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  • 1
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-04-05
    Description: Analytical chemistry is bound to face growing challenges in the future, especially for the quantification of trace analytes in complex matrices. Although the development of increasingly sensitive and specific instrumental techniques has achieved remarkable results, sample preparation is still a fundamental step, often limiting the whole workflow. In the context spawned by the recent international environmental policies that are responsive to the rapport of human activities with the surrounding environment, chemistry cannot hesitate to give its contribution. Almost pioneeringly, in analytical chemistry, we have been talking for some time about “green analytical chemistry”, its guiding principles, and the development of eco-friendly analytical approaches. However, the new and still open challenge is advance not only in eco-compatibility but mainly in eco-sustainability, rooting the future of analytical chemistry in new perspective aimed at minimizing the environmental impact of the analytical process by placing environmental cost as a priority aim on par with analytical performance. This is the reprint of a Special Issue that includes contributions focused on the progress in analytical chemistry based on the arguments previously raised and discussed, with a particular reference to eco-compatibility and eco-sustainability. The contributions include the development of low environmental impact methods and/or techniques or their applications.
    Keywords: dyes ; fatty acids ; microextraction ; magnetic ionic liquid ; sample preparation ; dispersive liquid–liquid microextraction ; single drop microextraction ; GC ; HPLC ; ionic liquids ; denitrogenation ; extraction ; pyridine ; quinoline ; aniline ; simulated oil ; adsorption ; gum Arabic ; magnetite ; nano-composite ; lead(II) ; mercury removal ; magnetic ; manganese ; cobalt ; iron ; spinel ; crosslinker ; phenolic acids ; vinylimidazole ; anion exchanger ; co-polymer ; solid-phase extraction ; sustainable analytical sample preparation ; indoor air quality ; fragrances ; indoor pollution ; endocrine disruptors ; analytical method ; GC-MS ; musks fragrances ; emerging contaminants ; α-isomethylionone ; halloysite nanotubes ; organosilyl-sulfonated halloysite nanotubes ; solid phase extraction ; pyrrolizidine alkaloids ; honey ; chlorzoxazone ; greener HPTLC ; paracetamol ; simultaneous detection ; validation ; AGREE ; traditional HPTLC ; vitamin D3 ; pulsed electric field ; bioactive compounds ; optimization ; mushrooms ; Agaricus bisporus ; phenyboronic-acid-functionalized ; Fe3O4 magnetic nanoparticles ; ortho-dihydroxy-containing compounds ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry
    Language: English
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  • 2
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: Nowadays, diet-related non-communicable diseases and their complications are one of the most important public health problems worldwide. Food supplements and functional foods are considered food products which contribute to the achievement of optimal nutritional well-being, health status, and quality of life through reducing the risk of diseases and promoting the appropriate function of human organs and systems. Nowadays, the assessment of these functional foods and the study of their implications in nutrition and health are important challenges in societies of developed countries where consumers increasingly demand foods with added value beyond the provision of nutrients and the satisfaction of appetite. In this reprint, the characterization of the nutritional composition and phytochemicals of functional foods and food supplements as well as the evaluation of their potential health benefits in different disorders and diseases through clinical trials or preliminary studies are addressed.
    Keywords: food supplement ; folic acid ; pregnancy ; food safety ; health claims ; nutrition ; Amazonian fruits ; composition ; metabolic effects ; royal jelly ; acetylcholine ; fatty acid ; ophthalmology ; dry eye ; magnesium ; pharmacy ; food supplements ; drugstore ; functional foods ; healthy eating ; credibility ; extrinsic attributes ; conjoint analysis ; Mediterranean diet ; phytonutrients ; dietary recommendations ; healthy diet ; polyphenols ; flavonoids ; carotenoids ; organosulfur ; caffeine ; antidiabetic activity ; antioxidant activity ; inhibition of α-glucosidase ; inhibition of α-amylase ; inhibition of collagenase ; kombucha ; bacteria ; yeast ; metagenome ; metabolome ; tea polyphenols ; antioxidants ; Glossogyne tenuifolia ; exercise ; forelimb grip strength ; lactate ; ammonia ; creatine kinase ; medium-chain triglycerides (MCTs) ; obesity ; energy expenditure ; diet-derived fat ; postprandial resting metabolism ; sedentary ; octanoic acid ; decanoic acid ; creatine ; magnetic resonance spectroscopy ; cost-effectiveness ; brain ; muscle ; healthcare ; anthocyanins ; organosulfur compounds ; tannins ; phenolic acids ; Persea americana ; non-alcoholic liver disease ; liver enzymes ; inflammation ; oxidative stress ; novel foods ; novel ingredients ; extracts ; risk assessment ; dietary supplements ; HPLC ; food authenticity ; neural tube defects ; food ; food analysis ; food ingredients ; infant formula ; kynurenic acid ; (poly)phenol-based supplement ; pharmacokinetics ; urinary excretion ; bioavailability ; inter-individual variability ; non-invasive brain stimulation ; TMS ; a-tDCS ; indicaxanthin ; brain food ; cortical excitability ; homeostatic plasticity ; trans-resveratrol ; regulation ; labels ; nutrition claims ; high-performance thin-layer chromatography ; HPTLC ; glutamine ; intestinal stem cells ; crypt ; proliferation ; burns ; micronutrient ; health claim ; labeling ; European legislation ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences ; thema EDItEUR::J Society and Social Sciences::JB Society and culture: general::JBC Cultural and media studies::JBCC Cultural studies::JBCC4 Cultural studies: food and society
    Language: English
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  • 3
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-26
    Description: This reprint features contributions from the conference DHA41. Dyes in History and Archaeology (DHA) is an annual international conference that focuses on the academic discussion of dyes and organic pigments which have been used in the past. Every year since 1982, this meeting has drawn together conservators; curators; (technical) art historians; craftspeople; artists; independent scholars; and scientists and academics from museums, universities, research centers, and other public or private institutions. Their common interest is to delve deeply into the history, production, application, and properties of organic colorants, as well as their analytical characterization and identification, often in textile objects, but also in other substrates as well as painted surfaces. In the autumn of 2022, the 41st DHA conference was hosted by the Swedish National Heritage Board in Visby. The abstracts are published on the DiVA portal (Digitala Vetenskapliga Arkivet), and many of the presented posters are available for download from the conference program. We are very grateful to the authors of the following 16 articles for submitting their manuscripts and allowing us to put together a publication that presents the fascinating breadth of research into Dyes in History and Archaeology.
    Keywords: 18th century ; consumer goods ; consumer society ; colorant ; dye ; import ; mordant ; Norway ; pigments ; positive feedback loop ; Korean art ; textiles ; dye analysis ; HPLC-DAD-MS/MS ; reflectance spectroscopy ; natural dyes ; early synthetic dyes ; liquid chromatography ; identification ; shirts ; Romania ; 6-bromoindigo ; thermochromic ; dyeing ; wool ; Tyrian purple ; indigo ; woad ; Isatis tinctoria ; woad balls ; couched woad ; woad and indigo vat ; HPLC ; indigoid colorants ; indigo-reducing bacteria ; Etienne Ferrières’s Register ; Antoine Janot ; Paul Gout ; 18th century memoirs on dyeing ; reconstitution of dyeing processes ; syngenite ; yellow lake ; safflower ; organic colourants ; organic colorants ; dyer’s madder ; luteolin ; unknown orange compounds ; HPLC-PDA ; wool textiles ; Medieval period ; Engelbert Jörlin ; Swedish dye plants ; traded dyeing materials ; Carl Linnaeus ; Age of Utility ; indigoids ; indirubinoids ; dibromoindigo ; molluscan purple pigments and dyes ; Muricidae ; Hexaplex trunculus ; Di-Mono Index (DMI) ; ternary diagram ; synthetic dyes ; industrial heritage ; ESI-mass spectrometry ; FTIR spectroscopy ; Iron Age ; goethite ; madder ; Gordion ; King Midas ; Anatolia ; weaving ; dyes ; City Mound ; Phrygia ; khipu ; Wari ; dyestuffs ; heritage science ; multiband imaging ; X-ray fluorescence ; high-performance liquid chromatography ; mass spectrometry ; Flemish tapestries ; hyperspectral imaging ; non-invasive dye analysis ; brazilwood ; yellow dyes ; fading ; dyeing procedure ; old traditional recipes ; natural dyes tradition ; color superstitions ; Greek manuscripts ; Cupressus sempervirens L. ; Helichrysum stoechas (L.) Moench ; Rytiphloea tinctoria (Clemente) C.Agardh ; 19th-century manufacture ; Winsor & Newton ; multi-analytical characterisation ; heritage preservation ; non-invasive analysis ; textile ; mass spectrometry imaging ; n/a ; thema EDItEUR::D Biography, Literature and Literary studies::D Biography, Literature and Literary studies::DN Biography and non-fiction prose ; thema EDItEUR::N History and Archaeology::NK Archaeology
    Language: English
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  • 4
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-02-02
    Description: Ciguatoxins (CTXs), which are responsible for Ciguatera fish poisoning (CFP), are liposoluble toxins produced by microalgae of the genera Gambierdiscus and Fukuyoa. This book presents 18 scientific papers that offer new information and scientific evidence on: (i) CTX occurrence in aquatic environments, with an emphasis on edible aquatic organisms; (ii) analysis methods for the determination of CTXs; (iii) advances in research on CTX-producing organisms; (iv) environmental factors involved in the presence of CTXs; and (v) the assessment of public health risks related to the presence of CTXs, as well as risk management and mitigation strategies.
    Keywords: ciguatoxins ; HRMS ; Q-TOF ; ciguatera poisoning ; C-CTX1 ; fragmentation pathways ; maitotoxins ; Gambierdiscus ; Fukuyoa ; LC-MS/MS ; QToF ; neuroblastoma cell assay ; matrix effect ; ciguatera monitoring ; SPATT passive samplers ; HP20 resin ; CBA-N2a ; WS artificial substrate ; qPCR ; HTS metabarcoding ; ciguatera ; ciguatoxin ; cytotoxicity assay ; ELISA ; HPLC ; immunoassay ; mouse bioassay ; receptor-binding assay ; ciguatoxins (CTXs) ; neuroblastoma cell-based assay (CBA) ; immunosensor ; pacific ciguatoxins ; natural product ; polycyclic ether ; ring-closing metathesis ; Tsuji-Trost allylation ; French Polynesia ; epidemiology ; toxicological analyses ; risk management ; climate change ; Gambierdiscus polynesiensis ; toxin profile ; nitrate ; urea ; culture medium acidification ; CTX1B ; 52-epi-54-deoxyCTX1B ; 54-deoxyCTX1B ; Dictyota ; Caribbean ; dinoflagellate ; benthic algae ; algal toxin ; harmful algal bloom ; the Indian Ocean ; Arabian sea ; Kuwait bay ; Aden Gulf ; Red Sea ; Gulf of Aqaba ; Andaman Sea ; Bay of Bengal ; seafood safety ; foodborne disease ; experimental exposure ; lionfish ; trophic transfer ; toxin accumulation ; Selvagens Islands ; morphology ; phylogeny ; benthic dinoflagellate ; Beibu Gulf ; Chinese waters ; least absolute shrinkage and selection operator ; machine learning ; data science ; medical informatics ; survival analysis ; foodborne diseases ; Ciguatera Fish Poisoning ; digital technologies ; open data ; risk analysis ; marine biotoxins ; Lagodon rhomboides ; pinfish ; bioaccumulation ; depuration ; Caribbean ciguatoxin ; growth dilution ; model ; kinetics ; bic Book Industry Communication::M Medicine ; bic Book Industry Communication::M Medicine::MM Other branches of medicine::MMG Pharmacology::MMGT Medical toxicology
    Language: English
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  • 5
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: This reprint represents a collection of scientific papers belonging to a Special Issue of Antioxidants entitled "Advances in the Astonishing World of Phytochemicals: State-of-the-Art for Antioxidants". Several studies have revealed that plants are a source of a plethora of bioactive compounds, such as phytohormones, glycosides, terpenoids, alkaloids, phenolic compounds, and essential oils, with a strong potential impact in the fields of pharmaceutics and agriculture. These phytochemicals represent a valuable weapon that plants use in self-defense in order to counteract the effects of abiotic stress disturbing the delicate equilibrium between the generation of reactive oxygen species (ROS) and antioxidant defense systems. In recent years, interest in this area of research has been increasing due to the multifaceted properties of natural compounds with antioxidants having anticancer, anti-inflammatory, and antimicrobial activity. Therefore, understanding the underlying mechanism of their action is crucial to establishing their real potential in applied sciences. This reprint focuses on the most recent advances in the study of antioxidant molecular mechanisms activated by phytochemicals, with potential pharmacological and agricultural applications. We thank all the authors for their contribution to the research topic of this reprint and all editorial staff for their valuable support.
    Keywords: antioxidant response element (ARE) ; Nrf2 signaling pathway ; bioactive byproducts ; proanthocyanidins ; oxidative stress mechanisms ; thinned apples ; polyphenols ; anti-oxidant ; anti-inflammatory ; NRF2 ; NF-κB ; proteomics ; antioxidants ; acetylcholinesterase ; 1,1-diphenyl-2-picrylhydrazyl ; HPLC ; medicinal plants ; oxidative stress ; cytotoxicity ; hepatoprotective effects ; HeLa cancer ; inflammation ; mass spectrometry ; oxidation ; prostate cancer ; phytochemical ; phenolic acids ; phenolic mixtures ; interaction effect ; antioxidant activity ; FRAP ; ORAC ; Achillea millefolium ; yarrow extract ; H. pylori ; supercritical anti-solvent fractionation ; anti-inflammatory activity ; antibacterial activity ; A. gangeticus ; protein and dietary fiber ; minerals ; phytochemicals ; HPLC-UV DPPH ; ABTS+ ; PA profiles ; NaCl ; Mexican Gordolobo ; supercritical CO2 extraction ; fatty acids ; biomass valorization ; mountain pepper ; rosella ; strawberry gum ; lemon aspen ; flavonoids ; anthocyanins ; bioavailability ; LC-MS/MS ; microalgae ; exopolysaccharides ; phycoerythrin ; biocompatibility ; wound healing ; Echinacea purpurea extracts ; fractions ; phenols/carboxylic acids ; alkylamides ; human primary macrophages ; pressurized liquid extraction ; seaweeds ; green extraction technique ; bioactive compounds ; functional ingredients ; food packaging ; future trends ; tomato-based products ; metabolic syndrome ; HFD ; antioxidant capacity ; phytonutrients ; yarrow ; fragmentation pathway ; electrospray ionization ; secondary metabolites ; horseradish ; mass spectra ; kaolinite ; phyto-carrier system ; phytocompounds ; methyl gallate ; autophagy ; apoptosis ; p53 ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSB Biochemistry
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  • 6
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: Marine environmental conditions are very distinct in the Yellow Sea, the East China Sea, and the East/Japan Sea. Physico-chemical properties and subsequently biological characteristics are different among the three seas. During the recent decades, dramatic changes in physical structure and vertical distribution of chemical properties were reported in the Yellow Sea, the East China Sea, and the East/Japan Sea. However, we do not know much about the current status of the marine ecosystems in these three distinct seas to date. Since 2018, the integrated ecosystem assessment for ecosystem-based fisheries management have been implemented in the Yellow Sea, the East China Sea, and the East/Japan Sea by the National Institute of Fisheries Science, Korea. This special volume will provide basic information for the current status of the marine ecosystems and an important background for the future monitoring of marine ecosystem responses to ongoing climate changes in the Yellow Sea, the East China Sea, and the East/Japan Sea.
    Keywords: primary production ; phytoplankton ; Yellow Sea ; East/Japan Sea ; South Sea of Korea ; diel vertical migration ; sound scattering layer ; spatial and regional distributions ; Yellow Sea Bottom Cold Water ; sea lions ; Dokdo ; marine mammals ; pinnipeds ; northern East China Sea ; Changjiang diluted water ; phytoplankton community ; chl-a size fraction ; picophytoplankton ; phosphate restriction ; wild seahorse ; H. haema ; feeding habits ; NGS analysis ; Sargassum thunbergii ; morphological variability ; seaweed morphology ; multiple environmental factors ; intertidal zone ; mesopelagic fish ; mitochondrial DNA sequence ; pelagic fish eggs ; spawning ; Trachipterus jacksonensis ; Trachipterus trachypterus ; Ulleung Basin ; East China Sea ; warm currents ; copepods ; indicators ; spatiotemporal distribution ; HPLC ; diatoms ; size fraction ; phytoplankton size classes (PSCs) ; ocean color ; deep neural network (DNN) ; western part of the East Sea ; Kuroshio Current ; East Korea Warm Current ; Pacific decadal oscillation ; food web ; trophic dynamics ; chlorophyll-a size fraction ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
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  • 7
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: This reprint titled “Analysis of Natural Bioactive Compounds in Plant, Food, and Pharmaceutical Products Using Chromatographic Techniques” deals with the separation and analysis of natural bioactive compounds in plants, foods, and pharmaceutical products. A growing tendency toward the discovery and use of natural bioactive compounds that are least harmful, have the fewest side effects, and fit the human body the most naturally has been noticed during the past few decades. As evidenced by the rise in recent studies on the therapeutic properties of plants, this trend has caused a return of healthcare professionals to nature and plants, but with a modern approach that specifically questions how plants help to heal humans and what their exact effects on the human body are. In order to identify and analyze natural bioactive compounds in plant, food, and pharmaceutical products, this reprint attempted to compile latest improvements, advancements, and analytical innovations in chromatographic techniques. In the last few decades, tremendous research on the analysis of natural bioactive compounds in plants, foods, and pharmaceutical products using wide range of chromatography techniques have been performed. This reprint has brought together prominent researchers who have explored a diverse applications range of chromatographic techniques in the extraction, separation, identification, and analysis of natural bioactive compounds.
    Keywords: C. indica ; propolis ; GC-MS ; antibacterial ; bioactive compounds ; chemical composition ; AGREE ; Curcuma longa ; curcumin ; nanoemulsion ; greener HPLC ; validation ; lavender oil ; cytotoxic ; scolicidal ; Musca domestica ; acaricide ; capillary electrophoresis ; fluorescence detection ; honey ; sugars ; breast cancer ; liquid chromatography ; bioanalytical methods ; neratinib ; naringenin ; dosage form ; HPLC ; pterostilbene ; solubility ; stability ; lamb meat ; heterocyclic aromatic amines ; roasted ; spices ; olive leaves ; extraction ; optimization ; ultrasound ; polyphenols ; flavonoids ; antioxidant ; Haberlea rhodopensis ; myconoside ; hispidulin 8-C-(6-O-acetyl-2″-O-syringoyl-β-glucopyranoside) ; GLUT1 transporter ; estrogen receptor and MYST acetyltransferase ; Gymnosperma glutinosum ; cosmetology ; skin care ; antioxidants ; bisabolol ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PN Chemistry ; thema EDItEUR::P Mathematics and Science::PN Chemistry::PNF Analytical chemistry
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  • 8
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-02-02
    Description: This reprint covers a wide range of topics including, but not limited to, new analytical and bioanalytical methods relevant to the separation, identification, and determination of substances in pharmaceutics, pharmacokinetics, nanobiotechnology, clinical chemistry, and related disciplines; methods for the identification of bioactive compounds in functional foods and medicinal plants; applications of chromatography and allied techniques in biomedical sciences.
    Keywords: wild rice ; antioxidant ; macroporous resins ; LC-MS/MS ; phenolics ; procyanidins ; osimertinib ; UPLC-TOF-MS ; rat ; pharmacokinetics ; carbonyl derivatization ; phenylhydrazine ; phenylenediamine ; hydroxylamine ; water analysis ; lipoxidation ; lisdexamfetamine dimesylate ; impurities ; structural elucidation ; forced degradation ; HPLC validation ; chemical constituent profiles of Sinisan ; chinese medicine processing ; chinese medicinal formula compatibility ; Dendropanax morbifera leaf ; xanthine oxidase ; hyperuricemia ; HPLC ; advanced glycation end-products (AGEs) ; Nε-(carboxymethyl) lysine (CML) ; Nε-(carboxyethyl) lysine (CEL) ; antler velvet processing ; UPLC-MS/MS ; Cinnamomum yabunikkei leaf ; elastase ; Citrus junos Seib ex TANAKA ; rhKGF-1 ; rhKGF-2 ; bioactivity ; cell-based bioassay ; method validation ; CYP450 enzyme ; cocktail probe drug ; RT-PCR ; galangin ; affecting factors ; amadori compound ; furosine ; Maillard reaction ; velvet antler processing ; Brazilian green propolis ; phenolic acids ; UPLC-ESI-QTOF-MS ; quantitation ; methodological verification ; Glycyrrhizae Radix extract ; glycyrrhizin ; isoliquiritigenin ; liquiritigenin ; liquiritin ; LC–MS/MS analysis ; desoxo-narchinol A ; Nardostachys jatamansi ; bioavailability ; silybin ; silymarin product ; comparative pharmacokinetics ; ginsenosides ; red ginseng extract ; human ; acanthus ilicifolius herb ; phenylethanoid glycosides ; C.tricuspidata Bureau ; tyrosinase ; dialyzable leukocyte extract ; Transferon® ; complex mixture of peptides ; quality specifications ; biological potency ; development and validation ; Dioscorea nipponica Makino ; steroidal saponin ; HPLC-UV ; UPLC-QTOF/MS ; validation ; osteosarcoma ; apoptosis ; epinastine ; comparison ; SH-1242 ; 2-(3,4-dimethoxyphenyl)-1-(5-methoxy-2,2-dimethyl-2H-chromen-6-yl)ethanone ; HPLC-MS/MS ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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  • 9
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-04-05
    Description: This Special Issue aims to bring together the various aspects of plant cell tissue and organ culture with a special emphasis on the production of phytochemical compounds, considered therapeutically valuable for their antioxidant, antiviral, antibacterial, and anti-inflammatory properties. Secondary metabolites play a key role in the diverse defense mechanisms of the plant organism in response to environmental stimuli, such as climatic fluctuations, pathogenic organisms, predatory herbivores, and competing plants. Therefore, by providing the opportunity for controlled modifications of environmental conditions, in vitro culture is an easy-to-manage experimental system that can be utilized as a source of secondary metabolites for industrial applications, as well as for food, cosmetic, and pharmaceutical purposes. This Special Issue will highlight the modern use of different plant cell tissue and organ culture approaches for successfully producing plant secondary metabolites, particularly those with high economic value.
    Keywords: auxin ; Bidens pilosa ; cytokinin ; callus ; chlorogenic acids ; organogenesis ; phenolics ; secondary metabolites ; shoot culture ; HPLC ; bellidifolin ; osmotic stress ; anthocyanins ; meta-topolin ; micropropagation ; Rheum ; soluble sugars ; sucrose concentration ; Daucus carota ; carotene ; nitrate ; ammonium ; somatic embryogenesis ; Lycium schweinfurthii ; genetic stability ; ISSR-PCR ; RAPD-PCR ; SDS-PAGE ; HPTLC ; DPPH ; ABTS ; roseroot ; in vitro culture ; design of experiments ; nitrogen source ; plant growth regulator ; methyl jasmonate ; phenolic compound ; histochemistry ; shoot proliferation ; polyphenols ; antioxidant activity ; essential oils ; HS-SPME ; GC-MS ; PCA ; HCA ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
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  • 10
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-09
    Description: This reprint is a collection of studies on antimicrobial nanodrugs; it includes four review papers on anti-biofilm therapy, carbon dot-based antimicrobial materials, and supramolecular assemblies for combating antibiotic resistance, as well as six research papers on antibiotic-loaded mesoporous silica nanoparticles, mesostructured spherical nanoparticles, silver nanoparticles, perfluorocarbon nanoemulsion, nano-polyoxometalates, and gold nanoprisms.
    Keywords: plasmonic gold nanoprisms ; antibacterial ; antibiofilm ; GroEL/GroES expression ; pathogenic bacteria ; nano-polyoxometalates ; UV ; FTIR and NMR spectroscopy ; drug designs ; antibacterial activity ; Gram-positive bacteria ; Gram-negative bacteria ; photodynamic therapy ; antibiotic-resistant ; oxygen-delivery ; sensitization ; AgNPs ; antioxidant activity ; flow cytometry ; Gardenia thailandica ; HPLC ; infected wound ; qRT-PCR ; drug delivery ; curcumin ; azeotropic distillation ; self-assembly ; hydrophobic ; mesoporous silica nanospheres ; Salmonella typhimurium ; ciprofloxacin ; drug-loaded nanoparticles ; histopathological examination ; carbon dots ; antimicrobial ; light activation ; photodynamic effect ; reactive oxygen species ; supramolecular assembly ; antibacteria ; antibiotic resistance ; bactericidal ; disinfection ; carbon nanodots ; carbonized polymer dots ; biofilm ; microenvironment ; biofilm-targeting material ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TB Technology: general issues
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  • 11
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-03-07
    Description: Analytical chemistry is bound to face growing challenges in the future, especially for the quantification of trace analytes in complex matrices. Although the development of increasingly sensitive and specific instrumental techniques has achieved remarkable results, sample preparation is still a fundamental step, often limiting the whole workflow. In the context spawned by the recent international environmental policies that are responsive to the rapport of human activities with the surrounding environment, chemistry cannot hesitate to give its contribution. Almost pioneeringly, in analytical chemistry, we have been talking for some time about “green analytical chemistry”, its guiding principles, and the development of eco-friendly analytical approaches. However, the new and still open challenge is advance not only in eco-compatibility but mainly in eco-sustainability, rooting the future of analytical chemistry in new perspective aimed at minimizing the environmental impact of the analytical process by placing environmental cost as a priority aim on par with analytical performance. This is the reprint of a Special Issue that includes contributions focused on the progress in analytical chemistry based on the arguments previously raised and discussed, with a particular reference to eco-compatibility and eco-sustainability. The contributions include the development of low environmental impact methods and/or techniques or their applications.
    Keywords: dyes ; fatty acids ; microextraction ; magnetic ionic liquid ; sample preparation ; dispersive liquid–liquid microextraction ; single drop microextraction ; GC ; HPLC ; ionic liquids ; denitrogenation ; extraction ; pyridine ; quinoline ; aniline ; simulated oil ; adsorption ; gum Arabic ; magnetite ; nano-composite ; lead(II) ; mercury removal ; magnetic ; manganese ; cobalt ; iron ; spinel ; crosslinker ; phenolic acids ; vinylimidazole ; anion exchanger ; co-polymer ; solid-phase extraction ; sustainable analytical sample preparation ; indoor air quality ; fragrances ; indoor pollution ; endocrine disruptors ; analytical method ; GC-MS ; musks fragrances ; emerging contaminants ; α-isomethylionone ; halloysite nanotubes ; organosilyl-sulfonated halloysite nanotubes ; solid phase extraction ; pyrrolizidine alkaloids ; honey ; chlorzoxazone ; greener HPTLC ; paracetamol ; simultaneous detection ; validation ; AGREE ; traditional HPTLC ; vitamin D3 ; pulsed electric field ; bioactive compounds ; optimization ; mushrooms ; Agaricus bisporus ; phenyboronic-acid-functionalized ; Fe3O4 magnetic nanoparticles ; ortho-dihydroxy-containing compounds ; n/a
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  • 12
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: The development of science has led to the emergence of many new modern materials, which also require more advanced tools for their characterization and analysis. NMR and MRI are certainly among such tools, also due to their continuous development, which has made them more powerful, versatile, and sensitive. With these advances, these two techniques have been able to address many open problems associated with the emergence of new materials.This reprint comprises a collection of advanced NMR and MRI techniques and methods, together with a demonstration of their application to the target materials for which they were designed and optimized. These are presented in 25 original, peer-reviewed articles for the Special Issue in the MDPI journal Molecules. The topics covered include MR methods in pharmaceutical research, NMR in cement research, MR methods in wood research, diffusion in materials, characterization of materials by NMR relaxometry, NMR spectroscopy of materials, and MRI of materials.
    Keywords: lamellar 2D zeolites ; pillared zeolites ; mordenite ; ZSM-5 ; CTAB ; NMR ; magnetic resonance imaging contrast agents ; renal clearance ; nanodots ; gadolinium (III)-based composites ; cement hydration ; titanium dioxide TiO2 ; ultrasonic ; calorimetry ; diffusion ; PGSE ; Rouse ; reptation ; hydrophilic matrix tablets ; magnetic resonance ; hydrogel ; drug release ; biorelevant dynamic conditions ; foam flow ; magnetic resonance imaging ; velocity mapping ; pipe flow ; two-phase flow ; hyperpolarization ; flip angle ; plasticizer ; PVC ; identification ; quantification ; non-deuterated solvent ; low-field NMR spectroscopy ; gabapentin ; impurity A ; validation ; limit of the quantitation ; linearity ; accuracy ; repeatability ; precision ; specificity ; robustness ; qNMR ; HPLC ; low field NMR ; Inverse Laplace Transform ; L-Curve regularization ; confined liquid ; relaxometry ; drying process ; solid-state NMR spectroscopy ; porous material ; drug delivery system ; heteronuclei ; magnetic resonance imaging (MRI) ; relaxation times ; beech (Fagus sylvatica) ; wood ; moisture content (MC) ; carthamin-3′potassium salt ; green metallic luster ; fermented safflower petal tablet ; natural soil material ; fast relaxation times ; water content ; water flow ; asphaltenes ; maltenes ; relaxation ; NMR relaxometry ; accelerators ; pore evolution ; partially saturated ; fractal dimension ; electrical conductivity ; anisotropy ; diffusion tensor imaging (DTI) ; conductivity tensor imaging (CTI) ; NMR diffusometry ; zeolites ; heterogeneous catalysis sugar conversion ; biomolecules ; [Pyr13][Tf2N] ; [Pyr16][Tf2N] ; MAS ; CPMG ; 13-interval PGSTE ; VXC72 carbon black ; diffusion-NMR ; Ionic liquids ; polyoxometalates ; nuclear magnetic resonance imaging ; paramagnetic relaxation enhancement ; lanthanides ; relaxivity ; dysprosium ; erbium ; time-domain NMR ; dipolar echoes ; polymerization reaction ; epoxy resin ; autocatalytic reaction ; budesonide ; 22R and 22S epimers ; archaeological wood ; silane ; siloxane ; wood consolidation ; 2D NMR ; chemical reactivity ; solution-state NMR ; wood conservation ; waterlogged wood ; induction period ; accelerator ; Fast Field Cycling ; 3-Tau model ; gradient broadening ; profile ; swelling ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PN Chemistry
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  • 13
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-09-11
    Description: 10th Anniversary of Plants—Recent Advances and Perspectives is a scientific paper collection specially published on the anniversary of Plants. Covering all major areas of plant science, it is a valuable guide through current achievements and future discoveries in this scientific field.
