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  • Photosynthesis
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  • 1
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    Frontiers Media SA
    Publication Date: 2024-04-11
    Description: As the world struggles to reduce its dependence on fossil fuels and curb greenhouse gas emissions, industrial biotechnology is also ‘going green.’ Escherichia coli has long been used as a model Gram-negative bacterium, not only for fundamental research, but also for industrial applications. Recently, however, cyanobacteria have emerged as candidate chassis for the production of commodity fuels and chemicals, utilizing CO2 and sunlight as the main nutrient requirements. In addition to their potential for reducing greenhouse gas emissions and lowering production costs, cyanobacteria have naturally efficient pathways for the production metabolites such as carotenoids, which are of importance in the nutraceutical industry. The unique metabolic and regulatory pathways present in cyanobacteria present new challenges for metabolic engineers and synthetic biologists. Moreover, their requirement for light and the dynamic regulatory mechanisms of the diurnal cycle further complicate the development and application of cyanobacteria for industrial applications. Consequently, significant advancements in cyanobacterial engineering and strain development are necessary for the development of a ‘green E. coli’. This Research Topic will focus on cyanobacteria as organisms of emerging industrial relevance, including research focused on the development of genetic tools for cyanobacteria, the investigation of new cyanobacterial strains, the construction of novel cyanobacterial strains via genetic engineering, the application of ‘omics’ tools to advance the understanding of engineered cyanobacteria, and the development of computational models for cyanobacterial strain development.
    Keywords: TP248.13-248.65 ; TA1-2040 ; green E. coli ; engineered cyanobacteria ; Cell factories ; Green chemicals ; Carbon Capture ; Cyanobacteria ; genetically modified cyanobacteria ; sustainable bioproducts ; Photosynthesis ; Biofuels ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering::TCB Biotechnology
    Language: English
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  • 2
    Publication Date: 2024-04-05
    Description: Chloroplasts are plant cell organelles that convert light energy into relatively stable chemical energy via the photosynthetic process. By doing so, they sustain life on Earth. Chloroplasts also provide diverse metabolic activities for plant cells, including the synthesis of fatty acids, membrane lipids, isoprenoids, tetrapyrroles, starch, and hormones. The biogenesis, morphogenesis, protection and senescence of chloroplasts are essential for maintaining a proper structure and function of chloroplasts, which will be the theme of this Research Topic. Chloroplasts are enclosed by an envelope of two membranes which encompass a third complex membrane system, the thylakoids, including grana and lamellae. In addition, starch grains, plastoglobules, stromules, eyespots, pyrenoids, etc. are also important structures of chloroplasts. It is widely accepted that chloroplasts evolved from a free-living photosynthetic cyanobacterium, which was engulfed by a eukaryotic cell. Chloroplasts retain a minimal genome, most of the chloroplast proteins are encoded by nuclear genes and the gene products are transported into the chloroplast through complex import machinery. The coordination of nuclear and plastid genome expressions establishes the framework of both anterograde and retrograde signaling pathways. As the leaf develops from the shoot apical meristem, proplastids and etioplastids differentiate into chloroplasts. Chloroplasts are divided by a huge protein complex, also called the plastid-dividing (PD) machinery, and their division is also regulated by many factors to get an optimized number and size of chloroplasts in the cell. These processes are fundamental for the biogenesis and three-dimensional dynamic structure of chloroplasts. During the photosynthesis, reactive oxygen species (ROS) and other cellular signals can be made. As an important metabolic hub of the plant cell, the chloroplast health has been found critical for a variety of abiotic and biotic stresses, including drought, high light, cold, heat, oxidative stresses, phosphate deprivation, and programmed cell death at sites of infection. Therefore, a better understanding the responses of chloroplasts to these stresses is part of knowing how the plant itself responds. Ultimately, this knowledge will be necessary to engineer crops more resistant to common stresses. With the current global environment changes, world population growth, and the pivotal role of chloroplasts in carbon metabolism, it is of great significance to represent the advancement in this field, for science and society. Tremendous progresses have been made in the field of chloroplast biology in recent years. Through concerted efforts from the community, greater discoveries definitely will emerge in the future.
    Keywords: QK1-989 ; Q1-390 ; envelope ; development ; chloroplast ; thylakoid ; Photosynthesis ; Lipid ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences
    Language: English
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  • 3
    Publication Date: 2024-04-05
    Description: Microbial mat communities consist of dense populations of microorganisms embedded in exopolymers and/or biomineralized solid phases, and are often found in mm-cm thick assemblages, which can be stratified due to environmental gradients such as light, oxygen or sulfide. Microbial mat communities are commonly observed under extreme environmental conditions, deriving energy primarily from light and/or reduced chemicals to drive autotrophic fixation of carbon dioxide. Microbial mat ecosystems are regarded as living analogues of primordial systems on Earth, and they often form perennial structures with conspicuous stratifications of microbial populations that can be studied in situ under stable conditions for many years. Consequently, microbial mat communities are ideal natural laboratories and represent excellent model systems for studying microbial community structure and function, microbial dynamics and interactions, and discovery of new microorganisms with novel metabolic pathways potentially useful in future industrial and/or medical applications. Due to their relative simplicity and organization, microbial mat communities are often excellent testing grounds for new technologies in microbiology including micro-sensor analysis, stable isotope methodology and modern genomics. Integrative studies of microbial mat communities that combine modern biogeochemical and molecular biological methods with traditional microbiology, macro-ecological approaches, and community network modeling will provide new and detailed insights regarding the systems biology of microbial mats and the complex interplay among individual populations and their physicochemical environment. These processes ultimately control the biogeochemical cycling of energy and/or nutrients in microbial systems. Similarities in microbial community function across different types of communities from highly disparate environments may provide a deeper basis for understanding microbial community dynamics and the ecological role of specific microbial populations. Approaches and concepts developed in highly-constrained, relatively stable natural communities may also provide insights useful for studying and understanding more complex microbial communities.
    Keywords: QR1-502 ; Q1-390 ; Metagenomics ; Metabolomics ; chemotrophy ; extremophiles ; microbial mats ; Proteomics ; microsensors ; Diel cycling ; Photosynthesis ; Systems Biology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Language: English
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  • 4
    Publication Date: 2024-03-31
    Description: Jules Verne (1828-1905), author of Around the World in Eighty Days (1873) and Journey to the Center of the Earth (1864), wrote in 1875: "I believe that water will one day be used as a fuel, because the hydrogen and oxygen which constitute it, used separately or together, will furnish an inexhaustible source of heat and light. I therefore believe that, when coal (oil) deposits are oxidised, we will heat ourselves by means of water. Water is the fuel of the future". Solar energy is the only renewable energy source that has sufficient capacity for the global energy need; it is the only one that can address the issues of energy crisis and global climate change. A vast amount of solar energy is harvested and stored via photosynthesis in plants, algae, and cyanobacteria since over 3 billion years. Today, it is estimated that photosynthesis produces more than 100 billion tons of dry biomass annually, which would be equivalent to a hundred times the weight of the total human population on our planet at the present time, and equal to a global energy storage rate of about 100 TW. The solar power is the most abundant source of renewable energy, and oxygenic photosynthesis uses this energy to power the planet using the amazing reaction of water splitting. During water splitting, driven ultimately by sunlight, oxygen is released into the atmosphere, and this, along with food production by photosynthesis, supports life on our earth. The other product of water oxidation is “hydrogen” (proton and electron). This ‘hydrogen’ is not normally released into the atmosphere as hydrogen gas but combined with carbon dioxide to make high energy containing organic molecules. When we burn fuels we combine these organic molecules with oxygen. The design of new solar energy systems must adhere to the same principle as that of natural photosynthesis. For us to manipulate it to our benefit, it is imperative that we completely understand the basic processes of natural photosynthesis, and chemical conversion, such as light harvesting, excitation energy transfer, electron transfer, ion transport, and carbon fixation. Equally important, we must exploit application of this knowledge to the development of fully synthetic and/or hybrid devices. Understanding of photosynthetic reactions is not only a satisfying intellectual pursuit, but it is important for improving agricultural yields and for developing new solar technologies. Today, we have considerable knowledge of the working of photosynthesis and its photosystems, including the water oxidation reaction. Recent advances towards the understanding of the structure and the mechanism of the natural photosynthetic systems are being made at the molecular level. To mimic natural photosynthesis, inorganic chemists, organic chemists, electrochemists, material scientists, biochemists, biophysicists, and plant biologists must work together and only then significant progress in harnessing energy via “artificial photosynthesis” will be possible. This Research Topic provides recent advances of our understanding of photosynthesis, gives to our readers recent information on photosynthesis research, and summarizes the characteristics of the natural system from the standpoint of what we could learn from it to produce an efficient artificial system, i.e., from the natural to the artificial. This topic is intended to include exciting breakthroughs, possible limitations, and open questions in the frontiers in photosynthesis research.
    Keywords: QP1-981 ; QK1-989 ; Q1-390 ; chlorophyll f ; kinase ; water oxidation ; thylakoid membrane ; FTIR ; Mass Spectrometry ; reaction center ; photoinhibition ; Photosynthesis ; photoaclimation ; thema EDItEUR::M Medicine and Nursing::MF Pre-clinical medicine: basic sciences::MFG Physiology
    Language: English
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  • 5
    Publication Date: 2021-05-19
    Description: Taking into account the high potential of cyanobacteria to tolerate salinity stress, researches have evaluated the morphological and physiological behavior of these microorganisms in recent years. This study is conducted to investigate the impact of different concentrations of NaCl on the morphological and physiological traits of Nostoc sp. ISC 101. Biometrical and morphological observations are carried out by light and scanning electron microscopy. Results indicated that vegetative cells and heterocysts were wider in control treatment in comparison with samples under different amounts of salinity. Akinete formation began in 3% NaCl and reached to highest level in 5%. The relative degeneration of structure of the cells in 5% salt was demonstrated. According to physiological impresses of salt it was found that growth rate decreased with increasing salinity. Total chlorophyll content stimulated in 1% salinity, but in the higher concentration it decreased vice versa. The rate of APC, PE, PC increased in 1% salinity, although in high level concentration they would be diminished. Photosynthesis rate was also decreased with increasing salinity but it was stimulated slightly in 1% NaCl. All in consequence, despite of acclimation of this strain to marine environment, not much tolerance was seen in the mentioned treatments, and increasing salinity to upper than 1% NaCl had destructive effects, and cyanobacterium maintained its growth rate at slightly saline environments.
    Description: Published
    Keywords: Biology ; Physiology ; Growth ; Morphology ; Nostoc ; Photosynthesis ; Salinity ; SEM ; 16S rRNA ; Morphological ; Physiological
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed
    Format: pp.907-917
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  • 6
    Publication Date: 2021-07-06
    Description: By the industrial cultivation of blue-green algae, there very much appears the important question about their carbon nutrition. Spirulina grows within the range of pH value of medium of 8.5 - 11.0. In this range of pH value in the culture medium CO2 is present in the form of bicarbonate and carbonate, which serves as principal source of carbon for the present type of algae. There is little information yet about the influence of the pH of the medium, and the form of carbon components of the medium, on the rate-increase of Spirulina. Investigations were conducted into the influence of some pH values of medium on the rate-increase of the alga Spirulina platensis.
    Description: Translated from German into English
    Keywords: Biology ; Limnology ; Algae ; Carbon ; pH effects ; Algal culture ; Photosynthesis
    Repository Name: AquaDocs
    Type: monograph
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  • 7
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4915 | 1256 | 2011-09-29 15:45:27 | 4915 | Freshwater Biological Association
    Publication Date: 2021-07-07
    Description: The purpose of this work was the study of phytoplankton production of the salt lakes of the Steppe region of Crimea, during the vegetative period of 1974. From May to October Sakskoe and Sasyk Lakes were examined, and from August to October - Moinakskoe Lake. The density of the salt water was measured and the intensity of photosynthesis was determined. From the data presented, it is apparent that the intensity of photosynthesis in Sakskoe and Sasyk Lakes, on average, is extremely high.
    Description: Translated from Russian into English
    Keywords: Biology ; Ecology ; Limnology ; Salt lakes ; Phytoplankton ; Primary production ; Saline water ; Photosynthesis
    Repository Name: AquaDocs
    Type: monograph
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  • 8
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5301 | 1256 | 2011-09-29 15:07:11 | 5301 | Freshwater Biological Association
    Publication Date: 2021-07-09
    Description: The cyanobacteria that cause problems in water supply are principally the colonial forms that are buoyed up by gas vesicles. The success of these organisms is due, in part, to their gas vesicles, which enable them to perform vertical migrations or to maintain themselves in the euphotic zone. The gas vesicles are also the root cause of the problems. In calm periods they cause the cyanobacteria to float to the water surface forming noxious scums, and they may prevent the colonies from sedimenting in water treatment plants. Gas vesicles are hollow, gas-filled structures; they are rigid but can be collapsed by the application of pressure. Their critical collapse pressure is influenced by their dimensions, which vary in different organisms. Gas vesicles are formed by the assembly of two types of protein, which determine their mechanical and physical properties. Methods for collapsing gas vesicles in natural populations of cyanobacteria will be considered. They may have application to the control of cyanobacteria in water supply.
    Keywords: Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Gases ; Buoyancy ; Algae ; Bacteria ; Photosynthesis ; Growth ; Competition
    Repository Name: AquaDocs
    Type: book_section , FALSE
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  • 9
    Publication Date: 2021-05-19
    Description: The increments in the ultraviolet radiation B (RUVB, 280-320 nm) resultants of the destruction of the ozone layer affect diverse echo-physiologic aspects of the marine phytoplankton. On this study were compared the responses of phytoplankton from an ambient Sub-Antarctic (Channel Beagle, 54º 52´S, 68º 18´W) and another Antarctic (Potter Cove, 62º 14´S, 58º 38´W) to the ultraviolet radiation (RUV). The decrease of the photosynthesis on short term (hours) was observed in both places, however inhibition thresholds were present. In the Beagle Channel, these were for RUVB and ultraviolet radiation A (RUVA, 320-400 nm), respectively, 0,2 and 6,2 Wm-2 for communities with more than 70% diatoms and 0,45 and 14,2 Wm-2, respectively, for communities with more than 70% phytoflagellates. MAA´s were synthesized by the diatoms in response to RUV. These compounds were absent in phytoflagellates. A smaller inhibition of the photosynthesis was observed with bigger concentrations of MAA´s. When the relative abundance of diatomeas was higher, it was determined that those smaller l from the RUVB were more effective in inhibiting the photosynthesis for energy unit. For the Antarctic communities (〉 70% phytoflagellates) only was studied normal ozone conditions and it was not photosynthesis inhibition when the doses of RUVB and RUVA were lesser than 0.6 and 13 Wm-2, respectively. In the Channel Beagle there was significant differences when analyzing the photosynthesis inhibition during normal and reduced ozone conditions, being higher in this last. The results of the investigations clearly show a higher sensibility in the communities of ambient Sub-Antarctic regarding the RUVB compared with the Antarctic. The phytoplankton communities from both ambients they use different strategies to adapt to the exposure to RUVB and RUVA The long term effects of exposure in both ambients varied depending on the taxonomic initial composition of the community and the previous light history of the cells. However, a tendency existed to a change in the structure of the community like a decrease in the relative abundance of the phytoflagellates. Asteromonas sp. (phytoflagellate) it showed an important inhibition in their growth rate at the beginning of the exponential phase (180%), while inhibition was not observed in the diatom (Navicula sp.). The content of TBARS (oxidative stress index) in phytoflagellates cultures, exposed to RUVB and RUVA in Sub-Antarctic waters, presented a significant decrease the third day growth in coincidence with an increment in the content of a-tocopherol and ß-carotene. The maximum concentrations of a-tocoferol were 150 and 30 pmol 104 cell-1 for a phytoflagellate and a diatom (Thalassiosira sp.) respectively, coming from Antártida. This is approximately the 30 and 7% of the concentrations determined in the Channel Beagle, suggesting that the answers to the RUV are more marked in the phytoflagellates coming from Sub-Antarctic waters. On the other hand, inhibition was not determined in the growth of communities in the Antarctic. This could be explained like a better adaptation to the exposure to the RUV as for the content of antioxidants and MAA´s in antarctic diatoms. If it is compared with the initial time, the Sub-antarctic communities showed a content of MAA´s of 2% in comparison to the value found in Antártic, where maximum rates of accumulation of Shinorina and 334-Porphyrawere determined under the treatment UVB were 1,05 - 1,45 day-1, respectively in short term experiments. In spite of the initial reduction in the growth rate and in the so much accumulation of biomass of the communities like in the unialgal cultures, the final biomass was not different among the three treatments. This implies that the RUVB only slowed the process of accumulation, and the population was able to adapt efficiently to this radiation after several days exposure. With regard to the photosynthesis inhibition by the RUV, in different times along long term experiments, so much in ambient Antarctic as Sub-Antarctic was observed that after several days of exposure, this is annulled. In relation to the vertical mixture the results showed that for both ambients the percentage of photosynthesis reduction was significantly smaller in this condition when being compared with fixed incubations in surface. Also, the mixture showed to be more effective in providing fotoprotección to the exposure treatments to RUVB that to the other treatments, being this stronger effect under conditions of reduced ozone.
