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  • 1
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    PANGAEA
    In:  Supplement to: Hong, Haizheng; Shen, Rong; Zhang, Futing; Wen, Zuozhu; Chang, Siwei; Lin, Wenfang; Kranz, Sven A; Luo, Ya-Wei; Kao, Shuh-Ji; Morel, Francois M M; Shi, Dalin (2017): The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium. Science, 356(6337), 527-531, https://doi.org/10.1126/science.aal2981
    Publication Date: 2023-04-07
    Description: Acidification of seawater caused by anthropogenic carbon dioxide (CO2) is anticipated to influence the growth of dinitrogen (N2)-fixing phytoplankton, which contribute a large fraction of primary production in the tropical and subtropical ocean. We found that growth and N2-fixation of the ubiquitous cyanobacterium Trichodesmium decreased under acidified conditions, notwithstanding a beneficial effect of high CO2. Acidification resulted in low cytosolic pH and reduced N2-fixation rates despite elevated nitrogenase concentrations. Low cytosolic pH required increased proton pumping across the thylakoid membrane and elevated adenosine triphosphate production. These requirements were not satisfied under field or experimental iron-limiting conditions, which greatly amplified the negative effect of acidification.
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 2
    Publication Date: 2023-04-07
    Keywords: Carbon, inorganic, dissolved, half saturation concentration; Carbon, inorganic, dissolved, half saturation concentration, standard deviation; Growth rate; Growth rate, standard deviation; Iron protein of nitrogenase; Iron protein of nitrogenase, standard deviation; Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; pH; pH, standard deviation; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 44 data points
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  • 3
    Publication Date: 2023-04-07
    Keywords: Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; Time in hours; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 96 data points
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  • 4
    Publication Date: 2023-04-07
    Keywords: Name; Percentage; Station label
    Type: Dataset
    Format: text/tab-separated-values, 36 data points
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  • 5
    Publication Date: 2023-04-07
    Keywords: Gene copies; Gene copies, standard deviation; Nitrogen fixation rate; Nitrogen fixation rate, standard deviation; Station label; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 34 data points
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  • 6
    Publication Date: 2023-04-07
    Keywords: Ammonium; Ethylenediaminetetraacetic acid; Growth rate; Growth rate, standard deviation; Iron; Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 112 data points
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  • 7
    Publication Date: 2023-07-10
    Keywords: Comment; Name; Protein name; Ratio; Ratio, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 189 data points
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  • 8
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    PANGAEA
    In:  Supplement to: Kranz, Sven A; Levitan, Orly; Richter, Klaus-Uwe; Prasil, O; Beran-Frank, Ilana; Rost, Björn (2010): Combined effects of CO2 and light on the N2-fixing cyanobacterium Trichodesmium IMS101: Physiological responses. Plant Physiology, 154, 334-345, https://doi.org/10.1104/pp.110.159145
    Publication Date: 2024-03-15
    Description: Recent studies on the diazotrophic cyanobacterium Trichodesmium erythraeum(IMS101) showed that increasing CO2 partial pressure (pCO2) enhances N2 fixation and growth. Significant uncertainties remain as to the degree of the sensitivity to pCO2, its modification by other environmental factors, and underlying processes causing these responses. To address these questions, we examined the responses ofTrichodesmium IMS101 grown under a matrix of low and high levels of pCO2 (150 and 900 µatm) and irradiance (50 and 200 µmol photons m-2 s-1). Growth rates as well as cellular carbon and nitrogen contents increased with increasing pCO2 and light levels in the cultures. The pCO2-dependent stimulation in organic carbon and nitrogen production was highest under low light. High pCO2 stimulated rates of N2fixation and prolonged the duration, while high light affected maximum rates only. Gross photosynthesis increased with light but did not change with pCO2. HCO3- was identified as the predominant carbon source taken up in all treatments. Inorganic carbon uptake increased with light, but only gross CO2 uptake was enhanced under high pCO2. A comparison between carbon fluxes in vivo and those derived from 13C fractionation indicates high internal carbon cycling, especially in the low-pCO2treatment under high light. Light-dependent oxygen uptake was only detected underlow pCO2 combined with high light or when low-light-acclimated cells were exposed to high light, indicating that the Mehler reaction functions also as a photoprotective mechanism in Trichodesmium. Our data confirm the pronounced pCO2 effect on N2fixation and growth in Trichodesmium and further show a strong modulation of these effects by light intensity. We attribute these responses to changes in the allocation of photosynthetic energy between carbon acquisition and the assimilation of carbon and nitrogen under elevated pCO2. These findings are supported by a complementarystudy looking at photosynthetic fluorescence parameters of photosystem II, photosynthetic unit stoichiometry (photosystem I:photosystem II), and pool sizes of key proteins in carbon and nitrogen acquisition.