    Keywords: Secale cereale ; Secale montanum ; Secale strictum ; QTL mapping ; molecular marker ; self-incompatibility ; fertility ; seed set ; abiotic stress ; cell homeostasis ; heterologous host synthetic approach ; terpenophenolics ; brown spot ; ACT ; fungus culture filtrate ; mycotoxin ; fruit development ; fruit gauge ; VPD ; Mangifera indica ; cell division ; cell expansion ; ripening ; pulegone ; isomenthone ; menthone ; thymol ; p-cymene ; chemotypes ; seasonal variation ; enantiomeric distribution ; label-free proteomics ; Panax ginseng ; ginsenosides ; cytochrome p450 ; UDP-glycosyltransferase ; MEP pathway ; MVA pathway ; TCA/acetone ; methanol/chloroform ; endophytes ; foliar pathogens ; pathogenicity ; taxonomy ; Thymus vulgaris ; Crithmum maritimum ; leather artifacts ; essential oils ; anti-bacterial activity ; Euphorbia dendroides L. ; aerial parts ; polyphenols ; antioxidant activity ; anti-inflammatory activity ; toxicity ; calcium oxalate crystals ; colleter ; extrafloral nectaries ; resin gland ; bud protection ; plant-environment interaction ; carbohydrate metabolism ; microarray ; crop ; rice ; productivity ; endosperm ; geometry ; morphology ; seed shape ; Vitaceae ; exDNA ; environmental DNA ; DNA sensing ; self-DNA inhibition ; autotoxicity ; plant response ; DAMP ; PAMP ; EDAP ; climate change ; food security ; Mediterranean countries ; sustainable exploitation ; phytogenetic resources ; candidate gene ; quantitative trait locus ; recombinant inbred line ; soybean drought tolerance ; weighted drought coefficient ; antioxidants ; biostimulants ; biotic stress ; GABA ; metabolism ; phytohormones ; reactive oxygen species ; signaling ; tricarboxylic acid cycle ; bacterial functions ; co-presence networks ; metagenomics ; microbial ecology ; plant domestication ; trace element ; plant nutrient ; salinity ; antioxidant defense system ; glyoxalase system ; biochar ; licorice ; soil enzymes ; nutrients ; root system ; ALS ; BCAA ; low oxygen ; flooding ; AIP1 ; Eucommia ulmoides Oliver ; trait variations ; probability grading ; quantitative traits ; planting models ; leaves ; cytokinin ; TD-K ; thidiazuron ; INCYDE ; CPPU ; isopentenyl transferase ; IPT ; cytokinin oxidase/dehydrogenase ; CKX ; wheat ; barley ; yield ; cucumber ; QTL-seq ; SNP markers ; white immature fruit skin color ; ecological costs ; germination models ; herbicide resistance ; hydrotime ; target-site resistance ; hydrogen peroxide ; sodium hypochlorite ; generalized regression neural network ; genetic algorithm ; scarification ; seed dormancy ; plant tissue culture ; foliar descriptors ; leaf area ; models ; vine leaves ; Olea europaea L. ; olive ; genotype by sequencing (GBS) ; single-nucleotide polymorphism (SNP) ; whole-genome sequencing (WGS) ; reference genome ; plastid markers ; DNA barcoding ; ISSR markers ; Egyptian barley ; agro-morphological traits ; cluster analysis ; genetic variation ; biplot ; drought stress ; drying processes ; mathematical model ; plant hydric stress tolerance ; rate of weight loss ; RWLMod ; water evaporation ; photosynthesis ; elevated CO2 ; Rubisco ; electron transport ; light ; diurnal cycle ; sexual propagation ; cold stratification ; in situ ; ex situ ; plant endemism ; Morocco ; biodiversity ; ex-situ conservation ; protocols ; germplasm ; forest berries ; brushing ; lettuce ; chicory ; phytochemicals ; antioxidant capacity ; Ziziphus lotus ; phenolics ; SH-SY5Y cell line ; chromatography ; Koelreuteria paniculata ; dry ethanol extracts ; GC-MS analysis ; chemical compounds ; antitumor and antimicrobial activities ; medicinal plant ; bioactive compounds ; plant-derived secondary metabolites (PDSM) ; cell suspension culture (CSC) ; bioreactor engineering ; apple ; Golden Delicious ; Top Red ; fruitlet thinners ; light reactions ; electron transport rate ; photoprotective mechanism ; state transitions ; PSII repair cycle ; vegetation structure ; environmental variables ; PC-ORD ; plant community assembly ; Himalaya ; allopolyploidy ; interspecific hybridization ; unreduced gametes ; cytological diploidization ; genomic changes ; root length ; root/shoot ratio ; specific root length ; Saragolle Lucana ; seed coating ; heavy metals ; evolution ; hyperaccumulation ; black chokeberry (Aronia melanocarpa) ; anthocyanin stability ; herbs ; co-pigmentation ; color stability ; functional foods/beverages ; biotechnological tools ; ethnomedicine ; in vitro culture ; genetic improvement ; pollen ; tip growth ; calcium ; calcium dependent protein kinase ; Rho Guanine Dissociation Inhibitor ; ROP GTPase ; RhoGDI displacement factor ; polarity ; guar ; gene expression ; qRT-PCR ; RNA-Seq ; salt stress ; salt tolerance ; stress ; transcriptome ; D-tagatose ; IFP48 ; induced resistance ; sweet immunity ; sugar-enhanced defense ; Plasmopara viticola ; Botrytis cinerea ; Vitis vinifera ; human diet ; edible wild plants ; Plantago coronopus L. ; Rumex acetosa L. ; Cichorium intybus L. ; Artemisia dracunculus L. ; phytochemistry ; anti-inflammatory properties ; stem photosynthesis ; hydraulic recovery ; soaking ; X-ray micro-CT ; bark water uptake ; embolism ; genetic resources ; Solanaceae ; Cucumis ; Lactuca ; diversity ; vegetables ; genebank ; essential oil ; iNOS ; interleukin ; lavenders ; NF-κB ; glycosyltransferases ; ER-Golgi trafficking ; mechanism of protein sorting ; COPI and COPII complexes ; sequences and motifs involved in trafficking ; Arabidopsis ; gene regulation ; protein-protein interaction ; transcription factor ; WRI1 ; TCP20 ; lipases ; lipid metabolism ; plant-environment interactions ; reproductive development ; vegetative development ; Urtica dioica ; soilless systems ; cultivated nettle ; stress factors ; functional properties ; preharvest sprouting ; MKK3 ; maternal and paternal expressed genes ; imprinted genes ; polycomb repressive complex 2 ; mRNA processing bodies ; ribonucleic binding proteins ; monosomes ; ethylene ; elicitors ; fruit ripening ; ACC synthase/oxidase ; GC-MS ; polyamines ; Vigna genus ; introgression ; hybridisation ; phylogeny ; de novo domestication ; feralisation ; novel ecosystems ; complex networks ; tree communities ; Lantana camara ; Prosopis juliflora ; ascorbic acid ; genetic diversity ; molecular markers ; aquaculture pond sediment ; recovery ; Triticum aestivum ; chlorophyll fluorescence ; wheat grass juice quality ; UV-B radiation ; olive tree ; metabolomic ; phenolic profile ; lipophilic profile ; ecophysiology ; environment ; arbuscular mycorrhizal symbiosis ; comparative transcriptomics ; Arum-type ; Paris-type ; Solanum lycopersicum ; Rhizophagus irregularis ; Gigaspora margarita ; Camelina sativa ; semi-arid lands ; biofuel feedstock ; biodiesel ; renewable diesel ; crop breeding ; transgenesis ; genome editing ; Xanthomonas euvesicatoria ; host associate factor ; comparative genomics ; Cannabis sativa L. ; chemovars ; secondary metabolites ; trichomes ; residual by-products ; biogeography ; cardioid ; islands ; geometric models ; Mediterranean flora ; Silene ; super-ellipse ; abscisic acid ; aromatic herb ; ascorbate-glutathione cycle ; jasmonic acid ; lipoic acid ; oxidative stress ; salicylic acid ; Salvia officinalis ; drought ; state of stress ; tolerance ; avoidance ; stress survival ; amino acids ; nitrate reductase ; glutamine synthetase ; plants mycorrhized ; dark septate ; Daphne genkwa ; Thymelaeaceae ; flavonoids ; design of experiments ; blooming stages ; germination stimulant ; witchweed ; methyl phenlactonoates (MPs) ; Nijmegen-1 ; weed ; plant development ; vasculature ; leaf traces ; structure ; microtomography ; Euphorbiaceae ; in vitro crop ; gamma radiation ; ionizing radiation ; mutants ; Fumaria scheleicheri Soy. Will. ; isoquinoline alkaloids ; HPLC-DAD ; in vitro anti-cholinesterase ; cytotoxic ; antioxidant ; ABC model ; hop ; transcription factors ; type-II MADS box ; type-I MADS-box ; AFLP ; carpological traits ; genetic structure ; molecular systematics ; plastid phylogeny ; Valerianaceae ; auxins ; embryogenic calli ; HPLC ; IAA ; immunohistochemistry ; deficit irrigation ; grape quality ; phenology ; plant diseases ; bacterium ; symptoms ; molecular classification ; common juniper ; common larch ; Cupressaceae ; Pinaceae ; SPME-GC-MS ; volatile compounds ; herbicidal activity ; weed control ; trait association ; GCV ; genetic variability ; genetic advance ; heritability ; PCV ; Cicer arietinum L. ; gold nanoparticles ; carbon nanotubes ; ATR-FTIR spectroscopy ; machine learning techniques ; principal component analysis ; support vector machine classification ; citrus ; melanose ; Diaporthe citri ; epidemiology ; symptomatology ; Pseudomonas cannabina pv. alisalensis ; resistance-nodulation-cell division transporter ; type-three secretion system ; phytoalexin ; brassinin ; glucosinolate ; cabbage ; flowering ; juvenile traits ; genetic stability ; flow cytometry ; somaclonal variation ; thorniness ; carbohydrates ; protein ; lipids ; fatty acids ; minerals ; plastome ; Plicosepalus acaciae ; Plicosepalus curviflorus ; loranthaceae ; mistletoe ; phylogenetic relationship ; plastome structure ; comparative analysis ; magnetic resonance imaging ; Solanum tuberosum ; multi-exponential transverse relaxation ; water stress ; broccoli ; human nutrition ; improved health ; melatonin ; postharvest ; apricot ; pollen tube ; pollination ; Prunus armeniaca ; S-alleles ; Populus ; hexokinase ; sucrose metabolism ; sugar signaling ; stress and defense ; centres of origin ; crop wild relatives ; crop domestication ; cryopreservation ; conservation ; in vitro storage ; ecosystem restoration ; plant breeding ; acidification ; alkalinisation ; bud burst ; freezing ; Malus domestica ; pH ; Picea abies ; Pinus cembra ; histone modification ; Taraxacum kok-saghyz ; natural rubber ; high light stress ; singlet oxygen ; signalling ; GPX5 ; beta cyclocitral ; acrolein ; glutathione peroxidase ; carbonyl ; transcription ; SLIM1 transcription factor ; sulfur deficiency ; Arabidopsis thaliana ; sulfate transporter ; sulfate assimilation ; stress tolerance ; LRR-RLK receptors ; dodders ; parasitic plants ; proteomics ; virus vertical transmission ; CMV-Fny strain ; pseudorecombinant virus ; chimeric virus ; infection rate ; seed-growth tests ; electron microscopy ; circular dichroism spectroscopy ; viral assembly ; Adiantetea capilli-veneris ; demographic analysis ; ecology ; IUCN ; plant conservation ; phytosociology ; rupicolous habitat ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
    Language: English
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  • 14
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    Unknown
    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-09-11
    Description: 10th Anniversary of Plants—Recent Advances and Perspectives is a scientific paper collection specially published on the anniversary of Plants. Covering all major areas of plant science, it is a valuable guide through current achievements and future discoveries in this scientific field.
    Keywords: Secale cereale ; Secale montanum ; Secale strictum ; QTL mapping ; molecular marker ; self-incompatibility ; fertility ; seed set ; abiotic stress ; cell homeostasis ; heterologous host synthetic approach ; terpenophenolics ; brown spot ; ACT ; fungus culture filtrate ; mycotoxin ; fruit development ; fruit gauge ; VPD ; Mangifera indica ; cell division ; cell expansion ; ripening ; pulegone ; isomenthone ; menthone ; thymol ; p-cymene ; chemotypes ; seasonal variation ; enantiomeric distribution ; label-free proteomics ; Panax ginseng ; ginsenosides ; cytochrome p450 ; UDP-glycosyltransferase ; MEP pathway ; MVA pathway ; TCA/acetone ; methanol/chloroform ; endophytes ; foliar pathogens ; pathogenicity ; taxonomy ; Thymus vulgaris ; Crithmum maritimum ; leather artifacts ; essential oils ; anti-bacterial activity ; Euphorbia dendroides L. ; aerial parts ; polyphenols ; antioxidant activity ; anti-inflammatory activity ; toxicity ; calcium oxalate crystals ; colleter ; extrafloral nectaries ; resin gland ; bud protection ; plant-environment interaction ; carbohydrate metabolism ; microarray ; crop ; rice ; productivity ; endosperm ; geometry ; morphology ; seed shape ; Vitaceae ; exDNA ; environmental DNA ; DNA sensing ; self-DNA inhibition ; autotoxicity ; plant response ; DAMP ; PAMP ; EDAP ; climate change ; food security ; Mediterranean countries ; sustainable exploitation ; phytogenetic resources ; candidate gene ; quantitative trait locus ; recombinant inbred line ; soybean drought tolerance ; weighted drought coefficient ; antioxidants ; biostimulants ; biotic stress ; GABA ; metabolism ; phytohormones ; reactive oxygen species ; signaling ; tricarboxylic acid cycle ; bacterial functions ; co-presence networks ; metagenomics ; microbial ecology ; plant domestication ; trace element ; plant nutrient ; salinity ; antioxidant defense system ; glyoxalase system ; biochar ; licorice ; soil enzymes ; nutrients ; root system ; ALS ; BCAA ; low oxygen ; flooding ; AIP1 ; Eucommia ulmoides Oliver ; trait variations ; probability grading ; quantitative traits ; planting models ; leaves ; cytokinin ; TD-K ; thidiazuron ; INCYDE ; CPPU ; isopentenyl transferase ; IPT ; cytokinin oxidase/dehydrogenase ; CKX ; wheat ; barley ; yield ; cucumber ; QTL-seq ; SNP markers ; white immature fruit skin color ; ecological costs ; germination models ; herbicide resistance ; hydrotime ; target-site resistance ; hydrogen peroxide ; sodium hypochlorite ; generalized regression neural network ; genetic algorithm ; scarification ; seed dormancy ; plant tissue culture ; foliar descriptors ; leaf area ; models ; vine leaves ; Olea europaea L. ; olive ; genotype by sequencing (GBS) ; single-nucleotide polymorphism (SNP) ; whole-genome sequencing (WGS) ; reference genome ; plastid markers ; DNA barcoding ; ISSR markers ; Egyptian barley ; agro-morphological traits ; cluster analysis ; genetic variation ; biplot ; drought stress ; drying processes ; mathematical model ; plant hydric stress tolerance ; rate of weight loss ; RWLMod ; water evaporation ; photosynthesis ; elevated CO2 ; Rubisco ; electron transport ; light ; diurnal cycle ; sexual propagation ; cold stratification ; in situ ; ex situ ; plant endemism ; Morocco ; biodiversity ; ex-situ conservation ; protocols ; germplasm ; forest berries ; brushing ; lettuce ; chicory ; phytochemicals ; antioxidant capacity ; Ziziphus lotus ; phenolics ; SH-SY5Y cell line ; chromatography ; Koelreuteria paniculata ; dry ethanol extracts ; GC-MS analysis ; chemical compounds ; antitumor and antimicrobial activities ; medicinal plant ; bioactive compounds ; plant-derived secondary metabolites (PDSM) ; cell suspension culture (CSC) ; bioreactor engineering ; apple ; Golden Delicious ; Top Red ; fruitlet thinners ; light reactions ; electron transport rate ; photoprotective mechanism ; state transitions ; PSII repair cycle ; vegetation structure ; environmental variables ; PC-ORD ; plant community assembly ; Himalaya ; allopolyploidy ; interspecific hybridization ; unreduced gametes ; cytological diploidization ; genomic changes ; root length ; root/shoot ratio ; specific root length ; Saragolle Lucana ; seed coating ; heavy metals ; evolution ; hyperaccumulation ; black chokeberry (Aronia melanocarpa) ; anthocyanin stability ; herbs ; co-pigmentation ; color stability ; functional foods/beverages ; biotechnological tools ; ethnomedicine ; in vitro culture ; genetic improvement ; pollen ; tip growth ; calcium ; calcium dependent protein kinase ; Rho Guanine Dissociation Inhibitor ; ROP GTPase ; RhoGDI displacement factor ; polarity ; guar ; gene expression ; qRT-PCR ; RNA-Seq ; salt stress ; salt tolerance ; stress ; transcriptome ; D-tagatose ; IFP48 ; induced resistance ; sweet immunity ; sugar-enhanced defense ; Plasmopara viticola ; Botrytis cinerea ; Vitis vinifera ; human diet ; edible wild plants ; Plantago coronopus L. ; Rumex acetosa L. ; Cichorium intybus L. ; Artemisia dracunculus L. ; phytochemistry ; anti-inflammatory properties ; stem photosynthesis ; hydraulic recovery ; soaking ; X-ray micro-CT ; bark water uptake ; embolism ; genetic resources ; Solanaceae ; Cucumis ; Lactuca ; diversity ; vegetables ; genebank ; essential oil ; iNOS ; interleukin ; lavenders ; NF-κB ; glycosyltransferases ; ER-Golgi trafficking ; mechanism of protein sorting ; COPI and COPII complexes ; sequences and motifs involved in trafficking ; Arabidopsis ; gene regulation ; protein-protein interaction ; transcription factor ; WRI1 ; TCP20 ; lipases ; lipid metabolism ; plant-environment interactions ; reproductive development ; vegetative development ; Urtica dioica ; soilless systems ; cultivated nettle ; stress factors ; functional properties ; preharvest sprouting ; MKK3 ; maternal and paternal expressed genes ; imprinted genes ; polycomb repressive complex 2 ; mRNA processing bodies ; ribonucleic binding proteins ; monosomes ; ethylene ; elicitors ; fruit ripening ; ACC synthase/oxidase ; GC-MS ; polyamines ; Vigna genus ; introgression ; hybridisation ; phylogeny ; de novo domestication ; feralisation ; novel ecosystems ; complex networks ; tree communities ; Lantana camara ; Prosopis juliflora ; ascorbic acid ; genetic diversity ; molecular markers ; aquaculture pond sediment ; recovery ; Triticum aestivum ; chlorophyll fluorescence ; wheat grass juice quality ; UV-B radiation ; olive tree ; metabolomic ; phenolic profile ; lipophilic profile ; ecophysiology ; environment ; arbuscular mycorrhizal symbiosis ; comparative transcriptomics ; Arum-type ; Paris-type ; Solanum lycopersicum ; Rhizophagus irregularis ; Gigaspora margarita ; Camelina sativa ; semi-arid lands ; biofuel feedstock ; biodiesel ; renewable diesel ; crop breeding ; transgenesis ; genome editing ; Xanthomonas euvesicatoria ; host associate factor ; comparative genomics ; Cannabis sativa L. ; chemovars ; secondary metabolites ; trichomes ; residual by-products ; biogeography ; cardioid ; islands ; geometric models ; Mediterranean flora ; Silene ; super-ellipse ; abscisic acid ; aromatic herb ; ascorbate-glutathione cycle ; jasmonic acid ; lipoic acid ; oxidative stress ; salicylic acid ; Salvia officinalis ; drought ; state of stress ; tolerance ; avoidance ; stress survival ; amino acids ; nitrate reductase ; glutamine synthetase ; plants mycorrhized ; dark septate ; Daphne genkwa ; Thymelaeaceae ; flavonoids ; design of experiments ; blooming stages ; germination stimulant ; witchweed ; methyl phenlactonoates (MPs) ; Nijmegen-1 ; weed ; plant development ; vasculature ; leaf traces ; structure ; microtomography ; Euphorbiaceae ; in vitro crop ; gamma radiation ; ionizing radiation ; mutants ; Fumaria scheleicheri Soy. Will. ; isoquinoline alkaloids ; HPLC-DAD ; in vitro anti-cholinesterase ; cytotoxic ; antioxidant ; ABC model ; hop ; transcription factors ; type-II MADS box ; type-I MADS-box ; AFLP ; carpological traits ; genetic structure ; molecular systematics ; plastid phylogeny ; Valerianaceae ; auxins ; embryogenic calli ; HPLC ; IAA ; immunohistochemistry ; deficit irrigation ; grape quality ; phenology ; plant diseases ; bacterium ; symptoms ; molecular classification ; common juniper ; common larch ; Cupressaceae ; Pinaceae ; SPME-GC-MS ; volatile compounds ; herbicidal activity ; weed control ; trait association ; GCV ; genetic variability ; genetic advance ; heritability ; PCV ; Cicer arietinum L. ; gold nanoparticles ; carbon nanotubes ; ATR-FTIR spectroscopy ; machine learning techniques ; principal component analysis ; support vector machine classification ; citrus ; melanose ; Diaporthe citri ; epidemiology ; symptomatology ; Pseudomonas cannabina pv. alisalensis ; resistance-nodulation-cell division transporter ; type-three secretion system ; phytoalexin ; brassinin ; glucosinolate ; cabbage ; flowering ; juvenile traits ; genetic stability ; flow cytometry ; somaclonal variation ; thorniness ; carbohydrates ; protein ; lipids ; fatty acids ; minerals ; plastome ; Plicosepalus acaciae ; Plicosepalus curviflorus ; loranthaceae ; mistletoe ; phylogenetic relationship ; plastome structure ; comparative analysis ; magnetic resonance imaging ; Solanum tuberosum ; multi-exponential transverse relaxation ; water stress ; broccoli ; human nutrition ; improved health ; melatonin ; postharvest ; apricot ; pollen tube ; pollination ; Prunus armeniaca ; S-alleles ; Populus ; hexokinase ; sucrose metabolism ; sugar signaling ; stress and defense ; centres of origin ; crop wild relatives ; crop domestication ; cryopreservation ; conservation ; in vitro storage ; ecosystem restoration ; plant breeding ; acidification ; alkalinisation ; bud burst ; freezing ; Malus domestica ; pH ; Picea abies ; Pinus cembra ; histone modification ; Taraxacum kok-saghyz ; natural rubber ; high light stress ; singlet oxygen ; signalling ; GPX5 ; beta cyclocitral ; acrolein ; glutathione peroxidase ; carbonyl ; transcription ; SLIM1 transcription factor ; sulfur deficiency ; Arabidopsis thaliana ; sulfate transporter ; sulfate assimilation ; stress tolerance ; LRR-RLK receptors ; dodders ; parasitic plants ; proteomics ; virus vertical transmission ; CMV-Fny strain ; pseudorecombinant virus ; chimeric virus ; infection rate ; seed-growth tests ; electron microscopy ; circular dichroism spectroscopy ; viral assembly ; Adiantetea capilli-veneris ; demographic analysis ; ecology ; IUCN ; plant conservation ; phytosociology ; rupicolous habitat ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
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  • 15
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: The demand for plant proteins continues to increase due to the growing global population, rising protein deficiency, and their versatile environmental, functional, nutritional, and health benefits. Plant proteins represent a more sustainable source to (partially) supplement costly animal-based foods. Many factors can influence protein functionality and application, such as protein sources, production methods, molecular structures, chemical properties, food formulations and environment, and food processing techniques. The potential applications of plant proteins are diverse. This reprint covers diverse topics related to the characterization, chemistry, interaction, processing, modification, functionality, and/or application of various plant proteins in relation to human food.
    Keywords: green soybean ; ultrasonic extraction ; bioactive compounds ; antioxidant ; dairy product ; fortification ; pod ; Glycine max L. ; quercetin ; almond protein matrix ; brown rice protein matrix ; HPLC ; antioxidant activity ; DSC ; FTIR-ATR ; plant-based foods ; pea protein ; pectin ; thermodynamic incompatibility ; transglutaminase ; plant protein digestibility ; protein isolates ; protein concentrates ; alternative fractionation ; heat treatment ; protein modifications ; in vitro protein digestion ; protein ; meat analog ; texture ; insect protein ; algae protein ; plant protein ; double protein dairy ; process flow ; production ; health effects ; taste ; flavor ; extrusion technology ; textured soy protein ; protein subunit composition ; processing applicability ; plant-based meat analogues ; C-phycocyanin ; high-pressure cell disruption ; extraction method ; Arthrospira platensis ; pulse proteins ; enzymatic hydrolysis ; hydrolysate ; protease ; functional properties ; myoglobin ; plant-based meat alternatives ; HS-SPME-GC-MS ; volatiles ; PCA-analysis ; aroma ; Maillard reaction ; lipid oxidation ; aldehydes ; pyrazines ; textured vegetable protein ; meat analogs ; physicochemical properties ; rehydration capacity ; patty textures ; fava bean ; amyloids ; legumin ; vicilin ; 11S ; 7S ; microscopy ; rheology ; plant-based meat analogs ; protein hydrolysates ; nutritional property ; peptide profile ; bioactive assessment ; texturization ; phase transition ; meat analogues ; pea protein isolate ; chickpea protein isolate ; salt extraction coupled with ultrafiltration ; scaled-up production ; structural characteristics ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences ; thema EDItEUR::J Society and Social Sciences::JB Society and culture: general::JBC Cultural and media studies::JBCC Cultural studies::JBCC4 Cultural studies: food and society
    Language: English
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  • 16
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: Pesticides persist as a prevailing tool in global agriculture for the management of pest populations and to increase crop yields. Their extensive application may lead to the dispersion of pesticide compounds into the environment, subsequently resulting in their persistence as residues within food products. Consequently, there exists the potential for adverse consequences for non-target organisms and human well-being.In response to this concern, diverse legal frameworks and surveillance programs have been instituted on an international scale, with the overarching objective of regulating pesticide usage by setting forth maximum admissible levels for pesticide residues. Consequently, there arises a pressing need to develop highly selective and sensitive multi-residue analytical methodologies, tailored to the quantification of these residues within complex matrices.This Special Issue is devoted to the analysis of pesticide residues within both environmental and food matrices via chromatographic techniques, including the development and validation of analytical methods, along with the completion of comprehensive monitoring studies.
    Keywords: green extraction techniques ; sample preparation ; clean-up ; multiresidue analysis ; environmentally friendly methods ; flupyradifurone ; ginseng ; analytical method ; mass spectrometry ; pesticide residue analysis ; in situ coacervative extraction ; double-solvent supramolecular system ; triazole fungicides ; extraction ; HPLC ; cyclaniliprole ; diamide insecticide ; residue analysis ; DPX ; UHPLC-MS/MS ; pesticide residues ; vegetables ; fruits ; dietary risk exposure ; compound-specific isotope analysis ; pollutant ; agricultural application ; soil ; SPE extraction ; analytical method validation ; chromatography ; food safety ; polar pesticides ; risk assessment ; quality control procedures ; sources of errors of residue analyses ; reproducibility of results ; antifouling biocides ; high-performance liquid chromatography–mass spectrometry (LC-MS) ; ionic liquid-dispersive liquid–liquid micro-extraction (IL-DLLME) ; QuEChERS ; EDIs ; ADI ; HRI ; GC–MS/MS ; LC-MSMS ; pesticides ; toxins ; cereals ; LC-MS/MS ; screening ; validation ; herbal decoction ; traditional Korean medicine ; QuPPe ; proso millet ; determination ; LC–MS/MS ; phase-transfer purification ; carrageenan ; carbamate pesticides ; isoxaflutole ; atrazine ; terminal residues ; dietary risk assessment ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PN Chemistry ; thema EDItEUR::P Mathematics and Science::PN Chemistry::PNF Analytical chemistry
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  • 17
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: In this Special Issue, seven original research articles, two review articles, and one protocol show the impact of female researchers in the field of analytical science. Analytical methods are necessary in dentistry, medicine (both human and veterinary), archaeology, the pharmaceutical industry, food science and technology, and environmental sciences, and these are only a few examples. The multidisciplinary role of chemistry is reflected in all important advances from research groups in technological progress, proving that analytical chemistry is the key issue in scientific progress. In parallel with this outstanding role of analytical chemistry in a variety of scientific fields, we would particularly like to reflect the impact of female researchers in the field of analytical chemistry in this Special Issue to serve as a motivational guide for girls and women pursuing a STEM career. Therefore, we invited well-established scientists to share the results of their research with the scientific community through this Special Issue, which aimed to compile manuscripts written or lead by women analytical chemists.
    Keywords: bisphenol A ; 4-tert-octylphenol ; Artemia franciscana ; HPLC-DAD ; SPME ; pesticide ; gas chromatography ; mass spectrometry ; food ; environmental ; rosuvastatin ; ezetimibe ; glassy carbon electrode ; adsorptive stripping differential pulse voltammetry ; UVFs ; QuEChERS ; in-port derivatization ; waste sludge ; PAH ; biomonitoring ; air pollution ; tree ; HPLC ; antioxidants ; chlorogenic acid ; chemiluminiscence ; CCD camera ; green coffee ; on-site ; heavy metal ions ; modified electrode ; electroanalysis ; nanoparticles ; anthocyanins ; Box–Behnken design ; optimization ; purple corn ; ultrasound-assisted extraction ; antibody conjugates ; biosensing ; bioreporter ; lateral flow devices ; nanoparticles aggregation ; pH ; hydroalcoholic gels ; personal care products ; solid phase microextraction ; tandem mass spectrometry ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PN Chemistry ; thema EDItEUR::P Mathematics and Science::PN Chemistry::PNF Analytical chemistry
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  • 18
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-09-11
    Description: 10th Anniversary of Plants—Recent Advances and Perspectives is a scientific paper collection specially published on the anniversary of Plants. Covering all major areas of plant science, it is a valuable guide through current achievements and future discoveries in this scientific field.
    Keywords: Secale cereale ; Secale montanum ; Secale strictum ; QTL mapping ; molecular marker ; self-incompatibility ; fertility ; seed set ; abiotic stress ; cell homeostasis ; heterologous host synthetic approach ; terpenophenolics ; brown spot ; ACT ; fungus culture filtrate ; mycotoxin ; fruit development ; fruit gauge ; VPD ; Mangifera indica ; cell division ; cell expansion ; ripening ; pulegone ; isomenthone ; menthone ; thymol ; p-cymene ; chemotypes ; seasonal variation ; enantiomeric distribution ; label-free proteomics ; Panax ginseng ; ginsenosides ; cytochrome p450 ; UDP-glycosyltransferase ; MEP pathway ; MVA pathway ; TCA/acetone ; methanol/chloroform ; endophytes ; foliar pathogens ; pathogenicity ; taxonomy ; Thymus vulgaris ; Crithmum maritimum ; leather artifacts ; essential oils ; anti-bacterial activity ; Euphorbia dendroides L. ; aerial parts ; polyphenols ; antioxidant activity ; anti-inflammatory activity ; toxicity ; calcium oxalate crystals ; colleter ; extrafloral nectaries ; resin gland ; bud protection ; plant-environment interaction ; carbohydrate metabolism ; microarray ; crop ; rice ; productivity ; endosperm ; geometry ; morphology ; seed shape ; Vitaceae ; exDNA ; environmental DNA ; DNA sensing ; self-DNA inhibition ; autotoxicity ; plant response ; DAMP ; PAMP ; EDAP ; climate change ; food security ; Mediterranean countries ; sustainable exploitation ; phytogenetic resources ; candidate gene ; quantitative trait locus ; recombinant inbred line ; soybean drought tolerance ; weighted drought coefficient ; antioxidants ; biostimulants ; biotic stress ; GABA ; metabolism ; phytohormones ; reactive oxygen species ; signaling ; tricarboxylic acid cycle ; bacterial functions ; co-presence networks ; metagenomics ; microbial ecology ; plant domestication ; trace element ; plant nutrient ; salinity ; antioxidant defense system ; glyoxalase system ; biochar ; licorice ; soil enzymes ; nutrients ; root system ; ALS ; BCAA ; low oxygen ; flooding ; AIP1 ; Eucommia ulmoides Oliver ; trait variations ; probability grading ; quantitative traits ; planting models ; leaves ; cytokinin ; TD-K ; thidiazuron ; INCYDE ; CPPU ; isopentenyl transferase ; IPT ; cytokinin oxidase/dehydrogenase ; CKX ; wheat ; barley ; yield ; cucumber ; QTL-seq ; SNP markers ; white immature fruit skin color ; ecological costs ; germination models ; herbicide resistance ; hydrotime ; target-site resistance ; hydrogen peroxide ; sodium hypochlorite ; generalized regression neural network ; genetic algorithm ; scarification ; seed dormancy ; plant tissue culture ; foliar descriptors ; leaf area ; models ; vine leaves ; Olea europaea L. ; olive ; genotype by sequencing (GBS) ; single-nucleotide polymorphism (SNP) ; whole-genome sequencing (WGS) ; reference genome ; plastid markers ; DNA barcoding ; ISSR markers ; Egyptian barley ; agro-morphological traits ; cluster analysis ; genetic variation ; biplot ; drought stress ; drying processes ; mathematical model ; plant hydric stress tolerance ; rate of weight loss ; RWLMod ; water evaporation ; photosynthesis ; elevated CO2 ; Rubisco ; electron transport ; light ; diurnal cycle ; sexual propagation ; cold stratification ; in situ ; ex situ ; plant endemism ; Morocco ; biodiversity ; ex-situ conservation ; protocols ; germplasm ; forest berries ; brushing ; lettuce ; chicory ; phytochemicals ; antioxidant capacity ; Ziziphus lotus ; phenolics ; SH-SY5Y cell line ; chromatography ; Koelreuteria paniculata ; dry ethanol extracts ; GC-MS analysis ; chemical compounds ; antitumor and antimicrobial activities ; medicinal plant ; bioactive compounds ; plant-derived secondary metabolites (PDSM) ; cell suspension culture (CSC) ; bioreactor engineering ; apple ; Golden Delicious ; Top Red ; fruitlet thinners ; light reactions ; electron transport rate ; photoprotective mechanism ; state transitions ; PSII repair cycle ; vegetation structure ; environmental variables ; PC-ORD ; plant community assembly ; Himalaya ; allopolyploidy ; interspecific hybridization ; unreduced gametes ; cytological diploidization ; genomic changes ; root length ; root/shoot ratio ; specific root length ; Saragolle Lucana ; seed coating ; heavy metals ; evolution ; hyperaccumulation ; black chokeberry (Aronia melanocarpa) ; anthocyanin stability ; herbs ; co-pigmentation ; color stability ; functional foods/beverages ; biotechnological tools ; ethnomedicine ; in vitro culture ; genetic improvement ; pollen ; tip growth ; calcium ; calcium dependent protein kinase ; Rho Guanine Dissociation Inhibitor ; ROP GTPase ; RhoGDI displacement factor ; polarity ; guar ; gene expression ; qRT-PCR ; RNA-Seq ; salt stress ; salt tolerance ; stress ; transcriptome ; D-tagatose ; IFP48 ; induced resistance ; sweet immunity ; sugar-enhanced defense ; Plasmopara viticola ; Botrytis cinerea ; Vitis vinifera ; human diet ; edible wild plants ; Plantago coronopus L. ; Rumex acetosa L. ; Cichorium intybus L. ; Artemisia dracunculus L. ; phytochemistry ; anti-inflammatory properties ; stem photosynthesis ; hydraulic recovery ; soaking ; X-ray micro-CT ; bark water uptake ; embolism ; genetic resources ; Solanaceae ; Cucumis ; Lactuca ; diversity ; vegetables ; genebank ; essential oil ; iNOS ; interleukin ; lavenders ; NF-κB ; glycosyltransferases ; ER-Golgi trafficking ; mechanism of protein sorting ; COPI and COPII complexes ; sequences and motifs involved in trafficking ; Arabidopsis ; gene regulation ; protein-protein interaction ; transcription factor ; WRI1 ; TCP20 ; lipases ; lipid metabolism ; plant-environment interactions ; reproductive development ; vegetative development ; Urtica dioica ; soilless systems ; cultivated nettle ; stress factors ; functional properties ; preharvest sprouting ; MKK3 ; maternal and paternal expressed genes ; imprinted genes ; polycomb repressive complex 2 ; mRNA processing bodies ; ribonucleic binding proteins ; monosomes ; ethylene ; elicitors ; fruit ripening ; ACC synthase/oxidase ; GC-MS ; polyamines ; Vigna genus ; introgression ; hybridisation ; phylogeny ; de novo domestication ; feralisation ; novel ecosystems ; complex networks ; tree communities ; Lantana camara ; Prosopis juliflora ; ascorbic acid ; genetic diversity ; molecular markers ; aquaculture pond sediment ; recovery ; Triticum aestivum ; chlorophyll fluorescence ; wheat grass juice quality ; UV-B radiation ; olive tree ; metabolomic ; phenolic profile ; lipophilic profile ; ecophysiology ; environment ; arbuscular mycorrhizal symbiosis ; comparative transcriptomics ; Arum-type ; Paris-type ; Solanum lycopersicum ; Rhizophagus irregularis ; Gigaspora margarita ; Camelina sativa ; semi-arid lands ; biofuel feedstock ; biodiesel ; renewable diesel ; crop breeding ; transgenesis ; genome editing ; Xanthomonas euvesicatoria ; host associate factor ; comparative genomics ; Cannabis sativa L. ; chemovars ; secondary metabolites ; trichomes ; residual by-products ; biogeography ; cardioid ; islands ; geometric models ; Mediterranean flora ; Silene ; super-ellipse ; abscisic acid ; aromatic herb ; ascorbate-glutathione cycle ; jasmonic acid ; lipoic acid ; oxidative stress ; salicylic acid ; Salvia officinalis ; drought ; state of stress ; tolerance ; avoidance ; stress survival ; amino acids ; nitrate reductase ; glutamine synthetase ; plants mycorrhized ; dark septate ; Daphne genkwa ; Thymelaeaceae ; flavonoids ; design of experiments ; blooming stages ; germination stimulant ; witchweed ; methyl phenlactonoates (MPs) ; Nijmegen-1 ; weed ; plant development ; vasculature ; leaf traces ; structure ; microtomography ; Euphorbiaceae ; in vitro crop ; gamma radiation ; ionizing radiation ; mutants ; Fumaria scheleicheri Soy. Will. ; isoquinoline alkaloids ; HPLC-DAD ; in vitro anti-cholinesterase ; cytotoxic ; antioxidant ; ABC model ; hop ; transcription factors ; type-II MADS box ; type-I MADS-box ; AFLP ; carpological traits ; genetic structure ; molecular systematics ; plastid phylogeny ; Valerianaceae ; auxins ; embryogenic calli ; HPLC ; IAA ; immunohistochemistry ; deficit irrigation ; grape quality ; phenology ; plant diseases ; bacterium ; symptoms ; molecular classification ; common juniper ; common larch ; Cupressaceae ; Pinaceae ; SPME-GC-MS ; volatile compounds ; herbicidal activity ; weed control ; trait association ; GCV ; genetic variability ; genetic advance ; heritability ; PCV ; Cicer arietinum L. ; gold nanoparticles ; carbon nanotubes ; ATR-FTIR spectroscopy ; machine learning techniques ; principal component analysis ; support vector machine classification ; citrus ; melanose ; Diaporthe citri ; epidemiology ; symptomatology ; Pseudomonas cannabina pv. alisalensis ; resistance-nodulation-cell division transporter ; type-three secretion system ; phytoalexin ; brassinin ; glucosinolate ; cabbage ; flowering ; juvenile traits ; genetic stability ; flow cytometry ; somaclonal variation ; thorniness ; carbohydrates ; protein ; lipids ; fatty acids ; minerals ; plastome ; Plicosepalus acaciae ; Plicosepalus curviflorus ; loranthaceae ; mistletoe ; phylogenetic relationship ; plastome structure ; comparative analysis ; magnetic resonance imaging ; Solanum tuberosum ; multi-exponential transverse relaxation ; water stress ; broccoli ; human nutrition ; improved health ; melatonin ; postharvest ; apricot ; pollen tube ; pollination ; Prunus armeniaca ; S-alleles ; Populus ; hexokinase ; sucrose metabolism ; sugar signaling ; stress and defense ; centres of origin ; crop wild relatives ; crop domestication ; cryopreservation ; conservation ; in vitro storage ; ecosystem restoration ; plant breeding ; acidification ; alkalinisation ; bud burst ; freezing ; Malus domestica ; pH ; Picea abies ; Pinus cembra ; histone modification ; Taraxacum kok-saghyz ; natural rubber ; high light stress ; singlet oxygen ; signalling ; GPX5 ; beta cyclocitral ; acrolein ; glutathione peroxidase ; carbonyl ; transcription ; SLIM1 transcription factor ; sulfur deficiency ; Arabidopsis thaliana ; sulfate transporter ; sulfate assimilation ; stress tolerance ; LRR-RLK receptors ; dodders ; parasitic plants ; proteomics ; virus vertical transmission ; CMV-Fny strain ; pseudorecombinant virus ; chimeric virus ; infection rate ; seed-growth tests ; electron microscopy ; circular dichroism spectroscopy ; viral assembly ; Adiantetea capilli-veneris ; demographic analysis ; ecology ; IUCN ; plant conservation ; phytosociology ; rupicolous habitat ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-03-07
    Description: (Mass spectrometric) non-target screening is a preferably comprehensive and untargeted (predominantly organic molecules detecting) approach combining (robust) analytical measurements with adapted data evaluation concepts, systematic compound identification workflows, and statistical data interpretation. It is well suitable for the identification of new, unexpected and/or unknown organic compounds as well as monitoring ‘molecular fingerprints’ and profiling ‘process-relevant’ molecules via statistical methods. In recent years, 14 articles in various disciplines were published and presented in this Special Issue, whereby it contains 4 peer-reviewed review articles and 10 peer-reviewed research articles dealing with non-target screening strategies and solutions.
