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  • Mutation  (162)
  • American Association for the Advancement of Science (AAAS)  (162)
  • American Association of Petroleum Geologists (AAPG)
  • American Institute of Physics (AIP)
  • 2000-2004  (162)
  • 2002  (162)
Collection
Publisher
  • American Association for the Advancement of Science (AAAS)  (162)
  • American Association of Petroleum Geologists (AAPG)
  • American Institute of Physics (AIP)
Years
  • 2000-2004  (162)
Year
  • 1
    Publication Date: 2002-04-06
    Description: Higher order chromatin structure presents a barrier to the recognition and repair of DNA damage. Double-strand breaks (DSBs) induce histone H2AX phosphorylation, which is associated with the recruitment of repair factors to damaged DNA. To help clarify the physiological role of H2AX, we targeted H2AX in mice. Although H2AX is not essential for irradiation-induced cell-cycle checkpoints, H2AX-/- mice were radiation sensitive, growth retarded, and immune deficient, and mutant males were infertile. These pleiotropic phenotypes were associated with chromosomal instability, repair defects, and impaired recruitment of Nbs1, 53bp1, and Brca1, but not Rad51, to irradiation-induced foci. Thus, H2AX is critical for facilitating the assembly of specific DNA-repair complexes on damaged DNA.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4721576/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4721576/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Celeste, Arkady -- Petersen, Simone -- Romanienko, Peter J -- Fernandez-Capetillo, Oscar -- Chen, Hua Tang -- Sedelnikova, Olga A -- Reina-San-Martin, Bernardo -- Coppola, Vincenzo -- Meffre, Eric -- Difilippantonio, Michael J -- Redon, Christophe -- Pilch, Duane R -- Olaru, Alexandru -- Eckhaus, Michael -- Camerini-Otero, R Daniel -- Tessarollo, Lino -- Livak, Ferenc -- Manova, Katia -- Bonner, William M -- Nussenzweig, Michel C -- Nussenzweig, Andre -- Z99 CA999999/Intramural NIH HHS/ -- New York, N.Y. -- Science. 2002 May 3;296(5569):922-7. Epub 2002 Apr 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Experimental Immunology Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11934988" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; B-Lymphocytes/immunology/physiology ; Base Sequence ; Cell Aging ; Cell Cycle ; Cells, Cultured ; *Chromosome Aberrations ; DNA Damage ; *DNA Repair ; Female ; Gene Targeting ; Histones/chemistry/*genetics/*physiology ; Immunoglobulin Class Switching ; Infertility, Male/genetics/physiopathology ; Lymphocyte Count ; Male ; Meiosis ; Mice ; Mice, Knockout ; Molecular Sequence Data ; Mutation ; Phosphorylation ; *Recombination, Genetic ; Spermatocytes/physiology ; T-Lymphocytes/immunology/physiology
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    Electronic ISSN: 1095-9203
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  • 2
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-08-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lynch, Michael -- New York, N.Y. -- Science. 2002 Aug 9;297(5583):945-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Indiana University, Bloomington, IN 47405, USA. mlynch@bio.indiana.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12169715" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Caenorhabditis elegans/genetics ; Chromosomes/genetics ; Chromosomes, Human/genetics ; *Gene Duplication ; Gene Rearrangement ; Gene Silencing ; *Genes, Duplicate ; *Genome, Human ; Genomics ; Humans ; Mutation ; Selection, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
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  • 3
    Publication Date: 2002-06-22
    Description: Positive-strand RNA viruses such as poliovirus replicate their genomes on intracellular membranes of their eukaryotic hosts. Electron microscopy has revealed that purified poliovirus RNA-dependent RNA polymerase forms planar and tubular oligomeric arrays. The structural integrity of these arrays correlates with cooperative RNA binding and RNA elongation and is sensitive to mutations that disrupt intermolecular contacts predicted by the polymerase structure. Membranous vesicles isolated from poliovirus-infected cells contain structures consistent with the presence of two-dimensional polymerase arrays on their surfaces during infection. Therefore, host cytoplasmic membranes may function as physical foundations for two-dimensional polymerase arrays, conferring the advantages of surface catalysis to viral RNA replication.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lyle, John M -- Bullitt, Esther -- Bienz, Kurt -- Kirkegaard, Karla -- AI-42119/AI/NIAID NIH HHS/ -- New York, N.Y. -- Science. 2002 Jun 21;296(5576):2218-22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12077417" target="_blank"〉PubMed〈/a〉
    Keywords: Base Sequence ; Binding Sites ; Catalysis ; Crystallography, X-Ray ; HeLa Cells ; Humans ; Hydrogen-Ion Concentration ; Inclusion Bodies, Viral/metabolism/ultrastructure ; Microscopy, Electron ; Models, Molecular ; Molecular Sequence Data ; Mutation ; Nucleic Acid Conformation ; Poliovirus/*enzymology/physiology ; Protein Conformation ; Protein Structure, Quaternary ; Protein Structure, Tertiary ; RNA Replicase/*chemistry/isolation & purification/*metabolism/ultrastructure ; RNA, Viral/biosynthesis/*metabolism ; Viral Core Proteins/metabolism ; Virus Replication
    Print ISSN: 0036-8075
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  • 4
    Publication Date: 2002-05-04
    Description: There is a relation between stress and alcohol drinking. We show that the corticotropin-releasing hormone (CRH) system that mediates endocrine and behavioral responses to stress plays a role in the control of long-term alcohol drinking. In mice lacking a functional CRH1 receptor, stress leads to enhanced and progressively increasing alcohol intake. The effect of repeated stress on alcohol drinking behavior appeared with a delay and persisted throughout life. It was associated with an up-regulation of the N-methyl-d-aspartate receptor subunit NR2B. Alterations in the CRH1 receptor gene and adaptional changes in NR2B subunits may constitute a genetic risk factor for stress-induced alcohol drinking and alcoholism.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sillaber, Inge -- Rammes, Gerhard -- Zimmermann, Stephan -- Mahal, Beatrice -- Zieglgansberger, Walter -- Wurst, Wolfgang -- Holsboer, Florian -- Spanagel, Rainer -- New York, N.Y. -- Science. 2002 May 3;296(5569):931-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute of Psychiatry, Kraepelinstrasse 2-10, 80804 Munich, Germany. sillaber@mpipsykl.mpg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11988580" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; *Alcohol Drinking ; Alcoholism/*etiology/genetics ; Animals ; Brain/metabolism ; Corticotropin-Releasing Hormone/physiology ; Ethanol/blood ; Female ; Hippocampus/physiology ; In Vitro Techniques ; Male ; Mice ; Mice, Knockout ; Models, Animal ; Mutation ; Receptors, AMPA/metabolism ; Receptors, Corticotropin-Releasing Hormone/*genetics/*physiology ; Receptors, Kainic Acid/metabolism ; Receptors, N-Methyl-D-Aspartate/*metabolism ; Signal Transduction ; Stress, Physiological/physiopathology ; Stress, Psychological/*physiopathology ; Up-Regulation
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marshall, Eliot -- New York, N.Y. -- Science. 2002 May 17;296(5571):1218.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12016281" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arabidopsis/anatomy & histology/*genetics/growth & development/*physiology ; Arabidopsis Proteins/genetics/*physiology ; Biological Evolution ; Drosophila/anatomy & histology/genetics/growth & development/physiology ; Drosophila Proteins/genetics/physiology ; Genes, Insect ; Genes, Plant ; HSP90 Heat-Shock Proteins/genetics/*physiology ; Mutation ; Plant Leaves/anatomy & histology
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2002-02-09
    Description: Double-stranded RNA-mediated gene interference (RNAi) in Caenorhabditis elegans systemically inhibits gene expression throughout the organism. To investigate how gene-specific silencing information is transmitted between cells, we constructed a strain that permits visualization of systemic RNAi. We used this strain to identify systemic RNA interference-deficient (sid) loci required to spread gene-silencing information between tissues but not to initiate or maintain an RNAi response. One of these loci, sid-1, encodes a conserved protein with predicted transmembrane domains. SID-1 is expressed in cells sensitive to RNAi, is localized to the cell periphery, and is required cell-autonomously for systemic RNAi.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Winston, William M -- Molodowitch, Christina -- Hunter, Craig P -- New York, N.Y. -- Science. 2002 Mar 29;295(5564):2456-9. Epub 2002 Feb 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11834782" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Animals, Genetically Modified ; Caenorhabditis elegans/embryology/*genetics/metabolism ; Caenorhabditis elegans Proteins/chemistry/*genetics/*physiology ; Calmodulin-Binding Proteins/genetics ; Cytoplasm/metabolism ; Embryo, Nonmammalian/physiology ; *Gene Silencing ; Genes, Helminth ; Germ Cells/metabolism ; Green Fluorescent Proteins ; Intestines/metabolism ; Luminescent Proteins/genetics ; Membrane Proteins/chemistry/*genetics/*physiology ; Molecular Sequence Data ; Mosaicism ; Muscle Proteins/genetics ; Muscles/metabolism ; Mutation ; Protein Structure, Tertiary ; RNA, Double-Stranded/*genetics/metabolism ; RNA, Helminth/*genetics/metabolism ; Recombinant Fusion Proteins/metabolism ; Transgenes
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  • 7
    Publication Date: 2002-12-10
    Description: The formation and patterning of mesoderm during mammalian gastrulation require the activity of Nodal, a secreted mesoderm-inducing factor of the transforming growth factor-beta (TGF-beta) family. Here we show that the transcriptional corepressor DRAP1 has a very specific role in regulation of Nodal activity during mouse embryogenesis. We find that loss of Drap1 leads to severe gastrulation defects that are consistent with increased expression of Nodal and can be partially suppressed by Nodal heterozygosity. Biochemical studies indicate that DRAP1 interacts with and inhibits DNA binding by the winged-helix transcription factor FoxH1 (FAST), a critical component of a positive feedback loop for Nodal activity. We propose that DRAP1 limits the spread of a morphogenetic signal by down-modulating the response to the Nodal autoregulatory loop.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Iratni, Rabah -- Yan, Yu-Ting -- Chen, Canhe -- Ding, Jixiang -- Zhang, Yi -- Price, Sandy M -- Reinberg, Danny -- Shen, Michael M -- New York, N.Y. -- Science. 2002 Dec 6;298(5600):1996-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Department of Biochemistry, Division of Nucleic Acids Enzymology, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12471260" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Cell Line ; Crosses, Genetic ; DNA/metabolism ; DNA-Binding Proteins/metabolism ; *Embryonic and Fetal Development ; Female ; Forkhead Transcription Factors ; Gastrula/*physiology ; Gene Expression Regulation, Developmental ; Gene Targeting ; Heterozygote ; In Situ Hybridization ; Left-Right Determination Factors ; Male ; Mesoderm/cytology/physiology ; Mice ; Morphogenesis ; Mutation ; Nodal Protein ; Phenotype ; Protein Binding ; RNA Interference ; Recombinant Fusion Proteins/metabolism ; Repressor Proteins/genetics/*metabolism ; Reverse Transcriptase Polymerase Chain Reaction ; *Signal Transduction ; Transcription Factors/metabolism ; Transforming Growth Factor beta/genetics/*metabolism
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  • 8
    Publication Date: 2002-04-27
    Description: Little is known of how plant disease resistance (R) proteins recognize pathogens and activate plant defenses. Rcr3 is specifically required for the function of Cf-2, a Lycopersicon pimpinellifolium gene bred into cultivated tomato (Lycopersicon esculentum) for resistance to Cladosporium fulvum. Rcr3 encodes a secreted papain-like cysteine endoprotease. Genetic analysis shows Rcr3 is allelic to the L. pimpinellifolium Ne gene, which suppresses the Cf-2-dependent autonecrosis conditioned by its L. esculentum allele, ne (necrosis). Rcr3 alleles from these two species encode proteins that differ by only seven amino acids. Possible roles of Rcr3 in Cf-2-dependent defense and autonecrosis are discussed.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kruger, Julia -- Thomas, Colwyn M -- Golstein, Catherine -- Dixon, Mark S -- Smoker, Matthew -- Tang, Saijun -- Mulder, Lonneke -- Jones, Jonathan D G -- New York, N.Y. -- Science. 2002 Apr 26;296(5568):744-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Sainsbury Laboratory, John Innes Centre, Norwich NR4 7UH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11976458" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Amino Acid Sequence ; Base Sequence ; Cladosporium/*physiology ; Cloning, Molecular ; Cysteine Endopeptidases/chemistry/*genetics/*metabolism ; Cysteine Proteinase Inhibitors/pharmacology ; Gene Expression Regulation, Plant ; *Genes, Plant ; Immunity, Innate ; Leucine/analogs & derivatives/pharmacology ; Lycopersicon esculentum/*enzymology/genetics/*microbiology/physiology ; Molecular Sequence Data ; Mutation ; Phenotype ; *Plant Diseases ; Plant Leaves/enzymology ; Plant Proteins/*metabolism ; Plants, Genetically Modified ; Promoter Regions, Genetic ; Recombinant Fusion Proteins/chemistry/metabolism ; Tobacco/genetics ; Transgenes
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  • 9
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Garelik, Glenn -- New York, N.Y. -- Science. 2002 Nov 29;298(5599):1702-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12459565" target="_blank"〉PubMed〈/a〉
    Keywords: Cloning, Molecular ; DNA/genetics ; Developed Countries ; Developing Countries ; Drug Resistance, Microbial ; Fungicides, Industrial ; Genes ; Genes, Plant ; Genetic Engineering ; Genome ; Mutation ; *Phytophthora/genetics/pathogenicity/physiology ; *Plant Diseases ; Sequence Analysis, DNA ; Solanum tuberosum/genetics/*microbiology ; Spores/physiology ; Virulence/genetics
    Print ISSN: 0036-8075
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  • 10
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-03
    Description: The gastric pathogen Helicobacter pylori is known to be able to use molecular hydrogen as a respiratory substrate when grown in the laboratory. We found that hydrogen is available in the gastric mucosa of mice and that its use greatly increased the stomach colonization by H. pylori. Hydrogenase activity in H. pylori is constitutive but increased fivefold upon incubation with hydrogen. Hydrogen concentrations measured in the stomachs of live mice were found to be 10 to 50 times as high as the H. pylori affinity for hydrogen. A hydrogenase mutant strain is much less efficient in its colonization of mice. Therefore, hydrogen present in animals as a consequence of normal colonic flora is an energy-yielding substrate that can facilitate the maintenance of a pathogenic bacterium.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olson, Jonathan W -- Maier, Robert J -- New York, N.Y. -- Science. 2002 Nov 29;298(5599):1788-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, University of Georgia, Athens, GA 30602, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12459589" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Catechol 2,3-Dioxygenase ; Colon/metabolism/microbiology ; *Dioxygenases ; Energy Metabolism ; Fermentation ; Gastric Mucosa/*metabolism/*microbiology ; Gene Expression Regulation, Bacterial ; Genes, Reporter ; Helicobacter pylori/growth & development/*metabolism ; Hydrogen/*metabolism ; Hydrogenase/genetics/*metabolism ; Kinetics ; Mice ; Mutation ; Oxidation-Reduction ; Oxygenases/genetics/metabolism ; Transcription, Genetic
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  • 11
    Publication Date: 2002-09-14
    Description: Mutations in the BRCA2 (breast cancer susceptibility gene 2) tumor suppressor lead to chromosomal instability due to defects in the repair of double-strand DNA breaks (DSBs) by homologous recombination, but BRCA2's role in this process has been unclear. Here, we present the 3.1 angstrom crystal structure of a approximately 90-kilodalton BRCA2 domain bound to DSS1, which reveals three oligonucleotide-binding (OB) folds and a helix-turn-helix (HTH) motif. We also (i) demonstrate that this BRCA2 domain binds single-stranded DNA, (ii) present its 3.5 angstrom structure bound to oligo(dT)9, (iii) provide data that implicate the HTH motif in dsDNA binding, and (iv) show that BRCA2 stimulates RAD51-mediated recombination in vitro. These findings establish that BRCA2 functions directly in homologous recombination and provide a structural and biochemical basis for understanding the loss of recombination-mediated DSB repair in BRCA2-associated cancers.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yang, Haijuan -- Jeffrey, Philip D -- Miller, Julie -- Kinnucan, Elspeth -- Sun, Yutong -- Thoma, Nicolas H -- Zheng, Ning -- Chen, Phang-Lang -- Lee, Wen-Hwa -- Pavletich, Nikola P -- New York, N.Y. -- Science. 2002 Sep 13;297(5588):1837-48.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, Sloan-Kettering Division, Joan and Sanford I. Weill Graduate School of Medical Sciences, Cornell University, New York, NY 10021, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12228710" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; BRCA2 Protein/*chemistry/genetics/*metabolism ; Binding Sites ; Crystallography, X-Ray ; DNA/metabolism ; *DNA Repair ; DNA, Single-Stranded/*metabolism ; DNA-Binding Proteins/metabolism ; Genes, BRCA2 ; Helix-Turn-Helix Motifs ; Humans ; Hydrogen Bonding ; Hydrophobic and Hydrophilic Interactions ; Mice ; Molecular Sequence Data ; Mutation ; Proteasome Endopeptidase Complex ; Protein Conformation ; Protein Folding ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Proteins/chemistry/*metabolism ; Rad51 Recombinase ; Rats ; *Recombination, Genetic
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  • 12
    Publication Date: 2002-01-05
    Description: The isoprenylated benzoquinone coenzyme Q is a redox-active lipid essential for electron transport in aerobic respiration. Here, we show that withdrawal of coenzyme Q (Q) from the diet of wild-type nematodes extends adult life-span by approximately 60%. The longevity of clk-1, daf-2, daf-12, and daf-16 mutants is also extended by a Q-less diet. These results establish the importance of Q in life-span determination. The findings suggest that Q and the daf-2 pathway intersect at the mitochondria and imply that a concerted production coupled with enhanced scavenging of reactive oxygen species contributes to the substantial life-span extension.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Larsen, Pamela L -- Clarke, Catherine F -- New York, N.Y. -- Science. 2002 Jan 4;295(5552):120-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and Biochemistry, 607 Charles E. Young Drive East, Box 951569, University of California, Los Angeles, CA 90095, USA. larsen@chem.ucla.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11778046" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Animals ; Caenorhabditis elegans/genetics/growth & development/metabolism/*physiology ; Caenorhabditis elegans Proteins/genetics/metabolism ; Diet ; Escherichia coli/genetics/metabolism ; Fermentation ; Forkhead Transcription Factors ; Genes, Helminth ; Helminth Proteins/genetics/metabolism ; Larva/growth & development/metabolism ; *Longevity ; Mitochondria/metabolism ; Models, Biological ; Mutation ; Oxidation-Reduction ; Oxygen Consumption ; Phenotype ; Reactive Oxygen Species/metabolism ; Receptor, Insulin/genetics/metabolism ; Receptors, Cytoplasmic and Nuclear/genetics/metabolism ; Signal Transduction ; Transcription Factors/genetics/metabolism ; Ubiquinone/administration & dosage/*metabolism
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  • 13
    Publication Date: 2002-05-11
