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  • Biodiversity
  • Nature Publishing Group (NPG)  (74)
  • Iranian Fisheries Science Research Institute  (10)
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  • 1
    Publication Date: 2021-05-19
    Description: The survey sampled during the fourth stage of the season was in 1387. Sampling in eight directions perpendicular (transect) to the beach and 480 samples was performed. In each transect from Astara to the Turkmen 5 stations at depths of 5, 10, 20, 50 and 100 m were selected for sampling. The total number of 191 species was identified; Bacillariophyta category species number was 97, equivalent to %50.8, category of Chlorophyta 28 species, equivalent to %14.7, category of Pyrrophyta 26 species, equivalent to 13.6 %, category of Cyanophyta 25 species, equivalent to 13.1% and category of Euglenaphyta 15 species, equivalent to 7.9% of all species formed. Average abundance of phytoplankton was 27947500(SD=2465184) n/m3 . The average biomass was 125.51(SD=8.84) mg/m3 . Abundance and biomass in spring and summer, autumn and winter have been significant differences (p 〈0.05). The highest frequency was in winter, autumn, summer respectively and spring was (p 〈0.05) and The highest biomass in winter, fall, spring and summer was respectively (p 〈0.05). Bacillariophyta category has the highest abundance equal to 14390833 ± 16262.35 n/m3 (mean ± standard error) were equivalent to %51.49 of the total abundance, Euglenophyta category has the least density equal to 109791 ± 16262.14 n/m3 (mean ± standard error), which is equivalent to % 0.39 of total abundance were included. Also Pyrrophyta category has the highest biomass equal to 69.66 ± 5.53 mg/m3 (standard error ± mean) were equivalent to %53.14 of the total biomass and Chlorophyta category with an average of 0.68 ± 0.11 mg/m3 (mean ± standard error) have the lowest biomass, were equivalent to %0.54 of the total. Phytoplankton Categories in every season, with biomass and abundance have been different (p 〈0.05). Abundance and phytoplankton biomass in the upper layer and lower layer varies with depth of 50 meters (p 〈0.05). With distance from shore and depth increases, reducing the mean abundance and biomass were observed (p 〈0.05). The highest and lowest abundance of phytoplankton was observed at depths of 10 and 100 meters respectively. The maximum amount of phytoplankton biomass in surface areas of deep stations 20 m and the lowest biomass sampled at the deepest point of the station was 100 meters. Abundance and biomass of phytoplankton in the deep layers of the sample with significant difference (p〈0.05) . So that the highest abundance layers of 10 m, the surface layer of 5 m, 20 m, 50 m and 100 m, respectively(p 〈0.05), and the most biomass in the surface layers of 5 m, 20 m, 10 m, 50 and 100 meters, respectively (p 〈0.05). Abundance and biomass of phytoplankton in transects was significant difference (p 〈0.05). Most phytoplankton respectively transect Astara, Babolsar, Anzali Amirabad, Turkmen, Sefidrud, Noshahr, Branch was observed (p 〈0.05) and in terms of biomass, respectively transects Astara, Anzali, Sefidrud, Babolsar, Noushahr, Branch, Amirabad and Turkmen values were higher (p 〈0.05). Species diversity indexe (Shannon – Wiener) phytoplankton was equivalent to 2.92. Environmental conditions and nutrients in different seasons on these parameters influenced the way that species diversity was lowest in summer and in autumn, winter, and spring, respectively, species diversity increased.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Phytoplankton ; Seasonal distribution ; Biomass ; Abundance ; Biodiversity
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 89pp.
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  • 2
    Publication Date: 2021-05-19
    Description: This project was carried out in order to determine the hatching conditions and laboratory culture methods of Fairy Shrimps ( Phallocryptus spinosa). Physico- chemical factors and phytoplankton of natural habitat of this organism was investigated in Khasellou region around Azarshahr – East Azarbaijan province. The results showed that occurance and growth of fairy shrimps in their habitates were beginning from early Aprill and their survival was decreased with increasing temperature, precipitation and increasing the salinity of their culture medium. Then they disappeared. Their habitat phytoplankton contained 3 phylla and 10 genera, from which green algae enjoyed the greatest density in May. The pool salinity was around 20-17 g/l , when metanauplii was observed in early spring. In the pool containing and without fairy shrimps the oxygen concenteration was high (9 mg/l) and low (2.9 mg/l ) , respectively . In 9 prawn ornamental fish genera, feeding with fairy shrimp showed a significant higher fecundity and hatching percentage compaired to manual diets (cow liver, spinach). In all groups fed with fairy shrimp the duration of spawning time were reduced from 15 to 8-10 days and the color was enhanced. The means of cyst number per captured female also, cyst , decapsulated cyst and Naupilli diameters were mesured 142.9±19.0 cysts , 273.2 ± 4.9 µ , 242.4± 3.8 µ and 542.6 ± 27.0 µ., respectively . The hatching rate was increased by reducing temperature and salinity of their culture mediums from 25 to 15 ◦ C , and 28 to 18 g/l, respectively.The highest hatching was observed on 5 th day at 15 ◦ C and 18 g/l (5, 33 %). In addition, low but multiple hatching was observed. Therefore , water temperature and salinity affected hatching rate in this species.The hatching success of Phallocryptus spinosa cysts was beter when collecting cysts together with dry sediments of their habitat without separation sensetive cysts . In addition to cold keeping and freezing, the hydration – dehydration method caused more diapause deactivation for hatching induction. The laboratory results revealed that the survival of fairy shrimps were highest at 15 ◦ C (42%) and lowest at 25◦ C (26%), respectively. Also, their life was inhibited in 30◦ C.In different salinities, the mean survival rate were 26% (Salinity = 15 g/l) and 20% (Salinity = 25 g/l), respectively. The mean survival percentage of Phallocryptus spinosa cultured in natural habitat water (64.3%) was higher than aerated tap water (23, 3 %). Also, feeding with Nanochlorepsis caused higher survival rates. On the other hand, Beakers yeast caused higher mortality rates. Therefore , regarding to relatively high sensitivity of these species to physico – chemical and nutritional conditions of their culture medium, it is better to culture these species with expantion of their natural habitat in order to preserve their biodiversity , culture and increase stocking density with regard to environmental considerations .
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Physico-chemical ; Environmental ; Fairy Shrimps ; Phallocryptus spinosa ; Hatching ; Culture ; Biotechnique ; Species ; Anostraca ; Phytoplankton ; Growth ; Temperature ; Salinity ; Phylla ; Feeding ; Survival rate ; Mortality ; Biodiversity
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 104pp.
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  • 3
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    Publication Date: 2021-05-19
    Description: A survey on Biodiversity of cyprinidae family in Iran cyprinidae family is the biggest and most important fish families with 367 Genera and 3006 species in the world. Members of this family is the most important freshwater species are present in a variety of freshwater ecosystems. Some of them can also live in brackish waters. Iran has about 93 species in the family Cyprinidae and consist half of the fishes in inland waters. In the past two decades many changes occurred in aquatic ecosystems, Fish habitat conditions changed and a lot of them are affected and some species are endangered or put under pressure. Restricted fish migration, Some Exotic species and have been entered in water resources and have narrowed arena on continued existence of native species. On the other hand, climate change and drought on water resources aggravate existing conditions. It is necessary effects of these changes in the family Cyprinidae be reviewed and analyzed.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Cyprinidae ; Biodiversity ; Water resources ; Climate Changes
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 61pp.
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  • 4
    Publication Date: 2021-05-19
    Description: In order to study the ecological status of western and estern estuary of of Hormozgan, sampling of sediments in four stations in each estuary was carried out seasonally from spring to winter of 2016. In this study, 118 species of polychaets, 71 species 0f crustacea, 25 species of bivalves and 20 species of gastropods were introduced. The average density of macrobenthos population in indicated that the station 2 in Laft with 1522, station 1 in Khoran with an average of 3397 and station 4 of Yekshabe and Tiab with a mean of 980 and 1577 inm-2 respectively were the most densely populated. In laft, Margalef index, with the values of 7.44 in station 2, Shannon with 2.68 in Station 3, Pielo-Evenes with 0.77 in station 3, Simpson index with 0.43 in station 4 and w- Statistic with a value of 0.3 at station 3, In khooran Margalef index with a value of 43.4 at station 2, Shannon with a value of 2.78 at station 2, pielo-Evenes with a value of 0.66 at station 2, Simpson index with a value of 0.61 at station 1 and index w -statistic with a value of 0.1 at station two, In Yekshabeh, Margalef index with 8.83 in station 4, Shannon with a value of 3.68 at station 4, Pylou-Evenes with a value of 0.88 at station 4, Simpson index with a value of 0.11 at station 3 and w- Statistic with a value of 0.24 at stations two and four, and im Tiab, the Margalf index with a value of 10.46 at station 4, Shannon with a value of 3.47 at station 4, Pylou-Evenes with a value of 0.83 at station 2, Simpson index with a value of 0.17 at station 1 and index w -statistic with the value of 0.29 at station 4 were the highest in this survey. Totaly, these quantitative and qualitative indices based on weight ABC for Laft and Khoran discribed relatively contaminated and for Yekshabe and Tiab discribed non-contaminated condition In sum, these quantitative and qualitative indices based on ABC weight for leachate and dough conditions were relatively contaminated and for one and the other cobbins, non-contaminated conditions, due to which can be adjacent to the West Bank with the Persian Gulf, low depth and limited water exchanges, and as a result , the accumulation of materials from pllutands in thisestuaries and their impact onbenthic communities.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Estuaries ; Macrob enthos ; Index ; Biodiversity ; Population ; Fishery
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 66pp.
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  • 5
    Publication Date: 2021-05-19
    Description: This study focused on population structure, biodiversity, and abundance of the Chitgar Lake fishes in October 2014. Based on the lake location fishes samples were collected at 34 stations in water body. In this study identified 8 family belong to 18 species comprised of Cyprinidae (11 species), Cichlidae (one species), Loricariidae (one species), Pangasiidae (one species), Serrasalmidae (one species), Poeciliidea (one species), Salmonidae (one species), and Scaridae (one species) were Identified. Among the fishes just one native fish from Capoeta bohsei species observed during the study. The dominant lake fishes were invasive species Hemiculter leucisculus, Alburnus hohenackeri, Carassius auratus, Carassius gibelio and Pseudorasbora parva. The highest abundance of fishes were H. leucisculus 62 % and A. hohenackeri 35 % by Seine net. Furthermore, those were dominant abundance (69 and 12 % respectively) in Gill net method. Finally in Cast net method A. hohenackeri 38 %, Pseudorasbora parva 21 % and H. leucisculus 17 % were dominated in the shore region. The lowest fishes abundance were P. hypophthalmus and Parrotfish. Overall more than 90 % of the fishes population were invasive and alien species. Thus, the present of invasive fishes and predator fishes luck in the Chitgar lake might be reason for ecosystem ruin, algae bloom, feed competitive, fish disease and trophy level rises.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Fish ; Biodiversity ; Species ; Abundance ; Cyprinidae ; Cichlidae ; Loricariidae ; Pangasiidae ; Serrasalmidae ; Poeciliidea ; Salmonidae ; Scaridae ; Capoeta bohsei ; Hemiculter leucisculus ; Alburnus hohenackeri ; Carassius auratus ; Carassius gibelio ; Pseudorasbora parva
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 74pp.
