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  • Articles  (277)
  • Kinetics
  • American Association for the Advancement of Science (AAAS)  (236)
  • Springer  (41)
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  • 2000-2004  (108)
  • 1980-1984  (169)
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  • Articles  (277)
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  • American Association for the Advancement of Science (AAAS)  (236)
  • Springer  (41)
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  • 1
    Electronic Resource
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    Springer
    Colloid & polymer science 260 (1982), S. 641-642 
    ISSN: 1435-1536
    Keywords: Kinetics ; Nucleation ; Water ; Emulsion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 2
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    Colloid & polymer science 262 (1984), S. 677-682 
    ISSN: 1435-1536
    Keywords: Kinetics ; methacrylamide ; reaction scheme ; viscosity ; additives
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract The aqueous polymerization of methacrylamide initiated by potassiumpersulfate-L-cystein hydrochloride redox system has been studied at 35±0.01
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  • 3
    ISSN: 1434-4475
    Keywords: Acetanilide ; Bromination ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The kinetics of the bromination of acetanilide has been studied with the diffusion layer titration method. The results have been obtained using the apparatus which consists of the ring-disc electrode and an amperostat-potentiostat system. Dependence of the ring current on the disc current has been determined as a function of rotation speeds of the electrode, of the solution concentration and temperature. It has been shown the bromination reaction of acetanilide exhibits by first order kinetics. In that case Br2 and Br3 − are the brominating species. The rate of bromination changes with the concentration of the Br− ions. This reaction rate depends on reactions of molecular bromine with acetanilide. For 0.033〈[Br−]〈0.173M the rate constant changes in the following range: $$17530M^{ - 1} s^{ - 1}〈 k〈 6400M^{ - 1} s^{ - 1} ([H + ] = 1,34;T = 298K)$$
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  • 4
    ISSN: 1434-4475
    Keywords: Kinetics ; Mechanism ; Mononitrosopiperazine ; N-Nitrosation ; Piperazine
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Der Mechanismus der Bildung vonN-Nitroso-Verbindungen, die als potentielle carcinogene Substanzen gelten, wurde untersucht. Die Kinetik der Nitrosierung von Piperazin (PIP) in wäßriger Perchlorsäurelösung wurde mittels einer differentiellen spektrophotometrischen Methode verfolgt. Es ergab sich für denpH-Bereich 0,85–4,36 folgendes Zeitgesetz: $$v_0 = \left[ {nitrite} \right]_0 2 \left[ {PIP} \right]_0 /\left( {1 + f/\left[ {H^ + } \right]} \right)^2 \left( {g \left[ {PIP} \right]_0 + h + j\left[ {H^ \div } \right]} \right)$$ wobei [Nitrit]0 und [PIP]0 die anfänglichen stöchiometrischen Konzentrationen bedeuten. Bei 298,2 K und μ=1,0M,f=(1,17±0,11) 10−3 M,g=(3,5±0,7)·10−2 M s,h=2,6·10−6 M 2 s andj=(0,95±0,04)M s. Bei Erhöhung der Acidität ([HClO4]≥1M) tritt ein neuer kinetischer Term auf: $$v_0 ' = p\left[ {Nitrit} \right]_0 \left[ {PIP} \right]_0 $$ Bei 298,2 K und μ=3,0M,p=(1,9±0,2) 10−3 M −1 s−1. Es wird ein genereller Mechanismus für die Nitrosierung jedesN-nitrosierbaren Substrates in wäßriger Perchloratlösung vorgeschlagen, wobei als nitrosierende Agentien ausschließlich N2O3 und H2NO2 +/NO+ auftreten. Es werden die Besonderheiten dieses Mechanismus bezüglich derpK-Werte derN-nitrosierbaren Substrate diskutiert.
    Notes: Abstract The mechanism of formation ofN-nitroso compounds, which are considered as potential chemical carcinogens was studied. The kinetics of nitrosation of piperazine (PIP) in aqueous solution of perchloric acid have been investigated using a differential spectrophotometric technique. Based on our experimental results, the following rate law, in thepH-range 0.85 4.36, is proposed: $$v_0 = \left[ {nitrite} \right]_0 2 \left[ {PIP} \right]_0 /\left( {1 + f/\left[ {H^ + } \right]} \right)^2 \left( {g \left[ {PIP} \right]_0 + h + j\left[ {H^ \div } \right]} \right)$$ where [nitrite]0 and [PIP]0 represent initial stoichiometric concentrations. At 298.2K and μ=1.0M,f=(1.17±0.11) 10−3 M,g=(3.5±0.7) 10−2 M s,h=2.6×10−6 M 2 s andj=(0.95±0.04)M s. When the acidity is increased ([HClO4]≥1M), a new kinetic term comes into play: $$v_0 ' = p\left[ {nitrite} \right]_0 \left[ {PIP} \right]_0 $$ At 298.2 K and μ=3.0M,p=(1.9±0.2) 10−3 M −1 s−1. A general mechanism for the nitrosation of anyN-nitrosable substrate in aqueous perchloric solution in which the only nitrosating agents are N2O3 and H2NO2 +/NO+ is proposed. Also, the various particularities of this mechanism, according to thepK of theN-nitrosable substrate, are discussed.
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  • 5
    ISSN: 1434-4475
    Keywords: Galactitol ; Kinetics ; Mechanism ; Oxidation ; Reduction ; Xylitol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Das Geschwindigkeitsgesetz der Titelreaktion ist in beiden Fällen erster Ordnung bezüglich Hexacyanoferrat(III). Die Oxidation ist erster Ordnung bei niedrigen Konzentrationen von Xylit und Galaktit und geht bei Erhöhung der Konzentration gegen null. In gleicher Weise wurde eine Kinetik erster Ordnung bezüglich Hydroxyl bei niedrigen Konzentrationen und eine erniedrigte Ordnung bei höheren Konzentrationen für die Oxidation von Xylit beobachtet; bei Galaktit bleibt die Oxidation auch bei höheren Hydroxyl-Konzentrationen erster Ordnung. Es wird angenommen, daß die Reaktion über einen aktivierten Komplex zwischen [KFe(CN)6]2− und dem Substrat-Anion verläuft; dieser Komplex zerfällt in [KFe(CN)6]3− und ein Substrat-Radikal. Ein möglicher Reaktionsmechanismus wird vorgeschlagen.
    Notes: Abstract Kinetics of oxidation of xylitol and galactitol by hexacyanoferrate(III) ion in aqueous alkaline medium is reported. The reaction rate is of first order with respect to hexacyanoferrate(III) in each substrate. The reaction is first order at lower concentrations of xylitol and galactitol and tends towards zero order as the concentration increases. Similarly first order kinetics was obtained with respect to hydroxide ion at lower concentrations and tends to lower order at higher concentration in the oxidation of xylitol; in the oxidation of galactitol the reaction is first order with respect to hydroxide ion even up to manyfold variation. The course of reaction has been considered to proceed through the formation of an activated complex between [K Fe(CN)6]2− and substrate anion which decomposes slowly into radical and [K Fe(CN)6]3−. A probable reaction mechanism is proposed.
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  • 6
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    Monatshefte für Chemie 112 (1981), S. 287-292 
    ISSN: 1434-4475
    Keywords: Activation energy ; Kinetics ; Methyl-vinyl ketone ; Polarography ; Polymerization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The homogeneous polymerization of methyl-vinyl ketone in diluted methanol solutions in presence of proton donors is studied using the polarographic method. The effect of the cation of the indifferent electrolyte is investigated as well as the influence of small quantities of H2O. Suggestions were made about the possible mechanisms of these influences in the general scheme of the process proposed byHolleck et al.
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  • 7
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    Monatshefte für Chemie 113 (1982), S. 1087-1092 
    ISSN: 1434-4475
    Keywords: Dissolution ; Kinetics ; Pyrrhotite ; Rotating disc
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Auflösungsgeschwindigkeit von natürlichem monoklinen Pyrrhotin, FeS1.14, wurde in sauerstofffreien LösungenS([H+]=0.1, [Na+]=0.9, [ClO 4 − ]=1.0 mol kg−1) mit Hilfe der Methode der rotierenden Scheibe bestimmt. Im Temperaturbereich von 40–90° erfolgt die Auflösungsreaktion kinetisch kontrolliert, wobei eine Aktivierungsenergie von 14±1 kcal mol−1 (59±5 kJ mol−1) gefunden wurde.
    Notes: Abstract Using the rotating disc method, the rates of dissolution of natural monoclinic pyrrhotite, FeS1.14, in oxygen-free aqueous solutionsS([H+]=0.1, [Na+]=0.9, [ClO 4 − ]=1.0 mol kg−1) were determined. In the temperature range 40–90 °C the dissolution reaction occurs under kinetic control; the activation energy being 14±1 kcal mol−1 (50±5 kJ mol−1).
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  • 8
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    Monatshefte für Chemie 113 (1982), S. 1239-1244 
    ISSN: 1434-4475
    Keywords: Allyl alcohol ; Kinetics ; Mechanism ; Oxidation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Kinetik der Oxidation von Allylalkohol mitN-Bromsuccinimid (NBS) wurde bei 35 °C in wäßrigem Medium untersucht. Die Reaktion zeigt erste Ordnung gegenüberNBS und Allylalkohol. Bei relativ hoher Säurekonzentration zeigt sich keine Änderung der Reaktionsgeschwindigkeit, bei niedriger Säurekonzentration wird die Reaktionsgeschwindigkeit beträchtlich erhöht. Es wurde kein primärer Salzeffekt festgestellt. Bei varriierender Quecksilberacetatkonzentration bleibt die Reaktionsgeschwindigkeit gleich, bei Abwesenheit von Quecksilberacetat wird jedoch die Geschwindigkeitskonstante erhöht. Die kinetischen Parameter,E a, derArrheniusfaktorA, ΔH ≠, ΔG ≠ und ΔS ≠ wurden bestimmt. Ein Geschwindigkeitsgesetz in Übereinstimmung mit den experimentellen Befunden wurde abgeleitet und ein Mechanismus vorgeschlagen.
    Notes: Abstract The kinetics of oxidation of allyl alcohol byN-bromosuccinimide (NBS) has been studied at 35 °C in aqueous medium. The reaction shows first order dependence on bothNBS and allyl alcohol. In fairly high acid concentration, there is no change in the rate of the reaction but at low acid concentration, the rate is considerably enhanced. There is no primary salt effect. At varying mercuric acetate concentrations, the rate constant remains the same. But in the absence of mercuric acetate, the rate is enhanced. The kinetic parameters,E a,Arrhenius factorA, ΔH≠, ΔG≠ and ΔS≠ have been calculated. A rate law in agreement with experimental results has been derived. A mechanism is proposed.
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  • 9
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    Monatshefte für Chemie 113 (1982), S. 887-893 
    ISSN: 1434-4475
    Keywords: Diazotation ; Kinetics ; α-Naphthylamine
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Optimal diazotation conditions were determined by means of extinction measurements at various experimental conditions. The optimal conditions found arep H=9,5, the amount of phenol is 1 250 times the amount of α-naphthylamine.
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  • 10
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    Monatshefte für Chemie 114 (1983), S. 773-781 
    ISSN: 1434-4475
    Keywords: Diastereomers ; 2,3-Dihydrobilatrienes-abc ; Kinetics ; Saturation-Transfer-Kinetics ; Phytochrome Models
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract From kinetic and equilibrium measurements the activation and thermodynamic parameters of diastereomeric 2,3-dihydrobilatrienes-abc in positions “4” and “15” are deduced. Compared to bilatrienes-abc a pronounced thermal lability of these diastereomers is observed—the exocyclic double bond of the saturated lactam ring being the more labile one. This feature may be of relevance to the thermal cascades and dark reactions observed for phytochrome.
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  • 11
    ISSN: 1434-4475
    Keywords: Iodine monochloride ; Kinetics ; Solvent effects
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Kinetik der Addition von ICl zu einigen Vinylverbindungen in Nitrobenzol als Lösungsmittel wurde untersucht. In allen Fällen ist die Reaktion von zweiter Ordnung hinsichtlich ICl und von erster Ordnung hinsichtlich des Substrats, d. h. mit einer Gesamtordnung von drei. Geschwindigkeitskonstanten wurden für jedes Substrat bei 20°, 30°, 40° und 50°C gemessen. AusArrhenius-Diagrammen wurden Aktivierungsenergien ermittelt und auch andere kinetische und thermodynamische Parameter wurden bestimmt. Ein Mechanismus wird vorgeschlagen, wobei die verschiedenen Parameter diskutiert werden. Lösungsmitteleffekte werden ebenfalls diskutiert und die Daten mit Nitrobenzol und Essigsäure als Lösungsmittel miteinander verglichen.
    Notes: Abstract The kinetics of the addition of iodine monochloride (ICl) to some vinyl compounds in nitrobenzene solvent was investigated. In all cases the reaction follows second order dependence on ICl and first order on the substrate, making the total order three. Rate constants were measured for each substrate at 20°, 30°, 40° and 50°C.Arrhenius plots were made from which activation energies were evaluated. Other kinetic and thermodynamic parameters are reported. A suitable mechanism is proposed for the reaction and based on this, the various parameters are discussed. Solvent effects are discussed and the data with nitrobenzene and acetic acid solvents are compared.