    Description: Aneuploidy (trisomy or monosomy) is the leading genetic cause of pregnancy loss in humans and results from errors in meiotic chromosome segregation. Here, we show that the absence of synaptonemal complex protein 3 (SCP3) promotes aneuploidy in murine oocytes by inducing defective meiotic chromosome segregation. The abnormal oocyte karyotype is inherited by embryos, which die in utero at an early stage of development. In addition, embryo death in SCP3-deficient females increases with advancing maternal age. We found that SCP3 is required for chiasmata formation and for the structural integrity of meiotic chromosomes, suggesting that altered chromosomal structure triggers nondisjunction. SCP3 is thus linked to inherited aneuploidy in female germ cells and provides a model system for studying age-dependent degeneration in oocytes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yuan, Li -- Liu, Jian-Guo -- Hoja, Mary-Rose -- Wilbertz, Johannes -- Nordqvist, Katarina -- Hoog, Christer -- New York, N.Y. -- Science. 2002 May 10;296(5570):1115-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Genomics and Bioinformatics and Department of Cell and Molecular Biology, Karolinska Institutet, SE-171 77 Stockholm, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12004129" target="_blank"〉PubMed〈/a〉
    Keywords: *Aneuploidy ; Animals ; Chromosome Segregation ; Chromosomes/*physiology/ultrastructure ; Crossing Over, Genetic ; *Embryo Loss ; Female ; Karyotyping ; Litter Size ; Male ; Maternal Age ; *Meiosis ; Mice ; Mice, Inbred C57BL ; Mutation ; Nondisjunction, Genetic ; Nuclear Proteins/genetics/*physiology ; Oocytes/*physiology ; Pregnancy ; Recombination, Genetic ; Synaptonemal Complex/physiology/ultrastructure
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  • 14
    Publication Date: 2002-11-26
    Description: The untranslated roX1 and roX2 RNAs are components of the Drosophila male-specific lethal (MSL) complex, which modifies histones to up-regulate transcription of the male X chromosome. roX genes are normally located on the X chromosome, and roX transgenes can misdirect the dosage compensation machinery to spread locally on other chromosomes. Here we define MSL protein abundance as a determinant of whether the MSL complex will spread in cis from an autosomal roX transgene. The number of expressed roX genes in a nucleus was inversely correlated with spreading from roX transgenes. We suggest a model in which MSL proteins assemble into active complexes by binding nascent roX transcripts. When MSL protein/roX RNA ratios are high, assembly will be efficient, and complexes may be completed while still tethered to the DNA template. We propose that this local production of MSL complexes determines the extent of spreading into flanking chromatin.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, Yongkyu -- Kelley, Richard L -- Oh, Hyangyee -- Kuroda, Mitzi I -- Meller, Victoria H -- GM45744/GM/NIGMS NIH HHS/ -- GM58427/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Nov 22;298(5598):1620-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12446910" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Chromatin/*metabolism ; Chromosomes/metabolism ; DNA, Complementary ; DNA-Binding Proteins ; *Dosage Compensation, Genetic ; Drosophila/*genetics/metabolism ; *Drosophila Proteins ; Gene Expression Regulation ; Mutation ; Nuclear Proteins/genetics/*metabolism ; RNA, Messenger/*genetics/metabolism ; RNA, Untranslated/*genetics/metabolism ; Transcription Factors/genetics/*metabolism ; Transcription, Genetic ; Transgenes ; X Chromosome/metabolism
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  • 15
    Publication Date: 2002-06-29
    Description: Despite the importance of selection against deleterious mutations in natural populations, reliable estimates of the genomic numbers of mutant alleles in wild populations are scarce. We found that, in wild-caught bluefin killifish Lucania goodei (Fundulidae) and wild-caught zebrafish Danio rerio (Cyprinidae), the average numbers of recessive lethal alleles per individual are 1.9 (95% confidence limits 1.3 to 2.6) and 1.4 (95% confidence limits 1.0 to 2.0), respectively. These results, together with data on several Drosophila species and on Xenopus laevis, show that phylogenetically distant animals with different genome sizes and numbers of genes carry similar numbers of lethal mutations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McCune, Amy R -- Fuller, Rebecca C -- Aquilina, Allisan A -- Dawley, Robert M -- Fadool, James M -- Houle, David -- Travis, Joseph -- Kondrashov, Alexey S -- New York, N.Y. -- Science. 2002 Jun 28;296(5577):2398-401.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA. arm2@cornell.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12089444" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Crosses, Genetic ; Drosophila/genetics ; Female ; Fundulidae/abnormalities/*genetics ; *Genes, Lethal ; *Genes, Recessive ; *Genome ; Likelihood Functions ; Male ; Mutation ; Phenotype ; Xenopus laevis/genetics ; Zebrafish/abnormalities/*genetics
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  • 16
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-16
    Description: The corepressor CtBP (carboxyl-terminal binding protein) is involved in transcriptional pathways important for development, cell cycle regulation, and transformation. We demonstrate that CtBP binding to cellular and viral transcriptional repressors is regulated by the nicotinamide adenine dinucleotides NAD+ and NADH, with NADH being two to three orders of magnitude more effective. Levels of free nuclear nicotinamide adenine dinucleotides, determined using two-photon microscopy, correspond to the levels required for half-maximal CtBP binding and are considerably lower than those previously reported. Agents capable of increasing NADH levels stimulate CtBP binding to its partners in vivo and potentiate CtBP-mediated repression. We propose that this ability to detect changes in nuclear NAD+/NADH ratio allows CtBP to serve as a redox sensor for transcription.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhang, Qinghong -- Piston, David W -- Goodman, Richard H -- K01 CA096561/CA/NCI NIH HHS/ -- R01 CA115468/CA/NCI NIH HHS/ -- R01 CA115468-05/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2002 Mar 8;295(5561):1895-7. Epub 2002 Feb 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Vollum Institute, Oregon Health Sciences University, 3181 SW Sam Jackson Park Road, Portland, OR 97201, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847309" target="_blank"〉PubMed〈/a〉
    Keywords: Adenovirus E1A Proteins/metabolism ; Alcohol Oxidoreductases ; Amino Acid Sequence ; Animals ; Binding Sites ; Cadherins/genetics ; Cell Nucleus/*metabolism ; Cytoplasm/metabolism ; DNA-Binding Proteins/chemistry/genetics/*metabolism ; *Gene Expression Regulation ; HeLa Cells ; Homeodomain Proteins/metabolism ; Humans ; Microscopy, Fluorescence ; Molecular Sequence Data ; Mutation ; NAD/*metabolism ; Oxidation-Reduction ; Phosphoproteins/chemistry/genetics/*metabolism ; Promoter Regions, Genetic ; Protein Binding ; Recombinant Fusion Proteins/metabolism ; Repressor Proteins/*metabolism ; *Transcription Factors ; Transcription, Genetic ; Transfection
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  • 17
    Publication Date: 2002-11-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Joint, Ian -- Tait, Karen -- Callow, Maureen E -- Callow, James A -- Milton, Debra -- Williams, Paul -- Camara, Miguel -- New York, N.Y. -- Science. 2002 Nov 8;298(5596):1207.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. I.Joint@pml.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12424372" target="_blank"〉PubMed〈/a〉
    Keywords: 4-Butyrolactone/*analogs & derivatives/*metabolism ; Bacterial Proteins/genetics/metabolism ; *Biofilms ; Cell Adhesion ; Cell Communication ; Chemotaxis ; Chlorophyta/*physiology ; Escherichia coli/genetics/metabolism/*physiology ; Hydrogen-Ion Concentration ; Mutation ; Spores/physiology ; *Transcription Factors ; Vibrio/genetics/metabolism/*physiology
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  • 18
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McMichael, Andrew -- Klenerman, Paul -- New York, N.Y. -- Science. 2002 May 24;296(5572):1410-1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Weatherall Institute of Molecular Medicine, Oxford OX3 9DS, UK. andrew.mcmichael@clinical-medicine.oxford.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029119" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Epitopes/genetics/immunology ; Epitopes, T-Lymphocyte/genetics/immunology ; Gene Products, pol/immunology ; Genes, MHC Class I ; HIV Antigens/genetics/*immunology ; HIV Core Protein p24/genetics/immunology ; HIV Infections/*immunology/virology ; HIV-1/genetics/*immunology/physiology ; HLA Antigens/genetics/*immunology ; HLA-B Antigens/immunology ; HLA-B27 Antigen/immunology ; Histocompatibility Antigens Class I/genetics/*immunology ; Humans ; Immunodominant Epitopes/genetics/immunology ; Macaca ; Mutation ; Simian Acquired Immunodeficiency Syndrome/immunology ; Simian Immunodeficiency Virus/genetics/immunology ; T-Lymphocytes, Cytotoxic/*immunology
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  • 19
    Publication Date: 2002-04-20
    Description: The 19S proteasome regulatory particle plays a critical role in cellular proteolysis. However, recent reports have demonstrated that 19S proteins play a nonproteolytic role in nucleotide excision repair and transcription elongation. We show by chromatin immunoprecipitation assays that proteins comprising the 19S complex are recruited to the GAL1-10 promoter by the Gal4 transactivator upon induction with galactose. This recruited complex does not contain proteins from the 20S proteolytic particle and includes a subset of the 19S proteins. This subset is also specifically retained from an extract by the Gal4 activation domain. These data indicate that in vivo, the base of the 19S complex functions independently of the larger complex and plays a direct, nonproteolytic role in RNA polymerase II transcription.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gonzalez, Fernando -- Delahodde, Agnes -- Kodadek, Thomas -- Johnston, Stephen Albert -- New York, N.Y. -- Science. 2002 Apr 19;296(5567):548-50.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Biomedical Inventions, University of Texas-Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-8573, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11964484" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/genetics/*metabolism ; Cysteine Endopeptidases/metabolism ; DNA, Fungal/genetics/metabolism ; DNA-Binding Proteins ; Endopeptidases/*metabolism ; Fungal Proteins/genetics/metabolism ; Galactose/metabolism ; Gene Expression Regulation, Fungal ; Multienzyme Complexes/metabolism ; Mutation ; Precipitin Tests ; *Promoter Regions, Genetic ; Proteasome Endopeptidase Complex ; Recombinant Fusion Proteins/metabolism ; Repressor Proteins/genetics/metabolism ; *Saccharomyces cerevisiae Proteins ; Transcription Factors/genetics/metabolism ; *Transcription, Genetic ; Ubiquitin/metabolism ; Yeasts/enzymology/*genetics
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  • 20
    Publication Date: 2002-01-19
    Description: Organs are specialized tissues used for enhanced physiology and environmental adaptation. The cells of the embryo are genetically programmed to establish organ form and function through conserved developmental modules. The zebrafish is a powerful model system that is poised to contribute to our basic understanding of vertebrate organogenesis. This review develops the theme of modules and illustrates how zebrafish have been particularly useful for understanding heart and blood formation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Thisse, Christine -- Zon, Leonard I -- DK49216/DK/NIDDK NIH HHS/ -- R01-HL-48801/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 18;295(5554):457-62.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut de Biologie Moleculaire et Cellulaire, CNRS, INSERM, Universite Louis Pasteur, 1 rue Laurent Fries, BP 163, 67404 Illkirch Cedex, C. U. de Strasbourg, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11799232" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blood Vessels/*embryology ; Body Patterning ; Cell Differentiation/genetics ; Cell Lineage ; *Gene Expression Regulation, Developmental ; Heart/*embryology/physiology ; *Hematopoiesis/genetics ; Humans ; Morphogenesis/genetics ; Mutation ; Stem Cells/physiology ; Zebrafish/*embryology/*genetics/metabolism
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  • 21
    Publication Date: 2002-09-21
    Description: Persons with the autosomal recessive disorder Bloom syndrome are predisposed to cancers of many types due to loss-of-function mutations in the BLM gene, which encodes a recQ-like helicase. Here we show that mice heterozygous for a targeted null mutation of Blm, the murine homolog of BLM, develop lymphoma earlier than wild-type littermates in response to challenge with murine leukemia virus and develop twice the number of intestinal tumors when crossed with mice carrying a mutation in the Apc tumor suppressor. These observations indicate that Blm is a modifier of tumor formation in the mouse and that Blm haploinsufficiency is associated with tumor predisposition, a finding with important implications for cancer risk in humans.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goss, Kathleen Heppner -- Risinger, Mary A -- Kordich, Jennifer J -- Sanz, Maureen M -- Straughen, Joel E -- Slovek, Lisa E -- Capobianco, Anthony J -- German, James -- Boivin, Gregory P -- Groden, Joanna -- CA63507/CA/NCI NIH HHS/ -- CA84291/CA/NCI NIH HHS/ -- CA88460/CA/NCI NIH HHS/ -- ES06096/ES/NIEHS NIH HHS/ -- New York, N.Y. -- Science. 2002 Sep 20;297(5589):2051-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Department of Molecular Genetics, University of Cincinnati College of Medicine, 231 Albert Sabin Way, Cincinnati, OH 45267, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12242442" target="_blank"〉PubMed〈/a〉
    Keywords: Adenoma/genetics/pathology ; Adenosine Triphosphatases/*genetics ; Alleles ; Animals ; Bloom Syndrome/*genetics ; Cells, Cultured ; Crosses, Genetic ; DNA Helicases/*genetics ; Female ; Gene Targeting ; Genes, APC ; *Genetic Predisposition to Disease ; *Heterozygote ; Humans ; Intestinal Neoplasms/*genetics/pathology ; Leukemia Virus, Murine ; Loss of Heterozygosity ; Lymphoma, T-Cell/*genetics/virology ; Male ; Mice ; Mice, Inbred C57BL ; Mutation ; RecQ Helicases ; Sister Chromatid Exchange
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  • 22
    Publication Date: 2002-06-29
    Description: Size homeostasis in budding yeast requires that cells grow to a critical size before commitment to division in the late prereplicative growth phase of the cell cycle, an event termed Start. We determined cell size distributions for the complete set of approximately 6000 Saccharomyces cerevisiae gene deletion strains and identified approximately 500 abnormally small (whi) or large (lge) mutants. Genetic analysis revealed a complex network of newly found factors that govern critical cell size at Start, the most potent of which were Sfp1, Sch9, Cdh1, Prs3, and Whi5. Ribosome biogenesis is intimately linked to cell size through Sfp1, a transcription factor that controls the expression of at least 60 genes implicated in ribosome assembly. Cell growth and division appear to be coupled by multiple conserved mechanisms.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jorgensen, Paul -- Nishikawa, Joy L -- Breitkreutz, Bobby-Joe -- Tyers, Mike -- New York, N.Y. -- Science. 2002 Jul 19;297(5580):395-400. Epub 2002 Jun 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medical Genetics and Microbiology, University of Toronto, Toronto, Ontario, Canada M5S 1A8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12089449" target="_blank"〉PubMed〈/a〉
    Keywords: Cdh1 Proteins ; Cell Cycle ; *Cell Division ; Cell Nucleolus/metabolism ; Crosses, Genetic ; DNA-Binding Proteins/genetics/*physiology ; Epistasis, Genetic ; Gene Deletion ; Gene Expression Regulation, Fungal ; Genes, Essential ; *Genes, Fungal ; Mutation ; Oligonucleotide Array Sequence Analysis ; Oxygen Consumption ; Phenotype ; Protein Kinases/genetics/physiology ; Ribosomes/*metabolism ; Saccharomyces cerevisiae/*cytology/genetics/growth & ; development/*physiology/ultrastructure ; Saccharomyces cerevisiae Proteins/biosynthesis/genetics/*physiology
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  • 23
    Publication Date: 2002-04-16
    Description: One of the factors postulated to drive the aging process is the accumulation of DNA damage. Here, we provide strong support for this hypothesis by describing studies of mice with a mutation in XPD, a gene encoding a DNA helicase that functions in both repair and transcription and that is mutated in the human disorder trichothiodystrophy (TTD). TTD mice were found to exhibit many symptoms of premature aging, including osteoporosis and kyphosis, osteosclerosis, early greying, cachexia, infertility, and reduced life-span. TTD mice carrying an additional mutation in XPA, which enhances the DNA repair defect, showed a greatly accelerated aging phenotype, which correlated with an increased cellular sensitivity to oxidative DNA damage. We hypothesize that aging in TTD mice is caused by unrepaired DNA damage that compromises transcription, leading to functional inactivation of critical genes and enhanced apoptosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉de Boer, Jan -- Andressoo, Jaan Olle -- de Wit, Jan -- Huijmans, Jan -- Beems, Rudolph B -- van Steeg, Harry -- Weeda, Geert -- van der Horst, Gijsbertus T J -- van Leeuwen, Wibeke -- Themmen, Axel P N -- Meradji, Morteza -- Hoeijmakers, Jan H J -- AG 17242-02/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2002 May 17;296(5571):1276-9. Epub 2002 Apr 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Medical Genetics Center, Department of Cell Biology and Genetics, Center for Biomedical Genetics, Erasmus University, 3000 DR Rotterdam, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11950998" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Aging, Premature/*etiology ; Animals ; Apoptosis ; Bone Density ; Cachexia/etiology ; Crosses, Genetic ; *DNA Damage ; DNA Helicases/genetics/*physiology ; *DNA Repair ; DNA-Binding Proteins/genetics/physiology ; Female ; Fertility ; Gene Targeting ; Growth Disorders/etiology/genetics ; Hair Diseases/genetics ; Kyphosis/etiology/genetics/pathology ; Male ; Mice ; Mutation ; Oxidative Stress ; Phenotype ; Point Mutation ; Proteins/genetics/*physiology ; RNA-Binding Proteins/genetics/physiology ; *Transcription Factors ; Transcription, Genetic ; Xeroderma Pigmentosum Group A Protein ; Xeroderma Pigmentosum Group D Protein
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  • 24
    Publication Date: 2002-01-26
    Description: Posttranscriptional gene silencing in Caenorhabditis elegans results from exposure to double-stranded RNA (dsRNA), a phenomenon designated as RNA interference (RNAi), or from co-suppression, in which transgenic DNA leads to silencing of both the transgene and the endogenous gene. Here we show that single-stranded RNA oligomers of antisense polarity can also be potent inducers of gene silencing. As is the case for co-suppression, antisense RNAs act independently of the RNAi genes rde-1 and rde-4 but require the mutator/RNAi gene mut-7 and a putative DEAD box RNA helicase, mut-14. Our data favor the hypothesis that gene silencing is accomplished by RNA primer extension using the mRNA as template, leading to dsRNA that is subsequently degraded.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tijsterman, Marcel -- Ketting, Rene F -- Okihara, Kristy L -- Sijen, Titia -- Plasterk, Ronald H A -- New York, N.Y. -- Science. 2002 Jan 25;295(5555):694-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Hubrecht Laboratory, Center for Biomedical Genetics, Uppsalalaan 8, 3584 CT, Utrecht, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11809977" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Animals ; Caenorhabditis elegans/embryology/enzymology/*genetics ; Caenorhabditis elegans Proteins/chemistry/genetics/*metabolism ; Carrier Proteins/genetics/metabolism ; DEAD-box RNA Helicases/chemistry/genetics/*metabolism ; *Gene Silencing ; *Genes, Helminth ; Genes, Reporter ; Green Fluorescent Proteins ; Luminescent Proteins/genetics/metabolism ; Mutation ; Oligoribonucleotides/genetics ; RNA Helicases/chemistry/genetics/*metabolism ; RNA, Antisense/*genetics ; RNA, Double-Stranded/genetics ; RNA, Helminth/genetics/metabolism ; RNA, Messenger/genetics/metabolism