    Description: Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales
    Description: Tesis (doctorado)
    Description: fitoplancton, radiación ultravioleta, mezcla vertical, fotosíntesis, crecimiento, taxonomía, RUV, RUVB, RUVA, MAA´s
    Keywords: Phytoplankton ; Taxonomy ; Photosynthesis ; Ultraviolet radiation ; Phytoplankton ; Photosynthesis ; Ultraviolet radiation ; Vertical mixing ; Taxonomy
    Repository Name: AquaDocs
    Type: Theses and Dissertations
    Format: 294
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  • 10
    Publication Date: 2021-05-19
    Description: Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales (Argentina)
    Description: Tesis (doctorado)
    Description: clorofila, plataforma continental, frentes de plataforma, frente de estuarios, frentes de borde de plataforma, variabilidad, fitoplancton, fotosíntesis, imágenes satelitales
    Keywords: Phytoplankton ; Chlorophylls ; Continental shelves ; Photosynthesis ; Chlorophylls ; Continental shelves ; Shelf fronts ; Estuarine front ; Shelf edge fronts ; Variability ; Phytoplankton ; Photosynthesis ; Satellite sensing
    Repository Name: AquaDocs
    Type: Theses and Dissertations
    Format: 210
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  • 11
    Publication Date: 2021-05-19
    Description: Chaetoceros radicans was selected to test the effect of copper concentrations of 0.001, 0.005, 0.01, 0.05, 0.1 and 0.5 ppm for 6 days on the photosynthetic activity and chlorophyll-a content under laboratory conditions. The photosynthetic activity decreased with time of exposure and copper concentration. The control photosynthetic activity reached a maximum value at 120 hours and chlorophyll-a at 72 hours. Chaetoceros radicans cultures treated by copper showed a slight decrease in its photosynthetic activity and chlorophyll-a at levels 0.001 and 0.005 ppm, while they rapidly decreased at higher copper concentrations.
    Description: High Institute of Public Health, Alexandria University
    Description: Published
    Keywords: Chloroyhyll-a ; Copper ; Chlorophylls ; Chlorophylls ; Copper ; Photosynthesis
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
    Format: 132422 bytes
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  • 12
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    In:  http://aquaticcommons.org/id/eprint/9378 | 115 | 2012-10-23 09:05:21 | 9378 | WorldFish Center
    Publication Date: 2021-07-05
    Description: In the present study, a Border Planting (BP) pattern recommended by the Bangladesh Agricultural Research Council was tested against Regular Planting (RP) to assess the effect, if any, on gross phytoplankton photosynthesis and shading. A Wide Planting (WP) pattern was also included in the trial, as an extreme case, to assess the level of photosynthesis that might be obtained if some of the rice yield was sacrificed. Three rice-planting treatments, each with four replicates, using the rice variety BR16, were undertaken: (1) RP, 26 cm between rows N to S and E to W; (2) BP, 20 cm between rows N to S and alternately 21 cm and 36 cm between rows E, to W; and (3) WP, 66 cm between rows N to S and E to W. BP showed no advantage compared to RP, possibly because the rice variety used was short and thus produced relatively little shading. WP did show a benefit for phytoplankton photosynthesis, but this may not generate an increase in fish yield sufficient to justify the negative impact of rice production.
    Keywords: Aquaculture ; Planting ; Rice culture ; Phytoplankton ; Photosynthesis ; Shading ; Rice field aquaculture ; Integrated farming ; Bangladesh
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
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    Format: 23-26
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  • 13
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2007. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Comptes Rendus Geosciences 339 (2007): 784-798, doi:10.1016/j.crte.2007.08.008.
    Description: In this review article, we explore how surface-level ozone affects trees and crops with special emphasis on consequences for productivity and carbon sequestration. Vegetation exposure to ozone reduces photosynthesis, growth, and other plant functions. Ozone formation in the atmosphere is a product of NOx that are also a source of nitrogen deposition. Reduced carbon sequestration of temperate forests resulting from ozone is likely offset by increased carbon sequestration from nitrogen fertilization. However, since fertilized croplands are generally not nitrogen-limited, capping ozone-polluting substances in the U.S., Europe, and China can reduce future crop yield loss substantially.
    Description: This study was funded by the Biocomplexity Program of the U.S. National Science Foundation (ATM-0120468), the Methods and Models for Integrated Assessment Program of the U.S. National Science Foundation (DEB-9711626) and the Earth Observing System Program of the U.S. National Aeronautics and Space Administration (NAG5-10135).
    Keywords: Ozone ; Nitrogen deposition ; Vegetation ; Photosynthesis ; Stomatal conductance ; Crop yield ; Carbon storage
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 14
    Publication Date: 2022-05-25
    Description: Author Posting. © The Company of Biologists, 2018. This article is posted here by permission of The Company of Biologists for personal use, not for redistribution. The definitive version was published in Journal of Cell Science 131 (2018): jcs212233, doi:10.1242/jcs.212233.
    Description: Microscopic green algae inhabiting desert microbiotic crusts are remarkably diverse phylogenetically, and many desert lineages have independently evolved from aquatic ancestors. Here we worked with five desert and aquatic species within the family Scenedesmaceae to examine mechanisms that underlie desiccation tolerance and release of unicellular versus multicellular progeny. Live cell staining and time-lapse confocal imaging coupled with transmission electron microscopy established that the desert and aquatic species all divide by multiple (rather than binary) fission, although progeny were unicellular in three species and multicellular (joined in a sheet-like coenobium) in two. During division, Golgi complexes were localized near nuclei, and all species exhibited dynamic rotation of the daughter cell mass within the mother cell wall at cytokinesis. Differential desiccation tolerance across the five species, assessed from photosynthetic efficiency during desiccation/rehydration cycles, was accompanied by differential accumulation of intracellular reactive oxygen species (ROS) detected using a dye sensitive to intracellular ROS. Further comparative investigation will aim to understand the genetic, ultrastructural and physiological characteristics supporting unicellular versus multicellular coenobial morphology, and the ability of representatives in the Scenedesmaceae to colonize ecologically diverse, even extreme, habitats.
    Description: This work was supported by the National Science Foundation, Division of Integrative Organismal Systems [1355085 to Z.G.C.], an anonymous donor [to Z.G.C.], the Marine Biological Laboratory [to M.B.] and the Environmental and Molecular Sciences Laboratory (EMSL) [48938 to Z.G.C.], a Department of Energy, Office of Science User Facility sponsored by the Office of Biological and Environmental Research, located at Pacific Northwest National Laboratory.
    Description: 2019-04-10
    Keywords: ROS ; Photosynthesis ; Multiple fission ; Scenedesmus ; Enallax ; Tetradesmus
    Repository Name: Woods Hole Open Access Server
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  • 15
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 123 (2018): 1796-1816, doi:10.1029/2017JG004263.
    Description: Gross photosynthetic activity by phytoplankton is directed to linear and alternative electron pathways that generate ATP, reductant, and fix carbon. Ultimately less than half is directed to net growth. Here we present a phytoplankton cell allocation model that explicitly represents a number of cell metabolic processes and functional pools with the goal of evaluating ATP and reductant demands as a function of light, nitrate, iron, oxygen, and temperature for diazotrophic versus nondiazotrophic growth. We employ model analogues of Synechoccocus and Crocosphaera watsonii, to explore the trade‐offs of diazotrophy over a range of environmental conditions. Model analogues are identical in construction, except for an iron quota associated with nitrogenase, an additional respiratory demand to remove oxygen in order to protect nitrogenase and an additional ATP demand to split dinitrogen. We find that these changes explain observed differences in growth rate and iron limitation between diazotrophs and nondiazotrophs. Oxygen removal imparted a significantly larger metabolic cost to diazotrophs than ATP demand for fixing nitrogen. Results suggest that diazotrophs devote a much smaller fraction of gross photosynthetic energy to growth than nondiazotrophs. The phytoplankton cell allocation model model provides a predictive framework for how photosynthate allocation varies with environmental conditions in order to balance cellular demands for ATP and reductant across phytoplankton functional groups.
    Description: DOC | NOAA | Climate Program Office (CPO) Grant Number: NA100AR4310093; National Science Foundation (NSF) Grant Number: EF‐0424599; Center for Microbial Oceanography Research and Education (CMORE) Grant Number: NSF EF‐0424599; NOAA Global Carbon Program Grant Number: NA100AR4310093
    Description: 2018-11-01
    Keywords: Phytoplankton ; Diazotroph ; Photosynthesis ; Resource allocation ; Biogeochemistry
    Repository Name: Woods Hole Open Access Server
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  • 16
    Publication Date: 2022-05-25
    Description: Author Posting. © Elsevier B.V., 2009. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 56 (2009): 1242-1250, doi:10.1016/j.dsr.2009.03.001.
    Description: An analysis of nine years of data from the NW subtropical Atlantic reveals that variability in heterotrophic processes associated with (sub)mesoscale features has a major impact on the balance between photosynthesis and respiration. Higher indirect estimates of net community production (NCPe) are associated with the center of Mode Water Eddies (MWE) and frontal regions between cyclonic and anticyclonic eddies (CA). The increase in NCPe observed at the center of MWE is driven mainly by an increase in autotrophic production, whereas in CA enhanced NCPe rates are the result of an important reduction in bacterial respiration. Both features also exhibit a decrease in nitrate concentration, consistent with nutrient consumption, and relative increases in oxygen anomaly and particulate and dissolved organic carbon in the upper 200 m. Plankton community composition in CA and MWE is characterized by the reduction in bacterial biomass, and the dominance of Prochlorococcus and Synechococcus in CA, and diatoms and dinoflagellates in MWE. Contrary to a common assumption, these results show for the first time that in ecosystems influenced by (sub)mesoscale dynamics, respiration can be as variable as photosynthesis.
    Description: Support by a Fulbright postdoctoral fellowship and the Juan de la Cierva program from the Spanish Ministry of Science and Education. Support of this activity by the U.S. National Science Foundation and the National Aeronautics and Space Administration is greatly appreciated.
    Keywords: (Sub)mesoscale ; Photosynthesis ; Respiration ; Net community production ; Sargasso Sea
    Repository Name: Woods Hole Open Access Server
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  • 17
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2009
    Description: Iron availability and primary productivity in the oceans are intricately linked through photosynthesis. At the global scale we understand how iron addition induces phytoplankton blooms through meso-scale iron-addition experiments. At the atomic scale, we can describe the length and type of bonds that connect iron atoms to components of photosystem I, the most efficient light-harvesting complex in nature. Yet, we know little of how iron influences microbial diversity and distribution in the open ocean. In this study, we assess the influence of iron on the ecology of the numerically abundant marine cyanobacterium, Prochlorococcus. With its minimal genome and ubiquity in the global ocean, Prochlorococcus represents a model system in which to study the dynamics of the link between iron and primary productivity. To this end, we tested the iron physiology of two closely-related Prochlorococcus ecotypes. MED4 is adapted to high-light environments while MIT9313 lives best in low-light conditions. We determined that MIT9313 is capable of surviving at low iron concentrations that completely inhibit MED4. Furthermore, concentrations of Fe’ that inhibit growth in culture are sufficient to support Prochlorococcus growth in the field, which raises questions about the species of iron available to Prochlorococcus. We then examined the molecular basis for the ability of MIT9313 to grow at lower iron concentrations than MED4 by assessing whole-genome transcription in response to changes in iron availability in the two ecotypes. Genes that were differentially expressed fell into two categories: those that are shared by all (Prochlorococcus core genome) and those that are not (non-core genome). Only three genes shared between MED4 and MIT9313 were iron-responsive in both strains. We then tested the iron physiology of picocyanobacteria in the field and found that Synechococcus is iron-stressed in samples where Prochlorococcus is not. Finally, we propose a method to measure how iron stress in Prochlorococcus changes over natural gradients of iron in the oligotrophic ocean by quantifying transcription of the iron-stress induced gene, isiB. Taken together, our studies demonstrate that iron metabolism influences the ecology of Prochlorococcus both by contributing to its diversity and distinguishing it from other marine cyanobacteria.
    Description: This work was supported by grants from the Gordon and Betty Moore Foundation (#495 and #495.01), the National Science Foundation (OCE-0425602), the Center for Microbial Oceanography: Research and Education established by the National Science Foundation (Z792093-02), and the Department of Energy (DE-FG02-07ER64506 and DE-FG02-08ER64516) to Sallie W. Chisholm. In addition, the work was supported by grants to Mak A. Saito from the Office of Naval Research (N00014-05-1-0704), National Science Foundation Center for Microbial Oceanography: Research and Education (Z792384), National Science Foundation Environmental Genomics Program (0723667), and National Science Foundation Chemical Oceanography Program (OCE-0752271 and OCE-0452883).
    Keywords: Photosynthesis ; Iron ; Metabolism ; Knorr (Ship : 1970-) Cruise KN182-5 ; Knorr (Ship : 1970-) Cruise KN182-9
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  • 18
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 112 (2015): 9944-9949, doi:10.1073/pnas.1509448112.
    Description: Marine Synechococcus are some of the most diverse and ubiquitous phytoplankton, and iron (Fe) is an essential micronutrient that limits productivity in many parts of the ocean. To investigate how coastal and oceanic Atlantic Synechococcus strains acclimate to Fe availability, we compared the growth, photophysiology, and quantitative proteomics of two Synechococcus strains from different Fe regimes. Synechococcus strain WH8102, from a region in the southern Sargasso Sea that receives substantial dust deposition, showed impaired growth and photophysiology as Fe declined, yet utilized few acclimation responses. Coastal WH8020, from the dynamic, seasonally variable New England shelf, displayed a multi-tiered, hierarchical cascade of acclimation responses with different Fe thresholds. The multi-tiered response included changes in Fe acquisition, storage, and photosynthetic proteins, substitution of flavodoxin for ferredoxin, and modified photophysiology, all while maintaining remarkably stable growth rates over a range of Fe concentrations. Modulation of two distinct ferric uptake regulator (Fur) proteins that coincided with the multi-tiered proteome response was found, implying the coastal strain has different regulatory threshold responses to low Fe availability. Low nitrogen (N) and phosphorus (P) availability in the open ocean may favor the loss of Fe response genes when Fe availability is consistent over time, whereas these genes are retained in dynamic environments where Fe availability fluctuates and N and P are more abundant.
    Description: This work was supported by a National Science Foundation Postdoctoral Research Fellowship in Biology to K.R.M.M. (NSF 1103575), National Science Foundation Oceanography grants OCE-1220484, OCE-0928414, OCE-1233261, OCE- 1155566, OCE-1131387, and OCE-0926092, as well as Gordon and Betty Moore Foundation grants 3782 and 3934.
    Keywords: Iron adaptation ; Synechococcus ; Photosynthesis ; Quantitative proteomics
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  • 19
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2016. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Global Change Biology 23 (2017): 2874-2886, doi: 10.1111/gcb.13590.
    Description: Accurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales, and explored how leaf-level ChlF was linked with canopy-scale solar induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts, USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R2=0.73, 0.77 and 0.86 at leaf, canopy and satellite scales, respectively; p〈0.0001). We developed a model to estimate GPP from the tower-based measurement of SIF and leaf-level ChlF parameters. The estimation of GPP from this model agreed well with flux tower observations of GPP (R2=0.68; p〈0.0001), demonstrating the potential of SIF for modeling GPP. At the leaf scale, we found that leaf Fq’/Fm’, the fraction of absorbed photons that are used for photochemistry for a light adapted measurement from a pulse amplitude modulation fluorometer, was the best leaf fluorescence parameter to correlate with canopy-SIF yield (SIF/APAR, R2=0.79; p〈0.0001). We also found that canopy-SIF and SIF-derived GPP (GPPSIF) were strongly correlated to leaf-level biochemistry and canopy structure, including chlorophyll content (R2=0.65 for canopy-GPPSIF and chlorophyll content; p〈0.0001), leaf area index (LAI) (R2=0.35 for canopy-GPPSIF and LAI; p〈0.0001), and normalized difference vegetation index (NDVI) (R2=0.36 for canopy-GPPSIF and NDVI; p〈0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales.
    Description: This research was supported by U.S. Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI-959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to J. Tang, National Science Foundation of China Grants (41671421) to Y. Zhang, and China Scholarship Council (CSC) to H. Yang.
    Description: 2017-12-14
    Keywords: Solar induced fluorescence ; Photosynthesis ; Gross primary production ; Chlorophyll ; Vegetation indices ; Carbon cycle
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  • 20
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 745–761, doi:10.1002/2016JC012326.