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  • 6
    Publication Date: 2021-05-19
    Description: In recent years MPAs (Marine Protected Areas) have been known as a flexible tool to improve fishery management as well as to preserve biodiversity in valuable coastal waters habitats. This study was conducted to selecting the sensitive and high potential area that are impacted by several environmental stress and associated habitats are being damaged in Mahshahr creeks in Northwest of Persian Gulf. Study was done in eight creeks from October 2005 to September 2006. Different biotic parameters such as phytoplanktons, zooplankton, macro zooplankton, benthic animals and fishes (trawled species) communities and also physico-chemical parameters and sediments heavy metals were investigated. Different parameters were sampled monthly or seasonal from each creek. Water samples with bottle sampler and sediment were collected by Peterson grab. Several ecological and biological indices based on heavy metals and benthic communities were used. Concentrations of heavy metals were measured by using voltammetric plarography method (Methrom 797). The range and mean concentrations obtained in mg/kg were 35.16-15.03 (27.01) for Cu, 171.41-65.57 (102.672) for Ni, 20.06-4.63 (13.22) for Co, 0.78-0.093 (0.22) for Hg, 379-65.07 (113.7) for Zn, 1.00-0.27 (0.559) for Cd and 29.72-7.09 (14.66) for Pb. To evaluate the levels of sediment contaminations, the background values of the different heavy metals were calculated and contamination factor for each metals and degree of contamination for each creek determined as well. Measured concentrations were compared with International standards. Ultimately the heavy metals contamination factors (Cf) can be arranged as follows: Hg〉 Zn〉 Cu≥ Ni〉 Pb≥ Co 〉 Cd and according to contamination degree (Cd), different creeks can be arranged as follows too: Ghannam〉 Ahmady≥ Zangy〉 Doragh≥ Darvish〉 ghazaleh〉 Patil〉 Bihad Regarding the results some elements such as Hg, Zn and Ni, are at risk level and all of the studied creeks are classified in moderate degree of pollution except Ghannam showing considerable degree of pollution. The benthic invertebrates are a well-established target in evaluations of environmental quality status. The AMBI(AZTI,s Marine Biotic Index) was developed to determine the impacts and the quality status in softbottom marine benthic communities. All creeks are characterized by muddy bottom. Macrobenthic animals, according to their sensitivity to an increasing stress gradient, classified in five ecological groups. In present study due to appearance of dominant species such as Capitella sp and nematodes (as opportunist species), diversity values was reduced. Two way ANOVAs showed only seasonal significant differences in mean abundance (P〈0.05, f=5.712, df:3,21) and Richness index values (p〈0.05, f= 4.975, df=3,21), while all of creeks showed similar biological characters based on benthic communities. According to annual, mean of AMBI (BC) all of creeks classified in ecological group III with slightly pollution, except Darvish that was placed in unpolluted category. In general, according to AMBI and BI values, The most creeks are classified in unpolluted (34%) and slightly pollution (34%) categories except Zangy, Doragh and Patil in summer and also Zangy and Bihad in winter that showed moderate to heavily pollution (32%). The results of chemical quality of sediments, Cf values, Cd values, AMBI Index and water quality and risk Indices have confirmed each other. In general, the Mahshahr creeks are classified in moderate to heavy pollution status. In addition, biological parameters of benthic communities and other biotic parameters have showndescending trend in ecological quality in all of the studied creeks. Communities. According to annual, mean of AMBI (BC) all of creeks classified in ecological group III with slightly pollution, except Darvish that was placed in unpolluted category. In general, according to AMBI and BI values, The most creeks are classified in unpolluted (34%) and slightly pollution (34%) categories except Zangy, Doragh and Patil in summer and also Zangy and Bihad in winter that showed moderate to heavily pollution(32%). The results of chemical quality of sediments, Cf values, Cd values, AMBI Index and water quality and risk Indices have confirmed each other. In general, the Mahshahr creeks are classified in moderate to heavy pollution status. In addition, biological parameters of benthic communities and other biotic parameters have showndescending trend in ecological quality in all of the studied creeks. We used of some criteria for evaluation of biotic potential or sensitivity and also to explain the ecological health level of studied creeks. Positive and negative criteria are classified in three level 1,3 and 5 for low, moderate and high degree of conservation value respectively. According to gained points the creeks Darvish, Doragh and Ghazaleh in high level and creeks Ghannam , Zangy and ahmady in low level of conservation value were classified.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Environmental ; Physico-chemical ; Ecological ; Biological ; Bottom sediments ; Heavy metals ; Contamination factor ; AMBI Index ; Risk Index ; Biodiversity ; Species ; Samples ; Benthic ; ANOVA ; Pollution
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 158pp.
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  • 7
    Publication Date: 2021-05-19
    Description: Oman sea is an important aquatic part of south-east part of iran that lies from 27°N(Hormoz strait) until 25° 45′N (Gwatar Gulf) that is next to two Southern Province ,Hormozgan ann Sistan-o- baloochestan. Sampling was carried out from march 2007 and 2008 to September 2007 and 2008 in two period of time postmonsoon and premonsoon . A total 24 station on 10 transect 4 stations were on each transect 1 and 2 with 10 miles far from each other and for the others 2 stations were on each transect. A 0.1 m2 VAN – VEEN GRAB was used for sediment sampling and a CTD was used to record physical data of water column. Macrobenthos frequency data and biodiversity indices were used to determine of density and biodiversity of macrobenthos respectively. Wet weight was used to determine wet biomass of macronenthos. Among benthic invertebrate polychaete with average 800 ind-2 and then amphipods and gastropods were the most abundance . Yearly density of macrobenthos showed polychaete with the average of 500 ind.-2 in 2007 and 1000 ind.-2 in 2009 was the most abundance . Macrobenthos density in postmonsoon was more than premonsoon.p〈0.05. An increasing and decreasing in density and biodiversity was obtain from coast to depth respectively p〈0.05. There was no significant different between macrobenthos density from Hormoz strait to Golf of Guiter.p〉0.05. There was a negative regression between macrobentos density and depth(p〈0.05) and positive rsgresion between macrobenthos and oxygen concentration and temperature.(p〈0.05). There was also a significant relationship between macrobenthos ,coppepda and polychaete density with organic carbon.p〈0.05. Bimass changed from strait to Golf and coast to depth increasingly.p〈0.05.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Macrobenthos ; Biodiversity ; Abundance ; Distribution ; Diversity ; Biomass ; Aquatic ; Sampling ; Biodiversity ; Polychaete
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 67pp.
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  • 8
    Publication Date: 2021-05-19
    Description: This study was performed to investigating of distribution, biomass estimation and preparing Atlas of seaweeds in coastal and Islands of Persian Gulf (Hormozgan province). The samples were collected monthly from Sep. 2001 to Aug. 2002 in 6 stations of coastal and from Nov. 2002 to Oct. 2003 in 4 stations of Island of Persian Gulf in periods of low tides. For assessment of biodiversity and biomass estimation, the samples were taken from quadrate with 0.25 m2 (0.5m x 0.5m) area in random fashion. During this study 78 species of 4 divisions of seaweeds were identified. Rhodophyta represented 38 species, Chlorophyta 21 species followed by 18 species of Phaeophyta and only 1 species of Cyanophyta. The maximum and minimum species diversity of seaweeds was 74 and 31 species and related to Lark Island (St8) and Michail (St.5) respectively. Although some species such as Gracilaria corticala, Gelidiella acerosa, Laurencia snyderia, Colpomenia sinousa, Padina australis and Dictyosphaeria covernosa were abundant-in-all-stations-during-period-of-this-studynbut-some-species-were-not-see in some stations, such as Turbinaria conoiedes only in Lark island (St.8), Spatoglassum variable and Sleochospermum marginatum in Lark (St.8) and Qeshem islands (Sty), Codium papilatum and Ulva spp. in Lark and Hormoz (St. 7) islands, and Sargassum ilicifolium in Bandar Lengeh (St.2), Shiyo (St.6), Larak (St.8) and Qeshem islands (St. 10). The maximum and minimum value of algal biomass (wet weight) was recorded in Bandar Leneeh (St.2) with 1058 qr.m-2 and Oeshem islands (St.9) with 391 gr.nf2 and there was significant difference between two stations (P〈O.05). Also, the maximum algal biomass was recorded in summer (1466 gr.m- ) and in Tahoneh-Gorzeh (St.4) and minimum value (130 grem-2 ) in Qeshem islands (St.9). In the other hand, the maximum value of algal biomass was recorded in Brown algae division (824 gr.m2) and in Bandar Lengeh (St.2) and the minimum value of algal biomass were recorded in Green algae division (26gr.m-2) and in Hormoz (St. 7) and Qeshem islands (St.9). The average biomass of red algae, brown algae and green algae was 559 gr.m-2 (St.4), 1160 gr.m-2 (St.2) and 519 gr.Bf2 (St.4) respectively. The maximum and minimum length of two brown algae Sargassum sp. and Padina sp. were recorded in spring (growth season) and summer respectively. Also the maximum and minimum dry on wet weight percent were recorded in summer and spring and therefor, there is significant difference between different seasons (P〈O.05).
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Distribution ; Biomass ; Seaweeds ; Biodiversity ; Assessment ; Species ; Gracilaria corticala ; Gelidiella acerosa ; Laurencia snyderia ; Colpomenia sinousa
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 87pp.
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  • 9
    Publication Date: 2021-05-19
    Description: This study was conducted to determine of phytoplankton abundance and diversity of water and their spatial and temporal fluctuations in the Mazandaran coastal of Caspian Sea in 6 months, at 4 transects (Tonekabon, Nowshahr, Babolsar, Amirabad) during different season of 2012-2013. 72 samples were collected at surface layer of water in 5, 15 and 30m depths. The sampls were analyzed based on the standard methods. 112 species contributed in phytoplankton community structure which where classified in 9 phyla namly: Bacillariophyta (42 species), Pyrrophyta (18 species), Cyanophyta (14 species), Chlorophyta (15 species), Euglenophyta (11 species), Cryptophyta (2 species), Chrysophyta (3 species), Haptophyta (1 species) and Xantophyta (1 species). Meanwhile small flagellate algae with Maximum Linear Dimension (MLD) 〈10 µ observed which they classified in small flagellates. Mean annual phytoplankton abundance with standard error obtained 164 ± 32 million Cells/m3. Seasonal study showed that phytoplankon abndance of summer was 1.5 folds of spring. The value in auttuman was same as spring, however it increased sharply in winter. The mean phytoplankton abundance of winter was 5 folds of the other seasons. Mean phytoplankton abundance of Tonkabon and Nowshahr (west transects) were 1.6 and 2 folds of Amirabad (east transect), respectively. Bacillariophyta with 89 percent of total abundance was the predominant phylum and Pyrrophyta was the second one. The third and fourth of dominant phyla were Cyanophyta and Chlorophyta, respectively. Chrysophyta and small flagellates showed equal percentage of abundance (1.4 percent of total abundance). Monthly study showed that Chaetoceros throndsenii was the first dominant species in Ordibehesht, Tir and Shahrivar. However, the first dominant species in Aban, Day and Esfand were Thalassionema nitzschioides, Skeletonema costatum and Pseudonitzschia seratia respectively. Mean phytoplankton biomass calculated 156.5 ± 18.1 during the study period. The mean of biomass was higher in summer and winter than the two other seasons. Phytoplankton biomass was formed mainly by Bacillariophyta and Pyrrophyta in all seasons. The highest biomass were belonged to Cyclotella meneghiniana and Coscinodiscus jonesianus (Bacillariophyta) in spring and summer respectively.While in fall and winter Prorocentrum proximum was in the first place of dominat species. Small size and flagellates species of different phyla (Chrysophyta, Bacillariophyt...) had importance role for determination of ecological and water quality conditions during spring to autuman. The increasing of phytoplankton abundance within these times indicates to regeneration of nutrients or entrainment of nutrient-rich deep water. Dominant species were observed in single forms, small filament and loose colonies during spring to autuman. However, these form shifted to fair-long chains form in winter which it indicates to nutrient-rich water was brought to the surface by vertical mixing process. It seems that environmental stress and instability of ecosystem was benefit to Chaetoceros throndsenii and Pseudonitzschia seriata which are known as species with bloom potential. Ability of reproduction in sewage environment (Chaetoceros throndsenii) and toxin production (Pseudonitzschia seriata) are the ecological and physiological significant characters of the two species.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Ecological ; Physiological ; Phytoplankton ; Abundance ; Biomass ; Biodiversity ; Species ; Sample ; Bacillariophyta ; Pyrrophyta ; Cyanophyta ; Euglenophyta ; Cryptophyta ; Chrysophyta ; Haptophyta ; Xantophyta ; Chaetoceros throndsenii ; Pseudonitzschia seriata
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 62pp.
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  • 10
    Publication Date: 2021-05-19
    Description: The Kutum, Rutilus frisii kutum, is one of the most important bony fishes in Iranian coastal of Caspian Sea. Its harvest range is between 9000-10000 tons in a year, nearly 60% of the income of Bony fish fishery produced by kutum fishery. The stock of this species reduced drastically in 1982 and the catch slumped to the less than 250 tons in a year. Kutum spawning grounds deterioration, illegal catch, lack of restocking program were the main cause of the decline. This Spices in nature comprised by two distinct form, autumn and spring form. It is worth to be mentioned, by the effect of Caspian Sea Bony fishes Research Center s experts in 1983, artificial spawning and releasing the fries to the sea were commenced and the catch steadily improved. But all activities concerning restocking of kutum concentrated in spring form, as at present about 260 million its fries are released into sea for restocking by Iranian Fisheries Organization, but for above reasons and lack of restocking program, the populations of autumn form gravely shrinked and neared to be extinct. Therefore, to enhance the biodiversity and boost fishers livelihood of kutum in Caspian Sea this project implemented by cooperation of Iranian Fisheries Organization (IFRO) and Caspian Environment Program (CEP) in Aquaculture Institute (Inland Waters). In this project, brooders caught from Anzali lagoon and maintained in two different condition, include of floating cages in Anzali lagoon and earthen ponds in Sefidrud Fisheries Research Station. The results showed that there weren t significant differences between two maintenance statuses in maturation period and other reproductive characteristics of brooders. The ratio of male to female was 1 to 1.4. Minimum and maximum weight measured 1450 to 3100 g (with average of 1850 g) in female and 670 to 1900 g (with average of 1165 g) in male, respectively. The first natural spawning of brooders occurred in the end of January in temperature of 8 till 10 °C in concrete ponds. Also, some of maintained brooders in earthen ponds spawned in February. The average number of absolute, function and relative fecundity determined 88565 16809, 73805 14008 and 48670 12056, respectively. For artificial spawning, male and female brooders injected by pituitary gland with dose of 2-3 and 4-5 mg/kg body weight, respectively. Approximately, 10 and 8 present of female were over-ripe and immature in March (artificial spawning time), respectively. More than 59 % of injected female brooders induced to spawning in first stage after 10-12 hours and 13 % of them in twice stage and 7-8 hours after first stage. And also, 27.6% of females didn’t positive response to injection. Dry method used for eggs fecundity and incubation period lasted 7- 10 days in 14-16 °C. In totally, eggs fertilization were more than 95% and the average of eggs fertilization percent in throughout of period measured more than 92.7 6 %. Eyed eggs appearance occurred 3 days after fecundity and its mean was 92.7 15.1%. Larvae after yolk sac absorption feed with dry milk for 4-5 days and then introduced into fertilized earthen ponds (500 m2 and equipped to aerators) in intensive condition and fed with micro pellet food for 3-4 month. In finally, more than 1.8 millions fries of 1-2 g and some more than 5 g produced and released into Anzali lagoon to its restocking for first time. It is expected that continuing of restocking process of autumn form kutum by Iranian Fisheries Organization eventuate to population increasing of this form in Caspian Sea in future.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Artificial propagation ; Culture ; Rutilus frisii kutum ; Kutum ; Bony Fish ; Fishery ; Spawning ; Biodiversity ; Aquaculture ; Brooders ; Fecundity ; Male ; Female ; Population
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 79pp.
