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  • Time Factors  (119)
  • *Ecosystem  (77)
  • Nature Publishing Group (NPG)  (149)
  • American Association for the Advancement of Science (AAAS)  (43)
  • American Institute of Physics (AIP)
  • Oxford University Press
  • 2010-2014  (192)
  • 1980-1984
  • 1925-1929
  • 2013  (192)
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  • Nature Publishing Group (NPG)  (149)
  • American Association for the Advancement of Science (AAAS)  (43)
  • American Institute of Physics (AIP)
  • Oxford University Press
Years
  • 2010-2014  (192)
  • 1980-1984
  • 1925-1929
Year
  • 1
    Publication Date: 2013-07-06
    Description: Transcription is reported to be spatially compartmentalized in nuclear transcription factories with clusters of RNA polymerase II (Pol II). However, little is known about when these foci assemble or their relative stability. We developed a quantitative single-cell approach to characterize protein spatiotemporal organization, with single-molecule sensitivity in live eukaryotic cells. We observed that Pol II clusters form transiently, with an average lifetime of 5.1 (+/- 0.4) seconds, which refutes the notion that they are statically assembled substructures. Stimuli affecting transcription yielded orders-of-magnitude changes in the dynamics of Pol II clusters, which implies that clustering is regulated and plays a role in the cell's ability to effect rapid response to external signals. Our results suggest that transient crowding of enzymes may aid in rate-limiting steps of gene regulation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cisse, Ibrahim I -- Izeddin, Ignacio -- Causse, Sebastien Z -- Boudarene, Lydia -- Senecal, Adrien -- Muresan, Leila -- Dugast-Darzacq, Claire -- Hajj, Bassam -- Dahan, Maxime -- Darzacq, Xavier -- New York, N.Y. -- Science. 2013 Aug 9;341(6146):664-7. doi: 10.1126/science.1239053. Epub 2013 Jul 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Functional Imaging of Transcription, CNRS UMR8197, Ecole Normale Superieure, Institut de Biologie de l'ENS, IBENS, Paris, 75005 France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23828889" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line, Tumor ; Flavonoids/pharmacology ; *Gene Expression Regulation ; Humans ; Piperidines/pharmacology ; RNA Polymerase II/*metabolism ; Single-Cell Analysis/methods ; Time Factors ; Transcription Elongation, Genetic/drug effects ; *Transcription, Genetic
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  • 2
    Publication Date: 2013-08-10
    Description: Numerous volatile organic compounds (VOCs) exist in Earth's atmosphere, most of which originate from biogenic emissions. Despite VOCs' critical role in tropospheric chemistry, studies for evaluating their atmosphere-ecosystem exchange (emission and deposition) have been limited to a few dominant compounds owing to a lack of appropriate measurement techniques. Using a high-mass resolution proton transfer reaction-time of flight-mass spectrometer and an absolute value eddy-covariance method, we directly measured 186 organic ions with net deposition, and 494 that have bidirectional flux. This observation of active atmosphere-ecosystem exchange of the vast majority of detected VOCs poses a challenge to current emission, air quality, and global climate models, which do not account for this extremely large range of compounds. This observation also provides new insight for understanding the atmospheric VOC budget.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, J-H -- Goldstein, A H -- Timkovsky, J -- Fares, S -- Weber, R -- Karlik, J -- Holzinger, R -- New York, N.Y. -- Science. 2013 Aug 9;341(6146):643-7. doi: 10.1126/science.1235053.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA 94720, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23929979" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/*chemistry ; *Ecosystem ; Mass Spectrometry ; Ozone/analysis/chemistry ; Plants/chemistry ; Volatile Organic Compounds/analysis/*chemistry
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  • 3
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-10-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Aspinall, Richard -- Gregory, Peter -- New York, N.Y. -- Science. 2013 Oct 25;342(6157):421. doi: 10.1126/science.342.6157.421-a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24159029" target="_blank"〉PubMed〈/a〉
    Keywords: *Agriculture ; Animals ; *Climate Change ; *Conservation of Natural Resources ; *Decision Support Techniques ; *Ecosystem ; *Models, Economic
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-07-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pedaste, Margus -- de Jong, Ton -- Sarapuu, Tago -- Piksoot, Jaanika -- van Joolingen, Wouter R -- Giemza, Adam -- New York, N.Y. -- Science. 2013 Jun 28;340(6140):1537-8. doi: 10.1126/science.1229908.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Tartu, 50103 Tartu, Estonia. margus.pedaste@ut.ee〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23812708" target="_blank"〉PubMed〈/a〉
    Keywords: Ecology/*education ; *Ecosystem ; Estonia ; Germany ; Netherlands ; Problem-Based Learning/*methods ; Research Design ; *Software
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2013-04-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Austin, A T -- Bustamante, M M C -- Nardoto, G B -- Mitre, S K -- Perez, T -- Ometto, J P H B -- Ascarrunz, N L -- Forti, M C -- Longo, K -- Gavito, M E -- Enrich-Prast, A -- Martinelli, L A -- New York, N.Y. -- Science. 2013 Apr 12;340(6129):149. doi: 10.1126/science.1231679.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Universidad de Buenos Aires, IFEVA-CONICET, Buenos Aires, Argentina.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23580515" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture ; Biomass ; *Conservation of Natural Resources ; *Ecosystem ; *Environment ; Human Activities ; Humans ; Latin America ; Nitrogen ; *Nitrogen Cycle ; Politics ; Public Health ; Public Policy
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2013-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shoemaker, J K -- Schrag, D P -- Molina, M J -- Ramanathan, V -- New York, N.Y. -- Science. 2013 Dec 13;342(6164):1323-4. doi: 10.1126/science.1240162.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24337280" target="_blank"〉PubMed〈/a〉
    Keywords: *Climate Change ; *Environmental Policy ; Environmental Pollutants/*standards ; Fluorocarbons/standards ; Methane/standards ; Ozone/standards ; Soot/standards ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2013-09-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pennisi, Elizabeth -- New York, N.Y. -- Science. 2013 Sep 6;341(6150):1055. doi: 10.1126/science.341.6150.1055.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24009370" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/*genetics/growth & development ; *Biological Evolution ; Breeding ; Congresses as Topic ; *Epigenesis, Genetic ; Flowers/*genetics ; *Gene Expression Regulation, Developmental ; *Gene Expression Regulation, Plant ; Portugal ; *Quantitative Trait, Heritable ; Time Factors
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  • 8
    Publication Date: 2013-08-03
    Description: The future impacts of anthropogenic global change on marine ecosystems are highly uncertain, but insights can be gained from past intervals of high atmospheric carbon dioxide partial pressure. The long-term geological record reveals an early Cenozoic warm climate that supported smaller polar ecosystems, few coral-algal reefs, expanded shallow-water platforms, longer food chains with less energy for top predators, and a less oxygenated ocean than today. The closest analogs for our likely future are climate transients, 10,000 to 200,000 years in duration, that occurred during the long early Cenozoic interval of elevated warmth. Although the future ocean will begin to resemble the past greenhouse world, it will retain elements of the present "icehouse" world long into the future. Changing temperatures and ocean acidification, together with rising sea level and shifts in ocean productivity, will keep marine ecosystems in a state of continuous change for 100,000 years.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Norris, R D -- Turner, S Kirtland -- Hull, P M -- Ridgwell, A -- New York, N.Y. -- Science. 2013 Aug 2;341(6145):492-8. doi: 10.1126/science.1240543.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093, USA. rnorris@ucsd.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23908226" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; *Climate Change/history ; *Ecosystem ; Greenhouse Effect ; History, Ancient ; *Oceans and Seas ; *Seawater ; Temperature ; Tidal Waves ; Vertebrates
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  • 9
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-09-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fung, Inez -- New York, N.Y. -- Science. 2013 Sep 6;341(6150):1075-6. doi: 10.1126/science.1242004.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of California, Berkeley, Berkeley, CA 94720-4767, USA. ifung@berkeley.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24009383" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/*chemistry ; *Carbon Cycle ; Carbon Dioxide/*chemistry ; *Ecosystem ; *Trees
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  • 10
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-10-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Obst, Carl -- Edens, Bram -- Hein, Lars -- New York, N.Y. -- Science. 2013 Oct 25;342(6157):420. doi: 10.1126/science.342.6157.420-a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Melbourne Sustainable Society Institute, University of Melbourne, Victoria, 3010 Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24159027" target="_blank"〉PubMed〈/a〉
    Keywords: *Agriculture ; Animals ; *Climate Change ; *Conservation of Natural Resources ; *Decision Support Techniques ; *Ecosystem ; *Models, Economic
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  • 11
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-01-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chown, S L -- New York, N.Y. -- Science. 2013 Jan 11;339(6116):141. doi: 10.1126/science.339.6116.141-a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23307721" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Conservation of Natural Resources ; *Ecosystem ; Humans
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  • 12
    Publication Date: 2013-01-19
    Description: A paper by Wearn et al. (Reports, 13 July 2012, p. 228) yields new insights on extinction debt. However, it leaves out the area dependence of the relaxation process. We show that this is not warranted on theoretical or observational grounds and that it may lead to erroneous conservation recommendations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Halley, John M -- Iwasa, Yoh -- Vokou, Despoina -- New York, N.Y. -- Science. 2013 Jan 18;339(6117):271. doi: 10.1126/science.1231438.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece. jhalley@cc.uoi.gr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23329033" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Conservation of Natural Resources ; *Ecosystem ; *Extinction, Biological ; *Trees ; *Vertebrates
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 13
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-12-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Belgrano, Andrea -- Fowler, Charles W -- New York, N.Y. -- Science. 2013 Dec 6;342(6163):1176-7. doi: 10.1126/science.1245490.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Swedish University of Agricultural Sciences, Department of Aquatic Resources, Institute of Marine Research, Turistgatan 5, SE-453 30 Lysekil, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24311669" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Body Size ; Conservation of Natural Resources ; *Ecosystem ; *Fisheries/methods ; Fishes/anatomy & histology/*genetics/growth & development ; Phenotype ; Population Dynamics
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  • 14
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-12-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stokstad, Erik -- New York, N.Y. -- Science. 2013 Dec 6;342(6163):1166-7. doi: 10.1126/science.342.6163.1166.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24311659" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Behavior, Animal ; *Colubridae/physiology ; *Ecosystem ; Female ; Guam ; *Introduced Species ; Male ; Mice ; Pest Control ; Population Density
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  • 15
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-02-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stokstad, Erik -- New York, N.Y. -- Science. 2013 Feb 8;339(6120):636-7. doi: 10.1126/science.339.6120.636.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23393236" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Ecosystem ; Extraction and Processing Industry/economics ; Gulf of Mexico ; Organizations, Nonprofit/economics ; Petroleum ; *Petroleum Pollution/adverse effects/analysis/economics ; Research ; *Research Support as Topic
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  • 16
    Publication Date: 2013-08-21
    Description: During the past 50 years, the human population has more than doubled and global agricultural production has similarly risen. However, the productive arable area has increased by just 10%; thus the increased use of pesticides has been a consequence of the demands of human population growth, and its impact has reached global significance. Although we often know a pesticide's mode of action in the target species, we still largely do not understand the full impact of unintended side effects on wildlife, particularly at higher levels of biological organization: populations, communities, and ecosystems. In these times of regional and global species declines, we are challenged with the task of causally linking knowledge about the molecular actions of pesticides to their possible interference with biological processes, in order to develop reliable predictions about the consequences of pesticide use, and misuse, in a rapidly changing world.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kohler, Heinz-R -- Triebskorn, Rita -- New York, N.Y. -- Science. 2013 Aug 16;341(6147):759-65. doi: 10.1126/science.1237591.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Animal Physiological Ecology, Institute of Evolution and Ecology, University of Tubingen, Tubingen, Germany. heinz-r.koehler@uni-tuebingen.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23950533" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture ; Animals ; *Animals, Wild ; Aquatic Organisms ; Biological Evolution ; *Ecosystem ; Ecotoxicology/methods/trends ; Food Chain ; Humans ; Pesticides/*toxicity ; Population Dynamics ; Research
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  • 17
    Publication Date: 2013-06-01
    Description: Perennial plants live for more than 1 year and flower only after an extended vegetative phase. We used Arabis alpina, a perennial relative of annual Arabidopsis thaliana, to study how increasing age and exposure to winter cold (vernalization) coordinate to establish competence to flower. We show that the APETALA2 transcription factor, a target of microRNA miR172, prevents flowering before vernalization. Additionally, miR156 levels decline as A. alpina ages, causing increased production of SPL (SQUAMOSA PROMOTER BINDING PROTEIN LIKE) transcription factors and ensuring that flowering occurs in response to cold. The age at which plants respond to vernalization can be altered by manipulating miR156 levels. Although miR156 and miR172 levels are uncoupled in A. alpina, miR156 abundance represents the timer controlling age-dependent flowering responses to cold.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bergonzi, Sara -- Albani, Maria C -- Ver Loren van Themaat, Emiel -- Nordstrom, Karl J V -- Wang, Renhou -- Schneeberger, Korbinian -- Moerland, Perry D -- Coupland, George -- New York, N.Y. -- Science. 2013 May 31;340(6136):1094-7. doi: 10.1126/science.1234116.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute for Plant Breeding Research, Cologne, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23723236" target="_blank"〉PubMed〈/a〉
    Keywords: Arabis/genetics/*physiology ; *Cold Temperature ; Flowers/genetics/*physiology ; Gene Expression Regulation, Plant ; MicroRNAs/metabolism ; Molecular Sequence Data ; Phylogeny ; Plant Proteins/genetics/metabolism ; *Seasons ; Time Factors ; Transcription Factors/classification/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 18
    Publication Date: 2013-02-09
    Description: Mass extinctions manifest in Earth's geologic record were turning points in biotic evolution. We present (40)Ar/(39)Ar data that establish synchrony between the Cretaceous-Paleogene boundary and associated mass extinctions with the Chicxulub bolide impact to within 32,000 years. Perturbation of the atmospheric carbon cycle at the boundary likely lasted less than 5000 years, exhibiting a recovery time scale two to three orders of magnitude shorter than that of the major ocean basins. Low-diversity mammalian fauna in the western Williston Basin persisted for as little as 20,000 years after the impact. The Chicxulub impact likely triggered a state shift of ecosystems already under near-critical stress.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Renne, Paul R -- Deino, Alan L -- Hilgen, Frederik J -- Kuiper, Klaudia F -- Mark, Darren F -- Mitchell, William S 3rd -- Morgan, Leah E -- Mundil, Roland -- Smit, Jan -- New York, N.Y. -- Science. 2013 Feb 8;339(6120):684-7. doi: 10.1126/science.1230492.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Berkeley Geochronology Center, 2455 Ridge Road, Berkeley, CA 94709, USA. prenne@bgc.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23393261" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Argon ; Chronology as Topic ; *Ecosystem ; *Extinction, Biological ; Geologic Sediments ; Mammals ; Mexico ; *Minor Planets ; Radioisotopes ; Radiometric Dating
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  • 19
    Publication Date: 2013-03-23