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  • 12
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    Monatshefte für Chemie 115 (1984), S. 1185-1197 
    ISSN: 1434-4475
    Keywords: Mono and polycarboxylic esters ; Metal salt catalysis ; Kinetics ; Chromatographic analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The alcoholysis of various esters of aromatic carboxylic esters with octadecanol in the presence of lead stearate was investigated by chromatographic analysis of the reaction mixtures. The reactivity of the esters was found to be strongly affected by the substitution pattern of the aromatic nucleus as well as by the structure of the alkoxy group. Electron donating substituents in a suitable position lead to a remarkable increase in reactivity compared to the unsubstituted alkyl esters.
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  • 13
    ISSN: 1434-4475
    Keywords: Kinetics ; Negative salt effect ; Oxidation ; Stopped-flow
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The influence of NaClO4, NaCl and Na2SO4 on the oxidation of Fe(phen) 3 2+ by Ce(IV) was investigated by means of the stopped-flow method. At the concentrations range of NaClO4 and NaCl 0.1–1.0M the rate constant values decrease from 1.03·105 to 0.56·105M−1s−1 and from 1.08·105 to 0.81·105M−1s−1 respectively. In varying concentrations of Na2SO4 solutions (0.05–0.35M) the rate constant values decrease from 1.05·105M−1s−1 to 0.45·105M−1s−1. Taking into account the negative salt effect the mechanism of the reaction progress is proposed.
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  • 14
    ISSN: 1434-4475
    Keywords: Arginine ; Catalysis ; Kinetics ; Mechanism ; Oxidation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Oxidation erfolgt sowohl mit als auch ohne Cu(II)-Katalysator in erster Ordnung bezüglich des Oxidationsmittels und des Substrats; inverse Ordnung wird bezüglich der Alkalikonzentration beobachtet. Bis zu einer Cu(II)-Konzentration von≤2×10−5 M ist die Geschwindigkeitskonstante der Katalysatorkonzentration proportional; darüber wird eine konstantbleibende Geschwindigkeit beobachtet, die nun von der Cu(II)-Konzentration unabhängig ist. Neutralsalze haben keinen Effekt auf die Geschwindigkeitskonstante. Es wird für den katalysierten und unkatalysierten Reaktionsablauf ein Mechanismus vorgeschlagen und ein mathematischer Ansatz präsentiert.
    Notes: Abstract The kinetics of uncatalysed and Cu(II) catalysed oxidation of arginine monohydrochloride was investigated. Both reactions follow a singular order dependence each in oxidant and substrate. An inverse order dependence is reported with the alkali concentration. A plot of observed rate constant versus Cu(II) concentrations Cu(II)≤2.0×10−5 M is linear; from the intercept the rate constant for the uncatalysed pathway was calculated. However, at high copper ion concentrations i.e. Cu(II)〉2.0×10−5 M a fixed value of rate constant was found for all catalyst concentrations. Added neutral salts show an insignificant effect on the reaction rate. Mechanisms were proposed for both cases and rate expressions were derived by applying steady state assumptions.
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  • 15
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    Calcified tissue international 33 (1981), S. 431-439 
    ISSN: 1432-0827
    Keywords: Apatite ; Fluorhydroxyapatite ; Crystal growth ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary The kinetics of seeded crystal growth of calcium apatites were studied in dilute supersaturated solutions at various levels of fluoride concentrations. Initial precipitation rates were enhanced by fluoride concentrations higher than 0.05 ppm. The analytical results are consistent with the precipitation of fluoridated hydroxyapatites, Ca5Fx-(OH)1−x(PO4)3, FHA. The degree of fluoridation, X, appears to be determined by the activity of HF in solution, which varies for the various initial fluoride levels but remains fairly constant during precipitation. Thus the composition of the precipitating phase was the same for a given solution whether 25 or 10 mg of hydroxyapatite was added as seeds. All the experimental results are consistent with the BCF theory, which relates the mean linear rate of growth, RL, to the supersaturation, DS, by the expression RL=C1T(DS-1)1n(DS)tanh(C2/T 1n DS), in which DS is the supersaturation defined by mean molar activities with respect to the precipitating FHA, T the absolute temperature, and C1 and C2 are constants calculated from the experimental results. Consequently, the crystal growth appears to take place in surface kinks and to be controlled by surface diffusion. Since crystal growth in most biological systems takes place at fluoride concentrations within the experimental range used, it seems probable that it occurs along the model advanced in the present investigation.
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  • 16
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    Monatshefte für Chemie 111 (1980), S. 1125-1133 
    ISSN: 1434-4475
    Keywords: Diazotization ; Kinetics ; α-Naphthylamine
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The kinetics of the diazotization of α-naphthylamine1 in water HCl solution from 0,2N to 2.0N at 0 °C were investigated. It was found that the nitrosation reaction $$\alpha --C_{10} H_7 NH_2 + NOCl\mathop \rightleftharpoons \limits^{k_v } \alpha --C_{10} H_7 NH_2 NO^ + + Cl^ - $$ is a preceeding advance-back-reaction (velocity coefficient of the nitrosation is 1.92·1010l mol−1 s−1). The decomposition of I by splitting off a proton is the rate determining reaction. The free enthalpy of activation for the nitrosation reaction equals 12.94 kJ/mol.
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  • 17
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    Monatshefte für Chemie 111 (1980), S. 1135-1142 
    ISSN: 1434-4475
    Keywords: Hammet parameter ; Kinetics ; Mechanism ; Thermodynamic parameters
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Kinetik der Reaktion von drei substituierten Acetophenonen mit Bromsuccinimid in Perchlorsäure in Gegenwart von Quecksilberacetat wurde untersucht. Die Reaktion war von nullter Ordnung gegenüberNBS, erster Ordnung gegenüber den Ketonen und [H+]. Mögliche Mechanismen der Reaktion werden diskutiert und auch eine Geschwindigkeitsgleichung wird abgeleitet. Es wurden die thermodynamischen Parameter der Reaktion bestimmt und auch einHammet'scher ϖ-Wert (+0,6) für die Oxidation der Methylarylketone ermittelt.
    Notes: Abstract The kinetics of the reaction of three substituted acetophenones withN-Bromosuccinimide was studied in perchloric acid media in presence of mercuric acetate. The reactions were found to be zero order with respect toNBS while the order with respect to ketones and [H+] was found to be unity. The addition of succinimide mercuric acetate and sodium perchlorate has no effect on the rate of oxidation and the rate increases with the decrease in dielectric constant of the medium. Kinetic investigations have revealed that the order of reactivity ism-nitroacetophenone 〉 p-chloroacetophenone 〉 p-methylacetophenone. TheArrhenius equation has been found to be valid in the temperature range 35–55°. Thermodynamic parameters have been calculated. Mechanistic pathways of the reactions are discussed and a rate equation is derived.Hammett's plot gives a ϖ value of +0.60 for methyl-aryl-ketones.
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  • 18
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    Monatshefte für Chemie 113 (1982), S. 3-14 
    ISSN: 1434-4475
    Keywords: Graphite ; Kinetics ; Reduction ; Thoria ; Thoriumcarbide
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Reduktion von Thoriumoxid mit Graphit im Überschuß wurde mittels einer Thermowaage zwischen 1620 und 1920 K im Vakuum untersucht. Ab ThO2:C=1:50 war die Reaktionsgeschwindigkeit vom Mischungsverhältnis unabhängig; das Endprodukt war immer ThC2. Der logarithmische Gewichtsverlust war direkt proportional der Zeit, und dieArrheniusgerade zeigte einen Knickpunkt bei 1710 K: unterhalb dieser Temperatur ergab sich eine Aktivierungsenergie von 440 kJ, oberhalb eine solche von 260 kJ. Die Temperatur des Knickpunkts entspricht der Umwandlungstemperatur von monoklinem in tetragonal raumzentriertes ThC2.
    Notes: Abstract The reduction of thoria with excess graphite was studied with a thermo-balance in vacuum between 1620 and 1920 K. From Th02:C=1:50 the rate of reaction was independent of the ratio of the reactants; the endproduct was always ThC2. The logarithmic weight loss was directly proportional to the time, and theArrhenius plot showed a break at 1710 K: below this temperature the activation energy was found to be 440 kJ, above 260 kJ. The temperature corresponding to the break coincides with the transition temperature of monoclinic to body-centered tetragonal ThC2.
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  • 19
    ISSN: 1434-4475
    Keywords: Kinetics ; Ligand-transfer ; Thallium (III)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The transfer of oxinate ions from thallium (III)oxinate to trivalent Fe(DMF) 6 3+ in propylenecarbonate takes place via rearrangements within a rapidly formed binuclear thallium(III)—iron(III) complex. In a last rapid step this rearranged complex reacts with excess reactants to the final products whose composition accordingly depends on the ratio of the reactant concentrations.
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  • 20
    ISSN: 1434-4475
    Keywords: Hydroperoxide ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Bei der Zersetzung von α,α-Dimethylbenzylhydroperoxid (1) unter Verwendung eines Kupfer(II)chlorkomplexes wurde die neue Feststellung gemacht, daß das Produktverhältnis Acetophenon (2): α,α-Dimethylbenzylalkohol (3) stets 2:1 ist. Die Kinetik der Reaktion wurde untersucht und ein Mechanismus vorgeschlagen, der mit dem experimentellen Resultat konsistent ist.
    Notes: Abstract In the decomposition of α,α-dimethylbenzyl hydroperoxide (1) by use of copper(II) chlorocomplexes, the novel fact was found that the product ratio of acetophenone (2) to α,α-dimethylbenzyl alcohol (3) is 2 to 1. The kinetics of this result was investigated and a mechanism consistent with the experimental result is proposed.
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  • 21
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    Monatshefte für Chemie 114 (1983), S. 411-423 
    ISSN: 1434-4475
    Keywords: Bromination ; Dihydroxydiphenylmethanes ; Intramolecular hydrogen bonding ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The bromination of 15 dinuclear phenolic compounds (dihydroxydiphenylmethanes, methylene bisphenols) by molecular bromine in acetic acid was studied kinetically at 22°C. In all compounds the electrophilic substitution occurred inortho-position to the phenolic hydroxy group of the methyl phenol unit while the non reacting neighboring unit was differently substituted by H, CH3,t-Bu and NO2. A decrease in the reaction rate was observed in 2,2′-dihydroxydiphenylmethanes, where the +M-effect of the hydroxy group is diminished by an intramolecular hydrogen bond. The strength of this hydrogen bond may be influenced mainly by steric factors. Strong electron withdrawing substituents like NO2 show a rate decreasing influence on the reactivity of the neighboring unit also in 2,4′- and 4,4′-dihydroxydiphenylmethanes.
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  • 22
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    Monatshefte für Chemie 115 (1984), S. 1385-1392 
    ISSN: 1434-4475
    Keywords: Periodate oxidation ; Solvent effect ; Reaction rate ; Kinetics ; Octacyanomolybdate (IV)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Kinetik der Oxidation von Mo(CN) 8 4− mit IO4/− wurde in Ethanol—Wasser über einen Temperaturbereich von 15–35 °C untersucht. Der Effekt der Lösungsmittelzusammensetzung auf die Reaktionsgeschwindigkeit und der Mechanismus der Reaktion werden diskutiert. Die Aktivierungsparameter sind angeführt. Es wird ein „Inner-Sphere“-Mechanismus vorgeschlagen, der mit den kinetischen Ergebnissen konsistent ist.
    Notes: Abstract The kinetics of the oxidation of Mo(CN) 8 4− by IO 4 − has been studied in ethanol—water solvent mixtures over a temperature range of 15–35 °C. The effect of solvent composition on the reaction rate and the mechanism has been investigated. Activation parameters are given. An inner-sphere mechanism, consistent with the kinetic results, is proposed.
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    Monatshefte für Chemie 115 (1984), S. 405-414 
    ISSN: 1434-4475
    Keywords: Kinetics ; Mechanism ; Oxidation
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    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Es wurde die Kinetik der Oxidation von Chinol mit Quecksilbernitrat in Gegenwart einer Mischung ausAcOH-H2O-HNO3 untersucht, um die aktive Species bei der Oxidation in diesem Medium aufzuklären. Die Reaktionsordnung ist sowohl bezüglich des Chinols als auch des Hg(II)-Ions erster Ordnung. Die Reaktionsgeschwindigkeit erhöht sich leicht mit der HNO3-Konzentration und auch mit abfallender Dielektrizitätskonstante des Mediums. Die Reaktionsgeschwindigkeit sinkt mit dem Zusatz von KNO3. Es ist keinerlei Hinweis auf eine Komplexbildung zwischen Chinol und Hg(II) festzustellen. Die Resultate der Untersuchungen legen HgNO + 3 als aktive Spezies nahe. Es wird ein möglicher Mechanismus mit einem Zweielektronen-Transfer im geschwindigkeitsbestimmenden Schritt vorgeschlagen. Das dabei produziertep-Benzochinon existiert nicht in freier Form, sondern es bildet einen stabilen 1 : 1-Komplex mit Quecksilbernitrat; dieser Komplex wurde mittels TLC und IR charakterisiert.
    Notes: Abstract The kinetics of oxidation of quinol by mercuric nitrate in presence ofAcOH-H2O-HNO3 mixture has been investigated in order to find the active species of mercuric nitrate involved in the oxidation in this medium. The order of reaction both with respect to quinol and Hg(II) is found to be one. The reaction rate slightly increases with the increase in [HNO3] and the decrease of the dielectric constant of the medium. The reaction rate retards on addition of KNO3. There is no evidence for complex formation between quinol and Hg(II). These results suggest that HgNO + 3 might be the active species in this medium. A probable mechanism involving a two electron transfer in the rate determining step has been suggested. The producedp-benzoquinone does not exist in free state but forms a stable (1 : 1) complex with mercuric nitrate which has been characterized by TLC and IR studies.