    Description: Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ∼8.5, significantly elevated above that of the surrounding open ocean (∼8.0–8.1) as a consequence of daytime NEP (up to 112 mmol C m−2 h−1). Diurnal-averaged NEC was 390 ± 90 mmol CaCO3 m−2 d−1, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m−2 h−1. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.
    Description: NSF Grant Number: 1220529
    Description: 2017-07-31
    Keywords: Coral reef ; Ocean acidification ; Calcification ; Photosynthesis ; Coral bleaching
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  • 21
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution August 1979
    Description: Colonial radiolarians (Spumellaria) are among the most common and abundant large zooplankton, but they have been little studied by modern biologists. Colonies were found on 98% of epipelagic diving stations in the period from 1977 to 1979. Measured abundances ranged from .04 to 540 colonies per m3. Colony morphology of common genera and species is described and three new shell-less species which reach a length in excess of 1 m are discussed in detail. Some simple behavioral responses are documented, including control of colony buoyancy and position of algae in the colonies. Radiolarians feed on a wide variety of planktonic organisms including tintinnids, copepods, appendicularians, mollusc larvae and hydromedusae. They are hosts to parasitic hyperiid amphipods, particularly those of the genus Hyperietta. Radiolarians are prey of the amphipod Oxycephaius ciausi, an unidentified turbellarian and possibly the Harpacticoid copepods Miracia efferata and Sapphirina sp. Colonial radiolarians are also hosts to symbiotic dinoflagellates. Experiments were done at sea on the net incorporation of CO2 by these algae using 14C labelled NaHC03. Data from these experiments were related to content of carbon and chlorophyll as a function of colony size (cell number). Carbon content of colonies related well with colony size. Mean values were 50, 85, 100 and 200 ng C per radiolarian cell for coiiozoum inerme, C. iongiforme, Acrosphaera spinosa and coiiozoum radiosum respectively. Chlorophyll content varied widely between colonies and chlorophyll per radiolarian cell decreased with increasing colony size in Acrosphaera spinosa. Net carbon incorporation increased with colony size at given light intensities as did phutosynthetic assimilation (mmoles CO2.mg Chl a -l.hr -1) in A. spinosa. In experiments on the effect of light intensity on photosynthesis, there was no evidence for photoinhibition at high intensities in Acrosphaera spinosa. Replicate pieces of the large colonies of C. longiforme were incubated together, each colony at a different light intensity. Representative pieces were measured and used for chlorophyll carbon and nitrogen analysis and counted for abundance of radiolarian and algal cells and tintinnid prey. Incorporation per unit length varied little within colonies Photosynthetic assimilation followed no predictable pattern as a function of light intensity. However, it related directly to abundance of tintinnid prey remains. This effect apparently overrides that of light intensity. Total photosynthesis incorporation was only 0.1 to 0.8% of the total colony carbon per hour. The contribution of colonial radiolarians to total productivity of the regions studied was insignificant. However, the radiolarians' productivity is available to a unique portion of the planktonic food web. Because of their size and abundance radiolarians are important as substrates in their environment.
    Description: This research was supported in part by the Woods Hole Oceanographic Institution Education Program and the National Science Foundation, Oceanographic Section, Grant Nos. OCE75-2l7l5 and OCE77-225ll.
    Keywords: Radiolaria ; Marine zooplankton ; Marine ecology ; Photosynthesis ; Chain (Ship : 1958-) Cruise CH122 ; Chain (Ship : 1958-) Cruise CH123 ; Chain (Ship : 1958-) Cruise CH125 ; Knorr (Ship : 1970-) Cruise KN53 ; Columbus Iselin (Ship) Cruise CI76-2 ; Oceanus (Ship : 1975-) Cruise OC11 ; Knorr (Ship : 1970-) Cruise KN58 ; Oceanus (Ship : 1975-) Cruise OC22 ; Oceanus (Ship : 1975-) Cruise OC30 ; Oceanus (Ship : 1975-) Cruise OC33 ; Thomas Washington (Ship) Cruise ; Atlantis II (Ship : 1963-) Cruise AII98 ; Atlantis II (Ship : 1963-) Cruise AII101 ; Oceanus (Ship : 1975-) Cruise OC52 ; Anton Dohr (Ship) Cruise
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  • 22
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2010. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 20 (2010): 1569–1582, doi:10.1890/09-0693.1.
    Description: We seek to understand how biophysical factors such as soil temperature (Ts), soil moisture (θ), and gross primary production (GPP) influence CO2 fluxes across terrestrial ecosystems. Recent advancements in automated measurements and remote-sensing approaches have provided time series in which lags and relationships among variables can be explored. The purpose of this study is to present new applications of continuous measurements of soil CO2 efflux (F0) and soil CO2 concentrations measurements. Here we explore how variation in Ts, θ, and GPP (derived from NASA's moderate-resolution imaging spectroradiometer [MODIS]) influence F0 and soil CO2 production (Ps). We focused on seasonal variation and used continuous measurements at a daily timescale across four vegetation types at 13 study sites to quantify: (1) differences in seasonal lags between soil CO2 fluxes and Ts, θ, and GPP and (2) interactions and relationships between CO2 fluxes with Ts, θ, and GPP. Mean annual Ts did not explain annual F0 and Ps among vegetation types, but GPP explained 73% and 30% of the variation, respectively. We found evidence that lags between soil CO2 fluxes and Ts or GPP provide insights into the role of plant phenology and information relevant about possible timing of controls of autotrophic and heterotrophic processes. The influences of biophysical factors that regulate daily F0 and Ps are different among vegetation types, but GPP is a dominant variable for explaining soil CO2 fluxes. The emergence of long-term automated soil CO2 flux measurement networks provides a unique opportunity for extended investigations into F0 and Ps processes in the near future.
    Description: Data collection was possible thanks to NASA, the NSF Center for Embedded Networked Sensing (CCR-0120778), DOE (DE-FG02-03ER63638), CONACyT, UCMEXUS, NSF (EF-0410408), NSF-LTER, KAKENHI (12878089 and 13480150), the Academy of Finland (213093), the Austrian Science Fund (FWF, P18756-B16), the Kearney Foundation, the Canadian Foundation for Climate and Atmospheric Sciences (CFCAS), and the Natural Science and Engineering Research Council of Canada (NSERC). R. Vargas was supported by grant DEB-0639235 during the preparation of this manuscript.
    Keywords: Lags ; Moderate-resolution imaging spectroradiometer (MODIS) ; Photosynthesis ; Soil CO2 efflux ; Soil CO2 production ; Soil CO2 sensors ; Soil respiration
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  • 23
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 1995
    Description: Fluctuations in light intensity due to vertical mixing in the open ocean surface layer will affect phytoplankton physiology. Conversely, indicators of phytoplankton photoacclimation will be diagnostic of mixing processes if the appropriate kinetics are known. A combination of laboratory and field experimental work, field observations, and theoretical models were used to quantify the relationship between vertical mixing and photoacclimation in determining the time and space evolution of single cell optical properties for the photosynthetic picoplankton, Prochlorococcus spp. Diel time-series observations from the Sargasso Sea reveal patterns in single-cell fluorescence distributions within Prochlorococcus spp. populations which appear to correspond to decreasing mixing rates and photoacclimation during the day, and increased mixing at night. Reciprocal light shift experiments were used to quantify the photoacclimation kinetics for Prochlorococcus spp. fluorescence. A laboratory continuous culture system was developed which could simulate the effects of mixing across a light gradient at the level of the individual cell. This system was operated at four different simulated diffusivities. Prochlorococcus marinus strain Med4 fluorescence distributions show distinct patterns in the mean and higher moments which are consistent with a simple quasi-steady turbulent diffusionphotoacclimation model. In both, daytime photoacclimation drove the development of a gradient in mean fluorescence, a decrease in variance overall, and skewing of distributions away from the boundaries. These results suggest that picophytoplankton single-cell fluorescence distributions could prove to be a useful diagnostic indicator of the mixing environment.
    Description: This project received primary financial support from the Office of Naval Research, with additional support from the National Science Foundation, the Environmental Protection Agency, Sea Grant, M.I.T. Sloan funds and M.I.T. Department of Civil and Environmental Engineering funds. I also wish to acknowledge support from a Rockwell Fellowship and a National Science Foundation Graduate Fellowship.
    Keywords: Phytoplankton ; Photosynthesis ; Primary productivity ; Acclimatization ; Oceanic mixing ; Oceanus (Ship : 1975-) Cruise OC214 ; Endeavor (Ship: 1976-) Cruise EN232
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  • 24
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecology and Evolution 3 (2013): 1149–1162, doi:10.1002/ece3.525.
    Description: Direct and indirect effects of warming are increasingly modifying the carbon-rich vegetation and soils of the Arctic tundra, with important implications for the terrestrial carbon cycle. Understanding the biological and environmental influences on the processes that regulate foliar carbon cycling in tundra species is essential for predicting the future terrestrial carbon balance in this region. To determine the effect of climate change impacts on gas exchange in tundra, we quantified foliar photosynthesis (Anet), respiration in the dark and light (RD and RL, determined using the Kok method), photorespiration (PR), carbon gain efficiency (CGE, the ratio of photosynthetic CO2 uptake to total CO2 exchange of photosynthesis, PR, and respiration), and leaf traits of three dominant species – Betula nana, a woody shrub; Eriophorum vaginatum, a graminoid; and Rubus chamaemorus, a forb – grown under long-term warming and fertilization treatments since 1989 at Toolik Lake, Alaska. Under warming, B. nana exhibited the highest rates of Anet and strongest light inhibition of respiration, increasing CGE nearly 50% compared with leaves grown in ambient conditions, which corresponded to a 52% increase in relative abundance. Gas exchange did not shift under fertilization in B. nana despite increases in leaf N and P and near-complete dominance at the community scale, suggesting a morphological rather than physiological response. Rubus chamaemorus, exhibited minimal shifts in foliar gas exchange, and responded similarly to B. nana under treatment conditions. By contrast, E. vaginatum, did not significantly alter its gas exchange physiology under treatments and exhibited dramatic decreases in relative cover (warming: −19.7%; fertilization: −79.7%; warming with fertilization: −91.1%). Our findings suggest a foliar physiological advantage in the woody shrub B. nana that is further mediated by warming and increased soil nutrient availability, which may facilitate shrub expansion and in turn alter the terrestrial carbon cycle in future tundra environments.
    Description: This study was supported by the National Science Foundation #0732664; Australian Research Council DP0986823; and Marsden Fund of the Royal Society of New Zealand.
    Keywords: Betula nana nana ; Carbon gain efficiency ; Eriophorum vaginatum ; Kok effect ; Photosynthesis ; Respiration ; Rubus chamaemorus ; Tundra shrub encroachment
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  • 25
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 9 (2018): e02337, doi:10.1002/ecs2.2337.
    Description: Camera‐based observation of forest canopies allows for low‐cost, continuous, high temporal‐spatial resolutions of plant phenology and seasonality of functional traits. In this study, we extracted canopy color index (green chromatic coordinate, Gcc) from the time‐series canopy images provided by a digital camera in a deciduous forest in Massachusetts, USA. We also measured leaf‐level photosynthetic activities and leaf area index (LAI) development in the field during the growing season, and corresponding leaf chlorophyll concentrations in the laboratory. We used the Bayesian change point (BCP) approach to analyze Gcc. Our results showed that (1) the date of starting decline of LAI (DOY 263), defined as the start of senescence, could be mathematically identified from the autumn Gcc pattern by analyzing change points of the Gcc curve, and Gcc is highly correlated with LAI after the first change point when LAI was decreasing (R2 = 0.88, LAI 〈 2.5 m2/m2); (2) the second change point of Gcc (DOY 289) started a more rapid decline of Gcc when chlorophyll concentration and photosynthesis rates were relatively low (13.4 ± 10.0% and 23.7 ± 13.4% of their maximum values, respectively) and continuously reducing; and (3) the third change point of Gcc (DOY 295) marked the end of growing season, defined by the termination of photosynthetic activities, two weeks earlier than the end of Gcc curve decline. Our results suggested that with the change point analysis, camera‐based phenology observation can effectively quantify the dynamic pattern of the start of senescence (with declining LAI) and the end of senescence (when photosynthetic activities terminated) in the deciduous forest.
    Description: Priority Academic Program Development of Jiangsu Higher Education Institutions in Discipline of Environmental Science and Engineer in Nanjing Forest University; China Scholarship Council Grant Number: 201506190095; Brown University Seed Funds for International Research Projects on the Environment
    Keywords: Chlorophyll ; Digital camera ; Leaf area index ; Phenology ; Photosynthesis ; Senescence
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  • 26
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Science of The Total Environment 644 (2018): 439-451, doi:10.1016/j.scitotenv.2018.06.269.
    Description: Characterized by the noticeable seasonal patterns of photosynthesis, mid-to-high latitude forests are sensitive to climate change and crucial for understanding the global carbon cycle. To monitor the seasonal cycle of the canopy photosynthesis from space, several remote sensing based indexes, such as normalized difference vegetation index (NDVI), enhanced vegetation index (EVI) and leaf area index (LAI), have been implemented within the past decades. Recently, satellite-derived sun-induced fluorescence (SIF) has shown great potentials of providing retrievals that are more related to photosynthesis process. However, the potentials of different canopy measurements have not been thoroughly assessed in the context of recent advances of new satellites and proposals of improved indexes. Here, we present a cross-site intercomparison of one emerging remote sensing based index of phenological index (PI) and two SIF datasets against the conventional indexes of NDVI, EVI and LAI to capture the seasonal cycles of canopy photosynthesis. NDVI, EVI, LAI and PI were calculated from Moderate Resolution Imaging Spectroradiometer (MODIS) measurements, while SIF were evaluated from Global Ozone Monitoring Experiment-2 (GOME-2) and Orbiting Carbon Observatory-2 (OCO-2) observations. Results indicated that GOME-2 SIF was highly correlated with gross primary productivity (GPP) and absorbed photosynthetically active radiation (APAR) during the growing seasons. Key phenological metrics captured by SIF from GOME-2 and OCO-2 matched closely with photosynthesis phenology as inferred by GPP. However, the applications of OCO-2 SIF for phenological studies may be limited only for a small range of sites (at site-level) due to a limited spatial sampling. Among the MODIS estimations, PI and NDVI provided most reliable predictions of start of growing seasons, while no indexes accurately captured the end of growing seasons.
    Description: This work was supported by the Chinese Arctic and Antarctic Administration, National Natural Science Foundation of China (Grant Nos. 41676176 and 41676182), the Chinese Polar Environment Comprehensive Investigation, Assessment Program (Grant No. 312231103). This work was also supported by the Fundamental Research Funds for the 440 Central Universities
    Description: 2020-07-11
    Keywords: Phenology ; Remote sensing ; Photosynthesis ; OCO-2 ; SIF ; NDVI ; EVI ; PI ; LAI
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  • 27
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    In:  http://aquaticcommons.org/id/eprint/20862 | 9 | 2016-06-30 16:07:47 | 20862 | Central Caribbean Marine Institute
    Publication Date: 2021-07-13
    Description: Ocean acidification poses a serious threat to a broad suite of calcifying organisms. Scleractinian corals and cal-careous algae that occupy shallow, tropical waters are vulnerable to global changes in ocean chemistry be-cause they already are subject to stressful and variable carbon dynamics at the local scale. For example, netheterotrophy increases carbon dioxide concentrations, and pH varies with diurnal fluctuations in photosyn-thesis and respiration. Few researchers, however, have investigated the possibility that carbon dioxide con-sumption during photosynthesis by non-calcifying photoautotrophs, such as seagrasses, can amelioratedeleterious effects of ocean acidification on sympatric calcareous algae. Naturally occurring variations inthe density of seagrasses and associated calcareous algae provide an ecologically relevant test of the hypoth-esis that dielfluctuations in water chemistry driven by cycles of photosynthesis and respiration withinseagrass beds create microenvironments that enhance macroalgal calcification. In Grape Tree Bay off LittleCayman Island BWI, we quantified net production and characterized calcification for thalli of the calcareousgreen algaHalimeda incrassatagrowing within beds ofThalassia testudinumwith varying shoot densities. Re-sults indicated that individualH.incrassatathalli were ~6% more calcified in dense seagrass beds. On an arealbasis, however, far more calcium carbonate was produced byH.incrassatain areas where seagrasses wereless dense due to higher rates of production. In addition, diel pH regimes in vegetated and unvegetatedareas within the lagoon were not significantly different, suggesting a high degree of water exchange andmixing throughout the lagoon. These results suggest that, especially in well-mixed lagoons, carbonate pro-duction by calcareous algae may be more related to biotic interactions between seagrasses and calcareousalgae than to seagrass-mediated changes in local water chemistry.