    Keywords: Ganoderma lingzhi ; developmental stages ; untargeted metabolomics ; GC/MS ; LC/IT-TOF-MS ; α-glucosidase inhibitory activity ; azoxystrobin ; glutathione ; glutathione conjugate ; tea ; metabolomics ; software ; database ; MS subtraction ; spectral deconvolution ; 2DGC ; volatilomics ; amino acids ; equation ; HPLC ; MS/MS ; NTS techniques (separation, ionization, and detection) ; nucleosides ; open access software ; target gas ; triple quadrupole ; mass spectrometry ; non-target screening ; ultraviolet photodissociation ; higher-energy collisional dissociation ; organic micropollutants ; water quality ; small molecule fragmentation ; cheminformatics ; data analysis ; furan ; 2-methylfuran ; UPLC-qToF ; untargeted analysis ; urinary metabolites ; Ionization ; quantification ; decision making ; NTS strategies ; gas chromatography ion mobility spectroscopy (GC-IMS) ; volatile organic compounds (VOCs) ; non-targeted screening (NTS) using machine learning ; GC–API ; GC–APCI ; GC–APLI ; GC–APPI ; GC–MS ; persistent organic pollutants ; nontargeted screening ; computational mass spectrometry ; emerging contaminants ; high-resolution mass spectrometry ; micropollutant fingerprint ; solid phase extraction ; statistical analysis ; urban waters ; glycomics ; glycoproteomics ; glycosylation ; proteomics ; in silico docking ; network pharmacology ; non-small cell lung cancer ; marker compounds ; non-targeted screening ; pharmaceutical and personal care products ; plant-derived food ; collision cross section ; ion mobility spectrometry ; machine learning ; lipidomics ; review ; analytical ; corticosteroids ; NSAIDs
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-04-05
    Description: (Mass spectrometric) non-target screening is a preferably comprehensive and untargeted (predominantly organic molecules detecting) approach combining (robust) analytical measurements with adapted data evaluation concepts, systematic compound identification workflows, and statistical data interpretation. It is well suitable for the identification of new, unexpected and/or unknown organic compounds as well as monitoring ‘molecular fingerprints’ and profiling ‘process-relevant’ molecules via statistical methods. In recent years, 14 articles in various disciplines were published and presented in this Special Issue, whereby it contains 4 peer-reviewed review articles and 10 peer-reviewed research articles dealing with non-target screening strategies and solutions.
    Keywords: Ganoderma lingzhi ; developmental stages ; untargeted metabolomics ; GC/MS ; LC/IT-TOF-MS ; α-glucosidase inhibitory activity ; azoxystrobin ; glutathione ; glutathione conjugate ; tea ; metabolomics ; software ; database ; MS subtraction ; spectral deconvolution ; 2DGC ; volatilomics ; amino acids ; equation ; HPLC ; MS/MS ; NTS techniques (separation, ionization, and detection) ; nucleosides ; open access software ; target gas ; triple quadrupole ; mass spectrometry ; non-target screening ; ultraviolet photodissociation ; higher-energy collisional dissociation ; organic micropollutants ; water quality ; small molecule fragmentation ; cheminformatics ; data analysis ; furan ; 2-methylfuran ; UPLC-qToF ; untargeted analysis ; urinary metabolites ; Ionization ; quantification ; decision making ; NTS strategies ; gas chromatography ion mobility spectroscopy (GC-IMS) ; volatile organic compounds (VOCs) ; non-targeted screening (NTS) using machine learning ; GC–API ; GC–APCI ; GC–APLI ; GC–APPI ; GC–MS ; persistent organic pollutants ; nontargeted screening ; computational mass spectrometry ; emerging contaminants ; high-resolution mass spectrometry ; micropollutant fingerprint ; solid phase extraction ; statistical analysis ; urban waters ; glycomics ; glycoproteomics ; glycosylation ; proteomics ; in silico docking ; network pharmacology ; non-small cell lung cancer ; marker compounds ; non-targeted screening ; pharmaceutical and personal care products ; plant-derived food ; collision cross section ; ion mobility spectrometry ; machine learning ; lipidomics ; review ; analytical ; corticosteroids ; NSAIDs ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-05-06
    Description: Crop contamination by mycotoxins is a global problem that poses significant economic burdens due to a number of factors, including the food/feed losses that are caused by reduced production rates; the resulting adverse effects on human and animal health and productivity; and the trade losses associated with the costs incurred by inspection, sampling, and analysis before and after shipments. In this scenario, the development of fit-for-purpose analytical methods for regulated and (re)-emerging mycotoxins continues to be a dynamic research area. Some of the current trends in this research area are presented in this book. The collected contributions address either the need for improved methods for mycotoxin detection addressed by new or incoming regulation (ergot alkaloids and Alternaria toxins) as well as methods for the detection of multiple mycotoxins. New approaches to enhance the performance of well-established methodologies, such as the enzyme-linked immunosorbent assay (ELISA) and fluorescence polarization immunoassays (FPIA), are also addressed.
    Keywords: FPIA ; mycotoxin ; OTA ; detection methods ; food safety ; monoclonal antibody (mAb) ; tracer ; HPLC ; trichothecenes ; zearalenone ; Fusarium toxins ; wheat ; liquid chromatography–mass spectrometry ; official control ; collaborative study ; ergot alkaloids ; sum parameter method ; hydrazinolysis ; esterification ; swine feed ; dairy feed ; UHPLC-MS/MS ; aflatoxin B1 ; recombinant AflR gene ; VICAM ; I-ELISA ; peanut ; wheat flour ; milk powder ; LC-MS/MS method ; cereal products ; occurrence ; alternariol ; antibody ; ELISA ; hapten design ; immunoassay ; linker site ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-06-21
    Description: Derivatization is one of the most widely used sample pretreatment techniques in Analytical Chemistry and Chemical Analysis. Reagent-based or reagent-less schemes offer improved detectability of target compounds, modification of the chromatographic properties and/or the stabilization of sensitive compounds until analysis. Either coupled with separation techniques or as a “stand alone” analytical procedure, derivatization offers endless possibilities in all aspects of analytical applications.
    Keywords: tyrosine kinase inhibitors ; chloranilic acid ; charge-transfer reaction ; 96-microwell spectrophotometric assay ; high-throughput pharmaceutical analysis ; biogenic amines ; Lycium barbarum L. ; HPLC ; derivatization ; amino acids ; esterification ; GC–MS ; pentafluoropropionic anhydride ; stability ; toluene ; pigment ; linseed oil ; derivatisation ; quantification ; P/S ratio ; A/P ratio ; ∑D ; GC-MS ; ureide ; BSTFA ; creatine ; creatinine ; silylation ; TMS ; validation ; low-molecular-weight thiols ; human serum albumin ; α-lipoic acid ; blood plasma ; monobromobimane ; reduction ; sodium borohydride ; high-performance liquid chromatography ; fluorescence detection ; taurine ; glutamine ; clams ; high-resolution mass spectrometry ; nerve agents ; methylation ; chemical warfare agents ; sarin ; Novichoks ; 2-naphthalenethiol ; sulforaphane ; HPLC-UV/Vis ; pharmacokinetics ; acetonitrile-related adducts ; acetylenic lipids ; double and triple bond localization ; in-source derivatization ; mass spectrometry ; acetazolamide ; carbonic anhydrase ; enhancement ; inhibition ; pentafluorobenzyl bromide ; chiral metabolomics ; rice water ; d-amino acids ; enantiomer separation ; dimethyl labeling ; homocysteine thiolactone ; homocysteine ; zone fluidics ; o-phthalaldehyde ; fluorosurfactant-modified gold nanoparticles ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-07-06
    Description: It is our pleasure to present this Special Issue of Pharmaceuticals, entitled “Applications of Liquid Chromatography in Analysis of Pharmaceuticals and Natural Products”. Plants produce a wide range of phytochemicals, which are secondary metabolites that confirm their identity and are used for the production of natural pharmaceuticals, among other things. The use of modern chromatographic techniques allows accurate quantitative and qualitative identification of the above-mentioned phytochemicals and their natural products. Liquid chromatography is one of the most efficient and robust specific techniques, due to the merits of convenience and strong separation ability, as well as a wide range of material applications for identification. Liquid chromatography is widely used for the analysis of plants, nutraceuticals, pharmaceuticals, natural product quality control, or quantitative determination of bioactive compounds. The most commonly used for the identification of different plant material and pharmaceuticals are the ultra- and high-performance liquid chromatography with UV-VIS, fluorescence, diode array, and equipped with mass spectrometry or tandem mass spectrometry detection methods. Therefore, for this Special Issue, we published works concerning the latest scientific news, insights, and advances in the field of innovation and applications of liquid chromatography in the analysis of phytochemicals and natural products.
    Keywords: in vitro biological activity ; bioactive compounds ; morphological parts ; medical plant ; Fragaria viridis ; creamy strawberry ; ellagitannins ; HPLC ; mass spectrometry ; fruit ripening ; antioxidant potential ; bisphenol A ; high-performance liquid chromatography ; ionic liquid ; dispersive liquid–liquid microextraction ; extraction kinetic studies ; tenofovir ; creatinine ; HPLC-UV ; hepatitis B virus ; human immunodeficiency virus ; anatoxin-a(s) ; neurotoxins ; cyanobacteria poisoning ; bio-accessibility ; isothiazolinones ; parabens ; cosmetics ; SPE ; UHPLC/DAD ; Gardenia jasminoides Ellis ; anti-diabetic activity ; LC-MS/MS ; GC-MS ; anti-oxidant ; Ficus glumosa ; polyphenols ; HPLC-ESI-MS/MS ; antiproliferative ; antioxidant ; Ayurveda ; Divya-Swasari-Vati ; herbal medicine ; UPLC/QToF MS ; validation ; Allium cepa L. ; Box–Behnken ; flavonoids ; quercetin glycosides ; liquid chromatography ; multiresponse optimization ; onion ; phenolic compounds ; UHPLC ; HPLC-MS/MS ; steroidal hormones ; anti-doping ; bovine blood ; equine blood ; natural products ; plant materials ; dietary supplements ; terpenes ; capillary liquid chromatography ; steroids ; skin permeability ; thin layer chromatography ; calculated physicochemical descriptors ; topical formulation ; anti-cellulite ; cosmetic ; monoterpenoids ; accelerated stability ; F0 concept ; steam sterilization ; sterilization safety ; glucose degradation products ; α-dicarbonyl compounds ; derivatization ; tandem mass spectrometry ; Geobacillus stearothermophilus ; paracetamol ; accuracy profile ; 3D printed ; formulation ; biorelevant media ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences ; bic Book Industry Communication::J Society & social sciences::JF Society & culture: general::JFC Cultural studies::JFCV Food & society
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-31
    Description: This book serves to highlight the pharmacokinetics/drug–drug interactions and mechanistic understanding in relation to the drug-metabolizing enzymes and drug transporters.This book presents a series of drug metabolism and transport mechanisms that govern the pharmacokinetic features of therapeutic drugs as well as natural herbal medicines. It also covers the pharmacokinetic interactions caused by inhibiting or inducing the metabolic or transport activities under disease states or the coadministration of potential inhibitors. It also deals with microenvironmental pharmacokinetic profiles as well as population pharmacokinetics, which gives new insights regarding the pharmacokinetic features with regard to drug metabolism and transporters.
    Keywords: tofacitinib ; dose-dependent pharmacokinetics ; hepatic and intestinal first-pass effect ; rats ; catalposide ; in vitro human metabolism ; UDP-glucuronosyltransferase ; sulfotransferase ; carboxylesterase ; celecoxib ; drug–drug interaction ; fluorescence ; HPLC ; metabolism ; repaglinide ; HSG4112 ; anti-obesity agent ; stereoselectivity ; pharmacokinetics ; compound K ; protopanaxadiol (PPD) ; biliary excretion ; intestinal metabolism ; Carthamus tinctorius extract ; notoginseng total saponins ; comparative pharmacokinetic study ; large volume direct injection ; compatibility mechanism ; mertansine ; human hepatocytes ; cytochrome P450 ; UDP-glucuronosyltransferases ; sodium-glucose cotransporter 2 (SGLT2) inhibitors ; DWP16001 ; kidney distribution ; inhibition mode ; diabetes ; transporter-enzyme interplay ; influx transporter ; efflux transporter ; physiologically based pharmacokinetic model ; cytochrome P450 enzymes ; tiropramide ; healthy Korean subjects ; modeling ; population pharmacokinetic ; quercetin ; breast cancer resistance protein ; inhibitor ; prazosin ; sulfasalazine ; kinetic analysis ; food–drug interactions ; Caco-2 ; EpiIntestinal ; first-pass ; P-gp ; BCRP ; drug transporter ; CYP3A4 ; oral availability ; automatization ; drug absorption ; drug dosing ; head-and-neck cancer ; real-time measurements ; taxanes ; tissue engineering ; UHPLC-MS/MS ; metformin ; verapamil ; drug interaction ; organic cation transporter 2 ; renal excretion ; acute renal failure ; gentamicin ; cisplatin ; hepatic CYP3A1(23) ; creatinine clearance ; renal clearance ; nonrenal clearance ; thema EDItEUR::M Medicine and Nursing ; thema EDItEUR::K Economics, Finance, Business and Management::KN Industry and industrial studies::KND Manufacturing industries
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-11
    Description: Dear colleagues, This Special Issue aims to publish new and innovative research that could demonstrate the therapeutic potential of natural health products, through relevant in vitro and/or in vivo biological activities, to prevent or alleviate degenerative diseases. The interaction of natural health products with human microbiota represents an essential aspect, because it could modulate the microbial pattern and alleviate more of a chronic disease’s effects in the case of type 2 diabetes, cardiovascular dysfunctions, neurodegenerative diseases, and inflammatory colon pathologies. Additionally, you are invited to send research based on the effect of different extracts or functional foods used in degenerative pathologies and interactions with human microbiota. We aim to identify new data on in vitro/in vivo research that could demonstrate the bioavailability of natural compounds and the relationship with antioxidant/antimicrobial capacity. Modulated microbiota aspects are expected to be published based on the interaction with natural compounds, natural sweeteners, or other molecules that influence the colon health status.
    Keywords: in vitro callus ; cell suspension and root cultures ; biologically active substances ; ecdysteroids ; HPLC ; 1H NMR spectra ; Rhaponticum carthamoides ; Chaga ; medicinal fungi ; biomass yield ; mathematical modeling ; response surface methodology ; bioreactor culture ; mycelium ; antioxidant activity ; gamma irradiation ; Fomes fomentarius ; mushroom ; DPPH ; flavonoids ; polyphenols ; urinary infection ; in vitro ; Escherichia coli ; antimicrobial ; yellow onion skins ; extraction ; multifunctional ingredients ; Ficus carica L. ; ultrasonic enzyme co-assisted ; aqueous two-phase extraction ; UPLC-QTOF-MS/MS ; identification ; lactic acid fermentation ; betalain ; carotenoids ; red pepper ; beetroot ; carrot ; drying ; heat treatment ; seaweeds ; bioactive compounds ; food safety ; consumer health ; Cannabis sativa L. ; cannabinoids ; hemp oil ; UHPLC–PDA ; validation ; Cnidoscolus aconitifolius ; inflammation ; croton oil ; HL-60 ; phenols ; differentiation ; apoptosis ; transcriptome ; natural products ; bacteria ; downstream processing ; antibiotics ; isolation ; secondary metabolites ; pharmacognosy ; bioprospecting ; U. lactuca ; non-toxic solvents ; phenolics ; uropathogenic ; herbal medicines ; plant extract ; bioactive molecules ; n/a ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TB Technology: general issues ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering::TCB Biotechnology
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-07-06
    Description: The analysis of food and food by-products is a particularly important topic dealing with the development and application of various analytical procedures and methods determining the properties and safety of food and food constituents. It is an important tool not only for defining food quality but also for supporting the investigation of new food products and technologies. The continuous development of methodology and access to modern research equipment enable detailed research on the composition, structure, physicochemical properties, thermal characteristics, and stability of food products and, recently, also byproducts of the food industry, which are potentially a source of bioactive compounds and currently present little commercial value and are mostly disposed of as an industrial waste. It is imperative to identify the properties and potential applications of food by-products, which would fit in with current trends in circular ecology. Taking the aforementioned reasons into account, it is important to present procedures and instrumental analytical techniques and methods commonly used to analyze food and food processing byproducts and to discuss their application in food research to detect and characterize specific food components of significance to food science and technology, such as lipids, proteins, and carbohydrates.
    Keywords: lycopene ; optical system ; colorimeter ; spectroscopy ; images ; HPLC ; fruit gel ; aeration ; drying ; sorption isotherms ; glass transition ; maltodextrin ; raw meat cat diet ; essential fatty acids ; fatty acids profile ; fatty acids distribution ; oxidative stability ; traditional sausages ; chemical composition ; near infrared reflectance (NIR) spectroscopy ; calibration ; validation ; Yarrowia lipolytica ; microbial lipids ; phosphorus limitation ; nitrogen limitation ; cider ; dry hopping ; gas chromatography ; mass spectrometry ; solid phase microextraction ; volatiles ; clove buds ; juniper berries ; lemon peels ; fatty acid composition ; GC–MS ; GC–TOF–MS ; cream ; fermentation ; glass transition temperature ; freeze-dried strawberries ; milk and dark chocolate ; MDSC ; berry fruit by-products ; alternative extraction methods ; waste management ; green extraction ; PEF-assisted extraction ; ultrasound-assisted extraction ; edible functional oils ; food identity ; phytochemicals’ profile ; gas- and liquid chromatography ; chemometrics ; metabolomics ; gamma-decalactone ; separation ; solvent extraction ; hydrodistillation ; adsorption ; Amberlite XAD-4 ; amaranth oil ; quinoa oil ; DSC ; Rancimat ; pork loin ; sous vide ; physicochemical properties ; microbiological quality ; sensory quality ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-08-12
    Description: This Special Issue contributes to filling knowledge gaps regarding NUS in horticultural and ornamental systems, as well as in landscapes, by collecting original research papers dealing with the relevance of NUS to the following topics: biodiversity and conservation; genetics and breeding; characterization, propagation, and ecophysiology; cultivation techniques and systems; landscape protection and restoration; product and process innovations; biochemistry and composition; and postharvest factors affecting their end-use quality.
    Keywords: Pinus koraiensis ; EST-SSRs ; genetic diversity ; population structure ; population differentiation ; gene flow ; nutraceuticals ; breeding ; Solanum aethiopicum ; neglected and underutilized ; phytochemicals ; dune spinach ; NaCl ; functional food ; salt tolerance ; underexploited vegetable ; dandelion ; common brighteyes ; wild edible greens ; chemical composition ; nutrient contents ; soilless cultivation ; minerals content ; saline conditions ; NUS ; sustainable food supply ; nutritional security ; Apulia Region ; Portulaca olearacea ; Borago officinalis ; yield ; antioxidants ; phenolics ; flavonoids ; Ginkgo biloba ; trace elements ; starch ; terpene trilactones ; ginkgotoxin ; ginkgolik acid ; antimicrobial ; wood apple ; fatty acid profile ; tocopherol ; nutritional ; GC-MS ; HPLC ; MaxEnt ; ecological niche modeling (ENM) ; endangered species ; Cyatheaceae ; environmental factors ; plant-based biostimulants ; foliar application ; bottle gourd landraces ; greenhouse cultivation ; crop production ; NUE ; fatty acids ; free sugars ; organic acids ; UPLC ; salinity ; microbial growth ; sensory quality ; floating system ; ready-to-eat ; root knot nematode ; Punica granatum ; bioagents ; nematicides ; neemcake ; climate resilient ; arid zone fruits ; adaptation ; nutritional quality ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences ; bic Book Industry Communication::T Technology, engineering, agriculture
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-12-06
    Description: Sample preparation is and will always be the most important step in chemical analysis. Numerous techniques, methods, methodologies, and approaches are published in the literature offering a wide range of analytical tools to the lab practitioner. Analytical scientists all over the world are trying to develop protocols for a plethora of analytes in various sample matrices. In the last decade, sample pre-treatment advances have followed green chemistry and green analytical chemistry demands, focusing on miniaturization and automation, using the least possible amount of organic solvents. The question is how far we have been till now, and what the future perspectives are. To answer this question, analytical chemists were invited to share their experience in the field and report on the recent advances in sample-preparation approaches. The outcome of our invitation was eleven excellent manuscripts, including four review articles and seven original research articles in the first edition of the Special Issue “Sample Preparation-Quo Vadis: Current Status of Sample Preparation Approaches”.The second edition is a collection of ten significant contributions to the field of sample preparation. It includes two highly interesting and comprehensive review articles and eight innovative research articles.
    Keywords: sample preparation ; matrix solid-phase dispersion ; salting-out ; homogenous liquid-liquid extraction ; bisphenol ; bee pollen ; tricyclic antidepressants ; urine samples ; bar adsorptive microextraction (BAμE) ; novel sorbent phases ; biomaterials waste ; flotation sampling technology ; GC-MS ; amino acids ; chocolate ; derivatization ; HPLC ; fluorescence ; automation ; flow injection ; inductively coupled plasma ; sol-gel ; solid-phase extraction ; metals ; molecular imprinted polymer ; interaction mechanism ; template-monomer interaction ; MIP-template interaction ; microwave-assisted extraction ; tocopherols ; phenolics ; flavonoids ; authenticity ; HPLC-UV ; bismuth oxide ; API particle size ; API morphology ; film-coated tablets ; Raman spectroscopy ; ImageJ ; tablet disintegration ; green extraction techniques ; microextraction techniques ; biological samples ; food samples ; environmental samples ; carbaryl ; cassia bark (Senna siamea Lam.) ; smartphone-based digital image analysis ; 1-naphthol ; peroxidase enzyme ; raman spectroscopy ; carriers ; sample holders ; gold layer ; cuvette ; ethanol ; urine ; volatile compounds ; biological fluids ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: A Special Issue of the international journal Sustainability under the section Sustainability of Culture & Heritage has been made, entitled Natural Sciences in Archaeology and Cultural Heritage. The bridge between science/technology and the humanities (archaeology, anthropology, history of art, and cultural heritage) has formed a well-established interdisciplinary subject with several sub-disciplines; it is growing exponentially, spurred by the fast development of technology in other fields (space exploration, medical, military, and industrial applications). On the other hand, art and culture struggle to survive due to neglect, lack of funding, or the dangers of events such as natural disasters and war. This volume strengthens and exerts the documentation of the sustainability of the issue that arises from the outcome of resulting research and the application of such a duality link. The sustainable dimension emerges from society, education, and economics through the impact of cultural growth, all of which produce a balanced society, in which prosperity, harmony, and development are merged at a sustainable local/regional/national/social level. A wide range of subjects linking the applied natural sciences with archaeology and the cultural heritage of innovative research and applications are presented in this volume.
    Keywords: organic residue analysis (ORA) ; archaeochemistry ; phytochemistry ; ethnobotany ; ethnohistory ; paleoenvironment ; paleoecology ; legacy artifacts ; perfumed oils ; Minoan Crete ; OpenARCHEM ; Chinese Pyramids ; Han Dynasty ; Feng Shui ; protection of ancient landscapes ; Geoarchaeology ; city overlap city ; the Yellow River floodplain ; Kaifeng city ; cultural heritage ; augmented reality ; mobile phones ; evaluation ; archaeological sciences ; buried antiquities ; prospection ; documentation ; digitalization ; management ; UNESCO ; cultural tourism ; economic values ; new technologies ; information ; cultural astronomy ; archaeoastronomy ; field techniques ; Bohí Romanesque churches ; Canary Islands ; landscape archaeology ; elemental analysis ; archaeological chemistry ; organic residue analysis ; Andean Middle Horizon ; 3D model ; virtual heritage ; ecosystem ; infrastructure ; Holy Sepulchre ; Church of Resurrection ; petrography ; isotopic analysis ; Proconnesos ; monument ; history ; archaeometry ; purple ; shellfish ; mollusk ; Tyrian purple ; indigo ; pigment ; dye ; HPLC ; hydroxyapatite ; diammonium hydrogen phosphate ; pigment alteration ; wall painting consolidation ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-07-06
    Description: There is an increased need to design circular economy models to make our food system more sustainable. This book brings together a review, a short communication, and several research articles showcasing a range of circular economy initiatives: some that valorise and characterise by-products using different technologies, others that apply by-products to new upcycled food products, and finishing with one article investigating consumer attitudes towards a food that comes from a circular economy initiative. This book highlights the diversity of expertise needed to valorise by-products from farm to fork and presents different by-products, technologies, and potential applications.
    Keywords: meat byproducts ; porcine heart ; protein extraction ; response surface methodology ; technofunctional properties ; bioethanol co-products ; post-fermentation corn oil ; distiller’s corn oil ; thin stillage ; by-products ; valorization ; bioactive molecules ; phytosterols ; squalene ; tocopherols ; tocotrienols ; tocols ; carotenoids ; rice bran ; stabilization ; antioxidants ; functional properties ; bioactives ; anti-nutritional components ; solid state fermentation ; antioxidant activity ; bioactive compounds ; Aspergillus oryzae ; HPLC ; total phenolic content ; reducing power assay ; biorefinery ; olive-derived biomass ; ultrasound-assisted extraction ; animal welfare ; circular economy ; consumer acceptance ; consumer attitudes ; food waste ; insects as feed ; Nvivo ; poultry ; qualitative study ; sustainability ; muffins ; by-product ; valorisation ; sunflower flour ; amino acid profile ; mineral content ; fibre content ; FRAP ; PCL assay ; functional ovine cheese ; grape pomace powder ; Lactococcus lactis ; physicochemical properties ; polyphenols ; volatile organic compounds ; antioxidant properties ; defatted seeds of Oenothera biennis ; α-glucosidase ; aldose reductase ; antioxidant ; nutrients ; purple corn cob ; anthocyanins ; Arabic gum ; accelerated stress protocol ; forced degradation ; moisture-modified Arrhenius equation ; mango by-products ; fortification ; value addition ; in vitro digestion ; maize porridge ; vegetable pomace ; dairy beverage ; fluidized bed ; heat-sensitive compounds ; functional food ; palatability ; Canis familiaris ; DIY formula ; Prunus dulcis ; almond skins ; almond hulls ; almond shells ; almond blanch water ; bioactivities ; agri-waste management ; cava lees ; phenolic extract ; food by-product ; lactic acid bacteria ; fermented sausages ; Salmonella spp. ; Listeria monocytogenes ; revalorization ; waste utilisation ; date seed powder ; cookies ; sensory analysis ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
    Language: English
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: There is a worldwide growing interest toward the nutritional and antioxidant values of fruits and vegetables, especially because phytochemicals in natural products are perceived as necessary for a healthier diet due to their high antioxidant capacity. This book provides readers with novel insights into how quality, in terms of nutritional and antioxidant values, is influenced and/or controlled genetically, environmentally, and by different postharvest treatments. This book is a collection of important pieces of research covering different aspects related to the nutritional and antioxidant values of some horticultural species, including edible flowers, Italian green tea, and stinging nettle, along with potato and sweet potato. Today’s food products are all the more appreciated for their content of phytonutriceuticals, and, therefore, horticulture has to turn to the supply of products with a variety of valuable metabolites and aromas. It is the task of researchers to study these compounds and enable the enhancement of horticultural products.
    Keywords: α-solanine ; α-chaconine ; color variables ; chlorophyll contents ; color index ; stinging nettle ; freeze-drying ; oven-drying ; heat pump drying ; total phenolic compounds ; antioxidant activity ; Ipomoea batatas ; nutrients requirement ; β-carotene ; vitamin A ; minerals ; carotenoids ; phenolic compounds ; VOCs ; aroma ; air-drying ; preservation ; tea ; Camellia sinensis ; DPPH ; ABTS ; FRAP ; HPLC ; anthocyanins ; flavor ; polyphenols ; sensory analysis ; postharvest ; shelf life ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: The archaeology, Egyptology, and archaeological sciences of the SE Mediterranean are ongoing research fields. This book highlights eleven articles that discuss new and contemporary new issues that are diverse in nature and that are linked to the interdisciplinary nature of the presented subjects and that honor the contributions that Prof.I.Liritzis’ has made to the field in advance of his retirement. The content of these articles ranges from Egyptian colonialism and Greek–Egyptian contact to archaeoastronomy, the conservation and restoration science of organic and inorganic material culture, fieldwork in Egypt and Jordan, ancient construction technology, the identification of ancient dyes, and multiscientific techniques to study ancient Egyptian materials to Coptic art.