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    Monatshefte für Chemie 115 (1984), S. 697-704 
    ISSN: 1434-4475
    Keywords: Electrohydrodimerization ; Benzylidenemalononitriles ; Kinetics ; Electrohydrodimerization ; Benzylidenemalononitriles ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Mittels derivativer cyclischer Voltammetrie wurden für die Titelreaktion Geschwindigkeitskonstanten und Aktivierungsparameter erhalten (Dimethylformamid als Lösungsmittel). Benzyliden-,p-Methyl- undp-Methoxybenzylidenmalonnitril reagieren ausschließlich über die Dimerisierung ihrer Anionenradikale (Radikal-Radikal-Kopplung), währenddessen die Dimerisierung vonp-Fluorbenzylidenmalonnitril zu 25% über die Kopplung des Anionenradikals mit dem Substrat erfolgt.
    Notes: Abstract Rate constants and activation parameters for the reductive dimerization of substituted benzylidenemalononitriles were obtained from derivate cyclic voltammetry measurements in dimethylformamide as solvent. Benzylidene-,p-methyl-andp-methoxybenzylidenemalononitrile react exclusively via dimerization of their anion radicals (radical-radical coupling) while forp-fluorobenzylidenemalononitrile 25% of the dimerization proceeds by coupling of the anion radical with the substrate.
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    Calcified tissue international 36 (1984), S. 48-59 
    ISSN: 1432-0827
    Keywords: Salivary proteins ; Adsorption ; Thermodynamics ; Kinetics ; Hydroxyapatite
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary Equilibrium and kinetic experiments were conducted to investigate the factors determining the adsorption of salivary macromolecules onto hydroxyapatite. Using amino acids and other small adsorbates, it was determined that the carboxyl attached to the α carbon does not appear to adsorb onto HA and the affinities of side-chain carboxyls are much smaller than that of the phosphate group (phosphoserine). Hydroxyl (serine) displays an extremely high affinity, but its adsorption site on HA is different and the number of such sites is much smaller than found for the rest of the functional groups investigated. It is shown that the information obtained from small molecules cannot be readily applied to prediction of the adsorption behavior of salivary macromolecules and polypeptides. The kinetics of adsorption of the salivary phosphopeptide statherin, a polyaspartate, and the salivary prolinerich phosphoprotein PRP3 are consistent with the reversibility of the adsorption process; no conclusion was possible in the case of the protein PRP1. Apparent irreversibility cannot be explained on the basis of multipoint binding or the properties of the carboxyl versus phosphate group; it appears that secondary structure determines to a significant extent the adsorption properties of the macromolecules. Calculation of the thermodynamic molar quantities of adsorption of PRP1, PRP3, andl-ASP onto HA showed that the process is entropically driven. The functional relationship between partial molar entropy and adsorption coverage is similar for the two proteins, but quite different from that for aspartate. Explanations for these results are advanced on the bases of changes in structure configurations and displacement of water from the adsorbate and the adsorbent surface, the second factor being the dominant one in the adsorption of a small molecule such asl-ASP.
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    European biophysics journal 8 (1981), S. 23-34 
    ISSN: 1432-1017
    Keywords: Light-scattering ; Flash photometry ; Kinetics ; Visual transduction ; Biomembranes
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    Topics: Biology , Physics
    Notes: Abstract A recent development of kinetic light-scattering and -absorption photometry is described. Essential points are: 1) In the scattering experiment, amplitude resolution of 2 · 10−5 (single flash) by application of a differential detector, stability of the same magnitude due to optical compensation, high intensity at the detector due to special optics for the scattered light and semiconductor sources. 2) In the absorption measurement, elimination of scattering contributions by the dual wavelength-method and by high aperture optics. 3) Simultaneous measurement of absorption and scattering. The application of the method is described in using signals from isolated bovine rod outer segments. A reliable procedure is described by the use of which the originally measured light-scattering effects can be split up into single signals. The method allows comparative kinetic analysis of absorption and scattering signals. The possible causal connections between pigment and membrane structure processes can be selected.
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    European biophysics journal 9 (1983), S. 145-170 
    ISSN: 1432-1017
    Keywords: Viroids ; Thermodynamics ; Kinetics ; Hydrodynamics ; Function
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    Topics: Biology , Physics
    Notes: Abstract Viroids are an independent class of plant pathogens which are distinguished from viruses by the absence of a protein coat and by their unusually small size. They are single-stranded circular RNAs composed of about 360 nucleotide residues. Sequence analysis and physicochemical studies of the potato spindle tuber viroid (PSTV) have shown that, as a result of intra-molecular base pairing, viroids form a unique rod-like secondary structure which is characterized by a serial arrangement of double-helical sections and internal loops. There is no indication for an additional tertiary structure because all parts of the molecule are freely accessible to ligand interaction. During the denaturation all of the native base pairs of viroids are dissociated in one highly cooperative transition, and in the same process very stable hairpins which are not present in the native structure are newly formed. Most of the properties of the structure and structural transitions of PSTV have been found also in citrus exocortis viroid, chrysanthemum stunt viroid and four different viroid-like RNAs associated with the cadang-cadang disease. The close similarity between these viroids is more expressed in the overall structure and in thermodynamic and functional domains than in the primary sequence. The stiffness of all viroids can be described by an unique persistence length of 300 å. Characteristically, regions of premelting, regions of stable hairpins, and the sequence UACUACCCGGUGG which is opposite to one of the stable hairpins, are the most conservative sequences in the molecules. Current hypotheses about the function of viroids are discussed on the basis of their structural and thermodynamic features. The suggestion that viroid RNA has features similar to DNA has been supported by the finding that they are replicated in vitro by the DNA-dependent RNA polymerase II of the host plant. The highly conserved sequence in viroids mentioned above corresponds very closely to a segment at the 5′-end of the small nuclear RNA U1 of eukaryotes. Because this segment is discussed in recent models, to be involved in the splicing process, a hypothesis is proposed in which viroids interfere with the splicing process leading to a pathogenic misregulation of mRNA processing.
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    Archives of microbiology 139 (1984), S. 28-32 
    ISSN: 1432-072X
    Keywords: Cyanobacterium ; Phosphate ; Uptake ; Kinetics ; Regulation ; Pulse ; Steady state
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In order to study phosphate uptake kinetics the cyanobacteriumOscillatoria agardhii was grown in continuous culture under a phosphorus limitation. The affinity of the uptake system reflected in the initial slope of the uptake rate versus external substrate concentration curve (dV/ds) was found to be unaffected by the growth wate. The maximum phosphate uptake rate (V m ) decreased as the growth rate was increased. Attempts were made to relate the decrease ofV m to the increase in phosphorus content of the cells that occurred a higher growth rates. Accumulation of phosphate during pulse experiments indeed resulted in a decrease ofV m . However feedback regulation ofV m by accumulated phosphorus was found to occur only to a small extent in steady state growing cells. The main part of the regulation of the activity of the phosphate uptake system seemingly is determined by a long term process that is, at least longer than 2 h. The presence of short term feedback inhibition by accumulated phosphorus on the activity of the uptake system provides an explanation of the phenomenon thatOscillatoria agardhii is not able to grow at nearμ max growth rates under a phosphorus limitation.
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    Physics and chemistry of minerals 27 (2000), S. 495-503 
    ISSN: 1432-2021
    Keywords: Key words Thermal decomposition ; Kinetics ; Siderite ; CRTA
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    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Abstract The mechanism of the thermal decomposition of two siderites (a pure synthetic and a natural Mg-containing sample) has been determined from comparison of the results obtained from linear heating rate (TG) and constant rate thermal analysis (CRTA) experiments in high vacuum. The thermal decomposition of the synthetic siderite takes place approximately 200 K below the decomposition temperature of the natural sample. The mechanism and the product of the thermal decomposition are different for the siderite samples. In fact, an A2 kinetic model describes the thermal decomposition of the synthetic siderite, whereas the thermal decomposition of the natural sample obeys an F1 kinetic law. Decomposition products of the synthetic siderite are iron and magnetite, those of the natural siderite are wüstite and minor magnetite.
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    Plant and soil 54 (1980), S. 359-381 
    ISSN: 1573-5036
    Keywords: Alaska ; Ammonium ; Birch ; Forest-floor ; Isotopedilution ; Kinetics ; Nitrate ; Nitrogen pool
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary An analysis was conducted of nitrogen dynamics in the forest floor of a paper birch forest in subarctic Alaska. Low addition levels of high enrichment isotope (〈1% of the total nitrogen pool with 95 to 99 atom percent excess15N) and isotope dilution analysis, were used to establish the kinetics of nitrogen flow. The pools examined were NH4, NO3+NO2, soluble organic-N and forest floor organic matter. This approach allows a more realistic assessment of rates of N movement at the levels of nitrogen concentration encountered in natural systems.
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    Plant and soil 54 (1980), S. 399-417 
    ISSN: 1573-5036
    Keywords: Adsorption ; Anodic stripping voltammetry (ASV) ; Kinetics ; Lead ; River-mud
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The effects of several factors on the rate and the capacity of lead adsorption by river-mud were studies. These factors included the concentration of mud, the concentration of lead, the organic matter content of mud, pH, time of adsorption, temperature and agitation. The reaction order of the adsorption process with respect to lead and the type of adsorption were determined. Also, indications of the rate-limiting step were discussed and an empirical equation describing the adsorption of lead on river-mud was developed.
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  • 32
    ISSN: 1573-5036
    Keywords: Ammonification ; Cadmium ; Heavy metals ; Kinetics ; Lead ; Nitrification ; Perfusion incubations ; Polluted soils ; Selection ; Toxicity ; Zinc
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The sensitivity of the mineralization of nitrogen by a range of soils contaminated with heavy metals (up to 340 μg Cd g−1, 7500 μg Pb g−1 and 34000 μg Zn g−1) to the addition of heavy metals in solution were studied using pot incubations (ammonification) and a soil perfusion technique (nitrification). The ammonification of peptone showed little correlation between treatments with Cd, Zn (1000 and 5000 μg g−1) and Pb (10000 and 20000 μg g−1) and origin of the soil. Nitrification was considerably more sensitive to heavy metals than ammonification. All the soils had active, often large, populations of ammonifying and nitrifying organisms which showed substantial similarities between the soils. The rate of nitrifying activity (NO3−N production) was logrithmic in most cases. The presence of tolerant populations of nitrifying organisms in the contaminated soils was demonstrated. Tolerance was also eventually acquired after a longer lag phase, by the non-contaminated soil populations although the rate of activity was often reduced. Metals added in solution were adsorbed by the soil within 4 hours. Differences in toxicity between metal salts (chlorides, sulphates and acetate) were attributed to the amount left in solution. However, in many instances, acetate was found to stimulate all the stages in the mineralisation of nitrogen.
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  • 33
    ISSN: 1435-1536
    Keywords: Key words Polyacryloylacetone ; Polyethylacrylacetate ; Spread monolayer ; Photochemical tautomerization ; Kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract The surface organization of enol units of polyacryloylacetone (PAA) and polyethylacrylacetate (PEAA) monolayers at the air–water interface is examined using surface pressure, surface potential and rheological measurements and theoretical calculations based on molecular models. The mechanism and kinetics of the photochemical enol–keto tautomerization of PAA and PEAA polymers organized in a monolayer of closely packed monomer units are studied by measuring the surface area increase at constant surface pressure. The results indicate an increase in the area per unit during the consecutive enol-to-keto photoconversion and the slow interfacial reorganization of these ¶forms to a more favourable state.
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    Space science reviews 92 (2000), S. 177-200 
    ISSN: 1572-9672
    Keywords: Solar Nebula ; Kinetics ; Thermochemistry ; Magnetite ; Troilite ; Water ; Hydrous Minerals ; Hydration ; Oxidation ; Volatiles ; Serpentine ; Talc ; Brucite
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract Thermochemical equilibrium calculations predict gas phase, gas-grain, and solid phase reactions as a function of pressure and temperature in the solar nebula. However, chemical reactions proceed at different rates, which generally decrease exponentially with decreasing temperature. At sufficiently low temperatures (which vary depending on the specific reaction) there may not have been enough time for the predicted equilibrium chemistry to have taken place before the local environment cooled significantly or before the gaseous solar nebula was dispersed. As a consequence, some of the high temperature chemistry established in sufficiently hot regions of the solar nebula may be quenched or frozen in without the production of predicted low temperature phases. Experimental studies and theoretical models of three exemplary low temperature reactions, the formation of troilite (FeS), magnetite (Fe3O4), and hydrous silicates, have been done to quantify these ideas. A comparison of the chemical reaction rates with the estimated nebular lifetime of 0.1-10 million years indicates that troilite formation proceeded to completion in the solar nebula. Magnetite formation was much slower and only thin magnetite rims could have formed on metal grains. Hydrous silicate formation is predicted to be even slower, and hydrous silicates in meteorites and interplanetary dust particles probably formed later on the parent bodies of these objects, instead of in the solar nebula.
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    Journal of statistical physics 30 (1983), S. 219-241 
    ISSN: 1572-9613
    Keywords: Kinetics ; phase transitions ; nucleation ; lattice gas ; Becker-Doring equations ; clusters
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    Topics: Physics
    Notes: Abstract A method is described for calculating from first principles the coefficients in the Becker-Döring equations for the rate of change of the distribution of cluster sizes in a low-density lattice gas with Kawasaki dynamics. The method depends on solving a diffusion problem for the concentration of particles near a given cluster. The coefficients are calculated for cluster sizes up to 6, on a simple cubic lattice at a temperature 0.59 times the critical temperatures, and extrapolated to larger sizes. The resulting version of the Becker-Doring equations is then solved numerically. Comparison with the results of a computer simulation (at overall concentration 0.075) carried out by Kalos and others indicates that the method gives quite good predictions of the dependence of the cluster distribution on the critical cluster size (usually denoted by l*) but that the predicted rate of change of critical cluster size with time is too small, at this overall concentration, by a factor of about 0.3.