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  • 25
    Publication Date: 2002-10-26
    Description: The insulin/IGF-1 (where IGF-1 is insulin-like growth factor-1) signaling pathway influences longevity, reproduction, and diapause in many organisms. Because of the fundamental importance of this system in animal physiology, we asked when during the animal's life it is required to regulate these different processes. We find that in Caenorhabditis elegans, the pathway acts during adulthood, to relatively advanced ages, to influence aging. In contrast, it regulates diapause during development. In addition, the pathway controls longevity and reproduction independently of one another. Together our findings show that life-span regulation can be dissociated temporally from phenotypes that might seem to decrease the quality of life.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dillin, Andrew -- Crawford, Douglas K -- Kenyon, Cynthia -- 5RO1AG11816/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2002 Oct 25;298(5594):830-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143-0448, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12399591" target="_blank"〉PubMed〈/a〉
    Keywords: Aging ; Animals ; Caenorhabditis elegans/genetics/growth & development/metabolism/*physiology ; Caenorhabditis elegans Proteins/genetics/physiology ; DEAD-box RNA Helicases ; Forkhead Transcription Factors ; Insulin/*physiology ; Insulin-Like Growth Factor I/*physiology ; Life Cycle Stages/physiology ; Longevity ; Mutation ; Oxidative Stress ; RNA Helicases/genetics/physiology ; RNA Interference ; Receptor, Insulin/genetics/*physiology ; Reproduction ; *Signal Transduction ; Temperature ; Transcription Factors/genetics/physiology
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  • 26
    Publication Date: 2002-09-28
    Description: Unc104/KIF1A belongs to a class of monomeric kinesin motors that have been thought to possess an unusual motility mechanism. Unlike the unidirectional motion driven by the coordinated actions of the two heads in conventional kinesins, single-headed KIF1A was reported to undergo biased diffusional motion along microtubules. Here, we show that Unc104/KIF1A can dimerize and move unidirectionally and processively with rapid velocities characteristic of transport in living cells. These results suggest that Unc104/KIF1A operates in vivo by a mechanism similar to conventional kinesin and that regulation of motor dimerization may be used to control transport by this class of kinesins.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tomishige, Michio -- Klopfenstein, Dieter R -- Vale, Ronald D -- AR42895/AR/NIAMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Sep 27;297(5590):2263-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Howard Hughes Medical Institute and the Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94143, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12351789" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Caenorhabditis elegans ; Caenorhabditis elegans Proteins/chemistry/physiology ; Diffusion ; Dimerization ; Humans ; Kinesin/*chemistry/physiology ; Liposomes ; Microtubules/*physiology ; Molecular Motor Proteins/*chemistry/*physiology ; Molecular Sequence Data ; Movement ; Mutation ; Nerve Tissue Proteins/*chemistry/*physiology ; Protein Structure, Tertiary ; Rats ; Recombinant Fusion Proteins/chemistry
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  • 27
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-11-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Chi -- Thompson, Craig B -- New York, N.Y. -- Science. 2002 Nov 15;298(5597):1346-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cancer Biology, Abramson Family Cancer Research Institute, University of Pennsylvania, Philadelphia, PA 19104, USA. drt@mail.med.upenn.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12434041" target="_blank"〉PubMed〈/a〉
    Keywords: Antineoplastic Agents/*pharmacology/therapeutic use ; *Apoptosis ; Asparagine/metabolism ; Aspartic Acid/metabolism ; Cyclin-Dependent Kinase Inhibitor p21 ; Cyclins/metabolism ; *DNA Damage ; DNA, Neoplasm/drug effects ; Genes, Retinoblastoma ; Genes, p53 ; Humans ; Models, Biological ; Mutation ; Neoplasms/*drug therapy/metabolism/*pathology ; Protein Binding ; Protein Structure, Tertiary ; Proto-Oncogene Proteins c-bcl-2/*metabolism ; Retinoblastoma Protein/metabolism ; Tumor Suppressor Protein p53/metabolism ; bcl-X Protein
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  • 28
    Publication Date: 2002-08-17
    Description: The enediynes exemplify nature's ingenuity. We have cloned and characterized the biosynthetic locus coding for perhaps the most notorious member of the nonchromoprotein enediyne family, calicheamicin. This gene cluster contains an unusual polyketide synthase (PKS) that is demonstrated to be essential for enediyne biosynthesis. Comparison of the calicheamicin locus with the locus encoding the chromoprotein enediyne C-1027 reveals that the enediyne PKS is highly conserved among these distinct enediyne families. Contrary to previous hypotheses, this suggests that the chromoprotein and nonchromoprotein enediynes are generated by similar biosynthetic pathways.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ahlert, Joachim -- Shepard, Erica -- Lomovskaya, Natalia -- Zazopoulos, Emmanuel -- Staffa, Alfredo -- Bachmann, Brian O -- Huang, Kexue -- Fonstein, Leonid -- Czisny, Anne -- Whitwam, Ross E -- Farnet, Chris M -- Thorson, Jon S -- CA08748/CA/NCI NIH HHS/ -- CA84374/CA/NCI NIH HHS/ -- GM58196/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Aug 16;297(5584):1173-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory for Biosynthetic Chemistry, Pharmaceutical Sciences Division, School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, WI 53705, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12183629" target="_blank"〉PubMed〈/a〉
    Keywords: *Aminoglycosides ; Anti-Bacterial Agents/*biosynthesis ; Antibiotics, Antineoplastic/*biosynthesis ; Blotting, Southern ; Chromatography, High Pressure Liquid ; Cloning, Molecular ; Conserved Sequence ; Enediynes ; *Genes, Bacterial ; Micromonospora/enzymology/*genetics/metabolism ; Multienzyme Complexes/*chemistry/*genetics/metabolism ; Multigene Family ; Mutation ; Open Reading Frames ; Polymerase Chain Reaction ; Protein Structure, Tertiary ; Sequence Analysis, DNA
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  • 29
    Publication Date: 2002-09-07
    Description: The Golgi-localized, gamma-ear-containing, adenosine diphosphate ribosylation factor-binding proteins (GGAs) are multidomain proteins that bind mannose 6-phosphate receptors (MPRs) in the Golgi and have an essential role in lysosomal enzyme sorting. Here the GGAs and the coat protein adaptor protein-1 (AP-1) were shown to colocalize in clathrin-coated buds of the trans-Golgi networks of mouse L cells and human HeLa cells. Binding studies revealed a direct interaction between the hinge domains of the GGAs and the gamma-ear domain of AP-1. Further, AP-1 contained bound casein kinase-2 that phosphorylated GGA1 and GGA3, thereby causing autoinhibition. This could induce the directed transfer of the MPRs from GGAs to AP-1. MPRs that are defective in binding to GGAs are poorly incorporated into AP-1-containing clathrin-coated vesicles. Thus, the GGAs and AP-1 interact to package MPRs into AP-1-containing coated vesicles.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Doray, Balraj -- Ghosh, Pradipta -- Griffith, Janice -- Geuze, Hans J -- Kornfeld, Stuart -- R01 CA-08759/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2002 Sep 6;297(5587):1700-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Internal Medicine, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, MO 63110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12215646" target="_blank"〉PubMed〈/a〉
    Keywords: ADP-Ribosylation Factors/*metabolism ; Adaptor Proteins, Vesicular Transport ; Animals ; Biological Transport ; Carrier Proteins/*metabolism ; Cattle ; Cell Line ; Clathrin-Coated Vesicles/metabolism ; HeLa Cells ; Humans ; L Cells (Cell Line) ; Membrane Proteins/*metabolism ; Mice ; Mutation ; Phosphorylation ; Protein Binding ; Receptor, IGF Type 2/genetics/*metabolism ; Recombinant Proteins/metabolism ; trans-Golgi Network/*metabolism
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  • 30
    Publication Date: 2002-07-27
    Description: Budding yeast Mec1, homolog of mammalian ATR, is an essential protein that mediates S-phase checkpoint responses and meiotic recombination. Elimination of Mec1 function leads to genomewide fork stalling followed by chromosome breakage. Breaks do not result from stochastic collapse of stalled forks or other incidental lesions; instead, they occur in specific regions of the genome during a G2 chromosomal transition. Break regions are found to be genetically encoded replication slow zones (RSZs), a newly discovered yeast chromosomal determinant. Thus, Mec1 has important functions in normal S phase and the genome instability of mec1 (and, analogously, ATR-/-) mutants stems from defects in these basic roles.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cha, Rita S -- Kleckner, Nancy -- GM25326/GM/NIGMS NIH HHS/ -- R01 GM025326/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jul 26;297(5581):602-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12142538" target="_blank"〉PubMed〈/a〉
    Keywords: *Chromosome Breakage ; Chromosomes, Fungal/*physiology ; *DNA Replication ; DNA, Fungal/*biosynthesis ; Fungal Proteins/*physiology ; G1 Phase ; G2 Phase ; Genome, Fungal ; Hydroxyurea/pharmacology ; *Interphase ; Intracellular Signaling Peptides and Proteins ; Mutation ; Protein-Serine-Threonine Kinases ; S Phase ; Saccharomyces cerevisiae/genetics/*physiology ; *Saccharomyces cerevisiae Proteins
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  • 31
    Publication Date: 2002-10-12
    Description: Recent observations indicating that promoter identity influences alternative RNA-processing decisions have created interest in the regulatory interactions between RNA polymerase II transcription and precursor messenger RNA (pre-mRNA) processing. We examined the impact of steroid receptor-mediated transcription on RNA processing with reporter genes subject to alternative splicing driven by steroid-sensitive promoters. Steroid hormones affected the processing of pre-mRNA synthesized from steroid-sensitive promoters, but not from steroid-unresponsive promoters, in a steroid receptor-dependent and receptor-selective manner. Several nuclear receptor coregulators showed differential splicing effects, suggesting that steroid hormone receptors may simultaneously control gene transcription activity and exon content of the product mRNA by recruiting coregulators involved in both processes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Auboeuf, Didier -- Honig, Arnd -- Berget, Susan M -- O'Malley, Bert W -- GM 38526/GM/NIGMS NIH HHS/ -- HD-08818/HD/NICHD NIH HHS/ -- New York, N.Y. -- Science. 2002 Oct 11;298(5592):416-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cellular Biology, Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12376702" target="_blank"〉PubMed〈/a〉
    Keywords: *Alternative Splicing ; Animals ; Antigens, CD44/genetics ; COS Cells ; Calcitonin/genetics ; Calcitonin Gene-Related Peptide/genetics ; Carrier Proteins/*metabolism ; Dexamethasone/metabolism/pharmacology ; Estradiol/metabolism/pharmacology ; Estrogen Receptor alpha ; Estrogen Receptor beta ; Exons ; Genes, Reporter ; HeLa Cells ; Humans ; *Intracellular Signaling Peptides and Proteins ; Mutation ; Progesterone/metabolism/pharmacology ; Promoter Regions, Genetic ; Protein Structure, Tertiary ; RNA Helicases/*metabolism ; RNA-Binding Protein FUS/*metabolism ; Receptors, Estrogen/genetics/metabolism ; Receptors, Glucocorticoid/metabolism ; Receptors, Progesterone/metabolism ; Response Elements ; *Transcription, Genetic ; Transfection ; Tumor Cells, Cultured
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  • 32
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Enserink, Martin -- New York, N.Y. -- Science. 2002 May 10;296(5570):1002-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12004096" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacillus anthracis/*classification/*genetics ; *Bioterrorism ; Cattle/microbiology ; DNA Fingerprinting ; Genetic Markers ; Genetic Variation ; *Genome, Bacterial ; Goats/microbiology ; Mutation ; Plasmids ; *Sequence Analysis, DNA
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  • 33
    Publication Date: 2002-08-17
    Description: C-1027 is a potent antitumor agent with a previously undescribed molecular architecture and mode of action. Cloning and characterization of the 85-kilobase C-1027 biosynthesis gene cluster from Streptomyces globisporus revealed (i) an iterative type I polyketide synthase that is distinct from any bacterial polyketide synthases known to date, (ii) a general polyketide pathway for the biosynthesis of both the 9- and 10-membered enediyne antibiotics, and (iii) a convergent biosynthetic strategy for the C-1027 chromophore from four building blocks. Manipulation of genes governing C-1027 biosynthesis allowed us to produce an enediyne compound in a predicted manner.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Wen -- Christenson, Steven D -- Standage, Scott -- Shen, Ben -- AI51689/AI/NIAID NIH HHS/ -- CA78747/CA/NCI NIH HHS/ -- T32 GM07377/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Aug 16;297(5584):1170-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Pharmaceutical Sciences, University of Wisconsin, Madison, WI 53705, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12183628" target="_blank"〉PubMed〈/a〉
    Keywords: *Aminoglycosides ; Anti-Bacterial Agents/*biosynthesis ; Antibiotics, Antineoplastic/*biosynthesis ; Chromatography, High Pressure Liquid ; Cloning, Molecular ; Enediynes ; *Genes, Bacterial ; Multienzyme Complexes/chemistry/genetics/metabolism ; Multigene Family ; Mutation ; Open Reading Frames ; Protein Structure, Tertiary ; Streptomyces/enzymology/*genetics/*metabolism
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  • 34
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-07-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vogel, Gretchen -- New York, N.Y. -- Science. 2002 Jul 19;297(5580):328.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12130764" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; Cell Count ; Cell Division ; Cells, Cultured ; Cerebral Cortex/cytology/*embryology ; Cytoskeletal Proteins/*genetics/physiology ; Gene Expression Profiling ; Gene Expression Regulation, Developmental ; Homeodomain Proteins/*genetics/physiology ; Humans ; Mice ; Mice, Transgenic ; Mutation ; Neurons/cytology/physiology ; Pituitary Gland/*cytology/growth & development ; Retina/*cytology/growth & development ; Stem Cells/cytology/*physiology ; Trans-Activators/*genetics/physiology ; beta Catenin
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  • 35
    Publication Date: 2002-02-16
    Description: Animal SGT1 is a component of Skp1-Cullin-F-box protein (SCF) ubiquitin ligases that target regulatory proteins for degradation. Mutations in one (SGT1b) of two highly homologous Arabidopsis SGT1 genes disable early plant defenses conferred by multiple resistance (R) genes. Loss of SGT1b function in resistance is not compensated for by SGT1a. R genes differ in their requirements for SGT1b and a second resistance signaling gene, RAR1, that was previously implicated as an SGT1 interactor. Moreover, SGT1b and RAR1 contribute additively to RPP5-mediated pathogen recognition. These data imply both operationally distinct and cooperative functions of SGT1 and RAR1 in plant disease resistance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Austin, Mark J -- Muskett, Paul -- Kahn, Katherine -- Feys, Bart J -- Jones, Jonathan D G -- Parker, Jane E -- New York, N.Y. -- Science. 2002 Mar 15;295(5562):2077-80. Epub 2002 Feb 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR4 7UH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847308" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Amino Acid Sequence ; Arabidopsis/*genetics/metabolism/microbiology ; Arabidopsis Proteins/chemistry/*genetics/*metabolism ; Carrier Proteins/chemistry/genetics/*metabolism ; Cell Cycle Proteins/chemistry/*genetics/*metabolism ; Cell Death ; *Genes, Plant ; Immunity, Innate ; Molecular Sequence Data ; Mutation ; Oomycetes/pathogenicity/physiology ; *Plant Diseases ; Plant Leaves/microbiology ; Plant Proteins/*genetics/physiology ; Protein Structure, Tertiary ; Sequence Alignment ; Spores, Fungal/physiology
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  • 36
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-11
    Description: Thermophilic microbial inhabitants of active seafloor and continental hot springs populate the deepest branches of the universal phylogenetic tree, making hydrothermal ecosystems the most ancient continuously inhabited ecosystems on Earth. Geochemical consequences of hot water-rock interactions render these environments habitable and supply a diverse array of energy sources. Clues to the strategies for how life thrives in these dynamic ecosystems are beginning to be elucidated through a confluence of biogeochemistry, microbiology, ecology, molecular biology, and genomics. These efforts have the potential to reveal how ecosystems originate, the extent of the subsurface biosphere, and the driving forces of evolution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reysenbach, Anna-Louise -- Shock, Everett -- New York, N.Y. -- Science. 2002 May 10;296(5570):1077-82.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Portland State University, Portland, OR 97201, USA. reysenbacha@pdx.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12004120" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Archaea/classification/genetics/metabolism/*physiology ; Bacteria/classification/genetics/metabolism ; *Bacterial Physiological Phenomena ; Biofilms/growth & development ; Biological Evolution ; *Ecosystem ; Energy Metabolism ; Environmental Microbiology ; Gene Transfer, Horizontal ; Genetic Variation ; *Geologic Sediments ; *Hot Temperature ; Mutation ; Phylogeny ; *Water Microbiology
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  • 37
    Publication Date: 2002-07-27
    Description: Checkpoint-mediated control of replicating chromosomes is essential for preventing cancer. In yeast, Rad53 kinase protects stalled replication forks from pathological rearrangements. To characterize the mechanisms controlling fork integrity, we analyzed replication intermediates formed in response to replication blocks using electron microscopy. At the forks, wild-type cells accumulate short single-stranded regions, which likely causes checkpoint activation, whereas rad53 mutants exhibit extensive single-stranded gaps and hemi-replicated intermediates, consistent with a lagging-strand synthesis defect. Further, rad53 cells accumulate Holliday junctions through fork reversal. We speculate that, in checkpoint mutants, abnormal replication intermediates begin to form because of uncoordinated replication and are further processed by unscheduled recombination pathways, causing genome instability.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sogo, Jose M -- Lopes, Massimo -- Foiani, Marco -- New York, N.Y. -- Science. 2002 Jul 26;297(5581):599-602.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Cell Biology, ETH Honggerberg, CH-8093 Zurich, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12142537" target="_blank"〉PubMed〈/a〉