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  • 11
    Publication Date: 2022-10-18
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in GigaScience 4 (2015): 27, doi:10.1186/s13742-015-0066-5.
    Description: Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
    Description: This work was supported by the Micro B3 project, which is funded from the European Union’s Seventh Framework Programme (FP7; Joint Call OCEAN.2011‐2: Marine microbial diversity – new insights into marine ecosystems functioning and its biotechnological potential) under the grant agreement no 287589.
    Keywords: Ocean sampling day ; OSD ; Biodiversity ; Genomics ; Health index ; Bacteria ; Microorganism ; Metagenomics ; Marine ; Micro B3 ; Standards
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 12
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in GigaScience 5 (2016): 14, doi:10.1186/s13742-016-0118-5.
    Description: Systems biology promises to revolutionize medicine, yet human wellbeing is also inherently linked to healthy societies and environments (sustainability). The IDEA Consortium is a systems ecology open science initiative to conduct the basic scientific research needed to build use-oriented simulations (avatars) of entire social-ecological systems. Islands are the most scientifically tractable places for these studies and we begin with one of the best known: Moorea, French Polynesia. The Moorea IDEA will be a sustainability simulator modeling links and feedbacks between climate, environment, biodiversity, and human activities across a coupled marine–terrestrial landscape. As a model system, the resulting knowledge and tools will improve our ability to predict human and natural change on Moorea and elsewhere at scales relevant to management/conservation actions.
    Description: Work was supported in part by: the Institute of Theoretical Physics and the Pauli Center at ETH Zurich; the US National Science Foundation (NSF Moorea Coral Reef Long Term Ecological Research Site, OCE-1236905; Socio-Ecosystem Dynamics of Natural-Human Networks on Model Islands, CNH-1313830; Coastal SEES: Adaptive Capacity, Resilience, and Coral Reef State Shifts in Social-ecological Systems, OCE-1325652, OCE-1325554); the Gordon and Betty Moore Foundation (Berkeley Initiative in Global Change Biology; Genomic Standards Consortium); Courtney Ross and the Ross Institute; UC Berkeley Vice Chancellor for Research; CRIOBE; and the France Berkeley Fund (FBF 2014-0015).
    Keywords: Computational ecology ; Biodiversity ; Genomics ; Biocode ; Earth observations ; Social-ecological system ; Ecosystem dynamics ; Climate change scenarios ; Predictive modeling
    Repository Name: Woods Hole Open Access Server
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  • 13
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    Nature Publishing Group (NPG)
    Publication Date: 2008-09-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hugenholtz, Philip -- Tyson, Gene W -- England -- Nature. 2008 Sep 25;455(7212):481-3. doi: 10.1038/455481a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18818648" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Computational Biology/trends ; *Ecosystem ; *Environmental Microbiology ; Eukaryotic Cells/metabolism ; Evolution, Molecular ; *Genetics, Microbial/methods ; Genome/genetics ; *Genomics/economics/methods/trends ; Humans ; Marine Biology ; Prokaryotic Cells/metabolism ; Sequence Analysis, DNA/economics ; Time Factors ; Viruses/genetics
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  • 14
    Publication Date: 2008-06-17
    Description: The causes of mass extinctions and the nature of biological selectivity during extinction events remain central questions in palaeobiology. Although many different environmental perturbations have been invoked as extinction mechanisms, it has long been recognized that fluctuations in sea level coincide with many episodes of biotic turnover. Recent work supports the hypothesis that changes in the areas of epicontinental seas have influenced the macroevolution of marine animals, but the extent to which differential environmental turnover has contributed to extinction selectivity remains unknown. Here I use a new compilation of the temporal durations of sedimentary rock packages to show that carbonate and terrigenous clastic marine shelf environments have different spatio-temporal dynamics and that these dynamics predict patterns of genus-level extinction, extinction selectivity and diversity among Sepkoski's Palaeozoic and modern evolutionary faunae. These results do not preclude a role for biological interactions or unusual physical events as drivers of macroevolution, but they do suggest that the turnover of marine shelf habitats and correlated environmental changes have been consistent determinants of extinction, extinction selectivity and the shifting composition of the marine biota during the Phanerozoic eon.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peters, Shanan E -- England -- Nature. 2008 Jul 31;454(7204):626-9. doi: 10.1038/nature07032. Epub 2008 Jun 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geology & Geophysics, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA. peters@geology.wisc.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18552839" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Biological Evolution ; Carbonates/analysis ; *Environment ; *Extinction, Biological ; *Fossils ; Marine Biology ; *Selection, Genetic ; Silicon Dioxide/analysis
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  • 15
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    Publication Date: 2008-11-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Nov 20;456(7220):317-8. doi: 10.1038/456317a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020598" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Anniversaries and Special Events ; Biodiversity ; *Biological Evolution ; Epidemiology/trends ; Humans ; Models, Biological ; Mutagenesis ; Religion and Science ; Science/*trends ; Selection, Genetic
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  • 16
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gilbert, Natasha -- England -- Nature. 2008 Oct 9;455(7214):717. doi: 10.1038/455717a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18853513" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Asia, Southeastern ; Biodiversity ; Conservation of Natural Resources ; *Data Collection ; *Extinction, Biological ; Mammals/*physiology ; Population Density
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  • 17
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Oct 9;455(7214):707-8. doi: 10.1038/455707b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18843306" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Conservation of Natural Resources/*methods ; *Ecosystem ; *Extinction, Biological ; Greenhouse Effect
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  • 18
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    Nature Publishing Group (NPG)
    Publication Date: 2008-09-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Sep 18;455(7211):264. doi: 10.1038/455264a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18800080" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Geography ; *Maps as Topic
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  • 19
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Qiu, Jane -- England -- Nature. 2008 Oct 16;455(7215):850-2. doi: 10.1038/455850a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18923484" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/economics/methods/*trends ; Animals ; Biodiversity ; China ; Food Supply/standards ; Food, Genetically Modified/economics/standards/*utilization ; Humans ; Oryza/economics/*genetics/parasitology ; Plants, Genetically Modified ; Safety
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  • 20
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    Nature Publishing Group (NPG)
    Publication Date: 2008-03-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marris, Emma -- England -- Nature. 2008 Mar 27;452(7186):394-5. doi: 10.1038/452394a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18368084" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Domestic ; Animals, Wild ; Anura/*physiology ; Biodiversity ; Conservation of Natural Resources/*methods ; *Ecosystem ; Extinction, Biological ; Female ; Male ; Population Density
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  • 21
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    Nature Publishing Group (NPG)
    Publication Date: 2008-02-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marris, Emma -- England -- Nature. 2008 Feb 28;451(7182):1038. doi: 10.1038/4511038b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18305507" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biology/economics ; *Encyclopedias as Topic ; *Internet/economics ; Species Specificity
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  • 22
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    Nature Publishing Group (NPG)
    Publication Date: 2008-05-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Blow, Nathan -- England -- Nature. 2008 May 29;453(7195):687-90. doi: 10.1038/453687a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18509446" target="_blank"〉PubMed〈/a〉
    Keywords: Benchmarking ; Biodiversity ; Computational Biology/methods/standards/*trends ; Databases, Genetic ; Genomics/economics/*methods/standards/*trends ; Humans ; Intestines/microbiology ; Microbiology/economics/*trends ; Sequence Analysis, DNA/*methods/trends
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  • 23
    Publication Date: 2008-05-30
    Description: Animal-like multicellular fossils appeared towards the end of the Precambrian, followed by a rapid increase in the abundance and diversity of fossils during the Early Cambrian period, an event also known as the 'Cambrian explosion'. Changes in the environmental conditions at the Precambrian/Cambrian transition (about 542 Myr ago) have been suggested as a possible explanation for this event, but are still a matter of debate. Here we report molybdenum isotope signatures of black shales from two stratigraphically correlated sample sets with a depositional age of around 542 Myr. We find a transient molybdenum isotope signal immediately after the Precambrian/Cambrian transition. Using a box model of the oceanic molybdenum cycle, we find that intense upwelling of hydrogen sulphide-rich deep ocean water best explains the observed Early Cambrian molybdenum isotope signal. Our findings suggest that the Early Cambrian animal radiation may have been triggered by a major change in ocean circulation, terminating a long period during which the Proterozoic ocean was stratified, with sulphidic deep water.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wille, Martin -- Nagler, Thomas F -- Lehmann, Bernd -- Schroder, Stefan -- Kramers, Jan D -- England -- Nature. 2008 Jun 5;453(7196):767-9. doi: 10.1038/nature07072. Epub 2008 May 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Geological Sciences, University of Bern, Baltzerstrasse 3, 3012 Bern, Switzerland. martin.wille@anu.edu.au〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18509331" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Fossils ; Geologic Sediments/chemistry ; History, Ancient ; Hydrogen Sulfide/*metabolism ; Isotopes ; Molybdenum/analysis ; Oceans and Seas ; Seawater/*chemistry
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  • 24
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dance, Amber -- England -- Nature. 2008 Oct 9;455(7214):724-5. doi: 10.1038/455724a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18843336" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/methods ; Animals ; Biodiversity ; *Ecosystem ; *Soil ; Soil Microbiology
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  • 25
    Publication Date: 2008-10-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kirkpatrick, Mark -- Price, Trevor -- England -- Nature. 2008 Oct 2;455(7213):601-2. doi: 10.1038/455601a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18833264" target="_blank"〉PubMed〈/a〉
    Keywords: Africa, Eastern ; Animals ; Biodiversity ; Cichlids/classification/*genetics/*physiology ; Color ; Female ; Fish Proteins/genetics/metabolism ; Fresh Water ; *Genetic Speciation ; Male ; Mating Preference, Animal/*physiology ; Phenotype ; Pigmentation/genetics/*physiology ; Reproduction/physiology ; Rod Opsins/genetics/metabolism
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  • 26
    Publication Date: 2008-10-31
    Description: Global amphibian declines have often been attributed to disease, but ignorance of the relative importance and mode of action of potential drivers of infection has made it difficult to develop effective remediation. In a field study, here we show that the widely used herbicide, atrazine, was the best predictor (out of more than 240 plausible candidates) of the abundance of larval trematodes (parasitic flatworms) in the declining northern leopard frog Rana pipiens. The effects of atrazine were consistent across trematode taxa. The combination of atrazine and phosphate--principal agrochemicals in global corn and sorghum production--accounted for 74% of the variation in the abundance of these often debilitating larval trematodes (atrazine alone accounted for 51%). Analysis of field data supported a causal mechanism whereby both agrochemicals increase exposure and susceptibility to larval trematodes by augmenting snail intermediate hosts and suppressing amphibian immunity. A mesocosm experiment demonstrated that, relative to control tanks, atrazine tanks had immunosuppressed tadpoles, had significantly more attached algae and snails, and had tadpoles with elevated trematode loads, further supporting a causal relationship between atrazine and elevated trematode infections in amphibians. These results raise concerns about the role of atrazine and phosphate in amphibian declines, and illustrate the value of quantifying the relative importance of several possible drivers of disease risk while determining the mechanisms by which they facilitate disease emergence.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rohr, Jason R -- Schotthoefer, Anna M -- Raffel, Thomas R -- Carrick, Hunter J -- Halstead, Neal -- Hoverman, Jason T -- Johnson, Catherine M -- Johnson, Lucinda B -- Lieske, Camilla -- Piwoni, Marvin D -- Schoff, Patrick K -- Beasley, Val R -- England -- Nature. 2008 Oct 30;455(7217):1235-9. doi: 10.1038/nature07281.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Biology Department, University of South Florida, Tampa, Florida 33620, USA. jasonrohr@gmail.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18972018" target="_blank"〉PubMed〈/a〉
    Keywords: Agrochemicals/*pharmacology ; Animals ; Atrazine/pharmacology ; Biodiversity ; Disease Susceptibility/chemically induced/*veterinary ; Herbicides/pharmacology ; Larva/drug effects/physiology ; Phosphates/pharmacology ; Population Density ; Rana pipiens/immunology/*parasitology/*physiology ; Trematoda/*drug effects/growth & development/*physiology ; Trematode Infections/chemically induced/parasitology/*veterinary ; Wetlands
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  • 27