    Keywords: Biology ; Chemistry ; Ecology ; Environment ; Calcareous algae ; Calcification ; Ocean acidification ; Photosynthesis ; Respiration ; Seagrass
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  • 28
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    In:  http://aquaticcommons.org/id/eprint/22738 | 18721 | 2018-05-18 22:45:45 | 22738 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-09
    Description: Taking into account the high potential of cyanobacteria to tolerate salinity stress, researches have evaluated the morphological and physiological behavior of these microorganisms in recent years. This study is conducted to investigate the impact of different concentrations of NaCl on the morphological and physiological traits of Nostoc sp. ISC 101. Biometrical and morphological observations are carried out by light and scanning electron microscopy. Results indicated that vegetative cells and heterocysts were wider in control treatment in comparison with samples under different amounts of salinity. Akinete formation began in 3% NaCl and reached to highest level in 5%. The relative degeneration of structure of the cells in 5% salt was demonstrated. According to physiological impresses of salt it was found that growth rate decreased with increasing salinity. Total chlorophyll content stimulated in 1% salinity, but in the higher concentration it decreased vice versa. The rate of APC, PE, PC increased in 1% salinity, although in high level concentration they would be diminished. Photosynthesis rate was also decreased with increasing salinity but it was stimulated slightly in 1% NaCl. All in consequence, despite of acclimation of this strain to marine environment, not much tolerance was seen in the mentioned treatments, and increasing salinity to upper than 1% NaCl had destructive effects, and cyanobacterium maintained its growth rate at slightly saline environments.
    Keywords: Biology ; Environment ; Growth ; Morphology ; Nostoc ; Photosynthesis ; Salinity ; SEM ; 16S rRNA ; Biology ; Physiology ; Iran
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  • 29
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25087 | 18721 | 2018-08-23 05:33:10 | 25087 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: Estimation of Artemia resources on Uromieh Lake during (years2002-2003) showed huge reduction of Artemia cysts and biomass stocks than the previous years. Reduction of average annual precipitation in west Azerbaijan province during last 6 years than previous years from 32centimeter to 21centimeter has reduced the annual entered waters from the lakes basin rivers into the lake from(3.5-4.0)billion cubic meters to(1.8)billion cubic meters. During this period the entered fresh water in to the lake has been reduced, however the evaporation rate from 5750 square kilometer of Lake Surface has been continued at 3to4billion cubic meters per year. In spite of the fact that there are more than 5 billion tons salts on Uromieh Lake and that about 2 billion cubic meters of lake water is decreased annually due to negative balance between entered water and evaporation rate from Lake Surface, the water salinity on the lake has increased From 220 g/l in 1999 up to high saturated level atthe present. Increasing salinity on lake water up to high saturated level has caused to salt precipitate on lakes bottom and the Ionic exchange between lake water and beds natural precipitates that necessary to provide needed ions to photosynthesis was interrupted, so that the quality and quantity of primary productions on the lake has decreased and the lake has change to oligotrophic condition and in some seasons the turbidity of the lake has increased up to 5 meters. Above mentioned integrated factors have reduced Artemia stocks on lake during a few last years and this has resulted in stopping the cysts and biomass harvesting.
    Keywords: Fisheries ; Iran ; West Azerbaijan province ; Orumieh Lake ; Artemia ; Population ; Biomass ; Cyst ; Salinity ; Photosynthesis
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
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  • 30
    Publication Date: 2021-05-19
    Description: Estimation of Artemia resources on Uromieh Lake during (years2002-2003) showed huge reduction of Artemia cysts and biomass stocks than the previous years. Reduction of average annual precipitation in west Azerbaijan province during last 6 years than previous years from 32centimeter to 21centimeter has reduced the annual entered waters from the lakes basin rivers into the lake from(3.5-4.0)billion cubic meters to(1.8)billion cubic meters. During this period the entered fresh water in to the lake has been reduced, however the evaporation rate from 5750 square kilometer of Lake Surface has been continued at 3to4billion cubic meters per year. In spite of the fact that there are more than 5 billion tons salts on Uromieh Lake and that about 2 billion cubic meters of lake water is decreased annually due to negative balance between entered water and evaporation rate from Lake Surface, the water salinity on the lake has increased From 220 g/l in 1999 up to high saturated level atthe present. Increasing salinity on lake water up to high saturated level has caused to salt precipitate on lakes bottom and the Ionic exchange between lake water and beds natural precipitates that necessary to provide needed ions to photosynthesis was interrupted, so that the quality and quantity of primary productions on the lake has decreased and the lake has change to oligotrophic condition and in some seasons the turbidity of the lake has increased up to 5 meters. Above mentioned integrated factors have reduced Artemia stocks on lake during a few last years and this has resulted in stopping the cysts and biomass harvesting.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Artemia ; Population ; Biomass ; Cyst ; Salinity ; Photosynthesis
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 59pp.
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  • 31
    Publication Date: 2021-05-19
    Description: The article presents a methodical approach to the integral assessment of the toxic effect of various toxicants on photosensitive organisms. The toxic compounds, affecting aquatic organisms in general and the process of photosynthesis of proteins in particular, are characterized. Calculation of the new index WESI is based on the idea of residual concentrations of nitrogen and phosphorus nutrients in case of suppression of the photosynthetic process by toxic elements, namely, the activity of chlorophyll. Calculation of the index WESI is carried out using a simple formula based on the results of classification to the rank of concentrations of nitrate nitrogen or phosphates and saprobity indices S. A model for conducting an ecological classification from the ecosystem perspective for the purpose of calculating the index WESI is shown. Classification tables are presented for 9 ranks graded from the ecological point of view. A description of the ecosystem status index WESI that has been developed, a detailed procedure for its calculation, and examples of its application to various water bodies of Eurasia are given. The way of application of the index WESI in monitoring and environmental mapping is shown, as well as the criteria for its change for the decision-making system when assessing the state of a water body and for preserving the diversity of aquatic organisms under conditions of toxic effects on primary producers.
    Description: В статье представлен методический подход к интегральной оценке токсического влияния разнообразных токсикантов на фотосинтезирующие организмы. Охарактеризованы токсические соединения, воздействующие на водные организмы в целом и на процесс фотосинтеза белков в частности. В основе расчета нового индекса WESI лежит представление об остаточных концентрациях питательных элементов азота и фосфора в случае подавления токсическими элементами фотосинтетического процесса, а именно активности хлорофилла. Расчет индекса WESI проводится с использованием простой формулы по результатам классифицирования до ранга концентраций нитратного азота или фосфатов и индексов сапробности S. Показана модель проведения экологической классификации по экосистемным представлениям в целях расчета индекса WESI. Даны классификационные таблицы с экологической точки зрения по 9 рангам. Представлено описание разработанного Индекса состояния экосистемы WESI, подробная методика расчета и указаны примеры применения индекса на различных водных объектах Евразии. Показан путь применения индекса WESI в мониторинге и экологическом картографировании, а также критерии его изменения для системы принятия решений при оценке состояния водного объекта и для сохранения разнообразия организмов в условиях токсического воздействия на первичных продуцентов.
    Description: Published
    Keywords: Toxicology ; Aquatic organisms ; Mapping ; Ecosystem management ; Photosynthesis ; Primary producers ; Nitrates ; Phosphates ; Chlorophyll
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed
    Format: pp.39-43
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  • 32
    Publication Date: 2021-05-19
    Description: The hydrochemical situation of the Taganrog Bay (Azov Sea) is assessed for the period of the early summer, 2018. Sampling was carried out at 12 stations, covering the entire water area of the bay. It was found out that the increased spring flow of the Don River was markedly represented in the spatial distribution of oxygen and biogenic elements. The greatest amount of biogenic elements was found in the eastern region of the bay, directly affected by river flow. It was shown that in the western region, on the contrary, the destruction of the autochthonous organic matter prevailed. Water saturation with phosphates and silicic acid was noted, while the content of nitrates was detected down by their consumption by phytoplankton. The rate of photosynthetic processes was higher mainly in the eastern region and off the northern coast of the Taganrog Bay, which corresponded to the characteristic flow of the Don River waters.
    Description: В работе дается оценка гидрохимической обстановки Таганрогского залива в раннелетний период 2018 г. Установлено, что повышенный весенний сток р. Дон четко проявился в пространственном распределении содержания кислорода и биогенных веществ. Наибольшее количество биогенных элементов было выявлено в восточном районе залива, непосредственно подверженного влиянию речного стока. Показано, что в западном районе, напротив, преобладала деструкция автохтонного органического вещества. Отмечено насыщение воды фосфатами и кремниевой кислотой, тогда как содержание нитратов сглаживалось их потреблением фитопланктоном. Скорость фотосинтетических процессов оказалась выше преимущественно в восточном районе и у северного побережья Таганрогского залива, что соответствовало характерному поступлению речных вод р. Дон.
    Description: Published
    Keywords: River flow ; Oxigen regime ; Mineral compounds ; Mineral nitrogen ; Silicic acid ; Total nitrogen ; Total phosphorus ; Photosynthesis ; Речной сток ; Органическое вещество ; Кремнекислота ; Фотосинтез ; Кислородный режим ; Общий азот ; Общий фосфор ; ASFA_2015::B::Biogenic material ; ASFA_2015::O::Organic matter ; ASFA_2015::R::River discharge effects
    Repository Name: AquaDocs
    Type: Journal Contribution , Non Refereed
    Format: pp.122-128
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  • 33
    Publication Date: 2021-05-19
    Description: Spatio-temporal dynamics of nutrients in the deep and coastal waters of the Black Sea for the longterm period of 1996–2018 was investigated. The research was carried out in the spring (March–April–May) and summer-autumn (August–September) periods of the year. Samples were collected at a standard depth down to 200 m. It has been shown that in the deep-water area of the Black Sea, seasonal dynamics of nutrients and their distribution extremes are closely related to biological and hydrological processes in the water column. During upwelling phenomena, supplementing of the active layer with mineral nitrogen and phosphorus is observed. Accumulation of organic forms of nitrogen- and phosphorus-containing compounds during a photosynthetic process is accompanied by depletion of their mineral constituent. The dynamics of biogenic compounds in the coastal part of the sea are much less susceptible to seasonal variation. The main feature of the vertical distribution of biogenic substances in coastal waters is their highest concentration in the surface layer. Among the dynamic factors in the coastal zone, upwelling is of great importance. Detailed analysis of multi-year data from two periods (1960–1970 and 1996–2018) showed the identity of the vertical distribution of nitrogen and phosphorus concentrations in the deep sea with an increase in the portion of the organic component in the active layer in the modern period in comparison with 1960–1970.
    Description: В работе проведено исследование пространственно-временной динамики биогенных веществ в глубоководной и прибрежной акваториях Черного моря за многолетний период 1996–2018 гг. Исследования осуществлялись в весенний (март–апрель–май) и летне-осенний (август–сентябрь) сезоны года. Отбор проб проводили по стандартным горизонтам до глубины 200 м. Показано, что на глубоководной акватории Черного моря сезонная динамика и экстремумы распределения биогенных веществ тесно связаны с биологическими и гидрологическими процессами в водной толще. При подъеме глубинных вод отмечено пополнение деятельного слоя минеральными азотом и фосфором. Накопление органических форм азот- и фосфорсодержащих соединений при фотосинтезе сопровождается истощением их минеральной составляющей. Динамика биогенных соединений в прибрежной части моря в гораздо меньшей степени подвержена сезонной изменчивости. Главной особенностью вертикального распределения биогенных веществ в прибрежной зоне является их максимум в поверхностном слое. Среди гидродинамических факторов в прибрежной зоне большое значение имеет апвеллинг. Анализ многолетних данных двух периодов 1960–1970 и 1996–2018 гг. показал идентичность вертикального распределения концентраций азота и фосфора в глубоководной части моря с увеличением доли органической составляющей в деятельном слое в современный период в сравнении с 1960–1970 гг.
    Description: Published
    Keywords: Biogenic matter ; Coastal waters ; Deep-sea waters ; Organic matter ; Seasonal variations ; Phosphorus ; Coastal upwelling ; Nitrogen compounds ; Photosynthesis ; Long-term records
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed
    Format: pp.7-19
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  • 34
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5286 | 1256 | 2011-09-29 15:11:58 | 5286 | Freshwater Biological Association
    Publication Date: 2021-07-09
    Description: Mixing and transport processes in surface waters strongly influence the structure of aquatic ecosystems. The impact of mixing on algal growth is species-dependent, affecting the competition among species and acting as a selective factor for the composition of the biocoenose. Were it not for the ever-changing ”aquatic weather”, the composition of pelagic ecosystems would be relatively simple. Probably just a few optimally adapted algal species would survive in a given water-body. In contrast to terrestrial ecosystems, in which the spatial heterogeneity is primarily responsible for the abundance of niches, in aquatic systems (especially in the pelagic zone) the niches are provided by the temporal structure of physical processes. The latter are discussed in terms of the relative sizes of physical versus biological time-scales. The relevant time-scales of mixing and transport cover the range between seconds and years. Correspondingly, their influence on growth of algae is based on different mechanisms: rapid changes are relevant for the fast biological processes such as nutrient uptake and photosynthesis, and the slower changes are relevant for the less dynamic processes such as growth, respiration, mineralization, and settling of algal cells. Mixing time-scales are combined with a dynamic model of photosynthesis to demonstrate their influence on algal growth.
    Keywords: Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Phytoplankton ; Nutrients (mineral) ; Freshwater lakes ; Physical limnology ; Models ; Growth ; Photosynthesis ; Water mixing
    Repository Name: AquaDocs
    Type: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/5056 | 1256 | 2011-09-29 15:29:12 | 5056 | Freshwater Biological Association
    Publication Date: 2021-07-08
    Description: The processes of synthesis and destruction of organic matter play an important role in the ”self-cleaning” of reservoirs. The basic problem of this investigation consists of the role of phytoplankton in enriched waters of the Klyaz'minsk water reservoir through the solution of oxygen and its part in the ”self-cleaning” of the water reservoir. Observations on the interesting process of photosynthesis and the breakdown of organic matter was conducted by us on the eastern stretch of water in the Klyaz'minsk Reservoir during the growing periods of 1945 to 1948, by the widely applied bottle method (Vinberg 1934). This study reports mainly on the he vertical distribution of photosynthesis and respiration in plankton of the reservoir.
    Description: Translated from Russian into English
    Keywords: Biology ; Ecology ; Limnology ; Freshwater lakes ; Phytoplankton ; Vertical distribution ; Biological sampling ; Photosynthesis ; Russia
    Repository Name: AquaDocs
    Type: monograph
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  • 36
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/5049 | 1256 | 2011-09-29 15:28:28 | 5049 | Freshwater Biological Association
    Publication Date: 2021-07-08
    Description: The efficiency of utilisation of the sun's radiation by natural communities has not been properly demonstrated with what so far has been obtained of reliable values, and it represents a great interest in many respects. A systematic study of the biotic balance of lakes was done in the course of a succession of summers starting in 1932, extensive material was obtained, which permitted to compute a value fear the utilisation of the sun's radiation by plankton in lakes, and to compare this with corresponding values for marine plankton and terrestrial vegetation.
    Description: Translated from Russian into English
    Keywords: Biology ; Ecology ; Limnology ; Plankton ; Planktonology ; Plankton surveys ; Primary production ; Light penetration ; Photosynthesis ; Freshwater lakes
    Repository Name: AquaDocs
    Type: monograph
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: pH
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of pH made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771304
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: Nutrients
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of nutrients (phosphate, silicate, and nitrate plus nitrite) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771370
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 39
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: DIC
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of Dissolved Inorganic Carbon (DIC) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771333
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 40
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: cell size
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of cell size expressed as forward scatter as well as in equivalent spherical diameter (ESD) in microns. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771448
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
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  • 41
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: POC, PON, Chl a
    Description: The experiments were designed to test the combined effects of CO2, temperatures, and light on growth and photophysiology of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of extracted chlorophyll, particulate organic carbon (POC), and particulate organic nitrogen (PON) made over the course of the experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771594
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 42
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Coral physiological and δ15N isotopic measurements.