    Keywords: *Cell Cycle Proteins ; Checkpoint Kinase 2 ; Cross-Linking Reagents/pharmacology ; *DNA Replication ; DNA, Fungal/biosynthesis/chemistry/*metabolism ; DNA, Single-Stranded/chemistry/*metabolism ; Furocoumarins/pharmacology ; Hydroxyurea/pharmacology ; Microscopy, Electron ; Mutation ; Nucleic Acid Conformation ; Nucleosomes/metabolism/ultrastructure ; Phosphorylation ; Protein-Serine-Threonine Kinases/genetics/metabolism ; *Recombination, Genetic ; Saccharomyces cerevisiae/*genetics/*metabolism ; *Saccharomyces cerevisiae Proteins
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  • 38
    Publication Date: 2002-08-24
    Description: Polyketide synthases (PKSs) assemble the polyketide carbon backbone by sequential decarboxylative condensation of acyl coenzyme A (CoA) precursors, and the C-C bond-forming step in this process is catalyzed by the beta-ketoacyl synthase (KS) domain or subunit. Genetic and biochemical characterization of the nonactin biosynthesis gene cluster from Streptomyces griseus revealed two KSs, NonJ and NonK, that are highly homologous to known KSs but catalyze sequential condensation of the acyl CoA substrates by forming C-O rather than C-C bonds. This chemistry can be used in PKS engineering to increase the scope and diversity of polyketide biosynthesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kwon, Hyung-Jin -- Smith, Wyatt C -- Scharon, A Janelle -- Hwang, Sung Hee -- Kurth, Mark J -- Shen, Ben -- AI51689/AI/NIAID NIH HHS/ -- T32 GM08505/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Aug 23;297(5585):1327-30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Pharmaceutical Sciences and, Department of Chemistry, University of Wisconsin, Madison, WI 53705, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12193782" target="_blank"〉PubMed〈/a〉
    Keywords: 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/*chemistry/*metabolism ; Acyl Coenzyme A/metabolism ; Amino Acid Sequence ; Binding Sites ; Catalysis ; Chromatography, High Pressure Liquid ; Genes, Bacterial ; Macrolides/chemistry/*metabolism ; Molecular Sequence Data ; Multienzyme Complexes/*chemistry/*metabolism ; Multigene Family ; Mutation ; Protein Engineering ; Protein Subunits ; Sequence Alignment ; Spectrometry, Mass, Electrospray Ionization ; Streptomyces/genetics ; Streptomyces griseus/*enzymology/genetics ; Transformation, Bacterial
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  • 39
    Publication Date: 2002-02-16
    Description: Phosphorylation of mitogen-activated protein kinases (MAPKs) on specific tyrosine and threonine sites by MAP kinase kinases (MAPKKs) is thought to be the sole activation mechanism. Here, we report an unexpected activation mechanism for p38alpha MAPK that does not involve the prototypic kinase cascade. Rather it depends on interaction of p38alpha with TAB1 [transforming growth factor-beta-activated protein kinase 1 (TAK1)-binding protein 1] leading to autophosphorylation and activation of p38alpha. We detected formation of a TRAF6-TAB1-p38alpha complex and showed stimulus-specific TAB1-dependent and TAB1-independent p38alpha activation. These findings suggest that alternative activation pathways contribute to the biological responses of p38alpha to various stimuli.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ge, Baoxue -- Gram, Hermann -- Di Padova, Franco -- Huang, Betty -- New, Liguo -- Ulevitch, Richard J -- Luo, Ying -- Han, Jiahuai -- AI41637/AI/NIAID NIH HHS/ -- HL07195/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 15;295(5558):1291-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847341" target="_blank"〉PubMed〈/a〉
    Keywords: *Adaptor Proteins, Signal Transducing ; Binding Sites ; Calcium-Calmodulin-Dependent Protein Kinases/metabolism ; Carrier Proteins/chemistry/genetics/*metabolism ; Cell Line ; *Drosophila Proteins ; Enzyme Activation ; Enzyme Inhibitors/pharmacology ; Humans ; Imidazoles/pharmacology ; *Intracellular Signaling Peptides and Proteins ; MAP Kinase Kinase 6 ; *MAP Kinase Signaling System ; Membrane Glycoproteins/metabolism ; Mitogen-Activated Protein Kinase 14 ; Mitogen-Activated Protein Kinase Kinases/metabolism ; Mitogen-Activated Protein Kinases/antagonists & ; inhibitors/chemistry/genetics/*metabolism ; Mutation ; Peptide Mapping ; Peroxynitrous Acid/pharmacology ; Phosphorylation ; Proteins/metabolism ; Pyridines/pharmacology ; Receptors, Cell Surface/metabolism ; Recombinant Fusion Proteins/metabolism ; TNF Receptor-Associated Factor 6 ; Toll-Like Receptors ; Tumor Necrosis Factor-alpha/pharmacology ; Two-Hybrid System Techniques ; p38 Mitogen-Activated Protein Kinases
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  • 40
    Publication Date: 2002-02-02
    Description: The hypoxia-inducible factors (HIFs) 1alpha and 2alpha are key mammalian transcription factors that exhibit dramatic increases in both protein stability and intrinsic transcriptional potency during low-oxygen stress. This increased stability is due to the absence of proline hydroxylation, which in normoxia promotes binding of HIF to the von Hippel-Lindau (VHL tumor suppressor) ubiquitin ligase. We now show that hypoxic induction of the COOH-terminal transactivation domain (CAD) of HIF occurs through abrogation of hydroxylation of a conserved asparagine in the CAD. Inhibitors of Fe(II)- and 2-oxoglutarate-dependent dioxygenases prevented hydroxylation of the Asn, thus allowing the CAD to interact with the p300 transcription coactivator. Replacement of the conserved Asn by Ala resulted in constitutive p300 interaction and strong transcriptional activity. Full induction of HIF-1alpha and -2alpha, therefore, relies on the abrogation of both Pro and Asn hydroxylation, which during normoxia occur at the degradation and COOH-terminal transactivation domains, respectively.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lando, David -- Peet, Daniel J -- Whelan, Dean A -- Gorman, Jeffrey J -- Whitelaw, Murray L -- New York, N.Y. -- Science. 2002 Feb 1;295(5556):858-61.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biosciences (Biochemistry), Adelaide University, SA 5005, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11823643" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Amino Acid Substitution ; Animals ; Asparagine/*metabolism ; Basic Helix-Loop-Helix Transcription Factors ; Cell Hypoxia/*physiology ; Cell Line ; Humans ; Hydroxylation ; Hypoxia-Inducible Factor 1, alpha Subunit ; Mass Spectrometry ; Mice ; Mixed Function Oxygenases/metabolism ; Molecular Sequence Data ; Mutation ; Oxygen/*physiology ; Proline/metabolism ; Protein Structure, Tertiary ; Recombinant Fusion Proteins/metabolism ; Trans-Activators/chemistry/genetics/*metabolism ; Transcription Factors/chemistry/genetics/*metabolism ; *Transcriptional Activation
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  • 41
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-05-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Couzin, Jennifer -- New York, N.Y. -- Science. 2002 May 24;296(5572):1391-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029111" target="_blank"〉PubMed〈/a〉
    Keywords: *Chromosome Mapping/economics ; Continental Population Groups/genetics ; Costs and Cost Analysis ; Databases, Nucleic Acid ; Financing, Government ; Genetic Predisposition to Disease ; *Genome, Human ; *Genomics ; Genotype ; *Haplotypes ; Humans ; Mutation ; National Institutes of Health (U.S.) ; Polymorphism, Single Nucleotide ; Research Support as Topic ; United States
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  • 42
    Publication Date: 2002-09-21
    Description: To make messenger RNA transcripts, bacteriophage T7 RNA polymerase (T7 RNAP) undergoes a transition from an initiation phase, which only makes short RNA fragments, to a stable elongation phase. We have determined at 2.1 angstrom resolution the crystal structure of a T7 RNAP elongation complex with 30 base pairs of duplex DNA containing a "transcription bubble" interacting with a 17-nucleotide RNA transcript. The transition from an initiation to an elongation complex is accompanied by a major refolding of the amino-terminal 300 residues. This results in loss of the promoter binding site, facilitating promoter clearance, and creates a tunnel that surrounds the RNA transcript after it peels off a seven-base pair heteroduplex. Formation of the exit tunnel explains the enhanced processivity of the elongation complex. Downstream duplex DNA binds to the fingers domain, and its orientation relative to upstream DNA in the initiation complex implies an unwinding that could facilitate formation of the open promoter complex.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yin, Y Whitney -- Steitz, Thomas A -- GM57510/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Nov 15;298(5597):1387-95. Epub 2002 Sep 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520-8114, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12242451" target="_blank"〉PubMed〈/a〉
    Keywords: Bacteriophage T7/enzymology ; Binding Sites ; Crystallization ; Crystallography, X-Ray ; DNA/*chemistry/metabolism ; DNA-Directed RNA Polymerases/*chemistry/genetics/*metabolism ; Models, Molecular ; Mutation ; N-Acetylmuramoyl-L-alanine Amidase/metabolism ; Nucleic Acid Heteroduplexes ; Promoter Regions, Genetic ; Protein Conformation ; Protein Folding ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Protein Subunits ; RNA Polymerase II/chemistry ; RNA, Messenger/*chemistry/metabolism ; Taq Polymerase/chemistry ; Templates, Genetic ; Transcription Initiation Site ; *Transcription, Genetic ; Viral Proteins
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  • 43
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marx, Jean -- New York, N.Y. -- Science. 2002 Feb 8;295(5557):943-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11834787" target="_blank"〉PubMed〈/a〉
    Keywords: Azacitidine/*analogs & derivatives/pharmacology ; Cell Division ; Cell Transformation, Neoplastic ; DNA (Cytosine-5-)-Methyltransferase/metabolism ; *DNA Methylation ; *Gene Silencing ; *Genes, Tumor Suppressor ; Humans ; Leukemia, Promyelocytic, Acute/blood/*genetics/pathology ; Leukocytes/cytology ; Mutation ; Neoplasm Proteins/genetics/*metabolism ; Oncogene Proteins, Fusion/genetics/*metabolism ; Promoter Regions, Genetic ; Receptors, Retinoic Acid/*genetics ; Tretinoin/metabolism/pharmacology ; Zinc/pharmacology
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  • 44
    Publication Date: 2002-06-18
    Description: To identify genetic determinants of hypoxic cell death, we screened for hypoxia-resistant (Hyp) mutants in Caenorhabditis elegans and found that specific reduction-of-function (rf) mutants of daf-2, an insulin/insulinlike growth factor (IGF) receptor (INR) homolog gene, were profoundly Hyp. The hypoxia resistance was acutely inducible just before hypoxic exposure and was mediated through an AKT-1/PDK-1/forkhead transcription factor pathway overlapping with but distinct from signaling pathways regulating life-span and stress resistance. Selective neuronal and muscle expression of daf-2(+) restored hypoxic death, and daf-2(rf) prevented hypoxia-induced muscle and neuronal cell death, which demonstrates a potential for INR modulation in prophylaxis against hypoxic injury of neurons and myocytes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scott, Barbara A -- Avidan, Michael S -- Crowder, C Michael -- R01 NS045905/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jun 28;296(5577):2388-91. Epub 2002 Jun 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Anesthesiology, Washington University School of Medicine, St. Louis, MO 63110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12065745" target="_blank"〉PubMed〈/a〉
    Keywords: 3-Phosphoinositide-Dependent Protein Kinases ; Alleles ; Animals ; Anoxia/genetics ; Axons/ultrastructure ; Caenorhabditis elegans/genetics/growth & development/*physiology ; Caenorhabditis elegans Proteins/genetics/*physiology ; Cell Death ; Cell Nucleus/ultrastructure ; Cell Survival ; Forkhead Transcription Factors ; Genes, Helminth ; Intestines/cytology/metabolism ; Longevity ; Movement ; Muscles/cytology/metabolism/ultrastructure ; Mutation ; Mutation, Missense ; Neurons/cytology/metabolism/ultrastructure ; Phenotype ; *Phosphatidylinositol 3-Kinases ; Protein-Serine-Threonine Kinases/metabolism ; Protein-Tyrosine Kinases/genetics/physiology ; Receptor, Insulin/genetics/*physiology ; *Signal Transduction ; Temperature ; Transcription Factors/genetics/physiology
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  • 45
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gibbons, Ann -- New York, N.Y. -- Science. 2002 Feb 15;295(5558):1217.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847321" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Cercopithecidae ; DNA/*genetics ; Evolution, Molecular ; *Fossils ; *Hominidae ; Humans ; Mutation ; Pan troglodytes
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  • 46
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scott, Ian C -- Stainier, Didier Y R -- New York, N.Y. -- Science. 2002 Dec 13;298(5601):2141-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA. ianjr88@itsa.ucsf.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12481123" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bromodeoxyuridine/metabolism ; *Cell Cycle Proteins ; Cell Differentiation ; *Cell Division ; Extremities/physiology ; Heart/*physiology ; Heart Injuries/pathology/physiopathology ; Heart Ventricles/surgery ; Humans ; Mice ; Mutation ; Myocytes, Cardiac/*physiology ; *Protein Kinases ; Protein-Serine-Threonine Kinases/genetics/metabolism ; Protein-Tyrosine Kinases/genetics/metabolism ; *Regeneration/genetics/physiology ; Zebrafish/genetics/*physiology ; *Zebrafish Proteins
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  • 47
    Publication Date: 2002-06-29
    Description: Comparison of two fully sequenced genomes of Buchnera aphidicola, the obligate endosymbionts of aphids, reveals the most extreme genome stability to date: no chromosome rearrangements or gene acquisitions have occurred in the past 50 to 70 million years, despite substantial sequence evolution and the inactivation and loss of individual genes. In contrast, the genomes of their closest free-living relatives, Escherichia coli and Salmonella spp., are more than 2000-fold more labile in content and gene order. The genomic stasis of B. aphidicola, likely attributable to the loss of phages, repeated sequences, and recA, indicates that B. aphidicola is no longer a source of ecological innovation for its hosts.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tamas, Ivica -- Klasson, Lisa -- Canback, Bjorn -- Naslund, A Kristina -- Eriksson, Ann-Sofie -- Wernegreen, Jennifer J -- Sandstrom, Jonas P -- Moran, Nancy A -- Andersson, Siv G E -- New York, N.Y. -- Science. 2002 Jun 28;296(5577):2376-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Evolution, Evolutionary Biology Center, University of Uppsala, Uppsala, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12089438" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aphids/*microbiology/physiology ; Bacterial Proteins/chemistry/genetics ; Biological Evolution ; Buchnera/*genetics/physiology ; DNA, Intergenic ; Diet ; Ecosystem ; Escherichia coli/genetics ; *Evolution, Molecular ; Genes, Bacterial ; Genetic Variation ; *Genome, Bacterial ; Molecular Sequence Data ; Mutation ; Operon ; Pseudogenes ; Recombination, Genetic ; Repetitive Sequences, Nucleic Acid ; Salmonella typhimurium/genetics ; Species Specificity ; *Symbiosis
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  • 48
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-01-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tatar, Marc -- Rand, David M -- New York, N.Y. -- Science. 2002 Jan 4;295(5552):54-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912, USA. marc_tatar@brown.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11778030" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Animals ; Caenorhabditis elegans/genetics/growth & development/metabolism/*physiology ; Caenorhabditis elegans Proteins/genetics/physiology ; Cell Nucleus/metabolism ; Diet ; Electron Transport ; Energy Metabolism ; Escherichia coli/metabolism ; Fermentation ; Helminth Proteins/genetics/physiology ; Insulin/metabolism ; Larva/growth & development/metabolism ; *Longevity ; Mitochondria/metabolism ; Mutation ; Reactive Oxygen Species/metabolism ; Receptor, Insulin/genetics/physiology ; Receptors, Cytoplasmic and Nuclear/genetics/physiology ; Signal Transduction ; Ubiquinone/administration & dosage/*metabolism
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  • 49
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-09-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jenuwein, Thomas -- New York, N.Y. -- Science. 2002 Sep 27;297(5590):2215-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Research Institute of Molecular Pathology (IMP), Vienna Biocenter, Dr. Bohrgasse 7, A-1030 Vienna, Austria. jenuwein@nt.imp.univie.ac.at〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12351775" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Nucleus/metabolism ; DNA Methylation ; DNA, Fungal/genetics/metabolism ; DNA, Protozoan/genetics/metabolism ; Endoribonucleases/genetics/metabolism ; Gene Silencing ; *Genome ; Heterochromatin/genetics/*metabolism ; Histones/metabolism ; Methylation ; Models, Genetic ; Mutation ; Nuclear Proteins/chemistry/genetics/metabolism ; Phosphoproteins/chemistry/genetics/metabolism ; *Protozoan Proteins ; RNA Replicase/genetics/metabolism ; RNA, Double-Stranded/metabolism ; RNA, Fungal/genetics/metabolism ; RNA, Messenger/genetics/metabolism ; RNA, Protozoan/genetics/metabolism ; RNA, Small Nuclear/*metabolism ; RNA, Untranslated/metabolism ; *Repetitive Sequences, Nucleic Acid ; Ribonuclease III ; Schizosaccharomyces/*genetics/metabolism ; Schizosaccharomyces pombe Proteins/genetics/metabolism ; Tetrahymena/*genetics/metabolism ; Transcription, Genetic
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  • 50
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-21
    Description: Phenotypic variation among organisms is central to evolutionary adaptations underlying natural and artificial selection, and also determines individual susceptibility to common diseases. These types of complex traits pose special challenges for genetic analysis because of gene-gene and gene-environment interactions, genetic heterogeneity, low penetrance, and limited statistical power. Emerging genome resources and technologies are enabling systematic identification of genes underlying these complex traits. We propose standards for proof of gene discovery in complex traits and evaluate the nature of the genes identified to date. These proof-of-concept studies demonstrate the insights that can be expected from the accelerating pace of gene discovery in this field.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Glazier, Anne M -- Nadeau, Joseph H -- Aitman, Timothy J -- New York, N.Y. -- Science. 2002 Dec 20;298(5602):2345-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Physiological Genomics and Medicine Group, MRC Clinical Sciences Centre, Hammersmith Hospital, Imperial College Faculty of Medicine, Ducane Road, London W12 0NN, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12493905" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Chromosome Mapping ; Genetic Linkage ; *Genetic Predisposition to Disease ; Genetic Variation ; Humans ; *Multifactorial Inheritance ; Mutation ; Phenotype ; Plants/genetics ; *Quantitative Trait Loci ; *Quantitative Trait, Heritable ; Saccharomyces cerevisiae/genetics ; Sequence Analysis, DNA
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  • 51
    Publication Date: 2002-02-23