    Keywords: archaeoastronomy ; Temple of Jupiter Heliopolitanus ; Roman temples of Lebanon ; graffiti ; epigraphy ; desert travel ; Kharga Oasis ; ancient Egypt ; masonry walls ; construction materials ; architectural heritage ; microanalysis ; mineralogical investigation ; nano zinc oxide ; Ceratophyllum demersum ; 4-chloro-m-cresol ; bacteria ; fungi ; historic constructions ; three-leaf masonry walls ; field survey ; construction history ; textile ; Egypt ; Coptic ; dye ; madder ; indigo ; woad ; weld ; HPLC ; optical profilometry ; surface characterization ; chromatic white light ; Antikythera Mechanism ; Gears ; Ancient Astronomy ; Ancient Technology ; Egyptian Calendar ; archaeology ; New Kingdom ; Ramesses ; imperialism ; border ; frontier ; boundary ; Kadesh ; Palestine ; Syria ; Israel ; Mediterranean ; history ; heritage ; culture ; coptic ; masonry ; clay minerals ; microorganisms ; XRD ; XRF ; Wadi El-Natrun ; crucifixion ; apostles ; inscription ; silk ; embroidery ; Greek ; monastery ; conservation ; Ramesside ; dyes ; mummy ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
    Language: English
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: Although air pollution is usually linked with human activities, natural processes may also lead to major concentrations of hazardous substances in the low atmosphere. Pollutant levels may be reduced when emissions can be controlled. However, the impact of meteorological variables on the concentrations measured may be noticeable, and these variables cannot be controlled. This book is devoted to the influence of meteorological processes on the pollutant concentrations recorded in the low atmosphere. Measurements, cycles, statistical procedures, as well as specific variables such as the synoptic pattern, temperature inversion, or the calculation of back-trajectories, are considered in the studies included in this book to highlight the relationship between air pollution and meteorological variables. In addition, the state of the art of this subject following meteorological scales, from micro to macro-scale, is presented. Consequently, this book focuses on applied science and seeks to further current knowledge of what contribution meteorological processes make to the concentrations measured in order to achieve greater control over air pollution.
    Keywords: air pollution ; synoptic situation pattern ; meteorological variables ; threshold values ; air quality forecast ; modelling ; pollution episodes ; national holiday ; COVID-19 ; particulate matter ; natural ventilation ; indoor air quality ; regional variation ; nitrogen dioxide ; in situ urban concentrations ; meteorological measurements ; NO2 variation ; partial correlation ; gross alpha activity ; northern Iberian Peninsula ; radon ; airflow patterns ; surface winds ; atmospheric boundary layer ; weather types ; Gaussian plume model ; low-level jet ; recirculation ; microscale ; macroscale ; mesoscale ; source apportionment ; cluster analysis ; health risks ; residential wood burning ; sustainable urban development ; urban haze ; temperature inversion ; Obukhov length ; HYSPLIT ; biomass burning ; cold surge, emission ; BaP ; HPLC ; carcinogenic ; diagnostic ratio ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
    Language: English
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: A compilation of 12 original research articles and a review on the development of instrumental and immunoanalytical methods for mycotoxins; on the enhancement of sample preparation and selection to improve method applicability; and on practical applications of analytical methods in laboratory fungal cultures, cereal and feed samples, surface water (as a novel matrix of mycotoxins as emerging surface water contaminants), and during mycotoxin decontamination by bacteria. Target analyte mycotoxins include aflatoxins, deoxynivalenol, diacetoxyscirpenol, fumonisins, fusarenone-X, HT-2 toxins, nivalenol, ochratoxins, sterigmatocystin, T-2 toxin, and zearalenone.
    Keywords: aflatoxins ; laboratory culture ; extraction ; HPLC ; recovery ; detection limits ; frequency mixing technology ; immunofiltration ; magnetic beads ; mycotoxin ; type B trichothecenes ; modified mycotoxins ; isomer separation ; method validation ; ochratoxin A ; fluorescence ; G-quadruplex ; biosensor ; computation ; simulation ; mycotoxins ; feed ; modified QuEChERS ; LC-MS/MS ; zearalenone ; immunochromatographic assay ; semi-quantification ; quantification ; aflatoxin B1 ; sterigmatocystin ; lactobacilli ; mycotoxin binding ; detoxification ; lactic acid bacteria ; colorimetric detection ; rapid tests ; ELISA ; lateral flow assays ; microfluidics ; nano-materials ; food safety ; commercialization ; immunosensor ; optical waveguide lightmode spectroscopy ; label-free detection ; planar waveguide sensor ; polarisation interferometer ; limit of detection ; competitive immunoassay ; fluorescence detection ; high-performance liquid chromatography ; total internal reflection ellipsometry ; aflatoxin ; chicken feed ; representative sampling ; improved aflatoxin test procedure ; validation ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
    Language: English
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-28
    Description: As plant-based foods, both vegetables and fruits have been clearly associated with the presence of high amounts of bioactive compounds, and have been demonstrated as having a central role in the prevention of diseases. Many scientists of different research fields have lavished great effort both to characterize the bioactive compounds’ compositions and to deepen understanding regarding the mechanisms of action through which fruits and vegetables exert their health-promoting and/or disease-preventing properties. In this book, studies on the bioactive compounds’ composition of the main fruit and vegetable species, on their health effects as fresh-consumed, transformed products or applied in in vitro models, and on their mechanisms of actions against human pathologies are presented.
    Keywords: ABTS ; bioactive compounds ; DPPH ; flavonoids ; genetic distance ; genotypic and phenotypic correlation ; nutraceutical value ; phenolics ; UPGMA ; apricot ; methyl jasmonate ; salicylic acid ; antioxidant property ; enzyme activity ; postharvest quality ; elderberry ; reishi ; respiratory tract infections ; common cold ; influenza-like illness ; respiratory infection symptoms ; randomized controlled trial ; agrobiodiversity ; antioxidant activity ; health benefits ; medicinal properties ; Mediterranean diet ; market food trends ; sustainability ; wild edible greens ; organic farming ; conventional farming ; trace elements ; heavy metals ; risk assessment ; anthocyanins ; Fragaria × ananassa ; latitude ; temperature ; global radiation ; cultivar × environmental interaction ; phytochemical compounds ; antioxidant capacity ; Brassica spp. ; vegetables ; cultivation techniques ; glucosinolates ; apple ; royal gala ; pink lady ; red delicious ; smitten ; fuji ; phenolic compounds ; LC-ESI-QTOF-MS/MS ; HPLC ; garlic ; Allium sativum ; thiosulfinate ; allicin ; sepsis ; immunomodulation ; interleukins ; rats ; hydroxytyrosol ; olive extract ; olive polyphenols ; grape extract ; oleuropein ; F2-isoprostanes ; AGEs ; Gynura bicolor ; prediabetes ; phytochemical ; blood glucose ; oxidative stress ; n/a ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-08-12
    Description: Many oceans are currently undergoing rapid changes in environmental conditions such as warming temperature, acidic water condition, coastal hypoxia, etc. These changes could lead to dramatic changes in the biology and ecology of phytoplankton and consequently impact the entire marine ecosystems and global biogeochemical cycles. Marine phytoplankton can be an important indicator for the changes in marine environments and ecosystems since they are major primary producers that consolidate solar energy into various organic matter transferred to marine ecosystems throughout the food-webs. Similarly, the N2 fixers (diazotrophs) are also vulnerable to changing environmental conditions. It has been found that the polar regions can be introduced to diazotrophic activity under warming conditions and the increased N availability can lead to elevated primary productivity. Considering the fundamental roles of phytoplankton in marine ecosystems and global biogeochemical cycles, it is important to understand phytoplankton ecology and N2 fixation as a potential N source in various oceans. This Special Issue provides ecological and biogeochemical baselines in a wide range of geographic study regions for the changes in marine environments and ecosystems driven by global climate changes.
    Keywords: TEP ; TEP-C ; phytoplankton ; chlorophyll a ; POC ; primary production ; Jaran Bay ; particulate organic matter ; biochemical composition ; Chukchi Sea ; Arctic Ocean ; East China Sea ; HPLC ; diatoms ; cyanobacteria ; phytoplankton productivity ; carbon and nitrogen ; stable isotopes ; Kongsfjorden ; Svalbard ; biochemical compositions ; carbohydrates ; proteins ; lipids ; Scrippsiella trochoidea ; Heterosigma akashiwo ; biovolume ; chlorophyll-a ; particulate organic nitrogen ; particulate organic carbon ; South China Sea ; upwelling ; eddy ; diatom ; Trichodesmium ; Rhizosolenia–Richelia ; Prochlorococcus ; Synechococcus ; northwestern Pacific Ocean ; macromolecular composition ; transparent exopolymer particles ; Ross Sea ; polar night ; macromolecules ; Chukchi Shelf ; Canada Basin ; food material ; Bering Sea ; small phytoplankton ; primary productivity ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::K Economics, finance, business & management::KC Economics::KCN Environmental economics
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-05-06
    Description: Dear Colleagues, It is well established that preference (but not exclusivity) for plant-derived foods can result in both health and environmental benefits. However, it must be acknowledged that not all plant-derived foods present the same quality to consumers. Hence, traditional and novel tools to assure high-quality standards have to be applied to these types of foods. At the same time, the definition of quality may be different from product to product and must be studied accordingly. Hence, the contents of bioactive compounds, amount of fat or fatty acid profiles, vitamins, carbohydrates, volatile compounds, and microbial safety or sensorial characteristics are some of the parameters that can provide an insight into plant-derived food quality. Of course, this type of food is usually subject to some kind of postharvest processing or storage, which can alter their properties. This has also led to the need to study how these procedures change the characteristics of the original food. This Special Issue on “Quality Evaluation of Plant-Derived Foods Ⅱ” focuses on the topic of the quality assessment of plant-derived foods. This includes novel approaches to this line of research, but also the use of the established methodologies for novel plant foods, understudied species, or new data on known plant foods.
    Keywords: virgin olive oil ; Olea europea L. ; phenols ; sensory profile ; fatty acid composition ; volatile compounds ; quinoa seed fractions ; particle size ; wheat bread ; addition level ; canola ; rapeseed ; Brassica napus ; canola protein ; plant proteins ; breeding ; food safety ; sustainability ; sunflower seeds ; sunflower oil ; sunflower oilcakes ; nutritive parameters ; classification ; amino acids profile ; fatty acids composition ; fruit tree ; food policies ; food security ; Loganiaceae ; nutrients ; market economies ; novel products ; orange sweet potato ; red rice ; flakes ; bioactive compound ; antioxidant activity ; physicochemical ; sensory properties ; Prunus domestica ; standardization ; GC–MS ; antioxidant ; HPLC ; microbial limits ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences ; bic Book Industry Communication::T Technology, engineering, agriculture
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-08-12
    Description: Plants, including vegetables, are an essential element of the human diet, considering their dense nutritional content and bioactive content that could assist in boosting nutritional quality and food security. Plants are exhibiting a colossal rebound in the context of healthier lifestyles, especially as functional foods empowered with bioactive phytochemicals; they synthesize uncountable “ecochemicals” via secondary metabolism, which command medical and socioeconomic significance. Among these secondary metabolites, phenolic compounds are of prime interest and are largely present in medicinal plants, herbs, vegetables, and flowers. These metabolites are at the helm of the bitterness, color, and scent of plants, and are correlated to the beneficial health qualities expressed by the antioxidant capacity. The accretion of these health-promoting phytochemicals depends chiefly on the genetic material and the maturity stage at harvest, notwithstanding the main role that is played by preharvest factors, i.e., eustress, fertilization, irrigation, light, biostimulants, biofortification, and other agronomic practices. This Special Issue is a collection of 11 original research articles addressing the quality of seeds, microgreens, leafy vegetables, herbs, flowers, berries, fruits, and byproducts. Mainly preharvest factors were assessed regarding their effect on the qualitative aspects of the aforementioned plants.
    Keywords: chromium ; ethnopharmacology ; flavonoids ; glucose-lowering activity ; HPLC ; natural antioxidants ; polyphenol ; air humidity (RH) ; Lactuca sativa L. var. capitata ; controlled environment agriculture (CEA) ; bioactive compounds ; leaf gas exchange ; minerals profile ; genetic material ; protected horticulture ; crop sensor ; functional components ; reflectance spectroscopy ; Apiaceae ; seeds ; antioxidants ; potassium ; total dissolved solids ; protein ; growing season ; Cichorium endivia L. var. crispum Hegi ; yield ; sugars ; mineral profile ; iodine concentration ; functional compounds ; space-stored seeds ; Solanum lycopersicum L. ; weightlessness ; cosmic radiation ; macronutrients ; Spinacia oleracea L. ; carotenoids ; nitrates ; phenolic acids ; UHPLC-HRMS ; chlorophylls ; vitamin C ; trans-resveratrol ; esters ; terpenols ; glycosidic precursors ; harvest time ; Vitis vinifera ; tomato and carrot by-products ; freezing and drying impact ; antioxidant capacity ; polyphenolics ; vitamin E ; greenhouse clear film ; greenhouse diffuse-light film ; spinach yield ; nitrate content ; antioxidant activity ; ascorbic acid ; floating raft system ; biostimulant ; root application ; anthocyanins ; phenols ; reduced sugars ; carbohydrates ; minerals ; pigments ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-06-21
    Description: Since its early introduction by the Russian botanist Mikhail Semyonovich Tsvet, chromatography has been undoubtedly the most powerful analytical tool in analytical chemistry. Separation, qualitative analysis, and quantitative analysis can be achieved by choosing the right conditions. Thus, numerous gas chromatographic, liquid chromatographic, and supercritical fluid chromatographic methods have been developed and applied for most types of samples and most kinds of analytes. Additionally, older varieties such as paper chromatography and thin-layer chromatography were pioneer analytical techniques in many laboratories. Especially when hyphenated to spectrometric techniques, chromatography also allows the identification of separated analytes in a single run. Highly sophisticated equipment can answer all analytical problems very quickly. Chromatographers cooperate with many scientific fields and give their lights to medical doctors, veterinarians, food scientists, biologists, dentists, archaeologists, etc. In this Special Issue, analytical chemists were invited to prove that chromatography-based separation techniques are the ultimate analytical tool and their significant contribution is reflected in ten interesting articles.
    Keywords: polyamine ; steroid ; breast cancer ; liquid chromatography–tandem mass spectrometry ; serum ; photoaging ; proteomics ; genomics ; Swietenia macrophylla ; UV irradiation ; keratinocytes ; epidermal layer ; cosmetics ; natural product ; LC-MS/MS ; metabolomics ; targeted analysis ; nontargeted analysis ; sample preparation ; derivatization ; validation ; biomarkers ; mycophenolate mofetil ; mycophenolic acid ; pediatric patients ; limited sampling strategy ; multiple linear regression ; therapeutic drug monitoring ; almonds ; HPLC ; authenticity ; PCA ; tocopherols ; phenolics ; method validation ; Miang ; catechins ; caffeine ; gallic acid ; walnut septum ; UAE ; SPE ; flavonoids ; functional ; HPLC-DAD ; biotin acceptor peptide (BAP) ; biotin ligase BirA ; liquid chromatography tandem mass spectrometry (LC-MS/MS) ; multiple reaction monitoring (MRM) ; protein–protein interactions (PPIs) ; proximity utilizing biotinylation (PUB) ; greener HPTLC ; paracetamol ; simultaneous determination ; microflow LC-MS ; mLC-MS/MS ; liver fibrosis ; hemopexin ; biomarker ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PN Chemistry ; bic Book Industry Communication::P Mathematics & science::PN Chemistry::PNF Analytical chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-05-06
    Description: In the food and beverage industries, implementing novel methods using digital technologies such as artificial intelligence (AI), sensors, robotics, computer vision, machine learning (ML), and sensory analysis using augmented reality (AR) has become critical to maintaining and increasing the products’ quality traits and international competitiveness, especially within the past five years. Fermented beverages have been one of the most researched industries to implement these technologies to assess product composition and improve production processes and product quality. This Special Issue (SI) is focused on the latest research on the application of digital technologies on beverage fermentation monitoring and the improvement of processing performance, product quality and sensory acceptability.
    Keywords: sensor networks ; automation ; beer acceptability ; beer fermentation ; RoboBEER ; machine learning ; ultrasonic measurements ; long short-term memory ; industrial digital technologies ; yeast morphology ; automated image analysis ; heat stress ; vacuoles ; cell size ; computer vision ; foam stability ; image analysis ; lager beer ; foam retention ; polyphenols ; LC-ESI-QTOF-MS/MS ; HPLC ; medicinal plants ; ginger ; lemon ; mint ; herbal tea infusion ; antioxidants ; black pepper ; focus group ; hops ; Kawakawa ; off aromas ; gas sensors ; robotic pourer ; aroma thresholds ; climate change ; artificial neural networks ; volatile phenols ; glycoconjugates ; bushfires ; sparkling wine ; fermentation ; biogenic amines ; wine quality ; liquid chromatography ; principal component analysis ; augmented reality ; non-dairy yogurt ; contexts ; consumer acceptability ; emotional responses ; Fermentation ; Olea europaea ; respiration rate ; storage conditions ; transport ; TeeBot ; high throughput ; liquid handling robot ; metabolite analysis ; stochastic dynamic optimisation ; uncertainty ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general ; bic Book Industry Communication::P Mathematics & science::PS Biology, life sciences ; bic Book Industry Communication::T Technology, engineering, agriculture
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-06-24
    Description: The book presents a collection of original scientific studies aimed at identifying the pigments and dyes in several archaeological or historical objects and artworks. The objects under investigation span from ancient Greek vases to modern paintings, and show the importance of scientific analysis not only to reveal the artists’ materials in different contexts, but also to support conservation and curatorial strategies for the preservation and display of cultural heritage.
    Keywords: Late Cycladic I ; brominated indigoids ; Muricidae ; murex ; purpurissum ; true purple ; microRaman ; FTIR ; HPLC–DAD ; weld lake pigments ; yellow lakes ; luteolin ; 19th century ; Winsor &amp ; Newton ; conservation ; Liu Kang ; SEM-EDS ; MA-XRF ; IRFC ; X-RAY ; RTI ; hidden paintings ; pigments ; synthetic organic pigments ; royal talens ; handheld raman spectroscopy ; microraman spectroscopy ; modern artist oil paint ; urolithin C ; brazilein ; brazilwood marker component ; historical textile ; alteration ; cadmium orange ; chlorine ; selenium ; terracotta ; maize stem ; New Spain ; computerized tomography ; Raman ; SEM-EDX ; Mexican sculpture ; polychrome sculpture ; Maria Sibylla Merian ; colored prints ; hyperspectral imaging ; X-ray fluorescence spectroscopy ; photometric stereo ; Prussian blue ; non-invasive pigment characterization ; textiles ; dyes ; Peru ; ambient ionization mass spectrometry ; DART-MS ; paper spray MS ; HPLC ; non-invasive techniques ; FORS ; XRF ; illuminated manuscripts ; brazilwood ; colourants ; Antoine de Lonhy ; Torino ; reflectance spectroscopy ; SERS ; synthetic dyes ; Tholu Bommalata ; puppets ; pigment identification ; Raman spectroscopy ; scanning electron microscopy-energy dispersive spectroscopy ; microstratigraphic analysis ; Viking Age ; dyestuff ; HPLC-DAD-MS ; aragonite ; Brunswick green ; clinochlore ; mortars ; ultramarine yellow ; vermilion ; wall paintings ; XRD ; Henri Matisse ; cut-outs ; gouache ; Pigment identification ; light sensitivity ; X-ray fluorescence spectroscopy (XRF) ; Fourier transform infrared spectroscopy (FTIR) ; microfaedometry (MFT) ; n/a ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general
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    Marine Fisheries Research Department, Southeast Asian Fisheries Development Center | Singapore
    In:  http://aquaticcommons.org/id/eprint/26797 | 23782 | 2019-10-01 01:55:30 | 26797 | Southeast Asian Fisheries Development Center, Marine Fisheries Research Department
    Publication Date: 2021-07-24
    Keywords: Fisheries ; Mercury ; Histamines ; Testing ; HPLC ; Seafood ; Canned products ; Quality control
    Repository Name: AquaDocs
    Type: book_section
    Format: application/pdf
    Format: application/pdf
    Format: 115-144
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    Publication Date: 2024-04-05
    Description: Newborn Screening for Sickle Cell Disease and other Haemoglobinopathies is a Special Issue of the International Journal of Neonatal Screening. Sickle cell disease is one of the most common inherited blood disorders, with a huge impact on health care systems due to high morbidity and high mortality associated with the undiagnosed disease. Newborn screening helps to make the diagnosis early and to prevent fatal complications and diagnostic odysseys. This book gives an overview of diagnostic standards in newborn screening for sickle cell disease and examples of existing newborn screening programs.
    Keywords: QD1-999 ; Q1-390 ; glucose-6-phosphate dehydrogenase ; hydroxyurea/hydroxycarbamide ; n/a ; cord blood ; screening ; hemoglobin pattern ; capillary electrophoresis ; sickle cell disease ; (recommended) screening panel ; vaso-occlusive crisis ; Guthrie spots ; newborn screening) ; foetal haemoglobin ; harmonisation ; review ; birth prevalence ; G6PD deficiency ; prevention ; end-organ damage ; thalassemia ; MALDI-TOF ; IEF ; acute chest syndrome ; India ; sickle cell and thalassaemia screening programme ; ‘Getting to Outcomes’ ; newborn screening ; hemoglobinopathy ; service users ; public health engagement ; automated HPLC ; Kaduna State ; gene therapy for haemoglobinopathies ; ?-globin gene ; methods ; neonatal screening program ; malaria ; Plasmodium vivax ; sub-Saharan Africa ; patient organisations ; health policy ; pathophysiology ; Sickle Cell Disease ; mass spectrometry ; sickle cell disorder ; neonatal screening ; non-tribal ; Nigeria ; point-of-care ; HPLC ; laboratory methods ; registry ; patient advocacy ; bone marrow transplant ; anaemia ; hemoglobinopathies ; tribal ; newborn ; burden of disease ; patient representatives ; diagnostics ; policy making ; haemolysis ; Caribbean ; high performance liquid chromatography (HPLC) ; sickle cell disease (SCD) ; implementation science ; thema EDItEUR::P Mathematics and Science::PN Chemistry
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: With the impact of globalization in research trends, the search for healthier life styles, the increasing public demand for natural, organic, and ‘clean labelled’ products, as well as the growing global market for natural colorants in economically fast-growing countries all over the world, filamentous fungi started to be investigated as readily available sources of chemically diverse pigments and colorants. For all of these reasons, this special issue of Journal of Fungi will highlight exciting findings, which may pave the way for alternative and/or additional biotechnological processes for industrial applications of fungal pigments and colorants. Research papers and reviews about the fungal biodiversity from terrestrial and marine origins are welcome, bringing new elements about fungi as potential sources of well-known carotenoid pigments (e.g. beta-carotene, lycopene) and other specific pigmented polyketide molecules, such as Monascus and Monascus-like azaphilones, which are yet not known to be biosynthesized by any other organisms like higher plants. These polyketide pigments also include promising, and unexplored hydroxy-anthraquinoid colorants from Ascomycetous species. The investigation of biosynthetic pathways of the carotenoids and polyketide-derivative colored molecules (i.e. azaphilones, hydroxyanthraquinones, and naphthoquinones) in pigment-producing fungal species could bring some articles. Contributions about alternative greener extraction processes of the fungal colored compounds, along with current industrial applications, description of their limits and further opportunities for the use of fungal pigments in beverage, food, pharmaceutical, cosmetic, textile and painting areas will also be part of this special issue.
    Keywords: QR1-502 ; colorant ; fungal ; bostrycoidin ; biodiversity ; color ; polyketide ; pigment ; perstraction ; carotenoid ; extraction ; marine ; dyeing ; Xanthophyllomyces ; colour ; metabolite ; fungi ; biosynthesis ; Fusarium ; Talaromyces ; HPLC ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Language: English
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  • 45
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2022-01-31
    Description: The book entitled Medicinal Plants and Natural Product Research describes various aspects of ethnopharmacological uses of medicinal plants; extraction, isolation, and identification of bioactive compounds from medicinal plants; various aspects of biological activity such as antioxidant, antimicrobial, anticancer, immunomodulatory activity, etc., as well as characterization of plant secondary metabolites as active substances from medicinal plants.
    Keywords: SB1-1110 ; QH301-705.5 ; Q1-390 ; adaptation ; phytochemicals ; antioxidant activity ; Ophiopogon ; secondary metabolites ; Moringa oleifera ; drug discovery ; high-resolution melt curve (HRM) analysis ; catechin ; validation ; sickle cell anemia ; Terminalia macroptera ; Eastern Himalayas ; antioxidant ; P. niruri ; traditional medicine ; DNA barcoding ; allergy ; ?-glucosidase ; ethnobotany ; bioprospecting ; GC-MS ; TQ-ESI-MS ; processing ; mountain plants ; ethnobotanic ; antimicrobial ; activity ; Amazonian ; rbcL ; inflammation ; Pseudomonas aeruginosa ; Nirgundi ; cluster analysis ; plant-food ; ethnopharmacology ; HPLC ; Ficus hirta ; Immulina® ; mechanism of action ; stingless bees ; Brunfelsia ; health ; sesquiterpenoids ; antimicrobial activity ; Moraceae ; Liriope ; NMR ; plant metabolite ; UPLC ; oxidative stress ; antibacterial ; scavenger ; mast cells ; Malian medicinal plants ; essential oil ; Arbutus unedo L. ; Ecuador ; DPPH ; ayahuasca ; Asphodelus ; aerial parts ; antifungal ; saline habitats ; chaste tree ; nutraceuticals ; P. alliaceae ; immunLoges® ; bioproduct ; S. reticulata ; Biophytum umbraculum ; flavonoids ; scopoletin ; carboline alkaloids ; Chrysanthemum coronarium L. ; traditional knowledge ; antioxidants ; anthracene derivatives ; Tetragonula ; caffeoylquinic acids ; BHT ; Eucalyptus ; natural products ; Lannea velutina ; antibiotic resistance ; mass spectrometry ; free radical ; medicinal plants ; cytotoxicity ; skin diseases ; harvest ; proanthocyanidins ; different solvents ; ethnomedicine ; Burkea africana ; basil varieties
    Language: English
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  • 46
    Publication Date: 2024-04-05
    Description: We are very pleased to introduce the Book Version of our Special Issue in Molecules dedicated to the memory of the late Professor Dr. Charles D. Hufford. The issue has been a huge success, with 22 full-length peer-reviewed papers and a tribute by Professor Alice M.Clark. Authors, reviewers, and collaborators from many countries across the worldhave contributed to this endeavour, and we are truly grateful to all. This Special Issue isrepresentative of the broad impact that “Charlie” had on the field of bioactive naturalproducts. This Special Issue comprises papers from Professor Hufford’s former students,colleagues, and collaborators throughout the world who have utilized a wide array ofstate-of-the-art techniques to examine diverse natural sources to isolate and identify avariety of natural products with a wide spectrum of biological activities, including somenew microbial transformations and insights into bioactive molecules. Many new bioactive compounds are described and reported here for the first time. Bioactivities reportedinclude cytotoxicity, antimicrobial activity, anti-inflammatory activity, antileishmanialactivity, antitrypanosomal activity, antimalarial activity, analgesic activity, and beneficialliver activities, just to name a few. This Special Issue will undoubtedly have a lasting impact on the field of bioactive natural products, as exemplified by the career of Dr. Hufford.Lastly, without the timely and outstanding contributions from all of you, this Special Issue would not have been possible. We thank you all very much for your contributions and your time devoted to this Special Issue in memory of a special person. Finally, we express ourgratitude and thanks to the journal Molecules and their excellent team of expert reviewers for giving us the support and opportunity to make this Special Issue a huge success!
    Keywords: QD1-999 ; Q1-390 ; Prosopis glandulosa ; n/a ; pentalogin ; vasculogenesis ; Cryptococcus neoformans ; analgesic ; diterpenes ; muscadine ; anti-leishmanial activity ; Il-8 ; antioxidant activity ; cryptococcosis ; liver activity ; antimicrobial resistance ; monoamine oxidase-B ; cytotoxic activity ; monoamine oxidase-A ; gastro-resistant ; maleimides ; Turnera diffusa ; Cochlospermaceae ; fusidic acid ; jenipapo ; polyketide ; DNA barcoding ; microparticles ; antimalarial activity ; insecticidal activity ; aldose reductase inhibitor ; Baccharis ; antitrypanosomal activity ; microbial transformation ; coumarinolignans ; methicillin resistant Staphylococcus aureus (MRSA) ; multi-drug resistant (MDR) ; channel catfish ; carotenoids ; dietary supplement ; (E)-8(17) ; cardiomyogenesis ; Xylariaceae ; plant pathogenic and endophytic fungi ; antipyretic ; chromone ; acacetin 7-methyl ether ; inflammation ; endophytic fungi ; anti-inflammatory ; acacetin ; acylphloroglucinol ; Arthrinium sp. ; HPLC ; amphotericin B ; molecular dynamics ; Cochlospermum vitifolium ; lignans ; augustine N-oxide ; NF-?B ; C-26-oxidation ; isoxanthohumol ; Cunninghamella echinulata ; buphanisine N-oxide ; Stevia rebaudiana ; Torreya taxifolia ; pyranoanthocyanin ; Crinum amabile ; antibacterial ; sterols ; Flavobacterium columnare ; sesterterpene ; isolation and elucidation ; Jatropha pelargoniifolia ; Rubiaceae ; iNOS ; Mitracarpus scaber Zucc. ; obesity ; neurological disorder ; stilbenes ; hop prenylflavanone ; columnaris disease ; zerumbol ; molecular docking ; phlorogluciniol ; iso-stevioside X-ray structure ; Zingiber monatnum ; flavonoids ; factor X ; GC/MS ; flavonoids glycosides ; SAR ; Leishmania donovani ; terpenes ; 13(S)-hydroxyatisenoic acid derivative ; rebaudioside A isomers ; MS/MS ; malaria ; HPLC-ESI-IT-MS/MS ; natural products ; Morus alba L. ; biological activities ; pancreatic cancer ; thrombosis ; prosopilosidine ; Litsea cubeba ; Nemania ; HepG2 ; C-27-oxidation ; resveratrol ; cytotoxicity ; 12-labdadiene-15 ; alkaloids ; aromatic compounds ; neuroprotective agent ; diterpene glycosides ; fluconazole ; phytotoxicity ; 16-dial ; microscopy ; cytochalasins ; factor VII ; herbal medicine ; thema EDItEUR::P Mathematics and Science::PN Chemistry
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  • 47
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: Metal–organic frameworks are among the most promising novel materials. The concept of MOFs was first introduced in 1990. They were actually initially used in catalysis, gas separation, membranes, electrochemical sensors. Later on, they were introduced as SPE sorbents for PAHs (Polycyclic Aromatic Hydrocarbons) in environmental water samples, then the range expanded to the field of analytical chemistry, both in chromatographic separation and sample preparation, with great success in, e.g., SPE and SPME (Solid Phase Mico-extraction). Since then, the number of analytical applications implementing MOFs as sorbents in sorptive sample preparation approaches is increasing. ?his is reinforced by the fact that, at least theoretically, an infinite number of structures can be designed and synthesized, thus making tuneability one of the most unique characteristics of MOF materials. Moreover, they have been designed in various shapes, such as columns, fibers, and films, so that they can meet more analytical challenges with improved analytical features.Their exceptional properties attracted the interest of analytical chemists who have taken advantage of the unique structures and properties and have already introduced them in several sample pretreatment techniques, such as solid phase extraction, dispersive SPE, magnetic solid phase extraction, solid phase microextraction, stir bar sorptive extraction, etc.
    Keywords: QD1-999 ; QD146-197 ; Q1-390 ; metal organic framework (MOF) ; n/a ; thiophenic compounds ; temperature sensors ; Pb(II) ; doping ; metals ; dispersive miniaturized solid-phase extraction ; 6-dimethyldibenzothiophene (4 ; microextraction ; drug delivery ; chitosan beads ; 6-DMDBT) ; adsorptive desulfurization of fuels ; metal-organic framework ; mixed-ligand ; antimicrobial agents ; pillared ; food samples ; large-pore ; paddle-wheel ; adsorption ; non-catenated ; structural heterogeneity ; MOFs ; extraction ; metal ions ; sample preparation ; metal-organic frameworks ; interactions MOF–analyte ; luminescence ; 4 ; spectrometry ; color tuning ; antibiotics ; magnetic resonance imaging ; UiO-66 ; lanthanides ; metal organic framework ; dibenzothiophene (DBT) ; GC ; metal–organic frameworks ; mixed functionalization ; HPLC ; environmental samples ; MOF ; porosity ; polymer nanocomposites ; metal organic framework composites ; biological samples ; hydrogen-bonding ; oxidized graphitic carbon nitride nanoparticles ; fish ; thema EDItEUR::P Mathematics and Science::PN Chemistry
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  • 48
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: This book will provide the most recent knowledge and advances in Sample Preparation Techniques for Separation Science. Everyone working in a laboratory must be familiar with the basis of these technologies, and they often involve elaborate and time-consuming procedures that can take up to 80% of the total analysis time. Sample preparation is an essential step in most of the analytical methods for environmental and biomedical analysis, since the target analytes are often not detected in their in-situ forms, or the results are distorted by interfering species. In the past decade, modern sample preparation techniques have aimed to comply with green analytical chemistry principles, leading to simplification, miniaturization, easy manipulation of the analytical devices, low costs, strong reduction or absence of toxic organic solvents, as well as low sample volume requirements.Modern Sample Preparation Approaches for Separation Science also provides an invaluable reference tool for analytical chemists in the chemical, biological, pharmaceutical, environmental, and forensic sciences.