    Publication Date: 2008-05-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rull, Valenti -- Vegas-Vilarrubia, Teresa -- England -- Nature. 2008 May 1;453(7191):26. doi: 10.1038/453026a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18451832" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*legislation & jurisprudence ; International Cooperation ; Trust ; Venezuela
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  • 28
    Publication Date: 2008-11-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dunn, Christopher P -- England -- Nature. 2008 Nov 20;456(7220):315. doi: 10.1038/456315c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020597" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Botany/trends ; Conservation of Natural Resources/*trends ; *Cultural Diversity ; Gardening/trends ; Linguistics/trends
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  • 29
    Publication Date: 2008-11-21
    Description: Many species are currently moving to higher latitudes and altitudes. However, little is known about the factors that influence the future performance of range-expanding species in their new habitats. Here we show that range-expanding plant species from a riverine area were better defended against shoot and root enemies than were related native plant species growing in the same area. We grew fifteen plant species with and without non-coevolved polyphagous locusts and cosmopolitan, polyphagous aphids. Contrary to our expectations, the locusts performed more poorly on the range-expanding plant species than on the congeneric native plant species, whereas the aphids showed no difference. The shoot herbivores reduced the biomass of the native plants more than they did that of the congeneric range expanders. Also, the range-expanding plants developed fewer pathogenic effects in their root-zone soil than did the related native species. Current predictions forecast biodiversity loss due to limitations in the ability of species to adjust to climate warming conditions in their range. Our results strongly suggest that the plants that shift ranges towards higher latitudes and altitudes may include potential invaders, as the successful range expanders may experience less control by above-ground or below-ground enemies than the natives.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Engelkes, Tim -- Morrien, Elly -- Verhoeven, Koen J F -- Bezemer, T Martijn -- Biere, Arjen -- Harvey, Jeffrey A -- McIntyre, Lauren M -- Tamis, Wil L M -- van der Putten, Wim H -- England -- Nature. 2008 Dec 18;456(7224):946-8. doi: 10.1038/nature07474. Epub 2008 Nov 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Multitrophic Interactions, Netherlands Institute of Ecology (NIOO-KNAW), PO Box 40, 6666 ZG Heteren, The Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020504" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological/*physiology ; Altitude ; Animals ; Aphids/physiology ; Biodiversity ; Biomass ; *Ecosystem ; *Feeding Behavior ; Grasshoppers/physiology ; Plant Roots/*physiology ; Plant Shoots/*physiology ; Rivers ; Soil ; Temperature
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    Publication Date: 2008-02-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2008 Feb 7;451(7179):616. doi: 10.1038/451616b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18256630" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Automatic Data Processing/methods/*trends ; Biodiversity ; Genes, Plant/*genetics ; Phylogeny ; Plants/*classification/*genetics ; Reproducibility of Results ; Species Specificity
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  • 31
    Publication Date: 2008-05-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vale, Mariana M -- Alves, Maria Alice -- Pimm, Stuart L -- England -- Nature. 2008 May 1;453(7191):26. doi: 10.1038/453026b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18451831" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/legislation & jurisprudence/*methods ; Humans ; Internationality ; Population Groups/legislation & jurisprudence ; *Trust ; Venezuela
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  • 32
    Publication Date: 2008-03-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Evensen, Darrick T -- England -- Nature. 2008 Mar 20;452(7185):282. doi: 10.1038/452282a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18354458" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Diseases/epidemiology/*transmission ; Animals ; *Animals, Wild ; Biodiversity ; *Conservation of Natural Resources ; Humans ; *Public Opinion ; Zoonoses/*epidemiology/*transmission
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  • 33
    Publication Date: 2008-01-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chapron, Guillaume -- Arlettaz, Raphael -- England -- Nature. 2008 Jan 10;451(7175):127. doi: 10.1038/451127b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18185566" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bibliometrics ; Biodiversity ; Conservation of Natural Resources/*statistics & numerical data ; Ecology/manpower/*standards ; Ecosystem ; Research Personnel/*standards
    Print ISSN: 0028-0836
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  • 34
    Publication Date: 2008-01-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Venter, Oscar -- Meijaard, Erik -- Wilson, Kerrie -- England -- Nature. 2008 Jan 3;451(7174):16. doi: 10.1038/451016a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18172476" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*methods ; Ecology/methods ; Indonesia ; Industry/*economics ; Plant Oils/*economics ; *Trees
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  • 35
    Publication Date: 2008-10-04
    Description: Theoretically, divergent selection on sensory systems can cause speciation through sensory drive. However, empirical evidence is rare and incomplete. Here we demonstrate sensory drive speciation within island populations of cichlid fish. We identify the ecological and molecular basis of divergent evolution in the cichlid visual system, demonstrate associated divergence in male colouration and female preferences, and show subsequent differentiation at neutral loci, indicating reproductive isolation. Evidence is replicated in several pairs of sympatric populations and species. Variation in the slope of the environmental gradients explains variation in the progress towards speciation: speciation occurs on all but the steepest gradients. This is the most complete demonstration so far of speciation through sensory drive without geographical isolation. Our results also provide a mechanistic explanation for the collapse of cichlid fish species diversity during the anthropogenic eutrophication of Lake Victoria.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seehausen, Ole -- Terai, Yohey -- Magalhaes, Isabel S -- Carleton, Karen L -- Mrosso, Hillary D J -- Miyagi, Ryutaro -- van der Sluijs, Inke -- Schneider, Maria V -- Maan, Martine E -- Tachida, Hidenori -- Imai, Hiroo -- Okada, Norihiro -- England -- Nature. 2008 Oct 2;455(7213):620-6. doi: 10.1038/nature07285.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Zoology, University of Bern, Baltzerstr. 6, CH-3012 Bern, Switzerland. ole.seehausen@aqua.unibe.ch〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18833272" target="_blank"〉PubMed〈/a〉
    Keywords: Africa, Eastern ; Alleles ; Animals ; Biodiversity ; Cichlids/*genetics/*physiology ; Color ; Eutrophication ; Female ; Fish Proteins/genetics/metabolism ; Fresh Water ; Gene Flow ; *Genetic Speciation ; Geography ; Male ; Mating Preference, Animal/*physiology ; Phenotype ; Pigmentation/genetics/*physiology ; Reproduction/physiology ; Rod Opsins/genetics/metabolism
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  • 36
    Publication Date: 2008-11-14
    Description: Competition and predation are the most heavily investigated species interactions in ecology, dominating studies of species diversity maintenance. However, these two interactions are most commonly viewed highly asymmetrically. Competition for resources is seen as the primary interaction limiting diversity, with predation modifying what competition does, although theoretical models have long supported diverse views. Here we show, using a comprehensive three-trophic-level model, that competition and predation should be viewed symmetrically: these two interactions are equally able to either limit or promote diversity. Diversity maintenance requires within-species density feedback loops to be stronger than between-species feedback loops. We quantify the contributions of predation and competition to these loops in a simple, interpretable form, showing their equivalent potential to strengthen or weaken diversity maintenance. Moreover, we show that competition and predation can undermine each other, with the tendency of the stronger interaction to promote or limit diversity prevailing. The past failure to appreciate the symmetrical effects and interactions of competition and predation has unduly restricted diversity maintenance studies. A multitrophic perspective should be adopted to examine a greater variety of possible effects of predation than generally considered in the past. Conservation and management strategies need to be much more concerned with the implications of changes in the strengths of trophic interactions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chesson, Peter -- Kuang, Jessica J -- England -- Nature. 2008 Nov 13;456(7219):235-8. doi: 10.1038/nature07248.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA. pchesson@u.arizona.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19005554" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Competitive Behavior/*physiology ; Conservation of Natural Resources ; *Food Chain ; *Models, Biological ; Population Density ; Predatory Behavior/*physiology
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  • 37
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    Nature Publishing Group (NPG)
    Publication Date: 2008-06-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Frood, Arran -- England -- Nature. 2008 Jun 5;453(7196):717-8. doi: 10.1038/453717a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18528369" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Databases, Factual ; Ecology/*methods ; *Food Chain ; *Fossils ; Geologic Sediments ; *Models, Biological ; Paleontology/*methods ; Predatory Behavior ; Time Factors
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  • 38
    Publication Date: 2008-12-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Settele, Josef -- Biesmeijer, Jacobus -- Bommarco, Riccardo -- England -- Nature. 2008 Dec 4;456(7222):570. doi: 10.1038/456570a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19052603" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; China ; *Food, Genetically Modified ; Oryza/genetics/*metabolism ; Pest Control, Biological/*trends
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  • 39
    Publication Date: 2008-06-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Settele, Josef -- Spangenberg, Joachim -- Kuhn, Ingolf -- England -- Nature. 2008 Jun 12;453(7197):850. doi: 10.1038/453850b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18548047" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Environment ; Europe ; *Group Processes ; Research/*organization & administration
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  • 40
    Publication Date: 2009-09-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rockstrom, Johan -- Steffen, Will -- Noone, Kevin -- Persson, Asa -- Chapin, F Stuart 3rd -- Lambin, Eric F -- Lenton, Timothy M -- Scheffer, Marten -- Folke, Carl -- Schellnhuber, Hans Joachim -- Nykvist, Bjorn -- de Wit, Cynthia A -- Hughes, Terry -- van der Leeuw, Sander -- Rodhe, Henning -- Sorlin, Sverker -- Snyder, Peter K -- Costanza, Robert -- Svedin, Uno -- Falkenmark, Malin -- Karlberg, Louise -- Corell, Robert W -- Fabry, Victoria J -- Hansen, James -- Walker, Brian -- Liverman, Diana -- Richardson, Katherine -- Crutzen, Paul -- Foley, Jonathan A -- England -- Nature. 2009 Sep 24;461(7263):472-5. doi: 10.1038/461472a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stockholm Resilience Centre, Stockholm University, Kraftriket 2B, 10691 Stockholm, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19779433" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Civilization ; Conservation of Natural Resources/*methods/trends ; *Earth (Planet) ; Ecology/*methods/*trends ; *Ecosystem ; Extinction, Biological ; Fossils ; Green Chemistry Technology/*methods/trends ; Greenhouse Effect ; History, 20th Century ; History, 21st Century ; History, Ancient ; *Human Activities/history ; Humans ; Nitrogen/metabolism ; Phosphorus/metabolism
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  • 41
    Publication Date: 2009-12-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hall, Matthew -- Grim, John -- Tucker, Mary Evelyn -- England -- Nature. 2009 Dec 10;462(7274):720. doi: 10.1038/462720c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010666" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*methods ; *Religion and Science
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  • 42
    Publication Date: 2009-07-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cao, Lei -- Fox, Anthony D -- England -- Nature. 2009 Jul 9;460(7252):173. doi: 10.1038/460173b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19587744" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Birds ; China ; Conservation of Natural Resources/*trends ; Water Supply ; *Wetlands
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  • 43
    Publication Date: 2009-04-03
    Description: Explaining the ecological causes of evolutionary diversification is a major focus of biology, but surprisingly little has been said about the effects of evolutionary diversification on ecosystems. The number of species in an ecosystem and their traits are key predictors of many ecosystem-level processes, such as rates of productivity, biomass sequestration and decomposition. Here we demonstrate short-term ecosystem-level effects of adaptive radiation in the threespine stickleback (Gasterosteus aculeatus) over the past 10,000 years. These fish have undergone recent parallel diversification in several lakes in coastal British Columbia, resulting in the formation of two specialized species (benthic and limnetic) from a generalist ancestor. Using a mesocosm experiment, we demonstrate that this diversification has strong effects on ecosystems, affecting prey community structure, total primary production, and the nature of dissolved organic materials that regulate the spectral properties of light transmission in the system. However, these ecosystem effects do not simply increase in their relative strength with increasing specialization and species richness; instead, they reflect the complex and indirect consequences of ecosystem engineering by sticklebacks. It is well known that ecological factors influence adaptive radiation. We demonstrate that adaptive radiation, even over short timescales, can have profound effects on ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Harmon, Luke J -- Matthews, Blake -- Des Roches, Simone -- Chase, Jonathan M -- Shurin, Jonathan B -- Schluter, Dolph -- England -- Nature. 2009 Apr 30;458(7242):1167-70. doi: 10.1038/nature07974. Epub 2009 Apr 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Idaho, Moscow, Idaho 83844-3051, USA. lukeh@uidaho.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19339968" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biological Evolution ; Biomass ; British Columbia ; *Ecosystem ; Fishes/*classification/*physiology ; Food Chain ; Fresh Water ; Genetic Speciation ; Models, Biological ; Population Density ; Predatory Behavior