    Description: The identification of pathways mediated by the kinase Cdk5 and the ligand reelin has provided a conceptual framework for exploring the molecular mechanisms underlying proper lamination of the developing mammalian cerebral cortex. In this report, we identify a component of the regulation of Cdk5-mediated cortical lamination by genetic analysis of the roles of the class III POU domain transcription factors, Brn-1 and Brn-2, expressed during the development of the forebrain and coexpressed in most layer II-V cortical neurons. Brn-1 and Brn-2 appear to critically control the initiation of radial migration, redundantly regulating the cell-autonomous expression of the p35 and p39 regulatory subunits of Cdk5 in migrating cortical neurons, with Brn-1(-/-)/Brn-2(-/-) mice exhibiting cortical inversion.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McEvilly, Robert J -- de Diaz, Marcela Ortiz -- Schonemann, Marcus D -- Hooshmand, Farideh -- Rosenfeld, Michael G -- New York, N.Y. -- Science. 2002 Feb 22;295(5559):1528-32.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Department and School of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037-0648, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11859196" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/cytology/embryology/metabolism ; Cell Adhesion Molecules, Neuronal/genetics/metabolism ; Cell Line ; Cell Movement ; Cerebral Cortex/cytology/embryology/*metabolism ; Cyclin-Dependent Kinase 5 ; Cyclin-Dependent Kinases/metabolism ; Extracellular Matrix Proteins/genetics/metabolism ; Female ; Gene Targeting ; Hippocampus/cytology/embryology/metabolism ; Homeodomain Proteins ; In Situ Hybridization ; Male ; Mice ; Mutation ; Nerve Tissue Proteins/genetics/metabolism ; Neurons/*physiology ; Neuropeptides/genetics/*physiology ; POU Domain Factors ; Serine Endopeptidases ; Trans-Activators/genetics/*physiology ; Transcription Factors/genetics/*physiology ; *Transcription, Genetic
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  • 52
    Publication Date: 2002-09-07
    Description: Distal limb development and specification of digit identities in tetrapods are under the control of a mesenchymal organizer called the polarizing region. Sonic Hedgehog (SHH) is the morphogenetic signal produced by the polarizing region in the posterior limb bud. Ectopic anterior SHH signaling induces digit duplications and has been suspected as a major cause underlying congenital malformations that result in digit polydactyly. Here, we report that the polydactyly of Gli3-deficient mice arises independently of SHH signaling. Disruption of one or both Gli3 alleles in mouse embryos lacking Shh progressively restores limb distal development and digit formation. Our genetic analysis indicates that SHH signaling counteracts GLI3-mediated repression of key regulator genes, cell survival, and distal progression of limb bud development.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉te Welscher, Pascal -- Zuniga, Aimee -- Kuijper, Sanne -- Drenth, Thijs -- Goedemans, Hans J -- Meijlink, Frits -- Zeller, Rolf -- New York, N.Y. -- Science. 2002 Oct 25;298(5594):827-30. Epub 2002 Sep 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Developmental Biology, Faculty of Biology, Utrecht University, Padualaan 8, NL-3584 CH Utrecht, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12215652" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Basic Helix-Loop-Helix Transcription Factors ; Cell Death ; DNA-Binding Proteins/genetics/*physiology ; Extremities/*embryology ; Fibroblast Growth Factors/genetics/metabolism ; Gene Expression Regulation, Developmental ; Genes, Homeobox ; Hedgehog Proteins ; Homeodomain Proteins/genetics/metabolism ; *Intercellular Signaling Peptides and Proteins ; Kruppel-Like Transcription Factors ; Limb Buds/cytology/embryology/metabolism ; Membrane Proteins/genetics/metabolism ; Mice ; Mutation ; *Nerve Tissue Proteins ; Oncogene Proteins/genetics/metabolism ; Polydactyly/genetics ; Proteins/genetics/physiology ; Receptors, Cell Surface ; Signal Transduction ; Trans-Activators/genetics/*physiology ; Transcription Factors/genetics/metabolism/*physiology ; Zebrafish Proteins
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  • 53
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-11-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pennisi, Elizabeth -- New York, N.Y. -- Science. 2002 Nov 1;298(5595):953-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12411686" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Butterflies/anatomy & histology/genetics/growth & development ; Caenorhabditis/anatomy & histology/genetics/physiology ; Cell Lineage ; *Developmental Biology ; Eye/anatomy & histology ; Female ; Fishes/anatomy & histology/genetics/growth & development ; *Genes ; Genes, Insect ; *Genetic Variation ; Male ; Mutation ; Selection, Genetic ; Sex Determination Processes ; Species Specificity ; Stomatognathic System/anatomy & histology
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  • 54
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-03-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brown, Kathryn -- New York, N.Y. -- Science. 2002 Mar 1;295(5560):1634-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11872820" target="_blank"〉PubMed〈/a〉
    Keywords: *Commerce ; DNA/genetics ; DNA, Mitochondrial/genetics ; Databases, Nucleic Acid ; Entrepreneurship ; Female ; Genetic Markers ; *Genetics, Medical ; *Genetics, Population ; Haplotypes ; Humans ; Male ; Microsatellite Repeats ; Mutation ; *Pedigree ; Y Chromosome
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  • 55
    Publication Date: 2002-09-07
    Description: The higher-order assembly of chromatin imposes structural organization on the genetic information of eukaryotes and is thought to be largely determined by posttranslational modification of histone tails. Here, we study a 20-kilobase silent domain at the mating-type region of fission yeast as a model for heterochromatin formation. We find that, although histone H3 methylated at lysine 9 (H3 Lys9) directly recruits heterochromatin protein Swi6/HP1, the critical determinant for H3 Lys9 methylation to spread in cis and to be inherited through mitosis and meiosis is Swi6 itself. We demonstrate that a centromere-homologous repeat (cenH) present at the silent mating-type region is sufficient for heterochromatin formation at an ectopic site, and that its repressive capacity is mediated by components of the RNA interference (RNAi) machinery. Moreover, cenH and the RNAi machinery cooperate to nucleate heterochromatin assembly at the endogenous mat locus but are dispensable for its subsequent inheritance. This work defines sequential requirements for the initiation and propagation of regional heterochromatic domains.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hall, Ira M -- Shankaranarayana, Gurumurthy D -- Noma, Ken-Ichi -- Ayoub, Nabieh -- Cohen, Amikam -- Grewal, Shiv I S -- GM59772/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Sep 27;297(5590):2232-7. Epub 2002 Sep 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cold Spring Harbor Laboratory, Post Office Box 100, Cold Spring Harbor, NY 11724, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12215653" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Cell Cycle Proteins/genetics/metabolism ; Centromere ; Chromosomal Proteins, Non-Histone/metabolism ; Crosses, Genetic ; DNA, Fungal/*genetics ; Endoribonucleases/genetics/metabolism ; Enzyme Inhibitors/pharmacology ; *Gene Silencing ; Heterochromatin/*metabolism ; Histone Deacetylase Inhibitors ; Histone Deacetylases/metabolism ; Histones/metabolism ; Hydroxamic Acids/pharmacology ; Methylation ; *Methyltransferases ; Models, Genetic ; Mutation ; RNA Replicase/genetics/metabolism ; RNA, Double-Stranded/genetics/metabolism ; RNA, Fungal/*genetics/metabolism ; RNA, Small Nuclear/genetics/metabolism ; *Repetitive Sequences, Nucleic Acid ; Ribonuclease III ; Schizosaccharomyces/*genetics/metabolism ; Schizosaccharomyces pombe Proteins/genetics/metabolism
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  • 56
    Publication Date: 2002-03-23
    Description: Mammalian genetic approaches to study gene function have been hampered by the lack of tools to generate stable loss-of-function phenotypes efficiently. We report here a new vector system, named pSUPER, which directs the synthesis of small interfering RNAs (siRNAs) in mammalian cells. We show that siRNA expression mediated by this vector causes efficient and specific down-regulation of gene expression, resulting in functional inactivation of the targeted genes. Stable expression of siRNAs using this vector mediates persistent suppression of gene expression, allowing the analysis of loss-of-function phenotypes that develop over longer periods of time. Therefore, the pSUPER vector constitutes a new and powerful system to analyze gene function in a variety of mammalian cell types.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brummelkamp, Thijn R -- Bernards, Rene -- Agami, Reuven -- New York, N.Y. -- Science. 2002 Apr 19;296(5567):550-3. Epub 2002 Mar 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Molecular Carcinogenesis, Division of Tumor Biology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11910072" target="_blank"〉PubMed〈/a〉
    Keywords: Anaphase-Promoting Complex-Cyclosome ; Cell Cycle Proteins ; Down-Regulation ; *Gene Silencing ; Genes, p53 ; *Genetic Techniques ; *Genetic Vectors ; Humans ; Ligases/genetics ; Mutation ; Nucleic Acid Conformation ; Phenotype ; Protein Kinases/genetics/metabolism ; Protein-Serine-Threonine Kinases ; Proto-Oncogene Proteins ; RNA, Messenger/chemistry/*genetics/metabolism ; RNA, Small Interfering ; RNA, Untranslated/chemistry/*genetics/metabolism ; Transfection ; Tumor Cells, Cultured ; Tumor Suppressor Protein p53/metabolism ; *Ubiquitin-Protein Ligase Complexes
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  • 57
    Publication Date: 2002-07-13
    Description: Arabidopsis VRN genes mediate vernalization, the process by which a long period of cold induces a mitotically stable state that leads to accelerated flowering during later development. VRN1 encodes a protein that binds DNA in vitro in a non-sequence-specific manner and functions in stable repression of the major target of the vernalization pathway, the floral repressor FLC. Overexpression of VRN1 reveals a vernalization-independent function for VRN1, mediated predominantly through the floral pathway integrator FT, and demonstrates that VRN1 requires vernalization-specific factors to target FLC.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Levy, Yaron Y -- Mesnage, Stephane -- Mylne, Joshua S -- Gendall, Anthony R -- Dean, Caroline -- New York, N.Y. -- Science. 2002 Jul 12;297(5579):243-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell and Developmental Biology, John Innes Centre, Colney Lane, Norwich NR4 7UH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12114624" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Arabidopsis/anatomy & histology/*genetics/growth & development/*physiology ; Arabidopsis Proteins/chemistry/*genetics/metabolism/*physiology ; Base Sequence ; Cloning, Molecular ; DNA, Plant/genetics/metabolism ; DNA-Binding Proteins/chemistry/*genetics/*physiology ; Down-Regulation ; Gene Expression Regulation, Plant ; Genes, Plant ; MADS Domain Proteins/genetics/metabolism ; Molecular Sequence Data ; Mutation ; Photoperiod ; Plant Proteins/genetics/metabolism ; Plant Structures/anatomy & histology/physiology ; Plants, Genetically Modified ; Protein Binding ; Recombinant Fusion Proteins/metabolism ; *Repressor Proteins ; Temperature
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  • 58
    Publication Date: 2002-04-16
    Description: Tomato plants harboring the ripening-inhibitor (rin) mutation yield fruits that fail to ripen. Additionally, rin plants display enlarged sepals and loss of inflorescence determinacy. Positional cloning of the rin locus revealed two tandem MADS-box genes (LeMADS-RIN and LeMADS-MC), whose expression patterns suggested roles in fruit ripening and sepal development, respectively. The rin mutation alters expression of both genes. Gene repression and mutant complementation demonstrate that LeMADS-RIN regulates ripening, whereas LeMADS-MC affects sepal development and inflorescence determinacy. LeMADS-RIN demonstrates an agriculturally important function of plant MADS-box genes and provides molecular insight into nonhormonal (developmental) regulation of ripening.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vrebalov, Julia -- Ruezinsky, Diane -- Padmanabhan, Veeraragavan -- White, Ruth -- Medrano, Diana -- Drake, Rachel -- Schuch, Wolfgang -- Giovannoni, Jim -- New York, N.Y. -- Science. 2002 Apr 12;296(5566):343-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS) Plant, Soil and Nutrition Lab and Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11951045" target="_blank"〉PubMed〈/a〉
    Keywords: Chromosome Mapping ; Chromosomes, Artificial, Yeast ; Cloning, Molecular ; DNA, Antisense ; DNA, Complementary ; Ethylenes/biosynthesis/pharmacology ; Fruit/physiology ; Gene Expression ; Gene Expression Regulation, Plant ; *Genes, Plant ; Genetic Complementation Test ; Lycopersicon esculentum/*genetics/*physiology ; MADS Domain Proteins/*genetics/physiology ; Molecular Sequence Data ; Mutation ; Phylogeny ; Plant Proteins/*genetics/physiology ; Plant Structures/genetics/physiology ; Plants, Genetically Modified
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  • 59
    Publication Date: 2002-05-25
    Description: Antigen-specific T cell immunity is HLA-restricted. Human immunodeficiency virus-type 1 (HIV-1) mutations that allow escape from host immune responses may therefore be HLA allele-specific. We analyzed HIV-1 reverse transcriptase sequences from a large HLA-diverse population of HIV-1-infected individuals. Polymorphisms in HIV-1 were most evident at sites of least functional or structural constraint and frequently were associated with particular host HLA class I alleles. Absence of polymorphism was also HLA allele-specific. At a population level, the degree of HLA-associated selection in viral sequence was predictive of viral load. These results support a fundamental role for HLA-restricted immune responses in driving and shaping HIV-1 evolution in vivo.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Moore, Corey B -- John, Mina -- James, Ian R -- Christiansen, Frank T -- Witt, Campbell S -- Mallal, Simon A -- New York, N.Y. -- Science. 2002 May 24;296(5572):1439-43.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Clinical Immunology and Biomedical Statistics, Royal Perth Hospital and Murdoch University, Level 2 North Block, Royal Perth Hospital, Wellington Street, WA 6000, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029127" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Alleles ; Cohort Studies ; Consensus Sequence ; Epitopes, T-Lymphocyte/chemistry/genetics/*immunology ; Genes, MHC Class I ; HIV Infections/*immunology/virology ; HIV Reverse Transcriptase/chemistry/*genetics/immunology ; HIV-1/*genetics/immunology/physiology ; HLA Antigens/*genetics/immunology ; HLA-A Antigens/genetics/immunology ; HLA-B Antigens/genetics/immunology ; Humans ; Logistic Models ; Multivariate Analysis ; Mutation ; *Polymorphism, Genetic ; RNA, Viral/blood ; Selection, Genetic ; T-Lymphocytes, Cytotoxic/*immunology ; Viral Load ; Western Australia
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  • 60
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-10-05
    Description: Insecticide resistance poses a serious threat to current malaria control efforts. The Anopheles gambiae genome will enable identification of new resistance genes and will provide new molecular targets for the design of more effective insecticides.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hemingway, Janet -- Field, Linda -- Vontas, John -- New York, N.Y. -- Science. 2002 Oct 4;298(5591):96-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12364782" target="_blank"〉PubMed〈/a〉
    Keywords: Africa South of the Sahara ; Animals ; Anopheles/*genetics/metabolism/parasitology ; Gene Expression ; Gene Expression Profiling ; *Genes, Insect ; Genes, Regulator ; *Genome ; Genomics ; Host-Parasite Interactions ; Humans ; Insect Proteins/metabolism ; Insect Vectors/genetics/metabolism/parasitology ; *Insecticide Resistance ; Insecticides/metabolism ; Malaria/prevention & control/transmission ; Mutation ; Oxidative Stress ; Parasites/physiology ; Quantitative Trait, Heritable ; Sequence Analysis, DNA
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  • 61
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-06-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Miller, Greg -- New York, N.Y. -- Science. 2002 Jun 21;296(5576):2121-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12077377" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arteries/*embryology ; Axons/physiology ; Body Patterning ; Endothelial Growth Factors/pharmacology/*physiology ; Humans ; Lymphokines/pharmacology/*physiology ; Mice ; Mobius Syndrome/pathology ; Morphogenesis ; Mutation ; Peripheral Nervous System/*embryology/metabolism ; Skin/blood supply/embryology/innervation ; Vascular Endothelial Growth Factor A ; Vascular Endothelial Growth Factors
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  • 62
    Publication Date: 2002-02-02
    Description: Amyloid is associated with debilitating human ailments including Alzheimer's and prion diseases. Biochemical, biophysical, and imaging analyses revealed that fibers produced by Escherichia coli called curli were amyloid. The CsgA curlin subunit, purified in the absence of the CsgB nucleator, adopted a soluble, unstructured form that upon prolonged incubation assembled into fibers that were indistinguishable from curli. In vivo, curli biogenesis was dependent on the nucleation-precipitation machinery requiring the CsgE and CsgF chaperone-like and nucleator proteins, respectively. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2838482/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2838482/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chapman, Matthew R -- Robinson, Lloyd S -- Pinkner, Jerome S -- Roth, Robyn -- Heuser, John -- Hammar, Marten -- Normark, Staffan -- Hultgren, Scott J -- 1 F32 AI10502-01A1/AI/NIAID NIH HHS/ -- AI29549/AI/NIAID NIH HHS/ -- AI48689/AI/NIAID NIH HHS/ -- DK51406/DK/NIDDK NIH HHS/ -- F32 AI010502/AI/NIAID NIH HHS/ -- F32 AI010502-03/AI/NIAID NIH HHS/ -- NIA P50 AG05681-17/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 1;295(5556):851-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Microbiology and Microbial Pathogenesis, Box 8230, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, MO 63110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11823641" target="_blank"〉PubMed〈/a〉
    Keywords: Adhesins, Bacterial/chemistry/genetics/metabolism/ultrastructure ; Amyloid/chemistry/*metabolism/ultrastructure ; Bacterial Proteins/chemistry/genetics/*metabolism/ultrastructure ; Biopolymers ; Circular Dichroism ; Congo Red/metabolism ; Escherichia coli/genetics/*metabolism ; Escherichia coli Proteins/chemistry/genetics/*metabolism/ultrastructure ; Mutation ; *Operon ; Protein Structure, Secondary ; Protein Subunits
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  • 63
    Publication Date: 2002-01-26
    Description: During development, neurons extend axons along defined routes to specific target cells. We show that additional mechanisms ensure that axons maintain their correct positioning in defined axonal tracts. After termination of axonal outgrowth and target recognition, axons in the ventral nerve cord (VNC) of Caenorhabditis elegans require the presence of a specific VNC neuron, PVT, to maintain their correct positioning in the left and right fascicles of the VNC. PVT may exert its stabilizing function by the temporally tightly controlled secretion of 2-immunoglobulin (Ig)-domain proteins encoded by the zig genes. Dedicated axon maintenance mechanisms may be widely used to ensure the preservation of functional neuronal circuitries.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Aurelio, Oscar -- Hall, David H -- Hobert, Oliver -- 5F32NS11107-02/NS/NINDS NIH HHS/ -- RR12596/RR/NCRR NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 25;295(5555):686-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biophysics, Center for Neurobiology and Behavior, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11809975" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Genetically Modified ; Axons/*physiology ; *Body Patterning ; Caenorhabditis elegans/embryology/genetics/*growth & development/metabolism ; Caenorhabditis elegans Proteins/chemistry/genetics/*physiology ; Cues ; Genes, Helminth ; Genes, Reporter ; Immunoglobulins/chemistry ; Interneurons/metabolism/*physiology ; Larva/genetics/metabolism ; Movement ; Mutation ; Nervous System/cytology/growth & development ; Neural Pathways/growth & development ; Phenotype ; Protein Structure, Tertiary ; Recombinant Fusion Proteins/metabolism
