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  • 1
    Publication Date: 2016-01-21
    Description: Viruses are obligatory intracellular parasites that suffer strong evolutionary pressure from the host immune system. Rapidly evolving viral genomes can adapt to this pressure by acquiring genes that counteract host defense mechanisms. For example, many vertebrate DNA viruses have hijacked cellular genes encoding cytokines or cytokine receptors to disrupt host...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2013-09-14
    Description: ABSTRACT We present an expanded training set of salt-marsh foraminifera for reconstructing Holocene relative sea-level change from 12 sites in New Jersey that represent varied physiographic environments. Seven groups of foraminifera are recognized, including four high- or transitional-marsh assemblages and a low-salinity assemblage. A weighted-averaging transfer function trained on this dataset was applied to a dated core from Barnegat Bay to reconstruct sea level with uncertainties of ± 14% of tidal range. We evaluate the transfer function using seven tests. (1) Leave-one-site-out cross validation suggests that training sets of salt-marsh foraminifera are robust to spatial autocorrelation caused by sampling along transects. (2) Segment-wise analysis shows that the transfer function performs best at densely sampled elevations and overall estimates of model performance are over optimistic. (3) Dissimilarity and (4) non-metric multi-dimensional scaling evaluated the analogy between modern and core samples. The closest modern analogues for core samples were drawn from six sites demonstrating the necessity of a multi-site training set. (5) Goodness-of-fit statistics assessed the validity of reconstructions. (6) The transfer function failed a test of significance because of the unusual properties of some cores selected for sea-level reconstruction. (7) Agreement between reconstructed sea level and tide-gauge measurements demonstrates the transfer function's utility. Copyright © 2013 John Wiley & Sons, Ltd.
    Print ISSN: 0267-8179
    Electronic ISSN: 1099-1417
    Topics: Geography , Geosciences
    Published by Wiley
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  • 3
    Publication Date: 2018
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 4
    Publication Date: 2016-06-26
    Description: In order to thrive in a time of rapid sea-level rise, tidal marshes will need to migrate upslope into adjacent uplands. Yet little is known about the mechanics of this process, especially in urbanized estuaries, where the adjacent upland is likely to be a mowed lawn rather than a wooded natural area. We studied marsh migration in a Long Island Sound salt marsh using detailed hydrologic, edaphic, and biotic sampling along marsh-to-upland transects in both wooded and lawn environments. We found that the overall pace of marsh development was largely unaffected by whether the upland being invaded was lawn or wooded, but the marsh-edge plant communities that developed in these two environments were quite different, and some indicators (soil salinity, foraminifera) appeared to migrate more easily into lawns. In addition, we found that different aspects of marsh structure and function migrated at different rates: wetland vegetation appeared to be a leading indicator of marsh migration, while soil characteristics such as redox potential and surface salinity developed later in the process. We defined a “hydrologic migration zone,” consisting of elevations that experience tidal inundation with frequencies ranging from 20% to 0.5% of high tides. This hydrologically defined zone – which extended to an elevation higher than the highest astronomical tide (HAT) datum – captured the biotic and edaphic marsh-upland ecotone. Tidal inundation at the upper border of this migration zone is highly variable over time and may be rising more rapidly than mean sea level. Our results indicate that land management practices at the upland periphery of tidal marshes can facilitate or impede ecosystem migration in response to rising sea level. These findings are applicable to large areas of tidal marsh along the U.S. Atlantic coast and in other urbanized coastal settings. This article is protected by copyright. All rights reserved.