    Keywords: QD1-999 ; QD71-142 ; Q1-390 ; caffeine and acetaminophen tracers ; solvent delivery with a moving pipette ; determination ; China herbal tea ; enrichment ; review ; on-line ; pectin ; nanocomposite ; Cassiae Semen ; environmental analysis ; pathogenic ; preconcentration ; nail ; liver ; extraction ; sample preparation ; hydrogel ; solid-phase extraction ; geological samples ; ionic liquids ; rice grains ; subzero-temperature assisted liquid–liquid extraction ; sugaring-out assisted liquid–liquid extraction ; poly (OMA-co-TRIM) monolithic column ; hormones ; vortex-synchronized matrix solid-phase dispersion ; trace analysis ; gas chromatography ; LC–MS/MS ; membrane-based microextraction ; gold ; antipsychotics ; in-line filter ; HPLC ; space instrumentation ; liquid chromatography ; biological samples ; vitamins ; polyvinyl alcohol ; in-tube SPME ; high-frequency heating ; UPLC-MS/MS ; oxylipins ; nucleic acid isolation ; non-anthocyanin polyphenol ; large volume ; barbiturates ; solvent front position extraction ; oligopeptides ; urine ; SPE ; whole blood ; anthraquinones ; flow rate ; chlorophenoxy acid herbicides ; amlodipine ; schizophrenic’ patients ; salting-out assisted liquid–liquid extraction ; automation ; sorbent ; whole water ; blueberry ; hydrophobic-solvent assisted liquid–liquid extraction ; crab shells ; miniaturization ; curie temperature ; sand ; UHPLC-MS/MS ; multi-spheres adsorptive micro-extraction (MSA?E) ; floating sampling technology ; protein precipitation ; pesticides residue ; sample preparation with TLC/HPTLC ; phenolic compounds ; response surface methodology ; vortex-assisted dispersive liquid-liquid microextraction ; trapping system ; caffeine ; aflatoxins ; liquid chromatography–tandem mass spectrometry ; pesticides ; organic-based monoliths ; matrix solid phase dispersion ; simultaneous determination ; pharmaceuticals ; sorbent-based techniques ; desirability function approach ; plasma samples ; environmental water matrices ; hydrophobic in-tube solid-phase microextraction ; liquid–liquid extraction ; thema EDItEUR::P Mathematics and Science::PN Chemistry
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  • 49
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: Natural products hold a prominent position in the current discovery and development of drugs and have diverse indications for both human and animal health. Plants, in particular, play a leading role as a source of specialized metabolites with medical effects. Other organisms, such as marine and terrestrial animals and microorganisms, produce very important drug candidate molecules. Specialized metabolites from these varied natural sources can be used directly as bioactive compounds or drug precursors. In addition, due to their broad chemical diversity, they can act as drug prototypes and/or be used as pharmacological tools for different targets. Some examples of natural metabolites that have been developed into useful medical drug are cardiotonic digoxin from Digitalis sp., antimalarial artemisinin from Artemisia annua, anti-cancer taxol from Taxus sp., or podophyllotoxin from Podophyllum peltatum, which served as a synthetic model for the anti-cancer etoposide. The study of natural products is still attracting great scientific attention and their current importance, as a valuable lead for drug discovery, is undebatable. I cordially invite authors to contribute original articles, as well as survey articles, that give the readers of Molecules **MOLECULES NEEDS TO BE ITALICIZED** updated and new perspectives on natural products in drug discovery, including but not limited to natural sources, identification and separation of bioactive phytochemicals, standardization, new biological targets, pre-clinical and clinical trials, pharmacological effects/side effects, and bioassays.
    Keywords: QH301-705.5 ; Q1-390 ; dihydrochalcones ; cytotoxicity-guided ; n/a ; harpagoside ; biotechnology ; synergy ; Imperata cylindrica ; 5?-dimethylchalcone (DMC) ; antioxidant activity ; marine resources ; phenolic derivatives ; secondary metabolites ; antimicrobial agents ; antimicrobial resistance ; metabolomics ; Humulus lupulus ; chromatography ; stereochemistry ; FSE ; cytokines ; cytotoxic activity ; glutamate ; angiogenesis ; traditional medicine ; Ca2+ ; L6 cell ; human colon cancer cell lines ; siphonous green algae ; anti-inflammatory activity ; Phyllanthus chamacristoides ; spectroscopic analysis ; Physcomitrella patens ; Leishmania mexicana mexicana ; dementia ; prenylated phenolic compounds ; T2DM ; HPLC-ESI-microTOF-Q-MS/MS ; Eruca sativa ; Dryopteris fragrans ; chemosystematics ; 2? ; cerebellum ; Cleistocalyx operculatus ; inflammation ; multivariate data analysis ; Phyllanthus orbicularis ; HPLC ; cardiovascular disease ; Kv7 potassium channels ; marine peptides ; proliferation ; sulfated coumarins ; Orobanche s.l. ; phenylpropanoid glycosides ; Harpagophytum procumbens ; sesquiterpenoids ; TRPV1 ; Fideloside ; phenylethanoid glycosides ; Cuba ; molecular network ; NMR ; ketamine ; aging ; GLUT4 ; diabetes ; oxidative stress ; Lamiales ; circular dichroism ; psychosis ; antinociceptive ; immuno-regulation activity ; terpenoids ; NADPH oxidases ; diabetic neuropathy ; spagyric tincture ; H2S ; celastrol ; isolation and quantification ; 4?-dihydroxy-6?-methoxy-3? ; Leea indica ; C-glycoside ; neuropathic pain ; PANC-1 ; glucosinolates ; flavonoids ; bioactivities of natural products ; cardamonin ; isoflavones ; terpenes ; methicillin-resistant Staphylococcus aureus ; malaria ; artemisinin ; natural products ; devil’s claw ; ACE inhibitory peptide ; pPancreatic cancer ; growth inhibitory activity ; mass spectrometry ; flavonoid ; phenolics ; Astragalus boeticus L. ; proanthocyanidins ; opioid ; Trifolium ; Trypanosoma brucei brucei ; acetylated astragalosides ; Fabaceae ; bioactive peptides ; LC-MS ; Dasycladus vermicularis ; Orobanchaceae ; migration ; glucoerucin ; ESI-MS/MS ; cancer ; zebrafish ; antihypertensive ; Bacopa monnieri ; chemical derivatization ; hypertension ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
    Language: English
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  • 50
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: Throughout most of history, medicinal plants and their active metabolites have represented a valuable source of compounds used to prevent and to cure several diseases. Interest in natural compounds is still high as they represent a source of novel biologically/pharmacologically active compounds. Due to their high structural diversity and complexity, they are interesting structural scaffolds that can offer promising candidates for the study of new drugs, functional foods, and food additives.Plant extracts are a highly complex mixture of compounds and qualitative and quantitative analyses are necessary to ensure their quality. Furthermore, greener methods of extraction and analysis are needed today.This book is based on articles submitted for publication in the Special Issue entitled “Qualitative and Quantitative Analysis of Bioactive Natural Products” that collected original research and reviews on these topics.
    Keywords: QH301-705.5 ; Q1-390 ; Scorzonera ; capsaicinoids ; artificial neural network ; cerebral ischemia reperfusion injury ; antioxidant activity ; quality evaluation ; chemometrics ; secondary metabolites ; identification ; antioxidant capacity ; Moroccan region ; volatile compounds ; HPLC-Q-Exactive-Orbitrap-MS ; quantitative analysis ; amino acids content ; HPLC-ELSD ; antioxidant ; autophagy ; quantification ; sugars ; 1-triacontanol ; hemp seed oil ; Alzheimer’s disease ; macrodiolides ; extraction ; recycling preparative high performance liquid chromatography ; HPLC methods ; GC-MS ; Myristica fragrans ; Rossa da inverno sel. Rojo Duro onion cultivar ; fruit powders ; decursin ; food traceability ; ionic liquids ; separation optimisation ; Spondias spp. ; C-glycosylflavone ; wine ; UPLC-MS ; scutellarein ; saffron ; carotenoids ; red cabbage ; hydrodistillation ; Ginkgo biloba Extract (GBE) ; gas chromatography ; organic acids ; olive leaves ; crocins ; CBD oil ; Bolbostemma paniculatum ; UPLC-ESI-MS/MS ; geographical origin ; HPLC ; traditional Chinese medicine decoction ; liquid chromatography ; bioactive natural compounds ; Podospermum ; metabolic profiling ; SPME-GC/MS ; LTQ-Orbitrap ; oral administration ; UPLC ; bioactive compounds ; Erigeron breviscapus extract ; terrain conditions ; nutmeg ; antibacterial activity ; method validation ; ShenFu prescription decoction ; chili ; decursinol angelate ; statistical evaluations ; stereoselective and simultaneous analysis ; curcuminoids ; Talaromyces pinophilus ; talarodiolide ; HPLC-Q-TOF-MS/MS ; Olea europaea L. ; triterpenes ; chromatogram-bioactivity correlation ; essential oil ; stability ; Staphylococcus aureus ; Iris lactea Pall. var. chinensis (Fisch.) Koidz. ; endothelial function ; anthocyanins ; HPLC analysis ; liquid chromatography-mass spectrometry ; nodakenin ; turmerone ; UHPLC-MS/MS ; Quercus acuta leaf ; Curcuma longa ; UHPLC analysis ; ginseng berry extract ; geographical variation ; qualitative analysis ; Sorbus ; free radical-scavenging ; ginsenosides ; flavonoids ; biostimulant ; GC/MS ; terpenes ; aleuritolic acid ; phenolic compounds ; apoptosis ; response surface methodology ; phenolic acids ; pharmacokinetics ; mass spectrometry ; scutellarin ; multivariate statistical analysis ; phenolics ; MODDE experimental design ; proanthocyanidins ; UFLC-QQQ-MS ; rice ; cannabidiol ; odor-activity values ; UPLC-QTOF-MS ; turmeric ; decursinol ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
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  • 51
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: Algae have been used since ancient times as food for humans, animal feed, agricultural fertilizer, and as a source of substances for therapeutic use. Currently, seaweed represents a vast source of raw materials used in the pharmaceutical, food, traditional medicine, and cosmetics industries. They are nutritionally valuable, both fresh and dried, or as ingredients in a wide variety of pre-made foods. In particular, seaweed contains significant amounts of protein, lipids, minerals, and vitamins. Information is limited on the role of algae and their metabolites in therapy. Only a few taxa have been studied for use in medicine. Many traditional cultures report the healing powers of selected algae in tropical and subtropical marine forms. This is especially true in the maritime areas of Asia, where the sea plays a significant role in daily activities. However, currently, only a few genera and species of algae are involved in aspects of medicine and therapy. The beneficial uses of seaweed or seaweed products include those that can mimic specific manifestations of human disease, production of antibiotic compounds, or improved human nutrition.
    Keywords: QH301-705.5 ; Q1-390 ; TX341-641 ; alginate ; minerals ; n/a ; edible seaweed ; macro algae ; Mycoplasma pneumoniae ; nutritional value ; seaweeds ; low molecular weight fucoidan ; osteoblast ; huBM-MSC ; ulvan ; HDL-C ; diffusion model ; adjuvant ; phlorotannin ; chlorophylls ; alkaline phosphatase ; raw laver ; heavy metals adsorption ; quantification ; colorectal cancer ; microbial risk ; processing technology ; anticoagulant activity ; isolation ; keratinocytes ; Black Sea ; Osmundea pinnatifida ; marine algae ; feed ; antigen-specific antibody ; bromophenols ; Ulva rigida ; carotenoids ; natural resources ; LDL-C ; functional substance ; agriculture ; particulate matter ; processed laver product ; reactive oxygen species ; health functionality ; cancer stem cells ; cytotoxicity ; HPLC ; omics-based technology ; Sargassum muticum ; TC reduction ; FTIR-ATR ; chemical risk ; enzymatic extracts ; n-3 PUFAs ; mono and polysaccharides ; health ; chemical sulfation ; food ; TC ; NMR ; TG ; carrageenan ; antitumour activity ; NK cell ; Cystoseira barbata ; EPA ; phlorofucofuroeckol A ; Ecklonia cava ; macroalgae/seaweed ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
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  • 52
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-03-27
    Description: This Special Issue, “Research as a Development Perspective”, is dedicated to data presented at the first Conference in Chemistry for Graduate/Postgraduate Students and PhD candidates at Aristotle University of Thessaloniki, which was the outcome of research conducted by young chemists in Northern Greece. The conference was organized by the Chemistry Department at Aristotle University of Thessaloniki, the Association of Greek Chemists-Division of Central and Western Macedonia, and the Association of Chemists in Northern Greece. The scope of this conference was to provide young chemists (but also last year’s students) with the opportunity to be well prepared for their next career steps in an increasingly demanding job market. Moreover, they had the possibility of presenting their scientific results to a large audience, which strengthened their soft skills. Lastly, the active engagement of students in the organization of the conference enhanced their teamwork abilities, a highly valuable when developing professional maturity.
    Keywords: HPLC-DAD ; bisphenol A ; 4-Hydroxybenzoic Acid ; 4-Hydroxyacetophenone hydroquinone ; Lactococcus lactis ; reversed-phase liquid chromatography ; ionizable and non-ionizable analytes ; isocratic and gradient elution in different eluent pHs ; computer-assisted separation optimization ; visualization of predicted chromatograms ; silk fibroin ; drug delivery ; magnetic silk fibroin ; bovine serum albumin ; food ; sample preparation techniques ; sulfonamides ; high-performance liquid chromatography ; HPLC ; ultra-high-performance liquid chromatography ; UHPLC ; Derveni ; Ancient Macedonia ; micro-XRF ; XRD ; HS-SPME/GC-MS ; ancient medicines ; ancient pharmaceuticals ; shellfish purple ; porphyra ; high-tin bronzes ; bronzes ; phosphorus ; boron ; inductively coupled plasma ; atomic emission spectrometry ; fertilizers ; acid dissolution ; wet digestion ; NSAIDs ; derivatization ; GC-MS ; serum ; thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
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  • 53
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-09
    Description: This book entitled Marine Algal Antioxidants, as a special issue of the Antioxidants journal, encloses eleven scientific articles with a preface written by the two editors, Christophe Brunet and Clementina Sansone. Marine Algal Antioxidants book reports advances of the research on marine photosynthetic organisms for the growth of biotechnological pipelines aimed to enhance antioxidant molecules production by algae. More than twenty scientists share the results of their research and highlight the relevance of algae for developing marine biotechnology products to flourish the requirements of nutraceuticals or cosmeceuticals in the defense of human health. Multidisciplinarity of the scientific approaches presented in this book – such as physiological, molecular, chemistry, technical or technological methodologies – lays the foundation for harmonizing the links between them towards the unique goal of the improvement of marine algal factory processes.
    Keywords: algae ; Chlorella ; Fucus ; detoxification ; environmental pollution ; antioxidants ; heavy metals ; selenium ; SOD-1 ; neurotoxicology ; aminoazuphrates ; clinical medicine ; nutrition ; neuropathology ; Dunaliella salina ; microalgae ; red LED ; blue LED ; growth ; carotenoids ; plastoquinol:oxygen oxidoreductase ; photosynthesis ; antioxidant activities ; Box–Behnken design ; microwave-assisted extraction ; polysaccharide ; Ulva pertusa ; seaweed ; 9-cis β-carotene ; all-trans β-carotene ; light intensity ; isomerisation ; light ; ascorbic acid ; phenolic compounds ; flavonoids ; photoprotection ; Phaeodactylum tricornutum ; fucoxanthin ; antioxidative ; antiproliferative ; antioxidant ; biodiversity ; genome–scale metabolic networks (GSMNs), data integration ; brown algae ; oxygenated carotenoid biosynthesis ; abscisic acid ; Saccharina japonica ; Cladosiphon okamuranus ; lipophilic antioxidant ; solvent blending ; macroalgae ; LC-ESI-MS/MS ; carotenoid pigment ; anthocyanin ; chlorophyll derivative ; phototrophic ; heterotrophic ; Scenedesmus ; chlorophylls ; hydroxy-chlorophyll ; oxidative metabolism ; ROS ; lactone-chlorophyll ; photoacclimation ; seaweeds ; green algae ; marine algae ; Ulva intestinalis ; Enteromorpha intestinalis ; quantification ; polyphenols ; apigenin ; accelerated solvent extraction ; ASE ; HPLC-LRMS ; HPLC-HRMS ; HPLC ; TPC ; Folin–Ciocalteu ; TFC ; qNMR ; n/a ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TB Technology: general issues
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  • 54
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: For the past 40 years, metal-based drugs have been widely used for the treatment of cancer. Cisplatin and follow-up drugs carboplatin (ParaplatinTM) and oxaliplatin (EloxatinTM) have been the gold standard for metallodrugs in clinical settings as antineoplastic agents. While effective, these drugs (either alone or in combination therapy) have faced a number of clinical challenges resulting from their limited spectrum of activity, high toxicity leading to significant side effects, resistance, poor water solubility, low bioavailability and short circulating time. In the past 10 years, various unconventional non-platinum metal-based agents have emerged as a potential alternative for cancer treatment. These compounds are highly effective and selective in cancers resistant to cisplatin and other chemotherapeutic agents. Research in this area has recently exploded with a relevant number of patents and clinical trials, in addition to reports in scientific journals. Furthermore, in parallel to the synthesis of coordination and organometallic compounds comprising many different metals and unconventional platinum-based derivatives, researchers are focused on optimizing mechanistic and pharmacological features of promising drug candidates. This Special Issue aims to highlight the latest advances in anticancer metallodrugs with a focus on unconventional anticancer agents, as well as novel activation, targeting and delivery strategies aimed at improving their pharmacological profile.
    Keywords: QH301-705.5 ; QD415-436 ; Q1-390 ; ?–? stacking ; encapsulation ; n/a ; oxindolimine–metal complexes ; cyclodextrin ; platinum iodido complexes ; distribution coefficient ; antiproliferative activity ; anticancer agents ; nanotubes ; ruthenium ; platinum ; Log kw ; nanoparticles ; drug discovery ; metal complex ; metallodrugs ; isatin-derived ligands ; anticancer drug ; upconverting nanoparticles ; pyridine benzimidazole ; dendrimers ; liposomes ; thiophene ; angiogenesis ; micelles ; HSA oxidation ; platinum(IV) ; imaging ; chromatographic lipophilicity parameter ; amidophosphine ; copper and iron chelators in cancer ; Log P ; biomacromolecules ; bones ; DNA cleavage ; stopped-flow spectroscopy ; silver ; phosphonates ; transmetalation ; metallomics ; MRI ; fluorescence quenching ; partition coefficient ; gold fingers ; anticancer ; HSA binding ; gold ; ?0 ; targeting ; metastasis ; DNA interaction ; antimigration ; cytotoxicity ; HPLC ; ruthenium complexes ; zinc finger proteins ; Gold(III) complexes ; aquaporins ; antiproliferative ; protein-DNA recognition ; photoactivation ; lipophilicity ; cancer ; 1-methylcytosine ; PET ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
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  • 55
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    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2024-04-05
    Description: Biogenic amines have been known for some time. These compounds are found in varying concentrations in a wide range of foods (fish, cheese, meat, wine, beer, vegetables, etc.) and their formations are influenced by different factors associated to those foods (composition, additives, ingredients, storage, microorganism, packaging, handing, conservation, etc.). The intake of foods containing high concentrations of biogenic amines can present a health hazard. Additionally, they have been used to establish indexes in various foods in order to signal the degree of freshness and/or deterioration of food. Nowadays, there has been an increase in the number of food poisoning episodes in consumers associated with the presence of these biogenic amines, mainly associated with histamines. Food safety is one of the main concerns of the consumer and safety agencies of different countries (EFSA, FDA, FSCJ, etc.), which have, as one of their main objectives, to control these biogenic amines, principally histamine, to assure a high level of food safety.Therefore, it is necessary to deepen our understanding of the formation, monitoring and reduction of biogenic amines during the development, processing and storage of food, even the effect of biogenic amines in consumers after digestion of foods with different levels of these compounds.With this aim, we are preparing a Special Issue on the topic of ""Biogenic Amines in Food Safety"", and we invite researchers to contribute original and unpublished research articles and reviews articles that involve studies of biogenic amines in food, which can provide an update to our knowledge of these compounds and their impacts on food quality and food safety.
    Keywords: QH301-705.5 ; Q1-390 ; catecholamines ; radish kimchi ; Chonggak kimchi ; cheese ; biogenic amines ; herby cheese ; Kkakdugi ; serotonin ; screening method ; storage conditions ; putrescine ; quality control ; decarboxylase enzymes ; food products ; iodine feed ; intervention methods ; bowel diseases ; tyramine ; decarboxylase activity ; plant-origin foods ; nutrition ; high hydrostatic pressure ; Lactobacillus brevis ; physico-chemical composition ; artisanal cheese ; free amino acid ; histamine ; gastrointestinal tract ; culinary process ; meat species ; food quality ; Bacillus spp. ; inflammation ; fermented soybean foods ; quality index ; polyamines ; HPLC ; public health ; cadaverine ; gastric cancer ; kimchi ; colon cancer ; quality indexes ; control ; lactic acid bacteria ; legislation–regulation ; food safety ; raw milk cheese ; starter cultures ; analytical determination ; histamine intolerance ; low-histamine diet ; starter culture ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
    Language: English
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  • 56
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    Unknown
    MDPI - Multidisciplinary Digital Publishing Institute
    Publication Date: 2023-12-20
    Description: This Topical Collection of Molecules provides the most recent advancements and trends within the framework of food analysis, confirming the growing public, academic, and industrial interest in this field. The articles broach topics related to sample preparation, separation science, spectroscopic techniques, sensors and biosensors, as well as investigations dealing with the characterization of macronutrients, micronutrients, and other biomolecules. It offers the latest updates regarding alternative food sources (e.g., algae), functional foods, effects of processing, chiral or achiral bioactive compounds, contaminants, and every topic related to food science that is appealing to readers. Nowadays, the increasing awareness of the close relation among diet, health, and social development is stimulating demands for high levels of quality and safety in agro-food production, as well as new studies to fill gaps in the actual body of knowledge about food composition. For these reasons, modern research in food science and human nutrition is moving from classical methodologies to advanced instrumental platforms for comprehensive characterization. Nondestructive spectroscopic and imaging technologies are also proposed for food process monitoring and quality control in real time.
    Keywords: QA1-939 ; Q1-390 ; high resolution mass spectrometry ; multiple reaction monitoring (MRM) ; PAT detection ; ?13C-IRMS ; thiamphenicol ; phospholipids ; HRMS ; chemometrics ; Box–Behnken design ; ultra-fast liquid chromatography (UFLC)–TripleTOF MS ; review ; chiral stationary phases ; blends ; validation ; microwave-assisted hydrodistillation ; carbohydrates ; antioxidant ; chiral ; quality control ; fruit juice ; modified electrode ; extraction techniques ; food composition ; nitrite detection ; HPLC fingerprint ; milk ; hops extracts ; real-time quantitative PCR ; apple juice ; Q-Orbitrap ; myrtle ; phylogeny ; fermentation ; aptamers ; antibiotics ; flavor profile ; carotenoids ; polyelectrolyte composite film ; hydrodistillation ; food quality ; amino acids ; bottle aging ; flavokavains ; qualitative and quantitative PCR ; high-throughput sequencing technology ; mass fragmentation ; fruit jams ; ASE ; walnut varieties ; anti-inflammatory ; Pol gene ; systematic evolution of ligands by exponential enrichment ; enantiomers ; agro-biodiversity ; florfenicol ; cuprous oxide nanoparticles ; geographical origin ; HPLC ; sunset yellow ; poultry eggs ; adulteration ; dimerization ; Lactarius deliciosus ; Scenedesmus ; HPLC–QTOF–MS/MS ; ultrasound-assisted extraction ; food ; UPLC-FLD ; hard clams ; NMR ; confirmatory method ; cyclic voltammetry ; 1H-NMR ; molecular identification ; bioactive compounds ; immature honey ; chemical composition ; differential pulse voltammetry ; kavalactones ; Polygonatum cyrtonema ; oligosaccharides ; Chia seed oil ; kiwifruit (Actinidia chinensis) ; biogenic amines ; supercritical fluid extraction ; rosé wines ; spectrum-effect relationship ; DNA barcode ; saccharides ; bifunctional polymer arms ; single-laboratory validation ; lipid-lowering effect ; microalgae ; essential oil ; polarity ; food process control ; food authentication ; Meretrix lyrata ; anthocyanins ; molecular species of phospholipid ; microwave-assisted extraction ; principal component analysis (PCA) ; fat-soluble vitamins ; Croatian wines ; mass spectra ; 1H NMR ; carbamates ; Marynka strain ; IMS ; Myrtus communis L. ; clenbuterol ; mycotoxin ; closures ; Piper methysticum (kava) ; liquid chromatography mass spectrometry ; florfenicol amine ; polyunsaturated fatty acid ; white wines ; second-derivative linear sweep voltammetry ; gold nanoparticles biosensor ; chemometric analysis ; multi-physicochemical parameters ; antihyperglycemic ; antioxidants ; phenolic compounds ; enhanced product ion (EPI) ; steaming ; fatty acids composition ; reduced graphene oxide ; Tricholoma matsutake ; PLS ; phenolic acids ; Sojae semen praeparatum (SSP) ; muscle ; Myrtus communis ; pesticide residues ; quercetin ; collagen peptide ; conversion ; DNA extraction ; fatty acids ; isomerization ; lipid classes ; natural mature honey ; milk powder ; fructose ; molecular weight ; UHPLC-UV ; food adulteration ; metabolites ; food safety ; acidity ; food security ; impedimetric aptasensor ; ?-blockers ; screen-printed interface ; bic Book Industry Communication::P Mathematics & science
    Language: English
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  • 57
    Publication Date: 2016-02-06
    Description: The position of Xenacoelomorpha in the tree of life remains a major unresolved question in the study of deep animal relationships. Xenacoelomorpha, comprising Acoela, Nemertodermatida, and Xenoturbella, are bilaterally symmetrical marine worms that lack several features common to most other bilaterians, for example an anus, nephridia, and a circulatory system. Two conflicting hypotheses are under debate: Xenacoelomorpha is the sister group to all remaining Bilateria (= Nephrozoa, namely protostomes and deuterostomes) or is a clade inside Deuterostomia. Thus, determining the phylogenetic position of this clade is pivotal for understanding the early evolution of bilaterian features, or as a case of drastic secondary loss of complexity. Here we show robust phylogenomic support for Xenacoelomorpha as the sister taxon of Nephrozoa. Our phylogenetic analyses, based on 11 novel xenacoelomorph transcriptomes and using different models of evolution under maximum likelihood and Bayesian inference analyses, strongly corroborate this result. Rigorous testing of 25 experimental data sets designed to exclude data partitions and taxa potentially prone to reconstruction biases indicates that long-branch attraction, saturation, and missing data do not influence these results. The sister group relationship between Nephrozoa and Xenacoelomorpha supported by our phylogenomic analyses implies that the last common ancestor of bilaterians was probably a benthic, ciliated acoelomate worm with a single opening into an epithelial gut, and that excretory organs, coelomic cavities, and nerve cords evolved after xenacoelomorphs separated from the stem lineage of Nephrozoa.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cannon, Johanna Taylor -- Vellutini, Bruno Cossermelli -- Smith, Julian 3rd -- Ronquist, Fredrik -- Jondelius, Ulf -- Hejnol, Andreas -- England -- Nature. 2016 Feb 4;530(7588):89-93. doi: 10.1038/nature16520.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Naturhistoriska Riksmuseet, PO Box 50007, SE-104 05 Stockholm, Sweden. ; Sars International Centre for Marine Molecular Biology, University of Bergen, Thormohlensgate 55, 5008 Bergen, Norway. ; Department of Biology, Winthrop University, 701 Oakland Avenue, Rock Hill, South Carolina 29733, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26842059" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Structures/anatomy & histology ; Animals ; Aquatic Organisms/*classification/genetics ; Bayes Theorem ; Genes ; Likelihood Functions ; Male ; Models, Biological ; *Phylogeny ; Transcriptome
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 58
    Publication Date: 2016-02-19
    Description: Sex differences in physiology and disease susceptibility are commonly attributed to developmental and/or hormonal factors, but there is increasing realization that cell-intrinsic mechanisms play important and persistent roles. Here we use the Drosophila melanogaster intestine to investigate the nature and importance of cellular sex in an adult somatic organ in vivo. We find that the adult intestinal epithelium is a cellular mosaic of different sex differentiation pathways, and displays extensive sex differences in expression of genes with roles in growth and metabolism. Cell-specific reversals of the sexual identity of adult intestinal stem cells uncovers the key role this identity has in controlling organ size, reproductive plasticity and response to genetically induced tumours. Unlike previous examples of sexually dimorphic somatic stem cell activity, the sex differences in intestinal stem cell behaviour arise from intrinsic mechanisms that control cell cycle duration and involve a new doublesex- and fruitless-independent branch of the sex differentiation pathway downstream of transformer. Together, our findings indicate that the plasticity of an adult somatic organ is reversibly controlled by its sexual identity, imparted by a new mechanism that may be active in more tissues than previously recognized.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hudry, Bruno -- Khadayate, Sanjay -- Miguel-Aliaga, Irene -- Medical Research Council/United Kingdom -- England -- Nature. 2016 Feb 18;530(7590):344-8. doi: 10.1038/nature16953.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉MRC Clinical Sciences Centre, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26887495" target="_blank"〉PubMed〈/a〉
    Keywords: Adult Stem Cells/*cytology ; Animals ; Cell Cycle ; Cell Proliferation ; Cell Transformation, Neoplastic ; Dosage Compensation, Genetic ; Drosophila Proteins/metabolism ; Drosophila melanogaster/*anatomy & histology/*cytology/genetics/growth & ; development ; Female ; Intestines/*cytology ; Male ; Nuclear Proteins/metabolism ; *Organ Size ; RNA-Binding Proteins/metabolism ; Reproduction ; Ribonucleoproteins/metabolism ; *Sex Characteristics ; Sex Differentiation/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 59
    Publication Date: 2016-04-29
    Description: The meaning of language is represented in regions of the cerebral cortex collectively known as the 'semantic system'. However, little of the semantic system has been mapped comprehensively, and the semantic selectivity of most regions is unknown. Here we systematically map semantic selectivity across the cortex using voxel-wise modelling of functional MRI (fMRI) data collected while subjects listened to hours of narrative stories. We show that the semantic system is organized into intricate patterns that seem to be consistent across individuals. We then use a novel generative model to create a detailed semantic atlas. Our results suggest that most areas within the semantic system represent information about specific semantic domains, or groups of related concepts, and our atlas shows which domains are represented in each area. This study demonstrates that data-driven methods--commonplace in studies of human neuroanatomy and functional connectivity--provide a powerful and efficient means for mapping functional representations in the brain.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4852309/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4852309/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huth, Alexander G -- de Heer, Wendy A -- Griffiths, Thomas L -- Theunissen, Frederic E -- Gallant, Jack L -- EY019684/EY/NEI NIH HHS/ -- R01 EY019684/EY/NEI NIH HHS/ -- England -- Nature. 2016 Apr 28;532(7600):453-8. doi: 10.1038/nature17637.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA. ; Department of Psychology, University of California, Berkeley, California 94720, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27121839" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Auditory Perception ; *Brain Mapping ; Cerebral Cortex/*anatomy & histology/*physiology ; Female ; Humans ; Magnetic Resonance Imaging ; Male ; Narration ; Principal Component Analysis ; Reproducibility of Results ; *Semantics ; *Speech
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  • 60
    Publication Date: 2016-03-24
    Description: Developmental disabilities, including attention-deficit hyperactivity disorder (ADHD), intellectual disability (ID), and autism spectrum disorders (ASD), affect one in six children in the USA. Recently, gene mutations in patched domain containing 1 (PTCHD1) have been found in ~1% of patients with ID and ASD. Individuals with PTCHD1 deletion show symptoms of ADHD, sleep disruption, hypotonia, aggression, ASD, and ID. Although PTCHD1 is probably critical for normal development, the connection between its deletion and the ensuing behavioural defects is poorly understood. Here we report that during early post-natal development, mouse Ptchd1 is selectively expressed in the thalamic reticular nucleus (TRN), a group of GABAergic neurons that regulate thalamocortical transmission, sleep rhythms, and attention. Ptchd1 deletion attenuates TRN activity through mechanisms involving small conductance calcium-dependent potassium currents (SK). TRN-restricted deletion of Ptchd1 leads to attention deficits and hyperactivity, both of which are rescued by pharmacological augmentation of SK channel activity. Global Ptchd1 deletion recapitulates learning impairment, hyper-aggression, and motor defects, all of which are insensitive to SK pharmacological targeting and not found in the TRN-restricted deletion mouse. This study maps clinically relevant behavioural phenotypes onto TRN dysfunction in a human disease model, while also identifying molecular and circuit targets for intervention.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4875756/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4875756/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wells, Michael F -- Wimmer, Ralf D -- Schmitt, L Ian -- Feng, Guoping -- Halassa, Michael M -- F31 MH098641/MH/NIMH NIH HHS/ -- R00 NS078115/NS/NINDS NIH HHS/ -- R01 MH097104/MH/NIMH NIH HHS/ -- R01 MH107680/MH/NIMH NIH HHS/ -- R01MH097104/MH/NIMH NIH HHS/ -- R01MH10768/MH/NIMH NIH HHS/ -- England -- Nature. 2016 Apr 7;532(7597):58-63. doi: 10.1038/nature17427. Epub 2016 Mar 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurobiology, Duke University Medical Center, Durham, North Carolina 27710, USA. ; McGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA. ; Neuroscience Institute, New York University Langone Medical Center, New York, New York 10016, USA. ; Department of Neuroscience and Physiology, New York University Langone Medical Center, New York, New York 10016, USA. ; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA. ; Department of Psychiatry, New York University Langone Medical Center, New York, New York 10016, USA. ; Center for Neural Science, New York University, New York, New York 1003, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27007844" target="_blank"〉PubMed〈/a〉