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  • 64
    Publication Date: 2002-06-29
    Description: Myeloperoxidase (MPO) is an abundant mammalian phagocyte hemoprotein thought to primarily mediate host defense reactions. Although its microbicidal functions are well established in vitro, humans deficient in MPO are not at unusual risk of infection. MPO was observed herein to modulate the vascular signaling and vasodilatory functions of nitric oxide (NO) during acute inflammation. After leukocyte degranulation, MPO localized in and around vascular endothelial cells in a rodent model of acute endotoxemia and impaired endothelium-dependent relaxant responses, to which MPO-deficient mice were resistant. Altered vascular responsiveness was due to catalytic consumption of NO by substrate radicals generated by MPO. Thus MPO can directly modulate vascular inflammatory responses by regulating NO bioavailability.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Eiserich, Jason P -- Baldus, Stephan -- Brennan, Marie-Luise -- Ma, Wenxin -- Zhang, Chunxiang -- Tousson, Albert -- Castro, Laura -- Lusis, Aldons J -- Nauseef, William M -- White, C Roger -- Freeman, Bruce A -- I01 BX000513/BX/BLRD VA/ -- R01 HL067930/HL/NHLBI NIH HHS/ -- R03 TW005682/TW/FIC NIH HHS/ -- New York, N.Y. -- Science. 2002 Jun 28;296(5577):2391-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Internal Medicine, Division of Nephrology, University of California, Davis, CA 95616, USA. jpeiserich@ucdavis.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12089442" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aorta ; Catalysis ; Cattle ; Cells, Cultured ; Chromans/metabolism/pharmacology ; Coculture Techniques ; Cyclic GMP/metabolism ; Endothelium, Vascular/enzymology/*physiology ; Endotoxemia/enzymology ; Humans ; Hydrogen Peroxide/metabolism/pharmacology ; Inflammation/*enzymology/physiopathology ; Leukocytes/*enzymology ; Mice ; Mice, Inbred C57BL ; Muscle, Smooth, Vascular/metabolism ; Mutation ; Nitric Oxide/*metabolism ; Oxidation-Reduction ; Peroxidase/genetics/*metabolism ; Rats ; Rats, Sprague-Dawley ; Signal Transduction ; Transfection ; Tumor Cells, Cultured ; *Vasodilation
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  • 65
    Publication Date: 2002-06-08
    Description: How stem cells are recruited to and maintained in their niches is crucial to understanding their regulation and use in regenerative medicine. Here, we demonstrate that DE-cadherin-mediated cell adhesion is required for anchoring germline stem cells (GSCs) in their niches in the Drosophila ovary. Two major components of this adhesion process, DE-cadherin and Armadillo/beta-catenin, accumulate at high levels in the junctions between GSCs and cap cells, one of the niche components. Removal of these proteins from GSCs results in stem cell loss. Furthermore, DE-cadherin is required for recruiting GSCs to their niche. Our study demonstrates that anchorage of GSCs in their niche by DE-cadherin-mediated adhesion is important for stem cell maintenance and function.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Song, Xiaoqing -- Zhu, Chun-Hong -- Doan, Chuong -- Xie, Ting -- 1R01 GM64428-01/GM/NIGMS NIH HHS/ -- HD 17608/HD/NICHD NIH HHS/ -- New York, N.Y. -- Science. 2002 Jun 7;296(5574):1855-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12052957" target="_blank"〉PubMed〈/a〉
    Keywords: Adherens Junctions/*physiology ; Alleles ; Animals ; Armadillo Domain Proteins ; Cadherins/genetics/*physiology ; Cell Adhesion ; Cell Differentiation ; Drosophila/cytology/genetics/growth & development/*physiology ; *Drosophila Proteins ; Female ; Insect Proteins/genetics/physiology ; Larva/physiology ; Mutation ; Oocytes/*cytology/physiology/ultrastructure ; Ovary/cytology/growth & development/physiology ; Proto-Oncogene Proteins/genetics/physiology ; Signal Transduction ; Stem Cells/cytology/*physiology/ultrastructure ; *Trans-Activators ; Transcription Factors ; Wnt1 Protein
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  • 66
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-10-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hochstrasser, Mark -- New York, N.Y. -- Science. 2002 Oct 18;298(5593):549-52.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. mark.hochstrasser@yale.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12386321" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Amino Acid Motifs ; Binding Sites ; Cyclin-Dependent Kinase Inhibitor Proteins ; Cysteine Endopeptidases/*metabolism ; DNA-Binding Proteins/metabolism ; Endopeptidases/chemistry/*metabolism ; Fungal Proteins/metabolism ; Metalloendopeptidases/chemistry/*metabolism ; Models, Biological ; Multienzyme Complexes/*metabolism ; Mutation ; Peptide Hydrolases/*metabolism ; Proteasome Endopeptidase Complex ; Proteins/*metabolism ; Recombinant Fusion Proteins/chemistry/metabolism ; Saccharomyces cerevisiae Proteins/chemistry/*metabolism ; Transcription Factors/metabolism ; Ubiquitins/*metabolism ; Yeasts/metabolism ; Zinc/metabolism
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  • 67
    Publication Date: 2002-02-02
    Description: The mouse vomeronasal organ (VNO) is thought to mediate social behaviors and neuroendocrine changes elicited by pheromonal cues. The molecular mechanisms underlying the sensory response to pheromones and the behavioral repertoire induced through the VNO are not fully characterized. Using the tools of mouse genetics and multielectrode recording, we demonstrate that the sensory activation of VNO neurons requires TRP2, a putative ion channel of the transient receptor potential family that is expressed exclusively in these neurons. Moreover, we show that male mice deficient in TRP2 expression fail to display male-male aggression, and they initiate sexual and courtship behaviors toward both males and females. Our study suggests that, in the mouse, sensory activation of the VNO is essential for sex discrimination of conspecifics and thus ensures gender-specific behavior.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stowers, Lisa -- Holy, Timothy E -- Meister, Markus -- Dulac, Catherine -- Koentges, Georgy -- DC03903/DC/NIDCD NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 22;295(5559):1493-500. Epub 2002 Jan 31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11823606" target="_blank"〉PubMed〈/a〉
    Keywords: *Aggression ; Animals ; Chemoreceptor Cells/*physiology ; Crosses, Genetic ; Cues ; Electrophysiology ; Electroporation ; Female ; Gene Targeting ; Male ; Maternal Behavior ; Membrane Proteins/*genetics/*physiology ; Mice ; Mice, Inbred C57BL ; Mutation ; Neurons, Afferent/*physiology ; Odors ; Olfactory Bulb/physiology ; Olfactory Mucosa/physiology ; Pheromones/*physiology/urine ; Sex Characteristics ; *Sexual Behavior, Animal ; Signal Transduction ; TRPC Cation Channels ; Video Recording ; Vomeronasal Organ/*innervation/physiology
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  • 68
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-11-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olson, Steve -- New York, N.Y. -- Science. 2002 Nov 15;298(5597):1324-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12434033" target="_blank"〉PubMed〈/a〉
    Keywords: Alcohol Dehydrogenase/genetics ; Alleles ; Genetic Predisposition to Disease ; *Genetic Variation ; *Genetics, Medical ; *Genetics, Population ; Genome, Human ; Heterozygote ; Humans ; Immunity, Innate ; Linkage Disequilibrium ; Mutation ; Receptors, CCR5/genetics ; Receptors, Dopamine D2/genetics ; Receptors, Dopamine D4 ; *Selection, Genetic ; Sequence Analysis, DNA
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  • 69
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-01-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Strauss, Evelyn -- New York, N.Y. -- Science. 2002 Jan 4;295(5552):28-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11778018" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/*genetics ; Aging, Premature/genetics ; Animals ; Cell Division ; *Genes, p53 ; Longevity/genetics ; Mice ; Mutation ; Neoplasms/*genetics/prevention & control ; Tumor Suppressor Protein p53/*physiology
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  • 70
    Publication Date: 2002-02-02
    Description: The pha-4 locus encodes a forkhead box A (FoxA/HNF3) transcription factor homolog that specifies organ identity for Caenorhabditis elegans pharyngeal cells. We used microarrays to identify pharyngeal genes and analyzed those genes to determine which were direct PHA-4 targets. Our data suggest that PHA-4 directly activates most or all pharyngeal genes. Furthermore, the relative affinity of PHA-4 for different TRTTKRY (R = A/G, K = T/G, Y = T/C) elements modulates the onset of gene expression, providing a mechanism to activate pharyngeal genes at different developmental stages. We suggest that direct transcriptional regulation of entire gene networks may be a common feature of organ identity genes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gaudet, J -- Mango, S E -- CCSG 2P30CA42014/CC/ODCDC CDC HHS/ -- R01 GM056264/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 1;295(5556):821-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Huntsman Cancer Institute, University of Utah, 2000 Circle of Hope, Salt Lake City, UT 84112, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11823633" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Binding Sites ; Biological Evolution ; Caenorhabditis elegans/*embryology/genetics/metabolism ; Caenorhabditis elegans Proteins/genetics/*metabolism ; Consensus Sequence ; Embryo, Nonmammalian/metabolism ; Embryonic Development ; *Gene Expression Regulation, Developmental ; *Genes, Helminth ; Genes, Reporter ; Introns ; Models, Genetic ; Mutation ; Myosins/genetics ; Oligonucleotide Array Sequence Analysis ; Pharynx/cytology/embryology/metabolism ; Promoter Regions, Genetic ; Recombinant Fusion Proteins/metabolism ; Trans-Activators/genetics/*metabolism
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  • 71
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-07-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sudbery, Peter -- New York, N.Y. -- Science. 2002 Jul 19;297(5580):351-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, UK. p.sudbery@sheffield.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12130772" target="_blank"〉PubMed〈/a〉
    Keywords: Cdh1 Proteins ; *Cell Division ; Cyclins/genetics/metabolism/physiology ; DNA, Fungal/metabolism ; DNA-Binding Proteins/genetics/physiology ; G1 Phase ; Genes, Essential ; *Genes, Fungal ; Homeostasis ; Mutation ; Oxygen Consumption ; Phenotype ; RNA-Binding Proteins/genetics/physiology ; Ribosomes/*metabolism/ultrastructure ; Saccharomyces cerevisiae/*cytology/*genetics/growth & development/metabolism ; Saccharomyces cerevisiae Proteins/genetics/*physiology
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  • 72
    Publication Date: 2002-03-30
    Description: Type I ubiquitin-like proteins constitute a family of protein modifiers. Here we report the identification of a posttranslational protein modifier from Saccharomyces cerevisiae, Hub1. Overexpression of Hub1 resulted in enhanced conjugate formation when its carboxyl-terminal residue was deleted, suggesting that mature Hub1 may be produced by proteolytic processing. In vivo targets of Hub1 conjugation included cell polarity factors Sph1 and Hbt1. In the hub1Delta mutant, the subcellular localization of both Hbt1 and Sph1 was disrupted, and cell polarization during the formation of mating projections was defective. Consistent with these polarization defects, the hub1Delta mutant was deficient in mating.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dittmar, Gunnar A G -- Wilkinson, Caroline R M -- Jedrzejewski, Paul T -- Finley, Daniel -- GM58223/GM/NIGMS NIH HHS/ -- GM62663/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Mar 29;295(5564):2442-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11923536" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Biological Evolution ; *Cell Polarity ; Electrophoresis, Gel, Two-Dimensional ; Gene Deletion ; Genes, Fungal ; Humans ; Ligases/chemistry/genetics/*metabolism ; Mass Spectrometry ; *Microfilament Proteins ; Molecular Sequence Data ; Morphogenesis ; Mutation ; Peptides/pharmacology ; Phenotype ; Protein Processing, Post-Translational ; Recombinant Fusion Proteins/metabolism ; Saccharomyces cerevisiae/genetics/growth & development/*physiology ; Saccharomyces cerevisiae Proteins/chemistry/genetics/*metabolism ; Schizosaccharomyces/genetics ; Sequence Alignment ; Subcellular Fractions/metabolism ; Ubiquitin/chemistry/metabolism
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  • 73
    Publication Date: 2002-05-25
    Description: The mating response of the budding yeast Saccharomyces cerevisiae is mediated by a prototypical heterotrimeric GTP-binding protein (G protein) and mitogen-activated protein kinase (MAPK) cascade. Although signal transmission by such pathways has been modeled in detail, postreceptor down-regulation is less well understood. The pheromone-responsive G protein alpha subunit (Galpha) of yeast down-regulates the mating signal, but its targets are unknown. We have found that Galpha binds directly to the mating-specific MAPK in yeast cells responding to pheromone. This interaction contributes both to modulation of the mating signal and to the chemotropic response, and it demonstrates direct communication between the top and bottom of a Galpha-MAPK pathway.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Metodiev, Metodi V -- Matheos, Dina -- Rose, Mark D -- Stone, David E -- New York, N.Y. -- Science. 2002 May 24;296(5572):1483-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, Laboratory for Molecular Biology, University of Illinois at Chicago, 900 South Ashland Avenue (M/C 567), Chicago, IL 60607, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029138" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Amino Acid Sequence ; Cell Nucleus/metabolism ; Cytoplasm/metabolism ; Down-Regulation ; *GTP-Binding Protein alpha Subunits ; GTP-Binding Protein alpha Subunits, Gq-G11 ; *GTP-Binding Protein beta Subunits ; Guanosine Diphosphate/metabolism ; Heterotrimeric GTP-Binding Proteins/chemistry/genetics/*metabolism ; *MAP Kinase Signaling System ; Mitogen-Activated Protein Kinases/*metabolism ; Molecular Sequence Data ; Mutation ; Pheromones/pharmacology ; Phosphorylation ; Recombinant Fusion Proteins/metabolism ; Saccharomyces cerevisiae/genetics/*metabolism/physiology ; Saccharomyces cerevisiae Proteins/*metabolism
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  • 74
    Publication Date: 2002-12-10
    Description: Spermatogenesis is a highly specialized process of cellular differentiation to produce spermatozoa. This differentiation process accompanies morphological changes that are controlled by a number of genes expressed in a stage-specific manner during spermatogenesis. Here we show that in mice, the absence of a testis-specific, cytoplasmic polyadenylate [poly(A)] polymerase, TPAP, results in the arrest of spermiogenesis. TPAP-deficient mice display impaired expression of haploid-specific genes that are required for the morphogenesis of germ cells. The TPAP deficiency also causes incomplete elongation of poly(A) tails of particular transcription factor messenger RNAs. Although the overall cellular level of the transcription factor TAF10 is unaffected, TAF10 is insufficiently transported into the nucleus of germ cells. We propose that TPAP governs germ cell morphogenesis by modulating specific transcription factors at posttranscriptional and posttranslational levels.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kashiwabara, Shin-Ichi -- Noguchi, Junko -- Zhuang, Tiangang -- Ohmura, Ko -- Honda, Arata -- Sugiura, Shin -- Miyamoto, Kiyoko -- Takahashi, Satoru -- Inoue, Kimiko -- Ogura, Atsuo -- Baba, Tadashi -- New York, N.Y. -- Science. 2002 Dec 6;298(5600):1999-2002.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Applied Biochemistry, Institute of Basic Medical Sciences, University of Tsukuba, Tsukuba Science City, Ibaraki 305-8572, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12471261" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Apoptosis ; Cytoplasm/enzymology ; Female ; Gene Expression Regulation, Developmental ; Gene Targeting ; In Situ Nick-End Labeling ; Male ; Mice ; Mice, Inbred C57BL ; Mutation ; Nuclear Proteins/genetics/metabolism ; Organ Size ; Poly A/metabolism ; Polynucleotide Adenylyltransferase/genetics/*metabolism ; Protein Biosynthesis ; RNA, Messenger/*metabolism ; Spermatids/physiology ; Spermatocytes/physiology ; *Spermatogenesis ; Spermatozoa/*physiology ; Testis/*enzymology/metabolism ; Transcription Factors/genetics/metabolism ; Transcription, Genetic ; mRNA Cleavage and Polyadenylation Factors/genetics/metabolism
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  • 75
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-16
    Description: GSK3/SHAGGY is a highly conserved serine/threonine kinase implicated in many signaling pathways in eukaryotes. Although many GSK3/SHAGGY-like kinases have been identified in plants, little is known about their functions in plant growth and development. Here we show that the Arabidopsis BRASSINOSTEROID-INSENSITIVE 2 (BIN2) gene encodes a GSK3/SHAGGY-like kinase. Gain-of-function mutations within its coding sequence or its overexpression inhibit brassinosteroid (BR) signaling, resulting in plants that resemble BR-deficient and BR-response mutants. In contrast, reduced BIN2 expression via cosuppression partially rescues a weak BR-signaling mutation. Thus, BIN2 acts as a negative regulator to control steroid signaling in plants.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Jianming -- Nam, Kyoung Hee -- GM60519/GM/NIGMS NIH HHS/ -- R01 GM060519/GM/NIGMS NIH HHS/ -- R01 GM060519-02/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 15;295(5558):1299-301.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109-1048, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847343" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Arabidopsis/*enzymology/genetics/growth & development/metabolism ; Arabidopsis Proteins/chemistry/*genetics/*metabolism ; Calcium-Calmodulin-Dependent Protein Kinases/chemistry ; Cloning, Molecular ; *Drosophila Proteins ; Genes, Plant ; Glycogen Synthase Kinase 3 ; Humans ; Molecular Sequence Data ; Mutation ; Phenotype ; Phosphorylation ; Plant Growth Regulators/*metabolism ; Plants, Genetically Modified ; Protein Kinases/chemistry/*genetics/*metabolism ; Protein-Serine-Threonine Kinases/chemistry ; Recombinant Fusion Proteins/metabolism ; Sequence Homology, Amino Acid ; *Signal Transduction ; Steroids/*metabolism
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  • 76
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-06-01
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pennisi, Elizabeth -- New York, N.Y. -- Science. 2002 May 31;296(5573):1601-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12040163" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Codon ; *Conserved Sequence ; DNA Transposable Elements ; *DNA, Intergenic ; *Evolution, Molecular ; Gene Expression Regulation ; Genes ; *Genome ; *Genome, Human ; Humans ; Mice/*genetics ; Mutation ; Regulatory Sequences, Nucleic Acid ; Sequence Analysis, DNA
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  • 77
    Publication Date: 2002-09-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gruber, Stephen B -- Ellis, Nathan A -- Scott, Karen K -- Almog, Ronit -- Kolachana, Prema -- Bonner, Joseph D -- Kirchhoff, Tomas -- Tomsho, Lynn P -- Nafa, Khedoudja -- Pierce, Heather -- Low, Marcelo -- Satagopan, Jaya -- Rennert, Hedy -- Huang, Helen -- Greenson, Joel K -- Groden, Joanna -- Rapaport, Beth -- Shia, Jinru -- Johnson, Stephen -- Gregersen, Peter K -- Harris, Curtis C -- Boyd, Jeff -- Rennert, Gad -- Offit, Kenneth -- R01CA81488/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2002 Sep 20;297(5589):2013.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departments of Internal Medicine and Epidemiology, University of Michigan, Ann Arbor, MI 48109, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12242432" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/*genetics ; Alleles ; Animals ; Bloom Syndrome/genetics ; Case-Control Studies ; Colorectal Neoplasms/*genetics ; DNA Helicases/*genetics ; Female ; Genes, APC ; *Genetic Predisposition to Disease ; *Heterozygote ; Humans ; Israel ; Jews/genetics ; Male ; Mice ; Mutation ; New York ; RecQ Helicases ; Risk Factors