    Description: The end-Triassic extinction is characterized by major losses in both terrestrial and marine diversity, setting the stage for dinosaurs to dominate Earth for the next 136 million years. Despite the approximate coincidence between this extinction and flood basalt volcanism, existing geochronologic dates have insufficient resolution to confirm eruptive rates required to induce major climate perturbations. Here, we present new zircon uranium-lead (U-Pb) geochronologic constraints on the age and duration of flood basalt volcanism within the Central Atlantic Magmatic Province. This chronology demonstrates synchroneity between the earliest volcanism and extinction, tests and corroborates the existing astrochronologic time scale, and shows that the release of magma and associated atmospheric flux occurred in four pulses over about 600,000 years, indicating expansive volcanism even as the biologic recovery was under way.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Blackburn, Terrence J -- Olsen, Paul E -- Bowring, Samuel A -- McLean, Noah M -- Kent, Dennis V -- Puffer, John -- McHone, Greg -- Rasbury, E Troy -- Et-Touhami, Mohammed -- New York, N.Y. -- Science. 2013 May 24;340(6135):941-5. doi: 10.1126/science.1234204. Epub 2013 Mar 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. tblackburn@ciw.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23519213" target="_blank"〉PubMed〈/a〉
    Keywords: Atlantic Ocean ; *Climate Change ; *Earth (Planet) ; *Lead ; *Silicates ; Time Factors ; *Uranium ; *Volcanic Eruptions ; *Zirconium
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 20
    Publication Date: 2013-09-13
    Description: Established infections with the human and simian immunodeficiency viruses (HIV and SIV, respectively) are thought to be permanent with even the most effective immune responses and antiretroviral therapies only able to control, but not clear, these infections. Whether the residual virus that maintains these infections is vulnerable to clearance is a question of central importance to the future management of millions of HIV-infected individuals. We recently reported that approximately 50% of rhesus macaques (RM; Macaca mulatta) vaccinated with SIV protein-expressing rhesus cytomegalovirus (RhCMV/SIV) vectors manifest durable, aviraemic control of infection with the highly pathogenic strain SIVmac239 (ref. 5). Here we show that regardless of the route of challenge, RhCMV/SIV vector-elicited immune responses control SIVmac239 after demonstrable lymphatic and haematogenous viral dissemination, and that replication-competent SIV persists in several sites for weeks to months. Over time, however, protected RM lost signs of SIV infection, showing a consistent lack of measurable plasma- or tissue-associated virus using ultrasensitive assays, and a loss of T-cell reactivity to SIV determinants not in the vaccine. Extensive ultrasensitive quantitative PCR and quantitative PCR with reverse transcription analyses of tissues from RhCMV/SIV vector-protected RM necropsied 69-172 weeks after challenge did not detect SIV RNA or DNA sequences above background levels, and replication-competent SIV was not detected in these RM by extensive co-culture analysis of tissues or by adoptive transfer of 60 million haematolymphoid cells to naive RM. These data provide compelling evidence for progressive clearance of a pathogenic lentiviral infection, and suggest that some lentiviral reservoirs may be susceptible to the continuous effector memory T-cell-mediated immune surveillance elicited and maintained by cytomegalovirus vectors.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849456/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849456/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hansen, Scott G -- Piatak, Michael Jr -- Ventura, Abigail B -- Hughes, Colette M -- Gilbride, Roxanne M -- Ford, Julia C -- Oswald, Kelli -- Shoemaker, Rebecca -- Li, Yuan -- Lewis, Matthew S -- Gilliam, Awbrey N -- Xu, Guangwu -- Whizin, Nathan -- Burwitz, Benjamin J -- Planer, Shannon L -- Turner, John M -- Legasse, Alfred W -- Axthelm, Michael K -- Nelson, Jay A -- Fruh, Klaus -- Sacha, Jonah B -- Estes, Jacob D -- Keele, Brandon F -- Edlefsen, Paul T -- Lifson, Jeffrey D -- Picker, Louis J -- HHSN261200800001E/PHS HHS/ -- P01 AI094417/AI/NIAID NIH HHS/ -- P51OD011092/OD/NIH HHS/ -- R01 AI060392/AI/NIAID NIH HHS/ -- R01 DE021291/DE/NIDCR NIH HHS/ -- R37 AI054292/AI/NIAID NIH HHS/ -- U19 AI095985/AI/NIAID NIH HHS/ -- U19 AI096109/AI/NIAID NIH HHS/ -- U24 OD010850/OD/NIH HHS/ -- U42 OD010426/OD/NIH HHS/ -- England -- Nature. 2013 Oct 3;502(7469):100-4. doi: 10.1038/nature12519. Epub 2013 Sep 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Vaccine and Gene Therapy Institute and Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, Oregon 97006, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24025770" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cytomegalovirus/genetics/immunology ; Female ; Macaca mulatta ; Male ; Molecular Sequence Data ; SAIDS Vaccines/*immunology ; Simian Acquired Immunodeficiency Syndrome/*prevention & control/virology ; Simian Immunodeficiency Virus/*immunology ; Time Factors ; Vaccines, Attenuated/immunology ; Viral Load ; Virus Replication/physiology
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  • 21
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    Nature Publishing Group (NPG)
    Publication Date: 2013-05-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Monastersky, Richard -- England -- Nature. 2013 May 30;497(7451):545-6. doi: 10.1038/497545a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23719440" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Animals ; Birds/physiology ; Entomology ; Female ; Hemiptera/classification/genetics/growth & development/*physiology ; Larva/genetics/growth & development/physiology ; Life Cycle Stages/*physiology ; Male ; *Periodicity ; Plant Roots/metabolism ; Population Dynamics ; Predatory Behavior/physiology ; Research Personnel ; Sexual Behavior, Animal/physiology ; Survival Rate ; Time Factors ; United States ; Vocalization, Animal/physiology
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  • 22
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    Nature Publishing Group (NPG)
    Publication Date: 2013-02-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 Feb 21;494(7437):282. doi: 10.1038/494282a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426286" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/*methods ; Ecology/methods ; *Ecosystem ; Fisheries/economics/methods/standards/*statistics & numerical data ; Fishes/growth & development/*physiology ; Marine Biology/methods ; Oceans and Seas ; Population Dynamics ; Uncertainty
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  • 23
    Publication Date: 2013-07-05
    Description: Climate targets are designed to inform policies that would limit the magnitude and impacts of climate change caused by anthropogenic emissions of greenhouse gases and other substances. The target that is currently recognized by most world governments places a limit of two degrees Celsius on the global mean warming since preindustrial times. This would require large sustained reductions in carbon dioxide emissions during the twenty-first century and beyond. Such a global temperature target, however, is not sufficient to control many other quantities, such as transient sea level rise, ocean acidification and net primary production on land. Here, using an Earth system model of intermediate complexity (EMIC) in an observation-informed Bayesian approach, we show that allowable carbon emissions are substantially reduced when multiple climate targets are set. We take into account uncertainties in physical and carbon cycle model parameters, radiative efficiencies, climate sensitivity and carbon cycle feedbacks along with a large set of observational constraints. Within this framework, we explore a broad range of economically feasible greenhouse gas scenarios from the integrated assessment community to determine the likelihood of meeting a combination of specific global and regional targets under various assumptions. For any given likelihood of meeting a set of such targets, the allowable cumulative emissions are greatly reduced from those inferred from the temperature target alone. Therefore, temperature targets alone are unable to comprehensively limit the risks from anthropogenic emissions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Steinacher, Marco -- Joos, Fortunat -- Stocker, Thomas F -- England -- Nature. 2013 Jul 11;499(7457):197-201. doi: 10.1038/nature12269. Epub 2013 Jul 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Climate and Environmental Physics, University of Bern, 3012 Bern, Switzerland. steinacher@climate.unibe.ch〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23823728" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Bayes Theorem ; Carbon Cycle ; Carbon Dioxide/*analysis ; Climate ; Climate Change/*statistics & numerical data ; Feedback ; Forecasting ; Fossil Fuels ; Greenhouse Effect/statistics & numerical data ; *Models, Theoretical ; Temperature ; Time Factors ; Uncertainty
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 24
    Publication Date: 2013-05-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Buzsaki, Gyorgy -- England -- Nature. 2013 May 30;497(7451):568-9. doi: 10.1038/497568a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23719456" target="_blank"〉PubMed〈/a〉
    Keywords: Cognition/*physiology ; Hippocampus/*cytology/*physiology ; Humans ; *Memory, Episodic ; Space Perception/*physiology ; *Time ; Time Factors
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  • 25
    Publication Date: 2013-06-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dupont, Sam -- Portner, Hans -- England -- Nature. 2013 Jun 27;498(7455):429. doi: 10.1038/498429a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Gothenburg, Kristineberg, Sweden. sam.dupont@bioenv.gu.se〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23803827" target="_blank"〉PubMed〈/a〉
    Keywords: Acclimatization/*drug effects ; Animals ; Carbon Dioxide/*adverse effects ; Climate Change/statistics & numerical data ; *Ecosystem ; Hydrogen-Ion Concentration/drug effects ; Marine Biology ; Oceans and Seas ; Seawater/*chemistry
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  • 26
    Publication Date: 2013-05-17
    Description: High latitudes contain nearly half of global soil carbon, prompting interest in understanding how the Arctic terrestrial carbon balance will respond to rising temperatures. Low temperatures suppress the activity of soil biota, retarding decomposition and nitrogen release, which limits plant and microbial growth. Warming initially accelerates decomposition, increasing nitrogen availability, productivity and woody-plant dominance. However, these responses may be transitory, because coupled abiotic-biotic feedback loops that alter soil-temperature dynamics and change the structure and activity of soil communities, can develop. Here we report the results of a two-decade summer warming experiment in an Alaskan tundra ecosystem. Warming increased plant biomass and woody dominance, indirectly increased winter soil temperature, homogenized the soil trophic structure across horizons and suppressed surface-soil-decomposer activity, but did not change total soil carbon or nitrogen stocks, thereby increasing net ecosystem carbon storage. Notably, the strongest effects were in the mineral horizon, where warming increased decomposer activity and carbon stock: a 'biotic awakening' at depth.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sistla, Seeta A -- Moore, John C -- Simpson, Rodney T -- Gough, Laura -- Shaver, Gaius R -- Schimel, Joshua P -- England -- Nature. 2013 May 30;497(7451):615-8. doi: 10.1038/nature12129. Epub 2013 May 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa Barbara, California 93108, USA. sistla@lifesci.ucsb.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23676669" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arctic Regions ; Biomass ; Carbon/*analysis ; *Carbon Cycle ; *Cold Climate ; Discriminant Analysis ; *Ecosystem ; Food Chain ; Global Warming/*statistics & numerical data ; History, 20th Century ; History, 21st Century ; Nitrogen/metabolism ; Photosynthesis ; Plants/metabolism ; Rain ; Soil/analysis/*chemistry/parasitology ; Soil Microbiology ; *Temperature ; Time Factors ; Uncertainty
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  • 27
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    Nature Publishing Group (NPG)
    Publication Date: 2013-09-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Abbott, Alison -- England -- Nature. 2013 Sep 5;501(7465):18. doi: 10.1038/501018a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24005397" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Aged ; Aging/physiology ; Biomedical Enhancement/*methods ; Computers ; Female ; Humans ; Middle Aged ; Mild Cognitive Impairment/*prevention & control ; Neuronal Plasticity/physiology ; Neuropsychological Tests ; Psychomotor Performance ; *Task Performance and Analysis ; Time Factors ; *Video Games
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  • 28
    Publication Date: 2013-08-21
    Description: The terrestrial biosphere is a key component of the global carbon cycle and its carbon balance is strongly influenced by climate. Continuing environmental changes are thought to increase global terrestrial carbon uptake. But evidence is mounting that climate extremes such as droughts or storms can lead to a decrease in regional ecosystem carbon stocks and therefore have the potential to negate an expected increase in terrestrial carbon uptake. Here we explore the mechanisms and impacts of climate extremes on the terrestrial carbon cycle, and propose a pathway to improve our understanding of present and future impacts of climate extremes on the terrestrial carbon budget.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reichstein, Markus -- Bahn, Michael -- Ciais, Philippe -- Frank, Dorothea -- Mahecha, Miguel D -- Seneviratne, Sonia I -- Zscheischler, Jakob -- Beer, Christian -- Buchmann, Nina -- Frank, David C -- Papale, Dario -- Rammig, Anja -- Smith, Pete -- Thonicke, Kirsten -- van der Velde, Marijn -- Vicca, Sara -- Walz, Ariane -- Wattenbach, Martin -- England -- Nature. 2013 Aug 15;500(7462):287-95. doi: 10.1038/nature12350.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute for Biogeochemistry, 07745 Jena, Germany. markus.reichstein@bgc-jena.mpg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23955228" target="_blank"〉PubMed〈/a〉
    Keywords: *Carbon Cycle ; *Climate Change ; *Ecosystem ; Plants/metabolism ; Temperature
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  • 29
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 Jan 17;493(7432):272.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23330183" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Wild/*genetics/*physiology ; Behavior, Animal/*physiology ; *Biological Evolution ; *Ecosystem ; Female ; Male ; Multigene Family/*genetics ; Peromyscus/*genetics/*physiology ; Quantitative Trait Loci/*genetics
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  • 30
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    Nature Publishing Group (NPG)
    Publication Date: 2013-05-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2013 May 30;497(7451):546-7. doi: 10.1038/497546a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23719441" target="_blank"〉PubMed〈/a〉
    Keywords: Aged, 80 and over ; *Awards and Prizes ; Exome/genetics ; Female ; Genomics/*economics/*methods/trends ; Goals ; Humans ; Inventions/*economics ; Male ; Marketing ; Public Opinion ; Quality Control ; Sequence Analysis, DNA/*economics/*methods/trends ; Time Factors
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  • 31
    Publication Date: 2013-07-23
    Description: The dynamics of adaptation determine which mutations fix in a population, and hence how reproducible evolution will be. This is central to understanding the spectra of mutations recovered in the evolution of antibiotic resistance, the response of pathogens to immune selection, and the dynamics of cancer progression. In laboratory evolution experiments, demonstrably beneficial mutations are found repeatedly, but are often accompanied by other mutations with no obvious benefit. Here we use whole-genome whole-population sequencing to examine the dynamics of genome sequence evolution at high temporal resolution in 40 replicate Saccharomyces cerevisiae populations growing in rich medium for 1,000 generations. We find pervasive genetic hitchhiking: multiple mutations arise and move synchronously through the population as mutational 'cohorts'. Multiple clonal cohorts are often present simultaneously, competing with each other in the same population. Our results show that patterns of sequence evolution are driven by a balance between these chance effects of hitchhiking and interference, which increase stochastic variation in evolutionary outcomes, and the deterministic action of selection on individual mutations, which favours parallel evolutionary solutions in replicate populations.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758440/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758440/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lang, Gregory I -- Rice, Daniel P -- Hickman, Mark J -- Sodergren, Erica -- Weinstock, George M -- Botstein, David -- Desai, Michael M -- GM046406/GM/NIGMS NIH HHS/ -- GM071508/GM/NIGMS NIH HHS/ -- P50 GM071508/GM/NIGMS NIH HHS/ -- R01 GM046406/GM/NIGMS NIH HHS/ -- R37 GM046406/GM/NIGMS NIH HHS/ -- England -- Nature. 2013 Aug 29;500(7464):571-4. doi: 10.1038/nature12344. Epub 2013 Jul 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Lewis-Sigler Institute for Integrative Genomics and Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA. glang@lehigh.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23873039" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological/genetics ; Cell Nucleus/genetics ; Clone Cells/*cytology/metabolism ; *Evolution, Molecular ; Genes, Fungal/genetics ; Mutation/genetics ; Saccharomyces cerevisiae/classification/cytology/*genetics/*growth & development ; Stochastic Processes ; Time Factors
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  • 32
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    Nature Publishing Group (NPG)
    Publication Date: 2013-05-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2013 May 2;497(7447):17-8. doi: 10.1038/497017a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23636372" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Genetically Modified/genetics ; China ; Fisheries/economics ; Food Industry/economics/trends ; Food, Genetically Modified/economics/*standards/*supply & distribution ; Growth Hormone/genetics/metabolism ; Salmon/*genetics ; Time Factors ; United States ; United States Food and Drug Administration/*legislation & jurisprudence