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    Journal of statistical physics 34 (1984), S. 399-426 
    ISSN: 1572-9613
    Keywords: Kinetics ; Becker-Doring equations ; clusters ; computer simulation
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    Topics: Physics
    Notes: Abstract We make a quantitative comparison between the predictions of the Becker-Döring equations and computer simulations on a model of a quenched binary A-B alloy. The atoms are confined to the vertices of a simple cubic lattice, interact through attractive nearest neighbor interactions, and move by interchanges of nearest neighbor pairs (Kawasaki dynamics). We study in particular the time evolution of the number of clusters of A atoms of each size, at four different concentrations: ρA=0.035, 0.05, 0.075, and 0.1 atoms per lattice site. The temperature is 0.59 times the critical temperature. At this temperature the equilibrium concentration of A atoms in the B-rich phase is ρ A eq =0.0145 atoms/lattice site. The coefficients entering the Becker-Döring equations are obtained by extrapolation from previously published low-density calculations, leaving the time scale as the only adjustable parameter. We find good agreement at the three lower densities. At 10% density the agreement is, as might be expected, less satisfactory but still fairly good-indicating a quite wide range of utility for the Becker-Döring equations.
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    Reaction kinetics and catalysis letters 70 (2000), S. 251-257 
    ISSN: 1588-2837
    Keywords: Kinetics ; addition reaction ; diethylamine
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The kinetics of addition reaction of diethylamine to vinyl groups of oligo[(2-acryloyloxy-5-methyl-1,3-phenylene)methylene] in benzene with excess amine in the presence of lithium diethylamide as catalyst has been investigated. The reaction rate, was found to be expressed as: V = k [CH2=CH-][Et2NLi] with the ratio of [Et2NH]o to [Et2NLi]o being 5. Second-order rate constants for addition and the activation energy have been determined.
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    Reaction kinetics and catalysis letters 71 (2000), S. 13-18 
    ISSN: 1588-2837
    Keywords: Kinetics ; esterification ; maleic anhydride ; tetrabutyl titanate
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Kinetics of the esterification of maleic anhydride with 2-ethylhexanol in the presence of sulfuric acid, amphoteric tetrabutyl titanate or in the absence of external catalyst has been studied. The kinetic equations and kinetic parameters have been determined.
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    Reaction kinetics and catalysis letters 70 (2000), S. 227-234 
    ISSN: 1588-2837
    Keywords: Kinetics ; non-uniform surfaces ; Eley mechanism
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Multi-centered nature of adsorption as well as adsorbate-adsorbate interactions is addressed. A discussed reaction mechanism includes adsorption of a bulky molecule A, which requires several sites for adsorption, and two successive reaction steps of Eley type. Numerical treatment is performed for a special case of this mechanism.
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    Reaction kinetics and catalysis letters 70 (2000), S. 219-226 
    ISSN: 1588-2837
    Keywords: Kinetics ; adsorption ; non-uniform surfaces
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The multi-centered nature of adsorption as well as adsorbate-adsorbate interactions is discussed. The Bragg-Williams approximation of the lattice gas model was chosen for the description of these interactions. A derivation of adsorption isotherm based on statistical mechanics is presented.
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    Reaction kinetics and catalysis letters 69 (2000), S. 299-303 
    ISSN: 1588-2837
    Keywords: Kinetics ; In-Fe2O3/HZSM-5 ; nitrogen oxide ; selective reduction ; methane
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    Topics: Chemistry and Pharmacology
    Notes: Abstract A kinetic model presented for the selective reduction of NO with CH4 over an In-Fe2O3/HZSM-5 catalyst by considering the process as a combination of two simultaneous reactions: NO+O2+CH4 (reaction 1) and O2+CH4 (reaction 2). Linear regression calculation was employed to find the kinetic parameters. It was found that although the activation energies of the two reactions were almost identical, the reaction rate constants were dramatically different, namely, k1≫k2, indicating that the NO+O2+CH4 reaction was more preferable to take place on the In-Fe2O3/HZSM-5 catalyst as compared with the O2+CH4 reaction.
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    Publication Date: 2003-04-05
    Description: The ability to visualize, track, and quantify molecules and events in living cells with high spatial and temporal resolution is essential for understanding biological systems. Only recently has it become feasible to carry out these tasks due to the advent of fluorescent protein technology. Here, we trace the development of highly visible and minimally perturbing fluorescent proteins that, together with updated fluorescent imaging techniques, are providing unprecedented insights into the movement of proteins and their interactions with cellular components in living cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lippincott-Schwartz, Jennifer -- Patterson, George H -- New York, N.Y. -- Science. 2003 Apr 4;300(5616):87-91.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA. jlippin@helix.nih.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12677058" target="_blank"〉PubMed〈/a〉
    Keywords: *Cell Physiological Phenomena ; Diagnostic Imaging/*methods ; Fluorescence ; Fluorescence Recovery After Photobleaching/methods ; Fluorometry/methods ; Green Fluorescent Proteins ; Kinetics ; Light ; *Luminescent Proteins/chemistry/genetics/metabolism ; Microscopy/*methods ; Microscopy, Fluorescence/*methods ; Mutagenesis ; Protein Engineering ; Proteins/*metabolism ; Recombinant Fusion Proteins ; Spectrometry, Fluorescence
    Print ISSN: 0036-8075
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    Publication Date: 2000-01-05
    Description: The nematode pharynx has a potassium channel with unusual properties, which allows the muscles to repolarize quickly and with the proper delay. Here, the Caenorhabditis elegans exp-2 gene is shown to encode this channel. EXP-2 is a Kv-type (voltage-activated) potassium channel that has inward-rectifying properties resembling those of the structurally dissimilar human ether-a-go-go-related gene (HERG) channel. Null and gain-of-function mutations affect pharyngeal muscle excitability in ways that are consistent with the electrophysiological behavior of the channel, and thereby demonstrate a direct link between the kinetics of this unusual channel and behavior.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791429/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791429/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Davis, M W -- Fleischhauer, R -- Dent, J A -- Joho, R H -- Avery, L -- HL46154/HL/NHLBI NIH HHS/ -- NS28407/NS/NINDS NIH HHS/ -- R01 HL046154/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1999 Dec 24;286(5449):2501-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390-9148, USA. wdavis@biology.utah.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10617464" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Caenorhabditis elegans/genetics/*physiology ; Feeding Behavior ; Genes, Helminth ; Genes, Reporter ; Ion Channel Gating ; Kinetics ; Membrane Potentials ; Models, Molecular ; Muscles/metabolism ; Mutation ; Neurons/metabolism ; Oocytes/metabolism ; Pharyngeal Muscles/physiology ; Potassium Channels/chemistry/genetics/*physiology ; Protein Conformation ; RNA, Complementary/genetics ; Recombinant Fusion Proteins/biosynthesis ; Xenopus laevis
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  • 44
    Publication Date: 2000-04-25
    Description: Major histocompatibility complex class II (MHC II) molecules capture peptides within the endocytic pathway to generate T cell receptor (TCR) ligands. Immature dendritic cells (DCs) sequester intact antigens in lysosomes, processing and converting antigens into peptide-MHC II complexes upon induction of DC maturation. The complexes then accumulate in distinctive, nonlysosomal MHC II+ vesicles that appear to migrate to the cell surface. Although the vesicles exclude soluble lysosomal contents and antigen-processing machinery, many contain MHC I and B7 costimulatory molecules. After arrival at the cell surface, the MHC and costimulatory molecules remain clustered. Thus, transport of peptide-MHC II complexes by DCs not only accomplishes transfer from late endocytic compartments to the plasma membrane, but does so in a manner that selectively concentrates TCR ligands and costimulatory molecules for T cell contact.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Turley, S J -- Inaba, K -- Garrett, W S -- Ebersold, M -- Unternaehrer, J -- Steinman, R M -- Mellman, I -- AI-13013/AI/NIAID NIH HHS/ -- AI-34098/AI/NIAID NIH HHS/ -- AI-39672/AI/NIAID NIH HHS/ -- New York, N.Y. -- Science. 2000 Apr 21;288(5465):522-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell Biology and Section of Immunobiology, Ludwig Institute for Cancer Research, Yale University School of Medicine, 333 Cedar Street, Post Office Box 208002, New Haven, CT 06520-8002, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10775112" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Monoclonal ; *Antigen Presentation ; Antigens, CD/immunology/metabolism ; Antigens, CD86 ; B-Lymphocytes/immunology/metabolism ; Bicyclo Compounds, Heterocyclic/pharmacology ; Biological Transport ; Cell Membrane/immunology/metabolism ; Cells, Cultured ; Dendritic Cells/*immunology/*metabolism ; Endocytosis ; Endosomes/immunology/metabolism ; Histocompatibility Antigens Class I/immunology/metabolism ; Histocompatibility Antigens Class II/immunology/*metabolism ; Kinetics ; Ligands ; Lipopolysaccharides/immunology ; Lysosomes/immunology/metabolism ; Membrane Glycoproteins/immunology/metabolism ; Mice ; Mice, Inbred C3H ; Muramidase/immunology/*metabolism ; Peptide Fragments/immunology/*metabolism ; Receptors, Antigen, T-Cell/metabolism ; Thiazoles/pharmacology ; Thiazolidines
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  • 45
    Publication Date: 2001-03-27
    Description: Receptor-mediated activation of heterotrimeric GTP-binding proteins (G-proteins) was visualized in living Dictyostelium discoideum cells by monitoring fluorescence resonance energy transfer (FRET) between alpha- and beta- subunits fused to cyan and yellow fluorescent proteins. The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant. During continuous stimulation, G-protein activation reached a dose-dependent steady-state level. Even though physiological responses subsided, the activation did not decline. Thus, adaptation occurs at another point in the signaling pathway, and occupied receptors, whether or not they are phosphorylated, catalyze the G-protein cycle. Construction of similar energy-transfer pairs of mammalian G-proteins should enable direct in situ mechanistic studies and applications such as drug screening and identifying ligands of newly found G-protein-coupled receptors.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Janetopoulos, C -- Jin, T -- Devreotes, P -- GM28007/GM/NIGMS NIH HHS/ -- GM34933/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2001 Mar 23;291(5512):2408-11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Chemistry, Johns Hopkins Medical Institutions, Baltimore, MD 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11264536" target="_blank"〉PubMed〈/a〉
    Keywords: 8-Bromo Cyclic Adenosine Monophosphate/pharmacology ; Animals ; Bacterial Proteins ; Cyclic AMP/metabolism/*pharmacology ; Deoxyadenine Nucleotides/pharmacology ; Dictyostelium/*metabolism ; Energy Transfer ; Fluorescence ; Guanosine 5'-O-(3-Thiotriphosphate)/pharmacology ; Heterotrimeric GTP-Binding Proteins/*metabolism ; Kinetics ; Ligands ; Luminescent Proteins ; Microscopy, Fluorescence ; Phosphorylation ; Receptors, Cyclic AMP/*metabolism ; Recombinant Fusion Proteins/metabolism ; *Signal Transduction ; Spectrometry, Fluorescence ; Transformation, Genetic
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  • 46
    Publication Date: 2001-01-06
    Description: All aspects of cellular RNA metabolism and the replication of many viruses require DExH/D proteins that manipulate RNA in a manner that requires nucleoside triphosphates. Although DExH/D proteins have been shown to unwind purified RNA duplexes, most RNA molecules in the cellular environment are complexed with proteins. It has therefore been speculated that DExH/D proteins may also affect RNA-protein interactions. We demonstrate that the DExH protein NPH-II from vaccinia virus can displace the protein U1A from RNA in an active adenosine triphosphate-dependent fashion. NPH-II increases the rate of U1A dissociation by more than three orders of magnitude while retaining helicase processivity. This indicates that DExH/D proteins can effectively catalyze protein displacement from RNA and thereby participate in the structural reorganization of ribonucleoprotein assemblies.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jankowsky, E -- Gross, C H -- Shuman, S -- Pyle, A M -- New York, N.Y. -- Science. 2001 Jan 5;291(5501):121-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA. 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11141562" target="_blank"〉PubMed〈/a〉
    Keywords: 3' Untranslated Regions/metabolism ; Acid Anhydride Hydrolases/chemistry/*metabolism ; Adenosine Triphosphate/metabolism ; Base Sequence ; Binding Sites ; Kinetics ; Models, Molecular ; Molecular Sequence Data ; Nucleic Acid Conformation ; Nucleoside-Triphosphatase ; Protein Binding ; Protein Conformation ; RNA/chemistry/*metabolism ; RNA Helicases/chemistry/*metabolism ; *RNA-Binding Proteins ; Ribonucleoprotein, U1 Small Nuclear/*metabolism
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  • 47
    Publication Date: 2001-07-21
    Description: The promoters of cell adhesion are ligands, which are often attached to flexible tethers that bind to surface receptors on adjacent cells. Using a combination of Monte Carlo simulations, diffusion reaction theory, and direct experiments (surface force measurements) of the biotin-streptavidin system, we have quantified polymer chain dynamics and the kinetics and spatial range of tethered ligand-receptor binding. The results show that the efficiency of strong binding does not depend solely on the molecular architecture or binding energy of the receptor-ligand pair, nor on the equilibrium configuration of the polymer tether, but rather on its "rare" extended conformations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jeppesen, C -- Wong, J Y -- Kuhl, T L -- Israelachvili, J N -- Mullah, N -- Zalipsky, S -- Marques, C M -- GM-17876/GM/NIGMS NIH HHS/ -- GM-47334/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2001 Jul 20;293(5529):465-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Materials Research Laboratory, Department of Chemical Engineering, University of California, Santa Barbara, CA 93106, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11463908" target="_blank"〉PubMed〈/a〉