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  • 44
    Publication Date: 2008-12-02
    Description: The human distal gut harbours a vast ensemble of microbes (the microbiota) that provide important metabolic capabilities, including the ability to extract energy from otherwise indigestible dietary polysaccharides. Studies of a few unrelated, healthy adults have revealed substantial diversity in their gut communities, as measured by sequencing 16S rRNA genes, yet how this diversity relates to function and to the rest of the genes in the collective genomes of the microbiota (the gut microbiome) remains obscure. Studies of lean and obese mice suggest that the gut microbiota affects energy balance by influencing the efficiency of calorie harvest from the diet, and how this harvested energy is used and stored. Here we characterize the faecal microbial communities of adult female monozygotic and dizygotic twin pairs concordant for leanness or obesity, and their mothers, to address how host genotype, environmental exposure and host adiposity influence the gut microbiome. Analysis of 154 individuals yielded 9,920 near full-length and 1,937,461 partial bacterial 16S rRNA sequences, plus 2.14 gigabases from their microbiomes. The results reveal that the human gut microbiome is shared among family members, but that each person's gut microbial community varies in the specific bacterial lineages present, with a comparable degree of co-variation between adult monozygotic and dizygotic twin pairs. However, there was a wide array of shared microbial genes among sampled individuals, comprising an extensive, identifiable 'core microbiome' at the gene, rather than at the organismal lineage, level. Obesity is associated with phylum-level changes in the microbiota, reduced bacterial diversity and altered representation of bacterial genes and metabolic pathways. These results demonstrate that a diversity of organismal assemblages can nonetheless yield a core microbiome at a functional level, and that deviations from this core are associated with different physiological states (obese compared with lean).〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2677729/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2677729/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Turnbaugh, Peter J -- Hamady, Micah -- Yatsunenko, Tanya -- Cantarel, Brandi L -- Duncan, Alexis -- Ley, Ruth E -- Sogin, Mitchell L -- Jones, William J -- Roe, Bruce A -- Affourtit, Jason P -- Egholm, Michael -- Henrissat, Bernard -- Heath, Andrew C -- Knight, Rob -- Gordon, Jeffrey I -- AA09022/AA/NIAAA NIH HHS/ -- DK78669/DK/NIDDK NIH HHS/ -- ES012742/ES/NIEHS NIH HHS/ -- HD049024/HD/NICHD NIH HHS/ -- P01 DK078669/DK/NIDDK NIH HHS/ -- P01 DK078669-01/DK/NIDDK NIH HHS/ -- P30 DK056341/DK/NIDDK NIH HHS/ -- P30 DK056341-07/DK/NIDDK NIH HHS/ -- P30 DK056341-08/DK/NIDDK NIH HHS/ -- P50 ES012742/ES/NIEHS NIH HHS/ -- P50 ES012742-049001/ES/NIEHS NIH HHS/ -- R01 AA009022/AA/NIAAA NIH HHS/ -- R01 AA009022-10/AA/NIAAA NIH HHS/ -- R01 HD049024/HD/NICHD NIH HHS/ -- R01 HD049024-01/HD/NICHD NIH HHS/ -- T32 GM065103/GM/NIGMS NIH HHS/ -- T32 GM065103-07/GM/NIGMS NIH HHS/ -- UL1 TR000448/TR/NCATS NIH HHS/ -- England -- Nature. 2009 Jan 22;457(7228):480-4. doi: 10.1038/nature07540. Epub 2008 Nov 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Genome Sciences, Washington University School of Medicine, St Louis, Missouri 63108, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19043404" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Africa/ethnology ; Biodiversity ; Environment ; Europe/ethnology ; Feces/microbiology ; Female ; Gastrointestinal Tract/*microbiology ; Genotype ; Humans ; Metagenome/genetics/*physiology ; Missouri ; Molecular Sequence Data ; Mothers ; Obesity/*microbiology ; RNA, Ribosomal, 16S/analysis/genetics ; Thinness/*microbiology ; Twins, Dizygotic ; Twins, Monozygotic
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  • 45
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    Nature Publishing Group (NPG)
    Publication Date: 2009-11-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Erwin, Douglas -- England -- Nature. 2009 Nov 19;462(7271):282-3. doi: 10.1038/462282a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Paleobiology, National Museum of Natural History, Washington DC, USA. erwind@si.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19924193" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biological Evolution ; Fossils ; *Models, Biological ; Paleontology/*methods
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  • 46
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    Nature Publishing Group (NPG)
    Publication Date: 2009-03-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hendry, Andrew P -- England -- Nature. 2009 Mar 12;458(7235):162-4. doi: 10.1038/458162a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19279629" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biological Evolution ; *Genetic Speciation ; Humans ; Hybridization, Genetic ; Species Specificity ; Terminology as Topic
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  • 47
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    Nature Publishing Group (NPG)
    Publication Date: 2009-05-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seehausen, Ole -- England -- Nature. 2009 Apr 30;458(7242):1122-3. doi: 10.1038/4581122a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19407790" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; *Biological Evolution ; British Columbia ; *Ecosystem ; Fishes/*classification/*physiology ; Food Chain ; Fresh Water ; Genetic Speciation ; Models, Biological
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  • 48
    Publication Date: 2009-09-11
    Description: Geochemical data suggest that oxygenation of the Earth's atmosphere occurred in two broad steps. The first rise in atmospheric oxygen is thought to have occurred between approximately 2.45 and 2.2 Gyr ago, leading to a significant increase in atmospheric oxygen concentrations and concomitant oxygenation of the shallow surface ocean. The second increase in atmospheric oxygen appears to have taken place in distinct stages during the late Neoproterozoic era ( approximately 800-542 Myr ago), ultimately leading to oxygenation of the deep ocean approximately 580 Myr ago, but details of the evolution of atmospheric oxygenation remain uncertain. Here we use chromium (Cr) stable isotopes from banded iron formations (BIFs) to track the presence of Cr(VI) in Precambrian oceans, providing a time-resolved picture of the oxygenation history of the Earth's atmosphere-hydrosphere system. The geochemical behaviour of Cr is highly sensitive to the redox state of the surface environment because oxidative weathering processes produce the oxidized hexavalent [Cr(VI)] form. Oxidation of reduced trivalent [Cr(III)] chromium on land is accompanied by an isotopic fractionation, leading to enrichment of the mobile hexavalent form in the heavier isotope. Our fractionated Cr isotope data indicate the accumulation of Cr(VI) in ocean surface waters approximately 2.8 to 2.6 Gyr ago and a likely transient elevation in atmospheric and surface ocean oxygenation before the first great rise of oxygen 2.45-2.2 Gyr ago (the Great Oxidation Event). In approximately 1.88-Gyr-old BIFs we find that Cr isotopes are not fractionated, indicating a decline in atmospheric oxygen. Our findings suggest that the Great Oxidation Event did not lead to a unidirectional stepwise increase in atmospheric oxygen. In the late Neoproterozoic, we observe strong positive fractionations in Cr isotopes (delta(53)Cr up to +4.9 per thousand), providing independent support for increased surface oxygenation at that time, which may have stimulated rapid evolution of macroscopic multicellular life.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Frei, Robert -- Gaucher, Claudio -- Poulton, Simon W -- Canfield, Don E -- England -- Nature. 2009 Sep 10;461(7261):250-3. doi: 10.1038/nature08266.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Geography and Geology and Nordic Center for Earth Evolution (NordCEE), University of Copenhagen, Oster Voldgade 10, 1350 Copenhagen, Denmark.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19741707" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Atmosphere/*chemistry ; Biodiversity ; Chromium/*analysis/chemistry ; Chromium Isotopes ; History, Ancient ; Iron/analysis/metabolism ; Manganese Compounds/metabolism ; Oceans and Seas ; Oxidation-Reduction ; Oxides/metabolism ; Oxygen/analysis/*metabolism ; Seawater/chemistry
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  • 49
    Publication Date: 2009-12-25
    Description: The ranges of plants and animals are moving in response to recent changes in climate. As temperatures rise, ecosystems with 'nowhere to go', such as mountains, are considered to be more threatened. However, species survival may depend as much on keeping pace with moving climates as the climate's ultimate persistence. Here we present a new index of the velocity of temperature change (km yr(-1)), derived from spatial gradients ( degrees C km(-1)) and multimodel ensemble forecasts of rates of temperature increase ( degrees C yr(-1)) in the twenty-first century. This index represents the instantaneous local velocity along Earth's surface needed to maintain constant temperatures, and has a global mean of 0.42 km yr(-1) (A1B emission scenario). Owing to topographic effects, the velocity of temperature change is lowest in mountainous biomes such as tropical and subtropical coniferous forests (0.08 km yr(-1)), temperate coniferous forest, and montane grasslands. Velocities are highest in flooded grasslands (1.26 km yr(-1)), mangroves and deserts. High velocities suggest that the climates of only 8% of global protected areas have residence times exceeding 100 years. Small protected areas exacerbate the problem in Mediterranean-type and temperate coniferous forest biomes. Large protected areas may mitigate the problem in desert biomes. These results indicate management strategies for minimizing biodiversity loss from climate change. Montane landscapes may effectively shelter many species into the next century. Elsewhere, reduced emissions, a much expanded network of protected areas, or efforts to increase species movement may be necessary.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Loarie, Scott R -- Duffy, Philip B -- Hamilton, Healy -- Asner, Gregory P -- Field, Christopher B -- Ackerly, David D -- England -- Nature. 2009 Dec 24;462(7276):1052-5. doi: 10.1038/nature08649.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Carnegie Institution for Science, Department of Global Ecology, Stanford, California 94305, USA. loarie@stanford.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20033047" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Conservation of Natural Resources ; Ecosystem ; *Global Warming ; *Models, Biological ; Time Factors
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  • 50
    Publication Date: 2009-08-28
    Description: Cyanobacteria of the Synechococcus and Prochlorococcus genera are important contributors to photosynthetic productivity in the open oceans. Recently, core photosystem II (PSII) genes were identified in cyanophages and proposed to function in photosynthesis and in increasing viral fitness by supplementing the host production of these proteins. Here we show evidence for the presence of photosystem I (PSI) genes in the genomes of viruses that infect these marine cyanobacteria, using pre-existing metagenomic data from the global ocean sampling expedition as well as from viral biomes. The seven cyanobacterial core PSI genes identified in this study, psaA, B, C, D, E, K and a unique J and F fusion, form a cluster in cyanophage genomes, suggestive of selection for a distinct function in the virus life cycle. The existence of this PSI cluster was confirmed with overlapping and long polymerase chain reaction on environmental DNA from the Northern Line Islands. Potentially, the seven proteins encoded by the viral genes are sufficient to form an intact monomeric PSI complex. Projection of viral predicted peptides on the cyanobacterial PSI crystal structure suggested that the viral-PSI components might provide a unique way of funnelling reducing power from respiratory and other electron transfer chains to the PSI.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4605144/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4605144/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sharon, Itai -- Alperovitch, Ariella -- Rohwer, Forest -- Haynes, Matthew -- Glaser, Fabian -- Atamna-Ismaeel, Nof -- Pinter, Ron Y -- Partensky, Frederic -- Koonin, Eugene V -- Wolf, Yuri I -- Nelson, Nathan -- Beja, Oded -- Z99 LM999999/Intramural NIH HHS/ -- England -- Nature. 2009 Sep 10;461(7261):258-62. doi: 10.1038/nature08284. Epub 2009 Aug 26.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19710652" target="_blank"〉PubMed〈/a〉
    Keywords: Adhesins, Bacterial/chemistry/genetics ; Amino Acid Sequence ; Bacteriophages/*genetics/metabolism ; Biodiversity ; Genes, Bacterial/genetics ; Genes, Viral/*genetics ; Genome, Bacterial/genetics ; Genome, Viral/*genetics ; Geography ; Lipoproteins/chemistry/genetics ; Models, Molecular ; Molecular Sequence Data ; Oceans and Seas ; Open Reading Frames/genetics ; Oxidation-Reduction ; Photosynthesis/genetics ; Photosystem I Protein Complex/chemistry/*genetics ; Phylogeny ; Polymerase Chain Reaction ; Prochlorococcus/*virology ; Protein Conformation ; Seawater/*microbiology ; Synechococcus/*virology ; Viral Proteins/chemistry/genetics/metabolism ; Water Microbiology
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  • 51
    Publication Date: 2009-09-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pysek, Petr -- Hulme, Philip E -- England -- Nature. 2009 Jul 16;460(7253):324. doi: 10.1038/460324b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19606125" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Conservation of Natural Resources ; Ecology/*trends ; *Ecosystem ; Population Dynamics
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  • 52
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    Nature Publishing Group (NPG)
    Publication Date: 2009-11-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marris, Emma -- England -- Nature. 2009 Nov 5;462(7269):30-2. doi: 10.1038/462030a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19890304" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Conservation of Natural Resources/*methods ; *Ecosystem ; Internationality ; Netherlands ; *Wilderness
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  • 53
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    Nature Publishing Group (NPG)
    Publication Date: 2009-07-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marris, Emma -- England -- Nature. 2009 Jul 23;460(7254):450-3. doi: 10.1038/460450a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19626087" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Ecology/methods ; *Ecosystem ; Hawaii ; Humans ; Trees
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  • 54
    Publication Date: 2009-12-25