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  • 33
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2013 Jan 24;493(7433):460. doi: 10.1038/493460a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23344335" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Directed Molecular Evolution ; Ferrets/virology ; Guidelines as Topic ; Humans ; Influenza A Virus, H5N1 Subtype/classification/genetics/*pathogenicity ; Influenza, Human/transmission/*virology ; International Cooperation ; Policy Making ; Risk Assessment/*methods/trends ; Security Measures/*trends ; Time Factors ; World Health Organization
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  • 34
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    Nature Publishing Group (NPG)
    Publication Date: 2013-02-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rosner, Hillary -- England -- Nature. 2013 Feb 7;494(7435):22-3. doi: 10.1038/494022a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23389525" target="_blank"〉PubMed〈/a〉
    Keywords: Acclimatization/*physiology ; Animals ; Biodiversity ; Biological Evolution ; Cold Temperature ; Colorado ; Costa Rica ; *Ecosystem ; Ecuador ; *Global Warming ; Hot Temperature ; Insects/physiology ; Lizards/physiology ; *Models, Biological ; Rivers ; Survival Analysis ; Tropical Climate
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  • 35
    Publication Date: 2013-02-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Swing, Kelly -- England -- Nature. 2013 Feb 21;494(7437):314. doi: 10.1038/494314b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426316" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/economics/*statistics & numerical data ; Endangered Species/economics/statistics & numerical data ; Fishes/*physiology ; Food Supply/*economics/*statistics & numerical data ; Population Density ; Time Factors ; Tuna/physiology
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  • 36
    Publication Date: 2013-02-22
    Description: China is experiencing intense air pollution caused in large part by anthropogenic emissions of reactive nitrogen. These emissions result in the deposition of atmospheric nitrogen (N) in terrestrial and aquatic ecosystems, with implications for human and ecosystem health, greenhouse gas balances and biological diversity. However, information on the magnitude and environmental impact of N deposition in China is limited. Here we use nationwide data sets on bulk N deposition, plant foliar N and crop N uptake (from long-term unfertilized soils) to evaluate N deposition dynamics and their effect on ecosystems across China between 1980 and 2010. We find that the average annual bulk deposition of N increased by approximately 8 kilograms of nitrogen per hectare (P 〈 0.001) between the 1980s (13.2 kilograms of nitrogen per hectare) and the 2000s (21.1 kilograms of nitrogen per hectare). Nitrogen deposition rates in the industrialized and agriculturally intensified regions of China are as high as the peak levels of deposition in northwestern Europe in the 1980s, before the introduction of mitigation measures. Nitrogen from ammonium (NH4(+)) is the dominant form of N in bulk deposition, but the rate of increase is largest for deposition of N from nitrate (NO3(-)), in agreement with decreased ratios of NH3 to NOx emissions since 1980. We also find that the impact of N deposition on Chinese ecosystems includes significantly increased plant foliar N concentrations in natural and semi-natural (that is, non-agricultural) ecosystems and increased crop N uptake from long-term-unfertilized croplands. China and other economies are facing a continuing challenge to reduce emissions of reactive nitrogen, N deposition and their negative effects on human health and the environment.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Xuejun -- Zhang, Ying -- Han, Wenxuan -- Tang, Aohan -- Shen, Jianlin -- Cui, Zhenling -- Vitousek, Peter -- Erisman, Jan Willem -- Goulding, Keith -- Christie, Peter -- Fangmeier, Andreas -- Zhang, Fusuo -- England -- Nature. 2013 Feb 28;494(7438):459-62. doi: 10.1038/nature11917. Epub 2013 Feb 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉College of Resources & Environmental Sciences, China Agricultural University, Beijing 100193, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426264" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollutants/*analysis/metabolism/supply & distribution ; Air Pollution/*analysis/statistics & numerical data ; Animals ; China ; *Ecosystem ; Environmental Monitoring/*statistics & numerical data ; Greenhouse Effect ; Human Activities ; Humans ; Nitrates/analysis/metabolism ; Nitrogen/*analysis/metabolism ; Plants/chemistry/metabolism ; Quaternary Ammonium Compounds/analysis/metabolism
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  • 37
    Publication Date: 2013-04-05
    Description: The technological demand to push the gigahertz (10(9) hertz) switching speed limit of today's magnetic memory and logic devices into the terahertz (10(12) hertz) regime underlies the entire field of spin-electronics and integrated multi-functional devices. This challenge is met by all-optical magnetic switching based on coherent spin manipulation. By analogy to femtosecond chemistry and photosynthetic dynamics--in which photoproducts of chemical and biochemical reactions can be influenced by creating suitable superpositions of molecular states--femtosecond-laser-excited coherence between electronic states can switch magnetic order by 'suddenly' breaking the delicate balance between competing phases of correlated materials: for example, manganites exhibiting colossal magneto-resistance suitable for applications. Here we show femtosecond (10(-15) seconds) photo-induced switching from antiferromagnetic to ferromagnetic ordering in Pr0.7Ca0.3MnO3, by observing the establishment (within about 120 femtoseconds) of a huge temperature-dependent magnetization with photo-excitation threshold behaviour absent in the optical reflectivity. The development of ferromagnetic correlations during the femtosecond laser pulse reveals an initial quantum coherent regime of magnetism, distinguished from the picosecond (10(-12) seconds) lattice-heating regime characterized by phase separation without threshold behaviour. Our simulations reproduce the nonlinear femtosecond spin generation and underpin fast quantum spin-flip fluctuations correlated with coherent superpositions of electronic states to initiate local ferromagnetic correlations. These results merge two fields, femtosecond magnetism in metals and band insulators, and non-equilibrium phase transitions of strongly correlated electrons, in which local interactions exceeding the kinetic energy produce a complex balance of competing orders.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Tianqi -- Patz, Aaron -- Mouchliadis, Leonidas -- Yan, Jiaqiang -- Lograsso, Thomas A -- Perakis, Ilias E -- Wang, Jigang -- England -- Nature. 2013 Apr 4;496(7443):69-73. doi: 10.1038/nature11934.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23552945" target="_blank"〉PubMed〈/a〉
    Keywords: Biology ; Chemistry ; Circular Dichroism ; Electronics ; Iron/chemistry ; *Magnetic Phenomena ; Magnetics ; Optics and Photonics ; Photosynthesis ; *Quantum Theory ; Temperature ; Time Factors
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  • 38
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    Nature Publishing Group (NPG)
    Publication Date: 2013-06-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Carmichael, Mary -- England -- Nature. 2013 Jun 27;498(7455):S14-5. doi: 10.1038/498S14a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23803944" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Antineoplastic Agents/*adverse effects/therapeutic use ; Bone Marrow Transplantation/adverse effects ; Child ; Doxorubicin/adverse effects/therapeutic use ; Drug-Related Side Effects and Adverse ; Reactions/*complications/genetics/prevention & control ; Female ; Humans ; Leukemia/*complications/*drug therapy/genetics ; Metabolic Syndrome X/complications/etiology/genetics ; Patient Safety/*statistics & numerical data ; Precursor Cell Lymphoblastic Leukemia-Lymphoma/complications/drug ; therapy/genetics ; Survivors/*statistics & numerical data ; Time Factors
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  • 39
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    Nature Publishing Group (NPG)
    Publication Date: 2013-12-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Sarah -- England -- Nature. 2013 Dec 5;504(7478):19-20. doi: 10.1038/504019a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24305132" target="_blank"〉PubMed〈/a〉
    Keywords: Anti-Bacterial Agents/*pharmacology ; Bacteria/*drug effects ; Bacterial Infections/diagnosis/*microbiology ; *Drug Resistance, Bacterial ; Enterobacteriaceae/drug effects ; Humans ; Microbial Sensitivity Tests/instrumentation/standards ; Time Factors ; United States ; United States Food and Drug Administration
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  • 40
    Publication Date: 2013-03-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hobday, Alistair J -- Bustamante, Rodrigo H -- Plaganyi, Eva E -- England -- Nature. 2013 Mar 21;495(7441):314. doi: 10.1038/495314b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23518552" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/*methods/*statistics & numerical data ; Ecology/*methods ; *Ecosystem ; Fisheries/*statistics & numerical data ; Fishes/*physiology
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  • 41
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    Nature Publishing Group (NPG)
    Publication Date: 2013-11-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Sarah -- England -- Nature. 2013 Nov 21;503(7476):324. doi: 10.1038/503324a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24256787" target="_blank"〉PubMed〈/a〉
    Keywords: Cyclonic Storms/mortality/*statistics & numerical data ; Disasters/*prevention & control/*statistics & numerical data ; Financing, Organized ; Geologic Sediments/analysis/chemistry ; Humans ; Interviews as Topic ; Philippines ; Research/economics/*trends ; Risk Assessment ; Time Factors ; Water Movements
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  • 42
    Publication Date: 2013-08-06
    Description: Predictions about future rewarding events have a powerful influence on behaviour. The phasic spike activity of dopamine-containing neurons, and corresponding dopamine transients in the striatum, are thought to underlie these predictions, encoding positive and negative reward prediction errors. However, many behaviours are directed towards distant goals, for which transient signals may fail to provide sustained drive. Here we report an extended mode of reward-predictive dopamine signalling in the striatum that emerged as rats moved towards distant goals. These dopamine signals, which were detected with fast-scan cyclic voltammetry (FSCV), gradually increased or--in rare instances--decreased as the animals navigated mazes to reach remote rewards, rather than having phasic or steady tonic profiles. These dopamine increases (ramps) scaled flexibly with both the distance and size of the rewards. During learning, these dopamine signals showed spatial preferences for goals in different locations and readily changed in magnitude to reflect changing values of the distant rewards. Such prolonged dopamine signalling could provide sustained motivational drive, a control mechanism that may be important for normal behaviour and that can be impaired in a range of neurologic and neuropsychiatric disorders.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927840/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927840/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Howe, Mark W -- Tierney, Patrick L -- Sandberg, Stefan G -- Phillips, Paul E M -- Graybiel, Ann M -- R01 AG044839/AG/NIA NIH HHS/ -- R01 DA027858/DA/NIDA NIH HHS/ -- R01 MH060379/MH/NIMH NIH HHS/ -- R01 MH079292/MH/NIMH NIH HHS/ -- England -- Nature. 2013 Aug 29;500(7464):575-9. doi: 10.1038/nature12475. Epub 2013 Aug 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉McGovern Institute for Brain Research and Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23913271" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Dopamine/*metabolism ; Dopaminergic Neurons/metabolism ; Goals ; Male ; Maze Learning ; Models, Neurological ; Models, Psychological ; Motivation ; Neostriatum/cytology/*metabolism ; Rats ; Rats, Long-Evans ; *Reward ; *Signal Transduction ; Time Factors
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  • 43
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    Nature Publishing Group (NPG)
    Publication Date: 2013-05-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Owens, Brian -- England -- Nature. 2013 May 23;497(7450):S8-9. doi: 10.1038/497S8a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23698508" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Mass Index ; CLOCK Proteins/genetics/metabolism ; Circadian Rhythm/physiology ; Energy Metabolism/*physiology ; Ghrelin/metabolism ; Humans ; Insulin Resistance/physiology ; Leptin/metabolism ; Male ; Mice ; Obesity/*physiopathology ; Satiety Response/physiology ; Sleep/*physiology ; Suprachiasmatic Nucleus/physiology ; Time Factors ; Weight Gain/physiology ; Weight Loss/physiology
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  • 44
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    Nature Publishing Group (NPG)
    Publication Date: 2013-02-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2013 Feb 21;494(7437):294. doi: 10.1038/494294a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426303" target="_blank"〉PubMed〈/a〉
    Keywords: Aluminum Silicates/*chemistry ; Carbon Dioxide/analysis ; China ; Environment ; Global Warming/prevention & control ; Methane/analysis ; Natural Gas/economics/*supply & distribution/*utilization ; *Oil and Gas Fields ; Time Factors
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  • 45
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    Nature Publishing Group (NPG)
    Publication Date: 2013-03-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacKenzie, Brian R -- Payne, Mark R -- England -- Nature. 2013 Mar 21;495(7441):314. doi: 10.1038/495314c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23518555" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/*methods/*statistics & numerical data ; Ecology/*methods ; *Ecosystem ; Fisheries/*statistics & numerical data ; Fishes/*physiology
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  • 46
    Publication Date: 2013-08-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉James, Alex -- Pitchford, Jonathan W -- Plank, Michael J -- England -- Nature. 2013 Aug 22;500(7463):E2-3. doi: 10.1038/nature12381.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Biomathematics Research Centre, University of Canterbury, Private Bag 4800, Christchurch 8040, New Zealand. alex.james@canterbury.ac.nz〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23969465" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Ecosystem ; *Models, Theoretical
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  • 47
    Publication Date: 2013-06-21
    Description: Human outer subventricular zone (OSVZ) neural progenitors and Drosophila type II neuroblasts both generate intermediate neural progenitors (INPs) that populate the adult cerebral cortex or central complex, respectively. It is unknown whether INPs simply expand or also diversify neural cell types. Here we show that Drosophila INPs sequentially generate distinct neural subtypes, that INPs sequentially express Dichaete, Grainy head and Eyeless transcription factors, and that these transcription factors are required for the production of distinct neural subtypes. Moreover, parental type II neuroblasts also sequentially express transcription factors and generate different neuronal/glial progeny over time, providing a second temporal identity axis. We conclude that neuroblast and INP temporal patterning axes act together to generate increased neural diversity within the adult central complex; OSVZ progenitors may use similar mechanisms to increase neural diversity in the human brain.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3941985/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3941985/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bayraktar, Omer Ali -- Doe, Chris Q -- R01 HD027056/HD/NICHD NIH HHS/ -- R01HD27056/HD/NICHD NIH HHS/ -- R37 HD027056/HD/NICHD NIH HHS/ -- T32GM007413/GM/NIGMS NIH HHS/ -- T32HD216345/HD/NICHD NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2013 Jun 27;498(7455):449-55. doi: 10.1038/nature12266. Epub 2013 Jun 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, University of Oregon, Eugene, Oregon 97403, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23783519" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomarkers/metabolism ; Brain/anatomy & histology/cytology/physiology ; *Cell Lineage ; DNA-Binding Proteins/metabolism ; Drosophila Proteins/metabolism ; Drosophila melanogaster/anatomy & histology/*cytology/metabolism/physiology ; Female ; Gene Expression Regulation ; Neural Stem Cells/*cytology/metabolism ; Neuroglia/cytology/metabolism ; Neurons/*cytology/*metabolism ; Time Factors ; Transcription Factors/metabolism
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  • 48
    Publication Date: 2013-05-31