    Description: Experimental coral physiological and δ15N isotopic measurements in October 2012 at Reef Systems Coral Farm, Ohio. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/839920
    Description: NSF Emerging Frontiers Division (NSF EF) EF-1041124
    Keywords: Coral calcification ; Photosynthesis ; Carbon budgets ; Chlorophyll a ; Protein ; Carbohydrates ; Lipids ; Energy reserves ; Nitrogen isotopes
    Repository Name: Woods Hole Open Access Server
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  • 43
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: cell abundance
    Description: The experiments were designed to test the combined effects of three CO2 concentrations, four temperatures, and three light intensities on growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of cell abundances measured by forward scatter. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771421
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 44
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Series 3A: photophysiology
    Description: The experiments were designed to test the combined effects of CO2, temperatures, and light on the growth of the diatom T. pseudonana CCMP1014 in a multifactorial design. This dataset contains measurements of photophysiology using the Light curve (LC3) protocol of the Aquapen-C AP-C 100 fluorometer. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/771461
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1538602
    Keywords: Phytoplankton ; Diatoms ; Ocean acidification ; Multiple stressors ; Photosynthesis ; Biogenic silica
    Repository Name: Woods Hole Open Access Server
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  • 45
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Blagden, M., Harrison, J. L., Minocha, R., Sanders-DeMott, R., Long, S., & Templer, P. H. Climate change influences foliar nutrition and metabolism of red maple (Acer rubrum) trees in a northern hardwood forest. Ecosphere, 13(2), (2022): e03859. https://doi.org/10.1002/ecs2.3859.
    Description: Mean annual air temperatures are projected to increase, while the winter snowpack is expected to shrink in depth and duration for many mid- and high-latitude temperate forest ecosystems over the next several decades. Together, these changes will lead to warmer growing season soil temperatures and an increased frequency of soil freeze–thaw cycles (FTCs) in winter. We took advantage of the Climate Change Across Seasons Experiment (CCASE) at the Hubbard Brook Experimental Forest in the White Mountains of New Hampshire, USA, to determine how these changes in soil temperature affect foliar nitrogen (N) and carbon metabolism of red maple (Acer rubrum) trees in 2015 and 2017. Earlier work from this study revealed a similar increase in foliar N concentrations with growing season soil warming, with or without the occurrence of soil FTCs in winter. However, these changes in soil warming could differentially affect the availability of cellular nutrients, concentrations of primary and secondary metabolites, and the rates of photosynthesis that are all responsive to climate change. We found that foliar concentrations of phosphorus (P), potassium (K), N, spermine (a polyamine), amino acids (alanine, histidine, and phenylalanine), chlorophyll, carotenoids, sucrose, and rates of photosynthesis increased with growing season soil warming. Despite similar concentrations of foliar N with soil warming with and without soil FTCs in winter, winter soil FTCs affected other foliar metabolic responses. The combination of growing season soil warming and winter soil FTCs led to increased concentrations of two polyamines (putrescine and spermine) and amino acids (alanine, proline, aspartic acid, γ-aminobutyric acid, valine, leucine, and isoleucine). Treatment-specific metabolic changes indicated that while responses to growing season warming were more connected to their role as growth modulators, soil warming + FTC treatment-related effects revealed their dual role in growth and stress tolerance. Together, the results of this study demonstrate that growing season soil warming has multiple positive effects on foliar N and cellular metabolism in trees and that some of these foliar responses are further modified by the addition of stress from winter soil FTCs.
    Description: This research was supported by an NSF Long Term Ecological Research (LTER) Grant to Hubbard Brook (NSF 1114804 and 1637685) and an NSF CAREER grant to PHT (NSF DEB1149929). RSD was supported by NSF DGE0947950, a Boston University (BU) Dean's Fellowship, and the BU Program in Biogeoscience. Jamie Harrison was supported by a BU Dean's Fellowship. Megan Blagden was supported by a BU Undergraduate Research Opportunity Program fellowship. This manuscript is a contribution to the Hubbard Brook Ecosystem Study. Hubbard Brook is part of the LTER network, which is supported by the NSF.
    Keywords: Amino acids ; Chlorophyll ; HPLC ; Inorganic nutrients ; Metabolism ; Photosynthesis ; Polyamines ; Soil freeze-thaw cycles ; Soil warming ; Stress ; Sugars
    Repository Name: Woods Hole Open Access Server
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  • 46
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Diaz, J. M., Plummer, S., Hansel, C. M., Andeer, P. F., Saito, M. A., & McIlvin, M. R. NADPH-dependent extracellular superoxide production is vital to photophysiology in the marine diatom Thalassiosira oceanica. Proceedings of the National Academy of Sciences of the United States of America, 116 (33), (2019): 16448-16453, doi: 10.1073/pnas.1821233116.
    Description: Reactive oxygen species (ROS) like superoxide drive rapid transformations of carbon and metals in aquatic systems and play dynamic roles in biological health, signaling, and defense across a diversity of cell types. In phytoplankton, however, the ecophysiological role(s) of extracellular superoxide production has remained elusive. Here, the mechanism and function of extracellular superoxide production by the marine diatom Thalassiosira oceanica are described. Extracellular superoxide production in T. oceanica exudates was coupled to the oxidation of NADPH. A putative NADPH-oxidizing flavoenzyme with predicted transmembrane domains and high sequence similarity to glutathione reductase (GR) was implicated in this process. GR was also linked to extracellular superoxide production by whole cells via quenching by the flavoenzyme inhibitor diphenylene iodonium (DPI) and oxidized glutathione, the preferred electron acceptor of GR. Extracellular superoxide production followed a typical photosynthesis-irradiance curve and increased by 30% above the saturation irradiance of photosynthesis, while DPI significantly impaired the efficiency of photosystem II under a wide range of light levels. Together, these results suggest that extracellular superoxide production is a byproduct of a transplasma membrane electron transport system that serves to balance the cellular redox state through the recycling of photosynthetic NADPH. This photoprotective function may be widespread, consistent with the presence of putative homologs to T. oceanica GR in other representative marine phytoplankton and ocean metagenomes. Given predicted climate-driven shifts in global surface ocean light regimes and phytoplankton community-level photoacclimation, these results provide implications for future ocean redox balance, ecological functioning, and coupled biogeochemical transformations of carbon and metals.
    Description: This work was supported by a postdoctoral fellowship from the Ford Foundation (to J.M.D.), the National Science Foundation (NSF) under grants OCE 1225801 (to J.M.D.) and OCE 1246174 (to C.M.H.), a Junior Faculty Seed Grant from the University of Georgia Research Foundation (to J.M.D.), and a National Science Foundation Graduate Research Fellowship (to S.P.). The FIRe was purchased through a NSF equipment improvement grant (1624593).The authors thank Melissa Soule for assistance with LC/MS/MS analysis of peptide samples.
    Keywords: Reactive oxygen species ; Photosynthesis ; Oxidative stress ; Biogeochemistry
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  • 47
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2014. This is the author's version of the work. It is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 111 (2014): 8856-8860, doi:10.1073/pnas.1320761111.
    Description: The traditional view of forest dynamics originated by Kira, Shidei, and Odum suggests a decline in net primary productivity (NPP) in ageing forests due to stabilized gross primary productivity (GPP) and continuously increased autotrophic respiration (Ra). The validity of these trends in GPP and Ra is, however, very difficult to test because of the lack of long-term ecosystem-scale field observations of both GPP and Ra. Ryan and colleagues have proposed an alternative hypothesis drawn from site-specific results that aboveground respiration and belowground allocation decreased in ageing forests. Here we analyzed data from a recently assembled global database of carbon fluxes and show that the classical view of the mechanisms underlying the age-driven decline in forest NPP is incorrect and thus support Ryan’s alternative hypothesis. Our results substantiate the age-driven decline in NPP, but in contrast to the traditional view, both GPP and Ra decline in ageing boreal and temperate forests. We find that the decline in NPP in ageing forests is primarily driven by GPP, which decreases more rapidly with increasing age than Ra does, but the ratio of NPP/GPP remains approximately constant within a biome. Our analytical models describing forest succession suggest that dynamic forest ecosystem models that follow the traditional paradigm need to be revisited.
    Description: We thank all site investigators, their funding agencies and the various regional flux networks (Afriflux, AmeriFlux, AsiaFlux, CarboAfrica, CarboEurope-IP, ChinaFlux, Fluxnet-Canada, KoFlux, LBA, NECC, OzFlux, TCOS-Siberia, and USCCC) and the Fluxnet project, whose support is essential for obtaining the measurement data without which this synthesis analysis would not be possible. The collection of the original global database was funded by the Research Foundation - Flanders (FWO-Vlaanderen) who supported S.L. with a post-doctoral fellowship and a research grant (FWO 1.5037.07N). J. Tang was partially supported by U.S. Department of Energy the Office of Biological and Environmental Research (DE-SC0006951), and National Science Foundation (DBI-959333 and AGS-1005663).
    Description: 2014-12-02
    Keywords: Succession ; Chronosequence ; Forest dynamics ; Photosynthesis ; Respiration ; Carbon flux ; Carbon use efficiency
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 48
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 6803–6810, doi:10.1002/2014GL061266.
    Description: We use autonomous gas measurements to examine the metabolic balance (photosynthesis minus respiration) of coastal Antarctic waters during the spring/summer growth season. Our observations capture the development of a massive phytoplankton bloom and reveal striking variability in pCO2 and biological oxygen saturation (ΔO2/Ar) resulting from large shifts in community metabolism on time scales ranging from hours to weeks. Diel oscillations in surface gases are used to derive a high-resolution time series of net community production (NCP) that is consistent with 14C-based primary productivity estimates and with the observed seasonal evolution of phytoplankton biomass. A combination of physical mixing, grazing, and light availability appears to drive variability in coastal Antarctic NCP, leading to strong shifts between net autotrophy and heterotrophy on various time scales. Our approach provides insight into the metabolic responses of polar ocean ecosystems to environmental forcing and could be employed to autonomously detect climate-dependent changes in marine primary productivity.
    Description: This study was supported by funds from the U.S. National Science Foundation (OPP awards ANT-0823101, ANT-1043559, ANT-1043593, and ANT-1043532) as well as support for PDT and ECA from the National Science and Engineering Research Council of Canada.
    Description: 2015-04-03
    Keywords: Photosynthesis ; Respiration ; Net community production ; DO2/Ar ; CO2 ; Antarctica
    Repository Name: Woods Hole Open Access Server
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  • 49
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2017. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part I: Oceanographic Research Papers 130 (2017): 1-11, doi:10.1016/j.dsr.2017.10.005.
    Description: Modeling studies have shown that mesoscale and submesoscale processes can stimulate phytoplankton productivity and export production. Here, we present observations from an undulating, towed Video Plankton Recorder (VPR-II) in the tropical Atlantic. The VPR-II collected profiles of oxygen, fluorescence, temperature and salinity in the upper 140 m of the water column at a spatial resolution of 1 m in the vertical and 〈2 km in the horizontal. The data reveal remarkable "hotspots", i.e. locations 5 to 10 km wide which have elevated fluorescence and decreased oxygen, both of which are likely the result of intense submesoscale upwelling. Based on estimates of source water, estimated from identical temperature and salinity surfaces, hotspots are more often areas of net respiration than areas of net production — although the inferred changes in oxygen are subject to uncertainty in the determination of the source of the upwelled waters since the true source water may not have been sampled. We discuss the spatial distribution of these hotspots and present a conceptual model outlining their possible generation and decline. Simultaneous measurements of O2/Ar in the mixed layer from a shipboard mass spectrometer provide estimates of rates of surface net community production. We find that the subsurface biological hotspots are often expressed as an increase in mixed layer rates of net community production. Overall, the large number of these hotspots support the growing evidence that submesoscale processes are important drivers in upper ocean biological production.
    Description: Funding for this work came from the National Science Foundation (R.H.R.S. and D.J.M) (OCE-0925284, OCE-1048897, and OCE- 1029676) and the National Aeronautics and Space Administration (D.J.M.) (NNX08AL71G and NNX13AE47G).
    Keywords: Net Community Production ; Photosynthesis ; Respiration ; Oxygen ; Fluorescence ; Patchiness ; Hotspots ; O2/Ar
    Repository Name: Woods Hole Open Access Server
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  • 50
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 232, doi:10.3389/fmars.2016.00232.
    Description: The reactive oxygen species (ROS) superoxide has been implicated in both beneficial and detrimental processes in coral biology, ranging from pathogenic disease resistance to coral bleaching. Despite the critical role of ROS in coral health, there is a distinct lack of ROS measurements and thus an incomplete understanding of underpinning ROS sources and production mechanisms within coral systems. Here, we quantified in situ extracellular superoxide concentrations at the surfaces of aquaria-hosted Porites astreoides during a diel cycle. High concentrations of superoxide (~10's of nM) were present at coral surfaces, and these levels did not change significantly as a function of time of day. These results indicate that the coral holobiont produces extracellular superoxide in the dark, independent of photosynthesis. As a short-lived anion at physiological pH, superoxide has a limited ability to cross intact biological membranes. Further, removing surface mucus layers from the P. astreoides colonies did not impact external superoxide concentrations. We therefore attribute external superoxide derived from the coral holobiont under these conditions to the activity of the coral host epithelium, rather than mucus-derived epibionts or internal sources such as endosymbionts (e.g., Symbiodinium). However, endosymbionts likely contribute to internal ROS levels via extracellular superoxide production. Indeed, common coral symbionts, including multiple strains of Symbiodinium (clades A to D) and the bacterium Endozoicomonas montiporae LMG 24815, produced extracellular superoxide in the dark and at low light levels. Further, representative P. astreoides symbionts, Symbiodinium CCMP2456 (clade A) and E. montiporae, produced similar concentrations of superoxide alone and in combination with each other, in the dark and low light, and regardless of time of day. Overall, these results indicate that healthy, non-stressed P. astreoides and representative symbionts produce superoxide externally, which is decoupled from photosynthetic activity and circadian control. Corals may therefore produce extracellular superoxide constitutively, highlighting an unclear yet potentially beneficial role for superoxide in coral physiology and health.
    Description: This work was supported by a Postdoctoral Fellowship from the Ford Foundation (JD), the National Science Foundation under grants OCE 1225801 (JD) and OCE 1233612 (AA), the Ocean and Climate Change Institute of the Woods Hole Oceanographic Institution (CH), a BIOS Grant in aid award (SM), the Sidney Stern Memorial Trust (CH and AA), as well as an anonymous donor.
    Keywords: Coral ; Superoxide ; Reactive oxygen species ; Photosynthesis ; Symbiodinium ; Stress
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  • 51
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Global Biogeochemical Cycle 28 (2014): 538–552, doi:10.1002/2013GB004704.
    Description: The triple oxygen isotopic composition of dissolved oxygen (17Δdis) was added to the ocean ecosystem and biogeochemistry component of the Community Earth System Model, version 1.1.1. Model simulations were used to investigate the biological and physical dynamics of 17Δdis and assess its application as a tracer of gross photosynthetic production (gross oxygen production (GOP)) of O2 in the ocean mixed layer. The model reproduced large-scale patterns of 17Δdis found in observational data across diverse biogeographical provinces. Mixed layer model performance was best in the Pacific and had a negative bias in the North Atlantic and a positive bias in the Southern Ocean. Based on model results, the steady state equation commonly used to calculate GOP from tracer values overestimated the globally averaged model GOP by 29%. Vertical entrainment/mixing and the time rate of change of 17Δdis were the two largest sources of bias when applying the steady state method to calculate GOP. Entrainment/mixing resulted in the largest overestimation in midlatitudes and during summer and fall and almost never caused an underestimation of GOP. The tracer time rate of change bias resulted both in underestimation of GOP (e.g., during spring blooms at high latitudes) and overestimation (e.g., during the summer following a bloom). Seasonally, bias was highest in the fall (September-October-November in the Northern Hemisphere, March-April-May in the Southern), overestimating GOP by 62%, globally averaged. Overall, the steady state method was most accurate in equatorial and low-latitude regions where it estimated GOP to within ±10%. Field applicable correction terms are derived for entrainment and mixing that capture 86% of model vertical bias and require only mixed layer depth history and triple oxygen isotope measurements from two depths.
    Description: We acknowledge support from Center for Microbial Oceanography Research and Education (CMORE) (NSF EF-0424599) and NOAA Climate Program Office (NA 100AR4310093).
    Description: 2014-11-23
    Keywords: Primary production ; Triple oxygen isotope ; Photosynthesis ; Gross primary production ; Carbon ; Oxygen
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 52
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Inomura, K., Deutsch, C., Wilson, S. T., Masuda, T., Lawrenz, E., Lenka, B., Sobotka, R., Gauglitz, J. M., Saito, M. A., Prášil, O., & Follows, M. J. Quantifying oxygen management and temperature and light dependencies of nitrogen fixation by Crocosphaera watsonii. Msphere, 4(6), (2019): e00531-19, doi: 10.1128/msphere.00531-19.