    Description: Sequencing of bacterial and archaeal genomes has revolutionized our understanding of the many roles played by microorganisms. There are now nearly 1,000 completed bacterial and archaeal genomes available, most of which were chosen for sequencing on the basis of their physiology. As a result, the perspective provided by the currently available genomes is limited by a highly biased phylogenetic distribution. To explore the value added by choosing microbial genomes for sequencing on the basis of their evolutionary relationships, we have sequenced and analysed the genomes of 56 culturable species of Bacteria and Archaea selected to maximize phylogenetic coverage. Analysis of these genomes demonstrated pronounced benefits (compared to an equivalent set of genomes randomly selected from the existing database) in diverse areas including the reconstruction of phylogenetic history, the discovery of new protein families and biological properties, and the prediction of functions for known genes from other organisms. Our results strongly support the need for systematic 'phylogenomic' efforts to compile a phylogeny-driven 'Genomic Encyclopedia of Bacteria and Archaea' in order to derive maximum knowledge from existing microbial genome data as well as from genome sequences to come.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073058/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073058/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wu, Dongying -- Hugenholtz, Philip -- Mavromatis, Konstantinos -- Pukall, Rudiger -- Dalin, Eileen -- Ivanova, Natalia N -- Kunin, Victor -- Goodwin, Lynne -- Wu, Martin -- Tindall, Brian J -- Hooper, Sean D -- Pati, Amrita -- Lykidis, Athanasios -- Spring, Stefan -- Anderson, Iain J -- D'haeseleer, Patrik -- Zemla, Adam -- Singer, Mitchell -- Lapidus, Alla -- Nolan, Matt -- Copeland, Alex -- Han, Cliff -- Chen, Feng -- Cheng, Jan-Fang -- Lucas, Susan -- Kerfeld, Cheryl -- Lang, Elke -- Gronow, Sabine -- Chain, Patrick -- Bruce, David -- Rubin, Edward M -- Kyrpides, Nikos C -- Klenk, Hans-Peter -- Eisen, Jonathan A -- R01 GM054592-09/GM/NIGMS NIH HHS/ -- R01 GM067012-04/GM/NIGMS NIH HHS/ -- England -- Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉DOE Joint Genome Institute, Walnut Creek, California 94598, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20033048" target="_blank"〉PubMed〈/a〉
    Keywords: Actins/chemistry ; Amino Acid Sequence ; Archaea/*classification/*genetics ; Bacteria/*classification/*genetics ; Bacterial Proteins/chemistry ; Biodiversity ; Databases, Genetic ; Genes, rRNA/genetics ; Genome, Archaeal/*genetics ; Genome, Bacterial/*genetics ; Models, Molecular ; Molecular Sequence Data ; *Phylogeny ; Protein Structure, Tertiary ; Sequence Alignment
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  • 55
    Publication Date: 2015-10-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2015 Oct 22;526(7574):488-9. doi: 10.1038/526488a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26490598" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Conservation of Natural Resources/economics/*legislation & jurisprudence ; Cuba ; Gulf of Mexico ; International Cooperation/*legislation & jurisprudence ; Mexico ; *Sharks ; United States
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  • 56
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    Nature Publishing Group (NPG)
    Publication Date: 2015-02-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kemp, Christopher -- England -- Nature. 2015 Feb 19;518(7539):292-4. doi: 10.1038/518292a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25693545" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Chiroptera/classification ; Classification/*methods ; Conservation of Natural Resources ; *Museums ; Natural History/economics/*manpower/*trends
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  • 57
    Publication Date: 2015-05-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kennett, Rod -- Danielsen, Finn -- Silvius, Kirsten M -- England -- Nature. 2015 May 14;521(7551):161. doi: 10.1038/521161d.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Australian Institute for Aboriginal and Torres Strait Islander Studies, Canberra, Australia. ; NORDECO, Copenhagen, Denmark. ; Virginia Tech University, Blacksburg, Virginia, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25971501" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*methods ; Data Collection ; Databases, Factual ; *Volunteers
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  • 58
    Publication Date: 2015-04-10
    Description: Continuing degradation of coral reef ecosystems has generated substantial interest in how management can support reef resilience. Fishing is the primary source of diminished reef function globally, leading to widespread calls for additional marine reserves to recover fish biomass and restore key ecosystem functions. Yet there are no established baselines for determining when these conservation objectives have been met or whether alternative management strategies provide similar ecosystem benefits. Here we establish empirical conservation benchmarks and fish biomass recovery timelines against which coral reefs can be assessed and managed by studying the recovery potential of more than 800 coral reefs along an exploitation gradient. We show that resident reef fish biomass in the absence of fishing (B0) averages approximately 1,000 kg ha(-1), and that the vast majority (83%) of fished reefs are missing more than half their expected biomass, with severe consequences for key ecosystem functions such as predation. Given protection from fishing, reef fish biomass has the potential to recover within 35 years on average and less than 60 years when heavily depleted. Notably, alternative fisheries restrictions are largely (64%) successful at maintaining biomass above 50% of B0, sustaining key functions such as herbivory. Our results demonstrate that crucial ecosystem functions can be maintained through a range of fisheries restrictions, allowing coral reef managers to develop recovery plans that meet conservation and livelihood objectives in areas where marine reserves are not socially or politically feasible solutions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacNeil, M Aaron -- Graham, Nicholas A J -- Cinner, Joshua E -- Wilson, Shaun K -- Williams, Ivor D -- Maina, Joseph -- Newman, Steven -- Friedlander, Alan M -- Jupiter, Stacy -- Polunin, Nicholas V C -- McClanahan, Tim R -- England -- Nature. 2015 Apr 16;520(7547):341-4. doi: 10.1038/nature14358. Epub 2015 Apr 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Australian Institute of Marine Science, PMB 3 Townsville MC, Townsville, Queensland 4810, Australia [2] Department of Mathematics and Statistics, Dalhousie University, Halifax, Nova Scotia B3H 3J5, Canada [3] Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia. ; Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811, Australia. ; 1] Department of Parks and Wildlife, Kensington, Perth, Western Australia 6151, Australia [2] Oceans Institute, University of Western Australia, Crawley, Western Australia 6009, Australia. ; Coral Reef Ecosystems Division, NOAA Pacific Islands Fisheries Science Center, Honolulu, Hawaii 96818, USA. ; 1] Australian Research Council Centre of Excellence for Environmental Decisions (CEED), University of Queensland, Brisbane, St Lucia, Queensland 4074, Australia [2] Wildlife Conservation Society, Marine Programs, Bronx, New York 10460, USA. ; School of Marine Science and Technology, Newcastle University, Newcastle upon Tyne NE1 7RU, UK. ; 1] Fisheries Ecology Research Lab, Department of Biology, University of Hawaii, Honolulu, Hawaii 96822, USA [2] Pristine Seas-National Geographic, Washington DC 20036, USA. ; Wildlife Conservation Society, Marine Programs, Bronx, New York 10460, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25855298" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Biomass ; Conservation of Natural Resources/*methods/statistics & numerical data/*trends ; *Coral Reefs ; *Ecosystem ; Fisheries/*methods/standards/*statistics & numerical data ; Fishes/*physiology ; Herbivory ; Population Dynamics ; Predatory Behavior ; Time Factors
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  • 59
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    Nature Publishing Group (NPG)
    Publication Date: 2015-09-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gould, Julie -- England -- Nature. 2015 Sep 24;525(7570):S18. doi: 10.1038/525S18a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉NatureJobs in London.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26398735" target="_blank"〉PubMed〈/a〉
    Keywords: Administration, Inhalation ; Administration, Oral ; Biodiversity ; Biomedical Research/legislation & jurisprudence/*trends ; Brain/drug effects/metabolism ; Cannabinoids/*administration & dosage/adverse effects/*pharmacology/therapeutic ; use ; Cannabis/*chemistry/*classification ; Drug Discovery ; Endocannabinoids/*metabolism ; Evolution, Molecular ; Humans ; Medical Marijuana/administration & dosage/adverse effects/chemistry/*therapeutic ; use ; Phylogeny ; Receptors, Cannabinoid/metabolism ; Terpenes/administration & dosage/chemistry/pharmacology/therapeutic use
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  • 60
    Publication Date: 2015-04-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Jian -- Huang, Xiaolei -- England -- Nature. 2015 Apr 23;520(7548):436. doi: 10.1038/520436d.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Aarhus University, Denmark. ; Fujian Agriculture and Forestry University, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25903615" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollution/analysis ; Biodiversity ; China ; Crowdsourcing/economics/*instrumentation ; Environmental Monitoring/*instrumentation ; Mobile Applications/*supply & distribution/*utilization ; Organizations/economics/organization & administration
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  • 61
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    Nature Publishing Group (NPG)
    Publication Date: 2015-05-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gould, Julie -- England -- Nature. 2015 May 21;521(7552):S48-9. doi: 10.1038/521S48a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25992670" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bees/classification/*physiology ; Biodiversity ; *Pollination
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  • 62
    Publication Date: 2015-05-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Paxton, Robert -- Brown, Mark -- Kuhlmann, Michael -- Goulson, Dave -- Decourtye, Axel -- Willmer, Pat -- Bonmatin, Jean-Mark -- England -- Nature. 2015 May 21;521(7552):S57-9. doi: 10.1038/521S57a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Martin Luther University Halle-Wittenberg, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25992674" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Diseases/epidemiology/parasitology/virology ; Animals ; Animals, Wild ; Beekeeping/manpower/methods ; *Bees/classification/parasitology/physiology/virology ; Biodiversity ; Classification ; Conservation of Natural Resources/methods/trends ; Endangered Species ; Insecticides/adverse effects/toxicity ; Introduced Species ; Organic Agriculture/methods/trends ; Population Density ; Research/*trends ; Research Personnel ; Stress, Physiological ; Varroidae/pathogenicity
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  • 63
    Publication Date: 2015-01-22
    Description: Climate-induced coral bleaching is among the greatest current threats to coral reefs, causing widespread loss of live coral cover. Conditions under which reefs bounce back from bleaching events or shift from coral to algal dominance are unknown, making it difficult to predict and plan for differing reef responses under climate change. Here we document and predict long-term reef responses to a major climate-induced coral bleaching event that caused unprecedented region-wide mortality of Indo-Pacific corals. Following loss of 〉90% live coral cover, 12 of 21 reefs recovered towards pre-disturbance live coral states, while nine reefs underwent regime shifts to fleshy macroalgae. Functional diversity of associated reef fish communities shifted substantially following bleaching, returning towards pre-disturbance structure on recovering reefs, while becoming progressively altered on regime shifting reefs. We identified threshold values for a range of factors that accurately predicted ecosystem response to the bleaching event. Recovery was favoured when reefs were structurally complex and in deeper water, when density of juvenile corals and herbivorous fishes was relatively high and when nutrient loads were low. Whether reefs were inside no-take marine reserves had no bearing on ecosystem trajectory. Although conditions governing regime shift or recovery dynamics were diverse, pre-disturbance quantification of simple factors such as structural complexity and water depth accurately predicted ecosystem trajectories. These findings foreshadow the likely divergent but predictable outcomes for reef ecosystems in response to climate change, thus guiding improved management and adaptation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Graham, Nicholas A J -- Jennings, Simon -- MacNeil, M Aaron -- Mouillot, David -- Wilson, Shaun K -- England -- Nature. 2015 Feb 5;518(7537):94-7. doi: 10.1038/nature14140. Epub 2015 Jan 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811 Australia. ; 1] Centre for Environment, Fisheries and Aquaculture Science, Pakefield Road, Lowestoft NR33 OHT, UK [2] School of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, UK. ; 1] Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811 Australia [2] Australian Institute of Marine Science, PMB 3 Townsville MC, Townsville, Queensland 4810, Australia. ; 1] Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland 4811 Australia [2] ECOSYM, UMR CNRS-UM2 5119, Universite Montpellier 2, 34095 Montpellier Cedex, France. ; 1] Department of Parks and Wildlife, Kensington, Perth, Western Australia 6151, Australia [2] School of Plant Biology, Oceans Institute, University of Western Australia, Crawley, Western Australia 6009, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25607371" target="_blank"〉PubMed〈/a〉
    Keywords: Acclimatization ; Animals ; Anthozoa/*growth & development/*physiology ; Biodiversity ; *Climate Change ; *Coral Reefs ; *Ecosystem ; Fishes/physiology ; Indian Ocean ; Pacific Ocean ; Population Dynamics ; Seawater/analysis ; Seaweed/physiology ; Seychelles ; Symbiosis ; Tropical Climate
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  • 64
    Publication Date: 2015-02-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhou, Zhao-Min -- England -- Nature. 2015 Feb 19;518(7539):303. doi: 10.1038/518303c.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Yunnan Public Security Bureau for Forests, Kunming, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25693554" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; China ; Conservation of Natural Resources/economics/*legislation & jurisprudence ; Crime/economics/*legislation & jurisprudence ; Endangered Species/economics/*legislation & jurisprudence ; *Horns ; Medicine, Chinese Traditional/economics
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  • 65