    Description: Human language, as well as birdsong, relies on the ability to arrange vocal elements in new sequences. However, little is known about the ontogenetic origin of this capacity. Here we track the development of vocal combinatorial capacity in three species of vocal learners, combining an experimental approach in zebra finches (Taeniopygia guttata) with an analysis of natural development of vocal transitions in Bengalese finches (Lonchura striata domestica) and pre-lingual human infants. We find a common, stepwise pattern of acquiring vocal transitions across species. In our first study, juvenile zebra finches were trained to perform one song and then the training target was altered, prompting the birds to swap syllable order, or insert a new syllable into a string. All birds solved these permutation tasks in a series of steps, gradually approximating the target sequence by acquiring new pairwise syllable transitions, sometimes too slowly to accomplish the task fully. Similarly, in the more complex songs of Bengalese finches, branching points and bidirectional transitions in song syntax were acquired in a stepwise fashion, starting from a more restrictive set of vocal transitions. The babbling of pre-lingual human infants showed a similar pattern: instead of a single developmental shift from reduplicated to variegated babbling (that is, from repetitive to diverse sequences), we observed multiple shifts, where each new syllable type slowly acquired a diversity of pairwise transitions, asynchronously over development. Collectively, these results point to a common generative process that is conserved across species, suggesting that the long-noted gap between perceptual versus motor combinatorial capabilities in human infants may arise partly from the challenges in constructing new pairwise vocal transitions.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676428/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676428/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lipkind, Dina -- Marcus, Gary F -- Bemis, Douglas K -- Sasahara, Kazutoshi -- Jacoby, Nori -- Takahasi, Miki -- Suzuki, Kenta -- Feher, Olga -- Ravbar, Primoz -- Okanoya, Kazuo -- Tchernichovski, Ofer -- R01 DC004722/DC/NIDCD NIH HHS/ -- England -- Nature. 2013 Jun 6;498(7452):104-8. doi: 10.1038/nature12173. Epub 2013 May 29.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Psychology, Hunter College, City University of New York, New York, NY 10065, USA. dina.lipkind@gmail.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23719373" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; *Child Language ; Finches/*physiology ; Humans ; Infant ; Male ; Models, Biological ; Phonetics ; Speech/physiology ; Time Factors ; Vocalization, Animal/*physiology
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  • 49
    Publication Date: 2013-07-13
    Description: Cell-surface receptors frequently use scaffold proteins to recruit cytoplasmic targets, but the rationale for this is uncertain. Activated receptor tyrosine kinases, for example, engage scaffolds such as Shc1 that contain phosphotyrosine (pTyr)-binding (PTB) domains. Using quantitative mass spectrometry, here we show that mammalian Shc1 responds to epidermal growth factor (EGF) stimulation through multiple waves of distinct phosphorylation events and protein interactions. After stimulation, Shc1 rapidly binds a group of proteins that activate pro-mitogenic or survival pathways dependent on recruitment of the Grb2 adaptor to Shc1 pTyr sites. Akt-mediated feedback phosphorylation of Shc1 Ser 29 then recruits the Ptpn12 tyrosine phosphatase. This is followed by a sub-network of proteins involved in cytoskeletal reorganization, trafficking and signal termination that binds Shc1 with delayed kinetics, largely through the SgK269 pseudokinase/adaptor protein. Ptpn12 acts as a switch to convert Shc1 from pTyr/Grb2-based signalling to SgK269-mediated pathways that regulate cell invasion and morphogenesis. The Shc1 scaffold therefore directs the temporal flow of signalling information after EGF stimulation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zheng, Yong -- Zhang, Cunjie -- Croucher, David R -- Soliman, Mohamed A -- St-Denis, Nicole -- Pasculescu, Adrian -- Taylor, Lorne -- Tate, Stephen A -- Hardy, W Rod -- Colwill, Karen -- Dai, Anna Yue -- Bagshaw, Rick -- Dennis, James W -- Gingras, Anne-Claude -- Daly, Roger J -- Pawson, Tony -- MOP-13466-6849/Canadian Institutes of Health Research/Canada -- England -- Nature. 2013 Jul 11;499(7457):166-71. doi: 10.1038/nature12308.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Avenue, Toronto M5G 1X5, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23846654" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breast/cytology ; Cell Line ; Epidermal Growth Factor/*metabolism ; Epithelial Cells/cytology ; Extracellular Signal-Regulated MAP Kinases/metabolism ; Feedback, Physiological ; GRB2 Adaptor Protein/deficiency/genetics/metabolism ; Humans ; Mice ; Multiprotein Complexes/chemistry/metabolism ; Phosphorylation ; Protein Binding ; Protein-Tyrosine Kinases ; Proto-Oncogene Proteins c-akt/metabolism ; Rats ; Receptor, Epidermal Growth Factor/agonists/metabolism ; Shc Signaling Adaptor Proteins/deficiency/genetics/*metabolism ; *Signal Transduction ; Time Factors
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  • 50
    Publication Date: 2013-05-10
    Description: To tackle incongruence, the topological conflict between different gene trees, phylogenomic studies couple concatenation with practices such as rogue taxon removal or the use of slowly evolving genes. Phylogenomic analysis of 1,070 orthologues from 23 yeast genomes identified 1,070 distinct gene trees, which were all incongruent with the phylogeny inferred from concatenation. Incongruence severity increased for shorter internodes located deeper in the phylogeny. Notably, whereas most practices had little or negative impact on the yeast phylogeny, the use of genes or internodes with high average internode support significantly improved the robustness of inference. We obtained similar results in analyses of vertebrate and metazoan phylogenomic data sets. These results question the exclusive reliance on concatenation and associated practices, and argue that selecting genes with strong phylogenetic signals and demonstrating the absence of significant incongruence are essential for accurately reconstructing ancient divergences.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Salichos, Leonidas -- Rokas, Antonis -- England -- Nature. 2013 May 16;497(7449):327-31. doi: 10.1038/nature12130. Epub 2013 May 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23657258" target="_blank"〉PubMed〈/a〉
    Keywords: Candida/genetics ; Databases, Genetic ; *Evolution, Molecular ; *Genes, Fungal ; Genome, Fungal/genetics ; Models, Genetic ; *Phylogeny ; Saccharomyces/genetics ; Sequence Alignment ; Time Factors
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  • 51
    Publication Date: 2013-04-13
    Description: Recently observed extreme temperatures at high northern latitudes are rare by definition, making the longer time span afforded by climate proxies important for assessing how the frequency of such extremes may be changing. Previous reconstructions of past temperature variability have demonstrated that recent warmth is anomalous relative to preceding centuries or millennia, but extreme events can be more thoroughly evaluated using a spatially resolved approach that provides an ensemble of possible temperature histories. Here, using a hierarchical Bayesian analysis of instrumental, tree-ring, ice-core and lake-sediment records, we show that the magnitude and frequency of recent warm temperature extremes at high northern latitudes are unprecedented in the past 600 years. The summers of 2005, 2007, 2010 and 2011 were warmer than those of all prior years back to 1400 (probability P 〉 0.95), in terms of the spatial average. The summer of 2010 was the warmest in the previous 600 years in western Russia (P 〉 0.99) and probably the warmest in western Greenland and the Canadian Arctic as well (P 〉 0.90). These and other recent extremes greatly exceed those expected from a stationary climate, but can be understood as resulting from constant space-time variability about an increased mean temperature.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tingley, Martin P -- Huybers, Peter -- England -- Nature. 2013 Apr 11;496(7444):201-5. doi: 10.1038/nature11969.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Earth and Planetary Sciences, Harvard University, 20 Oxford Street, Cambridge, Massachusetts 02138, USA. tingley@fas.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23579678" target="_blank"〉PubMed〈/a〉
    Keywords: Analysis of Variance ; Arctic Regions ; Bayes Theorem ; Canada ; Extreme Cold ; *Extreme Heat ; Geographic Mapping ; *Geography ; Global Warming/*history/*statistics & numerical data ; Greenland ; History, 15th Century ; History, 16th Century ; History, 17th Century ; History, 18th Century ; History, 19th Century ; History, 20th Century ; History, 21st Century ; Russia ; Seasons ; Time Factors
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  • 52
    Publication Date: 2013-05-17
    Description: Marine fishes and invertebrates respond to ocean warming through distribution shifts, generally to higher latitudes and deeper waters. Consequently, fisheries should be affected by 'tropicalization' of catch (increasing dominance of warm-water species). However, a signature of such climate-change effects on global fisheries catch has so far not been detected. Here we report such an index, the mean temperature of the catch (MTC), that is calculated from the average inferred temperature preference of exploited species weighted by their annual catch. Our results show that, after accounting for the effects of fishing and large-scale oceanographic variability, global MTC increased at a rate of 0.19 degrees Celsius per decade between 1970 and 2006, and non-tropical MTC increased at a rate of 0.23 degrees Celsius per decade. In tropical areas, MTC increased initially because of the reduction in the proportion of subtropical species catches, but subsequently stabilized as scope for further tropicalization of communities became limited. Changes in MTC in 52 large marine ecosystems, covering the majority of the world's coastal and shelf areas, are significantly and positively related to regional changes in sea surface temperature. This study shows that ocean warming has already affected global fisheries in the past four decades, highlighting the immediate need to develop adaptation plans to minimize the effect of such warming on the economy and food security of coastal communities, particularly in tropical regions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cheung, William W L -- Watson, Reg -- Pauly, Daniel -- England -- Nature. 2013 May 16;497(7449):365-8. doi: 10.1038/nature12156.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Changing Ocean Research Unit, Fisheries Centre, The University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada. w.cheung@fisheries.ubc.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23676754" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological/physiology ; Animals ; Conservation of Natural Resources/statistics & numerical data ; *Ecosystem ; Fisheries/economics/history/*statistics & numerical data ; Fishes/*classification/*physiology ; Food Supply/statistics & numerical data ; Geographic Mapping ; Global Warming/economics/history/prevention & control/*statistics & numerical ; data ; History, 20th Century ; History, 21st Century ; Internationality ; Oceans and Seas ; Population Dynamics ; *Seawater ; Species Specificity ; *Temperature ; Tropical Climate
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 53
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    Nature Publishing Group (NPG)
    Publication Date: 2013-11-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mace, Georgina -- England -- Nature. 2013 Nov 14;503(7475):191-2.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24236316" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Ecology/economics/*standards/*trends ; *Ecosystem ; Humans ; International Cooperation
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 54
    Publication Date: 2013-04-16
    Description: CRISPR/Cas (clustered regularly interspaced palindromic repeats/CRISPR-associated) systems are a bacterial defence against invading foreign nucleic acids derived from bacteriophages or exogenous plasmids. These systems use an array of small CRISPR RNAs (crRNAs) consisting of repetitive sequences flanking unique spacers to recognize their targets, and conserved Cas proteins to mediate target degradation. Recent studies have suggested that these systems may have broader functions in bacterial physiology, and it is unknown if they regulate expression of endogenous genes. Here we demonstrate that the Cas protein Cas9 of Francisella novicida uses a unique, small, CRISPR/Cas-associated RNA (scaRNA) to repress an endogenous transcript encoding a bacterial lipoprotein. As bacterial lipoproteins trigger a proinflammatory innate immune response aimed at combating pathogens, CRISPR/Cas-mediated repression of bacterial lipoprotein expression is critical for F. novicida to dampen this host response and promote virulence. Because Cas9 proteins are highly enriched in pathogenic and commensal bacteria, our work indicates that CRISPR/Cas-mediated gene regulation may broadly contribute to the regulation of endogenous bacterial genes, particularly during the interaction of such bacteria with eukaryotic hosts.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651764/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651764/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sampson, Timothy R -- Saroj, Sunil D -- Llewellyn, Anna C -- Tzeng, Yih-Ling -- Weiss, David S -- R56 AI061031/AI/NIAID NIH HHS/ -- R56 AI087673/AI/NIAID NIH HHS/ -- R56-AI061031/AI/NIAID NIH HHS/ -- R56-AI87673/AI/NIAID NIH HHS/ -- U54 AI057157/AI/NIAID NIH HHS/ -- U54-AI057157/AI/NIAID NIH HHS/ -- England -- Nature. 2013 May 9;497(7448):254-7. doi: 10.1038/nature12048. Epub 2013 Apr 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Microbiology and Molecular Genetics Program, Department of Microbiology and Immunology, Emory University, Atlanta, Georgia 30329, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23584588" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; Gammaproteobacteria/genetics/*immunology/metabolism/*pathogenicity ; Genes, Bacterial/genetics ; Host-Pathogen Interactions/immunology ; *Immune Evasion ; Immunity, Innate/*immunology ; Mice ; Mice, Inbred C57BL ; Phylogeny ; RNA, Bacterial/genetics/metabolism ; Time Factors ; Toll-Like Receptor 2/immunology/metabolism ; Virulence/genetics
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  • 55
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-03-01
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Noorden, Richard -- England -- Nature. 2013 Feb 28;494(7438):414-5. doi: 10.1038/494414a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23446395" target="_blank"〉PubMed〈/a〉
    Keywords: Access to Information/*legislation & jurisprudence ; *Federal Government ; Great Britain ; Public Policy/economics/legislation & jurisprudence ; *Research/legislation & jurisprudence ; Time Factors ; United States ; United States Government Agencies/economics/legislation & jurisprudence
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  • 56
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-02-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Noorden, Richard -- England -- Nature. 2013 Feb 14;494(7436):161. doi: 10.1038/494161a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23407520" target="_blank"〉PubMed〈/a〉
    Keywords: *Contract Services/economics ; Peer Review, Research/*methods ; Publishing/*economics/trends ; Time Factors
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  • 57
    Publication Date: 2013-02-22
    Description: Speaking is one of the most complex actions that we perform, but nearly all of us learn to do it effortlessly. Production of fluent speech requires the precise, coordinated movement of multiple articulators (for example, the lips, jaw, tongue and larynx) over rapid time scales. Here we used high-resolution, multi-electrode cortical recordings during the production of consonant-vowel syllables to determine the organization of speech sensorimotor cortex in humans. We found speech-articulator representations that are arranged somatotopically on ventral pre- and post-central gyri, and that partially overlap at individual electrodes. These representations were coordinated temporally as sequences during syllable production. Spatial patterns of cortical activity showed an emergent, population-level representation, which was organized by phonetic features. Over tens of milliseconds, the spatial patterns transitioned between distinct representations for different consonants and vowels. These results reveal the dynamic organization of speech sensorimotor cortex during the generation of multi-articulator movements that underlies our ability to speak.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606666/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606666/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bouchard, Kristofer E -- Mesgarani, Nima -- Johnson, Keith -- Chang, Edward F -- DP2 OD008627/OD/NIH HHS/ -- DP2-OD00862/OD/NIH HHS/ -- L30 NS060463/NS/NINDS NIH HHS/ -- R00 NS065120/NS/NINDS NIH HHS/ -- R00-NS065120/NS/NINDS NIH HHS/ -- R01 DC012379/DC/NIDCD NIH HHS/ -- R01-DC012379/DC/NIDCD NIH HHS/ -- England -- Nature. 2013 Mar 21;495(7441):327-32. doi: 10.1038/nature11911. Epub 2013 Feb 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurological Surgery, University of California, San Francisco, 505 Parnassus Avenue, San Francisco, California 94143, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426266" target="_blank"〉PubMed〈/a〉
    Keywords: Cerebral Cortex/*physiology ; Electromagnetic Phenomena ; Feedback, Sensory/physiology ; Humans ; Phonetics ; Principal Component Analysis ; Speech/*physiology ; Time Factors
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  • 58
    Publication Date: 2013-11-01