    Keywords: Aggression ; Animals ; Animals, Newborn ; Attention ; Attention Deficit Disorder with ; Hyperactivity/genetics/*physiopathology/*psychology ; Behavior, Animal ; Disease Models, Animal ; Electric Conductivity ; Female ; GABAergic Neurons/metabolism/pathology ; *Gene Deletion ; Humans ; Learning Disorders/genetics/physiopathology ; Male ; Membrane Proteins/*deficiency/*genetics/metabolism ; Mice ; Mice, Knockout ; Motor Disorders/genetics/physiopathology ; Neural Inhibition ; Potassium Channels, Calcium-Activated/metabolism ; Sleep ; Sleep Deprivation/genetics/physiopathology ; Thalamic Nuclei/pathology/*physiopathology
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  • 61
    Publication Date: 2016-01-07
    Description: Endothelial cells (ECs) are plastic cells that can switch between growth states with different bioenergetic and biosynthetic requirements. Although quiescent in most healthy tissues, ECs divide and migrate rapidly upon proangiogenic stimulation. Adjusting endothelial metabolism to the growth state is central to normal vessel growth and function, yet it is poorly understood at the molecular level. Here we report that the forkhead box O (FOXO) transcription factor FOXO1 is an essential regulator of vascular growth that couples metabolic and proliferative activities in ECs. Endothelial-restricted deletion of FOXO1 in mice induces a profound increase in EC proliferation that interferes with coordinated sprouting, thereby causing hyperplasia and vessel enlargement. Conversely, forced expression of FOXO1 restricts vascular expansion and leads to vessel thinning and hypobranching. We find that FOXO1 acts as a gatekeeper of endothelial quiescence, which decelerates metabolic activity by reducing glycolysis and mitochondrial respiration. Mechanistically, FOXO1 suppresses signalling by MYC (also known as c-MYC), a powerful driver of anabolic metabolism and growth. MYC ablation impairs glycolysis, mitochondrial function and proliferation of ECs while its EC-specific overexpression fuels these processes. Moreover, restoration of MYC signalling in FOXO1-overexpressing endothelium normalizes metabolic activity and branching behaviour. Our findings identify FOXO1 as a critical rheostat of vascular expansion and define the FOXO1-MYC transcriptional network as a novel metabolic checkpoint during endothelial growth and proliferation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wilhelm, Kerstin -- Happel, Katharina -- Eelen, Guy -- Schoors, Sandra -- Oellerich, Mark F -- Lim, Radiance -- Zimmermann, Barbara -- Aspalter, Irene M -- Franco, Claudio A -- Boettger, Thomas -- Braun, Thomas -- Fruttiger, Marcus -- Rajewsky, Klaus -- Keller, Charles -- Bruning, Jens C -- Gerhardt, Holger -- Carmeliet, Peter -- Potente, Michael -- K08CA090438/CA/NCI NIH HHS/ -- Cancer Research UK/United Kingdom -- England -- Nature. 2016 Jan 14;529(7585):216-20. doi: 10.1038/nature16498. Epub 2016 Jan 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Angiogenesis &Metabolism Laboratory, Max Planck Institute for Heart and Lung Research, D-61231 Bad Nauheim, Germany. ; Laboratory of Angiogenesis and Neurovascular Link, Vesalius Research Center, Department of Oncology, University of Leuven, Leuven 3000, Belgium. ; Laboratory of Angiogenesis and Neurovascular Link, Vesalius Research Center, VIB, Leuven 3000, Belgium. ; Vascular Biology Laboratory, London Research Institute, Cancer Research UK, London WC2A 3LY, UK. ; Vascular Morphogenesis Laboratory, Instituto de Medicina Molecular, Faculdade de Medicina da Universidade de Lisboa, Lisbon 1649-028, Portugal. ; Department of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research, D-61231 Bad Nauheim, Germany. ; UCL Institute of Ophthalmology, University College London, London EC1V 9EL, UK. ; Max Delbruck Center for Molecular Medicine (MDC), D-13125 Berlin, Germany. ; Children's Cancer Therapy Development Institute, Beaverton, Oregon 97005, USA. ; Max Planck Institute for Metabolism Research, Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Center of Molecular Medicine Cologne (CMMC), Center for Endocrinology, Diabetes and Preventive Medicine (CEDP), University of Cologne, D-50931 Cologne, Germany. ; Vascular Patterning Laboratory, Vesalius Research Center, VIB and University of Leuven, Leuven 3000, Belgium. ; DZHK (German Center for Cardiovascular Research), partner site Berlin, D-13347 Berlin, Germany. ; Berlin Institute of Health (BIH), D-10117 Berlin, Germany. ; International Institute of Molecular and Cell Biology, 02-109 Warsaw, Poland. ; DZHK (German Center for Cardiovascular Research), partner site Frankfurt Rhine-Main, D-13347 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26735015" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Proliferation ; Cell Respiration ; Endothelium, Vascular/cytology/*growth & development/*metabolism ; Female ; Forkhead Transcription Factors/deficiency/genetics/*metabolism ; Glycolysis ; Human Umbilical Vein Endothelial Cells/cytology/metabolism ; Humans ; Male ; Mice ; Mice, Inbred C57BL ; Proto-Oncogene Proteins c-myc/deficiency/genetics/metabolism ; Signal Transduction
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  • 62
    Publication Date: 2016-04-14
    Description: Bone marrow endothelial cells (BMECs) form a network of blood vessels that regulate both leukocyte trafficking and haematopoietic stem and progenitor cell (HSPC) maintenance. However, it is not clear how BMECs balance these dual roles, and whether these events occur at the same vascular site. We found that mammalian bone marrow stem cell maintenance and leukocyte trafficking are regulated by distinct blood vessel types with different permeability properties. Less permeable arterial blood vessels maintain haematopoietic stem cells in a low reactive oxygen species (ROS) state, whereas the more permeable sinusoids promote HSPC activation and are the exclusive site for immature and mature leukocyte trafficking to and from the bone marrow. A functional consequence of high permeability of blood vessels is that exposure to blood plasma increases bone marrow HSPC ROS levels, augmenting their migration and differentiation, while compromising their long-term repopulation and survival. These findings may have relevance for clinical haematopoietic stem cell transplantation and mobilization protocols.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Itkin, Tomer -- Gur-Cohen, Shiri -- Spencer, Joel A -- Schajnovitz, Amir -- Ramasamy, Saravana K -- Kusumbe, Anjali P -- Ledergor, Guy -- Jung, Yookyung -- Milo, Idan -- Poulos, Michael G -- Kalinkovich, Alexander -- Ludin, Aya -- Kollet, Orit -- Shakhar, Guy -- Butler, Jason M -- Rafii, Shahin -- Adams, Ralf H -- Scadden, David T -- Lin, Charles P -- Lapidot, Tsvee -- EB017274/EB/NIBIB NIH HHS/ -- HL100402/HL/NHLBI NIH HHS/ -- R01 EB017274/EB/NIBIB NIH HHS/ -- U01 HL100402/HL/NHLBI NIH HHS/ -- England -- Nature. 2016 Apr 21;532(7599):323-8. doi: 10.1038/nature17624. Epub 2016 Apr 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology, The Weizmann Institute of Science, Rehovot 76100, Israel. ; Wellman Center for Photomedicine, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA. ; Center for Systems Biology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA. ; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts 02138, USA. ; Harvard Stem Cell Institute, Cambridge, Massachusetts 02114, USA. ; Center for Regenerative Medicine and Cancer Center, Massachusetts General Hospital, Boston, Massachusetts 02114, USA. ; Max Planck Institute for Molecular Biomedicine, Department of Tissue Morphogenesis and Faculty of Medicine, University of Munster, D-48149 Munster, Germany. ; Internal Medicine Department, Tel-Aviv Sourasky Medical Center, Tel-Aviv 64239, Israel. ; Department of Genetic Medicine, Weill Cornell Medical College, New York, New York 10065, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27074509" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, Ly/metabolism ; Arteries/cytology/physiology ; Blood Vessels/*cytology/*physiology ; Bone Marrow/*blood supply ; Bone Marrow Cells/cytology ; Cell Differentiation ; Cell Movement ; Cell Self Renewal ; Cell Survival ; Chemokine CXCL12/metabolism ; Endothelial Cells/physiology ; Female ; *Hematopoiesis ; Hematopoietic Stem Cell Mobilization ; Hematopoietic Stem Cell Transplantation ; Hematopoietic Stem Cells/cytology ; Leukocytes/cytology ; Male ; Membrane Proteins/metabolism ; Mice ; Mice, Inbred C57BL ; Nestin/metabolism ; Pericytes/physiology ; Permeability ; Plasma/metabolism ; Reactive Oxygen Species/metabolism ; Receptors, CXCR4/metabolism
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  • 63
    Publication Date: 2016-01-19
    Description: Many procedures in modern clinical medicine rely on the use of electronic implants in treating conditions that range from acute coronary events to traumatic injury. However, standard permanent electronic hardware acts as a nidus for infection: bacteria form biofilms along percutaneous wires, or seed haematogenously, with the potential to migrate within the body and to provoke immune-mediated pathological tissue reactions. The associated surgical retrieval procedures, meanwhile, subject patients to the distress associated with re-operation and expose them to additional complications. Here, we report materials, device architectures, integration strategies, and in vivo demonstrations in rats of implantable, multifunctional silicon sensors for the brain, for which all of the constituent materials naturally resorb via hydrolysis and/or metabolic action, eliminating the need for extraction. Continuous monitoring of intracranial pressure and temperature illustrates functionality essential to the treatment of traumatic brain injury; the measurement performance of our resorbable devices compares favourably with that of non-resorbable clinical standards. In our experiments, insulated percutaneous wires connect to an externally mounted, miniaturized wireless potentiostat for data transmission. In a separate set-up, we connect a sensor to an implanted (but only partially resorbable) data-communication system, proving the principle that there is no need for any percutaneous wiring. The devices can be adapted to sense fluid flow, motion, pH or thermal characteristics, in formats that are compatible with the body's abdomen and extremities, as well as the deep brain, suggesting that the sensors might meet many needs in clinical medicine.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kang, Seung-Kyun -- Murphy, Rory K J -- Hwang, Suk-Won -- Lee, Seung Min -- Harburg, Daniel V -- Krueger, Neil A -- Shin, Jiho -- Gamble, Paul -- Cheng, Huanyu -- Yu, Sooyoun -- Liu, Zhuangjian -- McCall, Jordan G -- Stephen, Manu -- Ying, Hanze -- Kim, Jeonghyun -- Park, Gayoung -- Webb, R Chad -- Lee, Chi Hwan -- Chung, Sangjin -- Wie, Dae Seung -- Gujar, Amit D -- Vemulapalli, Bharat -- Kim, Albert H -- Lee, Kyung-Mi -- Cheng, Jianjun -- Huang, Younggang -- Lee, Sang Hoon -- Braun, Paul V -- Ray, Wilson Z -- Rogers, John A -- F31MH101956/MH/NIMH NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Feb 4;530(7588):71-6. doi: 10.1038/nature16492. Epub 2016 Jan 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA. ; Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA. ; Department of Neurological Surgery, Washington University School of Medicine, St Louis, Missouri 63110, USA. ; KU-KIST Graduate School of Converging Science and Technology, Korea University, Seoul 136-701, Republic of Korea. ; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA. ; Department of Engineering Science and Mechanics, Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, USA. ; Institute of High Performance Computing, Singapore 138632, Singapore. ; Department of Anesthesiology, Washington University School of Medicine, St Louis, Missouri 63110, USA. ; Department of Biomicrosystem Technology, Korea University, Seoul 136-701, South Korea. ; Department of Biochemistry and Molecular Biology, Korea University College of Medicine, Seoul 136-713, South Korea. ; Weldon School of Biomedical Engineering, School of Mechanical Engineering, The Center for Implantable Devices, Birck Nanotechnology Center, Purdue University, West Lafayette, Indiana 47907, USA. ; School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA. ; Department of Mechanical Engineering, Civil and Environmental Engineering, Materials Science and Engineering, and Skin Disease Research Center, Northwestern University, Evanston, Illinois 60208, USA. ; Department of Biomedical Engineering, College of Health Science, Korea University, Seoul 136-703, South Korea. ; Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26779949" target="_blank"〉PubMed〈/a〉
    Keywords: *Absorbable Implants/adverse effects ; Administration, Cutaneous ; Animals ; Body Temperature ; Brain/*metabolism/surgery ; Electronics/*instrumentation ; Equipment Design ; Hydrolysis ; Male ; Monitoring, Physiologic/adverse effects/*instrumentation ; Organ Specificity ; Pressure ; *Prostheses and Implants/adverse effects ; Rats ; Rats, Inbred Lew ; *Silicon ; Telemetry/instrumentation ; Wireless Technology/instrumentation
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  • 64
    Publication Date: 2016-01-28
    Description: Adeno-associated virus (AAV) vectors are currently the leading candidates for virus-based gene therapies because of their broad tissue tropism, non-pathogenic nature and low immunogenicity. They have been successfully used in clinical trials to treat hereditary diseases such as haemophilia B (ref. 2), and have been approved for treatment of lipoprotein lipase deficiency in Europe. Considerable efforts have been made to engineer AAV variants with novel and biomedically valuable cell tropisms to allow efficacious systemic administration, yet basic aspects of AAV cellular entry are still poorly understood. In particular, the protein receptor(s) required for AAV entry after cell attachment remains unknown. Here we use an unbiased genetic screen to identify proteins essential for AAV serotype 2 (AAV2) infection in a haploid human cell line. The most significantly enriched gene of the screen encodes a previously uncharacterized type I transmembrane protein, KIAA0319L (denoted hereafter as AAV receptor (AAVR)). We characterize AAVR as a protein capable of rapid endocytosis from the plasma membrane and trafficking to the trans-Golgi network. We show that AAVR directly binds to AAV2 particles, and that anti-AAVR antibodies efficiently block AAV2 infection. Moreover, genetic ablation of AAVR renders a wide range of mammalian cell types highly resistant to AAV2 infection. Notably, AAVR serves as a critical host factor for all tested AAV serotypes. The importance of AAVR for in vivo gene delivery is further highlighted by the robust resistance of Aavr(-/-) (also known as Au040320(-/-) and Kiaa0319l(-/-)) mice to AAV infection. Collectively, our data indicate that AAVR is a universal receptor involved in AAV infection.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pillay, S -- Meyer, N L -- Puschnik, A S -- Davulcu, O -- Diep, J -- Ishikawa, Y -- Jae, L T -- Wosen, J E -- Nagamine, C M -- Chapman, M S -- Carette, J E -- DP2 AI104557/AI/NIAID NIH HHS/ -- R01 GM066875/GM/NIGMS NIH HHS/ -- U19 AI109662/AI/NIAID NIH HHS/ -- England -- Nature. 2016 Feb 4;530(7588):108-12. doi: 10.1038/nature16465. Epub 2016 Jan 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Immunology, Stanford University School of Medicine, 299 Campus Drive, Stanford, California 94305, USA. ; Department of Biochemistry and Molecular Biology, School of Medicine, Oregon Health &Science University, 3181 Sam Jackson Park Road, Portland, Oregon 97239-3098, USA. ; Shriners Hospital for Children, 3101 Sam Jackson Park Road, Portland, Oregon 97239, USA. ; Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, Netherlands. ; Department of Comparative Medicine, Stanford University School of Medicine, 287 Campus Drive, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26814968" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies/immunology/pharmacology ; Cell Line ; Dependovirus/classification/drug effects/*physiology ; Endocytosis/drug effects ; Female ; Gene Deletion ; Genetic Therapy/methods ; Host Specificity ; Humans ; Male ; Mice ; Parvoviridae Infections/*metabolism/*virology ; Receptors, Cell Surface/antagonists & inhibitors/deficiency/genetics/*metabolism ; Receptors, Virus/antagonists & inhibitors/deficiency/genetics/*metabolism ; *Viral Tropism/drug effects ; Virus Internalization/drug effects ; trans-Golgi Network/drug effects
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  • 65
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-05-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bender, Eric -- England -- Nature. 2016 May 11;533(7602):S62-4. doi: 10.1038/533S62a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27167394" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Amyotrophic Lateral Sclerosis/diagnosis ; *Awards and Prizes ; Biomedical Research/economics/*manpower/*methods ; Breast Neoplasms/diagnosis/pathology ; *Competitive Behavior ; Cooperative Behavior ; Crowdsourcing/economics/*methods ; Datasets as Topic ; Drug Industry/economics/methods ; Humans ; Information Dissemination ; *Interdisciplinary Communication ; Internet/utilization ; Male ; Models, Biological ; Monitoring, Physiologic/instrumentation ; Prognosis ; Reproducibility of Results ; Smartphone/utilization ; Statistics as Topic ; Systems Biology/manpower/methods ; Time Factors
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  • 66
    Publication Date: 2016-03-05
    Description: How does an animal know where it is when it stops moving? Hippocampal place cells fire at discrete locations as subjects traverse space, thereby providing an explicit neural code for current location during locomotion. In contrast, during awake immobility, the hippocampus is thought to be dominated by neural firing representing past and possible future experience. The question of whether and how the hippocampus constructs a representation of current location in the absence of locomotion has been unresolved. Here we report that a distinct population of hippocampal neurons, located in the CA2 subregion, signals current location during immobility, and does so in association with a previously unidentified hippocampus-wide network pattern. In addition, signalling of location persists into brief periods of desynchronization prevalent in slow-wave sleep. The hippocampus thus generates a distinct representation of current location during immobility, pointing to mnemonic processing specific to experience occurring in the absence of locomotion.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kay, Kenneth -- Sosa, Marielena -- Chung, Jason E -- Karlsson, Mattias P -- Larkin, Margaret C -- Frank, Loren M -- R01 MH090188/MH/NIMH NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Mar 10;531(7593):185-90. doi: 10.1038/nature17144. Epub 2016 Mar 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉UCSF Center for Integrative Neuroscience and Department of Physiology, University of California San Francisco, California 94158, USA. ; Howard Hughes Medical Institute, University of California San Francisco, California 94158, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26934224" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Hippocampus/anatomy & histology/*cytology/*physiology ; Male ; Models, Neurological ; Movement ; Neurons/*physiology ; Orientation/*physiology ; Rats ; Rats, Long-Evans ; Sleep/*physiology ; Space Perception/*physiology ; Spatial Memory/physiology
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  • 67
    Publication Date: 2016-01-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Betsholtz, Christer -- England -- Nature. 2016 Jan 14;529(7585):160-1. doi: 10.1038/nature16866. Epub 2016 Jan 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology, Genetics and Pathology at Uppsala University, and the Department of Medical Biochemistry and Biophysics at the Karolinska Institutet, Stockholm, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26735011" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Endothelium, Vascular/*growth & development/*metabolism ; Female ; Forkhead Transcription Factors/*metabolism ; Humans ; Male
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  • 68
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-03-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McGilvray, Annabel -- England -- Nature. 2016 Mar 3;531(7592):S4-5. doi: 10.1038/531S4a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26934524" target="_blank"〉PubMed〈/a〉
    Keywords: Acetates/pharmacology/therapeutic use ; Aging/blood/drug effects/pathology/*psychology ; Alzheimer Disease/blood/therapy ; Animals ; Anti-Asthmatic Agents/pharmacology/therapeutic use ; Cognition Disorders/pathology/physiopathology/*prevention & control/*therapy ; Estrogens/pharmacology ; Female ; Hippocampus/drug effects/pathology/physiology/physiopathology ; Humans ; Inflammation Mediators/immunology ; Leukotrienes/immunology ; Macaca mulatta ; Male ; Mice ; Neuronal Plasticity/drug effects ; Parkinson Disease/therapy ; Plasma/chemistry/physiology ; Prefrontal Cortex/drug effects/pathology/physiology/physiopathology ; Quinolines/pharmacology/therapeutic use ; Rats ; Rejuvenation/*physiology/*psychology ; Synapses/drug effects/metabolism/pathology
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  • 69
    Publication Date: 2016-04-21
    Description: Our current understanding of immunology was largely defined in laboratory mice, partly because they are inbred and genetically homogeneous, can be genetically manipulated, allow kinetic tissue analyses to be carried out from the onset of disease, and permit the use of tractable disease models. Comparably reductionist experiments are neither technically nor ethically possible in humans. However, there is growing concern that laboratory mice do not reflect relevant aspects of the human immune system, which may account for failures to translate disease treatments from bench to bedside. Laboratory mice live in abnormally hygienic specific pathogen free (SPF) barrier facilities. Here we show that standard laboratory mouse husbandry has profound effects on the immune system and that environmental changes produce mice with immune systems closer to those of adult humans. Laboratory mice--like newborn, but not adult, humans--lack effector-differentiated and mucosally distributed memory T cells. These cell populations were present in free-living barn populations of feral mice and pet store mice with diverse microbial experience, and were induced in laboratory mice after co-housing with pet store mice, suggesting that the environment is involved in the induction of these cells. Altering the living conditions of mice profoundly affected the cellular composition of the innate and adaptive immune systems, resulted in global changes in blood cell gene expression to patterns that more closely reflected the immune signatures of adult humans rather than neonates, altered resistance to infection, and influenced T-cell differentiation in response to a de novo viral infection. These data highlight the effects of environment on the basal immune state and response to infection and suggest that restoring physiological microbial exposure in laboratory mice could provide a relevant tool for modelling immunological events in free-living organisms, including humans.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4871315/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4871315/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Beura, Lalit K -- Hamilton, Sara E -- Bi, Kevin -- Schenkel, Jason M -- Odumade, Oludare A -- Casey, Kerry A -- Thompson, Emily A -- Fraser, Kathryn A -- Rosato, Pamela C -- Filali-Mouhim, Ali -- Sekaly, Rafick P -- Jenkins, Marc K -- Vezys, Vaiva -- Haining, W Nicholas -- Jameson, Stephen C -- Masopust, David -- 1R01AI111671/AI/NIAID NIH HHS/ -- R01 AI075168/AI/NIAID NIH HHS/ -- R01 AI084913/AI/NIAID NIH HHS/ -- R01 AI111671/AI/NIAID NIH HHS/ -- R01 AI116678/AI/NIAID NIH HHS/ -- R01AI075168/AI/NIAID NIH HHS/ -- R01AI084913/AI/NIAID NIH HHS/ -- R01AI116678/AI/NIAID NIH HHS/ -- England -- Nature. 2016 Apr 28;532(7600):512-6. doi: 10.1038/nature17655. Epub 2016 Apr 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Immunology, Department of Microbiology and Immunology, University of Minnesota, Minneapolis, Minnesota 55414, USA. ; Center for Immunology, Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, Minnesota 55414, USA. ; Department of Pediatric Oncology, Dana-Farber Cancer Institute, and Pediatric Hematology and Oncology, Children's Hospital, Boston, Massachusetts 02115, USA. ; Department of Pathology, Case Western Reserve University, Cleveland, Ohio 44106, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27096360" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Animal Husbandry/*methods ; Animals ; Animals, Laboratory/*immunology ; Animals, Wild/*immunology ; Cell Differentiation ; *Environment ; Environmental Exposure ; Female ; Humans ; Immune System/*immunology ; Immunity/*immunology ; Immunity, Innate/immunology ; Immunologic Memory ; Infant, Newborn ; Male ; Mice ; *Models, Animal ; Phenotype ; Specific Pathogen-Free Organisms ; T-Lymphocytes/cytology/immunology ; Virus Diseases/immunology/virology
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  • 70
    Publication Date: 2016-03-05
    Description: Little is known about how pro-obesity diets regulate tissue stem and progenitor cell function. Here we show that high-fat diet (HFD)-induced obesity augments the numbers and function of Lgr5(+) intestinal stem cells of the mammalian intestine. Mechanistically, a HFD induces a robust peroxisome proliferator-activated receptor delta (PPAR-delta) signature in intestinal stem cells and progenitor cells (non-intestinal stem cells), and pharmacological activation of PPAR-delta recapitulates the effects of a HFD on these cells. Like a HFD, ex vivo treatment of intestinal organoid cultures with fatty acid constituents of the HFD enhances the self-renewal potential of these organoid bodies in a PPAR-delta-dependent manner. Notably, HFD- and agonist-activated PPAR-delta signalling endow organoid-initiating capacity to progenitors, and enforced PPAR-delta signalling permits these progenitors to form in vivo tumours after loss of the tumour suppressor Apc. These findings highlight how diet-modulated PPAR-delta activation alters not only the function of intestinal stem and progenitor cells, but also their capacity to initiate tumours.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4846772/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4846772/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Beyaz, Semir -- Mana, Miyeko D -- Roper, Jatin -- Kedrin, Dmitriy -- Saadatpour, Assieh -- Hong, Sue-Jean -- Bauer-Rowe, Khristian E -- Xifaras, Michael E -- Akkad, Adam -- Arias, Erika -- Pinello, Luca -- Katz, Yarden -- Shinagare, Shweta -- Abu-Remaileh, Monther -- Mihaylova, Maria M -- Lamming, Dudley W -- Dogum, Rizkullah -- Guo, Guoji -- Bell, George W -- Selig, Martin -- Nielsen, G Petur -- Gupta, Nitin -- Ferrone, Cristina R -- Deshpande, Vikram -- Yuan, Guo-Cheng -- Orkin, Stuart H -- Sabatini, David M -- Yilmaz, Omer H -- AI47389/AI/NIAID NIH HHS/ -- DK043351/DK/NIDDK NIH HHS/ -- K08 CA198002/CA/NCI NIH HHS/ -- K99 AG041765/AG/NIA NIH HHS/ -- K99 AG045144/AG/NIA NIH HHS/ -- P30 CA014051/CA/NCI NIH HHS/ -- P30-CA14051/CA/NCI NIH HHS/ -- R00 AG041765/AG/NIA NIH HHS/ -- R00 AG045144/AG/NIA NIH HHS/ -- R01 AI047389/AI/NIAID NIH HHS/ -- R01 CA103866/CA/NCI NIH HHS/ -- R01 CA129105/CA/NCI NIH HHS/ -- R37 AI047389/AI/NIAID NIH HHS/ -- T32DK007191/DK/NIDDK NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Mar 3;531(7592):53-8. doi: 10.1038/nature17173.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The David H. Koch Institute for Integrative Cancer Research at MIT, Department of Biology, MIT, Cambridge, Massachusetts 02139, USA. ; Division of Hematology/Oncology, Boston Children's Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute, Howard Hughes Medical Institute, Harvard Stem Cell Institute, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Division of Gastroenterology and Molecular Oncology Research Institute, Tufts Medical Center, Boston, Massachusetts 02111, USA. ; Departments of Pathology, Gastroenterology, and Surgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA. ; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02115, USA. ; Whitehead Institute for Biomedical Research, Howard Hughes Medical Institute, Department of Biology, MIT, Cambridge, Massachusetts 02142, USA. ; Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA. ; Department of Medicine, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA. ; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Missisippi 39216, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26935695" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Count ; Cell Self Renewal/drug effects ; Cell Transformation, Neoplastic/*drug effects ; Colonic Neoplasms/*pathology ; Diet, High-Fat/*adverse effects ; Female ; Genes, APC ; Humans ; Intestines/*pathology ; Male ; Mice ; Obesity/chemically induced/pathology ; Organoids/drug effects/metabolism/pathology ; PPAR delta/metabolism ; Signal Transduction/drug effects ; Stem Cell Niche/drug effects ; Stem Cells/*drug effects/metabolism/*pathology ; beta Catenin/metabolism
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  • 71
    Publication Date: 2016-04-21
    Description: Planktonic organisms play crucial roles in oceanic food webs and global biogeochemical cycles. Most of our knowledge about the ecological impact of large zooplankton stems from research on abundant and robust crustaceans, and in particular copepods. A number of the other organisms that comprise planktonic communities are fragile, and therefore hard to sample and quantify, meaning that their abundances and effects on oceanic ecosystems are poorly understood. Here, using data from a worldwide in situ imaging survey of plankton larger than 600 mum, we show that a substantial part of the biomass of this size fraction consists of giant protists belonging to the Rhizaria, a super-group of mostly fragile unicellular marine organisms that includes the taxa Phaeodaria and Radiolaria (for example, orders Collodaria and Acantharia). Globally, we estimate that rhizarians in the top 200 m of world oceans represent a standing stock of 0.089 Pg carbon, equivalent to 5.2% of the total oceanic biota carbon reservoir. In the vast oligotrophic intertropical open oceans, rhizarian biomass is estimated to be equivalent to that of all other mesozooplankton (plankton in the size range 0.2-20 mm). The photosymbiotic association of many rhizarians with microalgae may be an important factor in explaining their distribution. The previously overlooked importance of these giant protists across the widest ecosystem on the planet changes our understanding of marine planktonic ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Biard, Tristan -- Stemmann, Lars -- Picheral, Marc -- Mayot, Nicolas -- Vandromme, Pieter -- Hauss, Helena -- Gorsky, Gabriel -- Guidi, Lionel -- Kiko, Rainer -- Not, Fabrice -- England -- Nature. 2016 Apr 28;532(7600):504-7. doi: 10.1038/nature17652. Epub 2016 Apr 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Sorbonne Universites, UPMC Universite Paris 06, CNRS, Laboratoire Adaptation et Diversite en Milieu Marin UMR7144, Station Biologique de Roscoff, 29688 Roscoff, France. ; Sorbonne Universites, UPMC Universite Paris 06, CNRS, Laboratoire d'Oceanographie de Villefranche (LOV) UMR7093, Observatoire Oceanologique, 06230 Villefranche-sur-Mer, France. ; GEOMAR Helmholtz Centre for Ocean Research Kiel, Wischhofstrasse 1-3, 24148 Kiel, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27096373" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biomass ; *Biota ; Carbon/metabolism ; Carbon Sequestration ; Earth (Planet) ; Microalgae/metabolism ; *Oceans and Seas ; Photosynthesis ; Rhizaria/classification/*isolation & purification/metabolism ; Seawater/chemistry ; Symbiosis ; Zooplankton/classification/*isolation & purification/metabolism
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  • 72
    Publication Date: 2016-02-11
    Description: Since the origins of agriculture, the scale of human cooperation and societal complexity has dramatically expanded. This fact challenges standard evolutionary explanations of prosociality because well-studied mechanisms of cooperation based on genetic relatedness, reciprocity and partner choice falter as people increasingly engage in fleeting transactions with genetically unrelated strangers in large anonymous groups. To explain this rapid expansion of prosociality, researchers have proposed several mechanisms. Here we focus on one key hypothesis: cognitive representations of gods as increasingly knowledgeable and punitive, and who sanction violators of interpersonal social norms, foster and sustain the expansion of cooperation, trust and fairness towards co-religionist strangers. We tested this hypothesis using extensive ethnographic interviews and two behavioural games designed to measure impartial rule-following among people (n = 591, observations = 35,400) from eight diverse communities from around the world: (1) inland Tanna, Vanuatu; (2) coastal Tanna, Vanuatu; (3) Yasawa, Fiji; (4) Lovu, Fiji; (5) Pesqueiro, Brazil; (6) Pointe aux Piments, Mauritius; (7) the Tyva Republic (Siberia), Russia; and (8) Hadzaland, Tanzania. Participants reported adherence to a wide array of world religious traditions including Christianity, Hinduism and Buddhism, as well as notably diverse local traditions, including animism and ancestor worship. Holding a range of relevant variables constant, the higher participants rated their moralistic gods as punitive and knowledgeable about human thoughts and actions, the more coins they allocated to geographically distant co-religionist strangers relative to both themselves and local co-religionists. Our results support the hypothesis that beliefs in moralistic, punitive and knowing gods increase impartial behaviour towards distant co-religionists, and therefore can contribute to the expansion of prosociality.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Purzycki, Benjamin Grant -- Apicella, Coren -- Atkinson, Quentin D -- Cohen, Emma -- McNamara, Rita Anne -- Willard, Aiyana K -- Xygalatas, Dimitris -- Norenzayan, Ara -- Henrich, Joseph -- England -- Nature. 2016 Feb 18;530(7590):327-30. doi: 10.1038/nature16980. Epub 2016 Feb 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Human Evolution, Cognition, and Culture, University of British Columbia, 1871 West Mall, Vancouver, British Columbia V6T 1Z2, Canada. ; Department of Psychology, University of Pennsylvania, Solomon Laboratories, 3720 Walnut Street, Philadelphia, Pennsylvania 19104-6241, USA. ; Department of Psychology, University of Auckland, Human Sciences Building, 10 Symonds Street, Auckland 1010, New Zealand. ; Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, D-07745 Jena, Germany. ; Institute of Cognitive and Evolutionary Anthropology, University of Oxford, 64 Banbury Road, Oxford OX2 6PN, UK. ; Wadham College, University of Oxford, Parks Road, Oxford, OX1 3PN, UK. ; Department of Psychology, University of British Columbia, 2136 West Mall, Vancouver, British Columbia V6T 1Z4, Canada. ; Culture, and Development Laboratory, Department of Psychology, The University of Texas at Austin, 1 University Station #A8000, Austin, Texas 78712-0187, USA. ; Department of Anthropology, University of Connecticut, 354 Mansfield Road, Unit 1176, Storrs, Connecticut 06029, USA. ; Interacting Minds Centre, Aarhus University, Jens Chr. Skous Vej 4, building 1483, DK-8000, Aarhus, Denmark. ; LEVYNA, Masaryk University, Brno 60200, Czech Republic. ; Department of Economics, University of British Columbia, 2136 West Mall, Vancouver, British Columbia V6T 1Z4, Canada. ; Department of Human Evolutionary Biology, Harvard University, 11 Divinity Ave, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26863190" target="_blank"〉PubMed〈/a〉
    Keywords: Altruism ; *Cooperative Behavior ; Ethnic Groups/psychology ; Female ; Games, Experimental ; Humans ; Internationality ; *Interpersonal Relations ; Interviews as Topic ; Logistic Models ; Male ; *Morals ; Odds Ratio ; Punishment/*psychology ; Random Allocation ; *Religion and Psychology ; Trust
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  • 73
    Publication Date: 2016-03-16