    Keywords: Biotin/*chemistry/metabolism ; Chemistry, Physical ; Diffusion ; Kinetics ; Ligands ; Mathematics ; Monte Carlo Method ; Physicochemical Phenomena ; Polyethylene Glycols ; Polymers/*chemistry ; Protein Conformation ; Streptavidin/*chemistry/metabolism ; Surface Properties ; Thermodynamics
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  • 48
    Publication Date: 2001-11-17
    Description: Proteins are transported from the endoplasmic reticulum (ER) in vesicles formed by coat protein complex II (COPII). Soluble secretory proteins are thought to leave the ER in these vesicles by "bulk flow" or through recognition by hypothetical shuttling receptors. We found that Erv29p, a conserved transmembrane protein, was directly required for packaging glycosylated pro-alpha-factor (gpalphaf) into COPII vesicles in Saccharomyces cerevisiae. Further, an Erv29p-gpalphaf complex was isolated from ER-derived transport vesicles. In vivo, export of gpalphaf from the ER was saturable and depended on the expression level of Erv29p. These results indicate that membrane receptors can link soluble cargo proteins to the COPII coat.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Belden, W J -- Barlowe, C -- New York, N.Y. -- Science. 2001 Nov 16;294(5546):1528-31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11711675" target="_blank"〉PubMed〈/a〉
    Keywords: COP-Coated Vesicles/*metabolism ; Carboxypeptidases/metabolism ; Cathepsin A ; Cross-Linking Reagents ; Dimerization ; Endoplasmic Reticulum/*metabolism ; Glycosylation ; Golgi Apparatus/metabolism ; Kinetics ; Membrane Proteins/chemistry/genetics/isolation & purification/*metabolism ; Membrane Transport Proteins ; Peptides/chemistry/genetics/isolation & purification/*metabolism ; Precipitin Tests ; Protein Folding ; Protein Precursors/chemistry/isolation & purification/*metabolism ; Protein Transport ; Qb-SNARE Proteins ; Saccharomyces cerevisiae/genetics/*metabolism/ultrastructure ; *Saccharomyces cerevisiae Proteins ; Solubility ; Succinimides/pharmacology ; *Vesicular Transport Proteins
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  • 49
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Berendsen, H J -- New York, N.Y. -- Science. 2001 Dec 14;294(5550):2304-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands. berendsen@chem.rug.nl〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11743188" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Aquaporin 1 ; Aquaporins/chemistry/*metabolism ; Bacterial Outer Membrane Proteins/chemistry/*metabolism ; Cell Membrane Permeability ; *Computational Biology ; *Computer Simulation ; *Escherichia coli Proteins ; Hydrogen Bonding ; Kinetics ; Lipid Bilayers ; *Models, Biological ; Permeability ; Static Electricity ; Time Factors ; Water/*metabolism
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  • 50
    Publication Date: 2001-02-07
    Description: The disulfide reducing enzymes glutathione reductase and thioredoxin reductase are highly conserved among bacteria, fungi, worms, and mammals. These proteins maintain intracellular redox homeostasis to protect the organism from oxidative damage. Here we demonstrate the absence of glutathione reductase in Drosophila melanogaster, identify a new type of thioredoxin reductase, and provide evidence that a thioredoxin system supports GSSG reduction. Our data suggest that antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kanzok, S M -- Fechner, A -- Bauer, H -- Ulschmid, J K -- Muller, H M -- Botella-Munoz, J -- Schneuwly, S -- Schirmer, R -- Becker, K -- New York, N.Y. -- Science. 2001 Jan 26;291(5504):643-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center of Biochemistry, Im Neuenheimer Feld 328, Heidelberg University, D-69120 Heidelberg, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11158675" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Amino Acid Sequence ; Animals ; Binding Sites ; Drosophila melanogaster/*enzymology/genetics/metabolism ; Genes, Insect ; Glutathione/*metabolism ; Glutathione Disulfide/metabolism ; Glutathione Reductase/*metabolism ; Humans ; Kinetics ; Molecular Sequence Data ; Mutation ; NADP/metabolism ; Oxidation-Reduction ; Sequence Alignment ; Species Specificity ; Substrate Specificity ; Thioredoxin-Disulfide Reductase/antagonists & ; inhibitors/chemistry/*genetics/*metabolism
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  • 51
    Publication Date: 2001-11-03
    Description: The bacterial macrolide rapamycin is an efficacious anticancer agent against solid tumors. In a hypoxic environment, the increase in mass of solid tumors is dependent on the recruitment of mitogens and nutrients. When nutrient concentrations change, particularly those of essential amino acids, the mammalian Target of Rapamycin (mTOR) functions in regulatory pathways that control ribosome biogenesis and cell growth. In bacteria, ribosome biogenesis is independently regulated by amino acids and adenosine triphosphate (ATP). Here we demonstrate that the mTOR pathway is influenced by the intracellular concentration of ATP, independent of the abundance of amino acids, and that mTOR itself is an ATP sensor.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dennis, P B -- Jaeschke, A -- Saitoh, M -- Fowler, B -- Kozma, S C -- Thomas, G -- New York, N.Y. -- Science. 2001 Nov 2;294(5544):1102-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058, Basel, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11691993" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptor Proteins, Signal Transducing ; Adenosine Triphosphate/*metabolism ; Amino Acids/metabolism ; Androstadienes/pharmacology ; Carrier Proteins/metabolism ; Cell Line ; Deoxyglucose/pharmacology ; Enzyme Activation ; Homeostasis ; Humans ; Insulin/pharmacology ; Kinetics ; Phosphoproteins/metabolism ; Phosphorylation ; Protein Kinases/*metabolism ; RNA, Transfer, Amino Acyl/metabolism ; Recombinant Fusion Proteins/metabolism ; Ribosomal Protein S6 Kinases/antagonists & inhibitors/metabolism ; Ribosomes/metabolism ; Rotenone/pharmacology ; Signal Transduction ; Sirolimus/pharmacology ; TOR Serine-Threonine Kinases
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  • 52
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-05-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fernandez, J M -- Chu, S -- Oberhauser, A F -- New York, N.Y. -- Science. 2001 Apr 27;292(5517):653-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology and Biophysics, Mayo Foundation, Rochester, MN 55905, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11330326" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry, Physical ; Elasticity ; Ion Channels/chemistry ; Kinetics ; *Nucleic Acid Conformation ; Physicochemical Phenomena ; RNA/*chemistry ; RNA Stability ; RNA, Catalytic/*chemistry ; Stress, Mechanical ; Thermodynamics
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  • 53
    Publication Date: 2001-12-01
    Description: The first step in processing olfactory information, before neural filtering, is the physical capture of odor molecules from the surrounding fluid. Many animals capture odors from turbulent water currents or wind using antennae that bear chemosensory hairs. We used planar laser-induced fluorescence to reveal how lobster olfactory antennules hydrodynamically alter the spatiotemporal patterns of concentration in turbulent odor plumes. As antennules flick, water penetrates their chemosensory hair array during the fast downstroke, carrying fine-scale patterns of concentration into the receptor area. This spatial pattern, blurred by flow along the antennule during the downstroke, is retained during the slower return stroke and is not shed until the next flick.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koehl, M A -- Koseff, J R -- Crimaldi, J P -- McCay, M G -- Cooper, T -- Wiley, M B -- Moore, P A -- New York, N.Y. -- Science. 2001 Nov 30;294(5548):1948-51.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology, University of California, Berkeley, CA 94720-3140, USA. cnidaria@socrates.berkeley.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11729325" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Chemoreceptor Cells/physiology ; Fluorescence ; Kinetics ; Lasers ; Nephropidae/*physiology ; *Odors ; Smell/physiology ; *Water Movements
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  • 54
    Publication Date: 2001-11-03
    Description: In the exocytosis of neurotransmitter, fusion pore opening represents the first instant of fluid contact between the vesicle lumen and extracellular space. The existence of the fusion pore has been established by electrical measurements, but its molecular composition is unknown. The possibility that synaptotagmin regulates fusion pores was investigated with amperometry to monitor exocytosis of single dense-core vesicles. Overexpression of synaptotagmin I prolonged the time from fusion pore opening to dilation, whereas synaptotagmin IV shortened this time. Both synaptotagmin isoforms reduced norepinephrine flux through open fusion pores. Thus, synaptotagmin interacts with fusion pores, possibly by associating with a core complex of membrane proteins and/or lipid.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, C T -- Grishanin, R -- Earles, C A -- Chang, P Y -- Martin, T F -- Chapman, E R -- Jackson, M B -- New York, N.Y. -- Science. 2001 Nov 2;294(5544):1111-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology, University of Wisconsin Medical School, University of Wisconsin, Madison, WI 53706, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11691996" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Calcium/metabolism ; Calcium Channels, P-Type/metabolism ; Calcium Channels, Q-Type/metabolism ; *Calcium-Binding Proteins ; Cell Membrane Structures/*metabolism ; Chromogranins/metabolism ; Electrophysiology ; *Exocytosis ; Kinetics ; *Membrane Fusion ; Membrane Glycoproteins/*metabolism ; Membrane Potentials ; Nerve Tissue Proteins/*metabolism ; Neurotransmitter Agents/*metabolism ; Norepinephrine/metabolism ; PC12 Cells ; Protein Isoforms ; Rats ; Recombinant Fusion Proteins/metabolism ; Secretory Vesicles/*metabolism ; Synaptic Transmission ; Synaptic Vesicles/metabolism ; Synaptotagmin I ; Synaptotagmins
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  • 55
    Publication Date: 2001-09-08
    Description: Recently we reported that antibodies can generate hydrogen peroxide (H2O2) from singlet molecular oxygen (1O2*). We now show that this process is catalytic, and we identify the electron source for a quasi-unlimited generation of H2O2. Antibodies produce up to 500 mole equivalents of H2O2 from 1O2*, without a reduction in rate, and we have excluded metals or Cl- as the electron source. On the basis of isotope incorporation experiments and kinetic data, we propose that antibodies use H2O as an electron source, facilitating its addition to 1O2* to form H2O3 as the first intermediate in a reaction cascade that eventually leads to H2O2. X-ray crystallographic studies with xenon point to putative conserved oxygen binding sites within the antibody fold where this chemistry could be initiated. Our findings suggest a protective function of immunoglobulins against 1O2* and raise the question of whether the need to detoxify 1O2* has played a decisive role in the evolution of the immunoglobulin fold.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wentworth , P Jr -- Jones, L H -- Wentworth, A D -- Zhu, X -- Larsen, N A -- Wilson, I A -- Xu, X -- Goddard , W A 3rd -- Janda, K D -- Eschenmoser, A -- Lerner, R A -- CA27489/CA/NCI NIH HHS/ -- GM43858/GM/NIGMS NIH HHS/ -- HD 36385/HD/NICHD NIH HHS/ -- New York, N.Y. -- Science. 2001 Sep 7;293(5536):1806-11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11546867" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Catalytic/chemistry/*metabolism ; Binding Sites ; Catalysis ; Conserved Sequence ; Crystallography, X-Ray ; Humans ; Hydrogen Peroxide/*metabolism ; Kinetics ; Models, Molecular ; Oxidants/chemistry/*metabolism ; Oxidation-Reduction ; Oxygen/*metabolism ; Protein Conformation ; Singlet Oxygen ; Spectrometry, Mass, Electrospray Ionization ; Thermodynamics ; Tryptophan/metabolism ; Ultraviolet Rays ; Water/*chemistry/*metabolism ; Xenon/metabolism
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  • 56
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-12-03
    Description: The gastric pathogen Helicobacter pylori is known to be able to use molecular hydrogen as a respiratory substrate when grown in the laboratory. We found that hydrogen is available in the gastric mucosa of mice and that its use greatly increased the stomach colonization by H. pylori. Hydrogenase activity in H. pylori is constitutive but increased fivefold upon incubation with hydrogen. Hydrogen concentrations measured in the stomachs of live mice were found to be 10 to 50 times as high as the H. pylori affinity for hydrogen. A hydrogenase mutant strain is much less efficient in its colonization of mice. Therefore, hydrogen present in animals as a consequence of normal colonic flora is an energy-yielding substrate that can facilitate the maintenance of a pathogenic bacterium.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olson, Jonathan W -- Maier, Robert J -- New York, N.Y. -- Science. 2002 Nov 29;298(5599):1788-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, University of Georgia, Athens, GA 30602, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12459589" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Catechol 2,3-Dioxygenase ; Colon/metabolism/microbiology ; *Dioxygenases ; Energy Metabolism ; Fermentation ; Gastric Mucosa/*metabolism/*microbiology ; Gene Expression Regulation, Bacterial ; Genes, Reporter ; Helicobacter pylori/growth & development/*metabolism ; Hydrogen/*metabolism ; Hydrogenase/genetics/*metabolism ; Kinetics ; Mice ; Mutation ; Oxidation-Reduction ; Oxygenases/genetics/metabolism ; Transcription, Genetic
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  • 57
    Publication Date: 2002-03-02
