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  • 1
    Publication Date: 2021-05-19
    Description: Barcodes are short segments of DNA that can be used to uniquely identify an unknown specimen to species, particularly when diagnostic morphological features are absent. These sequences could offer a new forensic tool in plant and animal conservation especially for endangered species. Ideally, barcodes could be used to positively identify illegally obtained material even in cases where diagnostic features have been purposefully removed or to release confiscated organisms into the proper breeding population. In the present study molecular data were used besides the morphological ones to introduce a specific barcode for six selected species of Shrimp. Based on the previous phylogenetics study, it has been proved that the mitochondrial COI gene in crustacean is a good discriminative marker at both inter- and intra-specific levels. In this regard, six species of shrimp (Fenoro penaeus indicus, Fenoro penaeus merguensis, penaeus semisulcatus, Metapenaeus affinis, Marsupenaeus japonicas, Fenoro penaeus penicillatus were collected from the Persian Gulf and Oman sea. After identification, the total DNA was extracted; COI gene was first amplified and then sequenced for each species. Finally the collected data were analyzed with the specific phylogenetic software. Molecular analysis revealed some degree of interpopulation differences but six good species were recognizable based on COI sequences. Also for population study molecular data of two species Penaeus semisulcatus and Metapenaeus affinis were analysed base on COI RFLP and 16SrRNA sequences respectively. The results would be helpful to protect shrimp species.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Commercial ; Morphological ; Population ; Genetic ; Shrimp ; Species ; DNA barcoding ; Partial sequencing ; mtDNA ; Molecular method ; PCR ; Fenoro penaeus indicus ; Fenoro penaeus merguensis ; Penaeus Semisulcatus ; Metapenaeus affinis ; Marsupenaeus japonicas ; Fenoro penaeus penicillatus
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 74pp.
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  • 2
    Publication Date: 2021-05-19
    Description: Neogobius caspius is a small benthic fish that is native to the Caspian Sea. The importance of this fish is because of it is role as a main food resource of the Sturgeon fish. The genetic diversity of N.caspius populations in the Caspian Sea was studied using microsatellite technique. In the study 95 Samples of Neogobius caspius from two regions (torkman port and Chalus) in south Caspian Sea were collected. DNA was extracted using 12 pairs of microstellite primers polymerase chain Reaction (PCR) was conducted. DNA Bands were analyzed using uvdoct and GenAlEx software package. Out of 12 microsatellite primers, 11 loci were produced, in which 5 of them were polymorphic ,6 monomorph and one of them showed smear. Average of observed and expected hetrozygosity was 0/798 and 0/843 respectively. Significant genetic differences between 2 regions was observed (P 0/01). Deviations from hardy- Weinberg equilibrium were in all cases. These results indicate that at least, 2 population of Neogobius caspius exist in the south Caspian sea.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Microsatellite ; Genetic ; Population ; Neogobius caspius ; Benthic ; Native ; Sturgeon ; Diversity ; Samples ; PCR
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 22pp.