    Description: A unique assemblage of 28 hominin individuals, found in Sima de los Huesos in the Sierra de Atapuerca in Spain, has recently been dated to approximately 430,000 years ago. An interesting question is how these Middle Pleistocene hominins were related to those who lived in the Late Pleistocene epoch, in particular to Neanderthals in western Eurasia and to Denisovans, a sister group of Neanderthals so far known only from southern Siberia. While the Sima de los Huesos hominins share some derived morphological features with Neanderthals, the mitochondrial genome retrieved from one individual from Sima de los Huesos is more closely related to the mitochondrial DNA of Denisovans than to that of Neanderthals. However, since the mitochondrial DNA does not reveal the full picture of relationships among populations, we have investigated DNA preservation in several individuals found at Sima de los Huesos. Here we recover nuclear DNA sequences from two specimens, which show that the Sima de los Huesos hominins were related to Neanderthals rather than to Denisovans, indicating that the population divergence between Neanderthals and Denisovans predates 430,000 years ago. A mitochondrial DNA recovered from one of the specimens shares the previously described relationship to Denisovan mitochondrial DNAs, suggesting, among other possibilities, that the mitochondrial DNA gene pool of Neanderthals turned over later in their history.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Meyer, Matthias -- Arsuaga, Juan-Luis -- de Filippo, Cesare -- Nagel, Sarah -- Aximu-Petri, Ayinuer -- Nickel, Birgit -- Martinez, Ignacio -- Gracia, Ana -- Bermudez de Castro, Jose Maria -- Carbonell, Eudald -- Viola, Bence -- Kelso, Janet -- Prufer, Kay -- Paabo, Svante -- England -- Nature. 2016 Mar 24;531(7595):504-7. doi: 10.1038/nature17405. Epub 2016 Mar 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany. ; Centro de Investigacion Sobre la Evolucion y Comportamiento Humanos, Universidad Complutense de Madrid-Instituto de Salud Carlos III, 28029 Madrid, Spain. ; Departamento de Paleontologia, Facultad de Ciencias Geologicas, Universidad Complutense de Madrid, 28040 Madrid, Spain. ; Area de Paleontologia, Departamento de Geografia y Geologia, Universidad de Alcala, Alcala de Henares, 28871 Madrid, Spain. ; Centro Nacional de Investigacion sobre la Evolucion Humana, Paseo Sierra de Atapuerca, 09002 Burgos, Spain. ; Institut Catala de Paleoecologia Humana i Evolucio Social, C/Marcel.li Domingo s/n (Edifici W3), Campus Sescelades, 43007 Tarragona, Spain. ; Area de Prehistoria, Departament d'Historia i Historia de l'Art, Universitat Rovira i Virgili, Facultat de Lletres, Avinguda de Catalunya, 35, 43002 Tarragona, Spain. ; Department of Anthropology, University of Toronto, 19 Russell Street, Toronto, Ontario M5S 2S2, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26976447" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; DNA, Mitochondrial/genetics ; Fossils ; Genome, Mitochondrial/genetics ; Hominidae/classification/*genetics ; Male ; Neanderthals/classification/genetics ; *Phylogeny ; Sequence Alignment ; Spain
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  • 74
    Publication Date: 2016-03-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bolkan, Scott -- Gordon, Joshua A -- England -- Nature. 2016 Apr 7;532(7597):45-6. doi: 10.1038/nature17311. Epub 2016 Mar 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neuroscience, Columbia University, New York, New York 10032, USA. ; Department of Psychiatry, Columbia University.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27007842" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Attention Deficit Disorder with Hyperactivity/*physiopathology/*psychology ; Female ; *Gene Deletion ; Humans ; Male ; Membrane Proteins/*deficiency/*genetics ; Thalamic Nuclei/*physiopathology
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  • 75
    Publication Date: 2016-03-17
    Description: The energetic burden of continuously concentrating solutes against gradients along the tubule may render the kidney especially vulnerable to ischaemia. Acute kidney injury (AKI) affects 3% of all hospitalized patients. Here we show that the mitochondrial biogenesis regulator, PGC1alpha, is a pivotal determinant of renal recovery from injury by regulating nicotinamide adenine dinucleotide (NAD) biosynthesis. Following renal ischaemia, Pgc1alpha(-/-) (also known as Ppargc1a(-/-)) mice develop local deficiency of the NAD precursor niacinamide (NAM, also known as nicotinamide), marked fat accumulation, and failure to re-establish normal function. Notably, exogenous NAM improves local NAD levels, fat accumulation, and renal function in post-ischaemic Pgc1alpha(-/-) mice. Inducible tubular transgenic mice (iNephPGC1alpha) recapitulate the effects of NAM supplementation, including more local NAD and less fat accumulation with better renal function after ischaemia. PGC1alpha coordinately upregulates the enzymes that synthesize NAD de novo from amino acids whereas PGC1alpha deficiency or AKI attenuates the de novo pathway. NAM enhances NAD via the enzyme NAMPT and augments production of the fat breakdown product beta-hydroxybutyrate, leading to increased production of prostaglandin PGE2 (ref. 5), a secreted autacoid that maintains renal function. NAM treatment reverses established ischaemic AKI and also prevented AKI in an unrelated toxic model. Inhibition of beta-hydroxybutyrate signalling or prostaglandin production similarly abolishes PGC1alpha-dependent renoprotection. Given the importance of mitochondrial health in ageing and the function of metabolically active organs, the results implicate NAM and NAD as key effectors for achieving PGC1alpha-dependent stress resistance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tran, Mei T -- Zsengeller, Zsuzsanna K -- Berg, Anders H -- Khankin, Eliyahu V -- Bhasin, Manoj K -- Kim, Wondong -- Clish, Clary B -- Stillman, Isaac E -- Karumanchi, S Ananth -- Rhee, Eugene P -- Parikh, Samir M -- K08-DK090142/DK/NIDDK NIH HHS/ -- K08-DK101560/DK/NIDDK NIH HHS/ -- P30-DK079337/DK/NIDDK NIH HHS/ -- R01 DK095072/DK/NIDDK NIH HHS/ -- R01-DK095072/DK/NIDDK NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Mar 24;531(7595):528-32. doi: 10.1038/nature17184. Epub 2016 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Nephrology and Department of Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215, USA. ; Center for Vascular Biology Research, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215, USA. ; Division of Clinical Chemistry, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215, USA. ; Department of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215, USA. ; Bioinformatics and Systems Biology Core, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02215, USA. ; Nephrology and Endocrine Divisions, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA. ; Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02139, USA. ; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26982719" target="_blank"〉PubMed〈/a〉
    Keywords: 3-Hydroxybutyric Acid/metabolism ; Acute Kidney Injury/drug therapy/*metabolism ; Adipose Tissue/drug effects/metabolism ; Amino Acids/metabolism ; Animals ; Cytokines/metabolism ; Dinoprostone/biosynthesis/metabolism ; Humans ; Ischemia/drug therapy/metabolism ; Kidney/drug effects/*metabolism/physiology/physiopathology ; Male ; Mice ; Mice, Inbred C57BL ; Mitochondria/metabolism ; NAD/*biosynthesis ; Niacinamide/deficiency/pharmacology/therapeutic use ; Nicotinamide Phosphoribosyltransferase/metabolism ; Oxidation-Reduction ; Signal Transduction/drug effects ; Stress, Physiological ; Transcription Factors/deficiency/*metabolism
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  • 76
    Publication Date: 2016-02-11
    Description: The biological carbon pump is the process by which CO2 is transformed to organic carbon via photosynthesis, exported through sinking particles, and finally sequestered in the deep ocean. While the intensity of the pump correlates with plankton community composition, the underlying ecosystem structure driving the process remains largely uncharacterized. Here we use environmental and metagenomic data gathered during the Tara Oceans expedition to improve our understanding of carbon export in the oligotrophic ocean. We show that specific plankton communities, from the surface and deep chlorophyll maximum, correlate with carbon export at 150 m and highlight unexpected taxa such as Radiolaria and alveolate parasites, as well as Synechococcus and their phages, as lineages most strongly associated with carbon export in the subtropical, nutrient-depleted, oligotrophic ocean. Additionally, we show that the relative abundance of a few bacterial and viral genes can predict a significant fraction of the variability in carbon export in these regions.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4851848/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4851848/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Guidi, Lionel -- Chaffron, Samuel -- Bittner, Lucie -- Eveillard, Damien -- Larhlimi, Abdelhalim -- Roux, Simon -- Darzi, Youssef -- Audic, Stephane -- Berline, Leo -- Brum, Jennifer R -- Coelho, Luis Pedro -- Espinoza, Julio Cesar Ignacio -- Malviya, Shruti -- Sunagawa, Shinichi -- Dimier, Celine -- Kandels-Lewis, Stefanie -- Picheral, Marc -- Poulain, Julie -- Searson, Sarah -- Tara Oceans Consortium Coordinators -- Stemmann, Lars -- Not, Fabrice -- Hingamp, Pascal -- Speich, Sabrina -- Follows, Mick -- Karp-Boss, Lee -- Boss, Emmanuel -- Ogata, Hiroyuki -- Pesant, Stephane -- Weissenbach, Jean -- Wincker, Patrick -- Acinas, Silvia G -- Bork, Peer -- de Vargas, Colomban -- Iudicone, Daniele -- Sullivan, Matthew B -- Raes, Jeroen -- Karsenti, Eric -- Bowler, Chris -- Gorsky, Gabriel -- England -- Nature. 2016 Apr 28;532(7600):465-70. doi: 10.1038/nature16942. Epub 2016 Feb 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Sorbonne Universites, UPMC Universite Paris 06, CNRS, Laboratoire d'oceanographie de Villefranche (LOV), Observatoire Oceanologique, 06230 Villefranche-sur-Mer, France. ; Department of Oceanography, University of Hawaii, Honolulu, Hawaii 96822, USA. ; Department of Microbiology and Immunology, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium. ; Center for the Biology of Disease, VIB, Herestraat 49, 3000 Leuven, Belgium. ; Department of Applied Biological Sciences, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium. ; Sorbonne Universites, UPMC Univ Paris 06, CNRS, Institut de Biologie Paris-Seine (IBPS), Evolution Paris Seine, F-75005, Paris, France. ; Ecole Normale Superieure, PSL Research University, Institut de Biologie de l'Ecole Normale Superieure (IBENS), CNRS UMR 8197, INSERM U1024, 46 rue d'Ulm, F-75005 Paris, France. ; Sorbonne Universites, UPMC Universite Paris 06, CNRS, Laboratoire Adaptation et Diversite en Milieu Marin, Station Biologique de Roscoff, 29680 Roscoff, France. ; LINA UMR 6241, Universite de Nantes, EMN, CNRS, 44322 Nantes, France. ; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA. ; Structural and Computational Biology, European Molecular Biology Laboratory, Meyerhofstr. 1, 69117 Heidelberg, Germany. ; Directors' Research European Molecular Biology Laboratory Meyerhofstr. 1, 69117 Heidelberg, Germany. ; CEA - Institut de Genomique, GENOSCOPE, 2 rue Gaston Cremieux, 91057 Evry, France. ; Aix Marseille Universite, CNRS, IGS, UMR 7256, 13288 Marseille, France. ; Department of Geosciences, Laboratoire de Meteorologie Dynamique (LMD), Ecole Normale Superieure, 24 rue Lhomond, 75231 Paris CEDEX 05, France. ; Dept of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA. ; School of Marine Sciences, University of Maine, Orono, Maine 04469, USA. ; Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan. ; PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen, 28359 Bremen, Germany. ; MARUM, Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany. ; CNRS, UMR 8030, CP 5706 Evry, France. ; Universite d'Evry, UMR 8030, CP 5706 Evry, France. ; Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM)-CSIC, Pg. Maritim de la Barceloneta 37-49, Barcelona E0800, Spain. ; Max-Delbruck-Centre for Molecular Medicine, 13092 Berlin, Germany. ; Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26863193" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/genetics/isolation & purification/*metabolism ; Carbon/*metabolism ; Chlorophyll/metabolism ; Dinoflagellida/genetics/isolation & purification/metabolism ; *Ecosystem ; Expeditions ; Genes, Bacterial ; Genes, Viral ; Geography ; Oceans and Seas ; Photosynthesis ; Plankton/genetics/isolation & purification/*metabolism ; Seawater/*chemistry/microbiology/parasitology ; Synechococcus/genetics/isolation & purification/metabolism/virology
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  • 77
    Publication Date: 2016-04-12
    Description: Asymmetric cell division, the partitioning of cellular components in response to polarizing cues during mitosis, has roles in differentiation and development. It is important for the self-renewal of fertilized zygotes in Caenorhabditis elegans and neuroblasts in Drosophila, and in the development of mammalian nervous and digestive systems. T lymphocytes, upon activation by antigen-presenting cells (APCs), can undergo asymmetric cell division, wherein the daughter cell proximal to the APC is more likely to differentiate into an effector-like T cell and the distal daughter is more likely to differentiate into a memory-like T cell. Upon activation and before cell division, expression of the transcription factor c-Myc drives metabolic reprogramming, necessary for the subsequent proliferative burst. Here we find that during the first division of an activated T cell in mice, c-Myc can sort asymmetrically. Asymmetric distribution of amino acid transporters, amino acid content, and activity of mammalian target of rapamycin complex 1 (mTORC1) is correlated with c-Myc expression, and both amino acids and mTORC1 activity sustain the differences in c-Myc expression in one daughter cell compared to the other. Asymmetric c-Myc levels in daughter T cells affect proliferation, metabolism, and differentiation, and these effects are altered by experimental manipulation of mTORC1 activity or c-Myc expression. Therefore, metabolic signalling pathways cooperate with transcription programs to maintain differential cell fates following asymmetric T-cell division.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4851250/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4851250/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Verbist, Katherine C -- Guy, Cliff S -- Milasta, Sandra -- Liedmann, Swantje -- Kaminski, Marcin M -- Wang, Ruoning -- Green, Douglas R -- R01 GM096208/GM/NIGMS NIH HHS/ -- R37 GM052735/GM/NIGMS NIH HHS/ -- England -- Nature. 2016 Apr 21;532(7599):389-93. doi: 10.1038/nature17442. Epub 2016 Apr 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105, USA. ; Center for Childhood Cancer and Blood Disease, The Research Institute at Nationwide Children's Hospital, Columbus, Ohio 43205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27064903" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Transport Systems/metabolism ; Amino Acids/metabolism ; Animals ; CD8-Positive T-Lymphocytes/*cytology/*metabolism ; Cell Differentiation/genetics ; *Cell Division ; *Cell Polarity/genetics ; Female ; *Lymphocyte Activation ; Male ; Mice ; Multiprotein Complexes/metabolism ; Proto-Oncogene Proteins c-myc/genetics/metabolism ; Signal Transduction/genetics ; TOR Serine-Threonine Kinases/metabolism ; Transcription, Genetic
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  • 78
    Publication Date: 2016-01-14
    Description: The myelin sheaths wrapped around axons by oligodendrocytes are crucial for brain function. In ischaemia myelin is damaged in a Ca(2+)-dependent manner, abolishing action potential propagation. This has been attributed to glutamate release activating Ca(2+)-permeable N-methyl-D-aspartate (NMDA) receptors. Surprisingly, we now show that NMDA does not raise the intracellular Ca(2+) concentration ([Ca(2+)]i) in mature oligodendrocytes and that, although ischaemia evokes a glutamate-triggered membrane current, this is generated by a rise of extracellular [K(+)] and decrease of membrane K(+) conductance. Nevertheless, ischaemia raises oligodendrocyte [Ca(2+)]i, [Mg(2+)]i and [H(+)]i, and buffering intracellular pH reduces the [Ca(2+)]i and [Mg(2+)]i increases, showing that these are evoked by the rise of [H(+)]i. The H(+)-gated [Ca(2+)]i elevation is mediated by channels with characteristics of TRPA1, being inhibited by ruthenium red, isopentenyl pyrophosphate, HC-030031, A967079 or TRPA1 knockout. TRPA1 block reduces myelin damage in ischaemia. These data suggest that TRPA1-containing ion channels could be a therapeutic target in white matter ischaemia.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733665/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733665/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hamilton, Nicola B -- Kolodziejczyk, Karolina -- Kougioumtzidou, Eleni -- Attwell, David -- Wellcome Trust/United Kingdom -- England -- Nature. 2016 Jan 28;529(7587):523-7. doi: 10.1038/nature16519. Epub 2016 Jan 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neuroscience, Physiology &Pharmacology, University College London, Gower St., London WC1E 6BT, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26760212" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain Ischemia/*metabolism/*pathology ; Calcium/*metabolism ; Calcium Signaling/drug effects ; Electric Conductivity ; Female ; Hydrogen-Ion Concentration ; Magnesium/metabolism ; Male ; Mice ; Mice, Transgenic ; Multiple Sclerosis/metabolism/pathology ; Myelin Sheath/drug effects/*metabolism/*pathology ; N-Methylaspartate/metabolism/pharmacology ; Oligodendroglia/drug effects/metabolism/pathology ; Potassium/metabolism ; *Protons ; Rats ; Rats, Sprague-Dawley ; Receptors, N-Methyl-D-Aspartate/metabolism ; Stroke/metabolism/pathology ; Transient Receptor Potential Channels/antagonists & ; inhibitors/deficiency/genetics/*metabolism ; White Matter/metabolism/pathology
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  • 79
    Publication Date: 2016-01-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cyranoski, David -- England -- Nature. 2016 Jan 28;529(7587):449. doi: 10.1038/529449a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26819024" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Experimentation ; Animals ; Animals, Laboratory ; Autistic Disorder/*genetics/physiopathology/psychology ; CRISPR-Cas Systems ; China ; DNA Copy Number Variations/genetics ; Deep Brain Stimulation ; *Disease Models, Animal ; Female ; *Genetic Engineering ; Humans ; Japan ; Macaca fascicularis/*genetics/psychology ; Male ; Methyl-CpG-Binding Protein 2/genetics ; Monkey Diseases/*genetics/physiopathology/psychology ; Neuroimaging
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  • 80
    Publication Date: 2016-03-24
    Description: Instinctive reactions to danger are critical to the perpetuation of species and are observed throughout the animal kingdom. The scent of predators induces an instinctive fear response in mice that includes behavioural changes, as well as a surge in blood stress hormones that mobilizes multiple body systems to escape impending danger. How the olfactory system routes predator signals detected in the nose to achieve these effects is unknown. Here we identify a specific area of the olfactory cortex in mice that induces stress hormone responses to volatile predator odours. Using monosynaptic and polysynaptic viral tracers, we found that multiple olfactory cortical areas transmit signals to hypothalamic corticotropin-releasing hormone (CRH) neurons, which control stress hormone levels. However, only one minor cortical area, the amygdalo-piriform transition area (AmPir), contained neurons upstream of CRH neurons that were activated by volatile predator odours. Chemogenetic stimulation of AmPir activated CRH neurons and induced an increase in blood stress hormones, mimicking an instinctive fear response. Moreover, chemogenetic silencing of AmPir markedly reduced the stress hormone response to predator odours without affecting a fear behaviour. These findings suggest that AmPir, a small area comprising 〈5% of the olfactory cortex, plays a key part in the hormonal component of the instinctive fear response to volatile predator scents.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kondoh, Kunio -- Lu, Zhonghua -- Ye, Xiaolan -- Olson, David P -- Lowell, Bradford B -- Buck, Linda B -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Apr 7;532(7597):103-6. doi: 10.1038/nature17156. Epub 2016 Mar 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA. ; Division of Endocrinology, Diabetes and Metabolism, Department of Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27001694" target="_blank"〉PubMed〈/a〉
    Keywords: Adrenocorticotropic Hormone/blood ; Animals ; Corticosterone/blood ; Corticotropin-Releasing Hormone/blood/metabolism ; Escape Reaction ; Fear ; Female ; Hippocampus/cytology/physiology ; Hormones/blood/*metabolism ; Instinct ; Male ; Mice ; Neurons/metabolism ; Odors/*analysis ; Olfactory Cortex/*anatomy & histology/cytology/*physiology ; *Olfactory Pathways ; Olfactory Perception/physiology ; *Predatory Behavior ; Smell/*physiology ; *Stress, Psychological ; Telencephalon/anatomy & histology/cytology/physiology
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  • 81
    Publication Date: 2016-03-17
    Description: Plant respiration results in an annual flux of carbon dioxide (CO2) to the atmosphere that is six times as large as that due to the emissions from fossil fuel burning, so changes in either will impact future climate. As plant respiration responds positively to temperature, a warming world may result in additional respiratory CO2 release, and hence further atmospheric warming. Plant respiration can acclimate to altered temperatures, however, weakening the positive feedback of plant respiration to rising global air temperature, but a lack of evidence on long-term (weeks to years) acclimation to climate warming in field settings currently hinders realistic predictions of respiratory release of CO2 under future climatic conditions. Here we demonstrate strong acclimation of leaf respiration to both experimental warming and seasonal temperature variation for juveniles of ten North American tree species growing for several years in forest conditions. Plants grown and measured at 3.4 degrees C above ambient temperature increased leaf respiration by an average of 5% compared to plants grown and measured at ambient temperature; without acclimation, these increases would have been 23%. Thus, acclimation eliminated 80% of the expected increase in leaf respiration of non-acclimated plants. Acclimation of leaf respiration per degree temperature change was similar for experimental warming and seasonal temperature variation. Moreover, the observed increase in leaf respiration per degree increase in temperature was less than half as large as the average reported for previous studies, which were conducted largely over shorter time scales in laboratory settings. If such dampening effects of leaf thermal acclimation occur generally, the increase in respiration rates of terrestrial plants in response to climate warming may be less than predicted, and thus may not raise atmospheric CO2 concentrations as much as anticipated.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reich, Peter B -- Sendall, Kerrie M -- Stefanski, Artur -- Wei, Xiaorong -- Rich, Roy L -- Montgomery, Rebecca A -- England -- Nature. 2016 Mar 31;531(7596):633-6. doi: 10.1038/nature17142. Epub 2016 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Forest Resources, University of Minnesota, Minnesota 55108, USA. ; Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales 2753, Australia. ; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China. ; Smithsonian Environmental Research Center, Edgewater, Maryland 20137, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26982730" target="_blank"〉PubMed〈/a〉
    Keywords: *Acclimatization ; Atmosphere ; Carbon Dioxide/metabolism ; Cell Respiration ; Darkness ; *Ecosystem ; Forests ; *Global Warming ; North America ; Photosynthesis ; Plant Leaves/metabolism ; Seasons ; *Temperature ; Time Factors ; Trees/classification/*metabolism
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  • 82
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    Nature Publishing Group (NPG)
    Publication Date: 2016-02-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2016 Feb 11;530(7589):129-30. doi: 10.1038/530130a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26863944" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Disease Eradication/economics/*statistics & numerical data/*trends ; Dog Diseases/epidemiology/parasitology ; Dogs ; Dracunculiasis/*epidemiology/*parasitology/prevention & control/transmission ; *Dracunculus Nematode/isolation & purification ; Drinking Water/parasitology/standards ; Female ; Ghana/epidemiology ; Goals ; Malaria/epidemiology/parasitology/prevention & control/transmission ; Male ; Mosquito Control/methods ; Poliomyelitis/epidemiology ; Time Factors
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  • 83
    Publication Date: 2016-04-29
    Description: Umbilical cord blood-derived haematopoietic stem cells (HSCs) are essential for many life-saving regenerative therapies. However, despite their advantages for transplantation, their clinical use is restricted because HSCs in cord blood are found only in small numbers. Small molecules that enhance haematopoietic stem and progenitor cell (HSPC) expansion in culture have been identified, but in many cases their mechanisms of action or the nature of the pathways they impinge on are poorly understood. A greater understanding of the molecular circuitry that underpins the self-renewal of human HSCs will facilitate the development of targeted strategies that expand HSCs for regenerative therapies. Whereas transcription factor networks have been shown to influence the self-renewal and lineage decisions of human HSCs, the post-transcriptional mechanisms that guide HSC fate have not been closely investigated. Here we show that overexpression of the RNA-binding protein Musashi-2 (MSI2) induces multiple pro-self-renewal phenotypes, including a 17-fold increase in short-term repopulating cells and a net 23-fold ex vivo expansion of long-term repopulating HSCs. By performing a global analysis of MSI2-RNA interactions, we show that MSI2 directly attenuates aryl hydrocarbon receptor (AHR) signalling through post-transcriptional downregulation of canonical AHR pathway components in cord blood HSPCs. Our study gives mechanistic insight into RNA networks controlled by RNA-binding proteins that underlie self-renewal and provides evidence that manipulating such networks ex vivo can enhance the regenerative potential of human HSCs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4880456/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4880456/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rentas, Stefan -- Holzapfel, Nicholas T -- Belew, Muluken S -- Pratt, Gabriel A -- Voisin, Veronique -- Wilhelm, Brian T -- Bader, Gary D -- Yeo, Gene W -- Hope, Kristin J -- HG004659/HG/NHGRI NIH HHS/ -- MOP-126030/Canadian Institutes of Health Research/Canada -- NS075449/NS/NINDS NIH HHS/ -- England -- Nature. 2016 Apr 28;532(7600):508-11. doi: 10.1038/nature17665.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Biomedical Sciences, Stem Cell and Cancer Research Institute, McMaster University, Hamilton, Ontario L8S 4K1, Canada. ; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, University of California, San Diego, La Jolla, California 92037, USA. ; Bioinformatics Graduate Program, University of California, San Diego, La Jolla, California 92037, USA. ; The Donnelly Centre, University of Toronto, Toronto, Ontario M5S 3E1, Canada. ; Institute for Research in Immunology and Cancer, University of Montreal, Montreal, Quebec H3C 3J7, Canada. ; Department of Physiology, National University of Singapore and Molecular Engineering Laboratory, A*STAR, Singapore 138632, Singapore.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27121842" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Sequence ; Basic Helix-Loop-Helix Transcription Factors/genetics/*metabolism ; Cell Count ; *Cell Self Renewal/genetics ; Down-Regulation/genetics ; Female ; Fetal Blood/cytology ; Gene Knockdown Techniques ; Hematopoietic Stem Cells/*cytology/*metabolism ; Humans ; Male ; Mice ; Protein Binding ; RNA, Messenger/genetics/metabolism ; RNA-Binding Proteins/genetics/*metabolism ; Receptors, Aryl Hydrocarbon/genetics/*metabolism ; *Signal Transduction/genetics
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  • 84
    Publication Date: 2016-04-28
    Description: The primary visual cortex contains a detailed map of the visual scene, which is represented according to multiple stimulus dimensions including spatial location, ocular dominance and stimulus orientation. The maps for spatial location and ocular dominance arise from the spatial arrangement of thalamic afferent axons in the cortex. However, the origins of the other maps remain unclear. Here we show that the cortical maps for orientation, direction and retinal disparity in the cat (Felis catus) are all strongly related to the organization of the map for spatial location of light (ON) and dark (OFF) stimuli, an organization that we show is OFF-dominated, OFF-centric and runs orthogonal to ocular dominance columns. Because this ON-OFF organization originates from the clustering of ON and OFF thalamic afferents in the visual cortex, we conclude that all main features of visual cortical topography, including orientation, direction and retinal disparity, follow a common organizing principle that arranges thalamic axons with similar retinotopy and ON-OFF polarity in neighbouring cortical regions.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860131/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860131/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kremkow, Jens -- Jin, Jianzhong -- Wang, Yushi -- Alonso, Jose M -- EY005253/EY/NEI NIH HHS/ -- R01 EY005253/EY/NEI NIH HHS/ -- R01 EY020679/EY/NEI NIH HHS/ -- England -- Nature. 2016 May 5;533(7601):52-7. doi: 10.1038/nature17936. Epub 2016 Apr 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Graduate Center for Vision Research, State University of New York, College of Optometry, 33 West 42nd Street, New York, New York 10036, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27120164" target="_blank"〉PubMed〈/a〉
    Keywords: Afferent Pathways/radiation effects ; Animals ; Axons/physiology ; *Brain Mapping ; Cats ; Darkness ; Dominance, Ocular/physiology ; Light ; Macaca mulatta ; Male ; Models, Neurological ; Orientation/physiology/radiation effects ; Photic Stimulation ; Retina/physiology/radiation effects ; Space Perception/*physiology/radiation effects ; Thalamus/physiology/radiation effects ; Visual Cortex/*physiology/radiation effects ; Visual Fields/*physiology
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  • 85
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    Nature Publishing Group (NPG)
    Publication Date: 2016-05-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nagata, Shigekazu -- England -- Nature. 2016 May 18;533(7604):474-6. doi: 10.1038/nature18439.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Biochemistry and Immunology, WPI Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27225115" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Caspases/*metabolism ; *Cell Differentiation ; Cytochrome c Group/*metabolism ; Drosophila melanogaster/*cytology ; Male ; Spermatozoa/*cytology/*metabolism
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  • 86
    Publication Date: 2016-03-17
    Description: Alzheimer's disease (AD) is a neurodegenerative disorder characterized by progressive memory decline and subsequent loss of broader cognitive functions. Memory decline in the early stages of AD is mostly limited to episodic memory, for which the hippocampus has a crucial role. However, it has been uncertain whether the observed amnesia in the early stages of AD is due to disrupted encoding and consolidation of episodic information, or an impairment in the retrieval of stored memory information. Here we show that in transgenic mouse models of early AD, direct optogenetic activation of hippocampal memory engram cells results in memory retrieval despite the fact that these mice are amnesic in long-term memory tests when natural recall cues are used, revealing a retrieval, rather than a storage impairment. Before amyloid plaque deposition, the amnesia in these mice is age-dependent, which correlates with a progressive reduction in spine density of hippocampal dentate gyrus engram cells. We show that optogenetic induction of long-term potentiation at perforant path synapses of dentate gyrus engram cells restores both spine density and long-term memory. We also demonstrate that an ablation of dentate gyrus engram cells containing restored spine density prevents the rescue of long-term memory. Thus, selective rescue of spine density in engram cells may lead to an effective strategy for treating memory loss in the early stages of AD.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847731/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847731/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Roy, Dheeraj S -- Arons, Autumn -- Mitchell, Teryn I -- Pignatelli, Michele -- Ryan, Tomas J -- Tonegawa, Susumu -- Howard Hughes Medical Institute/ -- England -- Nature. 2016 Mar 24;531(7595):508-12. doi: 10.1038/nature17172. Epub 2016 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉RIKEN-MIT Center for Neural Circuit Genetics at the Picower Institute for Learning and Memory, Department of Biology and Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA. ; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26982728" target="_blank"〉PubMed〈/a〉
    Keywords: Aging ; Alzheimer Disease/*pathology/*physiopathology ; Amnesia/pathology/physiopathology ; Amyloid beta-Protein Precursor/genetics ; Animals ; Dendritic Spines/pathology/physiology ; Dentate Gyrus/*cytology/pathology/*physiology/physiopathology ; *Disease Models, Animal ; Early Medical Intervention ; Humans ; Long-Term Potentiation ; Male ; Memory, Episodic ; Memory, Long-Term/*physiology ; Mice ; Mice, Transgenic ; Optogenetics ; Plaque, Amyloid ; Presenilin-1/genetics ; Synapses/metabolism ; Transgenes/genetics ; tau Proteins/genetics
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  • 87
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-04-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Roth, Alvin E -- England -- Nature. 2016 Apr 14;532(7598):178. doi: 10.1038/532178a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stanford University, California, USA. He shared the 2012 Nobel Memorial Prize in Economic Sciences with Lloyd Shapley.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27075091" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Economics/*history ; Female ; *Game Theory ; History, 20th Century ; History, 21st Century ; Humans ; Male ; Marketing/history ; Marriage/psychology ; Mathematics/*history ; Nobel Prize ; United States
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  • 88
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-05-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2016 May 5;533(7601):8. doi: 10.1038/533008a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27146997" target="_blank"〉PubMed〈/a〉
    Keywords: Adiposity/physiology ; Animals ; Athletes ; Bicycling/physiology ; Brain/anatomy & histology/metabolism ; Dietary Fats/administration & dosage/metabolism ; Energy Metabolism/*physiology ; Heart Rate ; Hominidae/anatomy & histology/metabolism ; Humans ; Male
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  • 89
    Publication Date: 2016-05-07