    Keywords: Alkalinity, Gran titration (Gran, 1950); Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bacteria; Bicarbonate ion; Bicarbonate uptake in chlorophyll, standard deviation; Bicarbonate uptake rate, per chlorophyll a; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated; Calculated, see reference(s); Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbon, organic, particulate, per cell; Carbon/Nitrogen ratio; Carbon/Nitrogen ratio, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Carbon dioxide uptake, per chlorophyll, standard deviation; Carbon dioxide uptake rate, per chlorophyll a; Chlorophyll a, standard deviation; Chlorophyll a per cell; Comment; Cyanobacteria; Determined by acetylene reduction assay using a gas chromatograph; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fixation of carbon in chlorophyll; Fixation of carbon in chlorophyll, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gross oxygen evolution, per chlorophyll a; Gross oxygen evolution, standard deviation; Growth/Morphology; Growth rate; Growth rate, standard deviation; Laboratory experiment; Laboratory strains; Light; Mass spectrometer ANCA-SL 20-20 Europa Scientific; Nitrogen fixation rate, standard deviation; Nitrogen fixation rate per chlorophyll a; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Oxygen consumption, standard deviation; Oxygen consumption per chlorophyll a; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Particulate organic carbon, production, standard deviation; Particulate organic carbon content per cell, standard deviation; Particulate organic carbon production per cell; Particulate organic nitrogen per cell; Particulate organic nitrogen per cell, standard deviation; Particulate organic nitrogen production, standard deviation; Particulate organic phosphorus per cell; Particulate organic phosphorus per cell, standard deviation; Pelagos; pH; pH, standard deviation; pH meter (Metrohm electrodes); Phytoplankton; Primary production/Photosynthesis; Production of particulate organic nitrogen; Radiation, photosynthetically active; Respiration; Salinity; see reference(s); Single species; Temperature, water; Time in hours; Trichodesmium sp.
    Type: Dataset
    Format: text/tab-separated-values, 1788 data points
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  • 9
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    PANGAEA
    In:  Supplement to: Levitan, Orly; Kranz, Sven A; Spungin, D; Prasil, O; Rost, Björn; Beran-Frank, Ilana (2010): Combined effects of CO2 and light on the N2-fixing cyanobacterium Trichodesmium IMS101: A mechanistic view. Plant Physiology, 154, 346-356, https://doi.org/10.1104/pp.110.159285
    Publication Date: 2024-03-15
    Description: The marine diazotrophic cyanobacterium Trichodesmium responds to elevated atmospheric CO2 partial pressure (pCO2) with higher N2 fixation and growth rates. To unveil the underlying mechanisms, we examined the combined influence of pCO2(150 and 900 µatm) and light (50 and 200 µmol photons m-2 s-1) on TrichodesmiumIMS101. We expand on a complementary study that demonstrated that while elevated pCO2 enhanced N2 fixation and growth, oxygen evolution and carbon fixation increased mainly as a response to high light. Here, we investigated changes in the photosynthetic fluorescence parameters of photosystem II, in ratios of the photosynthetic units (photosystem I:photosystem II), and in the pool sizes of key proteins involved in the fixation of carbon and nitrogen as well as their subsequent assimilation. We show that the combined elevation in pCO2 and light controlled the operation of the CO2-concentrating mechanism and enhanced protein activity without increasing their pool size. Moreover, elevated pCO2 and high light decreased the amounts of several key proteins (NifH, PsbA, and PsaC), while amounts of AtpB and RbcL did not significantly change. Reduced investment in protein biosynthesis, without notably changing photosynthetic fluxes, could free up energy that can be reallocated to increase N2 fixation and growth at elevated pCO2 and light. We suggest that changes in the redox state of the photosynthetic electron transportchain and posttranslational regulation of key proteins mediate the high flexibility in resources and energy allocation in Trichodesmium. This strategy should enableTrichodesmium to flourish in future surface oceans characterized by elevated pCO2, higher temperatures, and high light.