    Description: Neutralizing antibodies can confer immunity to primate lentiviruses by blocking infection in macaque models of AIDS. However, earlier studies of anti-human immunodeficiency virus type 1 (HIV-1) neutralizing antibodies administered to infected individuals or humanized mice reported poor control of virus replication and the rapid emergence of resistant variants. A new generation of anti-HIV-1 monoclonal antibodies, possessing extraordinary potency and breadth of neutralizing activity, has recently been isolated from infected individuals. These neutralizing antibodies target different regions of the HIV-1 envelope glycoprotein including the CD4-binding site, glycans located in the V1/V2, V3 and V4 regions, and the membrane proximal external region of gp41 (refs 9-14). Here we have examined two of the new antibodies, directed to the CD4-binding site and the V3 region (3BNC117 and 10-1074, respectively), for their ability to block infection and suppress viraemia in macaques infected with the R5 tropic simian-human immunodeficiency virus (SHIV)-AD8, which emulates many of the pathogenic and immunogenic properties of HIV-1 during infections of rhesus macaques. Either antibody alone can potently block virus acquisition. When administered individually to recently infected macaques, the 10-1074 antibody caused a rapid decline in virus load to undetectable levels for 4-7 days, followed by virus rebound during which neutralization-resistant variants became detectable. When administered together, a single treatment rapidly suppressed plasma viraemia for 3-5 weeks in some long-term chronically SHIV-infected animals with low CD4(+) T-cell levels. A second cycle of anti-HIV-1 monoclonal antibody therapy, administered to two previously treated animals, successfully controlled virus rebound. These results indicate that immunotherapy or a combination of immunotherapy plus conventional antiretroviral drugs might be useful as a treatment for chronically HIV-1-infected individuals experiencing immune dysfunction.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4133787/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4133787/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shingai, Masashi -- Nishimura, Yoshiaki -- Klein, Florian -- Mouquet, Hugo -- Donau, Olivia K -- Plishka, Ronald -- Buckler-White, Alicia -- Seaman, Michael -- Piatak, Michael Jr -- Lifson, Jeffrey D -- Dimitrov, Dimiter S -- Nussenzweig, Michel C -- Martin, Malcolm A -- HHSN261200800001E/PHS HHS/ -- P01 AI100148/AI/NIAID NIH HHS/ -- ZIA AI000415-29/Intramural NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2013 Nov 14;503(7475):277-80. doi: 10.1038/nature12746. Epub 2013 Oct 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA [2].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24172896" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Neutralizing/*therapeutic use ; Antigens, CD4/metabolism ; Binding Sites/immunology ; HIV Antibodies/*therapeutic use ; HIV Envelope Protein gp120/immunology ; HIV-1/*immunology ; *Immunotherapy ; Macaca/immunology ; Molecular Sequence Data ; Peptide Fragments/immunology ; Simian Acquired Immunodeficiency Syndrome/prevention & control/*therapy ; Simian Immunodeficiency Virus/*physiology ; Time Factors ; Viral Load ; Viremia/*therapy
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  • 59
    Publication Date: 2013-07-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Medlyn, Belinda -- De Kauwe, Martin -- England -- Nature. 2013 Jul 18;499(7458):287-9. doi: 10.1038/nature12411. Epub 2013 Jul 10.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23842496" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon Dioxide/*analysis ; *Ecosystem ; Trees/*chemistry ; Water/*analysis
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  • 60
    Publication Date: 2013-08-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gubbi, Sanjay -- Poornesha, H C -- England -- Nature. 2013 Aug 1;500(7460):29. doi: 10.1038/500029d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23903740" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/*methods ; *Ecosystem ; Endangered Species ; India ; *Tigers/genetics
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  • 61
    Publication Date: 2013-05-03
    Description: There is a pressing need to develop alternatives to annual influenza vaccines and antiviral agents licensed for mitigating influenza infection. Previous studies reported that acute lung injury caused by chemical or microbial insults is secondary to the generation of host-derived, oxidized phospholipid that potently stimulates Toll-like receptor 4 (TLR4)-dependent inflammation. Subsequently, we reported that Tlr4(-/-) mice are highly refractory to influenza-induced lethality, and proposed that therapeutic antagonism of TLR4 signalling would protect against influenza-induced acute lung injury. Here we report that therapeutic administration of Eritoran (also known as E5564)-a potent, well-tolerated, synthetic TLR4 antagonist-blocks influenza-induced lethality in mice, as well as lung pathology, clinical symptoms, cytokine and oxidized phospholipid expression, and decreases viral titres. CD14 and TLR2 are also required for Eritoran-mediated protection, and CD14 directly binds Eritoran and inhibits ligand binding to MD2. Thus, Eritoran blockade of TLR signalling represents a novel therapeutic approach for inflammation associated with influenza, and possibly other infections.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725830/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725830/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shirey, Kari Ann -- Lai, Wendy -- Scott, Alison J -- Lipsky, Michael -- Mistry, Pragnesh -- Pletneva, Lioubov M -- Karp, Christopher L -- McAlees, Jaclyn -- Gioannini, Theresa L -- Weiss, Jerrold -- Chen, Wilbur H -- Ernst, Robert K -- Rossignol, Daniel P -- Gusovsky, Fabian -- Blanco, Jorge C G -- Vogel, Stefanie N -- AI018797/AI/NIAID NIH HHS/ -- AI057575/AI/NIAID NIH HHS/ -- AI059372/AI/NIAID NIH HHS/ -- NCRR K12-RR-023250/PHS HHS/ -- R01 AI018797/AI/NIAID NIH HHS/ -- R01 AI057575/AI/NIAID NIH HHS/ -- R01 AI059372/AI/NIAID NIH HHS/ -- T32 AI007540/AI/NIAID NIH HHS/ -- England -- Nature. 2013 May 23;497(7450):498-502. doi: 10.1038/nature12118. Epub 2013 May 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Immunology, University of Maryland, Baltimore, Baltimore, Maryland 21201, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23636320" target="_blank"〉PubMed〈/a〉
    Keywords: Acute Lung Injury/complications/drug therapy/pathology/prevention & control ; Animals ; Antigens, CD14/metabolism ; Antiviral Agents/*pharmacology/therapeutic use ; Cytokines/genetics/immunology ; Disaccharides/metabolism/*pharmacology/*therapeutic use ; Female ; Influenza A Virus, H1N1 Subtype/*drug effects/*pathogenicity ; Ligands ; Lymphocyte Antigen 96/metabolism ; Mice ; Mice, Inbred C57BL ; Orthomyxoviridae Infections/*drug therapy/immunology/pathology/virology ; Sugar Phosphates/metabolism/*pharmacology/*therapeutic use ; Survival Analysis ; Time Factors ; Toll-Like Receptor 2/immunology/metabolism ; Toll-Like Receptor 4/*antagonists & inhibitors/immunology
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  • 62
    Publication Date: 2013-08-16
    Description: The cause of warming in the Southern Hemisphere during the most recent deglaciation remains a matter of debate. Hypotheses for a Northern Hemisphere trigger, through oceanic redistributions of heat, are based in part on the abrupt onset of warming seen in East Antarctic ice cores and dated to 18,000 years ago, which is several thousand years after high-latitude Northern Hemisphere summer insolation intensity began increasing from its minimum, approximately 24,000 years ago. An alternative explanation is that local solar insolation changes cause the Southern Hemisphere to warm independently. Here we present results from a new, annually resolved ice-core record from West Antarctica that reconciles these two views. The records show that 18,000 years ago snow accumulation in West Antarctica began increasing, coincident with increasing carbon dioxide concentrations, warming in East Antarctica and cooling in the Northern Hemisphere associated with an abrupt decrease in Atlantic meridional overturning circulation. However, significant warming in West Antarctica began at least 2,000 years earlier. Circum-Antarctic sea-ice decline, driven by increasing local insolation, is the likely cause of this warming. The marine-influenced West Antarctic records suggest a more active role for the Southern Ocean in the onset of deglaciation than is inferred from ice cores in the East Antarctic interior, which are largely isolated from sea-ice changes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉WAIS Divide Project Members -- England -- Nature. 2013 Aug 22;500(7463):440-4. doi: 10.1038/nature12376. Epub 2013 Aug 14.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23945585" target="_blank"〉PubMed〈/a〉
    Keywords: Antarctic Regions ; Atmosphere/chemistry ; Carbon Dioxide/analysis ; Global Warming/*statistics & numerical data ; History, Ancient ; *Ice Cover ; Methane/analysis ; Models, Theoretical ; Oceans and Seas ; Oxygen Isotopes/analysis ; Seawater/analysis/chemistry ; Snow ; Sodium Chloride/analysis ; *Temperature ; Time Factors ; Water Movements
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  • 63
    Publication Date: 2013-02-01
    Description: Arising from S. Pawar, A. I. Dell & V. M. Savage 486, 485-489 10.1038/nature11131(2012)A recent paper by Pawar and colleagues has provided important insights into the consequences of foraging behaviour for food-web dynamics. One notable pattern predicted by their analysis is that consumption rate (c) scales superlinearly (cm(1.16)) with consumer body mass (m) in three-dimensional (3D), but not two-dimensional (2D), foraging spaces. Although we feel that the authors should be applauded for this interesting contribution, we argue that their result is not consistent with established life-history theory. To resolve this contradiction, progress in both fields is probably required, including new empirical studies in which consumption rate, metabolism and dimensionality are examined directly under natural conditions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Giacomini, Henrique C -- Shuter, Brian J -- de Kerckhove, Derrick T -- Abrams, Peter A -- England -- Nature. 2013 Jan 31;493(7434):E1-2; discussion E2-3. doi: 10.1038/nature11829.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, University of Toronto, 25 Harbord St., Toronto, Ontario M5S 3G5, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23364748" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Ecosystem ; Feeding Behavior/*physiology ; *Food Chain ; *Models, Biological
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  • 64
    Publication Date: 2013-12-18
    Description: The North Pacific subtropical gyre (NPSG) plays a major part in the export of carbon and other nutrients to the deep ocean. Primary production in the NPSG has increased in recent decades despite a reduction in nutrient supply to surface waters. It is thought that this apparent paradox can be explained by a shift in plankton community structure from mostly eukaryotes to mostly nitrogen-fixing prokaryotes. It remains uncertain, however, whether the plankton community domain shift can be linked to cyclical climate variability or a long-term global warming trend. Here we analyse records of bulk and amino-acid-specific (15)N/(14)N isotopic ratios (delta(15)N) preserved in the skeletons of long-lived deep-sea proteinaceous corals collected from the Hawaiian archipelago; these isotopic records serve as a proxy for the source of nitrogen-supported export production through time. We find that the recent increase in nitrogen fixation is the continuation of a much larger, centennial-scale trend. After a millennium of relatively minor fluctuation, delta(15)N decreases between 1850 and the present. The total shift in delta(15)N of -2 per mil over this period is comparable to the total change in global mean sedimentary delta(15)N across the Pleistocene-Holocene transition, but it is happening an order of magnitude faster. We use a steady-state model and find that the isotopic mass balance between nitrate and nitrogen fixation implies a 17 to 27 per cent increase in nitrogen fixation over this time period. A comparison with independent records suggests that the increase in nitrogen fixation might be linked to Northern Hemisphere climate change since the end of the Little Ice Age.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sherwood, Owen A -- Guilderson, Thomas P -- Batista, Fabian C -- Schiff, John T -- McCarthy, Matthew D -- England -- Nature. 2014 Jan 2;505(7481):78-81. doi: 10.1038/nature12784. Epub 2013 Dec 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Ocean Sciences Department, University of California, Santa Cruz, California 95064, USA [2] Institute of Arctic and Alpine Research, University of Colorado, Boulder, Colorado 80309, USA. ; 1] Ocean Sciences Department, University of California, Santa Cruz, California 95064, USA [2] Lawrence Livermore National Laboratory, Livermore, California 94550, USA [3] Institute for Marine Sciences, University of California, Santa Cruz, California 95064, USA. ; Ocean Sciences Department, University of California, Santa Cruz, California 95064, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24336216" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acids/chemistry ; Animals ; Anthozoa/chemistry/metabolism ; Aquatic Organisms/*metabolism ; Climate Change ; Ecosystem ; Hawaii ; History, 15th Century ; History, 16th Century ; History, 17th Century ; History, 19th Century ; History, 20th Century ; History, 21st Century ; History, Ancient ; History, Medieval ; *Ice Cover ; Nitrates/analysis ; *Nitrogen Fixation ; Nitrogen Isotopes/analysis ; Pacific Ocean ; Plankton/metabolism ; Radiometric Dating ; Seawater/chemistry ; Time Factors ; Tropical Climate
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  • 65
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    Nature Publishing Group (NPG)
    Publication Date: 2013-08-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 May 23;497(7450):409-10.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23936909" target="_blank"〉PubMed〈/a〉
    Keywords: Budgets/*legislation & jurisprudence/*trends ; Environmental Monitoring/economics ; *Federal Government ; Financing, Organized/economics ; Research/*economics/*trends ; Research Personnel/economics ; Research Support as Topic/economics/legislation & jurisprudence ; Time Factors ; *Uncertainty ; United States ; United States Government Agencies/economics
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  • 66
    Publication Date: 2013-02-05
    Description: Cancer control by adaptive immunity involves a number of defined death and clearance mechanisms. However, efficient inhibition of exponential cancer growth by T cells and interferon-gamma (IFN-gamma) requires additional undefined mechanisms that arrest cancer cell proliferation. Here we show that the combined action of the T-helper-1-cell cytokines IFN-gamma and tumour necrosis factor (TNF) directly induces permanent growth arrest in cancers. To safely separate senescence induced by tumour immunity from oncogene-induced senescence, we used a mouse model in which the Simian virus 40 large T antigen (Tag) expressed under the control of the rat insulin promoter creates tumours by attenuating p53- and Rb-mediated cell cycle control. When combined, IFN-gamma and TNF drive Tag-expressing cancers into senescence by inducing permanent growth arrest in G1/G0, activation of p16INK4a (also known as CDKN2A), and downstream Rb hypophosphorylation at serine 795. This cytokine-induced senescence strictly requires STAT1 and TNFR1 (also known as TNFRSF1A) signalling in addition to p16INK4a. In vivo, Tag-specific T-helper 1 cells permanently arrest Tag-expressing cancers by inducing IFN-gamma- and TNFR1-dependent senescence. Conversely, Tnfr1(-/-)Tag-expressing cancers resist cytokine-induced senescence and grow aggressively, even in TNFR1-expressing hosts. Finally, as IFN-gamma and TNF induce senescence in numerous murine and human cancers, this may be a general mechanism for arresting cancer progression.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Braumuller, Heidi -- Wieder, Thomas -- Brenner, Ellen -- Assmann, Sonja -- Hahn, Matthias -- Alkhaled, Mohammed -- Schilbach, Karin -- Essmann, Frank -- Kneilling, Manfred -- Griessinger, Christoph -- Ranta, Felicia -- Ullrich, Susanne -- Mocikat, Ralph -- Braungart, Kilian -- Mehra, Tarun -- Fehrenbacher, Birgit -- Berdel, Julia -- Niessner, Heike -- Meier, Friedegund -- van den Broek, Maries -- Haring, Hans-Ulrich -- Handgretinger, Rupert -- Quintanilla-Martinez, Leticia -- Fend, Falko -- Pesic, Marina -- Bauer, Jurgen -- Zender, Lars -- Schaller, Martin -- Schulze-Osthoff, Klaus -- Rocken, Martin -- England -- Nature. 2013 Feb 21;494(7437):361-5. doi: 10.1038/nature11824. Epub 2013 Feb 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Dermatology, Eberhard Karls University, Liebermeister Strasse 25, 72076 Tubingen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23376950" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, Polyomavirus Transforming/genetics/metabolism ; Cell Aging/*immunology ; Cell Cycle ; Cell Proliferation ; Cyclin-Dependent Kinase Inhibitor p16/deficiency/genetics/metabolism ; Cytokines/*immunology ; Disease Models, Animal ; Disease Progression ; Female ; Humans ; Interferon-gamma/immunology ; Male ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Mice, Transgenic ; Neoplasms/*immunology/*pathology ; Oncogenes/genetics ; Phosphoserine/metabolism ; Receptors, Tumor Necrosis Factor, Type I/metabolism ; Retinoblastoma Protein/chemistry/metabolism ; STAT1 Transcription Factor/metabolism ; Th1 Cells/*immunology ; Time Factors ; Tumor Cells, Cultured ; Tumor Necrosis Factor-alpha/immunology ; Tumor Suppressor Protein p53/metabolism
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  • 67
    Publication Date: 2013-12-07
    Description: To sustain neurotransmission, synaptic vesicles and their associated proteins must be recycled locally at synapses. Synaptic vesicles are thought to be regenerated approximately 20 s after fusion by the assembly of clathrin scaffolds or in approximately 1 s by the reversal of fusion pores via 'kiss-and-run' endocytosis. Here we use optogenetics to stimulate cultured hippocampal neurons with a single stimulus, rapidly freeze them after fixed intervals and examine the ultrastructure using electron microscopy--'flash-and-freeze' electron microscopy. Docked vesicles fuse and collapse into the membrane within 30 ms of the stimulus. Compensatory endocytosis occurs within 50 to 100 ms at sites flanking the active zone. Invagination is blocked by inhibition of actin polymerization, and scission is blocked by inhibiting dynamin. Because intact synaptic vesicles are not recovered, this form of recycling is not compatible with kiss-and-run endocytosis; moreover, it is 200-fold faster than clathrin-mediated endocytosis. It is likely that 'ultrafast endocytosis' is specialized to restore the surface area of the membrane rapidly.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957339/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957339/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Watanabe, Shigeki -- Rost, Benjamin R -- Camacho-Perez, Marcial -- Davis, M Wayne -- Sohl-Kielczynski, Berit -- Rosenmund, Christian -- Jorgensen, Erik M -- NS034307/NS/NINDS NIH HHS/ -- R01 NS034307/NS/NINDS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2013 Dec 12;504(7479):242-7. doi: 10.1038/nature12809. Epub 2013 Dec 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology and Howard Hughes Medical Institute, University of Utah, Salt Lake City 84112, Utah, USA. ; 1] Neuroscience Research Centre, Charite Universitatsmedizin, 10117 Berlin, Germany [2] German Center for Neurodegenerative Diseases (DZNE), 10117 Berlin, Germany. [3]. ; 1] Neuroscience Research Centre, Charite Universitatsmedizin, 10117 Berlin, Germany [2]. ; Neuroscience Research Centre, Charite Universitatsmedizin, 10117 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24305055" target="_blank"〉PubMed〈/a〉