    Print ISSN: 1354-1013
    Electronic ISSN: 1365-2486
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geography
    Published by Wiley
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  • 5
    Publication Date: 2011-06-29
    Description: Several fallacies commonly appear in articles or papers on drying. They fall into two main categories: inadequate or discredited theory which continues to be repeated, and theoretical models which are too complex for practical use, generate results in the wrong form, or do not take account of measurement limitations. Cases are highlighted where published theory is inadequate (e.g., Page's equation) and where simplified models can have better fitness for purpose than complex ones (e.g., in fluidized bed drying). The universal drying curve (UDC) is a useful concept for rapid evaluation of drying in deep well-mixed beds. Simplified drying models can be superior to complex models requiring extensive data. Effective models include the universal drying curve (UDC) as a useful concept for rapid evaluation of drying in fluidized beds and for other convective dryers, scale-up relationships, and energy analysis methods. Conversely, the widely used Page's equation for drying kinetics is an inaccurate oversimplification.
    Print ISSN: 0930-7516
    Electronic ISSN: 1521-4125
    Topics: Chemistry and Pharmacology , Process Engineering, Biotechnology, Nutrition Technology
    Published by Wiley
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  • 6
    Publication Date: 2012-04-15
    Description: We investigated use of δ 13 C in bulk organic sediment to define the botanical origin of samples preserved in coastal sediment as a means to reconstruct relative sea level in New Jersey, USA. Modern transects at three sites demonstrated that low and high salt-marsh floral zones dominated by C 4 species ( Spartina alterniflora and Spartina patens ) were associated with sediment δ 13 C values between −18.9‰ and −15.8‰ and occurred from mean tide level (MTL) to mean higher high water (MHHW). Brackish transitional settings vegetated by Phragmites australis with Iva fructescens and Typha sp. (C 3 species) and freshwater upland samples (C 3 species) were characterized by bulk sediment δ 13 C values of −27.0‰ to −22.0‰ and existed above MHHW. Parallel transects at one site suggested that intra-site variability was not discernible. The utility of δ 13 C values for reconstructing relative sea level in New Jersey is limited by an inability to differentiate between brackish sediments related to sea level and freshwater upland samples. To facilitate this distinction in a 4.4 m core, we used a multi-proxy approach (δ 13 C values with presence or absence of agglutinated foraminifera) to recognize indicative meanings for four sample types. Sediment with δ 13 C values greater than −18.9‰ was derived from a vegetated salt-marsh and formed between MTL and MHHW. Sediment with δ 13 C values less than −22.0‰ and containing agglutinated foraminifera formed in a brackish transitional zone between MHHW and highest astronomical tide (HAT). This is the narrowest elevational range of the four sample types and most precise sea-level indicator. Sediment with δ 13 C values less than −22.0‰ and lacking foraminifera can only constrain the upper bound of former sea level. Samples with intermediate values (−22.0‰ to −18.9‰) formed between MTL and HAT. Using these indicative meanings and radiocarbon dates, we suggest that a transition from brackish to salt-marsh δ 13 C values recorded in the core took approximately 350 years (from 1800 to 1450 cal. a BP). Copyright © 2011 John Wiley & Sons, Ltd.
    Print ISSN: 0267-8179
    Electronic ISSN: 1099-1417
    Topics: Geography , Geosciences
    Published by Wiley
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  • 7
    Publication Date: 2014-03-28
    Description: We report stratigraphic evidence of land-level change and tsunami inundation along the Alaska-Aleutian megathrust during prehistoric and historical earthquakes west of Kodiak Island. On Sitkinak Island, cores and tidal outcrops fringing a lagoon reveal five sharp lithologic contacts that record coseismic land-level change. Radiocarbon dates, 137 Cs profiles, computerized tomography scans, and microfossil assemblages are consistent with rapid uplift ca. 290-0, 520-300, and 1050-790 cal yr BP, and subsidence in AD 1964 and ca. 640-510 cal yr BP. Radiocarbon, 137 Cs, and 210 Pb ages bracketing a sand bed traced 1.5 km inland and evidence for sudden uplift are consistent with Russian accounts of an earthquake and tsunami in AD 1788. The mixed uplift and subsidence record suggests that Sitkinak Island sits above a non-persistent boundary near the southwestern limit of the AD 1964 Mw 9.2 megathrust rupture.
