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  • Inorganic Chemistry  (1,631)
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  • 1
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    Observation on the sex ratio, fecundity, egg size and gonadosomatic index of grey mullet (Mugil cephalus) from high brackish tropical lagoon (2021)
    FISON | Lagos (Nigeria)
    In:  http://aquaticcommons.org/id/eprint/24627 | 19325 | 2018-05-22 06:26:49 | 24627 | Fisheries Society of Nigeria
    Details
    Publication Date: 2021-07-15
    Description: The 2661 specimens of the striped mullet, Mugil cephalus L. used for this study, were collected from high brackish lagoon in southwest Nigeria for 24 months. The size of the 2661 specimens of M. cephalus used for this study ranged from 1.7- 29.5cm standard length (total lenght 1.9 to 39.0cm). The sex ratio for M. cephalus was 1:0.53 and this showed a statistically significant (p〈0.05) dominance of the male over the females for the size range. The fecundity estimates varied from 635,568- 1,520,185 and was positively correlated to the fish and weight. Oocyte diameter averaged 409.64 ~c 40.67pm and this is indicative of an early stage of gonad maturation of the specimens in the lagoon before final spawning occurred. The GSI indicated that spawning activity occurred from December to May in the open ocean.
    Description: Includes: 28 references.
    Keywords: Ecology ; Fisheries ; Mugil cephalus ; ASE ; Nigeria ; Lagos Lagoon ; Mature ; Spawning ; Specimen ; Male ; Female ; brackishwater environment ; automation
    Repository Name: AquaDocs
    Type: conference_item , TRUE
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    Format: 241-246
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  • 2
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    Study on propagation and breeding of Hamoun fish (shizothoraxzarudnyi) to one gram weight in earthen pond (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25322 | 18721 | 2018-09-12 09:50:04 | 25322 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Hamoun fish, Schizothorax zarudnyi, is an indigenous species of the eastern waters of Iran, which is exclusively found in this region. However recently drought occurrence in the Chahnimeh reservoirs (a semi natural water body) making them vulnerable to extinction. As an appropriate action to address this problem and according to the 3 side contract between Italian Government – UNDP - Islamic republic of Iran Government and the Italian government financial support to reduce poverty in the Province of Sistan-Baluchestan through the reinforcement and dissemination of aquaculture activities the project was developed at the Hamoun Research Unit by the Chahbahar Fisheries Research Center to record the breeding normative of 1 g weight larvae for restocking and other researching purposes. 331 broodstocks of the indigenous species Shizothorax zarudnyi weighing 800-2450 g were collected from the Chahnimeh reservoirs in early autumn, 2006. From 5/3/2007 (the project is supported and communicated on 2010) , Ovulation was stimulated with three stimulators; pituitary extract (3-6 mg kg-1 body weight), GnRH-A (20-30 mg kg-1 body weight) and anti dopamine (10-15 mg kg-1 body weight) that was given in 2-3 doses to breeders. Of 169 injected breeders , some were injected On mid March of 2007 (12-13 ºC water temperature) responded to the injection 25% ,while the rest were injected On April of 2008 (14-16 ºC water temperature) responded to the injection 65%. In the present project of 167 breeders 82 were female and 87 male. Totally 30 female breeders released their eggs in different stages. 20 female breeders released their eggs completely, 3 breeders released half of their eggs and 7 released 1/3 of their eggs. The male breeders just injected in the final dose of hormontrapy and all were ready for releasing sperms however the ovulation in female breeders occurs between 353-428 h ºC and after the final dose of injection. Ripe eggs were stripped from the females and fertilization was done by the dry method. Fertilized eggs were transferred to veis incubators and troughs. Incubation period for eggs differs and larvae hatch out after about 910 days at an average water temperature of 12.5 °C. Maintained at 13-14 °C, complete absorption of yolk sac in Shizothorax zarudnyi larvae occurred after 5-8 days. Larvae were fed with a mixture of powdered milk and egg yolk in this stage followed by decapsulated Artemia cysts and nauplii of Artemia and then on formulated starter diets used for carps. Because the ponds were not ready, larvae were maintained in troughs for about ten days before they were transferred to two 1200 m2 earthen ponds where they reached a body weight of about 1 g. They were then handed over to the Iranian Fisheries department in the region. Larvae were fed with the starter feed SFCO in the earthen ponds. About 350 thousand larvae were stocked in two earthen ponds. Based on the results of present study and other studies we may conclude that artificial breeding in Schizothorax can be successfully achieved at 14-16 ºC in flow through systems using hormone therapy (combination of GnRha and anti dopamine) and larvae could be easily cultured in earthen ponds. However this species exhibits lower growth rates as compared to carps its high expenses could have an important role in economical feasible.
    Keywords: Aquaculture ; Iran ; Sistan and Baluchestan province ; Chahnimeh reservoirs ; Chahbahar ; Hamoun fish ; Schizothorax zarudnyi ; Breeding ; Species ; Aquaculture ; Temperature ; Female ; Eggs ; Hormontrapy ; Sperm ; Ovulation ; Larvae ; Fisheries ; Earthen ponds
    Repository Name: AquaDocs
    Type: monograph
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  • 3
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    Investigation of production possibility of monosex female and sterile fish in rainbow trout Oncorhynchus mykiss (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25147 | 18721 | 2018-08-26 16:54:41 | 25147 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: This investigation carried out for the first time in Iran inorder to prodcution of monosex female and also sterilization in Rainbow trout. In this study, the eggs of general females were fertilized with the sperm of sex reversed male and so monosex female population was produced in second generation and sterilization carried out with oral administration of 17α methy 1 testosterone and immenrsion and oral administiration methods were used in embryonic stage and from commencing of acitve feeding of larvae, respectiverly. For sex reversal , 13 treatments were considered totally, that the most percentage of male (100%) was observedc in a treatment including of orally administration of 0.5 ppm hormone for 60 days after commencing active feeding (P〈0.001). In the other treamtnet, different percentages of sex ratio including male, female, intersex and sterility were observed. The offspring of genral eggs fertilization with the sperm of masculinized fish were 100% female, chisquare test was shown the treatment of orally administration of 30 ppm hormone for 120 days after commencing active feeding that had been considered for sterilization, was produced 90% sterile fish (P〈0.001) and was changed the sex ratio significancthy. Morphological changes of the gonads and sperm ducts in matured fish and also histological changes in the gonads of fish in the treamtints were considerable.
    Keywords: Biology ; Iran ; Monosex ; Female ; Male ; Sterilization ; Rainbow trout ; Eggs ; Fertilized ; Sperm ; Population ; Sex ; Fish ; Oncorhynchus mykiss ; Rainbow trout
    Repository Name: AquaDocs
    Type: monograph
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  • 4
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    Bester (beluga ♀ × starlet ♂) production and comparing their growth with beluga in Iran (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25193 | 18721 | 2018-09-03 17:21:38 | 25193 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Aquaculture for human consuming species is being considered as the first substitution of catching aquatic species due to increase of human population and decrease of wild aquatic stocks. In this study, the hybrid sturgeon Bester (female beluga x male sterlet) was produced for the first time in Iran. Sperm of 1.35 kg male Acipenser ruthenus was used to fertilize the eggs of 125 kg female Huso huso in Shahid Marjani Sturgeon propagation center (Agh Ghala, Golestan province). The fries of bester and control treatment of beluga were transported to International Sturgeon Research Institute (Rasht) after about one month by reaching to 490 mg and 377 mg of weight respectively. All fishes fed by artificial concentrated food (48-50% protein and 15-17% fat) after a period of feeding with Artemia and Daphnia. Sorting was carried out according to increase of fish weight for both fishes. Results showed that the imported sterlet spawners were not at the high maturation stages and especially the males had not suitable sperm quality. It showed that up to 2 months of age , these was no significant difference between bester and beluga weight but from this age up to 2 months of age the weight of beluga was greater. Meanwhile from 2 months old up to the end of the study (21 months) the weight of bester sample was significantly greater than beluga. The comparison of FCR for the whole rearing period showed no difference between bester and beluga (2.4 and 2.3 respectively). In general, the increase and decrease pattern of GR and SGR were coincided to each other, but showed monthly differences. Growth rate (GR) and specific growth rate (SGR) of bester were greater than beluga from 4th and 3rd month of rearing period respectively.
    Keywords: Aquaculture ; Iran ; Golestan Province ; Aquaculture ; Beluga ; Sterlet ; Bester ; Growth Rate ; Aquatic ; Species ; Population ; Female ; Male ; Acipenser ruthenus ; Huso huso ; Sturgeon ; Artemia
    Repository Name: AquaDocs
    Type: monograph
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  • 5
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    Histologic study of ovarian changes during the reproductive cycle of female yellow fin sea bream, Acanthopagrus latus (2021)
    In:  http://aquaticcommons.org/id/eprint/25960 | 18721 | 2018-11-20 12:36:29 | 25960 | Khorramshahr University of Marine Science and Technology
    Details
    Publication Date: 2021-07-24
    Description: This study was done to investigate the macroscopic and microscopic structure of the ovary of Acanthopagrus latus and their changes during sexual maturation cycle from October 2011 to may 2011. 80 A. latus from Mussa Greek (North West of Persian Gulf) were captured and transferred to the laboratory. After biometry, gonads were removed, were weighted and fixed in Bouin's Fluid. Samples were dehydrated, clarified, embedded and sections were prepared. After staining with H&E these slides were studied under light microscopy. Gonadosomatic indices, macroscopic and microscopic changes in the ovary during different months were recorded. The minimum value of GSI were measured in May, (0.31 ± 0.01) while its maximum was seen in March (9.9 ± 3.1). Cyclic changes in ovarian maturity were divided into six stages, including immature, premature, mature, ripe, spawning and resting. A. latus had asynchronous spawning that was occurred from February up to March.
    Keywords: Aquaculture ; Biology ; Iran ; Histologic ; Female ; Yellowfin Seabream ; Acanthopagrus latus ; Ovarian
    Repository Name: AquaDocs
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  • 6
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    Effects of endocrine disruption by 4-nonylphenol ethoxylate on the growth performance and immune response of female and male immature koi carp (Cyprinus carpio carpio) (2021)
    In:  http://aquaticcommons.org/id/eprint/26001 | 18721 | 2018-10-19 18:22:44 | 26001 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-24
    Description: Nonylphenol (NP) is an endocrine disrupting chemical which has been shown to be able tomodulate endocrine system of various organisms by different mechanisms. The objective of this study was to investigate the potential effects of 4-NP and 17-β - estradiol (E2) on the immune parameters (IgM levels and lysozyme activity) of the teleost Koi carp (Cyprinus carpio carpio) for a better understanding of the immunereproductive system interactions. The experimental fishes were injected with ascending doses (10, 50,100 μgg^-1 body weight) of 4- nonylphenol (4-NP) and (2 μgg^-1 body mass) of 17-β-estradiol (E2) or vehicle during 3 weeks. After 21 days, the fishes (180) were anesthetizedand their blood samples were collected from caudal vein, and then they were dissected and sexually separated by gonad characters. The measurement of immune parameters in plasma showed that 4-NP induced significant increase in the IgM levels and lysozyme activity at dose of 50 μgg^-1 while the levels of these parameters in the higher doses (100 μgg^-1) decreased compared with the control group (p〈0.05). In addition the treatment, with 2 μgg^-1 E2 significantly decreased both the IgM levels and lysozyme activity after 21 days of injection. These results indicated that 4-NP and E2 could lead to disturb the balance of immune system with potential consequences for immature koi carp.
    Keywords: Biology ; Pollution ; Iran ; 4-nonylphenol ; 17-β-estradiol ; Immune-reproductivesystem ; Immunoglobulin IgM ; Lysozyme ; Koi carp ; Cyprinus carpio carpio ; Disruption ; Growth performance ; Female ; Male
    Repository Name: AquaDocs
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  • 7
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    Broodstock management, reproduction, cryopreservation in salmonid, genetic management and selective breeding in responsible aquaculture (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25651 | 18721 | 2018-10-14 02:48:20 | 25651 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: This study was conducted to codify the guideline and indexes of broodstock management in salmonid fish and cryopreservation, selective breeding and sex reversal in hatchery to attain responsible aquaculture development. Cryopreservation includes of sperm and egg in term of economic is important in aquaculture. In this report mentioned the type and name of material. All female and sex reversal fish are produced by steroid hormone which mentioned in this report. Selective breeding include individual selection and family selection which could be used for genetic improvement of fish.
    Keywords: Aquaculture ; Biology ; Management ; Iran ; Broodstock ; Reproduction ; Cryopreservation ; Genetic ; Breeding ; Aquaculture ; Salmonid fish ; Sex reversal ; Hatchery ; Sperm ; Egg ; Female ; Steroid hormones
    Repository Name: AquaDocs
    Type: monograph
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  • 8
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    A survey on plankto an investigation on ecology of mudskippers in Hormuzgan coastal areas communities in Bandar Abbas coastal area (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25836 | 18721 | 2018-10-13 10:31:51 | 25836 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: The most important habitats of mudskippers are muddy areas in tidal zone of tropical mangrove forests. Mudskippers are related to Oxudercinae subfamily of Gobiid fishes. Three most distributed species of Hormozgan mudskippers were Periophthalmus waltoni, Boleophthalmus dussumieri and Scartelaos tenuis. These fishes can be considered as euryhaline and eurythermal aquatic species, because they can tolerate a wide range of salinity and temperature. A research was done since september 2008 to september 2009 in two important mangrove regions of Hormuzgan (Tyab and Khamir) to determine some ecological characteristics of inhabited mudskipper species. Results showed that nitrate levels are significantly different between tidal lines and seasons (P〈0.05). Maximum nitrite concentrations were recorded 53.2 and 92.5 µg/l in Khamir and Tyab respectively. The annual correlation matrix showed that a positive correlation between phosphate concentration and nitrite and silicate (P〈0.05). Silicate concentration was very high, because of too low density of diatoms and radiolarians. Some species of diatoms, dinoflagellates, cyanobacteria and larvae of crustacea and echinoderms were observed with different density and diversity. Sediment composition of the studied areas were categorized in three classes (clay, sand and clay - sand). Polychaetes formed dominant group of benthic fauna in Tyab and Khamir areas. High density of capitellid worms was possibly related to some environmntal stress caused by activity of fishing and cargo vessels. It was not observed significant difference between fishes length in two areas (P〈0.05); Mean lengths of P. waltoni, B. dussumieri and S. tenuis were calculated 9.85, 14.7 and 11.5 cm respectively. Spawning period of each three species in both areas were obtained from late winter to late spring based on gonadosomatic index values. Male to female sex ratio of P. waltoni, B. dussumieri and S. tenuis were calculated 1:0.45, 1:0.41and 1:0.74 respectively. Absolute fecundity of P. waltoni, B. dussumieri and S. tenuis were estimated 3558 ± 2202, 3952 ± 1030 and 6742 ± 1939 respectively. P. waltoni feeds mainly on fiddler crab, S. tenuis uses crustaceans and gastropods and B. dussumieri has a vegetarian diet.
    Keywords: Ecology ; Iran ; Persian Gulf ; Hormozgan Province ; Mudskippers ; Ecology ; Periophthalmus waltoni ; Boleophthalmus dussumieri ; Scartelaos tenuis ; Female ; Male ; Benthic fauna
    Repository Name: AquaDocs
    Type: monograph
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  • 9
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    A study on fishing status and some reproductive characteristics of Klunzinger’s mullet (Lize klunzingeri) in coastal waters of Khuzestan province (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25845 | 18721 | 2018-10-13 08:35:24 | 25845 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Biological characteristics of Liza klunzingeri were studied in two coastal areas, Sajaphi and Bahrekan, of eastern Khuzestan during March to February 2007. Among total 1880 measured fish specimens, 947 specimens were analyzed. The mean value of Gonado-somatic Index (GSI) for the male and female fish were calculated as 0.96± 1.39 and 3.25 ± 3.26 respectively. The GSI value was highest in November and lowest in July. The mean value of condition factor (K) was 1.25± 0.14 in male and 1.21± 0.15 for female. The highest K value were observed in June and the lowest value in February. The lenght at first maturity regardless of sexuality, was found to be 14.5 cm and the time of spawning based on reproduction pattern were determined in Nov- Dec. The length-weight relationship were calculated as Y=0.024L^2.76 (n=226R2=0.72) for males, Y=0.011L^3.00 (n=444R2= 0.78) for females and Y=0.0208L^2.82 (n=670R2 =0.82) for total fishes and also it’s found significant in level length weight relationship in (P〈0.05). According to biological characteristics and referring to American fisheries society (AFS) indices and Fuzzy logic expert system, Lize klunzingeri is classified as low vulnerable species.
    Keywords: Biology ; Iran ; Khuzestan province ; Sajaphi ; Bahrekan ; Lize klunzinger ; Gonado-somatic Index ; GSI ; Condition factor ; Biological characteristics ; Female ; Male ; Specimens ; Fisheries
    Repository Name: AquaDocs
    Type: monograph
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  • 10
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    A biological investigation into anchovy kilka (Clupeonella engrauliformis) in Anzali fishing ground, in 1993 (2021)
    In:  http://aquaticcommons.org/id/eprint/23897 | 18721 | 2018-08-01 14:07:33 | 23897 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: In the recent years the Kilka fishing in Iranian coastal waters boosted rapidly. The rich stock of Kilka has provided the possibility of apt exploitation. Among the three Kilka species, dwelling in the Caspian Sea, 90% of Iran's catch consists of Clupeonella engrauliformis. Analyses of Data show that the sex ratio varies widely with the change of season. In autumn the spawning reaches to the peak and the female population declines in catching. The oil fat content and intensity of feeding in both sexes did not reveal significant differences. Average size range is 194.91mm in summer und 97.97mm in winter. Length frequency in both sexes varies from 100 to 110mm, but the female size range changes are wider. Mean weight of Anchovy Kilka is 7.84g in spring and 5.92g in winter. The research also shows that in winter large size Kilka are distributed at the deepest area of the sea. Therefore, it is suggested that to catch the Kilka, fishing operation should be done at deeper depth.
    Keywords: Biology ; Fisheries ; Biological Investigation ; Anchovy Kilka ; Clupeonella engrauliformis ; Fishing ; Species ; Dwelling ; Clupeonella engrauliformis ; Sex ratio ; Female ; Oil fat ; Intensity ; Feeding ; Size ; Length ; Depth ; Anzali ; Iran
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  • 11
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    On some biological aspects of Acipenser stellatus in the south west of the Caspian Sea in 1994 (2021)
    In:  http://aquaticcommons.org/id/eprint/23906 | 18721 | 2018-08-01 16:06:14 | 23906 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: During the fishing season, the statistical study on biological observation was carried out in four fishing stations located in the south west of the Caspian Sea. During the research activity 2806 stellate sturgeon were sampled. The result revealed that the ratio of stellate eggs weight used in processing of caviar were 20.7% of the total weight of the body. The number of females were more than males in the catch (77.8%). In 1991 the average length of females was 134.1 cm and the average weight with internal organs was 11.86 kg. But the mean length and weight in 1993 were 120.5 cm and 11.6 kg. The average age for female and male were estimated 12 and 10 years old respectively. Among the samples 92.7% of females were in the fourth stage of maturity and 60.4% of males were in third stage of maturity. In spite of the fact that during 1984-1991 fishing effort for catching Acipenser had been increased, yielding caviar had been decreased. This state was continued until 1994. So it was revealed that increasing fishing efforts wasn't led to increase the exploitation of Acipenser stocks.
    Keywords: Biology ; Female ; Male ; Caviar ; Weight ; Body ; Biological ; Fishing ; Eggs ; Acipenser stellatus ; SW Caspian Sea ; Caspian Sea ; Iran
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  • 12
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    Length-length and Length-weight relationships in Astacus leptodactylus in Bandar Anzali region (2021)
    In:  http://aquaticcommons.org/id/eprint/23910 | 18721 | 2018-08-01 16:20:57 | 23910 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Different length - weight relationship in 1000 male and 201 female of freshwater crayfish were studied and it was revealed that the length - length relationship is best described through linear regression, while weight - length relation is best described through a multimodel one. The "r" coefficient was over 90% in all cases. It was also shown that the average length of the females was more than the males, but the average weight of the males was more than the females. The percentage of males and females with total length more than 102 mm were 63.7% and 72.1% respectively.
    Keywords: Biology ; Length ; Weight ; Relationships ; Male ; Female ; Freshwater ; Astacus leptodactylus ; Crayfish ; Bandar Anzali ; Iran
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  • 13
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    Artificial propagation of tench (Tinca tinca) to fingerling size in 1994 (2021)
    In:  http://aquaticcommons.org/id/eprint/23913 | 18721 | 2018-08-01 16:23:44 | 23913 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: The tench, predominantly lacustina fish, lives in stagnant or sluggish water-bodies with silt covered bottoms. The artificial propagation aimed to produce fish fries for re-stocking programme in natural ecosystems. The brooders comprised of 130 female and 80 male fish. The individual’s weight of fishes ranged between 0.2 - 0.45 kg. The female and male fishes caught from wild stock, were separated and kept in two earthen ponds. The biotechnique of carp production were used for culture process. The eggs stripping conducted 8 times according to the ripeness of the brood stock. 60 female spawners were injected by the Gonadotropic hormone from pituitary glands of carp fish to induce the brooders. The used dosage was between 3-8 mg per kg of body weight, applied in two doses. With only one treatment, 6-8 mg hormone were injected per kg of body weight. Water temperature were 20-24°C in June. Male spawners were treated only once with 3-4 mg of the hormone per kg of body weight. The experiment showed, in two application the effective dose of hormonewas 6-8 mg, which helped 80-100% of the female fishes to discharge eggs. With one treatment, the efficiency of hormone was 7-8 mg, which induced 80-85% of the female spawners to release eggs. The eggs were put in saline carbamid solution mixture after fertilization to eliminate stickness and then washed with pure water. The previous washing treatment took 45-75 minutes and the next one 25-45 minutes. The eggs fertilization rate were 70-85%. Incubation of eggs up to the hatching in Weise jar were 2-2.5 days. The survival rate of the hatched fries were 85-95%, and the size of newly hatched larvae were 4.5-5mm. The larvae were placed into large Zuge glass. After 4-5 days the young fishes began to feed actively. The diameter of dry eggs were 0.52 - 4 mm and the swelled ones 0.8 - 0.65 mm. Number of eggs/spawners (working fecundity) were 10848 - 17710, and relative fecundity were between 80-350 eggs per 1 gram of body weight. Color of the eggs were bright yellow and greenish yellow.