    Keywords: Actins/metabolism/ultrastructure ; Action Potentials ; Animals ; Dynamins/metabolism/ultrastructure ; *Endocytosis ; Exocytosis ; Hippocampus/*cytology ; Membrane Fusion ; Mice ; Microscopy, Electron ; Rhodopsin/genetics/metabolism ; Synapses/*metabolism/ultrastructure ; Synaptic Transmission ; Synaptic Vesicles/metabolism/ultrastructure ; Time Factors
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  • 68
    Publication Date: 2013-06-28
    Description: Attention is a critical component of perception. However, the mechanisms by which attention modulates neuronal communication to guide behaviour are poorly understood. To elucidate the synaptic mechanisms of attention, we developed a sensitive assay of attentional modulation of neuronal communication. In alert monkeys performing a visual spatial attention task, we probed thalamocortical communication by electrically stimulating neurons in the lateral geniculate nucleus of the thalamus while simultaneously recording shock-evoked responses from monosynaptically connected neurons in primary visual cortex. We found that attention enhances neuronal communication by increasing the efficacy of presynaptic input in driving postsynaptic responses, by increasing synchronous responses among ensembles of postsynaptic neurons receiving independent input, and by decreasing redundant signals between postsynaptic neurons receiving common input. The results demonstrate that attention finely tunes neuronal communication at the synaptic level by selectively altering synaptic weights, enabling enhanced detection of salient events in the noisy sensory environment.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725204/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725204/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Briggs, Farran -- Mangun, George R -- Usrey, W Martin -- EY013588/EY/NEI NIH HHS/ -- EY18683/EY/NEI NIH HHS/ -- K99 EY018683/EY/NEI NIH HHS/ -- MH055714/MH/NIMH NIH HHS/ -- R00 EY018683/EY/NEI NIH HHS/ -- R01 EY013588/EY/NEI NIH HHS/ -- R01 MH055714/MH/NIMH NIH HHS/ -- England -- Nature. 2013 Jul 25;499(7459):476-80. doi: 10.1038/nature12276. Epub 2013 Jun 26.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Neuroscience, University of California, Davis, 1544 Newton Court, Davis, California 95618, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23803766" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Attention/*physiology ; Electric Stimulation ; Female ; Geniculate Bodies/cytology/physiology ; Macaca mulatta/*physiology ; Neurons/*physiology ; Photic Stimulation ; Signal-To-Noise Ratio ; Synapses/*physiology ; *Synaptic Transmission ; Time Factors ; Visual Cortex/cytology/physiology ; Visual Pathways/cytology/*physiology
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  • 69
    Publication Date: 2013-04-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kaufman, Matthew T -- Churchland, Anne K -- England -- Nature. 2013 Apr 11;496(7444):172-3. doi: 10.1038/496172a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23579673" target="_blank"〉PubMed〈/a〉
    Keywords: Acoustic Stimulation ; Animals ; Cognition/*physiology ; Decision Making/*physiology ; Humans ; Models, Neurological ; Primates/physiology ; Rats ; Time Factors
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  • 70
    Publication Date: 2013-03-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McCann, Niall -- ter Wengel, Pablo Orozco -- Stanton, David -- England -- Nature. 2013 Mar 7;495(7439):47. doi: 10.1038/495047d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23467162" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Ecology/*methods ; *Ecosystem ; *Models, Biological
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  • 71
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-01-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goymer, Patrick -- England -- Nature. 2013 Jan 17;493(7432):312. doi: 10.1038/493312a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23325210" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Behavior, Animal/*physiology ; *Biological Evolution ; *Ecosystem ; Female ; Male ; Peromyscus/*genetics/*physiology ; Quantitative Trait Loci/*genetics
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  • 72
    Publication Date: 2013-12-24
    Description: In 1997, it was predicted that an electronically excited atom or molecule placed in a loosely bound chemical system (such as a hydrogen-bonded or van-der-Waals-bonded cluster) could efficiently decay by transferring its excess energy to a neighbouring species that would then emit a low-energy electron. This intermolecular Coulombic decay (ICD) process has since been shown to be a common phenomenon, raising questions about its role in DNA damage induced by ionizing radiation, in which low-energy electrons are known to play an important part. It was recently suggested that ICD can be triggered efficiently and site-selectively by resonantly core-exciting a target atom, which then transforms through Auger decay into an ionic species with sufficiently high excitation energy to permit ICD to occur. Here we show experimentally that resonant Auger decay can indeed trigger ICD in dimers of both molecular nitrogen and carbon monoxide. By using ion and electron momentum spectroscopy to measure simultaneously the charged species created in the resonant-Auger-driven ICD cascade, we find that ICD occurs in less time than the 20 femtoseconds it would take for individual molecules to undergo dissociation. Our experimental confirmation of this process and its efficiency may trigger renewed efforts to develop resonant X-ray excitation schemes for more localized and targeted cancer radiation therapy.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Trinter, F -- Schoffler, M S -- Kim, H-K -- Sturm, F P -- Cole, K -- Neumann, N -- Vredenborg, A -- Williams, J -- Bocharova, I -- Guillemin, R -- Simon, M -- Belkacem, A -- Landers, A L -- Weber, Th -- Schmidt-Bocking, H -- Dorner, R -- Jahnke, T -- England -- Nature. 2014 Jan 30;505(7485):664-6. doi: 10.1038/nature12927. Epub 2013 Dec 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Kernphysik, Goethe-Universitat, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany. ; 1] Institut fur Kernphysik, Goethe-Universitat, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany [2] Lawrence Berkeley National Laboratory, Chemical Sciences Division, Berkeley, California 94720, USA. ; Department of Physics, Auburn University, Auburn, Alabama 36849, USA. ; Lawrence Berkeley National Laboratory, Chemical Sciences Division, Berkeley, California 94720, USA. ; UPMC and CNRS, UMR 7614, Laboratoire de Chimie Physique Matiere et Rayonnement, 75005 Paris, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24362568" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon Monoxide/chemistry ; DNA Damage/radiation effects ; *Electrons/therapeutic use ; Ions ; Kinetics ; Neoplasms/radiotherapy ; Nitrogen/chemistry ; Spectrum Analysis ; Time Factors ; X-Rays
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  • 73
    Publication Date: 2013-11-15
    Description: The remarkable ecological and demographic success of humanity is largely attributed to our capacity for cumulative culture. The accumulation of beneficial cultural innovations across generations is puzzling because transmission events are generally imperfect, although there is large variance in fidelity. Events of perfect cultural transmission and innovations should be more frequent in a large population. As a consequence, a large population size may be a prerequisite for the evolution of cultural complexity, although anthropological studies have produced mixed results and empirical evidence is lacking. Here we use a dual-task computer game to show that cultural evolution strongly depends on population size, as players in larger groups maintained higher cultural complexity. We found that when group size increases, cultural knowledge is less deteriorated, improvements to existing cultural traits are more frequent, and cultural trait diversity is maintained more often. Our results demonstrate how changes in group size can generate both adaptive cultural evolution and maladaptive losses of culturally acquired skills. As humans live in habitats for which they are ill-suited without specific cultural adaptations, it suggests that, in our evolutionary past, group-size reduction may have exposed human societies to significant risks, including societal collapse.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Derex, Maxime -- Beugin, Marie-Pauline -- Godelle, Bernard -- Raymond, Michel -- England -- Nature. 2013 Nov 21;503(7476):389-91. doi: 10.1038/nature12774. Epub 2013 Nov 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Montpellier II, Place Eugene Bataillon, 34095 Montpellier Cedex 5, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24226775" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Adolescent ; Adult ; Biological Evolution ; Cultural Diversity ; *Cultural Evolution ; Ecosystem ; *Games, Experimental ; Humans ; Knowledge ; Learning ; Male ; Middle Aged ; Models, Theoretical ; *Population Density ; Random Allocation ; Time Factors ; Video Games ; Young Adult
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  • 74
    Publication Date: 2013-06-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Slippers, Bernard -- England -- Nature. 2013 Jun 20;498(7454):299. doi: 10.1038/498299d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23783618" target="_blank"〉PubMed〈/a〉
    Keywords: Administrative Personnel ; *Communication ; Leadership ; *Public Opinion ; Public Policy ; Research Personnel/*education ; Social Responsibility ; Time Factors
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  • 75
    Publication Date: 2013-07-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Whiteman, Gail -- Hope, Chris -- Wadhams, Peter -- England -- Nature. 2013 Jul 25;499(7459):401-3. doi: 10.1038/499401a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Erasmus University Rotterdam, the Netherlands. gwhiteman@rsm.nl〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23887416" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arctic Regions ; *Freezing ; *Global Warming/economics/statistics & numerical data ; Humans ; Methane/*adverse effects/*analysis/economics ; *Models, Economic ; Natural Gas/supply & distribution ; Petroleum/supply & distribution ; Seawater/analysis/chemistry ; Time Factors
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  • 76
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-03-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 Feb 28;494(7438):401.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23451350" target="_blank"〉PubMed〈/a〉
    Keywords: Access to Information/*legislation & jurisprudence ; *Federal Government ; Great Britain ; National Institutes of Health (U.S.)/legislation & jurisprudence ; Public Policy ; Public Sector/*economics/*legislation & jurisprudence ; *Research/economics/legislation & jurisprudence ; Time Factors ; United States
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  • 77
    Publication Date: 2013-11-01
    Description: The biogeochemical cycles of carbon (C), nitrogen (N) and phosphorus (P) are interlinked by primary production, respiration and decomposition in terrestrial ecosystems. It has been suggested that the C, N and P cycles could become uncoupled under rapid climate change because of the different degrees of control exerted on the supply of these elements by biological and geochemical processes. Climatic controls on biogeochemical cycles are particularly relevant in arid, semi-arid and dry sub-humid ecosystems (drylands) because their biological activity is mainly driven by water availability. The increase in aridity predicted for the twenty-first century in many drylands worldwide may therefore threaten the balance between these cycles, differentially affecting the availability of essential nutrients. Here we evaluate how aridity affects the balance between C, N and P in soils collected from 224 dryland sites from all continents except Antarctica. We find a negative effect of aridity on the concentration of soil organic C and total N, but a positive effect on the concentration of inorganic P. Aridity is negatively related to plant cover, which may favour the dominance of physical processes such as rock weathering, a major source of P to ecosystems, over biological processes that provide more C and N, such as litter decomposition. Our findings suggest that any predicted increase in aridity with climate change will probably reduce the concentrations of N and C in global drylands, but increase that of P. These changes would uncouple the C, N and P cycles in drylands and could negatively affect the provision of key services provided by these ecosystems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Delgado-Baquerizo, Manuel -- Maestre, Fernando T -- Gallardo, Antonio -- Bowker, Matthew A -- Wallenstein, Matthew D -- Quero, Jose Luis -- Ochoa, Victoria -- Gozalo, Beatriz -- Garcia-Gomez, Miguel -- Soliveres, Santiago -- Garcia-Palacios, Pablo -- Berdugo, Miguel -- Valencia, Enrique -- Escolar, Cristina -- Arredondo, Tulio -- Barraza-Zepeda, Claudia -- Bran, Donaldo -- Carreira, Jose Antonio -- Chaieb, Mohamed -- Conceicao, Abel A -- Derak, Mchich -- Eldridge, David J -- Escudero, Adrian -- Espinosa, Carlos I -- Gaitan, Juan -- Gatica, M Gabriel -- Gomez-Gonzalez, Susana -- Guzman, Elizabeth -- Gutierrez, Julio R -- Florentino, Adriana -- Hepper, Estela -- Hernandez, Rosa M -- Huber-Sannwald, Elisabeth -- Jankju, Mohammad -- Liu, Jushan -- Mau, Rebecca L -- Miriti, Maria -- Monerris, Jorge -- Naseri, Kamal -- Noumi, Zouhaier -- Polo, Vicente -- Prina, Anibal -- Pucheta, Eduardo -- Ramirez, Elizabeth -- Ramirez-Collantes, David A -- Romao, Roberto -- Tighe, Matthew -- Torres, Duilio -- Torres-Diaz, Cristian -- Ungar, Eugene D -- Val, James -- Wamiti, Wanyoike -- Wang, Deli -- Zaady, Eli -- England -- Nature. 2013 Oct 31;502(7473):672-6. doi: 10.1038/nature12670.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Departamento de Sistemas Fisicos, Quimicos y Naturales, Universidad Pablo de Olavide, Carretera de Utrera, kilometro 1, 41013 Sevilla, Spain [2] Area de Biodiversidad y Conservacion, Departamento de Biologia y Geologia, Escuela Superior de Ciencias Experimentales y Tecnologia, Universidad Rey Juan Carlos, Calle Tulipan Sin Numero, 28933 Mostoles, Spain.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24172979" target="_blank"〉PubMed〈/a〉
    Keywords: Aluminum Silicates/analysis ; Biomass ; Carbon/analysis/metabolism ; Carbon Cycle ; Climate Change ; *Desert Climate ; *Desiccation ; *Ecosystem ; *Geography ; Models, Theoretical ; Nitrogen/analysis/metabolism ; Nitrogen Cycle ; Phosphoric Monoester Hydrolases/analysis/metabolism ; Phosphorus/analysis/metabolism ; Plants/metabolism ; Soil/*chemistry
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  • 78
    Publication Date: 2013-01-18
    Description: Relative to morphological traits, we know little about how genetics influence the evolution of complex behavioural differences in nature. It is unclear how the environment influences natural variation in heritable behaviour, and whether complex behavioural differences evolve through few genetic changes, each affecting many aspects of behaviour, or through the accumulation of several genetic changes that, when combined, give rise to behavioural complexity. Here we show that in nature, oldfield mice (Peromyscus polionotus) build complex burrows with long entrance and escape tunnels, and that burrow length is consistent across populations, although burrow depth varies with soil composition. This burrow architecture is in contrast with the small, simple burrows of its sister species, deer mice (P. maniculatus). When investigated under laboratory conditions, both species recapitulate their natural burrowing behaviour. Genetic crosses between the two species reveal that the derived burrows of oldfield mice are dominant and evolved through the addition of multiple genetic changes. In burrows built by first-generation backcross mice, entrance-tunnel length and the presence of an escape tunnel can be uncoupled, suggesting that these traits are modular. Quantitative trait locus analysis also indicates that tunnel length segregates as a complex trait, affected by at least three independent genetic regions, whereas the presence of an escape tunnel is associated with only a single locus. Together, these results suggest that complex behaviours--in this case, a classic 'extended phenotype'--can evolve through multiple genetic changes each affecting distinct behaviour modules.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Weber, Jesse N -- Peterson, Brant K -- Hoekstra, Hopi E -- England -- Nature. 2013 Jan 17;493(7432):402-5. doi: 10.1038/nature11816.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Organismic & Evolutionary Biology, Museum of Comparative Zoology, 26 Oxford Street, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23325221" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Wild/genetics/physiology ; Behavior, Animal/*physiology ; *Biological Evolution ; Crosses, Genetic ; *Ecosystem ; Evolution, Molecular ; Female ; Genotype ; Male ; Models, Genetic ; Nesting Behavior/physiology ; Peromyscus/*genetics/*physiology ; Quantitative Trait Loci/*genetics
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  • 79
    Publication Date: 2013-01-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Webster, Peter J -- England -- Nature. 2013 Jan 3;493(7430):17-9. doi: 10.1038/493017a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Georgia Institute of Technology, Atlanta, USA. pjw@eas.gatech.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23282347" target="_blank"〉PubMed〈/a〉
    Keywords: Bangladesh/epidemiology ; Cyclonic Storms/mortality ; *Developing Countries/economics/statistics & numerical data ; Disasters/economics/prevention & control/*statistics & numerical data ; Droughts/mortality ; Floods/mortality ; Forecasting/*methods ; Humans ; Meteorology/*methods/standards ; Starvation/epidemiology ; Time Factors ; *Weather