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  • 3
    Publication Date: 2021-05-19
    Description: Hamoun fish, Schizothorax zarudnyi, is an indigenous species of the eastern waters of Iran, which is exclusively found in this region. However recently drought occurrence in the Chahnimeh reservoirs (a semi natural water body) making them vulnerable to extinction. As an appropriate action to address this problem and according to the 3 side contract between Italian Government – UNDP - Islamic republic of Iran Government and the Italian government financial support to reduce poverty in the Province of Sistan-Baluchestan through the reinforcement and dissemination of aquaculture activities the project was developed at the Hamoun Research Unit by the Chahbahar Fisheries Research Center to record the breeding normative of 1 g weight larvae for restocking and other researching purposes. 331 broodstocks of the indigenous species Shizothorax zarudnyi weighing 800-2450 g were collected from the Chahnimeh reservoirs in early autumn, 2006. From 5/3/2007 ( the project is supported and communicated on 2010) , Ovulation was stimulated with three stimulators; pituitary extract (3-6 mg kg-1 body weight), GnRH-A (20-30 mg kg-1 body weight) and anti dopamine (10-15 mg kg-1 body weight) that was given in 2-3 doses to breeders. Of 169 injected breeders , some were injected On mid March of 2007 (12-13 ºC water tempreture) responded to the injection 25% ,while the rest were injected On April of 2008 (14-16 ºC water tempreture) responded to the injection 65%. In the present project of 167 breeders 82 were female and 87 male. Totally 30 female breeders released their eggs in different stages. 20 female breeders released their eggs completely, 3 breeders released half of their eggs and 7 released 1/3 of their eggs. The male breeders just injected in the final dose of hormontrapy and all were ready for releasing sperms however the ovulation in female breeders occurs between 353-428 h ºC and after the final dose of injection. Ripe eggs were stripped from the females and fertilization was done by the dry method. Fertilized eggs were transferred to veis incubators and troughs. Incubation period for eggs differs and larvae hatch out after about 910 days at an average water temperature of 12.5 °C. Maintained at 13-14 °C, complete absorption of yolk sac in Shizothorax zarudnyi larvae occurred after 5-8 days. Larvae were fed with a mixture of powdered milk and egg yolk in this stage followed by decapsulated Artemia cysts and nauplii of Artemia and then on formulated starter diets used for carps . Because the ponds were not ready, larvae were maintained in troughs for about ten days before they were transferred to two 1200 m2 earthen ponds where they reached a body weight of about 1 g. They were then handed over to the Iranian Fisheries department in the region. Larvae were fed with the starter feed SFCO in the earthen ponds. About 350 thousand larvae were stocked in two earthen ponds. Based on the results of present study and other studies we may conclude that artificial breeding in Schizothorax can be successfully achieved at 14-16 ºC in flow through systems using hormone therapy (combination of GnRha and anti dopamine) and larvae could be easily cultured in earthen ponds. However this species exhibits lower growth rates as compared to carps its high expenses could have an important role in economical feasible.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Economical ; Hamoun fish ; Schizothorax zarudnyi ; Breeding ; Species ; Aquaculture ; Temperature ; Female ; Eggs ; Hormontrapy ; Sperm ; Ovulation ; Larvae ; Fisheries ; Earthen ponds
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 71pp.
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  • 4
    Publication Date: 2021-05-19
    Description: Population genetic structure of Vimba vimba persa was investigated using microsatellite markers from 4 regions along the Iranian coastline of Southern the Caspian Sea (Anzali lagoon & havigh River in Gilan province, BabolRoud River in Maz&eran province & GorganRoud River in Golestan province). Genomic DNA from 121 specimens was extracted from fin tissue by phenol-Chlorophorm method & PCR reaction was accomplished with 17 microsatellite primers, out of 17 microsatellite primers 14 loci were amplified, in which 10 of them were amplified with reasonable polymorphism & 4 were monomorphism. Totally 302 alleles were identified on average 7.5 Observed & expected heterozygosity averages were 0.80 & 0.77 respectively. Most cases significantly deviated from Hardy-Weinberg equilibrium (p 0.01). The estimation of Fst (p 0.01) revealed significant population structuring & estimate four population of Vimba vimba persa is identified in the Caspian Sea. These studies were to apply & develop population genetic approaches to assist conservation, sustainable harvest & restocking of these populations.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Vimba vimba persa ; Population ; Genetic ; Microsatellite ; DNA ; Genomic ; Specimens ; PCR ; Equilibrium ; Restocking
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 61pp.
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  • 5
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    Publication Date: 2021-05-19
    Description: An attempt was made to isolate a growth hormone cDNA using a PCR procedure. Two different sequences (219 bp and 319bp) that were obtained using a cDNA approach do not seem to correspond with the growth hormone gene sequence though they have some homology with it. Only a few genes have been sequenced up to now in Russian. Sturgeon (Acipenser gueldenstadti) thus the two sequences studied be useful both for population and phylogenetic studies of Russian sturgeon (Acipenser gueldenstadti).