    Keywords: Aquaculture ; Fish ; Eggs ; Biotechnique ; Gonadotropic ; Hormone ; Female ; Body weight ; Hatching ; Size ; Survival rate ; Tinca tinca ; Fingerlig ; Iran
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  • 14
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    Histological study on the gonads of reared juvenile sturgeon (2021)
    In:  http://aquaticcommons.org/id/eprint/23934 | 18721 | 2018-08-01 17:07:39 | 23934 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Histological studies are of the most adequate way to determine the physiological condition of fish organs. The present research was carried out in order to conduct a qualitative evaluation of the growth and development of the reproductive system of three sturgeon species (Acipenser persicus, Acipenser gueldenstaedti, and Huso huso). In this evaluation two histological approaches, gonadectomy and biopsy, were employed. The studied sturgeons consisted of 58 one, two and six years old reared juveniles. Some 60% of the one-year-old Huso huso were of unknown sex, 20% were previtellogic females and 20% of the males were in the early stage of spermatogenesis. On the other hand 50% of the one-year-old Acipenser persicus were also of unknown sex, 30% premature females and 20% premature males. Some 30% of two-year-old Huso huso were of unknown sex, 40% premature females and 10% of the females were in stage I of sexual maturity and 10% were premature males. Among the six-year-old specimens, 60% of the Acipenser persicus were females in stage II of sexual maturity, 20% were males between stage II and III of sexual maturity and 20% were of unknown sex, while in the same age group 50% ofAcipenser gueldenstaedti were males in stage II of sexual maturity and 50% were females in stage II (semi lipid) of sexual maturity. The results of the study indicated that 28.75% were females were in stage II of the sexual maturity, 14.28% were female in stage II (lipid) of sexual maturity, 14.28% females in stage I of sexual maturity, 28.75% males between stage II and III of sexual maturity and 14.28% were males in stage IV of sexual maturity. The conducted study on the juvenile sturgeon confirmed that the growth process of the gonads occurred as it would have happened under natural circumstances. Occurrence of six-year-old Huso huso in stage IV of sexual maturity indicated that the rearing conditions in the fiberglass tanks and earthen ponds have been favorable and on the other hand no extra surplus energy has been used.
    Keywords: Biology ; Histological ; Juvenile ; Evaluation ; Sexual ; Gonadectomy ; Species ; Physiological ; Gonad ; Growth ; Sturgeon ; Female ; Huso huso ; Acipenser persicus ; Acipenser gueldenstaedtii ; Iran
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  • 15
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    Dichelyne minutus Rudolphi, 1819 (Nematoda : Cucullanidae) infection in Neogobius fluviatilis and Neogobius kessleri from southern part of Caspian Sea (2021)
    In:  http://aquaticcommons.org/id/eprint/23941 | 18721 | 2018-08-01 17:58:17 | 23941 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: During a parasitological study on two Goby species, 15 Neogobius kesslerithe and 30 Neogobius fluviatilis caught in the South Caspian Sea and Tajan River (Mazandaran Province) respectively. The fish nematode Dichelyne minutus Rudalphi 1819 was isolated from 15 N kessleri and 2 N. fluviatilis. Both male and female specimen of this parasite, were observed in the intestine of 17 fishes, some of which had penetrated into the mucous membrane of the intestine. The infection rate in N. kessleri and N fluviatilis were 100% and 6.6% respectively.
    Keywords: Fisheries ; Health ; Nematoda ; Cucullanidae ; Neogobius fluviatilis ; Neogobius kessleri ; Goby ; Species ; Nematode ; Male ; Female ; Specimen ; Parasite ; Fishes ; Mucous ; Infection rate ; Dichelyne minutus ; Parasitological ; Caspian Sea ; Tajan River ; Mazandaran Province ; Iran
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  • 16
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    Sex hormones changes in the reproductive cycle of female Trichiurus lepturus (2021)
    In:  http://aquaticcommons.org/id/eprint/23943 | 18721 | 2018-08-01 17:17:40 | 23943 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Ribbon fish, family Trichiuridae, is one the most important protein resources of the Indian Ocean. The considerable density of these aquatic animals, especially the dominant species Trichiurus lepturus, has drawn many researchers' attention to its biological characteristics and its reproductive characteristics in particular. The sampling was carried out in the Oman Sea from March 95 to November 96 (n=778). Studies on Estradiol - 17 - β, Progesterone and Cortisol hormones in female Trichiurus lepturus indicated that the production of these hormones increases considerably from maturity stage II. The serum levels of Estradiol - 17 - β hormone peaked during September, October and November and it remained high in the other months (1500 pg/ml). High levels of Progesterone occurred from December to March (during the spawning season). The changes in the Cortisol levels from August to December and again from February to March (0.5 - 3.5 mic/100 ml) were significant. The Estradiol - 17 - β fluctuation was observed simultaneously with the vitellogenesis process and absorption of Vitelline by the oocytes during their maturation. The changes in the oocytes membrane as well as the perforated channels impact on serum levels of Estradiol - 17 - β and Cortisol hormones have been discussed in this paper. The relative high levels of Estradiol - 17 - β during the whole year is probably related to the long spawning season of this species during autumn, winter and spring.
    Keywords: Aquaculture ; Biology ; Sex ; Hormone ; Female ; Trichiurus lepturus ; Ribbon fish ; Trichiuridae ; Protein ; Density ; Aquatic ; Species ; Estradiol ; Progesterone ; Serum level ; Spawning ; Fluctuation ; Vitellogenesis ; Absorption ; Oocytes ; Biological ; Reproductive ; Estradiol ; Oman Sea ; Iran
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  • 17
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    An investigation on feeding habits of northern pike of Anzali Lagoon (2021)
    In:  http://aquaticcommons.org/id/eprint/23953 | 18721 | 2018-08-02 11:10:53 | 23953 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Northern pike (Esox lucius L.) as a major game fish can be valuable in the management of water resources. In the present study, a total of 152 pikes from four areas: Abkenar (24%), Sorkhankool (10%), Siakeshim (54%) and Sheyjan (12%) were sampled. Female fishes were 75.6% of the samples and males were only 24.4%. Northern pike showed relatively fast growth and fishes above two years of age were mature and reached an average length of 32 cm. Feeding intensity and growth co-efficient in this species were correlated. Growth was highest in the lower age groups and with an increase in age and size, the feeding intensity and growth co-efficient of this have decreased. Northern pike in different ages feeds on different species of fish found in Anzali Lagoon. The most important of these fish species are Carassius auratus, Hemiculter leucisculus, Rhodeus sericeus amarus and larvae of Chalcalburnus chalcoides. In the 0+ age group pike mainly feeds on zooplanktonic Mysids. The results of the present study showed that Northern Pike is not restricting populations of commercial fish species of Anzali lagoon, but on the contrary it plays an important role in biological control of reproduction and propagation of non-commercial species like C. auratus and H. leucisculus.
    Keywords: Biology ; Feeding ; Esox lucius L. ; Female ; Males ; Growth ; Fishes ; Age ; Mature ; Length ; Species ; Size ; Carassius auratus ; Hemiculter leucisculus Rhodeus ; Sericeus amarus ; Larvae ; Chalcalburnus chalcoides ; zooplanktonic ; C. auratus ; H. leucisculus ; Biological ; Sheyjan ; Siakeshim ; Sorkhankool ; Abkenar ; Anzali Lagoon ; Iran
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  • 18
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    An investigation on food habits and spawning season of Acanthopagrus latus (Sparidae) in the Persian Gulf (2021)
    In:  http://aquaticcommons.org/id/eprint/23948 | 18721 | 2018-08-02 11:22:50 | 23948 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-15
    Description: Food habits and spawning season of Acanthopagrus latus (Sparidae) were studied in Bushehr, Delvar and Rostami waters of the Persian Gulf. Samples have been collected from March 1996 to February 1997 on a monthly basis. A total of 87 males and 95 females were examined and different biological parameters were measured. The Relative Length of the Gut (RLG) was estimated to be 0.64, which indicates that this is a carnivorous species. Food items have also been identified using numerical method. Out of 159 stomachs studied 36.36% were found to contain crabs, 33.99% other fish and 13.43% shrimps. The content of snails and sea urchins were 11/46% and 4/ 76% respectively. It is evident from the results of the study that A. latus feeds mainly on crabs and fish. The vacuity index was calculated to be 0.13. This indicated that this fish is an active predator. The Gonadosomatic Index (GSI) was estimated to be highest during February - March and lowest in June. GSI maxima was coincided with fecundity peak. The relationship between (GSI) and fish weight for females and males were r2=0.0235 and r2 =0.0214 respectively.
    Keywords: Biology ; Food Habits ; Spawning ; Acanthopagrus latus ; Sparidae ; Samples ; Male ; Female ; Length ; Gut ; RLG ; Species ; Numerical method ; Fish ; Shrimp ; Snail ; Sea urchins ; A. latus ; Feed ; Crab ; Vacuity index ; Gonado Somatic Index ; GSI ; Biological ; Delvar ; Bushehr ; Persian Gulf ; Iran
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  • 19
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    Reproduction biology of Astacus leptodactylus eichwaldi in the Iranian coastal water of the Caspian Sea (Bandar Anzali) (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25270 | 18721 | 2018-09-07 07:54:06 | 25270 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Sampling of Astacus leptodactylusc were conducted in order to determination of biometrical and biological parameters suchas length, weight, sex ratio, fecundity and natural reproduction time. Two transect were selected at 49 34 and 49 36 geographical position on east Caspian Sea near to Anzali city. Metallic folding trap with Silurus glanis as attractive diet were used to catch Astacus leptodactylusc at each line the traps were set on depth of 35, 45, 55 and 65 (5 trap at each depth). Random sampling from each depth on tow lin for one year were conducted and the biometry performed on catched Astacus leptodactylusc where their sext uality and their ration were determined for eacd month , season and whole year. Absolute fecundity determined by cooking Astacus leptodactylusc , taking out the ovary weighing and counting them .Working fecundity assesed by separating eggs from their swiming leges while enomerate all egg . Complete randomized test of ANOVA for analysing the data were employed. The results showed average length and welght were calculated 122/07±1/74mm and 57/96±1/81gr respectively. Average absolute fecundity was 310/22 ±10/72 eggs , average working fecundity was 251/84±8/84 eggs, Average ovary weight was determined 4.31±0.619 gr and average number of eggs in one gr was 74/52±1/53 eggs. The sextual ratio in all year long was 1:1.32. The reproduction season is about seven month from Feburary to July and the moulting of males occurs two times each year. One of time is at May and the other is in September. The female molt thtina as the male start for second time.
    Keywords: Biology ; Iran ; Caspian Sea ; Bandar Anzali ; Biology ; Astacus leptodactylus eichwaldi ; Sex ratio ; Fecundity ; Silurus glanis ; ANOVA ; Female ; Male ; Coastal water
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  • 20
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    Study on breeding of imported brood stocks Litopenaeus vannamei in Iran environment (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25338 | 18721 | 2018-09-12 10:05:42 | 25338 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Regarding to breeding the Litopenaeus vannamei, a total of 126 pairs of broodstocks were imported from Hawaii to Iran in 2004 and 2005, and then transferred to the Bandargah Research Station in Bushehr. The female broodstocks were ablated, and were feeded 3 times per day with cuttlefish, small size shrimp and Nereis worm with a ratio of 30% body weight. The water exchange were done 3 times per day. During the years 2004 and 2005 a total 1700000 naupli were produced of which 772000 specimens of pl13 and pl7 were harvested and then transferred to Helleh Site for carrying out the next culture project. The average naupli and postlarvae were 170000 and 92000 in proportion to each broodstock. Also the mean survival rate was estimated 54%.
    Keywords: Aquaculture ; Iran ; Persian Gulf ; Bushehr ; Litopenaeus vannamei ; Broodstock ; Breeding ; Female ; Cuttlefish ; Shrimp ; Nereis worm ; Body weight ; Nauplii ; Specimens ; Survival rate ; Breeding
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  • 21
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    Survey on health status in aquaculture sturgeons centers (Mazandaran, Guilan And Golestan Provinces) (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25330 | 18721 | 2018-09-13 12:40:49 | 25330 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Study of survey health management and diseases in hatcheries and fish farms can help us to knowledge and application control methods such as: prevention, treatment and increase high levels of production in hatchery and farms, finally. This survey carried out from 2005 to 2008 for 4 years in sturgeon hatcheries and farms of Golestan province. Sturgeon fishes include Huso Huso, Ship sturgeon, Acipenser persicus collected and for virology, bacteriology, fungius and hematology examined. Also, physicochemical parameters measured and recorded in different stages of culture. Results of this study showed that all of samples in virology was negative and did not observe any doubetful causes. In bacteriology CFU was variation from 3/9 ×105 to 6/9×10. The most parasites that detected in this survey was Cocolanus espherolanus, Sceria binopsulus semiarmatus and Amphilina fuliacea that separates from Acipenser Percicus, especially. The results about hematology parameters some important hematological indices of ship sturgeon include: The total RBC for female and mail specimens measured as 5.3±1.5 ×10^5, 4.8±0.5×10^5 per mm^3 respectively. The amount of haematocrit and hemoglobin for female and mail determined: 34.3±2.8, 35±1.4 percent and 10.3±0.9, 8.9±0.8 gr/dl .The MCV: 216.3± 96.2, 736.5± 102.5, MCH: 720.2±309.5, 186±0.7 and MCHC: 30±0.8, 25.5±3.4 percent respectively.The total WBC were (female, male): 21320±1054, 20580±777 per mm^3 and neutrophil: 16.4±2.5, 17±1.4 percent and lymphocyte: 74.4±2.4, 73.5± 0.7 percent and eosinophil: 6±1.4, 6.4±0.5 percent, monocyte: 2.8±0.8, 3.5±0.7 percent. There was not any significant differences (p〉0.05) between mentioned parameters in male and female (students t-test). Also evaluation of hematological parameters in bluga ( Huso huso) include: total RBC were (male , female) 5±0.3 ×105 , 4.9±0.6 ×105 per mm^3 ,respectively and hematocrit: 33.2±6.7 , 35.4±3.4 percent and hemoglobin: 11.2±1.5 , 12.2±1gr/dl and MCV: 669.9±172.2, 723.9±982.4 and MCH: 226.2±42.5, 249.5±35.4 and MCHC: 34.1±2.4, 34.6±3.6 percent respectively. The totals WBC were (male, female): 24800±707.1, 23042±1375.4 per mm^3 and neutrophil: 18.5±0.7, 21.4±1.1 percent and lymphocyte: 73.5±1.4, 68.4±1.1 percent and eosinophil: 5±2.8, 7±1.2 percent and monocyte: 3.5±3.5, 3.2±0.8 percent. According to statistically study the count of lymphocyte had significant difference between male and female fish and this count in male was higher than female. (p≥0.05).
    Keywords: Aquaculture ; Iran ; Golestan Province ; Mazandaran Province ; Guilan Province ; Fish ; Sturgeon ; Huso huso ; Ship ; Acipenser percicus ; Bacteriology ; Parasitology ; Health management ; Diseases ; Survey ; Aquaculture ; Hatcheries ; Samples ; Sceria binopsulus ; Amphilina fuliacea ; Female ; Male
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  • 22
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    Biological aspects of Sepia pharaonis in the Bahrekan waters (NW Persian Gulf) (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25182 | 18721 | 2018-09-03 17:06:03 | 25182 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: The biological aspects of Sepia pharaonis was studied during years 2006-07. The studied area restricted to the Bahrekan in Khouzestan province covering the depths of 2 up to 25m. The sampling methods were gillnet and bottom trawl. A total of 310 specimens collected, of which there wasn’t found any cuttlefish in the study area from July to October (5 months). The collected samples were transferred to the laboratory ashore for further biological measurements consist of: Mantle length, Body weight, sex determination. Gonado-Somatic Index, and determination of Spermatophoric Index, Spawning season, Food preference, Maturity stages and chemical analysis for food value determination. The results showed that the overall sex ratio is about M:F= 2:1 with percentage of 67.41% for males and 32.50% for females. Males are significantly bigger than females with average mantle length (ML) of 233.3 and 269.3 mm for female and male, respectively; with body weight of 1102.3 and 1450.6 g. The mantle length body weight relationship was found W=0.001 ML 2.540 (R2= 0.92) Female as: W= 0.0015 ML 4797 (R2= 0.93) male From point of feeding, the food preferences results indicated that fish is considered as main food, crabs as minor food and other marine organisms such as bivalvia and gastropods as random food. The highest vacuity Index (CV) and empty stomachs was determined for March-April and the lowest value was is December. Also, the maximum GSI was estimated for March-April months in which showing coherrances with the lowest food preference. The maximum spermatophoricfilaments were 856 and 45 for male pharaoh cuttlefish with mantle length of 300 and 185 mm, and on the other hand this values for fecundity were estimated 1589 and 53 for female specimens with 254 and 198 mm mantle length. The spawning season occurs in April- March in which accompany with migration of pharaoh cuttlefish towards shallow waters. The fishing season would be in this period in w.
    Keywords: Biology ; Iran ; Khouzestan province ; Bahrekan ; Sepia pharaonis ; Gillnet ; Sampling ; Specimens ; Weight ; Sex ; Gonado-somatic index ; Spawning ; Maturity ; Female ; Male ; Bivalvia ; Gastropods
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  • 23
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    The effect of thyroxine (T4) on prematurating in female, on survival percent, growth and development of egg and larval in rainbow trout, grass carp, silver carp and barbell of Caspian Sea (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25118 | 18721 | 2018-08-22 02:17:23 | 25118 | Iranian Fisheries Science Research Institute
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    Publication Date: 2021-07-16
    Description: Studies show that thyroxine can play an important role in regulating growth and other physiology activities. Since the direct role of thyroxine in growth metamorphose larval of bony fishes hasn't been proved yet, during the experiment accomplished in Shahid Ansari and Jajrood station, the hormones function in the survival of development of silver carp, grass carp and rainbow trout were studied. In this study accomplished of thyroxine baths with 0.1, 0.5 and 1 ppm (with 3 repeat). The other phase, thyroxine injected to females grass carp, silver carp, rainbow trout and barbell of Caspian Sea with different doses (1, 10 and 100 g/g B.W.). Tehn survival of development of embryo and larval and precent of fertilization were studied. Also, the percent of mortality were compared in two phases in stages of development. Results show that: 1) Trout: a) Phase of thyroxine bath: The number of hatching eggs and survival of larval in 0.5 ppm were increased to other treatment. b) Phase of hormone injection: The survival of larval in treatment of 10 g/g was 8.58% that was meaningful difference to other treatment (P〈0.05). 2) Silver carp: a) Phase of thyroxine bath: The number of hatching eggs and survival of larval in 0.5 ppm were (20%) increased to other treatment (P〈0.5). b) Phase of hormone injection: The survival of larval in treatment of 10 g/g was meaningful difference to other treatment (P〈0.05). 3) Grass carp: a) Phase of thyroxine bath: The number of hatching eggs and survival of larval in 0.5 ppm were 39% increased to other treatment. b) Phase of hormone injection: The survival of larval in treatment of 1 g/g was meaningful difference to other treatment (P〈0.05). 4) Barbel of Caspian Sea: Development stages wasn't determined in this fish. Number of eggs degenerated, number of eggs were the first development stages and growth of numbers increased on ovary.
    Keywords: Biology ; Chemistry ; Iran ; Caspian Sea ; Thyroxine ; Female ; Survival ; Growth ; Egg ; Larval ; Grass Carp ; Silver Carp ; Thyroxine (T4)
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  • 24
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    A survey on some biological aspects of spiny lobster Panulirus homarus for optimizing fishing season in Sistan - o – Baluchestan province (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25222 | 18721 | 2018-09-05 16:40:25 | 25222 | Iranian Fisheries Science Research Institute
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    Publication Date: 2021-07-16
    Description: Research project was conducted on some biological aspects of lobster in Oman Sea in the years1385-86. During the project some parameters such as length distribution, spawning peak, length (Carapace) at first maturity, the length at which 50% of the lobsters were found to be mature sexually, sex ratio, relative frequency index and population dynamics parameters were examined. Quantitative factors and catch composition of lobster including the amount of catch in terms of weight and number of ovigerous-female, under-sized specimens and so were compared by monthly. According to the results of present study caught specimens were male with carapace length of 22 and 110 mm respectively. The smallest ovigerous female was taken as 46mm CL when length at first maturity was estimated to be 69-70mm. the male: female ratio was 0.7: 1.3 for the whole year. A closed fishing season for the species is proposed during spring and September and October in Oman Sea. A large amount of the catches for the all sampling months came from the under-sized specimens, consist of 50 to 85% of the total catch. Therefore, presence of these small length groups have direct effects on time of closing season. Population dynamics parameters were calculated as follows: K=0.57 year, L∞= 103mm and Ǿ = 8.69. Total mortality (Z), natural mortality (M) and fishing mortality (F) coefficients were calculated as 2.73, 0.87 and 1.86, respectively. Exploitation ratio for the whole population was 0.681, indicating an overexploitation of the species. Based on the available data, the recruitment pattern for lobster was obtained for two season including spring (major) and autumn (minor). Catch per unite effort (CPUE) was calculated as 0.908 kg/Cage/day which was higher in comparison with two other areas including Ramin and Chabahar. Examination of CPUE for a 10-year period showed a decreased trend and the reduction for the year 1386 was about 30% when compared to the data from the year 1375. Moreover, the mean length during 1369-70 to 1385-86 (present study) decreased for the three areas including Pozm, Ramin and Chabahar, so that the carapas length decreased up to 10 mm in length. This sudden decrease in mean length during the 10-year period should be considered as a serious precariousness for sustainable exploitation of lobster in Oman Sea along Sistan and Baluchistan province.
    Keywords: Biology ; Iran ; Oman Sea ; Sistan and Baluchistan province ; Chabahar ; Survey ; Spiny Lobster ; Panulirus homarus ; Fishing ; Spawning ; Length ; Maturity ; Sex ratio ; Female ; Specimens ; Species ; Mortality ; Population
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  • 25
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    The production of all-female in rainbow trout (Oncorhynchus mykiss) using indirect feminization (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25767 | 18721 | 2018-10-13 08:03:37 | 25767 | Iranian Fisheries Science Research Institute
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    Publication Date: 2021-07-16
    Description: The sex reversal technique in fish is widespread in many countries. The development of these techniques is desirable because rainbow trout males reach their gonad maturity earlier compared to the females. Rainbow trout alevins were treated with 17α-methyltestosterone incorporated in the diet (0.5. 1.5, 3, 6 and 10 mg/kg) for 60 days from the beginning of first feeding. Sex was determined at 180 and 680 dpf by sampling fish (n = 20) from each group and examining gross gonadal morphology under a dissecting microscope. Also sex reversal ratio and growth performance were determined in hormone-treated groups. These sex reversed functional males were reared for brood stock until they attained sexual maturity. At the end of experiment, normal rainbow trout eggs were fertilized with the sperms taken from sex reversed males for producing all-female populations. Examination of the results showed that 17α- methyltestosterone was effective in all treatment. The highest sex reversal ratio with 100% was observed in group treated with 0.5, 1.5 and 3 mg/kg 17α- methyltestosterone. The highest live weight ratios were observed in groups fed with 6, 0.5 17α-methyltestosterone and control group. Female progeny produced from the sex reversed males were 100 % in all males that sired offspring. All female trout stocks produced by this method have advantage in rainbow trout culture since the fish is not meant for direct human consumption and is used to generate brood stock, therefore, difference of growth parameters do not influence the success.