    Description: Crocosphaera is a major dinitrogen (N2)-fixing microorganism, providing bioavailable nitrogen (N) to marine ecosystems. The N2-fixing enzyme nitrogenase is deactivated by oxygen (O2), which is abundant in marine environments. Using a cellular scale model of Crocosphaera sp. and laboratory data, we quantify the role of three O2 management strategies by Crocosphaera sp.: size adjustment, reduced O2 diffusivity, and respiratory protection. Our model predicts that Crocosphaera cells increase their size under high O2. Using transmission electron microscopy, we show that starch granules and thylakoid membranes are located near the cytoplasmic membranes, forming a barrier for O2. The model indicates a critical role for respiration in protecting the rate of N2 fixation. Moreover, the rise in respiration rates and the decline in ambient O2 with temperature strengthen this mechanism in warmer water, providing a physiological rationale for the observed niche of Crocosphaera at temperatures exceeding 20°C. Our new measurements of the sensitivity to light intensity show that the rate of N2 fixation reaches saturation at a lower light intensity (∼100 μmol m−2 s−1) than photosynthesis and that both are similarly inhibited by light intensities of 〉500 μmol m−2 s−1. This suggests an explanation for the maximum population of Crocosphaera occurring slightly below the ocean surface.
    Description: We thank Stephanie Dutkiewicz and Sallie W. Chisholm for useful discussion, Martin Lukeš for technical assistance for the N2 fixation measurement, and the members of Writing and Communication Center at MIT for their advice on writing. This research was supported by the Japan Student Service Organization (JASSO) (grant L11171020001 to K.I.), the Gordon and Betty Moore Foundation (grant GBMF 3775 to C.D. and grant GBMF 3778 to M.J.F.), the U.S. National Science Foundation (grant OCE-1756524 to S.T.W., grant OCE-1558702 to M.J.F., and grant OCE-PRF 1421196 to J.M.G), the Simons Foundation (Simons Postdoctoral Fellowship in Marine Microbial Ecology award 544338 to K.I., Simons Collaboration on Ocean Processes and Ecology award 329108 to M.J.F., Simons Collaboration on Computational BIOgeochemical Modeling of Marine EcosystemS [CBIOMES] award 549931 to M.J.F.), the Czech Science Foundation (GAČR) (grant 16-15467S to O.P.), and the National Sustainability Programme (NPU) (grant LO1416 Algatech plus to O.P.).
    Keywords: Crocosphaera ; Carbon ; Cell flux model ; Daily cycle ; Iron ; Light ; Nitrogen ; Nitrogen fixation ; Oxygen ; Photosynthesis ; Temperature
    Repository Name: Woods Hole Open Access Server
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  • 53
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hawco, N. J., Barone, B., Church, M. J., Babcock-Adams, L., Repeta, D. J., Wear, E. K., Foreman, R. K., Bjorkman, K. M., Bent, S., Van Mooy, B. A. S., Sheyn, U., DeLong, E. F., Acker, M., Kelly, R. L., Nelson, A., Ranieri, J., Clemente, T. M., Karl, D. M., & John, S. G. Iron depletion in the deep chlorophyll maximum: mesoscale eddies as natural iron fertilization experiments. Global Biogeochemical Cycles, 35(12), (2021): e2021GB007112, https://doi.org/10.1029/2021GB007112.
    Description: In stratified oligotrophic waters, phytoplankton communities forming the deep chlorophyll maximum (DCM) are isolated from atmospheric iron sources above and remineralized iron sources below. Reduced supply leads to a minimum in dissolved iron (dFe) near 100 m, but it is unclear if iron limits growth at the DCM. Here, we propose that natural iron addition events occur regularly with the passage of mesoscale eddies, which alter the supply of dFe and other nutrients relative to the availability of light, and can be used to test for iron limitation at the DCM. This framework is applied to two eddies sampled in the North Pacific Subtropical Gyre. Observations in an anticyclonic eddy center indicated downwelling of iron-rich surface waters, leading to increased dFe at the DCM but no increase in productivity. In contrast, uplift of isopycnals within a cyclonic eddy center increased supply of both nitrate and dFe to the DCM, and led to dominance of picoeukaryotic phytoplankton. Iron addition experiments did not increase productivity in either eddy, but significant enhancement of leucine incorporation in the light was observed in the cyclonic eddy, a potential indicator of iron stress among Prochlorococcus. Rapid cycling of siderophores and low dFe:nitrate uptake ratios also indicate that a portion of the microbial community was stressed by low iron. However, near-complete nitrate drawdown in this eddy, which represents an extreme case in nutrient supply compared to nearby Hawaii Ocean Time-series observations, suggests that recycling of dFe in oligotrophic ecosystems is sufficient to avoid iron limitation in the DCM under typical conditions.
    Description: The expedition and analyses were supported by the Simons Foundation SCOPE Grant 329108 to S. G. John, M. J. Church, D. J. Repeta, B. Van Mooy, E. F. DeLong, and D. M. Karl. N. J. Hawco was supported by a Simons Foundation Marine Microbial Ecology and Evolution postdoctoral fellowship (602538) and Simons Foundation grant 823167.
    Keywords: Chlorophyll ; Photosynthesis ; Iron limitation ; Oligotrophic ; Prochlorococcus ; Eddies
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  • 54
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    National Institute of Water and Atmopheric Research (NIWA) | Wellington, New Zealand
    Publication Date: 2023-06-01
    Description: "Sea Links" is designed to be used as a supplementary resource to support the teaching and learning of Science and Biology at Level 7 (Year 12). This resource also complements the "Sea and Learn" programme resources. The planktonic (ocean's water column and the organisms within it) food web is the resource's focus of study. It is intended for use with students at Years 11, 12 and 13, though it may be appropriate at other levels too. As they study the marine ecosystem, they will be rewarded by a number of surprises, including the variety of animals, and the unexpected direction of the energy flow that may occur when nutrient levels are low.
    Description: Published
    Description: Not Known
    Keywords: Abiotic factors ; Phytoplankton ; Zooplankton ; Planktonic migrations ; Myxotrophy ; Photosynthesis ; Euphotic zone ; Chrysophyta ; Pleurosigma ; Diatoms ; ASFA_2015::F::Food webs ; ASFA_2015::P::Plankton studies ; ASFA_2015::T::Teaching aids
    Repository Name: AquaDocs
    Type: Book/Monograph/Conference Proceedings
    Format: 135pp.
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  • 55
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2016-09-03
    Description: Author: Nicholas S. Wigginton
    Keywords: Photosynthesis
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 56
    Publication Date: 2003-12-04
    Description: The net ecosystem exchange of carbon dioxide was measured by eddy covariance methods for 3 years in two old-growth forest sites near Santarem, Brazil. Carbon was lost in the wet season and gained in the dry season, which was opposite to the seasonal cycles of both tree growth and model predictions. The 3-year average carbon loss was 1.3 (confidence interval: 0.0 to 2.0) megagrams of carbon per hectare per year. Biometric observations confirmed the net loss but imply that it is a transient effect of recent disturbance superimposed on long-term balance. Given that episodic disturbances are characteristic of old-growth forests, it is likely that carbon sequestration is lower than has been inferred from recent eddy covariance studies at undisturbed sites.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Saleska, Scott R -- Miller, Scott D -- Matross, Daniel M -- Goulden, Michael L -- Wofsy, Steven C -- da Rocha, Humberto R -- de Camargo, Plinio B -- Crill, Patrick -- Daube, Bruce C -- de Freitas, Helber C -- Hutyra, Lucy -- Keller, Michael -- Kirchhoff, Volker -- Menton, Mary -- Munger, J William -- Pyle, Elizabeth Hammond -- Rice, Amy H -- Silva, Hudson -- New York, N.Y. -- Science. 2003 Nov 28;302(5650):1554-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138, USA. saleska@fas.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/14645845" target="_blank"〉PubMed〈/a〉
    Keywords: Brazil ; Carbon/*analysis/metabolism ; Carbon Dioxide/*analysis/metabolism ; Confidence Intervals ; *Ecosystem ; Oxygen Consumption ; Photosynthesis ; Rain ; *Seasons ; *Trees/growth & development/metabolism ; Wood
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 57
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2003-03-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Allen, John F -- New York, N.Y. -- Science. 2003 Mar 7;299(5612):1530-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Plant Biochemistry, Center for Chemistry and Chemical Engineering, Box 124, Lund University, SE-221 00 Lund, Sweden. john.allen@plantbio.lu.se〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12624254" target="_blank"〉PubMed〈/a〉
    Keywords: Algal Proteins/chemistry/genetics/isolation & purification/metabolism ; Animals ; Binding Sites ; Chlamydomonas reinhardtii/*enzymology/genetics/metabolism ; Chlorophyll/metabolism ; Electron Transport ; Fluorescence ; Gene Library ; Light ; Light-Harvesting Protein Complexes ; Models, Biological ; Mutation ; Oxidation-Reduction ; Phosphorylation ; Photosynthesis ; Photosynthetic Reaction Center Complex Proteins/*metabolism ; Plastoquinone/metabolism ; Protein-Serine-Threonine Kinases/chemistry/genetics/*isolation & ; purification/*metabolism ; Signal Transduction ; Thylakoids/*enzymology ; Transcription, Genetic
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 58
    Publication Date: 2000-03-31
    Description: Recent time-series measurements of atmospheric O2 show that the land biosphere and world oceans annually sequestered 1.4 +/- 0.8 and 2.0 +/- 0.6 gigatons of carbon, respectively, between mid-1991 and mid-1997. The rapid storage of carbon by the land biosphere from 1991 to 1997 contrasts with the 1980s, when the land biosphere was approximately neutral. Comparison with measurements of delta13CO2 implies an isotopic flux of 89 +/- 21 gigatons of carbon per mil per year, in agreement with model- and inventory-based estimates of this flux. Both the delta13C and the O2 data show significant interannual variability in carbon storage over the period of record. The general agreement of the independent estimates from O2 and delta13C is a robust signal of variable carbon uptake by both the land biosphere and the oceans.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Battle, M -- Bender, M L -- Tans, P P -- White, J W -- Ellis, J T -- Conway, T -- Francey, R J -- New York, N.Y. -- Science. 2000 Mar 31;287(5462):2467-70.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geoscience, Guyot Hall, Princeton University, Princeton, NJ 08544 USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10741962" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Carbon/*analysis/*metabolism ; Carbon Dioxide/analysis/metabolism ; Carbon Isotopes ; *Ecosystem ; Nitrogen/analysis ; Oceans and Seas ; Oxygen/*analysis ; Oxygen Consumption ; Photosynthesis
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 59
    Publication Date: 2000-09-16
    Description: Extremely halophilic archaea contain retinal-binding integral membrane proteins called bacteriorhodopsins that function as light-driven proton pumps. So far, bacteriorhodopsins capable of generating a chemiosmotic membrane potential in response to light have been demonstrated only in halophilic archaea. We describe here a type of rhodopsin derived from bacteria that was discovered through genomic analyses of naturally occuring marine bacterioplankton. The bacterial rhodopsin was encoded in the genome of an uncultivated gamma-proteobacterium and shared highest amino acid sequence similarity with archaeal rhodopsins. The protein was functionally expressed in Escherichia coli and bound retinal to form an active, light-driven proton pump. The new rhodopsin exhibited a photochemical reaction cycle with intermediates and kinetics characteristic of archaeal proton-pumping rhodopsins. Our results demonstrate that archaeal-like rhodopsins are broadly distributed among different taxa, including members of the domain Bacteria. Our data also indicate that a previously unsuspected mode of bacterially mediated light-driven energy generation may commonly occur in oceanic surface waters worldwide.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Beja, O -- Aravind, L -- Koonin, E V -- Suzuki, M T -- Hadd, A -- Nguyen, L P -- Jovanovich, S B -- Gates, C M -- Feldman, R A -- Spudich, J L -- Spudich, E N -- DeLong, E F -- HG01775-02S1/HG/NHGRI NIH HHS/ -- R01GM27750/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Sep 15;289(5486):1902-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039-0628, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10988064" target="_blank"〉PubMed〈/a〉
    Keywords: Aerobiosis ; Amino Acid Sequence ; Archaea/classification/physiology ; Bacteria/genetics ; *Bacterial Physiological Phenomena ; Cloning, Molecular ; Escherichia coli ; Gammaproteobacteria/classification/genetics/*physiology ; Molecular Sequence Data ; Oceans and Seas ; Photochemistry ; Photosynthesis ; Phylogeny ; Phytoplankton/genetics/physiology ; Protein Binding ; Proton Pumps/physiology ; Retinaldehyde/metabolism ; Rhodopsin/*physiology ; Rhodopsins, Microbial ; *Water Microbiology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 60
    Publication Date: 2001-06-16
    Description: Most microalgae are obligate photoautotrophs and their growth is strictly dependent on the generation of photosynthetically derived energy. We show that the microalga Phaeodactylum tricornutum can be genetically engineered to thrive on exogenous glucose in the absence of light through the introduction of a gene encoding a glucose transporter (glut1 or hup1). This demonstrates that a fundamental change in the metabolism of an organism can be accomplished through the introduction of a single gene. This also represents progress toward the use of fermentation technology for large-scale commercial exploitation of algae by reducing limitations associated with light-dependent growth.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zaslavskaia, L A -- Lippmeier, J C -- Shih, C -- Ehrhardt, D -- Grossman, A R -- Apt, K E -- New York, N.Y. -- Science. 2001 Jun 15;292(5524):2073-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Martek Biosciences Corp., 6480 Dobbin Road, Columbia, MD 21045, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11408656" target="_blank"〉PubMed〈/a〉
    Keywords: Biological Transport ; Cell Line, Transformed ; Cell Membrane/metabolism ; Darkness ; Diatoms/*genetics/growth & development/*metabolism ; *Genetic Engineering ; Glucose/*metabolism ; Glucose Transporter Type 1 ; Glycolysis ; Green Fluorescent Proteins ; Humans ; Light ; Luminescent Proteins/genetics/metabolism ; Membrane Proteins/genetics/metabolism ; Microscopy, Confocal ; Molecular Weight ; Monosaccharide Transport Proteins/chemistry/*genetics/metabolism ; Photosynthesis ; Recombinant Fusion Proteins/metabolism ; Symporters ; Transformation, Genetic
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-08-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ferber, D -- New York, N.Y. -- Science. 2001 Aug 24;293(5534):1425.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11520966" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon/metabolism ; Carbon Dioxide/*metabolism ; *Greenhouse Effect ; Photosynthesis ; Plant Leaves/metabolism ; Plant Roots/metabolism ; Trees/growth & development/*metabolism
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  • 62
    Publication Date: 2001-08-04
    Description: The low O2 content of the Archean atmosphere implies that methane should have been present at levels approximately 10(2) to 10(3) parts per million volume (ppmv) (compared with 1.7 ppmv today) given a plausible biogenic source. CH4 is favored as the greenhouse gas that countered the lower luminosity of the early Sun. But abundant CH4 implies that hydrogen escapes to space (upward arrow space) orders of magnitude faster than today. Such reductant loss oxidizes the Earth. Photosynthesis splits water into O2 and H, and methanogenesis transfers the H into CH4. Hydrogen escape after CH4 photolysis, therefore, causes a net gain of oxygen [CO2 + 2H2O --〉 CH4 + 2O2 --〉 CO2 + O2 + 4H(upward arrow space)]. Expected irreversible oxidation (approximately 10(12) to 10(13) moles oxygen per year) may help explain how Earth's surface environment became irreversibly oxidized.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Catling, D C -- Zahnle, K J -- McKay, C -- New York, N.Y. -- Science. 2001 Aug 3;293(5531):839-43.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Mail Stop 245-3, Space Science Division, NASA Ames Research Center, Moffett Field, CA 94035, USA. catling@humbabe.arc.nasa.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11486082" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Bacteria/metabolism ; Carbon Dioxide ; Climate ; *Earth (Planet) ; Euryarchaeota/metabolism ; *Evolution, Planetary ; Geologic Sediments/chemistry ; *Hydrogen/metabolism ; Iron/analysis/metabolism ; *Methane/metabolism ; Oxidation-Reduction ; *Oxygen/metabolism ; Photosynthesis ; Sulfur/analysis/metabolism
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  • 63
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-12-26
    Description: Previous global estimates of the human impact on terrestrial photosynthesis products depended heavily on extrapolation from plot-scale measurements. Here, we estimated this impact with the use of recent data, many of which were collected at global and continental scales. Monte Carlo techniques that incorporate known and estimated error in our parameters provided estimates of uncertainty. We estimate that humans appropriate 10 to 55% of terrestrial photosynthesis products. This broad range reflects uncertainty in key parameters and makes it difficult to ascertain whether we are approaching crisis levels in our use of the planet's resources. Improved estimates will require high-resolution global measures within agricultural lands and tropical forests.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rojstaczer, S -- Sterling, S M -- Moore, N J -- New York, N.Y. -- Science. 2001 Dec 21;294(5551):2549-52.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Hydrologic Science and Division of Earth and Ocean Sciences, Duke University, Durham, NC 27708, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11752576" target="_blank"〉PubMed〈/a〉
    Keywords: *Agriculture ; Biomass ; Computer Simulation ; Conservation of Natural Resources ; *Ecosystem ; Food ; *Forestry ; Fresh Water ; *Human Activities ; Humans ; Monte Carlo Method ; Photosynthesis ; Plant Development ; *Plants/metabolism ; Probability ; Trees
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  • 64
    Publication Date: 2001-09-05