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Acipenser gueldenstadti ; Russian sturgeon ; PCR ; Hormone ; Gene ; Growth
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 49pp.
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  • 6
    Publication Date: 2021-05-19
    Description: Two of the three objectives of project was carried out success that one of them is following: The genetic diversity of Liza salien(Risso,1810) in the south part of Caspian sea using the Mitochondrial DNA sequencing (mtDNA) was carried out as first objective of project that based on the mitochondrial DNA sequencing (mtDNA) of 16S rRNA was used in order to clarify genetic structure and genetic diversity of lizasaliens in three western (Anzali) , middle(sari) , and eastern(Gomishan lagoon) of south part of Caspian sea. As a result we obtained 552base pairs of 16SrRNA sequence. A total of 6 different haplotypes and 29 variable sites were identified .The average nucleotide diversity(π) and haplotype diversity(h) in samples of all regions were 0.29 , and 0.004 respectively . The results obtained from genetic distance showed low rate in that of 3 regions. Estimates of gene flow indicated there is no reproductive isolation between three regions and also there was not significant genetic differentiation between differentregions (p〉0.05). the findings from the present study suggest that there is equal population of Liza saliens in the studied regions .: Genetic differences and phylogenic relationships among six Mugilidae species (Mugilcephalus, M. capito, Liza subviridis, L. saliens, L. aurata, Valamugilbuchanani) were determined using PCR-sequencing as second objective of project. M. cephalus, L. subviridis, and V. buchanani from the Persian Gulf and Oman Sea, and L. aurata and L. saliens from the Caspian Sea were collected. Samples of an imported, Egyptian species M. capito (this species was mixed with the main imported species as M. cephalusfingerling) were obtained from the Gomishan Research Center in Gorgan. Total DNA from the samples were extracted according to phenol-chloroform method Mithochondrial DNA ,16s RNA was amplified using thermo cyclermachine with universal primers and thensequenced by sending to Takapoozist Company and thereafter to France. Analysis of the sequences showed great differences between Mugil species and the other studied species. The phylogenetic tree obtained through Neighbor-Joining method revealed that L. saliensandL. aurata were in the same branch while L. subviridis was in a separate branch. In contrast, Maximum Parsimony tree located L. subviridis and L. aurata in a single branch and assigned L. saliens to a distinct branch. This result brings in the question of monophyletic origin of the genus Liza.Also.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Mugillidae ; Phylogeny ; Population ; mtDNA ; PCR ; Genetic variation ; Grey mullet ; Mugil cephalus ; Diversity ; M. capito ; Liza subviridis ; L. saliens ; L. aurata
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 118pp.
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  • 7
    Publication Date: 2021-05-19
    Description: This investigation was carried out in order to study of Morphological and genetical difference of various cysts, identification of different ganetical populations and possibility of strains among populations. After assessing the density of cysts at certain interval from different layers of Urmia Lake, isolation of cysts from superficial and depth surfaces with salinity of 170ppt were done. Then, cysts from three stations isolated with sensitive devices. For studying of quality and slightly quantity of cysts, hatching percentage and biometry of cysts were carried out. DNA extraction with using phenol chloroform method from 210 samples of Artemia hatched were done. Population differences of floating cysts of Artemia urmiana were done by analyzing the results of RFLP of Ribosomal RNA (rRNA) gene, which is on mtDNA, was amplified by PCR techniques. In order to enzymatic digestion of PCR products by eleven enzymes Alu I, EcoR I, ECO47 I, Hae III, Hind III, Hinf I, Mbo I, Msp I, Rsa I, Taq I, Tru I were used. Two haplotype (AAAA, ABAA) showed similarity between cysts in those regions. To investigate the results Reap software and X2 test were used. The average of nucleotide diversity and haplotype diversity with in population were 0.006547±0.000003 and 0.5419±0.00292 and nucleotide divergence is estimated to be %0.0228. Based on the results, distribution of haplotypes in different geographical regions of Urmia Lake showed a notable difference and indicating genetical diversity in the Artemia stocks. Finally, investigation in the produced genotypes showed that PCR-RFLP technique with using Hinf I as a molecular marker can be use to separate the Artemia orumiana cysts in Urmia lake.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Morphological ; Genetical ; Variation ; Artemia ; Artemia urmiana ; Identification
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 45pp.