    Keywords: Aquaculture ; Biology ; Iran ; Sex differentiation ; Oncorhynchus mykiss ; Sex reversal ; Hormone treatment ; 17-αmethyltestosterone ; Female ; Population ; Steroids ; Gonad ; Maturity ; Rainbow trout ; Sexual
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    Study of possibility of reproduction and mass culture of Nereis diversicolor (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25127 | 18721 | 2018-08-26 13:33:35 | 25127 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: The present study was firstly conducted to study the rate of sexual maturity in Nereis diversicolor under suitable conditions of temperature and photoperiod. The second objective was to determine the potential of artificial breeding in these worms for mass culture. Nereis diversicolor worms were collected from the Anzali lagoon in 4000 sampling operations during the year’s 2004 to 2006 using Ekman grab with a surface area of 400 cm2. The water salinity, temperature and total organic matter (TOM) of sediments in the sampling region was recorded. The worms were maintained in 0.5 tons (1 x 1 m^2) tanks containing clayey-muddy sediment to a height of 20 cm covered with 10 cm water (5 ‰) until they reached a weight of 200-300 mg. Sexual maturity in this species was attained at 4-6 ºC and spawning occurred at approximately 16 ºC. The first gametes were observed five weeks after the temperature increased from 6 to 16 ºC. Sexual maturity was studied at various salinities (0.5, 5, 12, and 15 ‰). Results indicate that these worms attained earlier sexual maturity at salinity of 15 ‰, compared to other salinities studied. No significant differences (P〉0.05) were observed between sexual maturity attained at 12 ‰ and 15 ‰. Stocking density (20, 50, 100, 150 worms) was studied in terms of sex and showed that number of females were higher than males and the ratio was 11:1 (female: male). No significant differences (P〉0.05) were observed between the various stocking densities and their replicates. The effect of light and photoperiod in synchronizing reproduction in male and female N. diversicolor was studied. It was evident that reproduction behavior in adult worms increased for a period of one week at the end of each month after they are exposed to a prolonged photoperiod (L:D=16:8) followed by a period of dim light (simulated using 1 W lamps). Feeding trials were carried out with Saccharomyces cerevisiae, formulated fish diets and humus. Results showed that this diet was effective in speeding up sexual maturity in worms and significant effect of treatment was observed (P〈0.05) in worms fed a diet of humus alone. Eggs and sperms were fertilized and worms developed from the young monotrochophore with jelly layer to the trochophore larvae.
    Keywords: Biology ; Iran ; Anzali Lagoon ; Reproduction ; Sexual Maturity ; Fertilization ; Nereis Diversicolor ; Culture ; Salinity ; Temperature ; Spawning ; Female ; Male ; Larvae ; Sacchromyces cerevisiae ; Density
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    Status of the tiger tooth croaker, Otolithes ruber (Schneider, 1801) and jinga shrimp, Metapenaeus affinis(H. Milne Edwards, 1837) stocks in Khouzestan coastal waters (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25404 | 18721 | 2018-09-20 12:28:18 | 25404 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Population dynamics parameters and exploitation ratio of Jinga Shrimp, Metapenaeus affinis were studied from Sep 2011 to Dec 2011 and data collected from two landing places (Hendijan and Lifee-Bosif). During the project, more than 2200 specimens of jinga shrimp were measured. The mean value of length for the male and female were calculated as 9.8±0.86, 10.24±1.18 and mean value of weight for the male and female was as 6.730±1.64, 8.14±2.90 respectively. The length-weight relation were calculated as TW=0.024TL2.24 (n=1084,R^2=0.71) for males, TW=0.011TL2.80 (n=1081,R^2= 0.81) for females also we found significant different level length-weight relation in P〈0.05. The growth parameters of von Bertalanffy equation were as, L_∞: 14.73 and K: 1.1 and t0: -0.02. The estimated valve of total mortality, natural mortality, fishing mortality and exploitation ratio is Z: 4.35, M: 1.68, F: 2.67, E: 0.61 respectively. By using method analyses knife-edge selection, relative yield per recruitment (Y'/R) :0.014, relative biomass per recruitment, (B'/R) :0.085., Exploitation ratio maximum sustainable yield, Emax : 0.38; biological reference points for Jinga Shrimp stock was calculated. MSY and fmsy value was 600T and 46100day respectively. Result in this study showed exploitation ratio Jinga Shrimp stock is over fishing and decreases exploitation ratio proposed.
    Keywords: Aquaculture ; Iran ; Khuzestan province ; Jinga Shrimp ; Population ; Dynamics ; Exploitation ; Tiger tooth Croaker ; Otolithes ruber ; Metapenaeus affinis ; Population ; Male ; Female ; Mortality ; Coastal waters
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    Study of some biological characteristics of golden grey mullet (Liza aurata) in Iranian Coastal waters of the Caspian Sea (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25184 | 18721 | 2018-09-03 17:16:24 | 25184 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: During last 65 years the catch of mullets had increasing trends with some fluctuations in the Iranian coastal water of the Caspian Sea .In this period about 138 thousand tons of mullets have been caught. Mullet’s account for 35% of total catch annually .In recent years species composition of mullets has chanched in the Iranian coastal water of the Caspian Sea and catch composition of golden grey mullet increased from 76% in 1995 to 98% in 2006. In this survey some biological characteristics of golden grey mullet have been studied in Iranian coastal water of the Caspian Sea .Fish samples have been gathered from commercial catch of beach seine cooperatives monthly in Iranian coastal water of the Caspian Sea over 2006 and 2007. In the laboratory fishes have been measured biometrically and biological parameters have been calculated .Also catch statistics of mullets during 2006-2007 have been obtained and discussed. Results showed that the catch of mullets in beach seine cooperatives during 2006 and 2007 was 4181 and 3685 tons respectively that golden grey mullet contribute 99% and 98% of the catch composition of mullets respectively. Length range of golden grey mullet caught by beach seine cooperatives was 19-50.2 cm with mean length of 32.7 ± 6.4 (± SD) and weight range was 67-1475 gr with mean weight of 411 ± 255 gr. The age structure of this species was comprised 2-10 years old fish with mean age of 4.42 years old. In this survey totally the sex ratio of male: female of golden grey mullet was 356: 434 that was significant variation from equal sex ratio. Pick of the spawning in Guilan province was in October and in Mazandaran and Golestan provinces was in November. In October the proportion of spawning females declined from western area (Guilan province) towards eastern parts (Golestan province).The highest proportion of spawning females was in December in Golestan province. The highest GSI index value was observed in September and October and it was decreased in November and December and it was consistent during January till April. The mean absolute fecundity was 700881±429987 eggs with minimum and maximum fecundity of 200112 and 2282862 eggs respectively. The Lm 50% for female golden grey mullet was calculated as 33.6 cm.
    Keywords: Biology ; Iran ; Caspian Sea ; Golestan province ; Guilan province ; Golden grey mullet ; Liza aurata ; Species ; Survey ; Samples ; Male ; Female ; Sex ratio ; Spawning ; GSI ; Fecundity ; Coastal waters
    Repository Name: AquaDocs
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    Artificial propagation and Culture of Rutilus frisii kutum of Autumn form for restocking (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25202 | 18721 | 2018-09-05 16:22:51 | 25202 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: The Kutum, Rutilus frisii kutum, is one of the most important bony fishes in Iranian coastal of Caspian Sea. Its harvest range is between 9000-10000 tons in a year, nearly 60% of the income of Bony fish fishery produced by kutum fishery. The stock of this species reduced drastically in 1982 and the catch slumped to the less than 250 tons in a year. Kutum spawning grounds deterioration, illegal catch, and lack of restocking program were the main cause of the decline. This Spices in nature comprised by two distinct form, autumn and spring form. It is worth to be mentioned, by the effect of Caspian Sea Bony fishes Research Center s experts in 1983, artificial spawning and releasing the fries to the sea were commenced and the catch steadily improved. But all activities concerning restocking of kutum concentrated in spring form, as at present about 260 million its fries are released into sea for restocking by Iranian Fisheries Organization, but for above reasons and lack of restocking program, the populations of autumn form gravely shrinked and neared to be extinct. Therefore, to enhance the biodiversity and boost fishers livelihood of kutum in Caspian Sea this project implemented by cooperation of Iranian Fisheries Organization (IFRO) and Caspian Environment Program (CEP) in Aquaculture Institute (Inland Waters). In this project, brooders caught from Anzali lagoon and maintained in two different condition, include of floating cages in Anzali lagoon and earthen ponds in Sefidrud Fisheries Research Station. The results showed that there weren’t significant differences between two maintenance statuses in maturation period and other reproductive characteristics of brooders. The ratio of male to female was 1 to 1.4. Minimum and maximum weight measured 1450 to 3100 g (with average of 1850 g) in female and 670 to 1900 g (with average of 1165 g) in male, respectively. The first natural spawning of brooders occurred in the end of January in temperature of 8 till 10 °C in concrete ponds. Also, some of maintained brooders in earthen ponds spawned in February. The average number of absolute, function and relative fecundity determined 88565 16809, 73805 14008 and 48670 12056, respectively. For artificial spawning, male and female brooders injected by pituitary gland with dose of 2-3 and 4-5 mg/kg body weight, respectively. Approximately, 10 and 8 present of female were over-ripe and immature in March (artificial spawning time), respectively. More than 59 % of injected female brooders induced to spawning in first stage after 10-12 hours and 13 % of them in twice stage and 7-8 hours after first stage. And also, 27.6% of females didn’t positive response to injection. Dry method used for eggs fecundity and incubation period lasted 7- 10 days in 14-16 °C. In totally, eggs fertilization were more than 95% and the average of eggs fertilization percent in throughout of period measured more than 92.7 6 %. Eyed eggs appearance occurred 3 days after fecundity and its mean was 92.7 15.1%. Larvae after yolk sac absorption feed with dry milk for 4-5 days and then introduced into fertilized earthen ponds (500 m2 and equipped to aerators) in intensive condition and fed with micro pellet food for 3-4 month. In finally, more than 1.8 million fries of 1-2 g and some more than 5 g produced and released into Anzali lagoon to its restocking for first time. It is expected that continuing of restocking process of autumn form kutum by Iranian Fisheries Organization eventuate to population increasing of this form in Caspian Sea in future.
    Keywords: Aquaculture ; Iran ; Caspian Sea ; Anzali Lagoon ; Sefidrud River ; Artificial propagation ; Culture ; Rutilus frisii kutum ; Kutum ; Bony Fish ; Fishery ; Spawning ; Biodiversity ; Aquaculture ; Brooders ; Fecundity ; Male ; Female ; Population
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    The amino acid compositions of muscle from wild and cultured of male and female Acanthopagrus latus (2021)
    In:  http://aquaticcommons.org/id/eprint/25929 | 18721 | 2018-11-22 06:49:55 | 25929 | Khorramshahr University of Marine Science and Technology
    Details
    Publication Date: 2021-07-16
    Description: The crude protein content and amino acid compositions of muscle from wild and cultured of male and female Acanthopagrus latus were determined by HPLC. There were quantitative differences between individual amino acids in the tissues investigated, depending on the sex and location. It was noted that, among all the samples studied in tissues, sexes and locations, lysine and isoleucine were the principal essential amino acid (EAA) and glutamic acid was mainly for non-essential amino acid (NEAA). Lysine and isoleucine of male muscles had a significantly higher (P〈0.05) amount than female muscles. The crude protein content in male and female muscles was not found to be significantly different. Depending on location, the percentages of arginine, leucine, isoleucine, lysine, serine, glycine, alanine and tyrosine were significantly different (P〈0.05) in muscles of wild and cultured fish. The wild seabream possessed considerably higher protein content than cultured seabream muscle. The results showed that wild male fish muscle contained a higher (P〉0.05) level of EAA than other groups. The results indicate that the Acanthopagrus latus is a healthful component of the human diet.
    Keywords: Aquaculture ; Biology ; Iran ; Amino acid ; Composition ; Muscle ; Male ; Female ; Acanthopagrus latus ; NEAA ; Protein
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    The effect of repeated implantation of triiodo thyronine on the performance of physiology of cultured female great sturgeon (Huso huso) (2021)
    In:  http://aquaticcommons.org/id/eprint/25952 | 18721 | 2018-11-22 07:24:13 | 25952 | Khorramshahr University of Marine Science and Technology
    Details
    Publication Date: 2021-07-16
    Description: The objective of this study was to examine the effects of triiodothyronine (T_3) implantation on the performance of physiology of cultured great sturgeon (Huso huso). Three treatments with 5 fish for each treatment were considered. The experimental treatments included: control (capsules containing cocoa butter alone), low level of T_3 (T_1; 1 mg T_3/kg body weight + cocoa butter), and high level of T_3 (T_10; 10 mg T_3/kg body weight+ cocoa butter). The capsules containing hormones and cocoa butter were intraperitoneally implanted to 3-year-old pre-vitellogenic stage female fish (mean initial body weight 6999.7±100.9 g) every 6 weeks over a six month period from January 2009 to June 2010. The serum levels of some hormone (T_3, cortisol, ACTH) and biochemical parameters (glucose, cholesterol and calcium) were determined at the initial time and three weeks after each implantation. Growth indices (WG, SGR and CF) were determined at the end of the experiment. The results showed that fish treated with the high and low T_3 doses produced significant changes in thyroid hormone levels (P〈0.05). Serum cortisol was significantly higher in T_3- implanted fish than in control fish (P〈0.05). Serum glucose and calcium concentrations were significantly greater in fish treated with the high T_3 doses compared to the other two experimental groups (P〈0.05). Significant differences were observed in serum ACTH and cholesterol concentrations among treatments in the last and second sampling time, respectively (P〈0.05). Final weight was the highest in T_1-implanted fish; intermediate in those implanted the high T_3 dose, and lowest in controls (P〈0.05). These results indicated that the long-term implantations of T_3 hormone influence the physiological parameters of great sturgeon and promote the somatic growth in a physiological dose.
    Keywords: Aquaculture ; Iran ; Implantation ; Triiodothyronine ; Performance ; Physiology ; Female ; Great sturgeon ; Huso huso ; Body weight ; ACTH ; Serum ; Fish
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    Production of artificial diets and determination of their effects as alone and combination with natural wet diet on female western white shrimp broodstock maturation (Litopenaeus vannamei) (2021)
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25801 | 18721 | 2018-10-13 08:37:23 | 25801 | Iranian Fisheries Science Research Institute
    Details
    Publication Date: 2021-07-16
    Description: Due to the usefulness of shrimp broodstock pelleted diets, from aspects of, easier maintenance, transportation, broodstock feeding, and cheaper as compared to natural wet diets, the use of natural wet foods, include sand worm (Perinereis nuntica), cattle fish )Sepia pharaonis) and veal livier decreased and the quantity of pelleted diet increased. Survey was conducted, in tankes with a volume of 300 liters. Tanks were filled with 150 liters of water. 10 broodstock in each tank was left, with an average weight of 37±2 grams. Daily feeding rate, was twenty-five percent of their biomass. The survey was include, 9 treatments with 3 replicates in each tank as described below. Control treatment: broodstock feeding only with, sand worm (33%), cattle fish (34%) and bull livier (33%). Exprimental treatment 1: broodstock feeding with pelleted diet contain 50 percent crude protein and 8 percent crude fat (50%)+sand worm (16 %)+cattle fish (18%)+veal livier (16%). Treatment 2: broodstock feeding with pelleted diet contain 50 percent crude protein and 10 percent crude fat (50 %)+sand worm (16 %)+cattle fish (18%) and veal livier (16%). Treatment 3: broodstock feeding with pelleted diet contain 40 percent crude protein and 10 percent crude fat (50%)+sand worm (16 %)+cattle fish (18 %) and veal livier (16 %). Treatment 4: broodstock feeding with pelleted diet contain 40 percent crude protein and 8 percent crude fat (50 %)+sand worm (16 %)+cattle fish (18 %) and veal livier (16 %). Treatment 5: broodstock feeding with pelleted diet contain 50 percent crude protein and 10 percent crude fat (100 %). Treatment 6: broodstock feeding with pelleted diet contain 50 percent crude protein and 8 percent crude fat (100 %). Treatment 7: broodstock feeding with pelleted diet contain 40 percent crude protein and 10 percent crude fat (100 %). Treatment 8: broodstock feeding with pelleted diet contain 40 percent crude protein and 8 percent crude fat (100%). The results showed that, Gonadosomatic index (GSI) in treatments 3: control and 6, was significantly more than others treatments (p〈0.05). Hepatosomatic indexes, in often treatments was almost equal, and in some cases were significantly different (p〈0.05). In treatments 3 and control, absolute fecundity, was significantly more than others treatment (p〈0.05). The survival percent, in treatment 8 was significantly less than others treatments (p〈0.05). The survival percent in others treatments was not significantly difference (p〉0.05). From the aspect of mean weight of broodstock, wasn’t significant difference in treatments (p〉0.05). From the aspect of mean length of carapac, wasn’t significant difference in treatments (p〉0.05). From the aspect of mean body length, wasn’t significant difference in often treatments (p〉0.05), and in treatments 5 and 6 was significantly less than others (p〈0.05). In the determination of relasheship between kind of treatments and abundance of maturated broodsock, wasn’t significantly difference (p〉0.05). In the determination of, correlation between weight (g) and total length(cm), (r=0.71), weight and carapace length (cm) (r=0.70), the correlation was strong. Between GSI, HIS, carapace length and total length the correlation was intermediate (r=0.54). The correlation between absolutely fecundity and total length (r=0.20), absolutely fecundity and carapace length (r=0.28), absolutely fecundity and weight (r=0.35) was weak. The results showed that, the use of combination of pelleted diet and natural wet diets can increase female maturation indexes. Totally we can noted that, GSI, HIS and absolute fecundity of broodstock, that fed with pelleted diet contain 40 percent crude protein and 10 percent crude fat (50 %)+sand worm (16 %)+cattle fish (18 %) and veal livier (16 %) (treatment 3) was better than the other treatments. Positive effects of this treatnent on sexual indexes, was due to provide part of nutritional requirement of shrimp broodstock from pelleted diet.
    Keywords: Aquaculture ; Iran ; Natural wet diet ; Pelleted diets ; Maturation ; Male ; Female ; Western white shrimp ; Artifitial diets ; Broodstock ; Litopenaeus vannamei
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    Development of an Aeroservoelastic Model for Gust Load Alleviation of the NASA Common Research Model Wind Tunnel Experiment (2020)
    In:  CASI
    Details
    Publication Date: 2020-01-23
    Description: As aircraft move to using composite materials as their primary structure they become lighter and more flexible as well. This presents some significant challenges in association with gust load alleviation. In this paper we develop an aeroservoelastic model for use in developing controllers that utilize distributed control surfaces for active gust load alleviation in a set of wind tunnel experiments. The model is based on an preexisting aeroelastic wing tunnel model and compares the baseline functionality to it. We also provide simple full state feedback simulations for the model.
    Keywords: Aerodynamics
    Type: AIAA 2020-0211 , ARC-E-DAA-TN76375 , AIAA Scitech 2020 Forum; Jan 06, 2020 - Jan 10, 2020; Orlando, FL; United States
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    Time Domain Astronomy with Fermi GBM in the Multimessenger Era (2020)
    In:  CASI
    Details
    Publication Date: 2020-01-18
    Description: No abstract available
    Keywords: Astronomy
    Type: MSFC-E-DAA-TN76747 , Meeting of the American Astronomical Society (AAS); Jan 04, 2020 - Jan 08, 2020; Honolulu, HI; United States
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    Development of Unsteady Pressure-Sensitive Paint Application on NASA Space Launch System (2020)
    In:  CASI
    Details
    Publication Date: 2020-01-17
    Description: The key measurement to acquire for understanding unsteady flow is surface pressure. Unsteady Pressure-Sensitive Paint (uPSP) is an emerging optical technique used in wind tunnel testing to measure fluctuating surface pressures. Recently, tests were conducted on NASAs Space Launch System in NASA Ames Research Centers Unitary Plan Wind Tunnel to determine the aeroacoustics environment and assist in developing the buffet forcing functions. Unsteady PSP data was collected during this test campaign. Steady state PSP data, infrared thermography, shadowgraph, accelerometer data, and dynamic pressure transducer data were also collected. In all 50 TB of data were collected during the three days of testing. During these three days of testing, a repeating transonic and supersonic alpha sweep condition was acquired. This paper presents these two wind tunnel conditions and examines how the temperature influences the PSP data. In the first large demonstration of uPSP in 2015 on an NESC-, AETC-sponsored wind tunnel test, lifetime PSP results highlighted the influence the model temperature had on the PSP data. A best practice of heat soaking the model before acquiring calibration images was followed during the test campaign presented in this paper. An infrared thermography camera and thermocouples were installed in the model to collect more details of the model surface temperature. Data processing schemes for uPSP are still in development but will be briefly presented here as well.
    Keywords: Aerodynamics
    Type: ARC-E-DAA-TN76119 , AIAA SciTech Forum; Jan 06, 2020 - Jan 10, 2020; Orlando, FL; United States
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    A Demonstration that Correcting for Completeness and Reliability Is Critical for Robust Occurrence Rates (2020)
    In:  CASI
    Details
    Publication Date: 2020-01-23
    Description: A measurement of planetary occurrence rates based on a planet catalog should be robust against details of how initial detections were classified as planets or false positives. This is accomplished by supplying the catalogs rate of missed planets (completeness) and rate of non-planets incorrectly called planets (reliability). The final Kepler data release (DR25) includes products that can be used with the DR25 planet candidate catalog to correct for completeness and reliability in occurrence rate estimates. This is made possible by the Kepler Robovetter, which algorithmically and uniformly selects planets based on a variety of metrics and thresholds. Completeness, reliability, and occurrence rates potentially depend on these Robovetter thresholds. We study the impact of varying these vetting thresholds using the techniques of Bryson et al. 2019 (arXiv:1906.03575). We explore sets of thresholds that result in more or fewer planets (trading off completeness for reliability), as well as thresholds tuned to pass DR25 false positives identified as possible planets by the Kepler False Positive Working Group. We find that when correcting only for completeness, and not reliability, the resulting occurrence rates have a strong dependence on these threshold sets. For example, the value of SAG13 eta-Earth varies by over a factor of 4 when not corrected for reliability. However, when correcting for both completeness and reliability, occurrence rates using our threshold sets are statistically indistinguishable, with differences being well inside 1-sigma error bars. We present occurrence rates integrated over several period-radius ranges. For example, SAG13 eta-Earth is consistent with 0.127 (+0.094)(-0.054) (from Bryson et al. 2019) for all the Robovetter threshold sets. This result emphasizes the importance of correcting occurrence rates for both completeness and reliability. This suggests that inconsistent completeness and reliability correction may be a significant contributor to the large variation of occurrence rates in recent literature. We plan to make the Robovetter results for our threshold sets available, and encourage the community to use them to examine whether other occurrence rate methods yield similarly robust results.