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  • 78
    Publication Date: 2002-01-05
    Description: Spermatogenesis is a precisely regulated process in which the germ cells closely interact with Sertoli cells. The molecular basis of this cell-cell adhesion is unknown. Here, we demonstrate that targeted disruption of Man2a2, a gene encoding alpha-mannosidase IIx (MX), an enzyme that forms intermediate asparagine-linked carbohydrates (N-glycans), results in Man2a2 null males that are largely infertile. The Man2a2 null spermatogenic cells fail to adhere to Sertoli cells and are prematurely released from the testis to epididymis. We identified an N-glycan structure that plays a key role in germ cell-Sertoli cell adhesion and showed that a specific carbohydrate was required for spermatogenesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Akama, Tomoya O -- Nakagawa, Hiroaki -- Sugihara, Kazuhiro -- Narisawa, Sonoko -- Ohyama, Chikara -- Nishimura, Shin-Ichiro -- O'Brien, Deborah A -- Moremen, Kelley W -- Millan, Jose Luis -- Fukuda, Michiko N -- CA 42595/CA/NCI NIH HHS/ -- CA71932/CA/NCI NIH HHS/ -- GM47533/GM/NIGMS NIH HHS/ -- HD05863/HD/NICHD NIH HHS/ -- RR05351/RR/NCRR NIH HHS/ -- U54 HD035041/HD/NICHD NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 4;295(5552):124-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Glycobiology Program and, Stem Cell Program, The Burnham Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11778047" target="_blank"〉PubMed〈/a〉
    Keywords: Acetylglucosamine/metabolism ; Animals ; Cell Adhesion ; Cell Survival ; Crosses, Genetic ; Female ; Gene Targeting ; Glycopeptides/pharmacology ; Infertility, Male/etiology ; Lectins/metabolism ; Male ; Mannosidases/genetics/*metabolism ; Mice ; Mutation ; Oligosaccharides/metabolism ; *Plant Lectins ; Polysaccharides/biosynthesis/chemistry/*metabolism ; Sertoli Cells/*metabolism ; Spermatocytes/metabolism/physiology ; *Spermatogenesis ; Spermatozoa/*metabolism/physiology ; Testis/cytology/metabolism
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  • 79
    Publication Date: 2002-07-06
    Description: Drosophila host defense to fungal and Gram-positive bacterial infection is mediated by the Spaetzle/Toll/cactus gene cassette. It has been proposed that Toll does not function as a pattern recognition receptor per se but is activated through a cleaved form of the cytokine Spaetzle. The upstream events linking infection to the cleavage of Spaetzle have long remained elusive. Here we report the identification of a central component of the fungal activation of Toll. We show that ethylmethane sulfonate-induced mutations in the persephone gene, which encodes a previously unknown serine protease, block induction of the Toll pathway by fungi and resistance to this type of infection.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ligoxygakis, Petros -- Pelte, Nadege -- Hoffmann, Jules A -- Reichhart, Jean-Marc -- New York, N.Y. -- Science. 2002 Jul 5;297(5578):114-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut de Biologie Moleculaire et Cellulaire, UPR 9022 du CNRS, 15 rue R. Descartes, F67084 Strasbourg Cedex, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12098703" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Chromosome Mapping ; Drosophila/genetics/immunology/*metabolism/*microbiology ; Drosophila Proteins/*blood/chemistry/*genetics/*metabolism ; Escherichia coli/physiology ; Female ; Gene Expression Regulation ; Genes, Insect ; Gram-Positive Cocci/physiology ; Hemolymph/immunology/metabolism ; Hypocreales/*physiology ; Insect Proteins/genetics/metabolism ; Male ; Molecular Sequence Data ; Mutation ; Protein Sorting Signals ; Protein Structure, Tertiary ; Receptors, Cell Surface/genetics/*metabolism ; Serine Endopeptidases/*blood/chemistry/*genetics ; Toll-Like Receptors
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  • 80
    Publication Date: 2002-05-04
    Description: Huntington's disease (HD) is an inherited neurodegenerative disease caused by expansion of a polyglutamine tract in the huntingtin protein. Transcriptional dysregulation has been implicated in HD pathogenesis. Here, we report that huntingtin interacts with the transcriptional activator Sp1 and coactivator TAFII130. Coexpression of Sp1 and TAFII130 in cultured striatal cells from wild-type and HD transgenic mice reverses the transcriptional inhibition of the dopamine D2 receptor gene caused by mutant huntingtin, as well as protects neurons from huntingtin-induced cellular toxicity. Furthermore, soluble mutant huntingtin inhibits Sp1 binding to DNA in postmortem brain tissues of both presymptomatic and affected HD patients. Understanding these early molecular events in HD may provide an opportunity to interfere with the effects of mutant huntingtin before the development of disease symptoms.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dunah, Anthone W -- Jeong, Hyunkyung -- Griffin, April -- Kim, Yong-Man -- Standaert, David G -- Hersch, Steven M -- Mouradian, M Maral -- Young, Anne B -- Tanese, Naoko -- Krainc, Dimitri -- 5R37AG13617/AG/NIA NIH HHS/ -- AT00613/AT/NCCIH NIH HHS/ -- NS02174/NS/NINDS NIH HHS/ -- NS34361/NS/NINDS NIH HHS/ -- NS35255/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jun 21;296(5576):2238-43. Epub 2002 May 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Center for Aging, Genetics and Neurodegeneration, Charlestown, MA 02129, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11988536" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/metabolism ; Caudate Nucleus/metabolism ; Cell Death ; Cell Line ; Cell Nucleus/metabolism ; Cells, Cultured ; Corpus Striatum/cytology/embryology/metabolism ; DNA/*metabolism ; DNA-Binding Proteins/chemistry/*metabolism ; Down-Regulation ; Gene Expression Regulation ; Humans ; Huntington Disease/*genetics/metabolism ; Mice ; Mice, Transgenic ; Mutation ; Nerve Tissue Proteins/chemistry/genetics/*metabolism ; Neurons/physiology ; Nuclear Proteins/chemistry/genetics/*metabolism ; Peptides ; Promoter Regions, Genetic ; Rats ; Receptors, Dopamine D2/genetics ; Solubility ; Sp1 Transcription Factor/chemistry/*metabolism ; *TATA-Binding Protein Associated Factors ; *Transcription Factor TFIID ; Transcription Factors/chemistry/*metabolism ; *Transcription, Genetic ; Transfection ; Trinucleotide Repeat Expansion ; Two-Hybrid System Techniques
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  • 81
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-14
    Description: Cardiac injury in mammals and amphibians typically leads to scarring, with minimal regeneration of heart muscle. Here, we demonstrate histologically that zebrafish fully regenerate hearts within 2 months of 20% ventricular resection. Regeneration occurs through robust proliferation of cardiomyocytes localized at the leading epicardial edge of the new myocardium. The hearts of zebrafish with mutations in the Mps1 mitotic checkpoint kinase, a critical cell cycle regulator, failed to regenerate and formed scars. Thus, injury-induced cardiomyocyte proliferation in zebrafish can overcome scar formation, allowing cardiac muscle regeneration. These findings indicate that zebrafish will be useful for genetically dissecting the molecular mechanisms of cardiac regeneration.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Poss, Kenneth D -- Wilson, Lindsay G -- Keating, Mark T -- New York, N.Y. -- Science. 2002 Dec 13;298(5601):2188-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell Biology, Howard Hughes Medical Institute, Harvard Medical School, Children's Hospital, 320 Longwood Avenue, Boston, MA 02115, USA. kposs@enders.tch.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12481136" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blood Coagulation ; Bromodeoxyuridine/metabolism ; *Cell Division ; Collagen/analysis ; Fibrin ; Fibrosis ; Gene Expression Regulation ; Heart/*physiology ; Heart Injuries/pathology/physiopathology ; Heart Ventricles/pathology/surgery ; Mitosis ; Models, Biological ; Mutation ; Myocardial Contraction ; Myocardium/metabolism/pathology ; Myocytes, Cardiac/*physiology ; Protein-Serine-Threonine Kinases/genetics/physiology ; Protein-Tyrosine Kinases/genetics/physiology ; *Regeneration/genetics/physiology ; Time Factors ; Ventricular Function ; Zebrafish/genetics/*physiology ; *Zebrafish Proteins
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  • 82
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-10-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hastings, I M -- Bray, P G -- Ward, S A -- New York, N.Y. -- Science. 2002 Oct 4;298(5591):74-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK. hastings@liverpool.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12364772" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antimalarials/blood/*pharmacology/therapeutic use ; *Artemisinins ; Chloroquine/blood/*pharmacology/therapeutic use ; Drug Resistance/*genetics ; Drug Therapy, Combination ; Drug Tolerance ; Evolution, Molecular ; Genes, Protozoan ; Humans ; Malaria, Falciparum/drug therapy/parasitology ; Membrane Proteins/*genetics/physiology ; Membrane Transport Proteins ; Mutation ; Plasmodium falciparum/*drug effects/genetics/metabolism ; Protozoan Proteins/genetics/physiology ; Sesquiterpenes/pharmacology/therapeutic use ; Tetrahydrofolate Dehydrogenase/genetics
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  • 83
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-04-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hasty, Paul -- Vijg, Jan -- New York, N.Y. -- Science. 2002 May 17;296(5571):1250-1. Epub 2002 Apr 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Medicine, University of Texas Health Science Center, San Antonio, TX 78245, USA. hastye@uthscsa.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11951000" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Aging, Premature/*etiology/genetics ; Animals ; Apoptosis ; Cell Aging ; Crosses, Genetic ; *DNA Damage ; DNA Helicases/genetics/metabolism ; *DNA Repair ; DNA-Binding Proteins/genetics/metabolism ; Female ; Free Radicals/metabolism ; Hair Diseases/genetics ; Humans ; Male ; Mice ; Mice, Knockout ; Mutation ; Proteins/genetics/metabolism ; RNA-Binding Proteins/genetics/metabolism ; Reactive Oxygen Species/metabolism ; Transcription Factor TFIIH ; Transcription Factors/genetics/metabolism ; *Transcription Factors, TFII ; *Transcription, Genetic ; Tumor Suppressor Protein p53/genetics/metabolism ; Xeroderma Pigmentosum Group A Protein ; Xeroderma Pigmentosum Group D Protein
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  • 84
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-03-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hatfull, Graham F -- New York, N.Y. -- Science. 2002 Mar 15;295(5562):2031-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA. gfh@imap.pit.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11896263" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Outer Membrane Proteins/genetics/metabolism ; Bacteriophages/*genetics/*physiology ; Bordetella/genetics/pathogenicity/*virology ; Genes, Bacterial ; Genes, Viral ; Genetic Variation ; Genome, Viral ; Mutation ; Phenotype ; RNA-Directed DNA Polymerase/genetics/*metabolism ; Receptors, Virus/genetics/metabolism ; Repetitive Sequences, Nucleic Acid ; Templates, Genetic ; Virulence ; *Virulence Factors, Bordetella
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  • 85
    Publication Date: 2002-10-05
    Description: In tropical Africa, Anopheles funestus is one of the three most important malaria vectors. We physically mapped 157 A. funestus complementary DNAs (cDNAs) to the polytene chromosomes of this species. Sequences of the cDNAs were mapped in silico to the A. gambiae genome as part of a comparative genomic study of synteny, gene order, and sequence conservation between A. funestus and A. gambiae. These species are in the same subgenus and diverged about as recently as humans and chimpanzees. Despite nearly perfect preservation of synteny, we found substantial shuffling of gene order along corresponding chromosome arms. Since the divergence of these species, at least 70 chromosomal inversions have been fixed, the highest rate of rearrangement of any eukaryote studied to date. The high incidence of paracentric inversions and limited colinearity suggests that locating genes in one anopheline species based on gene order in another may be limited to closely related taxa.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sharakhov, Igor V -- Serazin, Andrew C -- Grushko, Olga G -- Dana, Ali -- Lobo, Neil -- Hillenmeyer, Maureen E -- Westerman, Richard -- Romero-Severson, Jeanne -- Costantini, Carlo -- Sagnon, N'Fale -- Collins, Frank H -- Besansky, Nora J -- AI48842/AI/NIAID NIH HHS/ -- U01 AI48846/AI/NIAID NIH HHS/ -- U01 AI50687/AI/NIAID NIH HHS/ -- New York, N.Y. -- Science. 2002 Oct 4;298(5591):182-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Tropical Disease Research and Training, University of Notre Dame, Notre Dame, IN 46556-0369, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12364797" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anopheles/classification/*genetics ; *Chromosome Inversion ; Chromosomes/genetics ; Conserved Sequence ; DNA, Complementary ; Evolution, Molecular ; Expressed Sequence Tags ; *Gene Order ; Gene Rearrangement ; *Genes, Insect ; Genetic Linkage ; In Situ Hybridization, Fluorescence ; Molecular Sequence Data ; Mutation ; Physical Chromosome Mapping ; Species Specificity ; Synteny
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  • 86
    Publication Date: 2002-04-20
    Description: Current techniques for three-dimensional (3D) optical microscopy (deconvolution, confocal microscopy, and optical coherence tomography) generate 3D data by "optically sectioning" the specimen. This places severe constraints on the maximum thickness of a specimen that can be imaged. We have developed a microscopy technique that uses optical projection tomography (OPT) to produce high-resolution 3D images of both fluorescent and nonfluorescent biological specimens with a thickness of up to 15 millimeters. OPT microscopy allows the rapid mapping of the tissue distribution of RNA and protein expression in intact embryos or organ systems and can therefore be instrumental in studies of developmental biology or gene function.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sharpe, James -- Ahlgren, Ulf -- Perry, Paul -- Hill, Bill -- Ross, Allyson -- Hecksher-Sorensen, Jacob -- Baldock, Richard -- Davidson, Duncan -- MC_U127527203/Medical Research Council/United Kingdom -- New York, N.Y. -- Science. 2002 Apr 19;296(5567):541-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Medical Research Council, Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, UK. james.sharpe@hgu.mrc.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11964482" target="_blank"〉PubMed〈/a〉
    Keywords: Anatomy, Cross-Sectional ; Animals ; DNA-Binding Proteins/analysis ; Embryo, Mammalian/*anatomy & histology/*metabolism ; Embryonic and Fetal Development ; Fluorescent Antibody Technique ; Gene Expression ; Gene Expression Profiling/instrumentation/*methods ; Hepatocyte Nuclear Factor 3-beta ; *Image Processing, Computer-Assisted ; Immunohistochemistry ; In Situ Hybridization ; Magnetic Resonance Imaging ; Mice ; Microscopy/instrumentation/*methods ; Microscopy, Fluorescence/instrumentation/*methods ; Mutation ; Nervous System/embryology ; Neurofilament Proteins/analysis ; Nuclear Proteins/analysis ; Software ; Stomach/embryology ; *Tomography ; *Transcription Factors
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  • 87
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-04-16
    Description: Multiple environmental and endogenous inputs regulate when plants flower. The molecular genetic dissection of flowering time control in Arabidopsis has identified an integrated network of pathways that quantitatively control the timing of this developmental switch. This framework provides the basis to understand the evolution of different reproductive strategies and how floral pathways interact through seasonal progression.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Simpson, Gordon G -- Dean, Caroline -- New York, N.Y. -- Science. 2002 Apr 12;296(5566):285-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell and Developmental Biology, John Innes Centre, Norwich, NR4 7UH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11951029" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/genetics/growth & development/*physiology ; Arabidopsis Proteins/genetics/*metabolism ; Circadian Rhythm ; DNA-Binding Proteins/genetics/physiology ; *Gene Expression Regulation, Plant ; Genes, Plant ; Gibberellins/metabolism ; Meristem/physiology ; Mutation ; Photoperiod ; Plant Structures/physiology ; Seasons ; Temperature ; Time Factors ; Transcription Factors/genetics/physiology
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  • 88
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-11-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Morell, Virginia -- New York, N.Y. -- Science. 2002 Nov 1;298(5595):945.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12411679" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; *Cyprinodontiformes/anatomy & histology/classification/genetics/physiology ; DNA, Mitochondrial/genetics ; Female ; *Models, Animal ; Mutation ; Phylogeny ; *Placenta/anatomy & histology/physiology ; Species Specificity
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  • 89
    Publication Date: 2002-01-19
    Description: The separate components of nucleocytoplasmic transport have been well characterized, including the key regulatory role of Ran, a guanine nucleotide triphosphatase. However, the overall system behavior in intact cells is difficult to analyze because the dynamics of these components are interdependent. We used a combined experimental and computational approach to study Ran transport in vivo. The resulting model provides the first quantitative picture of Ran flux between the nuclear and cytoplasmic compartments in eukaryotic cells. The model predicts that the Ran exchange factor RCC1, and not the flux capacity of the nuclear pore complex (NPC), is the crucial regulator of steady-state flux across the NPC. Moreover, it provides the first estimate of the total in vivo flux (520 molecules per NPC per second and predicts that the transport system is robust.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Smith, Alicia E -- Slepchenko, Boris M -- Schaff, James C -- Loew, Leslie M -- Macara, Ian G -- GM-50526/GM/NIGMS NIH HHS/ -- NCRR-RR13186/RR/NCRR NIH HHS/ -- NIH-GM-20438/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 18;295(5554):488-91.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Cell Signaling, Department of Pharmacology, University of Virginia, Charlottesville, VA 22908, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11799242" target="_blank"〉PubMed〈/a〉
    Keywords: Active Transport, Cell Nucleus ; Animals ; *Cell Cycle Proteins ; Cell Line ; Cell Nucleus/metabolism ; *Computer Simulation ; Cricetinae ; Cytoplasm/metabolism ; Diffusion ; Fluorescence ; Guanine Nucleotide Exchange Factors/metabolism ; Guanosine Triphosphate/metabolism ; Kinetics ; Mathematics ; *Models, Biological ; Mutation ; Nuclear Pore/*metabolism ; *Nuclear Proteins ; Nucleocytoplasmic Transport Proteins/metabolism ; Recombinant Proteins/metabolism ; Temperature ; ran GTP-Binding Protein/genetics/*metabolism
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  • 90
    Publication Date: 2002-12-03