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  • 80
    Publication Date: 2013-11-05
    Description: DNA replication initiates at defined sites called origins, which serve as binding sites for initiator proteins that recruit the replicative machinery. Origins differ in number and structure across the three domains of life and their properties determine the dynamics of chromosome replication. Bacteria and some archaea replicate from single origins, whereas most archaea and all eukaryotes replicate using multiple origins. Initiation mechanisms that rely on homologous recombination operate in some viruses. Here we show that such mechanisms also operate in archaea. We use deep sequencing to study replication in Haloferax volcanii and identify four chromosomal origins of differing activity. Deletion of individual origins results in perturbed replication dynamics and reduced growth. However, a strain lacking all origins has no apparent defects and grows significantly faster than wild type. Origin-less cells initiate replication at dispersed sites rather than at discrete origins and have an absolute requirement for the recombinase RadA, unlike strains lacking individual origins. Our results demonstrate that homologous recombination alone can efficiently initiate the replication of an entire cellular genome. This raises the question of what purpose replication origins serve and why they have evolved.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843117/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843117/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hawkins, Michelle -- Malla, Sunir -- Blythe, Martin J -- Nieduszynski, Conrad A -- Allers, Thorsten -- BB/C501641/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- BB/E023754/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- BB/G001596/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- England -- Nature. 2013 Nov 28;503(7477):544-7. doi: 10.1038/nature12650. Epub 2013 Nov 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] School of Biology, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK [2].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24185008" target="_blank"〉PubMed〈/a〉
    Keywords: Archaeal Proteins/metabolism ; DNA Replication/*genetics ; DNA, Archaeal/analysis/biosynthesis/genetics ; DNA-Binding Proteins/metabolism ; Evolution, Molecular ; Haloferax volcanii/*genetics/*growth & development ; High-Throughput Nucleotide Sequencing ; Homologous Recombination/genetics ; Models, Genetic ; *Replication Origin/genetics ; Time Factors
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  • 81
    Publication Date: 2013-05-17
    Description: An ambitious goal in biology is to understand the behaviour of cells during development by imaging-in vivo and with subcellular resolution-changes of the embryonic structure. Important morphogenetic movements occur throughout embryogenesis, but in particular during gastrulation when a series of dramatic, coordinated cell movements drives the reorganization of a simple ball or sheet of cells into a complex multi-layered organism. In Xenopus laevis, the South African clawed frog and also in zebrafish, cell and tissue movements have been studied in explants, in fixed embryos, in vivo using fluorescence microscopy or microscopic magnetic resonance imaging. None of these methods allows cell behaviours to be observed with micrometre-scale resolution throughout the optically opaque, living embryo over developmental time. Here we use non-invasive in vivo, time-lapse X-ray microtomography, based on single-distance phase contrast and combined with motion analysis, to examine the course of embryonic development. We demonstrate that this powerful four-dimensional imaging technique provides high-resolution views of gastrulation processes in wild-type X. laevis embryos, including vegetal endoderm rotation, archenteron formation, changes in the volumes of cavities within the porous interstitial tissue between archenteron and blastocoel, migration/confrontation of mesendoderm and closure of the blastopore. Differential flow analysis separates collective from relative cell motion to assign propulsion mechanisms. Moreover, digitally determined volume balances confirm that early archenteron inflation occurs through the uptake of external water. A transient ectodermal ridge, formed in association with the confrontation of ventral and head mesendoderm on the blastocoel roof, is identified. When combined with perturbation experiments to investigate molecular and biomechanical underpinnings of morphogenesis, our technique should help to advance our understanding of the fundamentals of development.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4220246/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4220246/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Moosmann, Julian -- Ershov, Alexey -- Altapova, Venera -- Baumbach, Tilo -- Prasad, Maneeshi S -- LaBonne, Carole -- Xiao, Xianghui -- Kashef, Jubin -- Hofmann, Ralf -- R01 CA114058/CA/NCI NIH HHS/ -- R01 GM077288/GM/NIGMS NIH HHS/ -- England -- Nature. 2013 May 16;497(7449):374-7. doi: 10.1038/nature12116.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Photon Science and Synchrotron Radiation, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23676755" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; Cell Movement ; Endoderm/embryology ; Gastrulation/*physiology ; Head/embryology ; Imaging, Three-Dimensional/instrumentation/methods ; Mesoderm/embryology ; Morphogenesis ; Movement ; Rotation ; Time Factors ; X-Ray Microtomography/instrumentation/*methods ; Xenopus laevis/anatomy & histology/*embryology
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  • 82
    Publication Date: 2013-10-25
    Description: Globally, reef-building corals are the most prolific producers of dimethylsulphoniopropionate (DMSP), a central molecule in the marine sulphur cycle and precursor of the climate-active gas dimethylsulphide. At present, DMSP production by corals is attributed entirely to their algal endosymbiont, Symbiodinium. Combining chemical, genomic and molecular approaches, we show that coral juveniles produce DMSP in the absence of algal symbionts. DMSP levels increased up to 54% over time in newly settled coral juveniles lacking algal endosymbionts, and further increases, up to 76%, were recorded when juveniles were subjected to thermal stress. We uncovered coral orthologues of two algal genes recently identified in DMSP biosynthesis, strongly indicating that corals possess the enzymatic machinery necessary for DMSP production. Our results overturn the paradigm that photosynthetic organisms are the sole biological source of DMSP, and highlight the double jeopardy represented by worldwide declining coral cover, as the potential to alleviate thermal stress through coral-produced DMSP declines correspondingly.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Raina, Jean-Baptiste -- Tapiolas, Dianne M -- Foret, Sylvain -- Lutz, Adrian -- Abrego, David -- Ceh, Janja -- Seneca, Francois O -- Clode, Peta L -- Bourne, David G -- Willis, Bette L -- Motti, Cherie A -- England -- Nature. 2013 Oct 31;502(7473):677-80. doi: 10.1038/nature12677. Epub 2013 Oct 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] AIMS@JCU, and School of Marine and Tropical Biology, James Cook University, Townsville, Queensland 4811, Australia [2] Australian Institute of Marine Science, PMB3, Townsville MC, Townsville, Queensland 4810, Australia [3] ARC Centre of Excellence for Coral Reef Studies, School of Marine and Tropical Biology, James Cook University, Townsville, Queensland 4811, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24153189" target="_blank"〉PubMed〈/a〉
    Keywords: Acrylates/analysis/metabolism ; Algal Proteins/genetics ; Animals ; Anthozoa/genetics/metabolism/*physiology ; Climate Change ; Photosynthesis ; Secondary Metabolism ; *Stress, Physiological ; Sulfonium Compounds/*metabolism ; Symbiosis ; *Temperature ; Time Factors
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  • 83
    Publication Date: 2013-09-03
    Description: Despite the continued increase in atmospheric greenhouse gas concentrations, the annual-mean global temperature has not risen in the twenty-first century, challenging the prevailing view that anthropogenic forcing causes climate warming. Various mechanisms have been proposed for this hiatus in global warming, but their relative importance has not been quantified, hampering observational estimates of climate sensitivity. Here we show that accounting for recent cooling in the eastern equatorial Pacific reconciles climate simulations and observations. We present a novel method of uncovering mechanisms for global temperature change by prescribing, in addition to radiative forcing, the observed history of sea surface temperature over the central to eastern tropical Pacific in a climate model. Although the surface temperature prescription is limited to only 8.2% of the global surface, our model reproduces the annual-mean global temperature remarkably well with correlation coefficient r = 0.97 for 1970-2012 (which includes the current hiatus and a period of accelerated global warming). Moreover, our simulation captures major seasonal and regional characteristics of the hiatus, including the intensified Walker circulation, the winter cooling in northwestern North America and the prolonged drought in the southern USA. Our results show that the current hiatus is part of natural climate variability, tied specifically to a La-Nina-like decadal cooling. Although similar decadal hiatus events may occur in the future, the multi-decadal warming trend is very likely to continue with greenhouse gas increase.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kosaka, Yu -- Xie, Shang-Ping -- England -- Nature. 2013 Sep 19;501(7467):403-7. doi: 10.1038/nature12534. Epub 2013 Aug 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Scripps Institution of Oceanography, University of California, San Diego, 9500 Gilman Drive MC 206, La Jolla, California 92093-0206, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23995690" target="_blank"〉PubMed〈/a〉
    Keywords: *Climate ; Global Warming/history/*statistics & numerical data ; Greenhouse Effect/history/statistics & numerical data ; History, 20th Century ; History, 21st Century ; *Models, Theoretical ; Pacific Ocean ; Seasons ; *Seawater/analysis ; *Temperature ; Time Factors
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  • 84
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-05-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dolgin, Elie -- England -- Nature. 2013 May 23;497(7450):S6-7. doi: 10.1038/497S6a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23698507" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials as Topic ; Cognition/physiology ; Gene Expression Profiling ; Humans ; Inflammation/immunology/physiopathology ; Interleukin-6/immunology ; Monitoring, Physiologic ; Proto-Oncogene Proteins c-akt/metabolism ; Sleep Deprivation/drug therapy/genetics/immunology/*physiopathology ; Time Factors ; Transcriptome/genetics
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  • 85
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2013-10-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hofmann, Gretchen E -- England -- Nature. 2013 Oct 24;502(7472):431-2.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24159622" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antarctic Regions ; Climate Change ; Ecology/economics/manpower/trends ; Expeditions/*economics/statistics & numerical data/trends ; *Federal Government ; Female ; Hydrogen-Ion Concentration ; Oceanography/economics/manpower/trends ; *Politics ; Research/*economics/manpower/organization & administration/*trends ; Research Personnel/*economics ; Research Support as Topic/*economics ; Seals, Earless/physiology ; Seawater ; Time Factors ; United States
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  • 86
    Publication Date: 2013-02-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sutton, Mark A -- Bleeker, Albert -- England -- Nature. 2013 Feb 28;494(7438):435-7. doi: 10.1038/nature11954. Epub 2013 Feb 20.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23426258" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollutants/*analysis ; Air Pollution/*analysis ; Animals ; *Ecosystem ; Environmental Monitoring/*statistics & numerical data ; Humans ; Nitrogen/*analysis
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  • 87
    Publication Date: 2013-08-24
    Description: Mutualistic networks are formed when the interactions between two classes of species are mutually beneficial. They are important examples of cooperation shaped by evolution. Mutualism between animals and plants has a key role in the organization of ecological communities. Such networks in ecology have generally evolved a nested architecture independent of species composition and latitude; specialist species, with only few mutualistic links, tend to interact with a proper subset of the many mutualistic partners of any of the generalist species. Despite sustained efforts to explain observed network structure on the basis of community-level stability or persistence, such correlative studies have reached minimal consensus. Here we show that nested interaction networks could emerge as a consequence of an optimization principle aimed at maximizing the species abundance in mutualistic communities. Using analytical and numerical approaches, we show that because of the mutualistic interactions, an increase in abundance of a given species results in a corresponding increase in the total number of individuals in the community, and also an increase in the nestedness of the interaction matrix. Indeed, the species abundances and the nestedness of the interaction matrix are correlated by a factor that depends on the strength of the mutualistic interactions. Nestedness and the observed spontaneous emergence of generalist and specialist species occur for several dynamical implementations of the variational principle under stationary conditions. Optimized networks, although remaining stable, tend to be less resilient than their counterparts with randomly assigned interactions. In particular, we show analytically that the abundance of the rarest species is linked directly to the resilience of the community. Our work provides a unifying framework for studying the emergent structural and dynamical properties of ecological mutualistic networks.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Suweis, Samir -- Simini, Filippo -- Banavar, Jayanth R -- Maritan, Amos -- England -- Nature. 2013 Aug 22;500(7463):449-52. doi: 10.1038/nature12438.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Dipartimento di Fisica e Astronomia G. Galilei & CNISM, INFN, Universita di Padova, Via Marzolo 8, 35131 Padova, Italy. suweis@pd.infn.it〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23969462" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Animals ; *Biological Evolution ; Biota ; *Ecosystem ; *Models, Biological ; Plant Physiological Phenomena ; Species Specificity ; *Symbiosis
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  • 88
    Publication Date: 2013-03-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Swan, Alma -- Cockerill, Matthew -- Sipp, Douglas -- England -- Nature. 2013 Mar 28;495(7442):442-3. doi: 10.1038/495442a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23538813" target="_blank"〉PubMed〈/a〉
    Keywords: Access to Information/*legislation & jurisprudence ; *Consumer Advocacy ; Costs and Cost Analysis ; Internet/utilization ; Public Policy ; Public Sector/*economics ; Publishing/*economics/trends ; *Research/economics ; Time Factors ; Translating
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  • 89
    Publication Date: 2013-11-22
    Description: Genetically identical cells sharing an environment can display markedly different phenotypes. It is often unclear how much of this variation derives from chance, external signals, or attempts by individual cells to exert autonomous phenotypic programs. By observing thousands of cells for hundreds of consecutive generations under constant conditions, we dissect the stochastic decision between a solitary, motile state and a chained, sessile state in Bacillus subtilis. We show that the motile state is 'memoryless', exhibiting no autonomous control over the time spent in the state. In contrast, the time spent as connected chains of cells is tightly controlled, enforcing coordination among related cells in the multicellular state. We show that the three-protein regulatory circuit governing the decision is modular, as initiation and maintenance of chaining are genetically separable functions. As stimulation of the same initiating pathway triggers biofilm formation, we argue that autonomous timing allows a trial commitment to multicellularity that external signals could extend.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019345/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019345/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Norman, Thomas M -- Lord, Nathan D -- Paulsson, Johan -- Losick, Richard -- GM081563/GM/NIGMS NIH HHS/ -- GM18568/GM/NIGMS NIH HHS/ -- R01 GM018568/GM/NIGMS NIH HHS/ -- R01 GM081563/GM/NIGMS NIH HHS/ -- England -- Nature. 2013 Nov 28;503(7477):481-6. doi: 10.1038/nature12804. Epub 2013 Nov 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA [2].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24256735" target="_blank"〉PubMed〈/a〉
    Keywords: Bacillus subtilis/*cytology/genetics/*physiology ; Models, Biological ; Movement ; Phenotype ; Stochastic Processes ; Time Factors
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  • 90
    Publication Date: 2013-11-22