    Keywords: Astronomy
    Type: ARC-E-DAA-TN75923 , Meeting of the American Astronomical Society; Jan 04, 2020 - Jan 08, 2020; Honolulu; United States
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    The sequence and de novo assembly of the giant panda genome (2009)
    Nature Publishing Group (NPG)
    Details
    Publication Date: 2009-12-17
    Description: Using next-generation sequencing technology alone, we have successfully generated and assembled a draft sequence of the giant panda genome. The assembled contigs (2.25 gigabases (Gb)) cover approximately 94% of the whole genome, and the remaining gaps (0.05 Gb) seem to contain carnivore-specific repeats and tandem repeats. Comparisons with the dog and human showed that the panda genome has a lower divergence rate. The assessment of panda genes potentially underlying some of its unique traits indicated that its bamboo diet might be more dependent on its gut microbiome than its own genetic composition. We also identified more than 2.7 million heterozygous single nucleotide polymorphisms in the diploid genome. Our data and analyses provide a foundation for promoting mammalian genetic research, and demonstrate the feasibility for using next-generation sequencing technologies for accurate, cost-effective and rapid de novo assembly of large eukaryotic genomes.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951497/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Ruiqiang -- Fan, Wei -- Tian, Geng -- Zhu, Hongmei -- He, Lin -- Cai, Jing -- Huang, Quanfei -- Cai, Qingle -- Li, Bo -- Bai, Yinqi -- Zhang, Zhihe -- Zhang, Yaping -- Wang, Wen -- Li, Jun -- Wei, Fuwen -- Li, Heng -- Jian, Min -- Li, Jianwen -- Zhang, Zhaolei -- Nielsen, Rasmus -- Li, Dawei -- Gu, Wanjun -- Yang, Zhentao -- Xuan, Zhaoling -- Ryder, Oliver A -- Leung, Frederick Chi-Ching -- Zhou, Yan -- Cao, Jianjun -- Sun, Xiao -- Fu, Yonggui -- Fang, Xiaodong -- Guo, Xiaosen -- Wang, Bo -- Hou, Rong -- Shen, Fujun -- Mu, Bo -- Ni, Peixiang -- Lin, Runmao -- Qian, Wubin -- Wang, Guodong -- Yu, Chang -- Nie, Wenhui -- Wang, Jinhuan -- Wu, Zhigang -- Liang, Huiqing -- Min, Jiumeng -- Wu, Qi -- Cheng, Shifeng -- Ruan, Jue -- Wang, Mingwei -- Shi, Zhongbin -- Wen, Ming -- Liu, Binghang -- Ren, Xiaoli -- Zheng, Huisong -- Dong, Dong -- Cook, Kathleen -- Shan, Gao -- Zhang, Hao -- Kosiol, Carolin -- Xie, Xueying -- Lu, Zuhong -- Zheng, Hancheng -- Li, Yingrui -- Steiner, Cynthia C -- Lam, Tommy Tsan-Yuk -- Lin, Siyuan -- Zhang, Qinghui -- Li, Guoqing -- Tian, Jing -- Gong, Timing -- Liu, Hongde -- Zhang, Dejin -- Fang, Lin -- Ye, Chen -- Zhang, Juanbin -- Hu, Wenbo -- Xu, Anlong -- Ren, Yuanyuan -- Zhang, Guojie -- Bruford, Michael W -- Li, Qibin -- Ma, Lijia -- Guo, Yiran -- An, Na -- Hu, Yujie -- Zheng, Yang -- Shi, Yongyong -- Li, Zhiqiang -- Liu, Qing -- Chen, Yanling -- Zhao, Jing -- Qu, Ning -- Zhao, Shancen -- Tian, Feng -- Wang, Xiaoling -- Wang, Haiyin -- Xu, Lizhi -- Liu, Xiao -- Vinar, Tomas -- Wang, Yajun -- Lam, Tak-Wah -- Yiu, Siu-Ming -- Liu, Shiping -- Zhang, Hemin -- Li, Desheng -- Huang, Yan -- Wang, Xia -- Yang, Guohua -- Jiang, Zhi -- Wang, Junyi -- Qin, Nan -- Li, Li -- Li, Jingxiang -- Bolund, Lars -- Kristiansen, Karsten -- Wong, Gane Ka-Shu -- Olson, Maynard -- Zhang, Xiuqing -- Li, Songgang -- Yang, Huanming -- Wang, Jian -- Wang, Jun -- R01 HG003229/HG/NHGRI NIH HHS/ -- R01 HG003229-05/HG/NHGRI NIH HHS/ -- England -- Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉BGI-Shenzhen, Shenzhen 518083, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010809" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Animals ; China ; Conserved Sequence/genetics ; Contig Mapping ; Diet/veterinary ; Dogs ; Evolution, Molecular ; Female ; Fertility/genetics/physiology ; Genome/*genetics ; *Genomics ; Heterozygote ; Humans ; Multigene Family/genetics ; Polymorphism, Single Nucleotide/genetics ; Receptors, G-Protein-Coupled/genetics ; Sequence Alignment ; Sequence Analysis, DNA ; Synteny/genetics ; Ursidae/classification/*genetics/physiology
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    No bull: genes for better milk (2009)
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    Publication Date: 2009-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dalton, Rex -- England -- Nature. 2009 Jan 22;457(7228):369. doi: 10.1038/457369a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19158758" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breeding/economics/*methods ; Cattle/*genetics ; Dairying/economics/*methods ; Female ; Internationality ; Male ; Milk/*secretion/*standards ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide/genetics ; United States ; United States Department of Agriculture
    Print ISSN: 0028-0836
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    A role for self-gravity at multiple length scales in the process of star formation (2009)
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    Publication Date: 2009-01-06
    Description: Self-gravity plays a decisive role in the final stages of star formation, where dense cores (size approximately 0.1 parsecs) inside molecular clouds collapse to form star-plus-disk systems. But self-gravity's role at earlier times (and on larger length scales, such as approximately 1 parsec) is unclear; some molecular cloud simulations that do not include self-gravity suggest that 'turbulent fragmentation' alone is sufficient to create a mass distribution of dense cores that resembles, and sets, the stellar initial mass function. Here we report a 'dendrogram' (hierarchical tree-diagram) analysis that reveals that self-gravity plays a significant role over the full range of possible scales traced by (13)CO observations in the L1448 molecular cloud, but not everywhere in the observed region. In particular, more than 90 per cent of the compact 'pre-stellar cores' traced by peaks of dust emission are projected on the sky within one of the dendrogram's self-gravitating 'leaves'. As these peaks mark the locations of already-forming stars, or of those probably about to form, a self-gravitating cocoon seems a critical condition for their existence. Turbulent fragmentation simulations without self-gravity-even of unmagnetized isothermal material-can yield mass and velocity power spectra very similar to what is observed in clouds like L1448. But a dendrogram of such a simulation shows that nearly all the gas in it (much more than in the observations) appears to be self-gravitating. A potentially significant role for gravity in 'non-self-gravitating' simulations suggests inconsistency in simulation assumptions and output, and that it is necessary to include self-gravity in any realistic simulation of the star-formation process on subparsec scales.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817203/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817203/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goodman, Alyssa A -- Rosolowsky, Erik W -- Borkin, Michelle A -- Foster, Jonathan B -- Halle, Michael -- Kauffmann, Jens -- Pineda, Jaime E -- P41 RR013218/RR/NCRR NIH HHS/ -- P41 RR013218-12/RR/NCRR NIH HHS/ -- U54 EB005149/EB/NIBIB NIH HHS/ -- U54 EB005149-05/EB/NIBIB NIH HHS/ -- U54-EB005149/EB/NIBIB NIH HHS/ -- England -- Nature. 2009 Jan 1;457(7225):63-6. doi: 10.1038/nature07609.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Initiative in Innovative Computing at Harvard, Cambridge, Massachusetts 02138, USA. agoodman@cfa.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19122636" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Astronomy ; Carbon Monoxide/analysis ; Computer Simulation ; *Gravitation ; Stars, Celestial/*chemistry
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    Linking the p53 tumour suppressor pathway to somatic cell reprogramming (2009)
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    Publication Date: 2009-08-12
    Description: Reprogramming somatic cells to induced pluripotent stem (iPS) cells has been accomplished by expressing pluripotency factors and oncogenes, but the low frequency and tendency to induce malignant transformation compromise the clinical utility of this powerful approach. We address both issues by investigating the mechanisms limiting reprogramming efficiency in somatic cells. Here we show that reprogramming factors can activate the p53 (also known as Trp53 in mice, TP53 in humans) pathway. Reducing signalling to p53 by expressing a mutated version of one of its negative regulators, by deleting or knocking down p53 or its target gene, p21 (also known as Cdkn1a), or by antagonizing reprogramming-induced apoptosis in mouse fibroblasts increases reprogramming efficiency. Notably, decreasing p53 protein levels enabled fibroblasts to give rise to iPS cells capable of generating germline-transmitting chimaeric mice using only Oct4 (also known as Pou5f1) and Sox2. Furthermore, silencing of p53 significantly increased the reprogramming efficiency of human somatic cells. These results provide insights into reprogramming mechanisms and suggest new routes to more efficient reprogramming while minimizing the use of oncogenes.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735889/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735889/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kawamura, Teruhisa -- Suzuki, Jotaro -- Wang, Yunyuan V -- Menendez, Sergio -- Morera, Laura Batlle -- Raya, Angel -- Wahl, Geoffrey M -- Izpisua Belmonte, Juan Carlos -- 5 R01 CA061449/CA/NCI NIH HHS/ -- 5 R01 CA100845/CA/NCI NIH HHS/ -- R01 CA061449/CA/NCI NIH HHS/ -- R01 CA061449-30/CA/NCI NIH HHS/ -- R01 CA100845/CA/NCI NIH HHS/ -- R01 CA100845-05/CA/NCI NIH HHS/ -- R33 HL088293/HL/NHLBI NIH HHS/ -- R33 HL088293-03/HL/NHLBI NIH HHS/ -- England -- Nature. 2009 Aug 27;460(7259):1140-4. doi: 10.1038/nature08311. Epub 2009 Aug 9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Gene Expression Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19668186" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cells, Cultured ; Cellular Reprogramming/*physiology ; Cyclin-Dependent Kinase Inhibitor p21/deficiency/genetics/metabolism ; Down-Regulation ; Embryo, Mammalian/cytology ; Female ; Fibroblasts/cytology/metabolism ; Humans ; Keratinocytes ; Male ; Mice ; Mice, Inbred C57BL ; Pluripotent Stem Cells/*cytology/*metabolism ; Tumor Suppressor Protein p53/deficiency/genetics/*metabolism
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    Reconstructing Indian population history (2009)
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    Publication Date: 2009-09-26
    Description: India has been underrepresented in genome-wide surveys of human variation. We analyse 25 diverse groups in India to provide strong evidence for two ancient populations, genetically divergent, that are ancestral to most Indians today. One, the 'Ancestral North Indians' (ANI), is genetically close to Middle Easterners, Central Asians, and Europeans, whereas the other, the 'Ancestral South Indians' (ASI), is as distinct from ANI and East Asians as they are from each other. By introducing methods that can estimate ancestry without accurate ancestral populations, we show that ANI ancestry ranges from 39-71% in most Indian groups, and is higher in traditionally upper caste and Indo-European speakers. Groups with only ASI ancestry may no longer exist in mainland India. However, the indigenous Andaman Islanders are unique in being ASI-related groups without ANI ancestry. Allele frequency differences between groups in India are larger than in Europe, reflecting strong founder effects whose signatures have been maintained for thousands of years owing to endogamy. We therefore predict that there will be an excess of recessive diseases in India, which should be possible to screen and map genetically.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2842210/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2842210/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reich, David -- Thangaraj, Kumarasamy -- Patterson, Nick -- Price, Alkes L -- Singh, Lalji -- HG004168/HG/NHGRI NIH HHS/ -- R01 HG006399/HG/NHGRI NIH HHS/ -- U01 HG004168/HG/NHGRI NIH HHS/ -- U01 HG004168-03/HG/NHGRI NIH HHS/ -- England -- Nature. 2009 Sep 24;461(7263):489-94. doi: 10.1038/nature08365.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA. reich@genetics.med.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19779445" target="_blank"〉PubMed〈/a〉
    Keywords: Asia/ethnology ; Chromosomes, Human, Y/genetics ; Continental Population Groups/genetics ; DNA, Mitochondrial/genetics ; Ethnic Groups/*genetics ; Europe/ethnology ; Female ; Founder Effect ; Gene Frequency ; Genes, Recessive/genetics ; Genetic Variation/*genetics ; Genetics, Medical ; Genetics, Population ; Genome, Human/genetics ; Genomics ; Genotype ; Geography ; Humans ; India ; Language ; Linkage Disequilibrium/genetics ; Male ; Middle East/ethnology ; *Phylogeny ; Polymorphism, Single Nucleotide/genetics ; Principal Component Analysis
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    A bill against rights (2009)
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    Publication Date: 2009-04-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Apr 2;458(7238):550. doi: 10.1038/458550a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19340028" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Enteral Nutrition/ethics/utilization ; Female ; Humans ; Italy ; Living Wills/ethics/*legislation & jurisprudence ; *Patients ; *Physicians ; Right to Die/ethics/*legislation & jurisprudence ; Young Adult
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    Human DAZL, DAZ and BOULE genes modulate primordial germ-cell and haploid gamete formation (2009)
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    Publication Date: 2009-10-30
    Description: The leading cause of infertility in men and women is quantitative and qualitative defects in human germ-cell (oocyte and sperm) development. Yet, it has not been possible to examine the unique developmental genetics of human germ-cell formation and differentiation owing to inaccessibility of germ cells during fetal development. Although several studies have shown that germ cells can be differentiated from mouse and human embryonic stem cells, human germ cells differentiated in these studies generally did not develop beyond the earliest stages. Here we used a germ-cell reporter to quantify and isolate primordial germ cells derived from both male and female human embryonic stem cells. By silencing and overexpressing genes that encode germ-cell-specific cytoplasmic RNA-binding proteins (not transcription factors), we modulated human germ-cell formation and developmental progression. We observed that human DAZL (deleted in azoospermia-like) functions in primordial germ-cell formation, whereas closely related genes DAZ and BOULE (also called BOLL) promote later stages of meiosis and development of haploid gametes. These results are significant to the generation of gametes for future basic science and potential clinical applications.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133736/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133736/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kee, Kehkooi -- Angeles, Vanessa T -- Flores, Martha -- Nguyen, Ha Nam -- Reijo Pera, Renee A -- R01 HD047721/HD/NICHD NIH HHS/ -- R01 HD047721-06/HD/NICHD NIH HHS/ -- R01HD047721/HD/NICHD NIH HHS/ -- U54 HD055764/HD/NICHD NIH HHS/ -- U54 HD055764-015755/HD/NICHD NIH HHS/ -- U54HD055764/HD/NICHD NIH HHS/ -- England -- Nature. 2009 Nov 12;462(7270):222-5. doi: 10.1038/nature08562. Epub 2009 Oct 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Human Embryonic Stem Cell Research and Education, Institute for Stem Cell Biology & Regenerative Medicine, Department of Obstetrics and Gynecology, Stanford University School of Medicine, Stanford University, Palo Alto, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19865085" target="_blank"〉PubMed〈/a〉
    Keywords: Bone Morphogenetic Proteins/metabolism ; Cell Count ; *Cell Differentiation ; Cell Line ; Cellular Reprogramming ; Embryonic Stem Cells/cytology/metabolism ; Female ; Gene Expression ; Gene Silencing ; Genes, Reporter ; Germ Cells/*cytology/*metabolism ; *Haploidy ; Humans ; Male ; Meiosis ; Organ Specificity ; RNA-Binding Proteins/genetics/*metabolism
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    Ancient ivory figurine deserves a more thoughtful label (2009)
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    Publication Date: 2009-06-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McDonnell, Anna -- England -- Nature. 2009 Jun 18;459(7249):909. doi: 10.1038/459909b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19536241" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; Fertility ; History, Ancient ; Humans ; Pregnancy ; Sculpture/*history
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    Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-07-25
    Description: African primates are naturally infected with over 40 different simian immunodeficiency viruses (SIVs), two of which have crossed the species barrier and generated human immunodeficiency virus types 1 and 2 (HIV-1 and HIV-2). Unlike the human viruses, however, SIVs do not generally cause acquired immunodeficiency syndrome (AIDS) in their natural hosts. Here we show that SIVcpz, the immediate precursor of HIV-1, is pathogenic in free-ranging chimpanzees. By following 94 members of two habituated chimpanzee communities in Gombe National Park, Tanzania, for over 9 years, we found a 10- to 16-fold higher age-corrected death hazard for SIVcpz-infected (n = 17) compared to uninfected (n = 77) chimpanzees. We also found that SIVcpz-infected females were less likely to give birth and had a higher infant mortality rate than uninfected females. Immunohistochemistry and in situ hybridization of post-mortem spleen and lymph node samples from three infected and two uninfected chimpanzees revealed significant CD4(+) T-cell depletion in all infected individuals, with evidence of high viral replication and extensive follicular dendritic cell virus trapping in one of them. One female, who died within 3 years of acquiring SIVcpz, had histopathological findings consistent with end-stage AIDS. These results indicate that SIVcpz, like HIV-1, is associated with progressive CD4(+) T-cell loss, lymphatic tissue destruction and premature death. These findings challenge the prevailing view that all natural SIV infections are non-pathogenic and suggest that SIVcpz has a substantial negative impact on the health, reproduction and lifespan of chimpanzees in the wild.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2872475/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2872475/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Keele, Brandon F -- Jones, James Holland -- Terio, Karen A -- Estes, Jacob D -- Rudicell, Rebecca S -- Wilson, Michael L -- Li, Yingying -- Learn, Gerald H -- Beasley, T Mark -- Schumacher-Stankey, Joann -- Wroblewski, Emily -- Mosser, Anna -- Raphael, Jane -- Kamenya, Shadrack -- Lonsdorf, Elizabeth V -- Travis, Dominic A -- Mlengeya, Titus -- Kinsel, Michael J -- Else, James G -- Silvestri, Guido -- Goodall, Jane -- Sharp, Paul M -- Shaw, George M -- Pusey, Anne E -- Hahn, Beatrice H -- HHSN266200400088C/PHS HHS/ -- P30 AI 27767/AI/NIAID NIH HHS/ -- P30 AI027767/AI/NIAID NIH HHS/ -- P30 AI027767-21A17134/AI/NIAID NIH HHS/ -- R01 AI058715/AI/NIAID NIH HHS/ -- R01 AI058715-06A1/AI/NIAID NIH HHS/ -- R01 AI50529/AI/NIAID NIH HHS/ -- R01 AI58715/AI/NIAID NIH HHS/ -- R37 AI050529/AI/NIAID NIH HHS/ -- R37 AI050529-06A1/AI/NIAID NIH HHS/ -- RR-00165/RR/NCRR NIH HHS/ -- T32 GM008111/GM/NIGMS NIH HHS/ -- U19 AI067854/AI/NIAID NIH HHS/ -- U19 AI067854-059010/AI/NIAID NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Jul 23;460(7254):515-9. doi: 10.1038/nature08200.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19626114" target="_blank"〉PubMed〈/a〉
    Keywords: Acquired Immunodeficiency Syndrome/pathology ; Africa ; Animals ; Animals, Wild ; CD4-Positive T-Lymphocytes/immunology ; Female ; Humans ; Male ; Molecular Sequence Data ; Pan troglodytes/*virology ; Prevalence ; Simian Acquired Immunodeficiency ; Syndrome/epidemiology/immunology/*mortality/*pathology ; Simian Immunodeficiency Virus/*physiology
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    Changes of mind in decision-making (2009)
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    Publication Date: 2009-08-21
    Description: A decision is a commitment to a proposition or plan of action based on evidence and the expected costs and benefits associated with the outcome. Progress in a variety of fields has led to a quantitative understanding of the mechanisms that evaluate evidence and reach a decision. Several formalisms propose that a representation of noisy evidence is evaluated against a criterion to produce a decision. Without additional evidence, however, these formalisms fail to explain why a decision-maker would change their mind. Here we extend a model, developed to account for both the timing and the accuracy of the initial decision, to explain subsequent changes of mind. Subjects made decisions about a noisy visual stimulus, which they indicated by moving a handle. Although they received no additional information after initiating their movement, their hand trajectories betrayed a change of mind in some trials. We propose that noisy evidence is accumulated over time until it reaches a criterion level, or bound, which determines the initial decision, and that the brain exploits information that is in the processing pipeline when the initial decision is made to subsequently either reverse or reaffirm the initial decision. The model explains both the frequency of changes of mind as well as their dependence on both task difficulty and whether the initial decision was accurate or erroneous. The theoretical and experimental findings advance the understanding of decision-making to the highly flexible and cognitive acts of vacillation and self-correction.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875179/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875179/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Resulaj, Arbora -- Kiani, Roozbeh -- Wolpert, Daniel M -- Shadlen, Michael N -- 077730/Wellcome Trust/United Kingdom -- EY11378/EY/NEI NIH HHS/ -- Howard Hughes Medical Institute/ -- Wellcome Trust/United Kingdom -- England -- Nature. 2009 Sep 10;461(7261):263-6. doi: 10.1038/nature08275. Epub 2009 Aug 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Computational and Biological Learning Laboratory, Department of Engineering, University of Cambridge, Trumpington Street, Cambridge CB2 1PZ, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19693010" target="_blank"〉PubMed〈/a〉
    Keywords: Computers ; Cues ; Decision Making/*physiology ; Female ; Hand/physiology ; Humans ; Male ; Models, Neurological ; Models, Psychological ; Motion ; Movement ; Photic Stimulation ; Psychomotor Performance ; Reaction Time ; Time Factors
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    Mitochondrial gene replacement in primate offspring and embryonic stem cells (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-08-28
    Description: Mitochondria are found in all eukaryotic cells and contain their own genome (mitochondrial DNA or mtDNA). Unlike the nuclear genome, which is derived from both the egg and sperm at fertilization, the mtDNA in the embryo is derived almost exclusively from the egg; that is, it is of maternal origin. Mutations in mtDNA contribute to a diverse range of currently incurable human diseases and disorders. To establish preclinical models for new therapeutic approaches, we demonstrate here that the mitochondrial genome can be efficiently replaced in mature non-human primate oocytes (Macaca mulatta) by spindle-chromosomal complex transfer from one egg to an enucleated, mitochondrial-replete egg. The reconstructed oocytes with the mitochondrial replacement were capable of supporting normal fertilization, embryo development and produced healthy offspring. Genetic analysis confirmed that nuclear DNA in the three infants born so far originated from the spindle donors whereas mtDNA came from the cytoplast donors. No contribution of spindle donor mtDNA was detected in offspring. Spindle replacement is shown here as an efficient protocol replacing the full complement of mitochondria in newly generated embryonic stem cell lines. This approach may offer a reproductive option to prevent mtDNA disease transmission in affected families.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774772/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774772/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tachibana, Masahito -- Sparman, Michelle -- Sritanaudomchai, Hathaitip -- Ma, Hong -- Clepper, Lisa -- Woodward, Joy -- Li, Ying -- Ramsey, Cathy -- Kolotushkina, Olena -- Mitalipov, Shoukhrat -- P01 HD047675/HD/NICHD NIH HHS/ -- P01 HD047675-01A17045/HD/NICHD NIH HHS/ -- P01 HD047675-04/HD/NICHD NIH HHS/ -- P51 RR000163/RR/NCRR NIH HHS/ -- P51 RR000163-486766/RR/NCRR NIH HHS/ -- P51 RR000163-486775/RR/NCRR NIH HHS/ -- P51 RR000163-486819/RR/NCRR NIH HHS/ -- P51 RR000163-496038/RR/NCRR NIH HHS/ -- P51 RR000163-496045/RR/NCRR NIH HHS/ -- P51 RR000163-496074/RR/NCRR NIH HHS/ -- P51 RR000163-496133/RR/NCRR NIH HHS/ -- P51 RR000163-496134/RR/NCRR NIH HHS/ -- P51 RR000163-496136/RR/NCRR NIH HHS/ -- P51 RR000163-496137/RR/NCRR NIH HHS/ -- R01 HD057121/HD/NICHD NIH HHS/ -- R01 HD057121-01A2/HD/NICHD NIH HHS/ -- R01 NS044330/NS/NINDS NIH HHS/ -- R01 NS044330-05/NS/NINDS NIH HHS/ -- R24 RR013632/RR/NCRR NIH HHS/ -- R24 RR013632-10/RR/NCRR NIH HHS/ -- England -- Nature. 2009 Sep 17;461(7262):367-72. doi: 10.1038/nature08368. Epub 2009 Aug 26.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Oregon National Primate Research Center, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19710649" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Nucleus/genetics ; DNA, Mitochondrial/analysis/*genetics ; Embryo Transfer ; Embryonic Stem Cells/*cytology/*metabolism/transplantation ; Female ; Fertilization in Vitro ; Genes, Mitochondrial/*genetics ; Genome, Mitochondrial/*genetics ; Macaca mulatta/embryology/*genetics ; Male ; Meiosis ; Mitochondrial Diseases/genetics/prevention & control ; Mutation ; Oocytes/cytology/metabolism ; Pregnancy ; *Reproductive Techniques, Assisted