    Description: The second messenger cyclic adenosine monophosphate (cAMP) is the most important modulator of sympathetic control over cardiac contractility. In cardiac myocytes and many other cell types, however, cAMP transduces the signal generated upon stimulation of various receptors and activates different cellular functions, raising the issue of how specificity can be achieved. In the general field of signal transduction, the view is emerging that specificity is guaranteed by tight localization of signaling events. Here, we show that in neonatal rat cardiac myocytes, beta-adrenergic stimulation generates multiple microdomains with increased concentration of cAMP in correspondence with the region of the transverse tubule/junctional sarcoplasmic reticulum membrane. The restricted pools of cAMP show a range of action as small as approximately 1 micrometer, and free diffusion of the second messenger is limited by the activity of phosphodiesterases. Furthermore, we demonstrate that such gradients of cAMP specifically activate a subset of protein kinase A molecules anchored in proximity to the T tubule.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zaccolo, Manuela -- Pozzan, Tullio -- TCP00089/Telethon/Italy -- New York, N.Y. -- Science. 2002 Mar 1;295(5560):1711-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biomedical Sciences and Venetian Institute for Molecular Medicine, University of Padua, Via Orus 2, 35129 Padua, Italy. manuela.zaccolo@unipd.it〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11872839" target="_blank"〉PubMed〈/a〉
    Keywords: 1-Methyl-3-isobutylxanthine/pharmacology ; A Kinase Anchor Proteins ; Adaptor Proteins, Signal Transducing ; Animals ; Animals, Newborn ; Cells, Cultured ; Colforsin/pharmacology ; Cyclic AMP/*metabolism ; Cyclic AMP-Dependent Protein Kinases/metabolism ; Fluorescence ; Green Fluorescent Proteins ; Intracellular Membranes/metabolism ; Kinetics ; Luminescent Proteins ; Myocardium/*cytology/*metabolism/ultrastructure ; Norepinephrine/pharmacology ; Phosphodiesterase Inhibitors/pharmacology ; Proto-Oncogene Proteins/pharmacology ; Rats ; Receptors, Adrenergic, beta/*metabolism ; Recombinant Fusion Proteins/metabolism ; Sarcoplasmic Reticulum/*metabolism ; Second Messenger Systems ; Transfection
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  • 58
    Publication Date: 2002-09-14
    Description: We report a photoactivatable variant of the Aequorea victoria green fluorescent protein (GFP) that, after intense irradiation with 413-nanometer light, increases fluorescence 100 times when excited by 488-nanometer light and remains stable for days under aerobic conditions. These characteristics offer a new tool for exploring intracellular protein dynamics by tracking photoactivated molecules that are the only visible GFPs in the cell. Here, we use the photoactivatable GFP both as a free protein to measure protein diffusion across the nuclear envelope and as a chimera with a lysosomal membrane protein to demonstrate rapid interlysosomal membrane exchange.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Patterson, George H -- Lippincott-Schwartz, Jennifer -- New York, N.Y. -- Science. 2002 Sep 13;297(5588):1873-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12228718" target="_blank"〉PubMed〈/a〉
    Keywords: Aerobiosis ; Amino Acid Substitution ; Antigens, CD/metabolism ; Cell Nucleus/metabolism ; Cytoplasm/metabolism ; *Fluorescence ; Green Fluorescent Proteins ; Intracellular Membranes/metabolism ; Kinetics ; *Light ; Luminescent Proteins/*chemistry/genetics/isolation & purification/*metabolism ; Lysosome-Associated Membrane Glycoproteins ; Lysosomes/*metabolism ; Membrane Glycoproteins/metabolism ; Nuclear Envelope/metabolism ; Protein Engineering ; Protein Transport ; Proteins/*metabolism ; Recombinant Fusion Proteins/metabolism ; Spectrometry, Fluorescence
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  • 59
    Publication Date: 2002-03-09
    Description: Time courses of translocation of fluorescently conjugated proteins to the plasma membrane were simultaneously measured in thousands of individual rat basophilic leukemia cells. We found that the C2 domain---a calcium-sensing, lipid-binding protein module that is an essential regulator of protein kinase C and numerous other proteins---targeted proteins to the plasma membrane transiently if calcium was released from internal stores, and persistently in response to entry of extracellular calcium across the plasma membrane. The C2 domain translocation time courses of stimulated cells clustered into only two primary modes. Hence, the reversible recruitment of families of signaling proteins from one cellular compartment to another is a rapid bifurcation mechanism for inducing discrete states of cellular signaling networks.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Teruel, Mary N -- Meyer, Tobias -- CA83229/CA/NCI NIH HHS/ -- GM062144/GM/NIGMS NIH HHS/ -- HG00057/HG/NHGRI NIH HHS/ -- New York, N.Y. -- Science. 2002 Mar 8;295(5561):1910-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Pharmacology, Stanford University Medical School, 269 Campus Drive, Stanford, CA 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11884760" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacterial Proteins ; Calcium/*metabolism ; *Calcium Signaling ; Cell Membrane/*metabolism ; Cytosol/metabolism ; Fluorescence ; Fluorescent Dyes ; Isoenzymes/chemistry/*metabolism ; Kinetics ; Luminescent Proteins ; Platelet Activating Factor/pharmacology ; Protein Binding ; Protein Kinase C/chemistry/*metabolism ; Protein Structure, Tertiary ; *Protein Transport ; Rats ; Receptors, Cell Surface/*metabolism ; Recombinant Fusion Proteins/metabolism ; Software ; Thapsigargin/pharmacology ; Transfection ; Tumor Cells, Cultured
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  • 60
    Publication Date: 2002-12-03
    Description: The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). Using cell extracts and purified components, we demonstrated that the SMN complex is necessary and sufficient to mediate the ATP-dependent assembly of the core of seven Sm proteins on uridine-rich, small nuclear ribonucleic acids (U snRNAs). In vitro experiments revealed strict requirements for ordered binding of the Sm proteins and the U snRNAs to the SMN complex. Importantly, the SMN complex is necessary to ensure that Sm cores assemble only on correct RNA targets and prevent their otherwise promiscuous association with other RNAs. Thus, the SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, nonspecific binding of Sm proteins to RNAs.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pellizzoni, Livio -- Yong, Jeongsik -- Dreyfuss, Gideon -- New York, N.Y. -- Science. 2002 Nov 29;298(5599):1775-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6148, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12459587" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Carrier Proteins/metabolism ; Cell Extracts ; Cyclic AMP Response Element-Binding Protein ; DEAD Box Protein 20 ; DEAD-box RNA Helicases ; HeLa Cells ; Humans ; Kinetics ; Models, Biological ; Nerve Tissue Proteins/isolation & purification/*metabolism ; Nuclear Proteins/metabolism ; Oligoribonucleotides/metabolism ; Protein Binding ; RNA Helicases/metabolism ; RNA, Small Nuclear/*metabolism ; RNA-Binding Proteins ; Ribonucleoproteins, Small Nuclear/isolation & purification/*metabolism ; SMN Complex Proteins
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  • 61
    Publication Date: 2002-05-25
    Description: We have studied the correlation between structural dynamics and function of the hairpin ribozyme. The enzyme-substrate complex exists in either docked (active) or undocked (inactive) conformations. Using single-molecule fluorescence methods, we found complex structural dynamics with four docked states of distinct stabilities and a strong memory effect where each molecule rarely switches between different docked states. We also found substrate cleavage to be rate-limited by a combination of conformational transitions and reversible chemistry equilibrium. The complex structural dynamics quantitatively explain the heterogeneous cleavage kinetics common to many catalytic RNAs. The intimate coupling of structural dynamics and function is likely a general phenomenon for RNA.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhuang, Xiaowei -- Kim, Harold -- Pereira, Miguel J B -- Babcock, Hazen P -- Walter, Nils G -- Chu, Steven -- GM62357/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 May 24;296(5572):1473-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, Stanford University, Stanford, CA 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029135" target="_blank"〉PubMed〈/a〉
    Keywords: Carbocyanines/metabolism ; Catalysis ; Enzymes, Immobilized ; Fluorescence ; Hydrogen Bonding ; Kinetics ; Nepovirus/genetics ; Nucleic Acid Conformation ; RNA, Catalytic/*chemistry/*metabolism ; RNA, Satellite ; RNA, Viral/*chemistry/*metabolism ; Spectrometry, Fluorescence ; Thermodynamics
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  • 62
    facet.materialart.
    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-02-23
    Description: Internal protein dynamics are intimately connected to enzymatic catalysis. However, enzyme motions linked to substrate turnover remain largely unknown. We have studied dynamics of an enzyme during catalysis at atomic resolution using nuclear magnetic resonance relaxation methods. During catalytic action of the enzyme cyclophilin A, we detect conformational fluctuations of the active site that occur on a time scale of hundreds of microseconds. The rates of conformational dynamics of the enzyme strongly correlate with the microscopic rates of substrate turnover. The present results, together with available structural data, allow a prediction of the reaction trajectory.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Eisenmesser, Elan Zohar -- Bosco, Daryl A -- Akke, Mikael -- Kern, Dorothee -- GM62117/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 22;295(5559):1520-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, Brandeis University, Waltham, MA 02454, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11859194" target="_blank"〉PubMed〈/a〉
    Keywords: Binding Sites ; Catalysis ; Cyclophilin A/*chemistry/*metabolism ; Hydrogen Bonding ; Isomerism ; Kinetics ; Mathematics ; Models, Molecular ; Nuclear Magnetic Resonance, Biomolecular ; Protein Binding ; Protein Conformation
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  • 63
    Publication Date: 2000-06-02
    Description: The mechanism by which a signal recognition particle (SRP) and its receptor mediate protein targeting to the endoplasmic reticulum or to the bacterial plasma membrane is evolutionarily conserved. In Escherichia coli, this reaction is mediated by the Ffh/4.5S RNA ribonucleoprotein complex (Ffh/4.5S RNP; the SRP) and the FtsY protein (the SRP receptor). We have quantified the effects of 4.5S RNA on Ffh-FtsY complex formation by monitoring changes in tryptophan fluorescence. Surprisingly, 4.5S RNA facilitates both assembly and disassembly of the Ffh-FtsY complex to a similar extent. These results provide an example of an RNA molecule facilitating protein-protein interactions in a catalytic fashion.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peluso, P -- Herschlag, D -- Nock, S -- Freymann, D M -- Johnson, A E -- Walter, P -- GM 26494/GM/NIGMS NIH HHS/ -- GM 32384/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Jun 2;288(5471):1640-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10834842" target="_blank"〉PubMed〈/a〉
    Keywords: Bacterial Proteins/chemistry/*metabolism ; Catalysis ; Escherichia coli/metabolism ; *Escherichia coli Proteins ; Guanosine Diphosphate/metabolism ; Guanosine Triphosphate/metabolism ; Guanylyl Imidodiphosphate/metabolism ; Kinetics ; Models, Chemical ; Nucleic Acid Conformation ; Protein Binding ; Protein Conformation ; Protein Structure, Tertiary ; RNA, Bacterial/chemistry/*metabolism ; Receptors, Cytoplasmic and Nuclear/chemistry/*metabolism ; Ribonucleoproteins/chemistry/metabolism ; Signal Recognition Particle/chemistry/*metabolism ; Spectrometry, Fluorescence ; Thermodynamics ; Tryptophan
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  • 64
    Publication Date: 2000-02-26
    Description: Many protein enzymes use general acid-base catalysis as a way to increase reaction rates. The amino acid histidine is optimized for this function because it has a pK(a) (where K(a) is the acid dissociation constant) near physiological pH. The RNA enzyme (ribozyme) from hepatitis delta virus catalyzes self-cleavage of a phosphodiester bond. Reactivity-pH profiles in monovalent or divalent cations, as well as distance to the leaving-group oxygen, implicate cytosine 75 (C75) of the ribozyme as the general acid and ribozyme-bound hydrated metal hydroxide as the general base in the self-cleavage reaction. Moreover, C75 has a pK(a) perturbed to neutrality, making it "histidine-like." Anticooperative interaction is observed between protonated C75 and a metal ion, which serves to modulate the pK(a) of C75. General acid-base catalysis expands the catalytic repertoire of RNA and may provide improved rate acceleration.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nakano, S -- Chadalavada, D M -- Bevilacqua, P C -- GM58709/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Feb 25;287(5457):1493-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Pennsylvania State University, University Park, PA 16802, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10688799" target="_blank"〉PubMed〈/a〉
    Keywords: Base Pairing ; Binding Sites ; Calcium/metabolism ; Catalysis ; Cobalt/metabolism ; Crystallography, X-Ray ; Hepatitis Delta Virus/*chemistry/enzymology ; Hydrogen Bonding ; Hydrogen-Ion Concentration ; Kinetics ; Magnesium/metabolism ; Metals/metabolism ; Models, Chemical ; Models, Molecular ; Nucleic Acid Conformation ; Protons ; RNA, Catalytic/chemistry/*metabolism ; RNA, Viral/chemistry/metabolism ; Static Electricity ; Thermodynamics
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  • 65
    Publication Date: 2000-03-31
    Description: Using an optical-trap/flow-control video microscopy technique, we followed transcription by single molecules of Escherichia coli RNA polymerase in real time over long template distances. These studies reveal that RNA polymerase molecules possess different intrinsic transcription rates and different propensities to pause and stop. The data also show that reversible pausing is a kinetic intermediate between normal elongation and the arrested state. The conformational metastability of RNA polymerase revealed by this single-molecule study of transcription has direct implications for the mechanisms of gene regulation in both bacteria and eukaryotes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Davenport, R J -- Wuite, G J -- Landick, R -- Bustamante, C -- GM-32543/GM/NIGMS NIH HHS/ -- GM-38660/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Mar 31;287(5462):2497-500.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10741971" target="_blank"〉PubMed〈/a〉
    Keywords: DNA, Bacterial/genetics/*metabolism ; DNA-Directed RNA Polymerases/*metabolism ; Escherichia coli/enzymology/*genetics ; Kinetics ; Microscopy, Video ; Models, Genetic ; Optics and Photonics ; RNA, Bacterial/genetics ; RNA, Messenger/*genetics ; Templates, Genetic ; *Transcription, Genetic
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  • 66
    facet.materialart.