    Print ISSN: 0094-8276
    Electronic ISSN: 1944-8007
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 8
    Publication Date: 2011-12-29
    Description: We investigated use of δ 13 C in bulk organic sediment to define the botanical origin of samples preserved in coastal sediment as a means to reconstruct relative sea level in New Jersey, USA. Modern transects at three sites demonstrated that low and high salt-marsh floral zones dominated by C 4 species ( Spartina alterniflora and Spartina patens ) were associated with sediment δ 13 C values between −18.9‰ and −15.8‰ and occurred from mean tide level (MTL) to mean higher high water (MHHW). Brackish transitional settings vegetated by Phragmites australis with Iva fructescens and Typha sp. (C 3 species) and freshwater upland samples (C 3 species) were characterized by bulk sediment δ 13 C values of −27.0‰ to −22.0‰ and existed above MHHW. Parallel transects at one site suggested that intra-site variability was not discernible. The utility of δ 13 C values for reconstructing relative sea level in New Jersey is limited by an inability to differentiate between brackish sediments related to sea level and freshwater upland samples. To facilitate this distinction in a 4.4 m core, we used a multi-proxy approach (δ 13 C values with presence or absence of agglutinated foraminifera) to recognize indicative meanings for four sample types. Sediment with δ 13 C values greater than −18.9‰ was derived from a vegetated salt-marsh and formed between MTL and MHHW. Sediment with δ 13 C values less than −22.0‰ and containing agglutinated foraminifera formed in a brackish transitional zone between MHHW and highest astronomical tide (HAT). This is the narrowest elevational range of the four sample types and most precise sea-level indicator. Sediment with δ 13 C values less than −22.0‰ and lacking foraminifera can only constrain the upper bound of former sea level. Samples with intermediate values (−22.0‰ to −18.9‰) formed between MTL and HAT. Using these indicative meanings and radiocarbon dates, we suggest that a transition from brackish to salt-marsh δ 13 C values recorded in the core took approximately 350 years (from 1800 to 1450 cal. a BP). Copyright © 2011 John Wiley & Sons, Ltd.
    Print ISSN: 0267-8179
    Electronic ISSN: 1099-1417
    Topics: Geography , Geosciences
    Published by Wiley
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  • 9
    Publication Date: 2014-04-23
    Description: Granzymes are serine proteases released by cytotoxic lymphocytes to induce apoptosis in virus-infected cells and tumor cells. Evidence is emerging that granzymes also play a role in controlling inflammation. Granzyme serum levels are elevated in patients with autoimmune diseases and infections, including sepsis. However, the function of extracellular granzymes in...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2014-11-21
    Description: ABSTRACT We use relative sea-level (RSL) reconstructions and a spatiotemporal statistical model to estimate the rate of uplift of the Cape Fear Arch, a Mesozoic structural high, during the last ∼4000 years. We reconstructed RSL using 12 radiocarbon-dated samples of basal salt-marsh sediment preserved at Elizabeth Creek Marsh on the Cape Fear River. The new data show that RSL rose by ∼3 m during the past ∼4.6 ka at an average rate of 0.67 ± 0.12 mm a −1 . RSL reconstructions from other sites in southern North Carolina (which have rates of 0.91 ± 0.10 to 0.84 ± 0.24 mm a −1 ) probably show ( P  〉 0.9) higher rates of regional RSL rise for the same period, while sites from northern South Carolina (which have rates of 0.72 ± 0.17 to 0.80 ± 0.21 mm a −1 ) probably ( P  〉 0.67) show the same. We attribute the differences between Elizabeth Creek Marsh and neighboring regions to uplift of the Cape Fear Arch, which we estimate to be 0.24 ± 0.15 mm a −1 . Uplift of the arch may be responsible for lower rates of 20 th century RSL rise recorded by the Wilmington tide gauge relative to rates measured elsewhere along the US mid-Atlantic coast.
    Print ISSN: 0267-8179
    Electronic ISSN: 1099-1417
    Topics: Geography , Geosciences
    Published by Wiley
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