    Publication Date: 2015-03-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kotiaho, Janne S -- England -- Nature. 2015 Mar 5;519(7541):33. doi: 10.1038/519033a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Jyvaskyla, Finland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25739622" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*methods/*statistics & numerical data ; *Ecosystem ; Finland ; Forestry/methods/statistics & numerical data ; Forests
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    Publication Date: 2015-12-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Massante, Jhonny Capichoni -- England -- Nature. 2015 Dec 3;528(7580):39. doi: 10.1038/528039c.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Federal University Fluminense, Niteroi, Rio de Janeiro, Brazil.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26632581" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Cities ; *Disasters/prevention & control ; *Ecosystem ; Humans ; *Mining ; Rainforest ; Water Pollutants/*adverse effects ; Water Supply
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  • 67
    Publication Date: 2015-09-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cord, Anna F -- Seppelt, Ralf -- Turner, Woody -- England -- Nature. 2015 Sep 3;525(7567):33. doi: 10.1038/525033a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany. ; NASA, Washington DC, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26333459" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Biofuels/supply & distribution ; Conservation of Natural Resources/*statistics & numerical data ; Ecology/*methods ; *Ecosystem ; Environmental Monitoring/instrumentation/*methods ; *Goals ; *Spacecraft ; United Nations
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    Nature Publishing Group (NPG)
    Publication Date: 2015-09-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Laursen, Lucas -- England -- Nature. 2015 Sep 24;525(7570):S4-5. doi: 10.1038/525S4a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26398737" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Cannabis/chemistry/*classification/genetics ; *Classification ; Drug and Narcotic Control ; Evolution, Molecular ; Humans ; Medical Marijuana/classification ; Phylogeny ; Species Specificity
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  • 69
    Publication Date: 2015-12-04
    Description: In recent years, several associations between common chronic human disorders and altered gut microbiome composition and function have been reported. In most of these reports, treatment regimens were not controlled for and conclusions could thus be confounded by the effects of various drugs on the microbiota, which may obscure microbial causes, protective factors or diagnostically relevant signals. Our study addresses disease and drug signatures in the human gut microbiome of type 2 diabetes mellitus (T2D). Two previous quantitative gut metagenomics studies of T2D patients that were unstratified for treatment yielded divergent conclusions regarding its associated gut microbial dysbiosis. Here we show, using 784 available human gut metagenomes, how antidiabetic medication confounds these results, and analyse in detail the effects of the most widely used antidiabetic drug metformin. We provide support for microbial mediation of the therapeutic effects of metformin through short-chain fatty acid production, as well as for potential microbiota-mediated mechanisms behind known intestinal adverse effects in the form of a relative increase in abundance of Escherichia species. Controlling for metformin treatment, we report a unified signature of gut microbiome shifts in T2D with a depletion of butyrate-producing taxa. These in turn cause functional microbiome shifts, in part alleviated by metformin-induced changes. Overall, the present study emphasizes the need to disentangle gut microbiota signatures of specific human diseases from those of medication.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681099/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681099/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Forslund, Kristoffer -- Hildebrand, Falk -- Nielsen, Trine -- Falony, Gwen -- Le Chatelier, Emmanuelle -- Sunagawa, Shinichi -- Prifti, Edi -- Vieira-Silva, Sara -- Gudmundsdottir, Valborg -- Krogh Pedersen, Helle -- Arumugam, Manimozhiyan -- Kristiansen, Karsten -- Voigt, Anita Yvonne -- Vestergaard, Henrik -- Hercog, Rajna -- Igor Costea, Paul -- Kultima, Jens Roat -- Li, Junhua -- Jorgensen, Torben -- Levenez, Florence -- Dore, Joel -- MetaHIT consortium -- Nielsen, H Bjorn -- Brunak, Soren -- Raes, Jeroen -- Hansen, Torben -- Wang, Jun -- Ehrlich, S Dusko -- Bork, Peer -- Pedersen, Oluf -- England -- Nature. 2015 Dec 10;528(7581):262-6. doi: 10.1038/nature15766. Epub 2015 Dec 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉European Molecular Biology Laboratory, Structural and Computational Biology Unit, 69117 Heidelberg, Germany. ; VIB Center for the Biology of Disease, Katholieke Universiteit Leuven, 3000 Leuven, Belgium. ; Department of Bioscience Engineering, Vrije Universiteit Brussel, 1040 Brussels, Belgium. ; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark. ; Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Molecular Bacteriology, Katholieke Universiteit Leuven, 3000 Leuven, Belgium. ; MICALIS, Institut National de la Recherche Agronomique, 78352 Jouy en Josas, France. ; Metagenopolis, Institut National de la Recherche Agronomique, 78352 Jouy en Josas, France. ; Institute of Cardiometabolism and Nutrition, 75013 Paris, France. ; Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, 2800 Kongens Lyngby, Denmark. ; Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark. ; Department of Applied Tumor Biology, Institute of Pathology, University Hospital Heidelberg, 69120 Heidelberg, Germany. ; Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, 69120 Heidelberg, Germany. ; Bejing Genomics Institute (BGI)-Shenzhen, 518083 Shenzhen, China. ; Research Centre for Prevention and Health, Capital Region of Denmark, 2600 Glostrup, Denmark. ; Department of Public Health, Faculty of Health and Medical Sciences, University of Copenhagen, 2600 Copenhagen, Denmark. ; Faculty of Medicine, University of Aalborg, 9100 Aalborg, Denmark. ; Novo Nordisk Foundation Center for Protein Research, Disease Systems Biology, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark. ; Faculty of Health Sciences, University of Southern Denmark, 5000 Odense, Denmark. ; Princess Al Jawhara Albrahim Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, 80205 Jeddah, Saudi Arabia. ; Macau University of Science and Technology, Avenida Wai Long, Taipa, Macau, China. ; Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, Hong Kong. ; Centre for Host-Microbiome Interactions, Dental Institute Central Office, Guy's Hospital, King's College London, London SE1 9RT , UK. ; Max Delbruck Centre for Molecular Medicine, 13125 Berlin, Germany. ; Department of Bioinformatics, University of Wuerzburg, 97074 Wurzburg, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26633628" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Diabetes Mellitus, Type 2/drug therapy/*microbiology ; Female ; Gastrointestinal Microbiome/*drug effects/genetics/*physiology ; Humans ; Hypoglycemic Agents/pharmacology/therapeutic use ; Male ; Metagenome/drug effects/physiology ; Metformin/*pharmacology/therapeutic use ; RNA, Ribosomal, 16S/genetics
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  • 70
    Publication Date: 2015-07-24
    Description: Sedimentary rocks deposited across the Proterozoic-Phanerozoic transition record extreme climate fluctuations, a potential rise in atmospheric oxygen or re-organization of the seafloor redox landscape, and the initial diversification of animals. It is widely assumed that the inferred redox change facilitated the observed trends in biodiversity. Establishing this palaeoenvironmental context, however, requires that changes in marine redox structure be tracked by means of geochemical proxies and translated into estimates of atmospheric oxygen. Iron-based proxies are among the most effective tools for tracking the redox chemistry of ancient oceans. These proxies are inherently local, but have global implications when analysed collectively and statistically. Here we analyse about 4,700 iron-speciation measurements from shales 2,300 to 360 million years old. Our statistical analyses suggest that subsurface water masses in mid-Proterozoic oceans were predominantly anoxic and ferruginous (depleted in dissolved oxygen and iron-bearing), but with a tendency towards euxinia (sulfide-bearing) that is not observed in the Neoproterozoic era. Analyses further indicate that early animals did not experience appreciable benthic sulfide stress. Finally, unlike proxies based on redox-sensitive trace-metal abundances, iron geochemical data do not show a statistically significant change in oxygen content through the Ediacaran and Cambrian periods, sharply constraining the magnitude of the end-Proterozoic oxygen increase. Indeed, this re-analysis of trace-metal data is consistent with oxygenation continuing well into the Palaeozoic era. Therefore, if changing redox conditions facilitated animal diversification, it did so through a limited rise in oxygen past critical functional and ecological thresholds, as is seen in modern oxygen minimum zone benthic animal communities.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sperling, Erik A -- Wolock, Charles J -- Morgan, Alex S -- Gill, Benjamin C -- Kunzmann, Marcus -- Halverson, Galen P -- Macdonald, Francis A -- Knoll, Andrew H -- Johnston, David T -- England -- Nature. 2015 Jul 23;523(7561):451-4. doi: 10.1038/nature14589.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138, USA [2] Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, California 90089, USA. ; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA. ; Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138, USA. ; Department of Geosciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA. ; Department of Earth and Planetary Sciences/GEOTOP, McGill University, Montreal, Quebec, H3A 0E8, Canada. ; 1] Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138, USA [2] Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26201598" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Atmosphere/chemistry ; Biodiversity ; Geologic Sediments/chemistry ; History, Ancient ; Iron/*analysis/*chemistry ; Oceans and Seas ; Oxidation-Reduction ; Oxygen/*analysis/*chemistry/metabolism ; Seawater/chemistry ; Sulfides/metabolism ; Time Factors
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  • 71
    Publication Date: 2015-11-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Whiteman, Gail -- Hoster, Harry -- England -- Nature. 2015 Nov 5;527(7576):38. doi: 10.1038/527038a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Lancaster University, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26536947" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Climate ; Congresses as Topic ; Conservation of Natural Resources/economics/*legislation & jurisprudence ; Environmental Policy/*legislation & jurisprudence ; Health ; Humans ; Paris ; Urban Renewal/trends ; Vehicle Emissions/*analysis/legislation & jurisprudence/*prevention & control
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  • 72
    Publication Date: 2015-11-06
    Description: Over two centuries of economic growth have put undeniable pressure on the ecological systems that underpin human well-being. While it is agreed that these pressures are increasing, views divide on how they may be alleviated. Some suggest technological advances will automatically keep us from transgressing key environmental thresholds; others that policy reform can reconcile economic and ecological goals; while a third school argues that only a fundamental shift in societal values can keep human demands within the Earth's ecological limits. Here we use novel integrated analysis of the energy-water-food nexus, rural land use (including biodiversity), material flows and climate change to explore whether mounting ecological pressures in Australia can be reversed, while the population grows and living standards improve. We show that, in the right circumstances, economic and environmental outcomes can be decoupled. Although economic growth is strong across all scenarios, environmental performance varies widely: pressures are projected to more than double, stabilize or fall markedly by 2050. However, we find no evidence that decoupling will occur automatically. Nor do we find that a shift in societal values is required. Rather, extensions of current policies that mobilize technology and incentivize reduced pressure account for the majority of differences in environmental performance. Our results show that Australia can make great progress towards sustainable prosperity, if it chooses to do so.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hatfield-Dodds, Steve -- Schandl, Heinz -- Adams, Philip D -- Baynes, Timothy M -- Brinsmead, Thomas S -- Bryan, Brett A -- Chiew, Francis H S -- Graham, Paul W -- Grundy, Mike -- Harwood, Tom -- McCallum, Rebecca -- McCrea, Rod -- McKellar, Lisa E -- Newth, David -- Nolan, Martin -- Prosser, Ian -- Wonhas, Alex -- England -- Nature. 2015 Nov 5;527(7576):49-53. doi: 10.1038/nature16065.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉CSIRO, Black Mountain Laboratories, Acton, ACT 2601, Australia. ; Victoria University, Flinders Street, Melbourne, VIC 3000, Australia. ; CSIRO, Julius Avenue, North Ryde, NSW 2113, Australia. ; CSIRO, Energy Centre, Mayfield West, NSW 2304, Australia. ; CSIRO, Waite Campus, Urrbrae, SA 5064, Australia. ; CSIRO, Queensland Biosciences Precinct, St Lucia, QLD 4067, Australia. ; CSIRO, Ecosciences Precinct, Dutton Park, QLD 4102, Australia. ; CSIRO, Yarralumla Laboratories, Yarralumla, ACT 2601, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26536956" target="_blank"〉PubMed〈/a〉
    Keywords: Australia ; Biodiversity ; Climate Change/*economics ; Conservation of Energy Resources ; *Conservation of Natural Resources/economics/legislation & jurisprudence/trends ; *Economic Development/legislation & jurisprudence/trends ; *Environmental Policy/economics/legislation & jurisprudence/trends ; Food Supply ; *Models, Economic ; *Policy Making ; Politics ; Water Supply
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  • 73
    Publication Date: 2016-04-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kotiaho, Janne S -- ten Brink, Ben -- Harris, Jim -- England -- Nature. 2016 Apr 7;532(7597):37. doi: 10.1038/532037c.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Jyvaskyla, Finland. ; PBL-Netherlands Environmental Assessment Agency, The Netherlands. ; Cranfield University, Bedfordshire, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27078561" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*methods ; *Ecosystem ; Human Activities ; Reference Standards ; *Wilderness
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  • 74
    Publication Date: 2016-04-01
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nazareno, Alison Goncalves -- Vitule, Jean Ricardo Simoes -- England -- Nature. 2016 Mar 31;531(7596):580. doi: 10.1038/531580e.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Sao Paulo, Brazil. ; Federal University of Parana, Brazil.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27029271" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Brazil ; Disasters/*statistics & numerical data ; Environmental Pollution/prevention & control/*statistics & numerical data ; *Mining