    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-03-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Will, C L -- Luhrmann, R -- New York, N.Y. -- Science. 2001 Mar 9;291(5510):1916-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cellular Biochemistry Department, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Gottingen, Germany. cwill1@gwdg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11245200" target="_blank"〉PubMed〈/a〉
    Keywords: Acid Anhydride Hydrolases/*metabolism ; Adenosine Triphosphatases/metabolism ; Adenosine Triphosphate/metabolism ; DEAD-box RNA Helicases ; Fungal Proteins/metabolism ; Kinetics ; Nucleoside-Triphosphatase ; RNA Nucleotidyltransferases/metabolism ; RNA Precursors/metabolism ; RNA, Double-Stranded/*metabolism ; RNA, Small Nuclear/*metabolism ; *RNA-Binding Proteins ; Ribonucleoprotein, U1 Small Nuclear/*metabolism ; Ribonucleoproteins/metabolism ; Ribonucleoproteins, Small Nuclear/*metabolism ; Saccharomyces cerevisiae/genetics/metabolism ; *Saccharomyces cerevisiae Proteins ; Spliceosomes/*metabolism ; Vaccinia virus/genetics/metabolism
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  • 67
    Publication Date: 2001-06-26
    Description: The temporal pattern and relative timing of action potentials among neocortical neurons may carry important information. However, how cortical circuits detect or generate coherent activity remains unclear. Using paired recordings in rat neocortical slices, we found that the firing of fast-spiking cells can reflect the spiking pattern of single-axon pyramidal inputs. Moreover, this property allowed groups of fast-spiking cells interconnected by electrical and gamma-aminobutyric acid (GABA)-releasing (GABAergic) synapses to detect the relative timing of their excitatory inputs. These results indicate that networks of fast-spiking cells may play a role in the detection and promotion of synchronous activity within the neocortex.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Galarreta, M -- Hestrin, S -- EY09120/EY/NEI NIH HHS/ -- EY12114/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 2001 Jun 22;292(5525):2295-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Comparative Medicine, Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA. galarreta@stanford.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11423653" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Axons/physiology ; Excitatory Postsynaptic Potentials ; Female ; In Vitro Techniques ; Interneurons/*physiology ; Kinetics ; Male ; Neocortex/cytology/*physiology ; Nerve Net/*physiology ; Pyramidal Cells/*physiology ; Rats ; Rats, Sprague-Dawley ; Synapses/physiology ; *Synaptic Transmission ; Time Factors ; gamma-Aminobutyric Acid/*metabolism
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  • 68
    Publication Date: 2001-12-26
    Description: The transfer of a hydrogen atom-a proton and an electron-is a fundamental process in chemistry and biology. A variety of hydrogen atom transfer reactions, involving iron complexes, phenols, hydroxylamines, tBuOOH, toluene, and related radicals, are shown to follow the Marcus cross relation. Thus, the Marcus theory formalism based on ground-state energetics and self-exchange rates, originally developed for electron transfer processes, is also valuable for hydrogen atom transfer. Compounds that undergo slow proton transfer (C-H bonds) or slow electron transfer (cobalt complexes) also undergo slow hydrogen atom transfer. Limitations of this approach are also discussed.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Roth, J P -- Yoder, J C -- Won, T J -- Mayer, J M -- 1 F32 GM63383-01/GM/NIGMS NIH HHS/ -- 2 R01 GM50422-05/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2001 Dec 21;294(5551):2524-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, University of Washington, Box 351700, Seattle, WA 98195-1700, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11752572" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry, Physical ; Cobalt/chemistry ; Cyclic N-Oxides/chemistry ; Electrons ; Ferric Compounds/chemistry ; Ferrous Compounds/chemistry ; Free Radicals ; Hydrogen/*chemistry ; Imidazoles/chemistry ; Kinetics ; Magnetic Resonance Spectroscopy ; Mathematics ; Oxidation-Reduction ; Physicochemical Phenomena ; Protons ; Pyrimidines/chemistry ; Thermodynamics
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  • 69
    Publication Date: 2002-02-09
    Description: Light synchronizes mammalian circadian rhythms with environmental time by modulating retinal input to the circadian pacemaker-the suprachiasmatic nucleus (SCN) of the hypothalamus. Such photic entrainment requires neither rods nor cones, the only known retinal photoreceptors. Here, we show that retinal ganglion cells innervating the SCN are intrinsically photosensitive. Unlike other ganglion cells, they depolarized in response to light even when all synaptic input from rods and cones was blocked. The sensitivity, spectral tuning, and slow kinetics of this light response matched those of the photic entrainment mechanism, suggesting that these ganglion cells may be the primary photoreceptors for this system.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Berson, David M -- Dunn, Felice A -- Takao, Motoharu -- EY12793/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 2002 Feb 8;295(5557):1070-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neuroscience, Brown University, Providence, RI, 02912 USA. David_Berson@brown.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11834835" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Axons/ultrastructure ; *Biological Clocks ; *Circadian Rhythm ; Dendrites/ultrastructure ; Isoquinolines ; Kinetics ; Light ; *Light Signal Transduction ; Patch-Clamp Techniques ; Rats ; Rats, Sprague-Dawley ; Retinal Ganglion Cells/chemistry/cytology/*physiology ; Rod Opsins/analysis/physiology ; Suprachiasmatic Nucleus/cytology/*physiology
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  • 70
    Publication Date: 2002-08-24
    Description: Insulin secretion from intact mouse pancreatic islets was investigated with two-photon excitation imaging. Insulin granule exocytosis occurred mainly toward the interstitial space, away from blood vessels. The fusion pore was unusually stable with a lifetime of 1.8 seconds. Opening of the 1.4-nanometer-diameter pore was preceded by unrestricted lateral diffusion of lipids along the inner wall of the pore, supporting the idea that this structure is composed of membrane lipids. When the pore dilated to 12 nanometers, the granules rapidly flattened and discharged their contents. Thus, our methodology reveals fusion pore dynamics in intact tissues at nanometer resolution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Takahashi, Noriko -- Kishimoto, Takuya -- Nemoto, Tomomi -- Kadowaki, Takashi -- Kasai, Haruo -- New York, N.Y. -- Science. 2002 Aug 23;297(5585):1349-52.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell Physiology, National Institute for Physiological Sciences, and the Graduate University of Advanced Studies, Myodaiji, Okazaki 444-8585, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12193788" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Membrane/physiology/*ultrastructure ; Cell Polarity ; Colforsin/pharmacology ; Diffusion ; *Exocytosis ; Extracellular Space ; Fluorescence ; Glucose/pharmacology ; Guinea Pigs ; Image Processing, Computer-Assisted ; Insulin/*secretion ; Intracellular Membranes/physiology/ultrastructure ; Islets of Langerhans/blood supply/*physiology/secretion/*ultrastructure ; Kinetics ; Membrane Fusion ; Membrane Lipids/physiology ; Mice ; Mice, Inbred ICR ; Permeability ; Pyridinium Compounds ; Quaternary Ammonium Compounds ; Rhodamines ; Secretory Vesicles/physiology/*ultrastructure
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  • 71
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2000-07-07
    Description: In Neurospora crassa, white collar 1 (WC-1), a transcriptional activator and positive clock element, is rhythmically expressed from a nonrhythmic steady-state pool of wc-1 transcript, consistent with posttranscriptional regulation of rhythmicity. Mutations in frq influence both the level and periodicity of WC-1 expression, and driven FRQ expression not only depresses its own endogenous levels, but positively regulates WC-1 synthesis with a lag of about 8 hours, a delay similar to that seen in the wild-type clock. FRQ thus plays dual roles in the Neurospora clock and thereby, with WC-1, forms a second feedback loop that would promote robustness and stability in this circadian system. The existence also of interlocked loops in Drosophila melanogaster and mouse clocks suggests that such interlocked loops may be a conserved aspect of circadian timing systems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, K -- Loros, J J -- Dunlap, J C -- MH44651/MH/NIMH NIH HHS/ -- R37-GM 34985/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Jul 7;289(5476):107-10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Dartmouth Medical School, Hanover, NH 03755-3844, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10884222" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; *Circadian Rhythm ; DNA-Binding Proteins/biosynthesis/chemistry/genetics/*metabolism ; Darkness ; Feedback ; Fungal Proteins/genetics/*metabolism ; Gene Expression Regulation, Fungal ; Humans ; Kinetics ; Light ; Molecular Sequence Data ; Mutation ; Neurospora crassa/genetics/metabolism/*physiology ; Phosphorylation ; RNA, Fungal/genetics/metabolism ; RNA, Messenger/genetics/metabolism ; Sequence Alignment ; Signal Transduction ; Transcription Factors/biosynthesis/chemistry/genetics/*metabolism
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  • 72
    Publication Date: 2000-08-26
    Description: Prion proteins can serve as genetic elements by adopting distinct physical and functional states that are self-perpetuating and heritable. The critical region of one prion protein, Sup35, is initially unstructured in solution and then forms self-seeded amyloid fibers. We examined in vitro the mechanism by which this state is attained and replicated. Structurally fluid oligomeric complexes appear to be crucial intermediates in de novo amyloid nucleus formation. Rapid assembly ensues when these complexes conformationally convert upon association with nuclei. This model for replicating protein-based genetic information, nucleated conformational conversion, may be applicable to other protein assembly processes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Serio, T R -- Cashikar, A G -- Kowal, A S -- Sawicki, G J -- Moslehi, J J -- Serpell, L -- Arnsdorf, M F -- Lindquist, S L -- GM025874/GM/NIGMS NIH HHS/ -- GM57840/GM/NIGMS NIH HHS/ -- P41-RR017777/RR/NCRR NIH HHS/ -- New York, N.Y. -- Science. 2000 Aug 25;289(5483):1317-21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Genetics and Cell Biology, Howard Hughes Medical Institute, University of Chicago, Chicago, IL 60637, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10958771" target="_blank"〉PubMed〈/a〉
    Keywords: Amyloid/*chemistry ; Biopolymers/chemistry ; Centrifugation, Density Gradient ; Circular Dichroism ; Electrophoresis, Polyacrylamide Gel ; Endopeptidases/metabolism ; Fungal Proteins/*chemistry/metabolism/ultrastructure ; Kinetics ; Light ; Micelles ; Microscopy, Atomic Force ; Microscopy, Electron ; Models, Chemical ; Peptide Termination Factors ; Prions/*chemistry/metabolism/ultrastructure ; Protein Conformation ; Protein Folding ; *Saccharomyces cerevisiae Proteins ; Scattering, Radiation ; Solubility ; Sonication
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  • 73
    Publication Date: 2001-03-10
    Description: Assessing the energy costs of development in extreme environments is important for understanding how organisms can exist at the margins of the biosphere. Macromolecular turnover rates of RNA and protein were measured at -1.5 degrees C during early development of an Antarctic sea urchin. Contrary to expectations of low synthesis with low metabolism at low temperatures, protein and RNA synthesis rates exhibited temperature compensation and were equivalent to rates in temperate sea urchin embryos. High protein metabolism with a low metabolic rate is energetically possible in this Antarctic sea urchin because the energy cost of protein turnover, 0.45 joules per milligram of protein, is 1/25th the values reported for other animals.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marsh, A G -- Maxson , R E Jr -- Manahan, D T -- New York, N.Y. -- Science. 2001 Mar 9;291(5510):1950-2. Epub 2001 Feb 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11239152" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antarctic Regions ; Blastocyst/metabolism ; Cold Temperature ; Embryo, Nonmammalian/metabolism ; Energy Metabolism ; Half-Life ; Kinetics ; *Oxygen Consumption ; *Protein Biosynthesis ; Proteins/metabolism ; RNA/*biosynthesis/metabolism ; RNA, Messenger/biosynthesis/metabolism ; Sea Urchins/*embryology/growth & development/*metabolism ; Temperature
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  • 74
    Publication Date: 2001-07-07
    Description: The existence of a large number of receptors coupled to heterotrimeric guanine nucleotide binding proteins (G proteins) raises the question of how a particular receptor selectively regulates specific targets. We provide insight into this question by identifying a prototypical macromolecular signaling complex. The beta(2) adrenergic receptor was found to be directly associated with one of its ultimate effectors, the class C L-type calcium channel Ca(v)1.2. This complex also contained a G protein, an adenylyl cyclase, cyclic adenosine monophosphate-dependent protein kinase, and the counterbalancing phosphatase PP2A. Our electrophysiological recordings from hippocampal neurons demonstrate highly localized signal transduction from the receptor to the channel. The assembly of this signaling complex provides a mechanism that ensures specific and rapid signaling by a G protein-coupled receptor.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Davare, M A -- Avdonin, V -- Hall, D D -- Peden, E M -- Burette, A -- Weinberg, R J -- Horne, M C -- Hoshi, T -- Hell, J W -- AG00213/AG/NIA NIH HHS/ -- AG17502/AG/NIA NIH HHS/ -- GM08688/GM/NIGMS NIH HHS/ -- GM56900/GM/NIGMS NIH HHS/ -- HL61645/HL/NHLBI NIH HHS/ -- NS35563/NS/NINDS NIH HHS/ -- NS39444/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 2001 Jul 6;293(5527):98-101.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, University of Wisconsin, Madison, WI 53706, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11441182" target="_blank"〉PubMed〈/a〉