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    John Maddox and the Medical Research Council (2009)
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    Publication Date: 2009-05-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gowans, James -- England -- Nature. 2009 May 28;459(7246):506. doi: 10.1038/459506c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19478763" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials as Topic/history ; Correspondence as Topic/history ; Female ; Great Britain ; History, 20th Century ; Humans ; Periodicals as Topic/*history
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    Neurotransmission selectively regulates synapse formation in parallel circuits in vivo (2009)
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    Publication Date: 2009-08-21
    Description: Activity is thought to guide the patterning of synaptic connections in the developing nervous system. Specifically, differences in the activity of converging inputs are thought to cause the elimination of synapses from less active inputs and increase connectivity with more active inputs. Here we present findings that challenge the generality of this notion and offer a new view of the role of activity in synapse development. To imbalance neurotransmission from different sets of inputs in vivo, we generated transgenic mice in which ON but not OFF types of bipolar cells in the retina express tetanus toxin (TeNT). During development, retinal ganglion cells (RGCs) select between ON and OFF bipolar cell inputs (ON or OFF RGCs) or establish a similar number of synapses with both on separate dendritic arborizations (ON-OFF RGCs). In TeNT retinas, ON RGCs correctly selected the silenced ON bipolar cell inputs over the transmitting OFF bipolar cells, but were connected with them through fewer synapses at maturity. Time-lapse imaging revealed that this was caused by a reduced rate of synapse formation rather than an increase in synapse elimination. Similarly, TeNT-expressing ON bipolar cell axons generated fewer presynaptic active zones. The remaining active zones often recruited multiple, instead of single, synaptic ribbons. ON-OFF RGCs in TeNT mice maintained convergence of ON and OFF bipolar cells inputs and had fewer synapses on their ON arbor without changes to OFF arbor synapses. Our results reveal an unexpected and remarkably selective role for activity in circuit development in vivo, regulating synapse formation but not elimination, affecting synapse number but not dendritic or axonal patterning, and mediating independently the refinement of connections from parallel (ON and OFF) processing streams even where they converge onto the same postsynaptic cell.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746695/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746695/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kerschensteiner, Daniel -- Morgan, Josh L -- Parker, Edward D -- Lewis, Renate M -- Wong, Rachel O L -- EY01730/EY/NEI NIH HHS/ -- EY10699/EY/NEI NIH HHS/ -- R01 EY010699/EY/NEI NIH HHS/ -- R01 EY010699-16/EY/NEI NIH HHS/ -- T32 EY07031/EY/NEI NIH HHS/ -- England -- Nature. 2009 Aug 20;460(7258):1016-20. doi: 10.1038/nature08236.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Anatomy and Neurobiology, Washington University School of Medicine, St Louis, Missouri 63110, USA. KerschensteinerD@vision.wustl.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19693082" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Axons/metabolism ; Dendrites/metabolism ; Female ; Glutamic Acid/metabolism ; Male ; Mice ; Mice, Transgenic ; Receptors, Kainic Acid/genetics/metabolism ; Retinal Bipolar Cells/cytology/metabolism ; Retinal Ganglion Cells/cytology/metabolism ; Synapses/*metabolism ; Synaptic Transmission/*physiology ; Tetanus Toxin/genetics/metabolism
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    Amino-acid imbalance explains extension of lifespan by dietary restriction in Drosophila (2009)
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    Publication Date: 2009-12-04
    Description: Dietary restriction extends healthy lifespan in diverse organisms and reduces fecundity. It is widely assumed to induce adaptive reallocation of nutrients from reproduction to somatic maintenance, aiding survival of food shortages in nature. If this were the case, long life under dietary restriction and high fecundity under full feeding would be mutually exclusive, through competition for the same limiting nutrients. Here we report a test of this idea in which we identified the nutrients producing the responses of lifespan and fecundity to dietary restriction in Drosophila. Adding essential amino acids to the dietary restriction condition increased fecundity and decreased lifespan, similar to the effects of full feeding, with other nutrients having little or no effect. However, methionine alone was necessary and sufficient to increase fecundity as much as did full feeding, but without reducing lifespan. Reallocation of nutrients therefore does not explain the responses to dietary restriction. Lifespan was decreased by the addition of amino acids, with an interaction between methionine and other essential amino acids having a key role. Hence, an imbalance in dietary amino acids away from the ratio optimal for reproduction shortens lifespan during full feeding and limits fecundity during dietary restriction. Reduced activity of the insulin/insulin-like growth factor signalling pathway extends lifespan in diverse organisms, and we find that it also protects against the shortening of lifespan with full feeding. In other organisms, including mammals, it may be possible to obtain the benefits to lifespan of dietary restriction without incurring a reduction in fecundity, through a suitable balance of nutrients in the diet.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798000/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798000/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Grandison, Richard C -- Piper, Matthew D W -- Partridge, Linda -- 081394/Wellcome Trust/United Kingdom -- Wellcome Trust/United Kingdom -- England -- Nature. 2009 Dec 24;462(7276):1061-4. doi: 10.1038/nature08619. Epub 2009 Dec 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Healthy Ageing, Department of Genetics Evolution and Environment, University College London, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19956092" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acids/*metabolism ; Animals ; *Diet ; Drosophila melanogaster/metabolism/*physiology ; Female ; Insulin/metabolism ; Longevity/*physiology ; Methionine/metabolism ; Oviposition/physiology ; Random Allocation ; Signal Transduction
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    Archaeology: Origins of the female image (2009)
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    Publication Date: 2009-05-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mellars, Paul -- England -- Nature. 2009 May 14;459(7244):176-7. doi: 10.1038/459176a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19444200" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Archaeology ; Female ; Germany ; History, Ancient ; Horns/chemistry ; Humans ; Sculpture/*history ; Sex Characteristics ; Symbolism
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    Journal club. A geneticist views two theories of X-chromosome inactivation in a broad context (2009)
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    Publication Date: 2009-03-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Khalil, Ahmad M -- England -- Nature. 2009 Mar 19;458(7236):263. doi: 10.1038/458263f.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Harvard Medical School, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19295563" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; *Models, Genetic ; RNA Interference ; RNA, Long Noncoding ; RNA, Untranslated/*genetics ; Ribonuclease III/deficiency ; X Chromosome Inactivation/*genetics
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    Sex determination: Birds do it with a Z gene (2009)
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    Publication Date: 2009-09-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Graves, Jennifer A Marshall -- England -- Nature. 2009 Sep 10;461(7261):177-8. doi: 10.1038/461177a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19741690" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Chick Embryo ; Chickens/*genetics/*physiology ; Disorders of Sex Development ; Evolution, Molecular ; Female ; Gene Dosage/genetics ; Humans ; Male ; Models, Genetic ; Ovary/embryology/metabolism ; RNA Interference ; SOX9 Transcription Factor/genetics/metabolism ; Sex Chromosomes/*genetics ; *Sex Determination Processes ; Testis/embryology/metabolism ; Transcription Factors/deficiency/*genetics/*metabolism
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    Being human: love: neuroscience reveals all (2009)
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    Publication Date: 2009-01-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Young, Larry J -- England -- Nature. 2009 Jan 8;457(7226):148. doi: 10.1038/457148a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Yerkes National Primate Research Center, Emory University, Atlanta, Georgia 30322, USA. lyoun03@emory.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19129828" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arvicolinae/genetics/physiology ; Dopamine/metabolism ; Female ; Humans ; *Love ; Male ; Maternal Behavior/physiology ; Oxytocin/*metabolism ; Pair Bond ; Paternal Behavior ; Receptors, Vasopressin/genetics/metabolism ; Sexual Behavior/drug effects/physiology ; Vasopressins/*metabolism
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    Behaviour: Flies on film (2009)
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    Publication Date: 2009-12-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Buchen, Lizzie -- England -- Nature. 2009 Dec 3;462(7273):562-4. doi: 10.1038/462562a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19956235" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Behavior/physiology ; *Behavior, Animal ; Behavioral Research/*instrumentation/methods ; Drosophila melanogaster/*physiology ; Female ; Humans ; Male ; Software ; Video Recording/instrumentation/methods
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    Game theory: How to treat those of ill repute (2009)
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    Publication Date: 2009-01-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rockenbach, Bettina -- Milinski, Manfred -- England -- Nature. 2009 Jan 1;457(7225):39-40. doi: 10.1038/457039a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19122632" target="_blank"〉PubMed〈/a〉
    Keywords: Altruism ; Biological Evolution ; *Cooperative Behavior ; Cost-Benefit Analysis ; Female ; *Game Theory ; Humans ; Male ; Models, Psychological ; *Punishment/psychology
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    Research into group differences isn't wrong, just pointless (2009)
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    Publication Date: 2009-11-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rose, Steven -- England -- Nature. 2009 Nov 5;462(7269):35. doi: 10.1038/462035c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19890309" target="_blank"〉PubMed〈/a〉
    Keywords: Continental Population Groups/*genetics ; *Ethics, Research ; Female ; Humans ; Intelligence/*genetics ; Male ; Reproducibility of Results ; *Sex Characteristics
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    Genetic variation in IL28B and spontaneous clearance of hepatitis C virus (2009)
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    Publication Date: 2009-09-18
    Description: Hepatitis C virus (HCV) infection is the most common blood-borne infection in the United States, with estimates of 4 million HCV-infected individuals in the United States and 170 million worldwide. Most (70-80%) HCV infections persist and about 30% of individuals with persistent infection develop chronic liver disease, including cirrhosis and hepatocellular carcinoma. Epidemiological, viral and host factors have been associated with the differences in HCV clearance or persistence, and studies have demonstrated that a strong host immune response against HCV favours viral clearance. Thus, variation in genes involved in the immune response may contribute to the ability to clear the virus. In a recent genome-wide association study, a single nucleotide polymorphism (rs12979860) 3 kilobases upstream of the IL28B gene, which encodes the type III interferon IFN-3, was shown to associate strongly with more than a twofold difference in response to HCV drug treatment. To determine the potential effect of rs12979860 variation on outcome to HCV infection in a natural history setting, we genotyped this variant in HCV cohorts comprised of individuals who spontaneously cleared the virus (n = 388) or had persistent infection (n = 620). We show that the C/C genotype strongly enhances resolution of HCV infection among individuals of both European and African ancestry. To our knowledge, this is the strongest and most significant genetic effect associated with natural clearance of HCV, and these results implicate a primary role for IL28B in resolution of HCV infection.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172006/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172006/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Thomas, David L -- Thio, Chloe L -- Martin, Maureen P -- Qi, Ying -- Ge, Dongliang -- O'Huigin, Colm -- Kidd, Judith -- Kidd, Kenneth -- Khakoo, Salim I -- Alexander, Graeme -- Goedert, James J -- Kirk, Gregory D -- Donfield, Sharyne M -- Rosen, Hugo R -- Tobler, Leslie H -- Busch, Michael P -- McHutchison, John G -- Goldstein, David B -- Carrington, Mary -- HHSN261200800001E/CO/NCI NIH HHS/ -- HHSN261200800001E/PHS HHS/ -- R01 DA004334/DA/NIDA NIH HHS/ -- R01DA004334/DA/NIDA NIH HHS/ -- R01DA013324/DA/NIDA NIH HHS/ -- R01DK60590/DK/NIDDK NIH HHS/ -- R01HD41224/HD/NICHD NIH HHS/ -- R01HL076902/HL/NHLBI NIH HHS/ -- R56 DA004334/DA/NIDA NIH HHS/ -- Intramural NIH HHS/ -- England -- Nature. 2009 Oct 8;461(7265):798-801. doi: 10.1038/nature08463.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Johns Hopkins University, Division of Infectious Diseases, Baltimore, Maryland 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19759533" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Africa/ethnology ; Europe/ethnology ; Female ; Gene Frequency ; Genetic Variation/*genetics ; Genome-Wide Association Study ; Genotype ; Hepacivirus/drug effects/*immunology/physiology ; Hepatitis C/drug therapy/*genetics/*immunology/virology ; Humans ; Interleukins/*genetics/*immunology ; Male ; Polymorphism, Single Nucleotide/genetics
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    A role for a neo-sex chromosome in stickleback speciation (2009)
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    Publication Date: 2009-09-29
    Description: Sexual antagonism, or conflict between the sexes, has been proposed as a driving force in both sex-chromosome turnover and speciation. Although closely related species often have different sex-chromosome systems, it is unknown whether sex-chromosome turnover contributes to the evolution of reproductive isolation between species. Here we show that a newly evolved sex chromosome contains genes that contribute to speciation in threespine stickleback fish (Gasterosteus aculeatus). We first identified a neo-sex chromosome system found only in one member of a sympatric species pair in Japan. We then performed genetic linkage mapping of male-specific traits important for reproductive isolation between the Japanese species pair. The neo-X chromosome contains loci for male courtship display traits that contribute to behavioural isolation, whereas the ancestral X chromosome contains loci for both behavioural isolation and hybrid male sterility. Our work not only provides strong evidence for a large X-effect on reproductive isolation in a vertebrate system, but also provides direct evidence that a young neo-X chromosome contributes to reproductive isolation between closely related species. Our data indicate that sex-chromosome turnover might have a greater role in speciation than was previously appreciated.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776091/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776091/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kitano, Jun -- Ross, Joseph A -- Mori, Seiichi -- Kume, Manabu -- Jones, Felicity C -- Chan, Yingguang F -- Absher, Devin M -- Grimwood, Jane -- Schmutz, Jeremy -- Myers, Richard M -- Kingsley, David M -- Peichel, Catherine L -- P50 HG002568/HG/NHGRI NIH HHS/ -- P50 HG002568-08/HG/NHGRI NIH HHS/ -- P50 HG02568/HG/NHGRI NIH HHS/ -- R01 GM071854/GM/NIGMS NIH HHS/ -- R01 GM071854-05/GM/NIGMS NIH HHS/ -- T32 GM07270/GM/NIGMS NIH HHS/ -- England -- Nature. 2009 Oct 22;461(7267):1079-83. doi: 10.1038/nature08441. Epub 2009 Sep 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19783981" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Size ; Crosses, Genetic ; Female ; *Genetic Speciation ; Hybridization, Genetic ; Infertility, Male/genetics ; Japan ; Male ; Mating Preference, Animal ; Oceans and Seas ; Pacific Ocean ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Reproduction/genetics/physiology ; Sex Characteristics ; Sex Chromosomes/*genetics ; Smegmamorpha/anatomy & histology/classification/*genetics/*physiology ; Social Isolation ; Y Chromosome/genetics
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    HDAC2 negatively regulates memory formation and synaptic plasticity (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-05-09
    Description: Chromatin modifications, especially histone-tail acetylation, have been implicated in memory formation. Increased histone-tail acetylation induced by inhibitors of histone deacetylases (HDACis) facilitates learning and memory in wild-type mice as well as in mouse models of neurodegeneration. Harnessing the therapeutic potential of HDACis requires knowledge of the specific HDAC family member(s) linked to cognitive enhancement. Here we show that neuron-specific overexpression of HDAC2, but not that of HDAC1, decreased dendritic spine density, synapse number, synaptic plasticity and memory formation. Conversely, Hdac2 deficiency resulted in increased synapse number and memory facilitation, similar to chronic treatment with HDACis in mice. Notably, reduced synapse number and learning impairment of HDAC2-overexpressing mice were ameliorated by chronic treatment with HDACis. Correspondingly, treatment with HDACis failed to further facilitate memory formation in Hdac2-deficient mice. Furthermore, analysis of promoter occupancy revealed an association of HDAC2 with the promoters of genes implicated in synaptic plasticity and memory formation. Taken together, our results suggest that HDAC2 functions in modulating synaptic plasticity and long-lasting changes of neural circuits, which in turn negatively regulates learning and memory. These observations encourage the development and testing of HDAC2-selective inhibitors for human diseases associated with memory impairment.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3498958/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3498958/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Guan, Ji-Song -- Haggarty, Stephen J -- Giacometti, Emanuela -- Dannenberg, Jan-Hermen -- Joseph, Nadine -- Gao, Jun -- Nieland, Thomas J F -- Zhou, Ying -- Wang, Xinyu -- Mazitschek, Ralph -- Bradner, James E -- DePinho, Ronald A -- Jaenisch, Rudolf -- Tsai, Li-Huei -- R01 DA028301/DA/NIDA NIH HHS/ -- R01 DA028301-02/DA/NIDA NIH HHS/ -- R01 NS051874/NS/NINDS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 May 7;459(7243):55-60. doi: 10.1038/nature07925.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Picower Institute for Learning and Memory, Department of Brain and Cognitive Sciences.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19424149" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Butyrates/pharmacology ; Dendritic Spines/physiology ; Electrical Synapses/*physiology ; Female ; Gene Expression Regulation ; Hippocampus/metabolism ; Histone Deacetylase 1 ; Histone Deacetylase 2 ; Histone Deacetylase Inhibitors ; Histone Deacetylases/deficiency/genetics/*metabolism ; Hydroxamic Acids/pharmacology ; Learning/drug effects ; Male ; Memory/drug effects/*physiology ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Neurons/metabolism ; Promoter Regions, Genetic/genetics ; Repressor Proteins/antagonists & inhibitors/genetics/*metabolism ; Sodium/pharmacology
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    iPS cells produce viable mice through tetraploid complementation (2009)
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    Publication Date: 2009-08-13
    Description: Since the initial description of induced pluripotent stem (iPS) cells created by forced expression of four transcription factors in mouse fibroblasts, the technique has been used to generate embryonic stem (ES)-cell-like pluripotent cells from a variety of cell types in other species, including primates and rat. It has become a popular means to reprogram somatic genomes into an embryonic-like pluripotent state, and a preferred alternative to somatic-cell nuclear transfer and somatic-cell fusion with ES cells. However, iPS cell reprogramming remains slow and inefficient. Notably, no live animals have been produced by the most stringent tetraploid complementation assay, indicative of a failure to create fully pluripotent cells. Here we report the generation of several iPS cell lines that are capable of generating viable, fertile live-born progeny by tetraploid complementation. These iPS cells maintain a pluripotent potential that is very close to ES cells generated from in vivo or nuclear transfer embryos. We demonstrate the practicality of using iPS cells as useful tools for the characterization of cellular reprogramming and developmental potency, and confirm that iPS cells can attain true pluripotency that is similar to that of ES cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhao, Xiao-yang -- Li, Wei -- Lv, Zhuo -- Liu, Lei -- Tong, Man -- Hai, Tang -- Hao, Jie -- Guo, Chang-long -- Ma, Qing-wen -- Wang, Liu -- Zeng, Fanyi -- Zhou, Qi -- England -- Nature. 2009 Sep 3;461(7260):86-90. doi: 10.1038/nature08267.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉State Key Laboratory of Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19672241" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blastocyst/cytology/physiology ; Cell Dedifferentiation/physiology ; Cell Line ; Cell Lineage ; Cellular Reprogramming ; Embryo, Mammalian/cytology/embryology/metabolism ; Embryonic Stem Cells/cytology/physiology ; Female ; Fibroblasts/cytology ; Gene Expression Profiling ; Genetic Complementation Test ; Male ; Mice ; Mice, SCID ; Pluripotent Stem Cells/cytology/*physiology ; *Polyploidy ; Pregnancy ; *Reproductive Techniques ; Survival Rate ; Teratoma
    Print ISSN: 0028-0836
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    Reproductive skew and selection on female ornamentation in social species (2009)
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    Publication Date: 2009-12-17
    Description: Male animals are typically more elaborately ornamented than females. Classic sexual selection theory notes that because sperm are cheaper to produce than eggs, and because males generally compete more intensely for reproductive opportunities and invest less in parental care than females, males can obtain greater fitness benefits from mating multiply. Therefore, sexual selection typically results in male-biased sex differences in secondary sexual characters. This generality has recently been questioned, because in cooperatively breeding vertebrates, the strength of selection on traits used in intrasexual competition for access to mates (sexual selection) or other resources linked to reproduction (social selection) is similar in males and females. Because selection is acting with comparable intensity in both sexes in cooperatively breeding species, the degree of sexual dimorphism in traits used in intrasexual competition should be reduced in cooperative breeders. Here we use the socially diverse African starlings (Sturnidae) to demonstrate that the degree of sexual dimorphism in plumage and body size is reduced in cooperatively breeding species as a result of increased selection on females for traits that increase access to reproductive opportunities, other resources, or higher social status. In cooperative breeders such as these, where there is unequal sharing of reproduction (reproductive skew) among females, and where female dominance rank influences access to mates and other resources, intrasexual competition among females may be intense and ultimately select for female trait elaboration. Selection is thereby acting with different intensities on males and females in cooperatively versus non-cooperatively breeding species, and female-female interactions in group-living vertebrates will have important consequences for the evolution of female morphological, physiological and behavioural traits.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rubenstein, Dustin R -- Lovette, Irby J -- England -- Nature. 2009 Dec 10;462(7274):786-9. doi: 10.1038/nature08614.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Columbia University, Department of Ecology, Evolution and Environmental Biology, 10th Floor Schermerhorn Extension, 1200 Amsterdam Avenue, New York, New York 10027, USA. dr2497@columbia.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010686" target="_blank"〉PubMed〈/a〉