    Keywords: Alkalinity, Gran titration (Gran, 1950); Alkalinity, total; Aragonite saturation state; Bacteria; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CF1 subunit of ATP synthase protein; CF1 subunit of ATP synthase protein, standard deviation; Comment; Cyanobacteria; Effective absorbance cross-section of photosystem II; Effective absorbance cross-section of photosystem II, standard deviation; Electron transport rate of photosystem II, per cell; Electron transport rate of photosystem II, standard deviation; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fluorescence, intrinsic; Fluorescence, intrinsic, standard deviation; Fluorescence, maximum; Fluorescence, maximum, standard deviation; Fluorescence, variable; Fluorescence, variable, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); GlnA subunit of Gln synthetase; GlnA subunit of Gln synthetase, standard deviation; Iron protein of nitrogenase; Iron protein of nitrogenase, standard deviation; Laboratory experiment; Laboratory strains; Light; Maximum photochemical quantum yield of photosystem II; Maximum photochemical quantum yield of photosystem II, standard deviation; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Open photosystem II reaction centers; Open photosystem II reaction centers, standard deviation; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Photosynthetic protein, PsbA, standard deviation; Photosynthetic protein, PsbC; Photosynthetic protein, PsbC, standard deviation; Photosynthetic protein PsbA; Photosynthetic protein Rubisco; Photosynthetic protein Rubisco, standard deviation; Phytoplankton; Primary production/Photosynthesis; Radiation, photosynthetically active; Salinity; see reference(s); Single species; Temperature, water; Time in hours; Trichodesmium sp.
    Type: Dataset
    Format: text/tab-separated-values, 608 data points
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  • 10
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    PANGAEA
    In:  Supplement to: Kranz, Sven A; Wolf-Gladrow, Dieter A; Nehrke, Gernot; Langer, Gerald; Rost, Björn (2010): Calcium carbonate precipitation induced by the growth of the marine cyanobacteria Trichodesmium. Limnology and Oceanography, 55(6), 2563-2569, https://doi.org/10.4319/lo.2010.55.6.2563
    Publication Date: 2024-03-15
    Description: In this laboratory study, we monitored the buildup of biomass and concomitant shift in seawater carbonate chemistry over the course of a Trichodesmium bloom under different phosphorus (P) availability. During exponential growth, dissolved inorganic carbon (DIC) decreased, while pH increased until maximum cell densities were reached. Once P became depleted, DIC decreased even further and total alkalinity (TA) dropped, accompanied by precipitation of aragonite. Under P-replete conditions, DIC increased and TA remained constant in the postbloom phase. A diffusion-reaction model was employed to estimate changes in carbonate chemistry of the diffusive boundary layer. This study demonstrates that Trichodesmium can induce precipitation of aragonite from seawater and further provides possible explanations about underlying mechanisms.
    Keywords: Alkalinity, Gran titration (Gran, 1950); Alkalinity, total; Aragonite saturation state; Auto-analyzer, Technicon Traacs 800; Bacteria; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Comment; Conductivity meter (WTW, Weilheim, Gemany); Cyanobacteria; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Experiment day; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Laboratory strains; Light:Dark cycle; Measured; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphate; Phytoplankton; Radiation, photosynthetically active; Salinity; see reference(s); Single species; Species; Temperature, water; Trichodesmium erythraeum
    Type: Dataset
    Format: text/tab-separated-values, 2017 data points
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