    Description: Although C4 plant expansions have been recognized in the late Miocene, identification of the underlying causes is complicated by the uncertainties associated with estimates of ancient precipitation, temperature, and partial pressure of atmospheric carbon dioxide (PCO2). Here we report the carbon isotopic compositions of leaf wax n-alkanes in lake sediment cores from two sites in Mesoamerica that have experienced contrasting moisture variations since the last glacial maximum. Opposite isotopic trends obtained from these two sites indicate that regional climate exerts a strong control on the relative abundance of C3 and C4 plants and that in the absence of favorable moisture and temperature conditions, low PCO2 alone is insufficient to drive an expansion of C4 plants.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huang, Y -- Street-Perrott, F A -- Metcalfe, S E -- Brenner, M -- Moreland, M -- Freeman, K H -- New York, N.Y. -- Science. 2001 Aug 31;293(5535):1647-51.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geological Sciences, Brown University, Providence, RI 02912, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11533488" target="_blank"〉PubMed〈/a〉
    Keywords: Alkanes/analysis ; Atmosphere ; Carbon Dioxide ; Carbon Isotopes/analysis ; *Climate ; *Ecosystem ; Fossils ; Fresh Water ; Geologic Sediments/*chemistry ; Guatemala ; Mexico ; Photosynthesis ; *Plant Development ; Plant Leaves/chemistry ; Plants/metabolism ; Poaceae/*growth & development/metabolism ; Pollen ; Rain ; Seasons ; Temperature ; Trees/growth & development ; Weather
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-04-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schrag, Daniel P -- Linsley, Braddock K -- New York, N.Y. -- Science. 2002 Apr 12;296(5566):277-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory for Geochemical Oceanography, Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138, USA. schrag@eps.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11951026" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Calcium/analysis ; Calcium Carbonate/*chemistry ; Chemical Precipitation ; Climate ; Cnidaria/*chemistry/growth & development/physiology ; Eukaryota/*physiology ; Oceans and Seas ; Photosynthesis ; Seasons ; *Seawater ; Strontium/analysis ; *Symbiosis ; Temperature ; Time ; *Tropical Climate
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  • 66
    Publication Date: 2002-12-21
    Description: We present the first direct evidence of the presence of an intermediate singlet excited state (Sx) mediating the internal conversion from S2 to S1 in carotenoids. The S2 to Sx transition is extremely fast and is completed within approximately 50 femtoseconds. These results require a reassessment of the energy transfer pathways from carotenoids to chlorophylls in the primary step of photosynthesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cerullo, G -- Polli, D -- Lanzani, G -- De Silvestri, S -- Hashimoto, H -- Cogdell, R J -- New York, N.Y. -- Science. 2002 Dec 20;298(5602):2395-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Laboratory for Ultrafast and Ultraintense Optical Science (INFM), Dipartimento di Fisica, Politecnico di Milano, Piazza L. da Vinci 32, 20133 Milano, Italy. giulio.cerullo@fisi.polimi.it〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12493917" target="_blank"〉PubMed〈/a〉
    Keywords: Carotenoids/*chemistry/*metabolism ; Chemistry, Physical ; Chlorophyll/chemistry/metabolism ; Cyclohexanes ; Energy Transfer ; *Light ; Photosynthesis ; Physicochemical Phenomena ; Spectrum Analysis ; Temperature ; beta Carotene/*chemistry/*metabolism
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  • 67
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-03-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kerr, Richard A -- New York, N.Y. -- Science. 2002 Mar 8;295(5561):1812.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11884724" target="_blank"〉PubMed〈/a〉
    Keywords: Australia ; *Bacteria/cytology ; Cyanobacteria/cytology ; *Fossils ; Geologic Sediments/*chemistry/*microbiology ; *Life ; Paleontology ; Photosynthesis
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  • 68
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Morgan, Jack A -- New York, N.Y. -- Science. 2002 Dec 6;298(5600):1903-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉USDA-ARS Rangeland Resources Research Unit, 1701 Centre Avenue, Fort Collins, CO 80526, USA. morgan@lamar.colostate.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12471239" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere ; California ; *Carbon Dioxide/metabolism ; Climate ; *Ecosystem ; Photosynthesis ; Poaceae/*growth & development/metabolism ; Soil ; Temperature
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  • 69
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1999-08-14
    Description: Molecular fossils of biological lipids are preserved in 2700-million-year-old shales from the Pilbara Craton, Australia. Sequential extraction of adjacent samples shows that these hydrocarbon biomarkers are indigenous and syngenetic to the Archean shales, greatly extending the known geological range of such molecules. The presence of abundant 2alpha-methylhopanes, which are characteristic of cyanobacteria, indicates that oxygenic photosynthesis evolved well before the atmosphere became oxidizing. The presence of steranes, particularly cholestane and its 28- to 30-carbon analogs, provides persuasive evidence for the existence of eukaryotes 500 million to 1 billion years before the extant fossil record indicates that the lineage arose.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brocks, J J -- Logan, G A -- Buick, R -- Summons, R E -- New York, N.Y. -- Science. 1999 Aug 13;285(5430):1033-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Geosciences, University of Sydney, Sydney, NSW 2006, Australia. jochen.brocks@agso.gov.au〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10446042" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere ; Australia ; *Biological Evolution ; Biomarkers/analysis ; Cholestanes/analysis ; Cyanobacteria/physiology ; Eukaryotic Cells/*physiology ; Fossils ; Geologic Sediments/*chemistry ; Hydrocarbons/*analysis ; Lipids/*analysis ; Paleontology ; Photosynthesis ; Steroids/*analysis ; Triterpenes/*analysis
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2000-03-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kaiser, J -- New York, N.Y. -- Science. 2000 Mar 3;287(5458):1581.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10733421" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Chlamydomonas reinhardtii/*metabolism ; Hydrogen/*metabolism ; Nitrogen ; Oxygen/metabolism ; Photosynthesis
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-02-24
    Description: Devens Gust, a chemist at Arizona State University in Tempe, and a handful of colleagues have built tiny refineries that convert the energy in sunlight to chemical fuel to power nanomachines. The fuel in this case is adenosine triphosphate, the same energy-rich molecule that powers chemical reactions inside cells. At last August's meeting of the American Chemical Society in Washington, D.C., Gust reported that he and his colleagues had collaborated with other groups to run their protein-based molecular machines on little more than sunlight.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Service, R F -- New York, N.Y. -- Science. 2000 Nov 24;290(5496):1528.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11185513" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/*metabolism ; *Liposomes ; Miniaturization ; *Molecular Motor Proteins ; Photosynthesis ; Proton-Translocating ATPases/metabolism ; *Sunlight
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-04-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Woodward, F I -- New York, N.Y. -- Science. 2001 Mar 30;291(5513):2562-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK. F.I.Woodward@Sheffield.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11286281" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Carbon Dioxide/analysis/*metabolism ; Carbonic Anhydrases/metabolism ; Chloroplasts/metabolism ; Ecosystem ; Oxygen Isotopes/*analysis ; Photosynthesis ; Plant Leaves/metabolism ; Plants/*metabolism ; Water/metabolism
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  • 73
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-04-09
    Description: We determined the reproductive response of 19-year-old loblolly pine (Pinus taeda) to 4 years of carbon dioxide (CO2) enrichment (ambient concentration plus 200 microliters per liter) in an intact forest. After 3 years of CO2 fumigation, trees were twice as likely to be reproductively mature and produced three times as many cones and seeds as trees at ambient CO2 concentration. A disproportionate carbon allocation to reproduction under CO2 enrichment results in trees reaching maturity sooner and at a smaller size. This reproductive response to future increases in atmospheric CO2 concentration is expected to change loblolly dispersal and recruitment patterns.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉LaDeau, S L -- Clark, J S -- New York, N.Y. -- Science. 2001 Apr 6;292(5514):95-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology and University Program in Ecology, Duke University, Durham, NC 27708, USA. sll8@duke.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11292871" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere ; *Carbon Dioxide/metabolism/pharmacology ; *Ecosystem ; Greenhouse Effect ; Gymnosperms/growth & development/*physiology ; North Carolina ; Photosynthesis ; Probability ; Reproduction ; Seeds/metabolism ; Species Specificity ; Trees/growth & development/*physiology
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  • 74
    Publication Date: 2001-04-09
    Description: A comparative (15)N-tracer study of nitrogen dynamics in headwater streams from biomes throughout North America demonstrates that streams exert control over nutrient exports to rivers, lakes, and estuaries. The most rapid uptake and transformation of inorganic nitrogen occurred in the smallest streams. Ammonium entering these streams was removed from the water within a few tens to hundreds of meters. Nitrate was also removed from stream water but traveled a distance 5 to 10 times as long, on average, as ammonium. Despite low ammonium concentration in stream water, nitrification rates were high, indicating that small streams are potentially important sources of atmospheric nitrous oxide. During seasons of high biological activity, the reaches of headwater streams typically export downstream less than half of the input of dissolved inorganic nitrogen from their watersheds.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peterson, B J -- Wollheim, W M -- Mulholland, P J -- Webster, J R -- Meyer, J L -- Tank, J L -- Marti, E -- Bowden, W B -- Valett, H M -- Hershey, A E -- McDowell, W H -- Dodds, W K -- Hamilton, S K -- Gregory, S -- Morrall, D D -- New York, N.Y. -- Science. 2001 Apr 6;292(5514):86-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11292868" target="_blank"〉PubMed〈/a〉
    Keywords: Absorption ; Animals ; Bacteria/metabolism ; Biofilms ; *Ecosystem ; Eukaryota/metabolism ; *Fresh Water ; Fungi/metabolism ; Geologic Sediments ; Nitrates/metabolism ; Nitrogen/*metabolism ; Oxidation-Reduction ; Photosynthesis ; Quaternary Ammonium Compounds/metabolism ; Seasons ; United States
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-08-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kasting, J F -- New York, N.Y. -- Science. 2001 Aug 3;293(5531):819-20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geosciences, Pennsylvania State University, University Park, PA 16802, USA. kasting@essc.psu.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11486080" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Carbon Isotopes/analysis ; Cyanobacteria/metabolism ; *Earth (Planet) ; *Evolution, Planetary ; Geologic Sediments/chemistry ; *Hydrogen ; Methane/metabolism ; Oxidation-Reduction ; *Oxygen/metabolism ; Photosynthesis ; Sulfur Isotopes/analysis ; Temperature
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-06-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chyba, C F -- Hand, K P -- New York, N.Y. -- Science. 2001 Jun 15;292(5524):2026-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for the Study of Life in the Universe, SETI Institute, Mountain View, CA 94404, USA. chyba@seti.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11408649" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; Carbon ; *Exobiology ; *Extraterrestrial Environment ; Hydrogen ; Hydrogen Peroxide ; Ice ; *Jupiter ; Meteoroids ; Oxidation-Reduction ; *Oxygen/chemistry ; Photosynthesis ; Potassium ; Water
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  • 77
    Publication Date: 2002-10-26
    Description: Two autonomous robotic profiling floats deployed in the subarctic North Pacific on 10 April 2001 provided direct records of carbon biomass variability from surface to 1000 meters below surface at daily and diurnal time scales. Eight months of real-time data documented the marine biological response to natural events, including hydrographic changes, multiple storms, and the April 2001 dust event. High-frequency observations of upper ocean particulate organic carbon variability show a near doubling of biomass in the mixed layer over a 2-week period after the passage of a cloud of Gobi desert dust. The temporal evolution of particulate organic carbon enhancement and an increase in chlorophyll use efficiency after the dust storm suggest a biotic response to a natural iron fertilization by the dust.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bishop, James K B -- Davis, Russ E -- Sherman, Jeffrey T -- New York, N.Y. -- Science. 2002 Oct 25;298(5594):817-21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 90-1116, Berkeley, CA 94708, USA. JKBishop@lbl.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12399588" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; *Biomass ; Carbon/*analysis ; Chlorophyll/analysis ; *Dust ; Geologic Sediments/chemistry ; Iron/analysis ; Pacific Ocean ; Photosynthesis ; Phytoplankton/*growth & development ; Robotics ; *Seawater ; *Wind
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-11
    Description: Harvesting light to produce energy and oxygen (photosynthesis) is the signature of all land plants. This ability was co-opted from a precocious and ancient form of life known as cyanobacteria. Today these bacteria, as well as microscopic algae, supply oxygen to the atmosphere and churn out fixed nitrogen in Earth's vast oceans. Microorganisms may also have played a major role in atmosphere evolution before the rise of oxygen. Under the more dim light of a young sun cooler than today's, certain groups of anaerobic bacteria may have been pumping out large amounts of methane, thereby keeping the early climate warm and inviting. The evolution of Earth's atmosphere is linked tightly to the evolution of its biota.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kasting, James F -- Siefert, Janet L -- New York, N.Y. -- Science. 2002 May 10;296(5570):1066-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geosciences, 443 Deike, The Pennsylvania State University, University Park, PA 16802, USA. kasting@essc.psu.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12004117" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Biological Evolution ; Cyanobacteria/*physiology ; Earth (Planet) ; Eukaryota/*physiology ; Euryarchaeota/*physiology ; *Evolution, Planetary ; Methane/metabolism ; Nitrogen/metabolism ; Nitrogen Fixation ; Oxygen/metabolism ; Photosynthesis ; Symbiosis ; Water Microbiology
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kerr, Richard A -- New York, N.Y. -- Science. 2002 Feb 22;295(5559):1445-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11859166" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Dinosaurs ; Dust ; *Ecosystem ; Fires ; *Minor Planets ; Photosynthesis ; Smoke
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 80
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1999-05-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Foyer, C H -- Noctor, G -- New York, N.Y. -- Science. 1999 Apr 23;284(5414):599-601.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Physiology, IACR-Rothamsted, Harpenden, Herts AL5 2JQ, UK. christine.foyer@bbsrc.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10328743" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Arabidopsis/genetics/*metabolism ; Ascorbate Peroxidases ; Chloroplasts/metabolism ; Electron Transport ; *Gene Expression Regulation, Plant ; Hydrogen Peroxide/metabolism ; *Light ; Oxidation-Reduction ; Peroxidases/genetics ; Photosynthesis ; Plant Leaves/genetics/*metabolism ; Reactive Oxygen Species/metabolism ; Signal Transduction
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 81
    Publication Date: 1999-04-24
    Description: Land plants are sessile and have developed sophisticated mechanisms that allow for both immediate and acclimatory responses to changing environments. Partial exposure of low light-adapted Arabidopsis plants to excess light results in a systemic acclimation to excess excitation energy and consequent photooxidative stress in unexposed leaves. Thus, plants possess a mechanism to communicate excess excitation energy systemically, allowing them to mount a defense against further episodes of such stress. Systemic redox changes in the proximity of photosystem II, hydrogen peroxide, and the induction of antioxidant defenses are key determinants of this mechanism of systemic acquired acclimation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Karpinski, S -- Reynolds, H -- Karpinska, B -- Wingsle, G -- Creissen, G -- Mullineaux, P -- New York, N.Y. -- Science. 1999 Apr 23;284(5414):654-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Forest Genetics and Plant Physiology, Faculty of Forestry, Swedish University of Agricultural Sciences, SE-901 83 Umea, Sweden. stanislaw.karpinski@genfys.slu.se〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10213690" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Arabidopsis/genetics/*metabolism ; Ascorbate Peroxidases ; Catalase/pharmacology ; Chloroplasts/metabolism ; Diuron/pharmacology ; Electron Transport ; *Gene Expression Regulation, Plant ; Hydrogen Peroxide/*metabolism/pharmacology ; *Light ; Oxidation-Reduction ; Oxidative Stress ; Peroxidases/biosynthesis/*genetics ; Photosynthesis ; Photosynthetic Reaction Center Complex Proteins/metabolism ; Photosystem II Protein Complex ; Plant Leaves/*metabolism ; Plants, Genetically Modified ; Recombinant Fusion Proteins/biosynthesis ; Signal Transduction
    Print ISSN: 0036-8075
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  • 82
    Publication Date: 2001-04-03
    Description: The oxygen-18 (18O) content of atmospheric carbon dioxide (CO2) is an important indicator of CO2 uptake on land. It has generally been assumed that during photosynthesis, oxygen in CO2 reaches isotopic equilibrium with oxygen in 18O-enriched water in leaves. We show, however, large differences in the activity of carbonic anhydrase (which catalyzes CO2 hydration and 18O exchange in leaves) among major plant groups that cause variations in the extent of 18O equilibrium (theta(eq)). A clear distinction in theta(eq) between C3 trees and shrubs, and C4 grasses makes atmospheric C18OO a potentially sensitive indicator to changes in C3 and C4 productivity. We estimate a global mean theta(eq) value of approximately 0.8, which reasonably reconciles inconsistencies between 18O budgets of atmospheric O2 (Dole effect) and CO2.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gillon, J -- Yakir, D -- New York, N.Y. -- Science. 2001 Mar 30;291(5513):2584-7. Epub 2001 Mar 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Environmental Science and Energy Research, Weizmann Institute of Science, Rehovot 76100, Israel.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11283366" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Carbon Dioxide/*analysis/*metabolism ; Carbonic Anhydrases/*metabolism ; Climate ; Oxygen/metabolism ; Oxygen Isotopes/*analysis/metabolism ; Photosynthesis ; Plant Leaves/enzymology/metabolism ; Plants/enzymology/*metabolism ; Poaceae/enzymology/metabolism ; Seawater ; Soil ; Water/metabolism