    Keywords: Africa ; Animals ; Bayes Theorem ; Body Size/physiology ; Competitive Behavior ; Cooperative Behavior ; Feathers/anatomy & histology/physiology ; Female ; Male ; Markov Chains ; Mating Preference, Animal/*physiology ; Monte Carlo Method ; Phylogeny ; Reproduction/*physiology ; Selection, Genetic ; *Sex Characteristics ; *Social Behavior ; Social Dominance ; Starlings/*anatomy & histology/*physiology ; Wings, Animal/anatomy & histology
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    A lifesaving arrangement (2009)
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    Publication Date: 2009-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 15;457(7227):236. doi: 10.1038/457236a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19148049" target="_blank"〉PubMed〈/a〉
    Keywords: *Acquired Immunodeficiency Syndrome/drug ; therapy/economics/epidemiology/prevention & control ; *Federal Government ; Female ; Humans ; International Cooperation ; *Leadership ; Male ; Sexual Abstinence ; United States/epidemiology
    Print ISSN: 0028-0836
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    Parental origin of sequence variants associated with complex diseases (2009)
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    Publication Date: 2009-12-18
    Description: Effects of susceptibility variants may depend on from which parent they are inherited. Although many associations between sequence variants and human traits have been discovered through genome-wide associations, the impact of parental origin has largely been ignored. Here we show that for 38,167 Icelanders genotyped using single nucleotide polymorphism (SNP) chips, the parental origin of most alleles can be determined. For this we used a combination of genealogy and long-range phasing. We then focused on SNPs that associate with diseases and are within 500 kilobases of known imprinted genes. Seven independent SNP associations were examined. Five-one with breast cancer, one with basal-cell carcinoma and three with type 2 diabetes-have parental-origin-specific associations. These variants are located in two genomic regions, 11p15 and 7q32, each harbouring a cluster of imprinted genes. Furthermore, we observed a novel association between the SNP rs2334499 at 11p15 and type 2 diabetes. Here the allele that confers risk when paternally inherited is protective when maternally transmitted. We identified a differentially methylated CTCF-binding site at 11p15 and demonstrated correlation of rs2334499 with decreased methylation of that site.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746295/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746295/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kong, Augustine -- Steinthorsdottir, Valgerdur -- Masson, Gisli -- Thorleifsson, Gudmar -- Sulem, Patrick -- Besenbacher, Soren -- Jonasdottir, Aslaug -- Sigurdsson, Asgeir -- Kristinsson, Kari Th -- Jonasdottir, Adalbjorg -- Frigge, Michael L -- Gylfason, Arnaldur -- Olason, Pall I -- Gudjonsson, Sigurjon A -- Sverrisson, Sverrir -- Stacey, Simon N -- Sigurgeirsson, Bardur -- Benediktsdottir, Kristrun R -- Sigurdsson, Helgi -- Jonsson, Thorvaldur -- Benediktsson, Rafn -- Olafsson, Jon H -- Johannsson, Oskar Th -- Hreidarsson, Astradur B -- Sigurdsson, Gunnar -- DIAGRAM Consortium -- Ferguson-Smith, Anne C -- Gudbjartsson, Daniel F -- Thorsteinsdottir, Unnur -- Stefansson, Kari -- 077016/Wellcome Trust/United Kingdom -- 090532/Wellcome Trust/United Kingdom -- G9723500/Medical Research Council/United Kingdom -- K08 AR055688/AR/NIAMS NIH HHS/ -- MC_U106179471/Medical Research Council/United Kingdom -- MC_U106179474/Medical Research Council/United Kingdom -- MC_U127592696/Medical Research Council/United Kingdom -- R01 DK029867/DK/NIDDK NIH HHS/ -- England -- Nature. 2009 Dec 17;462(7275):868-74. doi: 10.1038/nature08625.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉deCODE genetics, Sturlugata 8, 101 Reykjavik, Iceland. kong@decode.is〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20016592" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Binding Sites ; Breast Neoplasms/genetics ; Carcinoma, Basal Cell/genetics ; Chromosomes, Human, Pair 11/genetics ; Chromosomes, Human, Pair 7/genetics ; DNA Methylation/genetics ; Diabetes Mellitus, Type 2/genetics ; *Fathers ; Female ; Genetic Predisposition to Disease/*genetics ; Genome, Human/genetics ; Genomic Imprinting/genetics ; Haplotypes ; Humans ; Iceland ; Male ; *Mothers ; Pedigree ; Polymorphism, Single Nucleotide/*genetics ; Repressor Proteins/metabolism
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    Association of reactive oxygen species levels and radioresistance in cancer stem cells (2009)
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    Publication Date: 2009-02-06
    Description: The metabolism of oxygen, although central to life, produces reactive oxygen species (ROS) that have been implicated in processes as diverse as cancer, cardiovascular disease and ageing. It has recently been shown that central nervous system stem cells and haematopoietic stem cells and early progenitors contain lower levels of ROS than their more mature progeny, and that these differences are critical for maintaining stem cell function. We proposed that epithelial tissue stem cells and their cancer stem cell (CSC) counterparts may also share this property. Here we show that normal mammary epithelial stem cells contain lower concentrations of ROS than their more mature progeny cells. Notably, subsets of CSCs in some human and murine breast tumours contain lower ROS levels than corresponding non-tumorigenic cells (NTCs). Consistent with ROS being critical mediators of ionizing-radiation-induced cell killing, CSCs in these tumours develop less DNA damage and are preferentially spared after irradiation compared to NTCs. Lower ROS levels in CSCs are associated with increased expression of free radical scavenging systems. Pharmacological depletion of ROS scavengers in CSCs markedly decreases their clonogenicity and results in radiosensitization. These results indicate that, similar to normal tissue stem cells, subsets of CSCs in some tumours contain lower ROS levels and enhanced ROS defences compared to their non-tumorigenic progeny, which may contribute to tumour radioresistance.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2778612/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2778612/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Diehn, Maximilian -- Cho, Robert W -- Lobo, Neethan A -- Kalisky, Tomer -- Dorie, Mary Jo -- Kulp, Angela N -- Qian, Dalong -- Lam, Jessica S -- Ailles, Laurie E -- Wong, Manzhi -- Joshua, Benzion -- Kaplan, Michael J -- Wapnir, Irene -- Dirbas, Frederick M -- Somlo, George -- Garberoglio, Carlos -- Paz, Benjamin -- Shen, Jeannie -- Lau, Sean K -- Quake, Stephen R -- Brown, J Martin -- Weissman, Irving L -- Clarke, Michael F -- R01 CA100225/CA/NCI NIH HHS/ -- R01 CA100225-05/CA/NCI NIH HHS/ -- U54 CA126524/CA/NCI NIH HHS/ -- U54 CA126524-04/CA/NCI NIH HHS/ -- England -- Nature. 2009 Apr 9;458(7239):780-3. doi: 10.1038/nature07733.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Radiation Oncology, Stanford University School of Medicine, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19194462" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breast Neoplasms/physiopathology ; Cells, Cultured ; DNA Damage/genetics/radiation effects ; Female ; Gene Expression ; Humans ; Mammary Glands, Human/cytology/metabolism ; Mice ; Mice, Inbred C57BL ; Neoplastic Stem Cells/*metabolism/*radiation effects ; Radiation Tolerance/*physiology ; Reactive Oxygen Species/*metabolism
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    A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila (2009)
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    Publication Date: 2009-10-09
    Description: PIWI-interacting RNAs (piRNAs) silence retrotransposons in Drosophila germ lines by associating with the PIWI proteins Argonaute 3 (AGO3), Aubergine (Aub) and Piwi. piRNAs in Drosophila are produced from intergenic repetitive genes and piRNA clusters by two systems: the primary processing pathway and the amplification loop. The amplification loop occurs in a Dicer-independent, PIWI-Slicer-dependent manner. However, primary piRNA processing remains elusive. Here we analysed piRNA processing in a Drosophila ovarian somatic cell line where Piwi, but not Aub or AGO3, is expressed; thus, only the primary piRNAs exist. In addition to flamenco, a Piwi-specific piRNA cluster, traffic jam (tj), a large Maf gene, was determined as a new piRNA cluster. piRNAs arising from tj correspond to the untranslated regions of tj messenger RNA and are sense-oriented. piRNA loading on to Piwi may occur in the cytoplasm. zucchini, a gene encoding a putative cytoplasmic nuclease, is required for tj-derived piRNA production. In tj and piwi mutant ovaries, somatic cells fail to intermingle with germ cells and Fasciclin III is overexpressed. Loss of tj abolishes Piwi expression in gonadal somatic cells. Thus, in gonadal somatic cells, tj gives rise simultaneously to two different molecules: the TJ protein, which activates Piwi expression, and piRNAs, which define the Piwi targets for silencing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Saito, Kuniaki -- Inagaki, Sachi -- Mituyama, Toutai -- Kawamura, Yoshinori -- Ono, Yukiteru -- Sakota, Eri -- Kotani, Hazuki -- Asai, Kiyoshi -- Siomi, Haruhiko -- Siomi, Mikiko C -- England -- Nature. 2009 Oct 29;461(7268):1296-9. doi: 10.1038/nature08501. Epub 2009 Oct 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Keio University School of Medicine, Tokyo 160-8582, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19812547" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Argonaute Proteins ; Cell Adhesion Molecules, Neuronal/metabolism ; Cell Line ; Drosophila Proteins/genetics/*metabolism ; Drosophila melanogaster/genetics/*metabolism ; Endoribonucleases/metabolism ; Female ; Genes, Insect/genetics ; Genetic Loci/genetics ; Maf Transcription Factors, Large/genetics/*metabolism ; Male ; Ovary/cytology/metabolism ; Phenotype ; Proto-Oncogene Proteins/genetics/*metabolism ; RNA/biosynthesis/genetics/*metabolism ; RNA Interference ; RNA Processing, Post-Transcriptional ; RNA-Induced Silencing Complex/genetics/*metabolism ; Testis/cytology/metabolism
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    Human genomics: The genome finishers (2009)
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    Publication Date: 2009-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dolgin, Elie -- England -- Nature. 2009 Dec 17;462(7275):843-5. doi: 10.1038/462843a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20016572" target="_blank"〉PubMed〈/a〉
    Keywords: Female ; Genome, Human/*genetics ; History, 20th Century ; History, 21st Century ; *Human Genome Project/history ; Humans ; Male ; Reproducibility of Results ; Research Design ; *Research Personnel ; Research Subjects
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    Gain-of-function of mutated C-CBL tumour suppressor in myeloid neoplasms (2009)
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    Publication Date: 2009-07-22
    Description: Acquired uniparental disomy (aUPD) is a common feature of cancer genomes, leading to loss of heterozygosity. aUPD is associated not only with loss-of-function mutations of tumour suppressor genes, but also with gain-of-function mutations of proto-oncogenes. Here we show unique gain-of-function mutations of the C-CBL (also known as CBL) tumour suppressor that are tightly associated with aUPD of the 11q arm in myeloid neoplasms showing myeloproliferative features. The C-CBL proto-oncogene, a cellular homologue of v-Cbl, encodes an E3 ubiquitin ligase and negatively regulates signal transduction of tyrosine kinases. Homozygous C-CBL mutations were found in most 11q-aUPD-positive myeloid malignancies. Although the C-CBL mutations were oncogenic in NIH3T3 cells, c-Cbl was shown to functionally and genetically act as a tumour suppressor. C-CBL mutants did not have E3 ubiquitin ligase activity, but inhibited that of wild-type C-CBL and CBL-B (also known as CBLB), leading to prolonged activation of tyrosine kinases after cytokine stimulation. c-Cbl(-/-) haematopoietic stem/progenitor cells (HSPCs) showed enhanced sensitivity to a variety of cytokines compared to c-Cbl(+/+) HSPCs, and transduction of C-CBL mutants into c-Cbl(-/-) HSPCs further augmented their sensitivities to a broader spectrum of cytokines, including stem-cell factor (SCF, also known as KITLG), thrombopoietin (TPO, also known as THPO), IL3 and FLT3 ligand (FLT3LG), indicating the presence of a gain-of-function that could not be attributed to a simple loss-of-function. The gain-of-function effects of C-CBL mutants on cytokine sensitivity of HSPCs largely disappeared in a c-Cbl(+/+) background or by co-transduction of wild-type C-CBL, which suggests the pathogenic importance of loss of wild-type C-CBL alleles found in most cases of C-CBL-mutated myeloid neoplasms. Our findings provide a new insight into a role of gain-of-function mutations of a tumour suppressor associated with aUPD in the pathogenesis of some myeloid cancer subsets.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanada, Masashi -- Suzuki, Takahiro -- Shih, Lee-Yung -- Otsu, Makoto -- Kato, Motohiro -- Yamazaki, Satoshi -- Tamura, Azusa -- Honda, Hiroaki -- Sakata-Yanagimoto, Mamiko -- Kumano, Keiki -- Oda, Hideaki -- Yamagata, Tetsuya -- Takita, Junko -- Gotoh, Noriko -- Nakazaki, Kumi -- Kawamata, Norihiko -- Onodera, Masafumi -- Nobuyoshi, Masaharu -- Hayashi, Yasuhide -- Harada, Hiroshi -- Kurokawa, Mineo -- Chiba, Shigeru -- Mori, Hiraku -- Ozawa, Keiya -- Omine, Mitsuhiro -- Hirai, Hisamaru -- Nakauchi, Hiromitsu -- Koeffler, H Phillip -- Ogawa, Seishi -- 2R01CA026038-30/CA/NCI NIH HHS/ -- England -- Nature. 2009 Aug 13;460(7257):904-8. doi: 10.1038/nature08240. Epub 2009 Jul 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cancer Genomics Project, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19620960" target="_blank"〉PubMed〈/a〉
    Keywords: Allelic Imbalance ; Amino Acid Sequence ; Animals ; Base Sequence ; Chromosomes, Human, Pair 11/genetics ; Female ; *Genes, Tumor Suppressor ; Humans ; Leukemia, Myeloid/*genetics/metabolism/pathology ; Male ; Mice ; Mice, Knockout ; Mice, Nude ; Models, Molecular ; Molecular Sequence Data ; Mutant Proteins/chemistry/genetics/*metabolism ; Mutation ; NIH 3T3 Cells ; Neoplasm Transplantation ; Oncogenes/genetics ; Phosphorylation ; Protein Conformation ; Proto-Oncogene Proteins c-cbl/antagonists & ; inhibitors/chemistry/deficiency/*genetics/*metabolism ; Ubiquitination ; Uniparental Disomy/genetics ; ras Proteins/genetics/metabolism
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    Central control of fever and female body temperature by RANKL/RANK (2009)
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    Publication Date: 2009-11-27
    Description: Receptor-activator of NF-kappaB ligand (TNFSF11, also known as RANKL, OPGL, TRANCE and ODF) and its tumour necrosis factor (TNF)-family receptor RANK are essential regulators of bone remodelling, lymph node organogenesis and formation of a lactating mammary gland. RANKL and RANK are also expressed in the central nervous system. However, the functional relevance of RANKL/RANK in the brain was entirely unknown. Here we report that RANKL and RANK have an essential role in the brain. In both mice and rats, central RANKL injections trigger severe fever. Using tissue-specific Nestin-Cre and GFAP-Cre rank(floxed) deleter mice, the function of RANK in the fever response was genetically mapped to astrocytes. Importantly, Nestin-Cre and GFAP-Cre rank(floxed) deleter mice are resistant to lipopolysaccharide-induced fever as well as fever in response to the key inflammatory cytokines IL-1beta and TNFalpha. Mechanistically, RANKL activates brain regions involved in thermoregulation and induces fever via the COX2-PGE(2)/EP3R pathway. Moreover, female Nestin-Cre and GFAP-Cre rank(floxed) mice exhibit increased basal body temperatures, suggesting that RANKL and RANK control thermoregulation during normal female physiology. We also show that two children with RANK mutations exhibit impaired fever during pneumonia. These data identify an entirely novel and unexpected function for the key osteoclast differentiation factors RANKL/RANK in female thermoregulation and the central fever response in inflammation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hanada, Reiko -- Leibbrandt, Andreas -- Hanada, Toshikatsu -- Kitaoka, Shiho -- Furuyashiki, Tomoyuki -- Fujihara, Hiroaki -- Trichereau, Jean -- Paolino, Magdalena -- Qadri, Fatimunnisa -- Plehm, Ralph -- Klaere, Steffen -- Komnenovic, Vukoslav -- Mimata, Hiromitsu -- Yoshimatsu, Hironobu -- Takahashi, Naoyuki -- von Haeseler, Arndt -- Bader, Michael -- Kilic, Sara Sebnem -- Ueta, Yoichi -- Pifl, Christian -- Narumiya, Shuh -- Penninger, Josef M -- England -- Nature. 2009 Nov 26;462(7272):505-9. doi: 10.1038/nature08596.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉IMBA, Institute of Molecular Biotechnology of the Austrian Academy of Sciences, 1030 Vienna, Austria.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19940926" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Astrocytes/drug effects/metabolism ; Body Temperature Regulation/*drug effects/*physiology ; Child ; Dinoprostone/metabolism ; Female ; Fever/*chemically induced/complications/*metabolism ; Gene Expression Profiling ; Humans ; Injections, Intraventricular ; Male ; Mice ; Mice, Inbred C57BL ; Pneumonia/complications/metabolism ; RANK Ligand/administration & dosage/antagonists & ; inhibitors/metabolism/*pharmacology ; Rats ; Rats, Wistar ; Receptor Activator of Nuclear Factor-kappa B/genetics/*metabolism ; Receptors, Prostaglandin E/metabolism ; Receptors, Prostaglandin E, EP3 Subtype ; *Sex Characteristics
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    The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting (2009)
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    Publication Date: 2009-06-19
    Description: Pluripotency of embryonic stem (ES) cells is controlled by defined transcription factors. During differentiation, mouse ES cells undergo global epigenetic reprogramming, as exemplified by X-chromosome inactivation (XCI) in which one female X chromosome is silenced to achieve gene dosage parity between the sexes. Somatic XCI is regulated by homologous X-chromosome pairing and counting, and by the random choice of future active and inactive X chromosomes. XCI and cell differentiation are tightly coupled, as blocking one process compromises the other and dedifferentiation of somatic cells to induced pluripotent stem cells is accompanied by X chromosome reactivation. Recent evidence suggests coupling of Xist expression to pluripotency factors occurs, but how the two are interconnected remains unknown. Here we show that Oct4 (also known as Pou5f1) lies at the top of the XCI hierarchy, and regulates XCI by triggering X-chromosome pairing and counting. Oct4 directly binds Tsix and Xite, two regulatory noncoding RNA genes of the X-inactivation centre, and also complexes with XCI trans-factors, Ctcf and Yy1 (ref. 17), through protein-protein interactions. Depletion of Oct4 blocks homologous X-chromosome pairing and results in the inactivation of both X chromosomes in female cells. Thus, we have identified the first trans-factor that regulates counting, and ascribed new functions to Oct4 during X-chromosome reprogramming.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3057664/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3057664/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Donohoe, Mary E -- Silva, Susana S -- Pinter, Stefan F -- Xu, Na -- Lee, Jeannie T -- GM58839/GM/NIGMS NIH HHS/ -- R01 GM058839/GM/NIGMS NIH HHS/ -- R01 GM058839-10/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Jul 2;460(7251):128-32. doi: 10.1038/nature08098. Epub 2009 Jun 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19536159" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; *Chromosome Pairing ; Female ; Humans ; Male ; Mice ; Octamer Transcription Factor-3/deficiency/genetics/*metabolism ; Protein Binding ; RNA, Long Noncoding ; RNA, Untranslated/genetics ; Repressor Proteins/*metabolism ; SOXB1 Transcription Factors ; Transcriptional Activation ; X Chromosome/*genetics/*metabolism ; X Chromosome Inactivation/*genetics ; YY1 Transcription Factor/metabolism
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    Dendritic encoding of sensory stimuli controlled by deep cortical interneurons (2009)
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    Publication Date: 2009-01-20
    Description: The computational power of single neurons is greatly enhanced by active dendritic conductances that have a large influence on their spike activity. In cortical output neurons such as the large pyramidal cells of layer 5 (L5), activation of apical dendritic calcium channels leads to plateau potentials that increase the gain of the input/output function and switch the cell to burst-firing mode. The apical dendrites are innervated by local excitatory and inhibitory inputs as well as thalamic and corticocortical projections, which makes it a formidable task to predict how these inputs influence active dendritic properties in vivo. Here we investigate activity in populations of L5 pyramidal dendrites of the somatosensory cortex in awake and anaesthetized rats following sensory stimulation using a new fibre-optic method for recording dendritic calcium changes. We show that the strength of sensory stimulation is encoded in the combined dendritic calcium response of a local population of L5 pyramidal cells in a graded manner. The slope of the stimulus-response function was under the control of a particular subset of inhibitory neurons activated by synaptic inputs predominantly in L5. Recordings from single apical tuft dendrites in vitro showed that activity in L5 pyramidal neurons disynaptically coupled via interneurons directly blocks the initiation of dendritic calcium spikes in neighbouring pyramidal neurons. The results constitute a functional description of a cortical microcircuit in awake animals that relies on the active properties of L5 pyramidal dendrites and their very high sensitivity to inhibition. The microcircuit is organized so that local populations of apical dendrites can adaptively encode bottom-up sensory stimuli linearly across their full dynamic range.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Murayama, Masanori -- Perez-Garci, Enrique -- Nevian, Thomas -- Bock, Tobias -- Senn, Walter -- Larkum, Matthew E -- England -- Nature. 2009 Feb 26;457(7233):1137-41. doi: 10.1038/nature07663. Epub 2009 Jan 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Physiologisches Institut, Universitat Bern, Buhlplatz 5, CH-3012 Bern, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19151696" target="_blank"〉PubMed〈/a〉
    Keywords: Anesthesia ; Animals ; Calcium/metabolism ; Dendrites/*physiology ; Electric Stimulation ; Excitatory Postsynaptic Potentials/physiology ; Female ; Interneurons/*physiology ; Models, Neurological ; Rats ; Rats, Wistar ; Somatosensory Cortex/*cytology/*physiology ; Wakefulness/physiology
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    Big interest in heavy drugs (2009)
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    Publication Date: 2009-03-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanderson, Katharine -- England -- Nature. 2009 Mar 19;458(7236):269. doi: 10.1038/458269a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19295573" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials, Phase I as Topic ; Cyclohexanols/chemistry/economics/pharmacokinetics ; Deuterium/*chemistry ; Drug Industry/*economics ; Female ; Humans ; Paroxetine/analogs & derivatives/chemistry/economics/pharmacokinetics ; Patents as Topic/legislation & jurisprudence ; Pharmaceutical Preparations/*chemistry/economics/*metabolism ; Venlafaxine Hydrochloride
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    Advances in development reverse fertility declines (2009)
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    Publication Date: 2009-08-08
    Description: During the twentieth century, the global population has gone through unprecedented increases in economic and social development that coincided with substantial declines in human fertility and population growth rates. The negative association of fertility with economic and social development has therefore become one of the most solidly established and generally accepted empirical regularities in the social sciences. As a result of this close connection between development and fertility decline, more than half of the global population now lives in regions with below-replacement fertility (less than 2.1 children per woman). In many highly developed countries, the trend towards low fertility has also been deemed irreversible. Rapid population ageing, and in some cases the prospect of significant population decline, have therefore become a central socioeconomic concern and policy challenge. Here we show, using new cross-sectional and longitudinal analyses of the total fertility rate and the human development index (HDI), a fundamental change in the well-established negative relationship between fertility and development as the global population entered the twenty-first century. Although development continues to promote fertility decline at low and medium HDI levels, our analyses show that at advanced HDI levels, further development can reverse the declining trend in fertility. The previously negative development-fertility relationship has become J-shaped, with the HDI being positively associated with fertility among highly developed countries. This reversal of fertility decline as a result of continued economic and social development has the potential to slow the rates of population ageing, thereby ameliorating the social and economic problems that have been associated with the emergence and persistence of very low fertility.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Myrskyla, Mikko -- Kohler, Hans-Peter -- Billari, Francesco C -- England -- Nature. 2009 Aug 6;460(7256):741-3. doi: 10.1038/nature08230.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Population Studies Center, University of Pennsylvania, 3718 Locust Walk, Philadelphia, Pennsylvania 19104, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19661915" target="_blank"〉PubMed〈/a〉