    Description: N-linked protein glycosylation is the most abundant posttranslation modification of secretory proteins in eukaryotes. A wide range of functions are attributed to glycan structures covalently linked to asparagine residues within the asparagine-X-serine/threonine consensus sequence (Asn-Xaa-Ser/Thr). We found an N-linked glycosylation system in the bacterium Campylobacter jejuni and demonstrate that a functional N-linked glycosylation pathway could be transferred into Escherichia coli. Although the bacterial N-glycan differs structurally from its eukaryotic counterparts, the cloning of a universal N-linked glycosylation cassette in E. coli opens up the possibility of engineering permutations of recombinant glycan structures for research and industrial applications.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wacker, Michael -- Linton, Dennis -- Hitchen, Paul G -- Nita-Lazar, Mihai -- Haslam, Stuart M -- North, Simon J -- Panico, Maria -- Morris, Howard R -- Dell, Anne -- Wren, Brendan W -- Aebi, Markus -- New York, N.Y. -- Science. 2002 Nov 29;298(5599):1790-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Microbiology, Department of Biology, Swiss Federal Institute of Technology, Zurich, CH-8092 Zurich, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12459590" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Proteins/chemistry/genetics/isolation & purification/*metabolism ; Campylobacter jejuni/genetics/*metabolism ; Carbohydrate Conformation ; *Cloning, Molecular ; Conjugation, Genetic ; Consensus Sequence ; Escherichia coli/*genetics/metabolism ; *Escherichia coli Proteins ; Genes, Bacterial ; Genetic Complementation Test ; Glycoproteins/chemistry/*metabolism ; Glycosylation ; Glycosyltransferases/genetics/metabolism ; Lipoproteins/genetics/isolation & purification/metabolism ; Mass Spectrometry ; Membrane Transport Proteins ; Models, Biological ; Mutation ; Polysaccharides, Bacterial/biosynthesis ; Recombinant Proteins/chemistry/isolation & purification ; Transformation, Bacterial
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  • 91
    Publication Date: 2002-11-16
    Description: Lymphoma cells infected with Kaposi's sarcoma-associated herpesvirus are autocrine dependent on virus-derived interleukin-6 (IL-6), but not on cellular IL-6. During viral infection, host cells induce the antiviral factor interferon (IFN) to up-regulate p21, initiate cell cycle arrest, and inhibit virus replication. Viral IL-6, however, blocks IFN signaling. A viral transcriptional program exists in which only the viral IL-6 gene is directly activated by IFN-alpha, allowing the virus to modify its cellular environment by sensing and responding to levels of intracellular IFN signaling. The human cytokine cannot mimic this effect because IFN-alpha down-regulates the IL-6 receptor, gp80. Viral IL-6 bypasses the gp80 regulatory checkpoint by binding directly to the gp130 transducer molecule, resulting in tumor cell autocrine dependence on the viral cytokine for proliferation and survival.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chatterjee, Malini -- Osborne, Julie -- Bestetti, Giovanna -- Chang, Yuan -- Moore, Patrick S -- CA76586/CA/NCI NIH HHS/ -- CA87661/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2002 Nov 15;298(5597):1432-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12434062" target="_blank"〉PubMed〈/a〉
    Keywords: Antigens, CD/genetics/metabolism ; Autocrine Communication ; *Cell Division ; Cytokine Receptor gp130 ; Down-Regulation ; Feedback, Physiological ; Genes, Viral ; Herpesvirus 8, Human/genetics/immunology/*physiology ; Humans ; Interferon-alpha/pharmacology/*physiology ; Interleukin-6/genetics/*physiology ; Membrane Glycoproteins/genetics/metabolism ; Mutation ; Promoter Regions, Genetic ; Receptors, Interleukin-6/genetics/metabolism ; Signal Transduction ; Tetradecanoylphorbol Acetate/pharmacology ; Transcription, Genetic ; Tumor Cells, Cultured ; Up-Regulation
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  • 92
    Publication Date: 2002-02-16
    Description: The Nedd8 ubiquitin-like protein modification pathway regulates cell-cycle progression. Our analysis of Nedd8 requirements during Caenorhabditis elegans embryogenesis indicates that the cytoskeleton is another target. Nedd8 conjugation negatively regulated contractility of the microfilament-rich cell cortex during pronuclear migration and again during cytokinesis. The Nedd8 pathway also was required after meiosis to negatively regulate katanin, a microtubule-severing complex, permitting the assembly of a large mitotic spindle. We propose that Nedd8-modified cullin, as part of an E3 ubiquitin ligase complex, targets katanin for degradation during the transition from meiosis to mitosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kurz, Thimo -- Pintard, Lionel -- Willis, John H -- Hamill, Danielle R -- Gonczy, Pierre -- Peter, Matthias -- Bowerman, Bruce -- R01GM58017/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 15;295(5558):1294-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Molecular Biology, University of Oregon, Eugene, OR 97403, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11847342" target="_blank"〉PubMed〈/a〉
    Keywords: Actin Cytoskeleton/*physiology/ultrastructure ; Adenosine Triphosphatases/genetics/*metabolism ; Animals ; Caenorhabditis elegans/*embryology/genetics/metabolism ; Caenorhabditis elegans Proteins/genetics/*metabolism ; Cell Cycle Proteins/genetics/metabolism ; Cell Division ; Cell Membrane/ultrastructure ; Cell Nucleus/physiology/ultrastructure ; *Cullin Proteins ; Embryo, Nonmammalian/metabolism ; Genes, Helminth ; Meiosis ; Microtubules/drug effects/*physiology/ultrastructure ; Mitosis ; Mutation ; Nocodazole/pharmacology ; RNA, Helminth/genetics ; Spindle Apparatus/physiology/ultrastructure ; Ubiquitins/genetics/*metabolism
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  • 93
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-06-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Couzin, Jennifer -- New York, N.Y. -- Science. 2002 Jun 28;296(5577):2314-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12089416" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Apoptosis ; Blood Vessels/pathology ; Genetic Therapy/*methods ; Mice ; Mutation ; *Nanotechnology ; Neoplasm Metastasis ; Neoplasm Transplantation ; Neoplasms, Experimental/blood supply/pathology/*therapy ; Neovascularization, Pathologic/*therapy ; Patents as Topic ; Proto-Oncogene Proteins c-raf/*genetics/metabolism ; Receptors, Vitronectin/metabolism
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  • 94
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-04-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marx, Jean -- New York, N.Y. -- Science. 2002 Apr 26;296(5568):686-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11976439" target="_blank"〉PubMed〈/a〉
    Keywords: Adipocytes/metabolism ; Adult ; Animals ; Child ; Diabetes Mellitus/epidemiology/etiology/genetics/metabolism ; Diabetes Mellitus, Type 2/epidemiology/*etiology/*genetics/metabolism ; Disease Susceptibility ; Genetic Predisposition to Disease ; Glucose/metabolism ; Humans ; Insulin/*metabolism/secretion ; Insulin Resistance ; Islets of Langerhans/metabolism/physiology ; Life Style ; Mice ; Muscles/metabolism ; Mutation ; Obesity/metabolism/physiopathology ; Risk Factors
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  • 95
    Publication Date: 2002-01-19
    Description: Sympathetic nervous system (SNS) regulation of cardiac action potential duration (APD) is mediated by beta adrenergic receptor (betaAR) activation, which increases the slow outward potassium ion current (IKS). Mutations in two human I(KS) channel subunits, hKCNQ1 and hKCNE1, prolong APD and cause inherited cardiac arrhythmias known as LQTS (long QT syndrome). We show that betaAR modulation of I(KS) requires targeting of adenosine 3',5'-monophosphate (cAMP)-dependent protein kinase (PKA) and protein phosphatase 1 (PP1) to hKCNQ1 through the targeting protein yotiao. Yotiao binds to hKCNQ1 by a leucine zipper motif, which is disrupted by an LQTS mutation (hKCNQ1-G589D). Identification of the hKCNQ1 macromolecular complex provides a mechanism for SNS modulation of cardiac APD through IKS.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marx, Steven O -- Kurokawa, Junko -- Reiken, Steven -- Motoike, Howard -- D'Armiento, Jeanine -- Marks, Andrew R -- Kass, Robert S -- P01HL67849-01/HL/NHLBI NIH HHS/ -- R01-AI39794/AI/NIAID NIH HHS/ -- R01-HL44365-07/HL/NHLBI NIH HHS/ -- R01-HL56180/HL/NHLBI NIH HHS/ -- R01-HL56810-05/HL/NHLBI NIH HHS/ -- R01-HL61503/HL/NHLBI NIH HHS/ -- R01-HL68093/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 18;295(5554):496-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, Center for Molecular Cardiology, Department of Medicine, College of Physicians and Surgeons of Columbia University, New York, NY 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11799244" target="_blank"〉PubMed〈/a〉
    Keywords: 8-Bromo Cyclic Adenosine Monophosphate/pharmacology ; A Kinase Anchor Proteins ; Action Potentials ; *Adaptor Proteins, Signal Transducing ; Amino Acid Substitution ; Animals ; CHO Cells ; Carrier Proteins/*metabolism ; Cricetinae ; Cyclic AMP/metabolism ; Cyclic AMP-Dependent Protein Kinases/*metabolism ; Cytoskeletal Proteins/*metabolism ; Humans ; KCNQ Potassium Channels ; KCNQ1 Potassium Channel ; Leucine Zippers ; Macromolecular Substances ; Mice ; Mice, Transgenic ; Mutation ; Myocardium/cytology/*metabolism ; Phosphoprotein Phosphatases/*metabolism ; Phosphorylation ; Potassium/metabolism ; Potassium Channels/chemistry/genetics/*metabolism ; *Potassium Channels, Voltage-Gated ; Protein Phosphatase 1 ; Receptors, Adrenergic, beta/*metabolism ; Recombinant Fusion Proteins/chemistry/metabolism ; Signal Transduction
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  • 96
    Publication Date: 2002-04-20
    Description: Aquaporins are transmembrane channels found in cell membranes of all life forms. We examine their apparently paradoxical property, facilitation of efficient permeation of water while excluding protons, which is of critical importance to preserving the electrochemical potential across the cell membrane. We have determined the structure of the Escherichia coli aquaglyceroporin GlpF with bound water, in native (2.7 angstroms) and in W48F/F200T mutant (2.1 angstroms) forms, and carried out 12-nanosecond molecular dynamics simulations that define the spatial and temporal probability distribution and orientation of a single file of seven to nine water molecules inside the channel. Two conserved asparagines force a central water molecule to serve strictly as a hydrogen bond donor to its neighboring water molecules. Assisted by the electrostatic potential generated by two half-membrane spanning loops, this dictates opposite orientations of water molecules in the two halves of the channel, and thus prevents the formation of a "proton wire," while permitting rapid water diffusion. Both simulations and observations revealed a more regular distribution of channel water and an increased water permeability for the W48F/F200T mutant.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tajkhorshid, Emad -- Nollert, Peter -- Jensen, Morten O -- Miercke, Larry J W -- O'Connell, Joseph -- Stroud, Robert M -- Schulten, Klaus -- New York, N.Y. -- Science. 2002 Apr 19;296(5567):525-30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Theoretical Biophysics Group, Beckman Institute, University of Illinois at Urbana-Champaign, 405 North Mathews, Urbana, IL 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11964478" target="_blank"〉PubMed〈/a〉
    Keywords: Aquaporins/*chemistry/genetics/metabolism ; Asparagine/chemistry ; Chemistry, Physical ; Computer Simulation ; Crystallography, X-Ray ; Diffusion ; Electrochemistry ; Escherichia coli ; Escherichia coli Proteins/*chemistry/genetics/metabolism ; Glycerol/metabolism ; Hydrogen Bonding ; Models, Molecular ; Mutation ; Physicochemical Phenomena ; Protein Conformation ; Protein Structure, Secondary ; Protons ; Static Electricity ; Water/chemistry/*metabolism
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  • 97
    Publication Date: 2002-01-19
    Description: Protein-protein interactions and calcium entry through the N-methyl-d-aspartate (NMDA)-type glutamate receptor regulate synaptic development and plasticity in the central nervous system. The EphB receptor tyrosine kinases are localized at excitatory synapses where they cluster and associate with NMDA receptors. We identified a mechanism whereby EphBs modulate NMDA receptor function. EphrinB2 activation of EphB in primary cortical neurons potentiates NMDA receptor-dependent influx of calcium. Treatment of cells with ephrinB2 led to NMDA receptor tyrosine phosphorylation through activation of the Src family of tyrosine kinases. These ephrinB2-dependent events result in enhanced NMDA receptor-dependent gene expression. Our findings indicate that ephrinB2 stimulation of EphB modulates the functional consequences of NMDA receptor activation and suggest a mechanism whereby activity-independent and activity-dependent signals converge to regulate the development and remodeling of synaptic connections.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Takasu, Mari A -- Dalva, Matthew B -- Zigmond, Richard E -- Greenberg, Michael E -- CA43855/CA/NCI NIH HHS/ -- HD18655/HD/NICHD NIH HHS/ -- NS12651/NS/NINDS NIH HHS/ -- NS17512/NS/NINDS NIH HHS/ -- R01 NS045500/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 18;295(5554):491-5. Epub 2001 Dec 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Neuroscience, Children's Hospital, and the Department of Neurobiology, Harvard Medical School, 300 Longwood Avenue, Boston, MA 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11799243" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain-Derived Neurotrophic Factor/pharmacology ; Calcium/*metabolism ; Cell Line ; Cells, Cultured ; Cerebral Cortex/cytology/embryology ; Cyclic AMP Response Element-Binding Protein/metabolism ; Ephrin-B2 ; *Gene Expression Regulation ; Genes, Reporter ; Glutamic Acid/metabolism ; Humans ; Immunoglobulin Fc Fragments ; Membrane Proteins/*metabolism/pharmacology ; Models, Neurological ; Mutation ; Neurons/*metabolism ; Phosphorylation ; Phosphotyrosine/metabolism ; Proto-Oncogene Proteins/metabolism ; Proto-Oncogene Proteins c-fyn ; Rats ; Receptor Protein-Tyrosine Kinases/chemistry/genetics/*metabolism ; Receptor, EphB4 ; Receptors, Eph Family ; Receptors, N-Methyl-D-Aspartate/genetics/*metabolism ; Recombinant Fusion Proteins/metabolism/pharmacology ; Signal Transduction ; Synapses/metabolism ; Transcription, Genetic ; src-Family Kinases/metabolism
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  • 98
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-06-18
    Description: A broad range of neurodegenerative disorders is characterized by neuronal damage that may be caused by toxic, aggregation-prone proteins. As genes are identified for these disorders and cell culture and animal models are developed, it has become clear that a major effect of mutations in these genes is the abnormal processing and accumulation of misfolded protein in neuronal inclusions and plaques. Increased understanding of the cellular mechanisms for disposal of abnormal proteins and of the effects of toxic protein accumulation on neuronal survival may allow the development of rational, effective treatment for these disorders.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Taylor, J Paul -- Hardy, John -- Fischbeck, Kenneth H -- New York, N.Y. -- Science. 2002 Jun 14;296(5575):1991-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Neurogenetics Branch, National Institute of Neurological Disorders and Stroke, Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, MD 20892, USA. taylorjp@ninds.nih.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12065827" target="_blank"〉PubMed〈/a〉
    Keywords: Alzheimer Disease/genetics/metabolism/pathology/therapy ; Amyotrophic Lateral Sclerosis/genetics/metabolism/pathology/therapy ; Animals ; Humans ; Inclusion Bodies/metabolism ; Mutation ; Neurodegenerative Diseases/genetics/*metabolism/pathology/therapy ; Neurons/*metabolism/pathology ; Parkinson Disease/genetics/metabolism/pathology/therapy ; Peptides/genetics/metabolism ; Prion Diseases/genetics/metabolism/pathology/therapy ; Protein Folding ; Proteins/chemistry/genetics/*metabolism ; Tauopathies/metabolism/pathology/therapy ; Trinucleotide Repeat Expansion
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 99
    Publication Date: 2002-02-09
    Description: DNA methylation of tumor suppressor genes is a frequent mechanism of transcriptional silencing in cancer. The molecular mechanisms underlying the specificity of methylation are unknown. We report here that the leukemia-promoting PML-RAR fusion protein induces gene hypermethylation and silencing by recruiting DNA methyltransferases to target promoters and that hypermethylation contributes to its leukemogenic potential. Retinoic acid treatment induces promoter demethylation, gene reexpression, and reversion of the transformed phenotype. These results establish a mechanistic link between genetic and epigenetic changes during transformation and suggest that hypermethylation contributes to the early steps of carcinogenesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Di Croce, Luciano -- Raker, Veronica A -- Corsaro, Massimo -- Fazi, Francesco -- Fanelli, Mirco -- Faretta, Mario -- Fuks, Francois -- Lo Coco, Francesco -- Kouzarides, Tony -- Nervi, Clara -- Minucci, Saverio -- Pelicci, Pier Giuseppe -- New York, N.Y. -- Science. 2002 Feb 8;295(5557):1079-82.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Experimental Oncology, European Institute of Oncology, Milan, Italy. ldicroce@lar.ieo.it〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11834837" target="_blank"〉PubMed〈/a〉
    Keywords: Azacitidine/*analogs & derivatives/pharmacology ; Binding Sites ; Cell Differentiation/drug effects ; Cell Line ; Cell Nucleus/metabolism ; Cell Transformation, Neoplastic ; Cloning, Molecular ; CpG Islands ; DNA (Cytosine-5-)-Methyltransferase/*metabolism ; *DNA Methylation ; Exons ; Gene Expression ; *Gene Silencing ; Histone Deacetylases/metabolism ; Humans ; Leukemia, Promyelocytic, Acute/genetics ; Mutation ; Neoplasm Proteins/*metabolism ; Oncogene Proteins, Fusion/*metabolism ; *Promoter Regions, Genetic ; Receptors, Retinoic Acid/*genetics ; Recombinant Fusion Proteins/metabolism ; Transcription Factors/metabolism ; Tretinoin/pharmacology ; Tumor Cells, Cultured ; Zinc/pharmacology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 100
    Publication Date: 2002-10-26
    Description: Catecholamines signal through the beta2-adrenergic receptor by promoting production of the second messenger adenosine 3',5'-monophosphate (cAMP). The magnitude of this signal is restricted by desensitization of the receptors through their binding to beta-arrestins and by cAMP degradation by phosphodiesterase (PDE) enzymes. We show that beta-arrestins coordinate both processes by recruiting PDEs to activated beta2-adrenergic receptors in the plasma membrane of mammalian cells. In doing so, the beta-arrestins limit activation of membrane-associated cAMP-activated protein kinase by simultaneously slowing the rate of cAMP production through receptor desensitization and increasing the rate of its degradation at the membrane.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Perry, Stephen J -- Baillie, George S -- Kohout, Trudy A -- McPhee, Ian -- Magiera, Maria M -- Ang, Kok Long -- Miller, William E -- McLean, Alison J -- Conti, Marco -- Houslay, Miles D -- Lefkowitz, Robert J -- HD20788/HD/NICHD NIH HHS/ -- HL16037/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2002 Oct 25;298(5594):834-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12399592" target="_blank"〉PubMed〈/a〉
    Keywords: 3',5'-Cyclic-AMP Phosphodiesterases/genetics/metabolism ; Adrenergic beta-Agonists/pharmacology ; Animals ; Arrestins/genetics/*metabolism ; COS Cells ; Cell Line ; Cell Membrane/metabolism ; Cyclic AMP/*metabolism ; Cyclic AMP-Dependent Protein Kinases/metabolism ; Cyclic Nucleotide Phosphodiesterases, Type 4 ; Cytosol/metabolism ; Humans ; Isoenzymes/metabolism ; Isoproterenol/pharmacology ; Mice ; Mutation ; Precipitin Tests ; Rats ; Receptors, Adrenergic, beta-2/genetics/*metabolism ; Recombinant Fusion Proteins/metabolism ; Transfection
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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