    Description: Returning native species to habitats degraded by biological invasions is a critical conservation goal. A leading hypothesis poses that exotic plant dominance is self-reinforced by impacts on ecosystem processes, leading to persistent stable states. Invaders have been documented to modify fire regimes, alter soil nutrients or shift microbial communities in ways that feed back to benefit themselves over competitors. However, few studies have followed invasions through time to ask whether ecosystem impacts and feedbacks persist. Here we return to woodland sites in Hawai'i Volcanoes National Park that were invaded by exotic C4 grasses in the 1960s, the ecosystem impacts of which were studied intensively in the 1990s. We show that positive feedbacks between exotic grasses and soil nitrogen cycling have broken down, but rather than facilitating native vegetation, the weakening feedbacks facilitate new exotic species. Data from the 1990s showed that exotic grasses increased nitrogen-mineralization rates by two- to fourfold, but were nitrogen-limited. Thus, the impacts of the invader created a positive feedback early in the invasion. We now show that annual net soil nitrogen mineralization has since dropped to pre-invasion levels. In addition, a seedling outplanting experiment that varied soil nitrogen and grass competition demonstrates that the changing impacts of grasses do not favour native species re-establishment. Instead, decreased nitrogen availability most benefits another aggressive invader, the nitrogen-fixing tree Morella faya. Long-term studies of invasions may reveal that ecosystem impacts and feedbacks shift over time, but that this may not benefit native species recovery.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yelenik, Stephanie G -- D'Antonio, Carla M -- England -- Nature. 2013 Nov 28;503(7477):517-20. doi: 10.1038/nature12798. Epub 2013 Nov 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California 93106, USA [2] US Geological Survey, Pacific Island Ecosystems Research Center, Hawai'i Volcanoes National Park, Hawai'i 96718, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24256723" target="_blank"〉PubMed〈/a〉
    Keywords: Biomass ; *Ecosystem ; Feedback, Physiological ; Fires ; Hawaii ; *Introduced Species ; Nitrogen/metabolism ; Nitrogen Fixation ; Poaceae/growth & development/metabolism/*physiology ; Seedlings/growth & development ; Soil/chemistry ; Species Specificity ; Time Factors ; Volcanic Eruptions
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  • 91
    Publication Date: 2013-09-06
    Description: Cognitive control is defined by a set of neural processes that allow us to interact with our complex environment in a goal-directed manner. Humans regularly challenge these control processes when attempting to simultaneously accomplish multiple goals (multitasking), generating interference as the result of fundamental information processing limitations. It is clear that multitasking behaviour has become ubiquitous in today's technologically dense world, and substantial evidence has accrued regarding multitasking difficulties and cognitive control deficits in our ageing population. Here we show that multitasking performance, as assessed with a custom-designed three-dimensional video game (NeuroRacer), exhibits a linear age-related decline from 20 to 79 years of age. By playing an adaptive version of NeuroRacer in multitasking training mode, older adults (60 to 85 years old) reduced multitasking costs compared to both an active control group and a no-contact control group, attaining levels beyond those achieved by untrained 20-year-old participants, with gains persisting for 6 months. Furthermore, age-related deficits in neural signatures of cognitive control, as measured with electroencephalography, were remediated by multitasking training (enhanced midline frontal theta power and frontal-posterior theta coherence). Critically, this training resulted in performance benefits that extended to untrained cognitive control abilities (enhanced sustained attention and working memory), with an increase in midline frontal theta power predicting the training-induced boost in sustained attention and preservation of multitasking improvement 6 months later. These findings highlight the robust plasticity of the prefrontal cognitive control system in the ageing brain, and provide the first evidence, to our knowledge, of how a custom-designed video game can be used to assess cognitive abilities across the lifespan, evaluate underlying neural mechanisms, and serve as a powerful tool for cognitive enhancement.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983066/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983066/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Anguera, J A -- Boccanfuso, J -- Rintoul, J L -- Al-Hashimi, O -- Faraji, F -- Janowich, J -- Kong, E -- Larraburo, Y -- Rolle, C -- Johnston, E -- Gazzaley, A -- L30 AG040556/AG/NIA NIH HHS/ -- R01 AG040333/AG/NIA NIH HHS/ -- T32 GM008155/GM/NIGMS NIH HHS/ -- England -- Nature. 2013 Sep 5;501(7465):97-101. doi: 10.1038/nature12486.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurology, University of California, San Francisco, California 94158, USA. joaquin.anguera@ucsf.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24005416" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Aged ; Aged, 80 and over ; Aging/physiology ; Automobile Driving/psychology ; Biomedical Enhancement ; Brain/physiology ; Cognition/*physiology ; Electroencephalography ; Humans ; Male ; Memory, Short-Term/physiology ; Middle Aged ; Neuropsychological Tests ; Psychomotor Performance ; Theta Rhythm ; Time Factors ; *Video Games ; Young Adult
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  • 92
    Publication Date: 2013-03-15
    Description: In mammals, sex differentiation of primordial germ cells (PGCs) is determined by extrinsic cues from the environment. In mouse female PGCs, expression of stimulated by retinoic acid gene 8 (Stra8) and meiosis are induced in response to retinoic acid provided from the mesonephroi. Given the widespread role of retinoic acid signalling during development, the molecular mechanisms that enable PGCs to express Stra8 and enter meiosis in a timely manner are unknown. Here we identify gene-dosage-dependent roles in PGC development for Ring1 and Rnf2, two central components of the Polycomb repressive complex 1 (PRC1). Both paralogues are essential for PGC development between days 10.5 and 11.5 of gestation. Rnf2 is subsequently required in female PGCs to maintain high levels of Oct4 (also known as Pou5f1) and Nanog expression, and to prevent premature induction of meiotic gene expression and entry into meiotic prophase. Chemical inhibition of retinoic acid signalling partially suppresses precocious Oct4 downregulation and Stra8 activation in Rnf2-deficient female PGCs. Chromatin immunoprecipitation analyses show that Stra8 is a direct target of PRC1 and PRC2 in PGCs. These data demonstrate the importance of PRC1 gene dosage in PGC development and in coordinating the timing of sex differentiation of female PGCs by antagonizing extrinsic retinoic acid signalling.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yokobayashi, Shihori -- Liang, Ching-Yeu -- Kohler, Hubertus -- Nestorov, Peter -- Liu, Zichuan -- Vidal, Miguel -- van Lohuizen, Maarten -- Roloff, Tim C -- Peters, Antoine H F M -- England -- Nature. 2013 Mar 14;495(7440):236-40. doi: 10.1038/nature11918.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23486062" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptor Proteins, Signal Transducing ; Animals ; Chromatin/genetics/metabolism ; Down-Regulation ; Female ; Gene Expression Regulation, Developmental ; Homeodomain Proteins/metabolism ; Male ; Meiosis ; Mice ; Octamer Transcription Factor-3/genetics/metabolism ; Ovum/*cytology/*metabolism ; Polycomb Repressive Complex 1/deficiency/*metabolism ; Polycomb Repressive Complex 2/metabolism ; Proteins/genetics ; Sex Characteristics ; Sex Differentiation/*physiology ; Signal Transduction ; Time Factors ; Transcription, Genetic ; Tretinoin/metabolism ; Ubiquitin-Protein Ligases/deficiency/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 93
    Publication Date: 2013-03-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pais, Miguel Pessanha -- England -- Nature. 2013 Mar 14;495(7440):174. doi: 10.1038/495174d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23486052" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conservation of Natural Resources/*methods ; *Ecosystem ; Fisheries/*statistics & numerical data ; Fishes/*physiology
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 94
    Publication Date: 2013-09-21
    Description: Recent therapeutic advances in oncology have been driven by the identification of tumour genotype variations between patients, called interpatient heterogeneity, that predict the response of patients to targeted treatments. Subpopulations of cancer cells with unique genomes in the same patient may exist across different geographical regions of a tumour or evolve over time, called intratumour heterogeneity. Sequencing technologies can be used to characterize intratumour heterogeneity at diagnosis, monitor clonal dynamics during treatment and identify the emergence of clinical resistance during disease progression. Genetic interpatient and intratumour heterogeneity can pose challenges for the design of clinical trials that use these data.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bedard, Philippe L -- Hansen, Aaron R -- Ratain, Mark J -- Siu, Lillian L -- U01 GM061393/GM/NIGMS NIH HHS/ -- U01 GM61393/GM/NIGMS NIH HHS/ -- England -- Nature. 2013 Sep 19;501(7467):355-64. doi: 10.1038/nature12627.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Princess Margaret Cancer Centre, University Health Network, Division of Medical Oncology and Hematology, Toronto, Ontario, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24048068" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials as Topic/*methods ; Clonal Evolution/genetics ; Gene Expression Profiling/methods ; Humans ; Longitudinal Studies/methods ; Neoplasm Metastasis/pathology ; Neoplasms/diagnosis/genetics/*pathology/*therapy ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 95
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    Nature Publishing Group (NPG)
    Publication Date: 2013-06-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sawyers, Charles L -- England -- Nature. 2013 Jun 27;498(7455):S7. doi: 10.1038/498S7a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23803949" target="_blank"〉PubMed〈/a〉
    Keywords: Antineoplastic Agents/pharmacology/therapeutic use ; Benzamides/administration & dosage/pharmacology/therapeutic use ; Drug Resistance, Multiple/drug effects ; Drug Resistance, Neoplasm/drug effects ; *Drug Therapy, Combination/economics ; Humans ; Imatinib Mesylate ; Leukemia, Myelogenous, Chronic, BCR-ABL Positive/*drug therapy/economics/genetics ; Oncogene Proteins v-abl/antagonists & inhibitors/genetics ; Piperazines/administration & dosage/pharmacology/therapeutic use ; Protein Kinase Inhibitors/administration & dosage/pharmacology/therapeutic use ; Pyrimidines/administration & dosage/pharmacology/therapeutic use ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 96
    Publication Date: 2013-02-08
    Description: Long-term and persistent human disturbances have simultaneously altered the stability and diversity of ecological systems, with disturbances directly reducing functional attributes such as invasion resistance, while eliminating the buffering effects of high species diversity. Theory predicts that this combination of environmental change and diversity loss increases the risk of abrupt and potentially irreversible ecosystem collapse, but long-term empirical evidence from natural systems is lacking. Here we demonstrate this relationship in a degraded but species-rich pyrogenic grassland in which the combined effects of fire suppression, invasion and trophic collapse have created a species-poor grassland that is highly productive, resilient to yearly climatic fluctuations, and resistant to invasion, but vulnerable to rapid collapse after the re-introduction of fire. We initially show how human disturbance has created a negative relationship between diversity and function, contrary to theoretical predictions. Fire prevention since the mid-nineteenth century is associated with the loss of plant species but it has stabilized high-yield annual production and invasion resistance, comparable to a managed high-yield low-diversity agricultural system. In managing for fire suppression, however, a hidden vulnerability to sudden environmental change emerges that is explained by the elimination of the buffering effects of high species diversity. With the re-introduction of fire, grasslands only persist in areas with remnant concentrations of native species, in which a range of rare and mostly functionally redundant plants proliferate after burning and prevent extensive invasion including a rapid conversion towards woodland. This research shows how biodiversity can be crucial for ecosystem stability despite appearing functionally insignificant beforehand, a relationship probably applicable to many ecosystems given the globally prevalent combination of intensive long-term land management and species loss.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacDougall, A S -- McCann, K S -- Gellner, G -- Turkington, R -- England -- Nature. 2013 Feb 7;494(7435):86-9. doi: 10.1038/nature11869.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada. amacdo02@uoguelph.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23389543" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Biomass ; Climate Change ; Ecology/methods ; *Ecosystem ; Fires ; *Human Activities ; Introduced Species ; Poaceae/growth & development ; Population Dynamics ; Trees/growth & development
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 97
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    Nature Publishing Group (NPG)
    Publication Date: 2013-10-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Flight, Monica Hoyos -- England -- Nature. 2013 Oct 17;502(7471):S50-2. doi: 10.1038/502S50a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24132331" target="_blank"〉PubMed〈/a〉
    Keywords: Adrenergic Agonists/chemistry/pharmacology ; Animals ; *Drug Design ; Humans ; Ligands ; Nobel Prize ; Receptors, Adrenergic/chemistry/metabolism ; Receptors, G-Protein-Coupled/agonists/*chemistry/genetics/metabolism ; Signal Transduction/drug effects ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 98
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    Nature Publishing Group (NPG)
    Publication Date: 2013-09-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Grinnell, Frederick -- England -- Nature. 2013 Sep 12;501(7466):137. doi: 10.1038/501137a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, USA. frederick.grinnell@utsouthwestern.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24025803" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/*economics/standards ; Budgets/legislation & jurisprudence ; Efficiency ; *Federal Government ; Financing, Organized/economics/*methods/standards/statistics & numerical data ; Humans ; Journal Impact Factor ; National Institutes of Health (U.S.)/economics/legislation & jurisprudence ; Research Personnel/economics ; Research Support as Topic/economics/legislation & jurisprudence/*methods ; Salaries and Fringe Benefits/economics ; Time Factors ; United States
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  • 99
    Publication Date: 2013-10-29
    Description: Circadian oscillation of body temperature is a basic, evolutionarily conserved feature of mammalian biology. In addition, homeostatic pathways allow organisms to protect their core temperatures in response to cold exposure. However, the mechanism responsible for coordinating daily body temperature rhythm and adaptability to environmental challenges is unknown. Here we show that the nuclear receptor Rev-erbalpha (also known as Nr1d1), a powerful transcriptional repressor, links circadian and thermogenic networks through the regulation of brown adipose tissue (BAT) function. Mice exposed to cold fare considerably better at 05:00 (Zeitgeber time 22) when Rev-erbalpha is barely expressed than at 17:00 (Zeitgeber time 10) when Rev-erbalpha is abundant. Deletion of Rev-erbalpha markedly improves cold tolerance at 17:00, indicating that overcoming Rev-erbalpha-dependent repression is a fundamental feature of the thermogenic response to cold. Physiological induction of uncoupling protein 1 (Ucp1) by cold temperatures is preceded by rapid downregulation of Rev-erbalpha in BAT. Rev-erbalpha represses Ucp1 in a brown-adipose-cell-autonomous manner and BAT Ucp1 levels are high in Rev-erbalpha-null mice, even at thermoneutrality. Genetic loss of Rev-erbalpha also abolishes normal rhythms of body temperature and BAT activity. Thus, Rev-erbalpha acts as a thermogenic focal point required for establishing and maintaining body temperature rhythm in a manner that is adaptable to environmental demands.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839416/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839416/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gerhart-Hines, Zachary -- Feng, Dan -- Emmett, Matthew J -- Everett, Logan J -- Loro, Emanuele -- Briggs, Erika R -- Bugge, Anne -- Hou, Catherine -- Ferrara, Christine -- Seale, Patrick -- Pryma, Daniel A -- Khurana, Tejvir S -- Lazar, Mitchell A -- F-32 DK095563/DK/NIDDK NIH HHS/ -- F32 DK095526/DK/NIDDK NIH HHS/ -- P30 DK019525/DK/NIDDK NIH HHS/ -- P30 DK19525/DK/NIDDK NIH HHS/ -- R01 DK045586/DK/NIDDK NIH HHS/ -- R01 DK45586/DK/NIDDK NIH HHS/ -- U19 DK062434/DK/NIDDK NIH HHS/ -- England -- Nature. 2013 Nov 21;503(7476):410-3. doi: 10.1038/nature12642. Epub 2013 Oct 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Department of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA [2] The Institute for Diabetes, Obesity, and Metabolism, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24162845" target="_blank"〉PubMed〈/a〉
    Keywords: Acclimatization/genetics/physiology ; Adipose Tissue, Brown/metabolism ; Animals ; Body Temperature Regulation/genetics/*physiology ; Circadian Rhythm/genetics/*physiology ; Cold Temperature ; Down-Regulation ; Ion Channels/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mitochondrial Proteins/metabolism ; Nuclear Receptor Subfamily 1, Group D, Member 1/deficiency/genetics/*metabolism ; Thermogenesis/genetics/physiology ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 100
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    Nature Publishing Group (NPG)
    Publication Date: 2013-08-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2013 Aug 29;500(7464):501.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23991448" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Carbon Dioxide/analysis ; El Nino-Southern Oscillation ; *Environmental Policy ; Global Warming/*statistics & numerical data ; *Hot Temperature ; Models, Theoretical ; Pacific Ocean ; *Policy Making ; Risk Management ; Seawater/chemistry ; Time Factors ; Tropical Climate
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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