    Keywords: Age Distribution ; *Birth Rate/trends ; Cross-Sectional Studies ; Developed Countries/economics/*statistics & numerical data ; Education ; Female ; Fertility/physiology ; History, 20th Century ; History, 21st Century ; Humans ; Income ; Life Expectancy ; Longitudinal Studies ; Male ; Maternal Age ; *Population Growth ; Reproductive Behavior/history/*statistics & numerical data ; Technology/history/statistics & numerical data/trends
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    No final answers yet on sex determination in birds (2009)
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    Publication Date: 2009-11-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kuroiwa, Asato -- England -- Nature. 2009 Nov 5;462(7269):34. doi: 10.1038/462034b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19890307" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Avian Proteins/genetics ; Chick Embryo ; Chickens/*genetics ; Female ; Humans ; Male ; *Models, Biological ; Sex Chromosomes/genetics ; *Sex Determination Processes ; Testis/embryology/metabolism ; Transcription Factors/*genetics
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    CD8(+) T lymphocyte mobilization to virus-infected tissue requires CD4(+) T-cell help (2009)
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    Publication Date: 2009-11-10
    Description: CD4(+) T helper cells are well known for their role in providing critical signals during priming of cytotoxic CD8(+) T lymphocyte (CTL) responses in vivo. T-cell help is required for the generation of primary CTL responses as well as in promoting protective CD8(+) memory T-cell development. However, the role of CD4 help in the control of CTL responses at the effector stage is unknown. Here we show that fully helped effector CTLs are themselves not self-sufficient for entry into the infected tissue, but rely on the CD4(+) T cells to provide the necessary cue. CD4(+) T helper cells control the migration of CTL indirectly through the secretion of IFN-gamma and induction of local chemokine secretion in the infected tissue. Our results reveal a previously unappreciated role of CD4 help in mobilizing effector CTL to the peripheral sites of infection where they help to eliminate infected cells.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2789415/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2789415/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nakanishi, Yusuke -- Lu, Bao -- Gerard, Craig -- Iwasaki, Akiko -- AI054359/AI/NIAID NIH HHS/ -- AI062428/AI/NIAID NIH HHS/ -- AI39759/AI/NIAID NIH HHS/ -- HL51366/HL/NHLBI NIH HHS/ -- R01 AI054359/AI/NIAID NIH HHS/ -- R01 AI054359-06A2/AI/NIAID NIH HHS/ -- R01 AI062428/AI/NIAID NIH HHS/ -- R01 AI062428-05/AI/NIAID NIH HHS/ -- England -- Nature. 2009 Nov 26;462(7272):510-3. doi: 10.1038/nature08511. Epub 2009 Nov 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunobiology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19898495" target="_blank"〉PubMed〈/a〉
    Keywords: Adoptive Transfer ; Animals ; Chemokines/immunology/secretion ; *Chemotaxis ; Female ; Herpes Simplex/immunology/virology ; Herpesvirus 2, Human/*immunology ; Immunity, Mucosal/immunology ; Interferon-gamma/antagonists & inhibitors/immunology/secretion ; Mice ; Mice, Inbred C57BL ; Models, Immunological ; Mucous Membrane/immunology/virology ; Receptors, CXCR3/metabolism ; T-Lymphocytes, Cytotoxic/*cytology/*immunology ; T-Lymphocytes, Helper-Inducer/*immunology/secretion ; Vagina/*immunology/*virology
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    An anatomical signature for literacy (2009)
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    Publication Date: 2009-10-16
    Description: Language is a uniquely human ability that evolved at some point in the roughly 6,000,000 years since human and chimpanzee lines diverged. Even in the most linguistically impoverished environments, children naturally develop sophisticated language systems. In contrast, reading is a learnt skill that does not develop without intensive tuition and practice. Learning to read is likely to involve ontogenic structural brain changes, but these are nearly impossible to isolate in children owing to concurrent biological, environmental and social maturational changes. In Colombia, guerrillas are re-integrating into mainstream society and learning to read for the first time as adults. This presents a unique opportunity to investigate how literacy changes the brain, without the maturational complications present in children. Here we compare structural brain scans from those who learnt to read as adults (late-literates) with those from a carefully matched set of illiterates. Late-literates had more white matter in the splenium of the corpus callosum and more grey matter in bilateral angular, dorsal occipital, middle temporal, left supramarginal and superior temporal gyri. The importance of these brain regions for skilled reading was investigated in early literates, who learnt to read as children. We found anatomical connections linking the left and right angular and dorsal occipital gyri through the area of the corpus callosum where white matter was higher in late-literates than in illiterates; that reading, relative to object naming, increased the interhemispheric functional connectivity between the left and right angular gyri; and that activation in the left angular gyrus exerts top-down modulation on information flow from the left dorsal occipital gyrus to the left supramarginal gyrus. These findings demonstrate how the regions identified in late-literates interact during reading, relative to object naming, in early literates.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Carreiras, Manuel -- Seghier, Mohamed L -- Baquero, Silvia -- Estevez, Adelina -- Lozano, Alfonso -- Devlin, Joseph T -- Price, Cathy J -- 082420/Wellcome Trust/United Kingdom -- Wellcome Trust/United Kingdom -- England -- Nature. 2009 Oct 15;461(7266):983-6. doi: 10.1038/nature08461.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Basque Center on Cognition Brain and Language, Donostia-San Sebastian 20009, Spain [2] IKERBASQUE, Basque Foundation for Science, Bilbao 48011, Spain. m.carreiras@bcbl.eu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19829380" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Adult ; Aged ; Brain/*anatomy & histology/*physiology ; Child ; Colombia ; Corpus Callosum/anatomy & histology/physiology ; Educational Status ; Female ; Humans ; Language ; Magnetic Resonance Imaging ; Male ; Middle Aged ; Models, Neurological ; Neural Pathways/physiology ; *Reading ; Speech/physiology ; Young Adult
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    Secreted semaphorins control spine distribution and morphogenesis in the postnatal CNS (2009)
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    Publication Date: 2009-12-17
    Description: The majority of excitatory synapses in the mammalian CNS (central nervous system) are formed on dendritic spines, and spine morphology and distribution are critical for synaptic transmission, synaptic integration and plasticity. Here, we show that a secreted semaphorin, Sema3F, is a negative regulator of spine development and synaptic structure. Mice with null mutations in genes encoding Sema3F, and its holoreceptor components neuropilin-2 (Npn-2, also known as Nrp2) and plexin A3 (PlexA3, also known as Plxna3), exhibit increased dentate gyrus (DG) granule cell (GC) and cortical layer V pyramidal neuron spine number and size, and also aberrant spine distribution. Moreover, Sema3F promotes loss of spines and excitatory synapses in dissociated neurons in vitro, and in Npn-2(-/-) brain slices cortical layer V and DG GCs exhibit increased mEPSC (miniature excitatory postsynaptic current) frequency. In contrast, a distinct Sema3A-Npn-1/PlexA4 signalling cascade controls basal dendritic arborization in layer V cortical neurons, but does not influence spine morphogenesis or distribution. These disparate effects of secreted semaphorins are reflected in the restricted dendritic localization of Npn-2 to apical dendrites and of Npn-1 (also known as Nrp1) to all dendrites of cortical pyramidal neurons. Therefore, Sema3F signalling controls spine distribution along select dendritic processes, and distinct secreted semaphorin signalling events orchestrate CNS connectivity through the differential control of spine morphogenesis, synapse formation, and the elaboration of dendritic morphology.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2842559/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2842559/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tran, Tracy S -- Rubio, Maria E -- Clem, Roger L -- Johnson, Dontais -- Case, Lauren -- Tessier-Lavigne, Marc -- Huganir, Richard L -- Ginty, David D -- Kolodkin, Alex L -- F32 NS051003/NS/NINDS NIH HHS/ -- P50 MH06883/MH/NIMH NIH HHS/ -- R01 DC-006881/DC/NIDCD NIH HHS/ -- R01 MH059199/MH/NIMH NIH HHS/ -- R01 MH059199-07/MH/NIMH NIH HHS/ -- R01 MH059199-08/MH/NIMH NIH HHS/ -- R01 MH059199-09/MH/NIMH NIH HHS/ -- R01 MH059199-10/MH/NIMH NIH HHS/ -- R01 MH59199/MH/NIMH NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Dec 24;462(7276):1065-9. doi: 10.1038/nature08628. Epub 2009 Dec 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Solomon H. Snyder Department of Neuroscience, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010807" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Central Nervous System/cytology/drug effects/*growth & ; development/*metabolism/ultrastructure ; Female ; Gene Expression Regulation, Developmental ; Male ; Mice ; Mice, Knockout ; Neuropilin-1/metabolism ; Neuropilin-2/metabolism ; Pyramidal Cells/*cytology/drug effects/*growth & development/ultrastructure ; Recombinant Proteins/pharmacology ; Semaphorins/genetics/*metabolism/pharmacology ; Signal Transduction ; Synapses/drug effects/*physiology/ultrastructure
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    Idea of a love drug was no mystery to Shakespeare (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-02-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ehrenfeld, Joan G -- England -- Nature. 2009 Feb 26;457(7233):1079. doi: 10.1038/4571079d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19242450" target="_blank"〉PubMed〈/a〉
    Keywords: Aphrodisiacs/*history ; *Drama ; England ; Female ; History, 16th Century ; Humans ; *Literature, Modern ; *Love ; Male ; Wit and Humor as Topic
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    Biomechanical forces promote embryonic haematopoiesis (2009)
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    Publication Date: 2009-05-15
    Description: Biomechanical forces are emerging as critical regulators of embryogenesis, particularly in the developing cardiovascular system. After initiation of the heartbeat in vertebrates, cells lining the ventral aspect of the dorsal aorta, the placental vessels, and the umbilical and vitelline arteries initiate expression of the transcription factor Runx1 (refs 3-5), a master regulator of haematopoiesis, and give rise to haematopoietic cells. It remains unknown whether the biomechanical forces imposed on the vascular wall at this developmental stage act as a determinant of haematopoietic potential. Here, using mouse embryonic stem cells differentiated in vitro, we show that fluid shear stress increases the expression of Runx1 in CD41(+)c-Kit(+) haematopoietic progenitor cells, concomitantly augmenting their haematopoietic colony-forming potential. Moreover, we find that shear stress increases haematopoietic colony-forming potential and expression of haematopoietic markers in the para-aortic splanchnopleura/aorta-gonads-mesonephros of mouse embryos and that abrogation of nitric oxide, a mediator of shear-stress-induced signalling, compromises haematopoietic potential in vitro and in vivo. Collectively, these data reveal a critical role for biomechanical forces in haematopoietic development.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2782763/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2782763/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Adamo, Luigi -- Naveiras, Olaia -- Wenzel, Pamela L -- McKinney-Freeman, Shannon -- Mack, Peter J -- Gracia-Sancho, Jorge -- Suchy-Dicey, Astrid -- Yoshimoto, Momoko -- Lensch, M William -- Yoder, Mervin C -- Garcia-Cardena, Guillermo -- Daley, George Q -- R01 AI080759/AI/NIAID NIH HHS/ -- R01 AI080759-01/AI/NIAID NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Jun 25;459(7250):1131-5. doi: 10.1038/nature08073. Epub 2009 May 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Excellence in Vascular Biology, Department of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19440194" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aorta/cytology/embryology ; *Cell Differentiation ; Cell Line ; Cells, Cultured ; Core Binding Factor Alpha 2 Subunit/genetics ; Embryonic Stem Cells ; Endothelium-Dependent Relaxing Factors/pharmacology ; Female ; Gene Expression Regulation, Developmental ; Hematopoiesis/*physiology ; Hematopoietic Stem Cells/*cytology/drug effects ; Mice ; Nitric Oxide/pharmacology ; Pregnancy ; *Stress, Mechanical
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    Demography: Babies make a comeback (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-08-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tuljapurkar, Shripad -- England -- Nature. 2009 Aug 6;460(7256):693-4. doi: 10.1038/460693a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19661903" target="_blank"〉PubMed〈/a〉
    Keywords: Age Distribution ; *Birth Rate/trends ; Developed Countries/economics/*statistics & numerical data ; Education ; Female ; Fertility/physiology ; Humans ; Income ; Life Expectancy ; Male ; Maternal Age ; *Population Growth ; Reproductive Behavior/*statistics & numerical data
    Print ISSN: 0028-0836
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    Rapamycin fed late in life extends lifespan in genetically heterogeneous mice (2009)
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    Publication Date: 2009-07-10
    Description: Inhibition of the TOR signalling pathway by genetic or pharmacological intervention extends lifespan in invertebrates, including yeast, nematodes and fruitflies; however, whether inhibition of mTOR signalling can extend lifespan in a mammalian species was unknown. Here we report that rapamycin, an inhibitor of the mTOR pathway, extends median and maximal lifespan of both male and female mice when fed beginning at 600 days of age. On the basis of age at 90% mortality, rapamycin led to an increase of 14% for females and 9% for males. The effect was seen at three independent test sites in genetically heterogeneous mice, chosen to avoid genotype-specific effects on disease susceptibility. Disease patterns of rapamycin-treated mice did not differ from those of control mice. In a separate study, rapamycin fed to mice beginning at 270 days of age also increased survival in both males and females, based on an interim analysis conducted near the median survival point. Rapamycin may extend lifespan by postponing death from cancer, by retarding mechanisms of ageing, or both. To our knowledge, these are the first results to demonstrate a role for mTOR signalling in the regulation of mammalian lifespan, as well as pharmacological extension of lifespan in both genders. These findings have implications for further development of interventions targeting mTOR for the treatment and prevention of age-related diseases.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786175/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786175/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Harrison, David E -- Strong, Randy -- Sharp, Zelton Dave -- Nelson, James F -- Astle, Clinton M -- Flurkey, Kevin -- Nadon, Nancy L -- Wilkinson, J Erby -- Frenkel, Krystyna -- Carter, Christy S -- Pahor, Marco -- Javors, Martin A -- Fernandez, Elizabeth -- Miller, Richard A -- AG022303/AG/NIA NIH HHS/ -- AG022307/AG/NIA NIH HHS/ -- AG022308/AG/NIA NIH HHS/ -- AG025707/AG/NIA NIH HHS/ -- AG13319/AG/NIA NIH HHS/ -- P30 AG013319/AG/NIA NIH HHS/ -- P30 AG013319-119002/AG/NIA NIH HHS/ -- P30 AG013319-129002/AG/NIA NIH HHS/ -- P30 AG013319-139002/AG/NIA NIH HHS/ -- P30 AG013319-149002/AG/NIA NIH HHS/ -- P30 AG025707/AG/NIA NIH HHS/ -- U01 AG022303/AG/NIA NIH HHS/ -- U01 AG022307/AG/NIA NIH HHS/ -- U01 AG022307-01/AG/NIA NIH HHS/ -- U01 AG022307-02/AG/NIA NIH HHS/ -- U01 AG022307-03/AG/NIA NIH HHS/ -- U01 AG022307-04/AG/NIA NIH HHS/ -- U01 AG022307-05/AG/NIA NIH HHS/ -- U01 AG022307-05S1/AG/NIA NIH HHS/ -- U01 AG022308/AG/NIA NIH HHS/ -- England -- Nature. 2009 Jul 16;460(7253):392-5. doi: 10.1038/nature08221. Epub 2009 Jul 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Jackson Laboratory, Bar Harbor, Maine 04609, USA. david.harrison@jax.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19587680" target="_blank"〉PubMed〈/a〉
    Keywords: Administration, Oral ; Aging/*drug effects/genetics/*physiology ; Animals ; Carrier Proteins/antagonists & inhibitors/metabolism ; Diet ; Disease Susceptibility ; Female ; Longevity/*drug effects/*genetics/physiology ; Male ; Mice ; Phosphotransferases (Alcohol Group Acceptor)/antagonists & inhibitors/metabolism ; Sirolimus/*administration & dosage/*pharmacology ; Specific Pathogen-Free Organisms ; Survival Analysis ; TOR Serine-Threonine Kinases ; Time Factors
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    Human genetics: Tracing India's invisible threads (2009)
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    Publication Date: 2009-09-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chakravarti, Aravinda -- England -- Nature. 2009 Sep 24;461(7263):487-8. doi: 10.1038/461487a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19779444" target="_blank"〉PubMed〈/a〉
    Keywords: Asia/ethnology ; Continental Population Groups/genetics/history ; Ethnic Groups/*genetics/history ; Europe/ethnology ; Female ; Founder Effect ; Genetics, Population ; Genome, Human/genetics ; Genomics ; Genotype ; History, 16th Century ; History, 20th Century ; History, Ancient ; Humans ; India ; Language ; Male ; *Phylogeny ; Polymorphism, Single Nucleotide/genetics
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    An agenda for personalized medicine (2009)
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    Publication Date: 2009-10-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ng, Pauline C -- Murray, Sarah S -- Levy, Samuel -- Venter, J Craig -- England -- Nature. 2009 Oct 8;461(7265):724-6. doi: 10.1038/461724a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉J. Craig Venter Institute, Science Center Drive, San Diego, California 92121, USA. png@jcvi.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19812653" target="_blank"〉PubMed〈/a〉
    Keywords: Ethnic Groups/genetics ; False Negative Reactions ; Female ; Gene Frequency/genetics ; Genetic Counseling/methods/*standards ; Genetic Markers/genetics ; Genetic Predisposition to Disease/*genetics ; Genetic Testing/methods/*standards ; Genetics, Medical/methods/*standards ; Genome, Human/*genetics ; Genome-Wide Association Study ; Genotype ; Health Behavior ; Humans ; Male ; Odds Ratio ; Pharmacogenetics ; *Practice Guidelines as Topic ; Prospective Studies ; Reproducibility of Results ; Sequence Analysis, DNA/standards
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    Pelvic claspers confirm chondrichthyan-like internal fertilization in arthrodires (2009)
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    Publication Date: 2009-07-15
    Description: Recent finds demonstrate that internal fertilization and viviparity (live birth) were more widespread in the Placodermi, an extinct group of armoured fishes, than was previously realized. Placoderms represent the sister group of the crown group jawed vertebrates (Gnathostomata), making their mode(s) of reproduction potentially informative about primitive gnathostome conditions. An ossified pelvic fin basipterygium discovered in the arthrodire Incisoscutum ritchiei was hypothesized to be identical in males and females, with males presumed to have an additional cartilaginous element or series forming a clasper. Here we report the discovery of a completely ossified pelvic clasper in Incisoscutum ritchiei (WAM 03.3.28) which shows that this interpretation was incorrect: the basipterygium described previously is in fact unique to females. The male clasper is a slender rod attached to a square basal plate that articulates directly with the pelvis. It carries a small cap of dermal bone covered in denticles and small hooks that may be homologous with the much larger dermal component of the ptyctodont clasper.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ahlberg, Per -- Trinajstic, Kate -- Johanson, Zerina -- Long, John -- England -- Nature. 2009 Aug 13;460(7257):888-9. doi: 10.1038/nature08176. Epub 2009 Jul 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Subdepartment of Evolutionary Organismal Biology, Department of Physiology and Developmental Biology, Uppsala University, Norbyvagen 18A, 752 36 Uppsala, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19597477" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Structures/anatomy & histology/*physiology ; Animals ; Female ; Fertilization/*physiology ; Fishes/*anatomy & histology/*physiology ; Fossils ; History, Ancient ; Male ; Pelvis/anatomy & histology ; Viviparity, Nonmammalian/physiology
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    Robust discrimination between self and non-self neurites requires thousands of Dscam1 isoforms (2009)
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    Publication Date: 2009-10-02
    Description: Down Syndrome cell adhesion molecule (Dscam) genes encode neuronal cell recognition proteins of the immunoglobulin superfamily. In Drosophila, Dscam1 generates 19,008 different ectodomains by alternative splicing of three exon clusters, each encoding half or a complete variable immunoglobulin domain. Identical isoforms bind to each other, but rarely to isoforms differing at any one of the variable immunoglobulin domains. Binding between isoforms on opposing membranes promotes repulsion. Isoform diversity provides the molecular basis for neurite self-avoidance. Self-avoidance refers to the tendency of branches from the same neuron (self-branches) to selectively avoid one another. To ensure that repulsion is restricted to self-branches, different neurons express different sets of isoforms in a biased stochastic fashion. Genetic studies demonstrated that Dscam1 diversity has a profound role in wiring the fly brain. Here we show how many isoforms are required to provide an identification system that prevents non-self branches from inappropriately recognizing each other. Using homologous recombination, we generated mutant animals encoding 12, 24, 576 and 1,152 potential isoforms. Mutant animals with deletions encoding 4,752 and 14,256 isoforms were also analysed. Branching phenotypes were assessed in three classes of neurons. Branching patterns improved as the potential number of isoforms increased, and this was independent of the identity of the isoforms. Although branching defects in animals with 1,152 potential isoforms remained substantial, animals with 4,752 isoforms were indistinguishable from wild-type controls. Mathematical modelling studies were consistent with the experimental results that thousands of isoforms are necessary to ensure acquisition of unique Dscam1 identities in many neurons. We conclude that thousands of isoforms are essential to provide neurons with a robust discrimination mechanism to distinguish between self and non-self during self-avoidance.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836808/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836808/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hattori, Daisuke -- Chen, Yi -- Matthews, Benjamin J -- Salwinski, Lukasz -- Sabatti, Chiara -- Grueber, Wesley B -- Zipursky, S Lawrence -- F31 NS060341/NS/NINDS NIH HHS/ -- R01 DC006485/DC/NIDCD NIH HHS/ -- R01 DC006485-07/DC/NIDCD NIH HHS/ -- R01 HD040279/HD/NICHD NIH HHS/ -- R01 HD040279-05/HD/NICHD NIH HHS/ -- T32 HD007430/HD/NICHD NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Oct 1;461(7264):644-8. doi: 10.1038/nature08431.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Chemistry, Howard Hughes Medical Institute, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California 90095, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19794492" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Alternative Splicing ; Animals ; Brain/cytology/metabolism ; Cell Adhesion Molecules/*chemistry/genetics/*metabolism ; Drosophila Proteins/*chemistry/genetics/*metabolism ; Drosophila melanogaster/*cytology/genetics/*metabolism ; Female ; Male ; Models, Biological ; Mushroom Bodies/cytology/metabolism ; Neurites/*metabolism ; Protein Isoforms/chemistry/genetics/metabolism ; Sequence Deletion ; Stochastic Processes