    Description: Despite the magnitude of the Ebola virus disease (EVD) outbreak in West Africa, there is still a fundamental lack of knowledge about the pathophysiology of EVD. In particular, very little is known about human immune responses to Ebola virus. Here we evaluate the physiology of the human T cell immune response in EVD patients at the time of admission to the Ebola Treatment Center in Guinea, and longitudinally until discharge or death. Through the use of multiparametric flow cytometry established by the European Mobile Laboratory in the field, we identify an immune signature that is unique in EVD fatalities. Fatal EVD was characterized by a high percentage of CD4(+) and CD8(+) T cells expressing the inhibitory molecules CTLA-4 and PD-1, which correlated with elevated inflammatory markers and high virus load. Conversely, surviving individuals showed significantly lower expression of CTLA-4 and PD-1 as well as lower inflammation, despite comparable overall T cell activation. Concomitant with virus clearance, survivors mounted a robust Ebola-virus-specific T cell response. Our findings suggest that dysregulation of the T cell response is a key component of EVD pathophysiology.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876960/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876960/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ruibal, Paula -- Oestereich, Lisa -- Ludtke, Anja -- Becker-Ziaja, Beate -- Wozniak, David M -- Kerber, Romy -- Korva, Misa -- Cabeza-Cabrerizo, Mar -- Bore, Joseph A -- Koundouno, Fara Raymond -- Duraffour, Sophie -- Weller, Romy -- Thorenz, Anja -- Cimini, Eleonora -- Viola, Domenico -- Agrati, Chiara -- Repits, Johanna -- Afrough, Babak -- Cowley, Lauren A -- Ngabo, Didier -- Hinzmann, Julia -- Mertens, Marc -- Vitoriano, Ines -- Logue, Christopher H -- Boettcher, Jan Peter -- Pallasch, Elisa -- Sachse, Andreas -- Bah, Amadou -- Nitzsche, Katja -- Kuisma, Eeva -- Michel, Janine -- Holm, Tobias -- Zekeng, Elsa-Gayle -- Garcia-Dorival, Isabel -- Wolfel, Roman -- Stoecker, Kilian -- Fleischmann, Erna -- Strecker, Thomas -- Di Caro, Antonino -- Avsic-Zupanc, Tatjana -- Kurth, Andreas -- Meschi, Silvia -- Mely, Stephane -- Newman, Edmund -- Bocquin, Anne -- Kis, Zoltan -- Kelterbaum, Anne -- Molkenthin, Peter -- Carletti, Fabrizio -- Portmann, Jasmine -- Wolff, Svenja -- Castilletti, Concetta -- Schudt, Gordian -- Fizet, Alexandra -- Ottowell, Lisa J -- Herker, Eva -- Jacobs, Thomas -- Kretschmer, Birte -- Severi, Ettore -- Ouedraogo, Nobila -- Lago, Mar -- Negredo, Anabel -- Franco, Leticia -- Anda, Pedro -- Schmiedel, Stefan -- Kreuels, Benno -- Wichmann, Dominic -- Addo, Marylyn M -- Lohse, Ansgar W -- De Clerck, Hilde -- Nanclares, Carolina -- Jonckheere, Sylvie -- Van Herp, Michel -- Sprecher, Armand -- Xiaojiang, Gao -- Carrington, Mary -- Miranda, Osvaldo -- Castro, Carlos M -- Gabriel, Martin -- Drury, Patrick -- Formenty, Pierre -- Diallo, Boubacar -- Koivogui, Lamine -- Magassouba, N'Faly -- Carroll, Miles W -- Gunther, Stephan -- Munoz-Fontela, Cesar -- HHSN261200800001E/PHS HHS/ -- Z01 BC010791-01/Intramural NIH HHS/ -- Z01 BC010791-02/Intramural NIH HHS/ -- Z01 BC010792-01/Intramural NIH HHS/ -- England -- Nature. 2016 May 5;533(7601):100-4. doi: 10.1038/nature17949.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany. ; Bernhard Nocht Institute for Tropical Medicine, World Health Organization Collaborating Center for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany. ; German Center for Infection Research (DZIF), Partner Sites Hamburg, Munich, and Marburg, Germany. ; European Mobile Laboratory Consortium, Bernhard-Nocht-Institute for Tropical Medicine, D-20359 Hamburg, Germany. ; Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia. ; Institute of Experimental Virology, Twincore, Center for Experimental and Clinical Infection Research, 30625 Hannover, Germany. ; Hannover Medical School, 30625 Hannover, Germany. ; National Institute for Infectious Diseases 'Lazzaro Spallanzani', 00149 Rome, Italy. ; Public Health England, Porton Down, Salisbury SP4 0JG, UK. ; Public Health England, Colindale Ave, London NW9 5EQ, UK. ; Robert Koch Institute, 13353 Berlin, Germany. ; Friedrich Loeffler Institute, 17493 Greifswald-Island of Riems, Germany. ; Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland. ; Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK. ; Bundeswehr Institute of Microbiology, 80937 Munich, Germany. ; Institute of Virology, Philipps University, 35043 Marburg, Germany. ; Laboratoire P4-Jean Merieux, US003 INSERM, 69365 Lyon, France. ; National Center for Epidemiology, Hungarian National Biosafety Laboratory, H1097 Budapest, Hungary. ; European Centre for Disease Prevention and Control, 171 65 Solna, Sweden. ; Federal Office for Civil Protection, CH-3700 Spiez, Switzerland. ; Unite de Biologie des Infections Virales Emergentes, Institut Pasteur, 69365 Lyon, France. ; Eurice, European Research and Project Office, 10115 Berlin, Germany. ; Infectious Diseases Unit, Internal Medicine Service, Hospital La Paz, 28046 Madrid, Spain. ; National Center of Microbiology, Institute of Health 'Carlos III', 28220 Madrid, Spain. ; University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany. ; Medecins sans Frontieres, B-1050 Brussels, Belgium. ; Cancer and Inflammation Program, Laboratory of Experimental Immunology, Leidos Biomedical Research, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA. ; Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts 02139, USA. ; Hospital Militar Central Dr. Carlos J. Finlay, 11400 Havana, Cuba. ; World Health Organization, 1211 Geneva 27, Switzerland. ; Institut National de Sante Publique, 2101 Conakry, Guinea. ; Universite Gamal Abdel Nasser de Conakry, CHU Donka, 2101 Conakry, Guinea.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27147028" target="_blank"〉PubMed〈/a〉
    Keywords: CTLA-4 Antigen/metabolism ; Ebolavirus/*immunology ; Female ; Flow Cytometry ; Guinea/epidemiology ; Hemorrhagic Fever, Ebola/*immunology/mortality/*physiopathology ; Humans ; Inflammation Mediators/immunology ; Longitudinal Studies ; Lymphocyte Activation ; Male ; Patient Discharge ; Programmed Cell Death 1 Receptor/metabolism ; Survivors ; T-Lymphocytes/*immunology/metabolism ; Viral Load
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  • 90
    Publication Date: 2016-03-18
    Description: Chronic hepatitis B virus infection is a leading cause of cirrhosis and liver cancer. Hepatitis B virus encodes the regulatory HBx protein whose primary role is to promote transcription of the viral genome, which persists as an extrachromosomal DNA circle in infected cells. HBx accomplishes this task by an unusual mechanism, enhancing transcription only from extrachromosomal DNA templates. Here we show that HBx achieves this by hijacking the cellular DDB1-containing E3 ubiquitin ligase to target the 'structural maintenance of chromosomes' (Smc) complex Smc5/6 for degradation. Blocking this event inhibits the stimulatory effect of HBx both on extrachromosomal reporter genes and on hepatitis B virus transcription. Conversely, silencing the Smc5/6 complex enhances extrachromosomal reporter gene transcription in the absence of HBx, restores replication of an HBx-deficient hepatitis B virus, and rescues wild-type hepatitis B virus in a DDB1-knockdown background. The Smc5/6 complex associates with extrachromosomal reporters and the hepatitis B virus genome, suggesting a direct mechanism of transcriptional inhibition. These results uncover a novel role for the Smc5/6 complex as a restriction factor selectively blocking extrachromosomal DNA transcription. By destroying this complex, HBx relieves the inhibition to allow productive hepatitis B virus gene expression.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Decorsiere, Adrien -- Mueller, Henrik -- van Breugel, Pieter C -- Abdul, Fabien -- Gerossier, Laetitia -- Beran, Rudolf K -- Livingston, Christine M -- Niu, Congrong -- Fletcher, Simon P -- Hantz, Olivier -- Strubin, Michel -- England -- Nature. 2016 Mar 17;531(7594):386-9. doi: 10.1038/nature17170.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Molecular Medicine, University Medical Centre (C.M.U.), Rue Michel-Servet 1, 1211 Geneva 4, Switzerland. ; CRCL, INSERM U1052, CNRS 5286, Universite de Lyon, 151, Cours A Thomas, 69424 Lyon Cedex, France. ; Gilead Sciences, Inc., 333 Lakeside Drive, Foster City, California 94404, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26983541" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Cycle Proteins/*metabolism ; Cell Line, Tumor ; DNA, Viral/genetics/metabolism ; Genes, Reporter ; Genome, Viral/genetics ; Hepatitis B/virology ; Hepatitis B virus/genetics/*physiology ; Hepatocytes/virology ; *Host Specificity ; Humans ; Liver/metabolism/virology ; Male ; Mice ; Plasmids/genetics/metabolism ; Protein Binding ; Proteolysis ; Trans-Activators/*metabolism ; Transcription, Genetic ; Ubiquitin/metabolism ; Ubiquitin-Protein Ligases/metabolism ; Virus Replication
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  • 91
    Publication Date: 2016-01-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2016 Jan 28;529(7587):446-7. doi: 10.1038/529446a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26819022" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Behavior, Animal ; *Disease Models, Animal ; Dog Diseases/*genetics ; Dogs/*genetics/*psychology ; Female ; Humans ; Male ; Obsessive-Compulsive Disorder/genetics ; Surveys and Questionnaires
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  • 92
    Publication Date: 2016-03-05
    Description: The most recent Ebola virus outbreak in West Africa, which was unprecedented in the number of cases and fatalities, geographic distribution, and number of nations affected, highlights the need for safe, effective, and readily available antiviral agents for treatment and prevention of acute Ebola virus (EBOV) disease (EVD) or sequelae. No antiviral therapeutics have yet received regulatory approval or demonstrated clinical efficacy. Here we report the discovery of a novel small molecule GS-5734, a monophosphoramidate prodrug of an adenosine analogue, with antiviral activity against EBOV. GS-5734 exhibits antiviral activity against multiple variants of EBOV and other filoviruses in cell-based assays. The pharmacologically active nucleoside triphosphate (NTP) is efficiently formed in multiple human cell types incubated with GS-5734 in vitro, and the NTP acts as an alternative substrate and RNA-chain terminator in primer-extension assays using a surrogate respiratory syncytial virus RNA polymerase. Intravenous administration of GS-5734 to nonhuman primates resulted in persistent NTP levels in peripheral blood mononuclear cells (half-life, 14 h) and distribution to sanctuary sites for viral replication including testes, eyes, and brain. In a rhesus monkey model of EVD, once-daily intravenous administration of 10 mg kg(-1) GS-5734 for 12 days resulted in profound suppression of EBOV replication and protected 100% of EBOV-infected animals against lethal disease, ameliorating clinical disease signs and pathophysiological markers, even when treatments were initiated three days after virus exposure when systemic viral RNA was detected in two out of six treated animals. These results show the first substantive post-exposure protection by a small-molecule antiviral compound against EBOV in nonhuman primates. The broad-spectrum antiviral activity of GS-5734 in vitro against other pathogenic RNA viruses, including filoviruses, arenaviruses, and coronaviruses, suggests the potential for wider medical use. GS-5734 is amenable to large-scale manufacturing, and clinical studies investigating the drug safety and pharmacokinetics are ongoing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Warren, Travis K -- Jordan, Robert -- Lo, Michael K -- Ray, Adrian S -- Mackman, Richard L -- Soloveva, Veronica -- Siegel, Dustin -- Perron, Michel -- Bannister, Roy -- Hui, Hon C -- Larson, Nate -- Strickley, Robert -- Wells, Jay -- Stuthman, Kelly S -- Van Tongeren, Sean A -- Garza, Nicole L -- Donnelly, Ginger -- Shurtleff, Amy C -- Retterer, Cary J -- Gharaibeh, Dima -- Zamani, Rouzbeh -- Kenny, Tara -- Eaton, Brett P -- Grimes, Elizabeth -- Welch, Lisa S -- Gomba, Laura -- Wilhelmsen, Catherine L -- Nichols, Donald K -- Nuss, Jonathan E -- Nagle, Elyse R -- Kugelman, Jeffrey R -- Palacios, Gustavo -- Doerffler, Edward -- Neville, Sean -- Carra, Ernest -- Clarke, Michael O -- Zhang, Lijun -- Lew, Willard -- Ross, Bruce -- Wang, Queenie -- Chun, Kwon -- Wolfe, Lydia -- Babusis, Darius -- Park, Yeojin -- Stray, Kirsten M -- Trancheva, Iva -- Feng, Joy Y -- Barauskas, Ona -- Xu, Yili -- Wong, Pamela -- Braun, Molly R -- Flint, Mike -- McMullan, Laura K -- Chen, Shan-Shan -- Fearns, Rachel -- Swaminathan, Swami -- Mayers, Douglas L -- Spiropoulou, Christina F -- Lee, William A -- Nichol, Stuart T -- Cihlar, Tomas -- Bavari, Sina -- R01 AI113321/AI/NIAID NIH HHS/ -- R01AI113321/AI/NIAID NIH HHS/ -- England -- Nature. 2016 Mar 17;531(7594):381-5. doi: 10.1038/nature17180. Epub 2016 Mar 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉United States Army Medical Research Institute of Infectious Diseases, Frederick, Maryland 21702, USA. ; United States Army Medical Research Institute of Infectious Diseases, Therapeutic Development Center, Frederick, Maryland 21702, USA. ; Gilead Sciences, Foster City, California 94404, USA. ; Centers for Disease Control and Prevention, Atlanta, Georgia 30333, USA. ; Boston University School of Medicine, Boston, Massachusetts 02118, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26934220" target="_blank"〉PubMed〈/a〉
    Keywords: Alanine/*analogs & derivatives/pharmacokinetics/pharmacology/therapeutic use ; Amino Acid Sequence ; Animals ; Antiviral Agents/pharmacokinetics/pharmacology/*therapeutic use ; Cell Line, Tumor ; Ebolavirus/drug effects ; Female ; HeLa Cells ; Hemorrhagic Fever, Ebola/*drug therapy/prevention & control ; Humans ; Macaca mulatta/*virology ; Male ; Molecular Sequence Data ; Organ Specificity ; Prodrugs/pharmacokinetics/pharmacology/therapeutic use ; Ribonucleotides/pharmacokinetics/pharmacology/*therapeutic use
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  • 93
    Publication Date: 2016-03-31
    Description: Colonic epithelial cells are covered by thick inner and outer mucus layers. The inner mucus layer is free of commensal microbiota, which contributes to the maintenance of gut homeostasis. In the small intestine, molecules critical for prevention of bacterial invasion into epithelia such as Paneth-cell-derived anti-microbial peptides and regenerating islet-derived 3 (RegIII) family proteins have been identified. Although there are mucus layers providing physical barriers against the large number of microbiota present in the large intestine, the mechanisms that separate bacteria and colonic epithelia are not fully elucidated. Here we show that Ly6/PLAUR domain containing 8 (Lypd8) protein prevents flagellated microbiota invading the colonic epithelia in mice. Lypd8, selectively expressed in epithelial cells at the uppermost layer of the large intestinal gland, was secreted into the lumen and bound flagellated bacteria including Proteus mirabilis. In the absence of Lypd8, bacteria were present in the inner mucus layer and many flagellated bacteria invaded epithelia. Lypd8(-/-) mice were highly sensitive to intestinal inflammation induced by dextran sulfate sodium (DSS). Antibiotic elimination of Gram-negative flagellated bacteria restored the bacterial-free state of the inner mucus layer and ameliorated DSS-induced intestinal inflammation in Lypd8(-/-) mice. Lypd8 bound to flagella and suppressed motility of flagellated bacteria. Thus, Lypd8 mediates segregation of intestinal bacteria and epithelial cells in the colon to preserve intestinal homeostasis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Okumura, Ryu -- Kurakawa, Takashi -- Nakano, Takashi -- Kayama, Hisako -- Kinoshita, Makoto -- Motooka, Daisuke -- Gotoh, Kazuyoshi -- Kimura, Taishi -- Kamiyama, Naganori -- Kusu, Takashi -- Ueda, Yoshiyasu -- Wu, Hong -- Iijima, Hideki -- Barman, Soumik -- Osawa, Hideki -- Matsuno, Hiroshi -- Nishimura, Junichi -- Ohba, Yusuke -- Nakamura, Shota -- Iida, Tetsuya -- Yamamoto, Masahiro -- Umemoto, Eiji -- Sano, Koichi -- Takeda, Kiyoshi -- England -- Nature. 2016 Apr 7;532(7597):117-21. doi: 10.1038/nature17406. Epub 2016 Mar 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Immune Regulation, Department of Microbiology and Immunology, Graduate School of Medicine, WPI Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan. ; Core Research for Evolutional Science and Technology, Japan Agency for Medical Research and Development, Tokyo 100-0004, Japan. ; Department of Microbiology and Infection Control, Osaka Medical College, Takatsuki, Osaka 569-8686, Japan. ; Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan. ; Department of Bacteriology, Okayama University Graduate School of Medicine, Okayama 700-8558, Japan. ; Department of Gastroenterology and Hepatology, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan. ; Department of Gastroenterological Surgery, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan. ; Department of Cell Physiology, Hokkaido University Graduate School of Medicine, Sapporo 060-8638, Japan. ; Department of Bacterial Infections, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan. ; Laboratory of Immunoparasitology, Research Institute for Microbial Diseases, WPI Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27027293" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacterial Adhesion ; Caco-2 Cells ; Cell Line ; Colitis/chemically induced/drug therapy/genetics ; Colon/*microbiology ; Dextran Sulfate ; Epithelium/*microbiology ; Female ; *Flagella ; GPI-Linked Proteins/deficiency/genetics/*metabolism/secretion ; Gram-Negative Bacteria/drug effects/metabolism/pathogenicity/*physiology ; Homeostasis ; Humans ; Inflammation/chemically induced/drug therapy/genetics ; Intestinal Mucosa/cytology/metabolism/*microbiology/secretion ; Male ; Mice ; Proteus mirabilis/drug effects/metabolism/pathogenicity ; Symbiosis
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  • 94
    Publication Date: 2016-03-29
    Description: Circuits in the cerebral cortex consist of thousands of neurons connected by millions of synapses. A precise understanding of these local networks requires relating circuit activity with the underlying network structure. For pyramidal cells in superficial mouse visual cortex (V1), a consensus is emerging that neurons with similar visual response properties excite each other, but the anatomical basis of this recurrent synaptic network is unknown. Here we combined physiological imaging and large-scale electron microscopy to study an excitatory network in V1. We found that layer 2/3 neurons organized into subnetworks defined by anatomical connectivity, with more connections within than between groups. More specifically, we found that pyramidal neurons with similar orientation selectivity preferentially formed synapses with each other, despite the fact that axons and dendrites of all orientation selectivities pass near (〈5 mum) each other with roughly equal probability. Therefore, we predict that mechanisms of functionally specific connectivity take place at the length scale of spines. Neurons with similar orientation tuning formed larger synapses, potentially enhancing the net effect of synaptic specificity. With the ability to study thousands of connections in a single circuit, functional connectomics is proving a powerful method to uncover the organizational logic of cortical networks.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844839/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844839/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Wei-Chung Allen -- Bonin, Vincent -- Reed, Michael -- Graham, Brett J -- Hood, Greg -- Glattfelder, Katie -- Reid, R Clay -- P30 EY012196/EY/NEI NIH HHS/ -- P30 EY12196/EY/NEI NIH HHS/ -- P41 GM103712/GM/NIGMS NIH HHS/ -- P41 RR006009/RR/NCRR NIH HHS/ -- P41 RR06009/RR/NCRR NIH HHS/ -- R01 EY010115/EY/NEI NIH HHS/ -- R01 EY10115/EY/NEI NIH HHS/ -- R01 NS075436/NS/NINDS NIH HHS/ -- R21 NS085320/NS/NINDS NIH HHS/ -- England -- Nature. 2016 Apr 21;532(7599):370-4. doi: 10.1038/nature17192. Epub 2016 Mar 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Neuro-Electronics Research Flanders, a research initiative by imec, Vlaams Instituut voor Biotechnologie (VIB) and Katholieke Universiteit (KU) Leuven, 3001 Leuven, Belgium. ; Biomedical Applications Group, Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA. ; Allen Institute for Brain Science, Seattle, Washington 98103, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27018655" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Axons/physiology ; Calcium/analysis ; Dendrites/physiology ; Male ; Mice ; Mice, Inbred C57BL ; Photons ; Pyramidal Cells/cytology/physiology ; Synapses/metabolism ; Visual Cortex/*anatomy & histology/cytology/*physiology/ultrastructure ; Visual Pathways/anatomy & histology/*cytology/*physiology/ultrastructure
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  • 95
    Publication Date: 2016-01-07
    Description: Mechanisms that maintain cancer stem cells are crucial to tumour progression. The ID2 protein supports cancer hallmarks including the cancer stem cell state. HIFalpha transcription factors, most notably HIF2alpha (also known as EPAS1), are expressed in and required for maintenance of cancer stem cells (CSCs). However, the pathways that are engaged by ID2 or drive HIF2alpha accumulation in CSCs have remained unclear. Here we report that DYRK1A and DYRK1B kinases phosphorylate ID2 on threonine 27 (Thr27). Hypoxia downregulates this phosphorylation via inactivation of DYRK1A and DYRK1B. The activity of these kinases is stimulated in normoxia by the oxygen-sensing prolyl hydroxylase PHD1 (also known as EGLN2). ID2 binds to the VHL ubiquitin ligase complex, displaces VHL-associated Cullin 2, and impairs HIF2alpha ubiquitylation and degradation. Phosphorylation of Thr27 of ID2 by DYRK1 blocks ID2-VHL interaction and preserves HIF2alpha ubiquitylation. In glioblastoma, ID2 positively modulates HIF2alpha activity. Conversely, elevated expression of DYRK1 phosphorylates Thr27 of ID2, leading to HIF2alpha destabilization, loss of glioma stemness, inhibition of tumour growth, and a more favourable outcome for patients with glioblastoma.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Sang Bae -- Frattini, Veronique -- Bansal, Mukesh -- Castano, Angelica M -- Sherman, Dan -- Hutchinson, Keino -- Bruce, Jeffrey N -- Califano, Andrea -- Liu, Guangchao -- Cardozo, Timothy -- Iavarone, Antonio -- Lasorella, Anna -- R01CA101644/CA/NCI NIH HHS/ -- R01CA131126/CA/NCI NIH HHS/ -- R01CA178546/CA/NCI NIH HHS/ -- R01NS061776/NS/NINDS NIH HHS/ -- England -- Nature. 2016 Jan 14;529(7585):172-7. doi: 10.1038/nature16475. Epub 2016 Jan 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Cancer Genetics, Columbia University Medical Center, New York 10032, USA. ; Department of Systems Biology, Columbia University Medical Center, New York 10032, USA. ; Center for Computational Biology and Bioinformatics, Columbia University Medical Center, New York 10032, USA. ; Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York 10014, USA. ; Department of Neurosurgery, Columbia University Medical Center, New York 10032, USA. ; Department of Neurology, Columbia University Medical Center, New York 10032, USA. ; Department of Pathology, Columbia University Medical Center, New York 10032, USA. ; Department of Pediatrics, Columbia University Medical Center, New York 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26735018" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Basic Helix-Loop-Helix Transcription Factors/metabolism ; Cell Hypoxia ; Cell Line, Tumor ; Cullin Proteins/metabolism ; Glioblastoma/*metabolism/*pathology ; Humans ; Hypoxia-Inducible Factor-Proline Dioxygenases/metabolism ; Inhibitor of Differentiation Protein 2/*metabolism ; Male ; Mice ; Neoplastic Stem Cells/*metabolism/pathology ; Oxygen/metabolism ; Phosphorylation ; Phosphothreonine/metabolism ; Protein Binding ; Protein-Serine-Threonine Kinases/antagonists & inhibitors/metabolism ; Protein-Tyrosine Kinases/antagonists & inhibitors/metabolism ; Ubiquitination ; Von Hippel-Lindau Tumor Suppressor Protein/*antagonists & inhibitors/metabolism ; Xenograft Model Antitumor Assays
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  • 96
    Publication Date: 2016-04-28
    Description: Circuits in the visual cortex integrate the information derived from separate ON (light-responsive) and OFF (dark-responsive) pathways to construct orderly columnar representations of stimulus orientation and visual space. How this transformation is achieved to meet the specific topographic constraints of each representation remains unclear. Here we report several novel features of ON-OFF convergence visualized by mapping the receptive fields of layer 2/3 neurons in the tree shrew (Tupaia belangeri) visual cortex using two-photon imaging of GCaMP6 calcium signals. We show that the spatially separate ON and OFF subfields of simple cells in layer 2/3 exhibit topologically distinct relationships with the maps of visual space and orientation preference. The centres of OFF subfields for neurons in a given region of cortex are confined to a compact region of visual space and display a smooth visuotopic progression. By contrast, the centres of the ON subfields are distributed over a wider region of visual space, display substantial visuotopic scatter, and have an orientation-specific displacement consistent with orientation preference map structure. As a result, cortical columns exhibit an invariant aggregate receptive field structure: an OFF-dominated central region flanked by ON-dominated subfields. This distinct arrangement of ON and OFF inputs enables continuity in the mapping of both orientation and visual space and the generation of a columnar map of absolute spatial phase.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Kuo-Sheng -- Huang, Xiaoying -- Fitzpatrick, David -- England -- Nature. 2016 May 5;533(7601):90-4. doi: 10.1038/nature17941. Epub 2016 Apr 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Functional Architecture and Development of Cerebral Cortex, Max Planck Florida Institute for Neuroscience, Jupiter, Florida 33458, USA. ; Integrative Biology and Neuroscience Graduate Program, Florida Atlantic University, Boca Raton, Florida 33431, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27120162" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain Mapping ; Calcium/metabolism ; Calcium Signaling ; Female ; Male ; Neurons/cytology/*physiology ; Orientation/physiology ; Photic Stimulation ; Space Perception/physiology ; Thalamus/physiology ; Tupaiidae/*anatomy & histology/*physiology ; Visual Cortex/*anatomy & histology/cytology/*physiology ; Visual Fields/physiology ; Visual Pathways/physiology
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  • 97
    Publication Date: 2016-03-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dustin, Michael L -- England -- Nature. 2016 Mar 31;531(7596):583-4. doi: 10.1038/nature17310. Epub 2016 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Kennedy Institute of Rheumatology, University of Oxford, Oxford OX3 7FY, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26982727" target="_blank"〉PubMed〈/a〉
    Keywords: Acetates/*pharmacology ; Animals ; CD8-Positive T-Lymphocytes/*drug effects/*immunology ; Cholesterol/*metabolism ; Female ; Immunotherapy/*methods ; Male ; Melanoma/*drug therapy/*immunology ; Sulfonic Acids/*pharmacology
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  • 98
    Publication Date: 2016-02-11
    Description: In multiple sclerosis, brain-reactive T cells invade the central nervous system (CNS) and induce a self-destructive inflammatory process. T-cell infiltrates are not only found within the parenchyma and the meninges, but also in the cerebrospinal fluid (CSF) that bathes the entire CNS tissue. How the T cells reach the CSF, their functionality, and whether they traffic between the CSF and other CNS compartments remains hypothetical. Here we show that effector T cells enter the CSF from the leptomeninges during Lewis rat experimental autoimmune encephalomyelitis (EAE), a model of multiple sclerosis. While moving through the three-dimensional leptomeningeal network of collagen fibres in a random Brownian walk, T cells were flushed from the surface by the flow of the CSF. The detached cells displayed significantly lower activation levels compared to T cells from the leptomeninges and CNS parenchyma. However, they did not represent a specialized non-pathogenic cellular sub-fraction, as their gene expression profile strongly resembled that of tissue-derived T cells and they fully retained their encephalitogenic potential. T-cell detachment from the leptomeninges was counteracted by integrins VLA-4 and LFA-1 binding to their respective ligands produced by resident macrophages. Chemokine signalling via CCR5/CXCR3 and antigenic stimulation of T cells in contact with the leptomeningeal macrophages enforced their adhesiveness. T cells floating in the CSF were able to reattach to the leptomeninges through steps reminiscent of vascular adhesion in CNS blood vessels, and invade the parenchyma. The molecular/cellular conditions for T-cell reattachment were the same as the requirements for detachment from the leptomeningeal milieu. Our data indicate that the leptomeninges represent a checkpoint at which activated T cells are licensed to enter the CNS parenchyma and non-activated T cells are preferentially released into the CSF, from where they can reach areas of antigen availability and tissue damage.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schlager, Christian -- Korner, Henrike -- Krueger, Martin -- Vidoli, Stefano -- Haberl, Michael -- Mielke, Dorothee -- Brylla, Elke -- Issekutz, Thomas -- Cabanas, Carlos -- Nelson, Peter J -- Ziemssen, Tjalf -- Rohde, Veit -- Bechmann, Ingo -- Lodygin, Dmitri -- Odoardi, Francesca -- Flugel, Alexander -- England -- Nature. 2016 Feb 18;530(7590):349-53. doi: 10.1038/nature16939. Epub 2016 Feb 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Neuroimmunology, Institute for Multiple Sclerosis Research, University Medical Centre Gottingen, 37073 Gottingen, Germany. ; Institute of Anatomy, University of Leipzig, 04103 Leipzig, Germany. ; Department of Structural and Geotechnical Engineering, University of Rome La Sapienza, 00185 Rome, Italy. ; Department Neurosurgery, University Medical Centre Gottingen, 37075 Gottingen, Germany. ; Division of Immunology, Department of Pediatrics Dalhousie University, Halifax B3H 4R2, Canada. ; Departamento de Biologia Celular e Inmunologia, Centro de Biologia Molecular Severo Ochoa, 28049 Madrid, Spain. ; Medical Clinic and Policlinic IV, Ludwig-Maximilians-University of Munich, 80336 Munich, Germany. ; Department of Neurology, University Hospital, 01307 Dresden, Germany. ; Max-Planck-Institute for Experimental Medicine, 37075 Gottingen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26863192" target="_blank"〉PubMed〈/a〉
    Keywords: Adoptive Transfer ; Animals ; Cell Adhesion ; *Cell Movement ; Cerebrospinal Fluid/*cytology/immunology ; Chemokines/metabolism ; Choroid Plexus ; Collagen/metabolism ; Disease Models, Animal ; Encephalomyelitis, Autoimmune, Experimental/immunology/*pathology ; Female ; Integrin alpha4beta1/metabolism ; Lymphocyte Activation ; Lymphocyte Function-Associated Antigen-1/metabolism ; Macrophages/immunology/metabolism ; Male ; Meninges/immunology/*pathology ; Multiple Sclerosis/immunology/*pathology ; Rats ; Rats, Inbred Lew ; Receptors, CCR5/metabolism ; Receptors, CXCR3/metabolism ; T-Lymphocytes/immunology/*pathology
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  • 99
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-05-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scott, Andrew R -- England -- Nature. 2016 May 11;533(7602):S60-1. doi: 10.1038/533S60a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27167393" target="_blank"〉PubMed〈/a〉
    Keywords: *Access to Information ; Animals ; *Azepines/classification/economics/pharmacology/therapeutic use ; Clinical Trials as Topic ; Drug Discovery/economics/*methods ; Histones/metabolism ; Humans ; *Information Dissemination ; Male ; Mice ; Neoplasms/drug therapy ; Patents as Topic/statistics & numerical data ; Protein Binding ; Protein Structure, Tertiary ; *Triazoles/classification/economics/pharmacology/therapeutic use ; Xenograft Model Antitumor Assays
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  • 100
    Publication Date: 2016-04-07
    Description: Neoplastic pancreatic epithelial cells are believed to die through caspase 8-dependent apoptotic cell death, and chemotherapy is thought to promote tumour apoptosis. Conversely, cancer cells often disrupt apoptosis to survive. Another type of programmed cell death is necroptosis (programmed necrosis), but its role in pancreatic ductal adenocarcinoma (PDA) is unclear. There are many potential inducers of necroptosis in PDA, including ligation of tumour necrosis factor receptor 1 (TNFR1), CD95, TNF-related apoptosis-inducing ligand (TRAIL) receptors, Toll-like receptors, reactive oxygen species, and chemotherapeutic drugs. Here we report that the principal components of the necrosome, receptor-interacting protein (RIP)1 and RIP3, are highly expressed in PDA and are further upregulated by the chemotherapy drug gemcitabine. Blockade of the necrosome in vitro promoted cancer cell proliferation and induced an aggressive oncogenic phenotype. By contrast, in vivo deletion of RIP3 or inhibition of RIP1 protected against oncogenic progression in mice and was associated with the development of a highly immunogenic myeloid and T cell infiltrate. The immune-suppressive tumour microenvironment associated with intact RIP1/RIP3 signalling depended in part on necroptosis-induced expression of the chemokine attractant CXCL1, and CXCL1 blockade protected against PDA. Moreover, cytoplasmic SAP130 (a subunit of the histone deacetylase complex) was expressed in PDA in a RIP1/RIP3-dependent manner, and Mincle--its cognate receptor--was upregulated in tumour-infiltrating myeloid cells. Ligation of Mincle by SAP130 promoted oncogenesis, whereas deletion of Mincle protected against oncogenesis and phenocopied the immunogenic reprogramming of the tumour microenvironment that was induced by RIP3 deletion. Cellular depletion suggested that whereas inhibitory macrophages promote tumorigenesis in PDA, they lose their immune-suppressive effects when RIP3 or Mincle is deleted. Accordingly, T cells, which are not protective against PDA progression in mice with intact RIP3 or Mincle signalling, are reprogrammed into indispensable mediators of anti-tumour immunity in the absence of RIP3 or Mincle. Our work describes parallel networks of necroptosis-induced CXCL1 and Mincle signalling that promote macrophage-induced adaptive immune suppression and thereby enable PDA progression.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833566/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833566/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seifert, Lena -- Werba, Gregor -- Tiwari, Shaun -- Giao Ly, Nancy Ngoc -- Alothman, Sara -- Alqunaibit, Dalia -- Avanzi, Antonina -- Barilla, Rocky -- Daley, Donnele -- Greco, Stephanie H -- Torres-Hernandez, Alejandro -- Pergamo, Matthew -- Ochi, Atsuo -- Zambirinis, Constantinos P -- Pansari, Mridul -- Rendon, Mauricio -- Tippens, Daniel -- Hundeyin, Mautin -- Mani, Vishnu R -- Hajdu, Cristina -- Engle, Dannielle -- Miller, George -- CA155649/CA/NCI NIH HHS/ -- CA168611/CA/NCI NIH HHS/ -- CA193111/CA/NCI NIH HHS/ -- P30CA016087/CA/NCI NIH HHS/ -- R01 CA168611/CA/NCI NIH HHS/ -- T32 CA193111/CA/NCI NIH HHS/ -- UL1 TR000038/TR/NCATS NIH HHS/ -- England -- Nature. 2016 Apr 14;532(7598):245-9. doi: 10.1038/nature17403. Epub 2016 Apr 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉S. Arthur Localio Laboratory, Department of Surgery, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Department of Cell Biology, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Department of Pathology, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Cold Spring Harbor Laboratories, Cold Spring Harbor, New York 11724, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27049944" target="_blank"〉PubMed〈/a〉
    Keywords: Adenocarcinoma/immunology/metabolism/pathology ; Animals ; Apoptosis/drug effects ; *Carcinogenesis/drug effects ; Carcinoma, Pancreatic Ductal/immunology/metabolism/pathology ; Cell Line, Tumor ; Cell Proliferation/drug effects ; Chemokine CXCL1/antagonists & inhibitors/*metabolism ; Deoxycytidine/analogs & derivatives/pharmacology ; Disease Progression ; Female ; GTPase-Activating Proteins/metabolism ; Gene Expression Regulation, Neoplastic ; Humans ; *Immune Tolerance ; Lectins, C-Type/immunology/*metabolism ; Male ; Membrane Proteins/immunology/*metabolism ; Mice ; Mice, Inbred C57BL ; *Necrosis ; Pancreatic Neoplasms/*immunology/metabolism/*pathology ; Receptor-Interacting Protein Serine-Threonine Kinases/metabolism ; Signal Transduction ; Up-Regulation
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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