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 83
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-09-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kerr, R A -- New York, N.Y. -- Science. 2001 Aug 31;293(5535):1572-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11533453" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; *Carbon Dioxide ; *Climate ; *Ecosystem ; Fossils ; Guatemala ; Mexico ; Photosynthesis ; Poaceae/*growth & development/metabolism ; Water
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  • 84
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-06-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stephanopoulos, G -- Kelleher, J -- New York, N.Y. -- Science. 2001 Jun 15;292(5524):2024-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. gregstep@mit.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11408647" target="_blank"〉PubMed〈/a〉
    Keywords: Catalysis ; *Cell Physiological Phenomena ; Diatoms/*genetics/*metabolism ; Gene Expression Regulation ; *Genetic Engineering ; Genetic Therapy ; Glucose/metabolism ; Glucose Transporter Type 1 ; Humans ; Metabolic Diseases/therapy ; Models, Biological ; Models, Genetic ; Monosaccharide Transport Proteins/*genetics/metabolism ; Photosynthesis
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  • 85
    Publication Date: 2002-12-21
    Description: The North Atlantic is believed to represent the largest ocean sink for atmospheric carbon dioxide in the Northern Hemisphere, yet little is known about its temporal variability. We report an 18-year time series of upper-ocean inorganic carbon observations from the northwestern subtropical North Atlantic near Bermuda that indicates substantial variability in this sink. We deduce that the carbon variability at this site is largely driven by variations in winter mixed-layer depths and by sea surface temperature anomalies. Because these variations tend to occur in a basinwide coordinated pattern associated with the North Atlantic Oscillation, it is plausible that the entire North Atlantic Ocean may vary in concert, resulting in a variability of the strength of the North Atlantic carbon sink of about +/-0.3 petagrams of carbon per year (1 petagram = 10(15) grams) or nearly +/-50%. This extrapolation is supported by basin-wide estimates from atmospheric carbon dioxide inversions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gruber, Nicolas -- Keeling, Charles D -- Bates, Nicholas R -- New York, N.Y. -- Science. 2002 Dec 20;298(5602):2374-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Geophysics and Planetary Physics and Department of Atmospheric Sciences, University of California, Los Angeles, CA 90095, USA. ngruber@igpp.ucla.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12493911" target="_blank"〉PubMed〈/a〉
    Keywords: Atlantic Ocean ; Atmosphere ; Bermuda ; Carbon/*analysis ; Carbon Dioxide/*analysis/metabolism ; Carbon Isotopes/analysis ; Climate ; Models, Theoretical ; Photosynthesis ; Seasons ; Seawater/*chemistry ; Temperature
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  • 86
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dziak, Robert P -- Johnson, H Paul -- New York, N.Y. -- Science. 2002 May 24;296(5572):1406-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029115" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacterial Physiological Phenomena ; *Disasters ; *Ecosystem ; Geologic Sediments/microbiology ; Hydrostatic Pressure ; Pacific Ocean ; Photosynthesis ; Pressure ; *Seawater ; Temperature ; Time Factors ; Water Movements
    Print ISSN: 0036-8075
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  • 87
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-06-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Morel, Andre -- Antoine, David -- New York, N.Y. -- Science. 2002 Jun 14;296(5575):1980-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratoire d'Oceanographie de Villefranche, Universite Pierre et Marie Curie and CNRS, 06238 Villefranche-sur-mer, France. morel@obs-vlfr.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12065823" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere ; *Biomass ; Carbon Dioxide/metabolism ; Chlorophyll/analysis ; Computer Simulation ; *Ecosystem ; Eukaryota/metabolism/*physiology ; Geography ; Light ; Mathematics ; Models, Biological ; Oceans and Seas ; Oxygen/metabolism ; Photosynthesis ; Phytoplankton/metabolism/*physiology ; Seasons ; *Seawater ; Spacecraft
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 88
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Quay, Paul -- New York, N.Y. -- Science. 2002 Dec 20;298(5602):2344.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Oceanography, University of Washington, Seattle, WA 98195, USA. pdquay@u.washington.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12493904" target="_blank"〉PubMed〈/a〉
    Keywords: Atlantic Ocean ; Atmosphere ; Bermuda ; Carbon/analysis ; Carbon Dioxide/*analysis/metabolism ; *Climate ; Models, Theoretical ; Photosynthesis ; Seasons ; Seawater/*chemistry ; Temperature
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  • 89
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1999-09-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Knoll, A H -- New York, N.Y. -- Science. 1999 Aug 13;285(5430):1025-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Botanical Museum, Harvard University, Cambridge, MA 02138, USA. aknoll@oeb.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10475845" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere ; Australia ; Biological Evolution ; Biomarkers/analysis ; Cyanobacteria/*physiology ; Eukaryotic Cells/*physiology ; Fossils ; Geologic Sediments/*chemistry ; Hydrocarbons/*analysis ; Lipids/*analysis ; Oxygen ; Paleontology ; Photosynthesis ; Sterols/metabolism ; Triterpenes/*analysis
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 90
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2000-09-30
    Description: Two scientific teams, one of which reports its findings on page 1902, have identified large populations of bacteria that convert sunlight hitting the sea surface into energy. These two groups of bacteria, which harness light to move electrons and power cellular processes, likely help bring energy into the food chain. And that could help to explain a puzzle that has confounded researchers trying to understand marine ecosystems: how so many bacteria can survive in the open ocean, where there seems to be relatively little for them to eat.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pennisi, E -- New York, N.Y. -- Science. 2000 Sep 15;289(5486):1869.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11012353" target="_blank"〉PubMed〈/a〉
    Keywords: Aerobiosis ; Bacteria/genetics ; *Bacterial Physiological Phenomena ; Gammaproteobacteria/genetics/*physiology ; Oceans and Seas ; Photosynthesis ; Phytoplankton/genetics/physiology ; Rhodopsin/*physiology ; Rhodopsins, Microbial ; *Water Microbiology
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 91
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-01-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gewolb, Josh -- New York, N.Y. -- Science. 2002 Jan 11;295(5553):258-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11786623" target="_blank"〉PubMed〈/a〉
    Keywords: Cells, Cultured ; Chloroplasts/genetics ; *Genes, Plant ; *Genetic Engineering ; Genome, Plant ; Human Growth Hormone/biosynthesis/chemistry/genetics ; Humans ; Lycopersicon esculentum/genetics ; Photosynthesis ; *Plants, Genetically Modified/metabolism ; Plastids/*genetics ; Protein Folding ; Recombinant Proteins/biosynthesis ; Ribulose-Bisphosphate Carboxylase/genetics/metabolism ; Tobacco/genetics/metabolism ; *Transformation, Genetic
    Print ISSN: 0036-8075
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  • 92
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-08-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brown, Kathryn -- New York, N.Y. -- Science. 2002 Aug 23;297(5585):1267-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12193768" target="_blank"〉PubMed〈/a〉
    Keywords: *Adaptation, Physiological ; Altitude ; Arabidopsis/genetics/physiology ; Carbon Dioxide/metabolism ; *Cold Temperature ; *Genes, Plant ; Gymnosperms/*physiology ; Photosynthesis ; *Plant Physiological Phenomena ; Plant Structures/physiology ; Seasons ; Trees
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  • 93
    Publication Date: 2002-10-19
    Description: Human impacts, including global change, may alter the composition of soil faunal communities, but consequences for ecosystem functioning are poorly understood. We constructed model grassland systems in the Ecotron controlled environment facility and manipulated soil community composition through assemblages of different animal body sizes. Plant community composition, microbial and root biomass, decomposition rate, and mycorrhizal colonization were all markedly affected. However, two key ecosystem processes, aboveground net primary productivity and net ecosystem productivity, were surprisingly resistant to these changes. We hypothesize that positive and negative faunal-mediated effects in soil communities cancel each other out, causing no net ecosystem effects.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bradford, M A -- Jones, T H -- Bardgett, R D -- Black, H I J -- Boag, B -- Bonkowski, M -- Cook, R -- Eggers, T -- Gange, A C -- Grayston, S J -- Kandeler, E -- McCaig, A E -- Newington, J E -- Prosser, J I -- Setala, H -- Staddon, P L -- Tordoff, G M -- Tscherko, D -- Lawton, J H -- New York, N.Y. -- Science. 2002 Oct 18;298(5593):615-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Natural Environment Research Council Centre for Population Biology, Department of Biological Sciences, Imperial College at Silwood Park, Ascot, SL5 7PY, UK. m.a.bradford@ic.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12386334" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacteria/growth & development ; Biomass ; Body Constitution ; Carbon/metabolism ; Ecological Systems, Closed ; *Ecosystem ; Environment ; Fungi/growth & development ; Oxygen Consumption ; Photosynthesis ; Plant Development ; Plant Roots/metabolism ; Poaceae/growth & development ; Population Density ; *Soil ; Soil Microbiology
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  • 94
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Towe, Kenneth M -- New York, N.Y. -- Science. 2002 Feb 22;295(5559):1419.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉230 West Adams Street, Tennille, GA 31089, USA. towe@accucomm.net〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11859156" target="_blank"〉PubMed〈/a〉
    Keywords: *Atmosphere ; Carbon Dioxide/metabolism ; Cyanobacteria/metabolism ; *Earth (Planet) ; Ecosystem ; Euryarchaeota/metabolism ; Evolution, Planetary ; Methane/metabolism ; Oxidation-Reduction ; *Oxygen/metabolism ; Photosynthesis
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 95
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1997-06-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mims, F M 3rd -- Holben, B N -- Eck, T F -- Montgomery, B C -- Grant, W B -- New York, N.Y. -- Science. 1997 Jun 20;276(5320):1774-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/9206832" target="_blank"〉PubMed〈/a〉
    Keywords: Aerosols ; Brazil ; Fires ; Humans ; Infection/epidemiology/*etiology ; Photosynthesis ; Respiratory Tract Diseases/epidemiology/*etiology ; Smoke/*adverse effects ; Sunlight ; *Ultraviolet Rays
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  • 96
    Publication Date: 2010-11-12
    Description: Geochemical data from ancient sedimentary successions provide evidence for the progressive evolution of Earth's atmosphere and oceans. Key stages in increasing oxygenation are postulated for the Palaeoproterozoic era ( approximately 2.3 billion years ago, Gyr ago) and the late Proterozoic eon (about 0.8 Gyr ago), with the latter implicated in the subsequent metazoan evolutionary expansion. In support of this rise in oxygen concentrations, a large database shows a marked change in the bacterially mediated fractionation of seawater sulphate to sulphide of Delta(34)S 〈 25 per thousand before 1 Gyr to 〉/=50 per thousand after 0.64 Gyr. This change in Delta(34)S has been interpreted to represent the evolution from single-step bacterial sulphate reduction to a combination of bacterial sulphate reduction and sulphide oxidation, largely bacterially mediated. This evolution is seen as marking the rise in atmospheric oxygen concentrations and the evolution of non-photosynthetic sulphide-oxidizing bacteria. Here we report Delta(34)S values exceeding 50 per thousand from a terrestrial Mesoproterozoic (1.18 Gyr old) succession in Scotland, a time period that is at present poorly characterized. This level of fractionation implies disproportionation in the sulphur cycle, probably involving sulphide-oxidizing bacteria, that is not evident from Delta(34)S data in the marine record. Disproportionation in both red beds and lacustrine black shales at our study site suggests that the Mesoproterozoic terrestrial environment was sufficiently oxygenated to support a biota that was adapted to an oxygen-rich atmosphere, but had also penetrated into subsurface sediment.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Parnell, John -- Boyce, Adrian J -- Mark, Darren -- Bowden, Stephen -- Spinks, Sam -- England -- Nature. 2010 Nov 11;468(7321):290-3. doi: 10.1038/nature09538.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Geosciences, University of Aberdeen, Aberdeen AB24 3UE, UK. j.parnell@abdn.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21068840" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Bacteria/metabolism ; Geologic Sediments/*chemistry/microbiology ; History, Ancient ; Iron/analysis/chemistry ; Oxidation-Reduction ; Oxygen/analysis/*metabolism ; Photosynthesis ; Scotland ; Seawater/chemistry ; Sulfates/metabolism ; Sulfides/analysis/chemistry/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 97
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    Nature Publishing Group (NPG)
    Publication Date: 2010-12-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vedral, Vlatko -- England -- Nature. 2010 Dec 9;468(7325):769-70. doi: 10.1038/468769a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21150986" target="_blank"〉PubMed〈/a〉
    Keywords: Hot Temperature ; Models, Biological ; Photosynthesis ; *Quantum Theory ; *Thermodynamics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 98
    Publication Date: 2008-01-04
    Description: The carbon balance of terrestrial ecosystems is particularly sensitive to climatic changes in autumn and spring, with spring and autumn temperatures over northern latitudes having risen by about 1.1 degrees C and 0.8 degrees C, respectively, over the past two decades. A simultaneous greening trend has also been observed, characterized by a longer growing season and greater photosynthetic activity. These observations have led to speculation that spring and autumn warming could enhance carbon sequestration and extend the period of net carbon uptake in the future. Here we analyse interannual variations in atmospheric carbon dioxide concentration data and ecosystem carbon dioxide fluxes. We find that atmospheric records from the past 20 years show a trend towards an earlier autumn-to-winter carbon dioxide build-up, suggesting a shorter net carbon uptake period. This trend cannot be explained by changes in atmospheric transport alone and, together with the ecosystem flux data, suggest increasing carbon losses in autumn. We use a process-based terrestrial biosphere model and satellite vegetation greenness index observations to investigate further the observed seasonal response of northern ecosystems to autumnal warming. We find that both photosynthesis and respiration increase during autumn warming, but the increase in respiration is greater. In contrast, warming increases photosynthesis more than respiration in spring. Our simulations and observations indicate that northern terrestrial ecosystems may currently lose carbon dioxide in response to autumn warming, with a sensitivity of about 0.2 PgC degrees C(-1), offsetting 90% of the increased carbon dioxide uptake during spring. If future autumn warming occurs at a faster rate than in spring, the ability of northern ecosystems to sequester carbon may be diminished earlier than previously suggested.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Piao, Shilong -- Ciais, Philippe -- Friedlingstein, Pierre -- Peylin, Philippe -- Reichstein, Markus -- Luyssaert, Sebastiaan -- Margolis, Hank -- Fang, Jingyun -- Barr, Alan -- Chen, Anping -- Grelle, Achim -- Hollinger, David Y -- Laurila, Tuomas -- Lindroth, Anders -- Richardson, Andrew D -- Vesala, Timo -- England -- Nature. 2008 Jan 3;451(7174):49-52. doi: 10.1038/nature06444.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉LSCE, UMR CEA-CNRS, Batiment 709, CE, L'Orme des Merisiers, F-91191 Gif-sur-Yvette, France. slpiao@lsce.ipsl.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18172494" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Biomass ; Carbon Dioxide/analysis/*metabolism ; Cell Respiration ; *Ecosystem ; Fossil Fuels ; Geography ; Greenhouse Effect ; History, 20th Century ; History, 21st Century ; Oceans and Seas ; Photosynthesis ; Plant Transpiration ; Plants/metabolism ; Rain ; *Seasons ; Soil/analysis ; *Temperature ; Water/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 99
    Publication Date: 2008-02-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Keeling, Patrick J -- England -- Nature. 2008 Feb 21;451(7181):896-7. doi: 10.1038/451896a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18288173" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Eukaryota/classification/cytology ; Eukaryotic Cells/*classification/*cytology/metabolism ; Parasites/*classification/*cytology/genetics ; Photosynthesis ; *Phylogeny ; Plasmodium falciparum/classification ; Plastids/*metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 100
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    Nature Publishing Group (NPG)
    Publication Date: 2008-02-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Meyer, Thomas J -- England -- Nature. 2008 Feb 14;451(7180):778-9. doi: 10.1038/451778a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18273008" target="_blank"〉PubMed〈/a〉
    Keywords: Catalysis ; Hydrogen/chemistry ; Oxidation-Reduction ; Oxygen/chemistry ; Photosynthesis ; Water/*chemistry
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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