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    Cardiovascular disease gets personal (2009)
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    Publication Date: 2009-08-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2009 Aug 20;460(7258):940-1. doi: 10.1038/460940a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19693052" target="_blank"〉PubMed〈/a〉
    Keywords: Anticoagulants/administration & dosage/adverse effects/therapeutic use ; Cardiovascular Diseases/*drug therapy/*genetics ; Clinical Trials as Topic ; Female ; Genetic Predisposition to Disease/*genetics ; Genetic Testing ; Genetic Variation ; Genome-Wide Association Study ; Genomics/trends ; Humans ; Pharmacogenetics/*trends ; Piperazines/administration & dosage/therapeutic use ; Platelet Aggregation Inhibitors/administration & dosage/adverse ; effects/therapeutic use ; Prasugrel Hydrochloride ; Thiophenes/administration & dosage/therapeutic use ; Ticlopidine/administration & dosage/adverse effects/analogs & ; derivatives/therapeutic use ; Warfarin/administration & dosage/adverse effects/therapeutic use
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    Bush's legacy: An unlikely champion (2009)
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    Publication Date: 2009-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2009 Jan 15;457(7227):254-6. doi: 10.1038/457254a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19148076" target="_blank"〉PubMed〈/a〉
    Keywords: *Federal Government ; Female ; *Global Health ; HIV Infections/*drug therapy/*economics/prevention & control ; Humans ; United States ; World Health Organization
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    Hybrid embryos fail to live up to stem-cell hopes (2009)
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    Publication Date: 2009-02-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2009 Feb 5;457(7230):642. doi: 10.1038/457642b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19205093" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cattle ; Cell Nucleus/metabolism ; Cellular Reprogramming/genetics/physiology ; Embryo, Mammalian/*cytology/*embryology ; Embryonic Stem Cells/*cytology ; Female ; Humans ; Mice ; *Nuclear Transfer Techniques ; Pluripotent Stem Cells/metabolism ; Rabbits ; Sheep ; Swine
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    Obesity: Be cool, lose weight (2009)
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    Publication Date: 2009-04-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Farmer, Stephen R -- England -- Nature. 2009 Apr 16;458(7240):839-40. doi: 10.1038/458839a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19370020" target="_blank"〉PubMed〈/a〉
    Keywords: Adipose Tissue, Brown/anatomy & histology/cytology/*metabolism ; *Cold Temperature ; Female ; Humans ; Male ; Obesity/drug therapy/*metabolism ; Sex Characteristics ; Weight Loss/*physiology
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    Modelling pathogenesis and treatment of familial dysautonomia using patient-specific iPSCs (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-08-21
    Description: The isolation of human induced pluripotent stem cells (iPSCs) offers a new strategy for modelling human disease. Recent studies have reported the derivation and differentiation of disease-specific human iPSCs. However, a key challenge in the field is the demonstration of disease-related phenotypes and the ability to model pathogenesis and treatment of disease in iPSCs. Familial dysautonomia (FD) is a rare but fatal peripheral neuropathy, caused by a point mutation in the IKBKAP gene involved in transcriptional elongation. The disease is characterized by the depletion of autonomic and sensory neurons. The specificity to the peripheral nervous system and the mechanism of neuron loss in FD are poorly understood owing to the lack of an appropriate model system. Here we report the derivation of patient-specific FD-iPSCs and the directed differentiation into cells of all three germ layers including peripheral neurons. Gene expression analysis in purified FD-iPSC-derived lineages demonstrates tissue-specific mis-splicing of IKBKAP in vitro. Patient-specific neural crest precursors express particularly low levels of normal IKBKAP transcript, suggesting a mechanism for disease specificity. FD pathogenesis is further characterized by transcriptome analysis and cell-based assays revealing marked defects in neurogenic differentiation and migration behaviour. Furthermore, we use FD-iPSCs for validating the potency of candidate drugs in reversing aberrant splicing and ameliorating neuronal differentiation and migration. Our study illustrates the promise of iPSC technology for gaining new insights into human disease pathogenesis and treatment.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784695/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784695/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Gabsang -- Papapetrou, Eirini P -- Kim, Hyesoo -- Chambers, Stuart M -- Tomishima, Mark J -- Fasano, Christopher A -- Ganat, Yosif M -- Menon, Jayanthi -- Shimizu, Fumiko -- Viale, Agnes -- Tabar, Viviane -- Sadelain, Michel -- Studer, Lorenz -- R01 NS052671/NS/NINDS NIH HHS/ -- R01 NS052671-03/NS/NINDS NIH HHS/ -- England -- Nature. 2009 Sep 17;461(7262):402-6. doi: 10.1038/nature08320. Epub 2009 Aug 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Developmental Biology Program, Sloan-Kettering Institute, 1275 York Ave, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19693009" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Alternative Splicing/drug effects/genetics ; Animals ; Carrier Proteins/genetics ; Cell Dedifferentiation ; Cell Differentiation ; Cell Lineage ; Cell Movement ; Cells, Cultured ; Child ; Dysautonomia, Familial/drug therapy/genetics/*pathology/*therapy ; Female ; Fibroblasts/cytology/metabolism ; Gene Expression Profiling ; Humans ; Kinetin/pharmacology/therapeutic use ; Male ; Mice ; *Models, Biological ; Neural Crest/cytology/drug effects ; Organ Specificity ; Phenotype ; Pluripotent Stem Cells/cytology/drug effects/*metabolism/*transplantation
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    Runx1 is required for the endothelial to haematopoietic cell transition but not thereafter (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-01-09
    Description: Haematopoietic stem cells (HSCs) are the founder cells of the adult haematopoietic system, and thus knowledge of the molecular program directing their generation during development is important for regenerative haematopoietic strategies. Runx1 is a pivotal transcription factor required for HSC generation in the vascular regions of the mouse conceptus-the aorta, vitelline and umbilical arteries, yolk sac and placenta. It is thought that HSCs emerge from vascular endothelial cells through the formation of intra-arterial clusters and that Runx1 functions during the transition from 'haemogenic endothelium' to HSCs. Here we show by conditional deletion that Runx1 activity in vascular-endothelial-cadherin-positive endothelial cells is indeed essential for intra-arterial cluster, haematopoietic progenitor and HSC formation in mice. In contrast, Runx1 is not required in cells expressing Vav1, one of the first pan-haematopoietic genes expressed in HSCs. Collectively these data show that Runx1 function is essential in endothelial cells for haematopoietic progenitor and HSC formation from the vasculature, but its requirement ends once or before Vav is expressed.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744041/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744041/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chen, Michael J -- Yokomizo, Tomomasa -- Zeigler, Brandon M -- Dzierzak, Elaine -- Speck, Nancy A -- CA23108/CA/NCI NIH HHS/ -- R01 CA058343/CA/NCI NIH HHS/ -- R01DK54077/DK/NIDDK NIH HHS/ -- R01HL091724/HL/NHLBI NIH HHS/ -- R37 DK054077/DK/NIDDK NIH HHS/ -- R37 DK054077-09/DK/NIDDK NIH HHS/ -- T32 AI-07519/AI/NIAID NIH HHS/ -- England -- Nature. 2009 Feb 12;457(7231):887-91. doi: 10.1038/nature07619. Epub 2009 Jan 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19129762" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, CD/metabolism ; Cadherins/metabolism ; *Cell Differentiation ; Core Binding Factor Alpha 2 Subunit/genetics/*metabolism ; Endothelial Cells/*cytology ; Female ; *Gene Expression Regulation, Developmental ; Hematopoietic Stem Cells/*cytology ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Transgenic ; Proto-Oncogene Proteins c-vav/metabolism
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    De novo establishment of wild-type song culture in the zebra finch (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-05-05
    Description: Culture is typically viewed as consisting of traits inherited epigenetically, through social learning. However, cultural diversity has species-typical constraints, presumably of genetic origin. A celebrated, if contentious, example is whether a universal grammar constrains syntactic diversity in human languages. Oscine songbirds exhibit song learning and provide biologically tractable models of culture: members of a species show individual variation in song and geographically separated groups have local song dialects. Different species exhibit distinct song cultures, suggestive of genetic constraints. Without such constraints, innovations and copying errors should cause unbounded variation over multiple generations or geographical distance, contrary to observations. Here we report an experiment designed to determine whether wild-type song culture might emerge over multiple generations in an isolated colony founded by isolates, and, if so, how this might happen and what type of social environment is required. Zebra finch isolates, unexposed to singing males during development, produce song with characteristics that differ from the wild-type song found in laboratory or natural colonies. In tutoring lineages starting from isolate founders, we quantified alterations in song across tutoring generations in two social environments: tutor-pupil pairs in sound-isolated chambers and an isolated semi-natural colony. In both settings, juveniles imitated the isolate tutors but changed certain characteristics of the songs. These alterations accumulated over learning generations. Consequently, songs evolved towards the wild-type in three to four generations. Thus, species-typical song culture can appear de novo. Our study has parallels with language change and evolution. In analogy to models in quantitative genetics, we model song culture as a multigenerational phenotype partly encoded genetically in an isolate founding population, influenced by environmental variables and taking multiple generations to emerge.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2693086/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2693086/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Feher, Olga -- Wang, Haibin -- Saar, Sigal -- Mitra, Partha P -- Tchernichovski, Ofer -- R01 DC004722/DC/NIDCD NIH HHS/ -- R01 DC004722-09/DC/NIDCD NIH HHS/ -- England -- Nature. 2009 May 28;459(7246):564-8. doi: 10.1038/nature07994. Epub 2009 May 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, City College, City University of New York, New York 10031, USA. olcifeher@gmail.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19412161" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; *Culture ; Female ; Finches/*physiology ; Instinct ; Learning/physiology ; Male ; *Models, Biological ; Social Isolation ; Vocalization, Animal/*physiology
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    Epigenetics: Ready for the marks (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-09-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Feil, Robert -- England -- Nature. 2009 Sep 17;461(7262):359-60. doi: 10.1038/461359a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19759613" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *DNA Methylation ; Embryo, Mammalian/cytology/embryology/metabolism ; Female ; *Genomic Imprinting ; Histones/*metabolism ; Humans ; Male ; Mice ; Oocytes/metabolism ; Oxidoreductases, N-Demethylating/*metabolism
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    Underwater acoustics: The neutrino and the whale (2009)
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    Publication Date: 2009-12-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nosengo, Nicola -- England -- Nature. 2009 Dec 3;462(7273):560-1. doi: 10.1038/462560a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19956234" target="_blank"〉PubMed〈/a〉
    Keywords: *Acoustics ; Animal Communication ; Animals ; Female ; Male ; Mediterranean Sea ; Seasons ; *Seawater ; Whales/*physiology
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    The AP-1 transcription factor Batf controls T(H)17 differentiation (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-07-07
    Description: Activator protein 1 (AP-1, also known as JUN) transcription factors are dimers of JUN, FOS, MAF and activating transcription factor (ATF) family proteins characterized by basic region and leucine zipper domains. Many AP-1 proteins contain defined transcriptional activation domains, but BATF and the closely related BATF3 (refs 2, 3) contain only a basic region and leucine zipper, and are considered to be inhibitors of AP-1 activity. Here we show that Batf is required for the differentiation of IL17-producing T helper (T(H)17) cells. T(H)17 cells comprise a CD4(+) T-cell subset that coordinates inflammatory responses in host defence but is pathogenic in autoimmunity. Batf(-/-) mice have normal T(H)1 and T(H)2 differentiation, but show a defect in T(H)17 differentiation, and are resistant to experimental autoimmune encephalomyelitis. Batf(-/-) T cells fail to induce known factors required for T(H)17 differentiation, such as RORgamma t (encoded by Rorc) and the cytokine IL21 (refs 14-17). Neither the addition of IL21 nor the overexpression of RORgamma t fully restores IL17 production in Batf(-/-) T cells. The Il17 promoter is BATF-responsive, and after T(H)17 differentiation, BATF binds conserved intergenic elements in the Il17a-Il17f locus and to the Il17, Il21 and Il22 (ref. 18) promoters. These results demonstrate that the AP-1 protein BATF has a critical role in T(H)17 differentiation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716014/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716014/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schraml, Barbara U -- Hildner, Kai -- Ise, Wataru -- Lee, Wan-Ling -- Smith, Whitney A-E -- Solomon, Ben -- Sahota, Gurmukh -- Sim, Julia -- Mukasa, Ryuta -- Cemerski, Saso -- Hatton, Robin D -- Stormo, Gary D -- Weaver, Casey T -- Russell, John H -- Murphy, Theresa L -- Murphy, Kenneth M -- AI035783/AI/NIAID NIH HHS/ -- AR049293/AR/NIAMS NIH HHS/ -- GM07200/GM/NIGMS NIH HHS/ -- HG00249/HG/NHGRI NIH HHS/ -- R01 HG000249/HG/NHGRI NIH HHS/ -- R01 HG000249-20/HG/NHGRI NIH HHS/ -- T32 GM008802/GM/NIGMS NIH HHS/ -- T32 GM008802-08/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Jul 16;460(7253):405-9. doi: 10.1038/nature08114. Epub 2009 Jul 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology and Immunology, Washington University School of Medicine, 660 South Euclid Avenue, Saint Louis, Missouri 63110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19578362" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Basic-Leucine Zipper Transcription Factors/deficiency/genetics/*metabolism ; *Cell Differentiation ; Encephalomyelitis, Autoimmune, Experimental/genetics ; Female ; Gene Expression Regulation ; Genetic Predisposition to Disease ; Interleukin-17/biosynthesis/genetics/*metabolism ; Interleukins/genetics/metabolism/pharmacology ; Lymph Nodes/metabolism ; Male ; Mice ; Nuclear Receptor Subfamily 1, Group F, Member 3 ; Promoter Regions, Genetic/genetics ; Receptors, Retinoic Acid/genetics/metabolism ; Receptors, Thyroid Hormone/genetics/metabolism ; T-Lymphocytes, Helper-Inducer/*cytology/*metabolism ; Transcription Factor AP-1/deficiency/genetics/*metabolism
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    E2f1-3 switch from activators in progenitor cells to repressors in differentiating cells (2009)
    Nature Publishing Group (NPG)
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    Publication Date: 2009-12-18
    Description: In the established model of mammalian cell cycle control, the retinoblastoma protein (Rb) functions to restrict cells from entering S phase by binding and sequestering E2f activators (E2f1, E2f2 and E2f3), which are invariably portrayed as the ultimate effectors of a transcriptional program that commit cells to enter and progress through S phase. Using a panel of tissue-specific cre-transgenic mice and conditional E2f alleles we examined the effects of E2f1, E2f2 and E2f3 triple deficiency in murine embryonic stem cells, embryos and small intestines. We show that in normal dividing progenitor cells E2f1-3 function as transcriptional activators, but contrary to the current view, are dispensable for cell division and instead are necessary for cell survival. In differentiating cells E2f1-3 function in a complex with Rb as repressors to silence E2f targets and facilitate exit from the cell cycle. The inactivation of Rb in differentiating cells resulted in a switch of E2f1-3 from repressors to activators, leading to the superactivation of E2f responsive targets and ectopic cell divisions. Loss of E2f1-3 completely suppressed these phenotypes caused by Rb deficiency. This work contextualizes the activator versus repressor functions of E2f1-3 in vivo, revealing distinct roles in dividing versus differentiating cells and in normal versus cancer-like cell cycles.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2806193/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2806193/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chong, Jean-Leon -- Wenzel, Pamela L -- Saenz-Robles, M Teresa -- Nair, Vivek -- Ferrey, Antoney -- Hagan, John P -- Gomez, Yorman M -- Sharma, Nidhi -- Chen, Hui-Zi -- Ouseph, Madhu -- Wang, Shu-Huei -- Trikha, Prashant -- Culp, Brian -- Mezache, Louise -- Winton, Douglas J -- Sansom, Owen J -- Chen, Danian -- Bremner, Rod -- Cantalupo, Paul G -- Robinson, Michael L -- Pipas, James M -- Leone, Gustavo -- 5 T32 CA106196-04/CA/NCI NIH HHS/ -- CA098956/CA/NCI NIH HHS/ -- P01CA097189/CA/NCI NIH HHS/ -- R01 CA098956/CA/NCI NIH HHS/ -- R01 CA098956-06A2/CA/NCI NIH HHS/ -- R01CA82259/CA/NCI NIH HHS/ -- R01CA85619/CA/NCI NIH HHS/ -- R01HD04470/HD/NICHD NIH HHS/ -- England -- Nature. 2009 Dec 17;462(7275):930-4. doi: 10.1038/nature08677.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Virology, Immunology and Medical Genetics, College of Medicine, The Ohio State University, Columbus, Ohio 43210, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20016602" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Apoptosis ; Cell Cycle/genetics/physiology ; *Cell Differentiation ; Cell Proliferation ; E2F Transcription Factors/deficiency/genetics/*metabolism ; E2F1 Transcription Factor/deficiency/genetics/metabolism ; E2F2 Transcription Factor/deficiency/genetics/metabolism ; E2F3 Transcription Factor/deficiency/genetics/metabolism ; Embryo, Mammalian/cytology/metabolism ; Embryonic Stem Cells/*cytology/*metabolism ; Female ; *Gene Expression Regulation ; Intestine, Small/cytology/metabolism ; Mice ; Mice, Transgenic ; Repressor Proteins/deficiency/genetics/*metabolism ; Retinoblastoma Protein/deficiency/metabolism
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    Inactivation of the Fto gene protects from obesity (2009)
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    Publication Date: 2009-02-24
    Description: Several independent, genome-wide association studies have identified a strong correlation between body mass index and polymorphisms in the human FTO gene. Common variants in the first intron define a risk allele predisposing to obesity, with homozygotes for the risk allele weighing approximately 3 kilograms more than homozygotes for the low risk allele. Nevertheless, the functional role of FTO in energy homeostasis remains elusive. Here we show that the loss of Fto in mice leads to postnatal growth retardation and a significant reduction in adipose tissue and lean body mass. The leanness of Fto-deficient mice develops as a consequence of increased energy expenditure and systemic sympathetic activation, despite decreased spontaneous locomotor activity and relative hyperphagia. Taken together, these experiments provide, to our knowledge, the first direct demonstration that Fto is functionally involved in energy homeostasis by the control of energy expenditure.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fischer, Julia -- Koch, Linda -- Emmerling, Christian -- Vierkotten, Jeanette -- Peters, Thomas -- Bruning, Jens C -- Ruther, Ulrich -- England -- Nature. 2009 Apr 16;458(7240):894-8. doi: 10.1038/nature07848. Epub 2009 Feb 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Animal Developmental and Molecular Biology, Heinrich Heine University, Universitatsstr. 1, D-40225 Dusseldorf, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19234441" target="_blank"〉PubMed〈/a〉
    Keywords: Adipose Tissue/metabolism ; Adiposity/genetics ; Animals ; Animals, Newborn ; Body Weight/genetics ; Brain/metabolism ; Eating/physiology ; Embryo, Mammalian/anatomy & histology/embryology ; Energy Metabolism/genetics/physiology ; Female ; Growth Disorders/genetics/physiopathology ; Homozygote ; Hyperphagia/genetics ; Insulin/metabolism ; Male ; Mice ; Mixed Function Oxygenases ; Motor Activity/genetics/physiology ; Obesity/*genetics/prevention & control ; Oxo-Acid-Lyases/*deficiency/genetics/*metabolism ; Phenotype ; Sympathetic Nervous System/physiology ; Thinness/*genetics
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    Animal behaviour: Birdsong normalized by culture (2009)
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    Publication Date: 2009-05-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fitch, W Tecumseh -- England -- Nature. 2009 May 28;459(7246):519-20. doi: 10.1038/459519a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19478774" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Child ; *Culture ; Female ; Finches/*physiology ; Humans ; Instinct ; *Language ; Learning/physiology ; Linguistics ; Male ; *Models, Biological ; Social Isolation ; Vocalization, Animal/*physiology
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    Stem cells: Fast and furious (2009)
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    Publication Date: 2009-04-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2009 Apr 23;458(7241):962-5. doi: 10.1038/458962a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19396119" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomedical Research/*trends ; Cellular Reprogramming/drug effects/*genetics/*physiology ; Competitive Behavior ; Drug Evaluation, Preclinical/methods/trends ; Embryonic Stem Cells/cytology/metabolism ; Female ; Humans ; Mice ; Pluripotent Stem Cells/*cytology/drug effects/*metabolism/pathology ; Safety ; Teratoma/pathology
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    KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints (2009)
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    Publication Date: 2009-09-04
    Description: Differential DNA methylation of the paternal and maternal alleles regulates the parental origin-specific expression of imprinted genes in mammals. The methylation imprints are established in male and female germ cells during gametogenesis, and the de novo DNA methyltransferase DNMT3A and its cofactor DNMT3L are required in this process. However, the mechanisms underlying locus- and parental-specific targeting of the de novo DNA methylation machinery in germline imprinting are poorly understood. Here we show that amine oxidase (flavin-containing) domain 1 (AOF1), a protein related to the lysine demethylase KDM1 (also known as LSD1), functions as a histone H3 lysine 4 (H3K4) demethylase and is required for de novo DNA methylation of some imprinted genes in oocytes. AOF1, now renamed lysine demethylase 1B (KDM1B) following a new nomenclature, is highly expressed in growing oocytes where genomic imprints are established. Targeted disruption of the gene encoding KDM1B had no effect on mouse development and oogenesis. However, oocytes from KDM1B-deficient females showed a substantial increase in H3K4 methylation and failed to set up the DNA methylation marks at four out of seven imprinted genes examined. Embryos derived from these oocytes showed biallelic expression or biallelic suppression of the affected genes and died before mid-gestation. Our results suggest that demethylation of H3K4 is critical for establishing the DNA methylation imprints during oogenesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ciccone, David N -- Su, Hui -- Hevi, Sarah -- Gay, Frederique -- Lei, Hong -- Bajko, Jeffrey -- Xu, Guoliang -- Li, En -- Chen, Taiping -- England -- Nature. 2009 Sep 17;461(7262):415-8. doi: 10.1038/nature08315. Epub 2009 Sep 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Epigenetics Program, Novartis Institutes for Biomedical Research, 250 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19727073" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; *DNA Methylation ; Embryo Loss/genetics ; Embryo, Mammalian/metabolism ; Female ; Gene Expression Regulation, Developmental ; Genes, Developmental/genetics ; *Genomic Imprinting ; Histones/*metabolism ; Male ; Mice ; *Mothers ; NIH 3T3 Cells ; Oocytes/metabolism ; Oxidoreductases, N-Demethylating/deficiency/genetics/*metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Nature Publishing Group (NPG)
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