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  • 8
    Publication Date: 2021-05-19
    Description: Black Mouth Croaker (Atrobucca nibe) is of significant value from the economics point of view. In the following study, the genetic diversity of Atrobucca nibe has been investigated using the PCR-sequencing method from three different regions of the Persian gulf and Oman Sea, namely Chabahar in the Sistan and Baluchestan and Jask in Hormozgan Province of Iran and Fujairah in the Fujairah Emirate of the United Arab of Emirates. The purpose of the following exploration has essentially beencoined to further the study of Atrobucca nibe genetic diversity and its population structure in the Persian Gulf and Oman Sea. For this purpose, a number of 54 fish have been collected from the aforementioned regions. The DNA of the fish had been extracted through the Ammonium Acetate method and the quality of the DNAs were analyzed via the spectrophotometry and furthermore the quantity of the extracted DNA were assessed viaelectrophoresis. Polymerase Chain Reaction (PCR) was conducted on the targeted DNAs and thenceforth DNA sequencing was carried out. Subsequently, through sequencing it was discovered that the D-loop region in the mitochondrial DNA (mtDNA) of Black Mouth Croaker,contained 270 base pairs (bp). For the purpose of analyzing the genetic diversity of Atrobucca nibe and its population structure in the Persian Gulf and Oman Sea, the following softwares have been conducted, namely theBioEdit, Arlequin, Dnasp and Mega5 software. Furthermore, the Kimura 2-parameter was used for the purpose of genetic distance analysis. Through observations of average levels of FST between the regions, it can be summed up that genetic differences do exist among the present populations. On the grounds of the obtained results from the Persian Gulf and Oman Sea, it can be concluded that there currently are three different populations of Atrobucca nibe residing in the waters of Sistan & Baluchestan, Hormozgan and Fujairah.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Atrobucca nibe ; Genetic diversity ; PCR - Sequencing ; Population ; Genetic ; Croaker Fish ; Species ; Molecular method ; Black Mouth Croaker ; DNA ; Ammonium Acetate method
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 78pp.
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  • 9
    Publication Date: 2021-05-19
    Description: Without abstract.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Molecular ; Survey ; Marine ; Population
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 142pp.
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  • 10
    Publication Date: 2021-05-19
    Description: Sampling was done using 90 post larvae which were produced by reproduction of some broodstock of Penaeus indicus in one day and reared in the same situation for 4 month. Samples were classified in 3 group high growth, medium and low (according to their weight and length). Genomic DNA was extracted from a 1cm 2 piece of muscle using the phenol-chloroform method. . The polymerase chain reaction (PCR) was done using 21 RAPD loci. And PCR products were separated on 3% Agarose gels. From 21 studied loci, 12 produced polymorphic bands. The most polymorphic band produced using OPAQ 9 and the least by OPAQ 7. According to Nei 1972, the highest distance (0.457) was between low growth group and medium and the lowest (0.091) between high growth group and medium, therefore the highest identity (0.912) was between high growth group and medium and the lowest (0.633) between low growth group and medium. Consensus neighbour-joining tree using Nei (1972 and 1978) resulted in two clades, the first including high and medium growth groups and the second low growth group, it appears that low growth group are depended on separated population of the two others. With considering of mean weight of F1(16.25±1.5), mean weight of 15 ±1.2 and mean weight of parent 31.6, response to selection (R) and heritability for growth in this species were estimated 1.2±0.2 and 0.07±0.01 respectively. In another part of this study Sequencing of specific bands and primer design were done and examining of them on the same age specimens is necessary in following.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Penaeus indicus ; High growth ; RAPD marker ; Genetic ; Shrimp ; Breeding ; Culture ; Sampling ; Broodstock ; Phenol-chloroform methods ; Population ; Species ; Specimens
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 147pp.
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