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  • 75
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-02-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Heffernan, Olive -- England -- Nature. 2016 Feb 4;530(7588):20-2. doi: 10.1038/530020a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26842039" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture ; Atmosphere/*analysis/chemistry ; Biodiversity ; Desert Climate ; Droughts/statistics & numerical data ; Global Warming/statistics & numerical data ; *Hot Temperature ; Models, Theoretical ; Ozone/analysis ; Rain ; Soot/analysis ; Time Factors ; *Tropical Climate ; *Uncertainty
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  • 76
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-02-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Roy, Helen -- England -- Nature. 2016 Feb 18;530(7590):281. doi: 10.1038/530281d.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉NERC Centre for Ecology and Hydrology, Wallingford, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26887485" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Diseases/epidemiology/*microbiology ; Animals ; Animals, Wild/*microbiology ; Biodiversity ; Biological Evolution ; Endangered Species/statistics & numerical data ; Host Specificity ; Humans ; Introduced Species/*statistics & numerical data
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  • 77
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2016-04-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rodriguez, Barbra -- England -- Nature. 2016 Apr 21;532(7599):403-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27127819" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Animal Migration ; Animals ; Biodiversity ; Climate Change/economics/*statistics & numerical data ; Ecology/economics/manpower/*methods/*trends ; *Ecosystem ; Plants ; Research/economics/manpower/*trends ; *Research Design ; Research Personnel ; *Uncertainty ; Ursidae ; *Weather
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  • 78
    Publication Date: 2016-05-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Davis, Andrew R -- Broad, Allison -- England -- Nature. 2016 May 5;533(7601):36. doi: 10.1038/533036a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Wollongong, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27147022" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aquatic Organisms ; Biodiversity ; Conservation of Natural Resources/*methods/trends ; *Ecosystem ; Ships/*methods
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  • 79
    Publication Date: 2015-12-25
    Description: Earth is home to a remarkable diversity of plant forms and life histories, yet comparatively few essential trait combinations have proved evolutionarily viable in today's terrestrial biosphere. By analysing worldwide variation in six major traits critical to growth, survival and reproduction within the largest sample of vascular plant species ever compiled, we found that occupancy of six-dimensional trait space is strongly concentrated, indicating coordination and trade-offs. Three-quarters of trait variation is captured in a two-dimensional global spectrum of plant form and function. One major dimension within this plane reflects the size of whole plants and their parts; the other represents the leaf economics spectrum, which balances leaf construction costs against growth potential. The global plant trait spectrum provides a backdrop for elucidating constraints on evolution, for functionally qualifying species and ecosystems, and for improving models that predict future vegetation based on continuous variation in plant form and function.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Diaz, Sandra -- Kattge, Jens -- Cornelissen, Johannes H C -- Wright, Ian J -- Lavorel, Sandra -- Dray, Stephane -- Reu, Bjorn -- Kleyer, Michael -- Wirth, Christian -- Prentice, I Colin -- Garnier, Eric -- Bonisch, Gerhard -- Westoby, Mark -- Poorter, Hendrik -- Reich, Peter B -- Moles, Angela T -- Dickie, John -- Gillison, Andrew N -- Zanne, Amy E -- Chave, Jerome -- Wright, S Joseph -- Sheremet'ev, Serge N -- Jactel, Herve -- Baraloto, Christopher -- Cerabolini, Bruno -- Pierce, Simon -- Shipley, Bill -- Kirkup, Donald -- Casanoves, Fernando -- Joswig, Julia S -- Gunther, Angela -- Falczuk, Valeria -- Ruger, Nadja -- Mahecha, Miguel D -- Gorne, Lucas D -- England -- Nature. 2016 Jan 14;529(7585):167-71. doi: 10.1038/nature16489. Epub 2015 Dec 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Instituto Multidisciplinario de Biologia Vegetal (IMBIV), CONICET and FCEFyN, Universidad Nacional de Cordoba, Casilla de Correo 495, 5000 Cordoba, Argentina. ; Max Planck Institute for Biogeochemistry, Hans-Knoll-Strasse 10, 07745 Jena, Germany. ; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany. ; Systems Ecology, Department of Ecological Science, Vrije Universiteit, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands. ; Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia. ; Laboratoire d'Ecologie Alpine, UMR 5553, CNRS - Universite Grenoble Alpes, 38041 Grenoble Cedex 9, France. ; Laboratoire de Biometrie et Biologie Evolutive, UMR5558, Universite Lyon 1, CNRS, F-69622 Villeurbanne, France. ; Institute of Biology, University of Leipzig, Johannisallee 21, 04103 Leipzig, Germany. ; Escuela de Biologia, Universidad Industrial de Santander, Cra. 27 Calle 9, 680002 Bucaramanga, Colombia. ; Landscape Ecology Group, Institute of Biology and Environmental Sciences, University of Oldenburg, D-26111 Oldenburg, Germany. ; Department of Systematic Botany and Functional Biodiversity, University of Leipzig, Johannisallee 21, 04103 Leipzig, Germany. ; AXA Chair in Biosphere and Climate Impacts, Grand Challenges in Ecosystems and the Environment and Grantham Institute - Climate Change and the Environment, Department of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot SL5 7PY, UK. ; Centre d'Ecologie Fonctionnelle et Evolutive (UMR 5175), CNRS-Universite de Montpellier - Universite Paul-Valery Montpellier - EPHE, 34293 Montpellier Cedex 5, France. ; Plant Sciences (IBG-2), Forschungszentrum Julich GmbH, D-52425 Julich, Germany. ; Department of Forest Resources, University of Minnesota, St Paul, Minnesota 55108, USA. ; Hawkesbury Institute for the Environment, University of Western Sydney, Penrith New South Wales 2751, Australia. ; Evolution &Ecology Research Centre, School of Biological, Earth and Environmental Sciences, UNSW Australia, Sydney, New South Wales 2052, Australia. ; Collections , The Royal Botanic Gardens Kew, Wakehurst Place, Ardingly, West Sussex, RH17 6TN, UK. ; Center for Biodiversity Management, P.O. Box 120, Yungaburra, Queensland 4884, Australia. ; Department of Biological Sciences, George Washington University, Washington DC 20052, USA. ; Center for Conservation and Sustainable Development, Missouri Botanical Garden, St Louis, Missouri 63121, USA. ; UMR 5174 Laboratoire Evolution et Diversite Biologique, CNRS &Universite Paul Sabatier, Toulouse 31062, France. ; Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama. ; Komarov Botanical Institute, Prof. Popov Street 2, St Petersburg 197376, Russia. ; INRA, UMR1202 BIOGECO, F-33610 Cestas, France. ; Universite de Bordeaux, BIOGECO, UMR 1202, F-33600 Pessac, France. ; International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, Florida 33199, USA. ; INRA, UMR Ecologie des Forets de Guyane, 97310 Kourou, French Guiana. ; Department of Theoretical and Applied Sciences, University of Insubria, Via J.H. Dunant 3, I-21100 Varese, Italy. ; Department of Agricultural and Environmental Sciences (DiSAA), University of Milan, Via G. Celoria 2, I-20133 Milan, Italy. ; Departement de biologie, Universite de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada. ; Biodiversity Informatics and Spatial Analysis, Jodrell Building, The Royal Botanic Gardens Kew, Richmond TW9 3AB, UK. ; Unidad de Bioestadistica, Centro Agronomico Tropical de Investigacion y Ensenanza (CATIE), 7170 Turrialba, 30501, Costa Rica.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26700811" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Databases, Factual ; Genetic Variation ; Internationality ; Models, Biological ; Nitrogen/analysis ; Organ Size ; *Phenotype ; Plant Development ; Plant Leaves/anatomy & histology ; *Plant Physiological Phenomena ; Plant Stems/anatomy & histology ; Plants/*anatomy & histology/classification ; Reproduction ; Seeds/anatomy & histology ; Selection, Genetic ; Species Specificity
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  • 80
    Publication Date: 2016-03-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Weiguo, Sang -- Axmacher, Jan C -- England -- Nature. 2016 Mar 17;531(7594):305. doi: 10.1038/531305b.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Minzu University of China; and Institute of Botany, Chinese Academy of Sciences, Beijing, China. ; University College London, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26983530" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/legislation & jurisprudence ; Biodiversity ; China ; Conservation of Natural Resources/*legislation & jurisprudence ; Ecology ; Environmental Policy/*legislation & jurisprudence ; Forests
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  • 81
    Publication Date: 2016-03-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lindenmayer, David -- England -- Nature. 2016 Mar 17;531(7594):305. doi: 10.1038/531305a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Australian National University, Canberra, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26983531" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Australia ; Biodiversity ; Conservation of Natural Resources ; Ecology/economics/*manpower ; Environmental Policy ; Extinction, Biological ; Unemployment/*statistics & numerical data
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 82
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    Nature Publishing Group (NPG)
    Publication Date: 2015-05-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2015 May 28;521(7553):393. doi: 10.1038/521393a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26017405" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Commerce/economics/*legislation & jurisprudence ; Drug Industry/economics/legislation & jurisprudence ; Environmental Policy/legislation & jurisprudence ; European Union/*economics ; Global Health/legislation & jurisprudence ; Humans ; International Cooperation/*legislation & jurisprudence ; Politics ; Public Policy/economics/*legislation & jurisprudence ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 83
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2015-11-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Obst, Carl -- England -- Nature. 2015 Nov 12;527(7577):165. doi: 10.1038/527165b.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Melbourne, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26560292" target="_blank"〉PubMed〈/a〉
    Keywords: Biodiversity ; Conservation of Natural Resources/*economics ; *Natural Resources ; *Soil ; United Nations
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 84
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    Nature Publishing Group (NPG)
    Publication Date: 2015-03-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zastrow, Mark -- England -- Nature. 2015 Mar 5;519(7541):119-20. doi: 10.1038/519119a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25739633" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Migration ; Animals ; Biodiversity ; Birds/physiology ; Databases, Factual ; Geographic Information Systems ; *Geography/methods ; *Maps as Topic ; Science/*methods ; *Software
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 85
    Publication Date: 2015-05-21
    Description: A major challenge in theoretical ecology is understanding how natural microbial communities support species diversity, and in particular how antibiotic-producing, -sensitive and -resistant species coexist. While cyclic 'rock-paper-scissors' interactions can stabilize communities in spatial environments, coexistence in unstructured environments remains unexplained. Here, using simulations and analytical models, we show that the opposing actions of antibiotic production and degradation enable coexistence even in well-mixed environments. Coexistence depends on three-way interactions in which an antibiotic-degrading species attenuates the inhibitory interactions between two other species. These interactions enable coexistence that is robust to substantial differences in inherent species growth rates and to invasion by 'cheating' species that cease to produce or degrade antibiotics. At least two antibiotics are required for stability, with greater numbers of antibiotics enabling more complex communities and diverse dynamic behaviours ranging from stable fixed points to limit cycles and chaos. Together, these results show how multi-species antibiotic interactions can generate ecological stability in both spatially structured and mixed microbial communities, suggesting strategies for engineering synthetic ecosystems and highlighting the importance of toxin production and degradation for microbial biodiversity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551410/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551410/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kelsic, Eric D -- Zhao, Jeffrey -- Vetsigian, Kalin -- Kishony, Roy -- R01 GM081617/GM/NIGMS NIH HHS/ -- R01GM081617/GM/NIGMS NIH HHS/ -- England -- Nature. 2015 May 28;521(7553):516-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25992546" target="_blank"〉PubMed〈/a〉
    Keywords: Anti-Bacterial Agents/*biosynthesis/*metabolism ; Biodiversity ; *Ecosystem ; *Models, Biological ; *Soil Microbiology
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 86
    Publication Date: 2015-12-18
    Description: The fossil record provides striking case studies of biodiversity loss and global ecosystem upheaval. Because of this, many studies have sought to assess the magnitude of the current biodiversity crisis relative to past crises-a task greatly complicated by the need to extrapolate extinction rates. Here we challenge this approach by showing that the rarity of previously abundant taxa may be more important than extinction in the cascade of events leading to global changes in the biosphere. Mass rarity may provide the most robust measure of our current biodiversity crisis relative to those past, and new insights into the dynamics of mass extinction.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hull, Pincelli M -- Darroch, Simon A F -- Erwin, Douglas H -- England -- Nature. 2015 Dec 17;528(7582):345-51. doi: 10.1038/nature16160.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Geology and Geophysics, Yale University, New Haven, Connecticut 06520-8109, USA. ; Department of Paleobiology, National Museum of Natural History, Washington, DC 20013-7012, USA. ; Department of Earth and Environmental Sciences, Vanderbilt University, Nashville, Tennessee 37235-1805, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26672552" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biodiversity ; Biological Evolution ; Classification ; Conservation of Natural Resources ; Ecology/methods ; *Ecosystem ; *Extinction, Biological ; Fossils ; Population Density
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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