    Keywords: Adenylyl Cyclases/metabolism ; Adrenergic beta-2 Receptor Agonists ; Albuterol/pharmacology ; Animals ; Calcium Channels, L-Type/genetics/*metabolism ; Cell Line ; Cell Membrane/metabolism ; Cyclic AMP-Dependent Protein Kinases/metabolism ; Electric Conductivity ; Fluorescent Antibody Technique ; Heterotrimeric GTP-Binding Proteins/metabolism ; Humans ; Isoproterenol/pharmacology ; Kinetics ; Macromolecular Substances ; Neurons/cytology/drug effects/enzymology/metabolism ; Phosphoprotein Phosphatases/metabolism ; Precipitin Tests ; Prosencephalon/cytology/metabolism ; Protein Binding ; Pyramidal Cells/cytology/drug effects/enzymology/metabolism ; Rats ; Receptors, Adrenergic, beta-2/genetics/*metabolism ; *Signal Transduction ; Substrate Specificity
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  • 75
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-02-07
    Description: We describe a heptameric protein pore that has been engineered to accommodate two different cyclodextrin adapters simultaneously within the lumen of a transmembrane beta barrel. The volume between the adapters is a cavity of approximately 4400 cubic angstroms. Analysis of single-channel recordings reveals that individual charged organic molecules can be pulled into the cavity by an electrical potential. Once trapped, an organic molecule shuttles back and forth between the adapters for hundreds of milliseconds. Such self-assembling nanostructures are of interest for the fabrication of multianalyte sensors and could provide a means to control chemical reactions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gu, L Q -- Cheley, S -- Bayley, H -- New York, N.Y. -- Science. 2001 Jan 26;291(5504):636-40.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medical Biochemistry and Genetics, Texas A&M University System Health Science Center, College Station, TX 77843, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11158673" target="_blank"〉PubMed〈/a〉
    Keywords: Adamantane/*analogs & derivatives/*chemistry/metabolism ; Bacterial Toxins/*chemistry/metabolism ; Binding Sites ; Cyclodextrins/*chemistry/metabolism ; Dicarboxylic Acids/*chemistry/metabolism ; Electric Conductivity ; Hemolysin Proteins/*chemistry/metabolism ; Kinetics ; Membrane Potentials ; Models, Molecular ; Mutagenesis, Site-Directed ; Protein Conformation ; *Protein Engineering ; Thermodynamics ; *beta-Cyclodextrins
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  • 76
    Publication Date: 2001-10-27
    Description: Single-molecule imaging techniques were used to reveal the binding of individual cyclic adenosine 3',5'-monophosphate molecules to heterotrimeric guanine nucleotide-binding protein coupled receptors on the surface of living Dictyostelium discoideum cells. The binding sites were uniformly distributed and diffused rapidly in the plane of the membrane. The probabilities of individual association and dissociation events were greater for receptors at the anterior end of the cell. Agonist-induced receptor phosphorylation had little effect on any of the monitored properties, whereas G protein coupling influenced the binding kinetics. These observations illustrate the dynamic properties of receptors involved in gradient sensing and suggest that these may be polarized in chemotactic cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ueda, M -- Sako, Y -- Tanaka, T -- Devreotes, P -- Yanagida, T -- New York, N.Y. -- Science. 2001 Oct 26;294(5543):864-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Recognition and Formation, Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Corporation (JST)., Osaka 562-0035, Japan. ueda@phys1.med.osaka-u.ac.jp〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11679673" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Carbocyanines/metabolism ; Cell Membrane/metabolism ; *Chemotaxis ; Cyclic AMP/*metabolism ; Dictyostelium/cytology/genetics/metabolism/*physiology ; Diffusion ; Guanosine Diphosphate/pharmacology ; Guanosine Triphosphate/pharmacology ; Heterotrimeric GTP-Binding Proteins/genetics/*metabolism ; Kinetics ; Microscopy, Fluorescence ; Mutation ; Phosphorylation ; Pseudopodia/metabolism ; Receptors, Cyclic AMP/*metabolism ; *Signal Transduction
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 77
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2001-01-06
    Description: Neurons encode information and communicate via action potentials, which are generated following the summation of synaptic events. It is commonly assumed that action potentials reset the membrane potential completely, allowing another round of synaptic integration to begin. We show here that the conductances underlying the action potential act instead as a variable reset of synaptic integration. The strength of this reset is cell type-specific and depends on the kinetics, location, and timing of the synaptic input. As a consequence, distal synapses, as well as inputs mediated by N-methyl-d-aspartate receptor activation, can contribute disproportionately to synaptic integration during action potential firing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hausser, M -- Major, G -- Stuart, G J -- New York, N.Y. -- Science. 2001 Jan 5;291(5501):138-41.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology, University College London, Gower Street, London WC1E 6BT, UK. m.hausser@ucl.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11141567" target="_blank"〉PubMed〈/a〉
    Keywords: *Action Potentials/drug effects ; Animals ; Computer Simulation ; Dendrites/drug effects/physiology ; Electric Stimulation ; *Excitatory Postsynaptic Potentials/drug effects ; Kinetics ; Magnesium/pharmacology ; Models, Neurological ; Neocortex/cytology/physiology ; Patch-Clamp Techniques ; Purkinje Cells/*physiology ; Pyramidal Cells/*physiology ; Rats ; Receptors, AMPA/physiology ; Receptors, N-Methyl-D-Aspartate/physiology ; Synapses/physiology ; *Synaptic Transmission ; Tetrodotoxin/pharmacology
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  • 78
    Publication Date: 2001-04-28
    Description: Here we use mechanical force to induce the unfolding and refolding of single RNA molecules: a simple RNA hairpin, a molecule containing a three-helix junction, and the P5abc domain of the Tetrahymena thermophila ribozyme. All three molecules (P5abc only in the absence of Mg2+) can be mechanically unfolded at equilibrium, and when kept at constant force within a critical force range, are bi-stable and hop between folded and unfolded states. We determine the force-dependent equilibrium constants for folding/unfolding these single RNA molecules and the positions of their transition states along the reaction coordinate.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liphardt, J -- Onoa, B -- Smith, S B -- Tinoco, I Jr -- Bustamante, C -- GM-10840/GM/NIGMS NIH HHS/ -- GM-32543/GM/NIGMS NIH HHS/ -- R01 GM010840/GM/NIGMS NIH HHS/ -- R01 GM010840-42/GM/NIGMS NIH HHS/ -- R01 GM010840-43/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2001 Apr 27;292(5517):733-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA. jliphard@alice.berkeley.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11326101" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Sequence ; Edetic Acid ; Kinetics ; Magnesium ; Microspheres ; Molecular Sequence Data ; *Nucleic Acid Conformation ; Polystyrenes ; RNA/*chemistry ; RNA Stability ; RNA, Catalytic/*chemistry ; Stress, Mechanical ; Tetrahymena thermophila ; Thermodynamics
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  • 79
    Publication Date: 2001-12-12
    Description: Calcium (Ca2+) influx through Ca2+-permeable ion channels plays a pivotal role in a variety of neuronal signaling processes, and negative-feedback control of this influx by Ca2+ itself is often equally important for modulation of such signaling. Negative modulation by Ca2+ through calmodulin (CaM) on cyclic nucleotide-gated (CNG) channels underlies the adaptation of olfactory receptor neurons to odorants. We show that this feedback requires two additional subunits of the native olfactory channel, CNGA4 and CNGB1b, even though the machinery for CaM binding and modulation is present in the principal subunit CNGA2. This provides a rationale for the presence of three distinct subunits in the native olfactory channel and underscores the subtle link between the molecular make-up of an ion channel and the physiological function it subserves.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bradley, J -- Reuter, D -- Frings, S -- New York, N.Y. -- Science. 2001 Dec 7;294(5549):2176-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Biologische Informationsverarbeitung, Forschungszentrum Julich, 52425 Julich, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11739960" target="_blank"〉PubMed〈/a〉
    Keywords: *Adaptation, Physiological ; Animals ; Calcium/metabolism/pharmacology ; Calcium Signaling ; Calmodulin/*metabolism/pharmacology ; Cell Line ; Cyclic AMP/*metabolism ; Cyclic Nucleotide-Gated Cation Channels ; Feedback, Physiological ; Humans ; Ion Channel Gating ; Ion Channels/metabolism/*physiology ; Kinetics ; *Odors ; Olfactory Receptor Neurons/*physiology ; Patch-Clamp Techniques ; Photolysis ; Protein Subunits ; Rats ; Recombinant Proteins/metabolism
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  • 80
    Publication Date: 2001-12-12
    Description: Heteromultimeric cyclic nucleotide-gated (CNG) channels play a central role in the transduction of odorant signals and subsequent adaptation. The contributions of individual subunits to native channel function in olfactory receptor neurons remain unclear. Here, we show that the targeted deletion of the mouse CNGA4 gene, which encodes a modulatory CNG subunit, results in a defect in odorant-dependent adaptation. Channels in excised membrane patches from the CNGA4 null mouse exhibited slower Ca2+-calmodulin-mediated channel desensitization. Thus, the CNGA4 subunit accelerates the Ca2+-mediated negative feedback in olfactory signaling and allows rapid adaptation in this sensory system.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2885906/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2885906/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Munger, S D -- Lane, A P -- Zhong, H -- Leinders-Zufall, T -- Yau, K W -- Zufall, F -- Reed, R R -- R37 EY006837/EY/NEI NIH HHS/ -- R37 EY006837-13/EY/NEI NIH HHS/ -- R37 EY006837-14/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 2001 Dec 7;294(5549):2172-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11739959" target="_blank"〉PubMed〈/a〉
    Keywords: 1-Methyl-3-isobutylxanthine/pharmacology ; *Adaptation, Physiological ; Animals ; Calcium/*metabolism ; Calcium Signaling ; Calmodulin/*metabolism ; Cyclic AMP/metabolism ; Cyclic Nucleotide-Gated Cation Channels ; Cyclohexanols/pharmacology ; Electrophysiology ; Gene Targeting ; Ion Channel Gating ; Ion Channels/*genetics/*physiology ; Kinetics ; Mice ; Mice, Inbred C57BL ; *Monoterpenes ; *Odors ; Olfactory Bulb/physiology ; Olfactory Mucosa/physiology ; Olfactory Receptor Neurons/metabolism/*physiology ; Protein Subunits ; Terpenes/pharmacology
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  • 81
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2002-11-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Couzin, Jennifer -- New York, N.Y. -- Science. 2002 Nov 22;298(5598):1538.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12446883" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Nucleus/*metabolism ; Computer Simulation ; Fluorescent Dyes ; Genes ; Kinetics ; Microscopy ; Models, Genetic ; Pol1 Transcription Initiation Complex Proteins/metabolism ; RNA Polymerase I/*metabolism ; RNA Polymerase II/metabolism ; *Transcription, Genetic
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  • 82
    Publication Date: 2002-04-16
    Description: A practical, inexpensive, green chemical process for degrading environmental pollutants is greatly needed, especially for persistent chlorinated pollutants. Here we describe the activation of hydrogen peroxide by tetraamidomacrocylic ligand (TAML) iron catalysts, to destroy the priority pollutants pentachlorophenol (PCP) and 2,4,6-trichlorophenol (TCP). In water, in minutes, under ambient conditions of temperature and pressure, PCP and TCP are completely destroyed at catalyst:substrate ratios of 1:715 and 1:2000, respectively. The fate of about 90% of the carbon and about 99% of the chlorine has been determined in each case. Neither dioxins nor any other toxic compounds are detectable products, and the catalysts themselves show low toxicity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gupta, Sayam Sen -- Stadler, Matthew -- Noser, Christopher A -- Ghosh, Anindya -- Steinhoff, Bradley -- Lenoir, Dieter -- Horwitz, Colin P -- Schramm, Karl-Werner -- Collins, Terrence J -- GM44867-05/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Apr 12;296(5566):326-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11951040" target="_blank"〉PubMed〈/a〉
    Keywords: Catalysis ; Chlorine Compounds/chemistry ; Chlorophenols/*chemistry ; Dioxins/chemistry ; Environmental Pollutants ; Ferric Compounds/*chemistry/toxicity ; Gas Chromatography-Mass Spectrometry ; Heterocyclic Compounds with 4 or More Rings/*chemistry/toxicity ; Hydrogen Peroxide/*chemistry ; Hydrogen-Ion Concentration ; Kinetics ; Magnetic Resonance Spectroscopy ; Oxidation-Reduction ; Pentachlorophenol/*chemistry ; Pressure ; Spectrometry, Mass, Electrospray Ionization ; Temperature
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  • 83
    Publication Date: 2002-11-26
    Description: We have analyzed the kinetics of assembly and elongation of the mammalian RNA polymerase I complex on endogenous ribosomal genes in the nuclei of living cells with the use of in vivo microscopy. We show that components of the RNA polymerase I machinery are brought to ribosomal genes as distinct subunits and that assembly occurs via metastable intermediates. With the use of computational modeling of imaging data, we have determined the in vivo elongation time of the polymerase, and measurements of recruitment and incorporation frequencies show that incorporation of components into the assembling polymerase is inefficient. Our data provide a kinetic and mechanistic framework for the function of a mammalian RNA polymerase in living cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dundr, Miroslav -- Hoffmann-Rohrer, Urs -- Hu, Qiyue -- Grummt, Ingrid -- Rothblum, Lawrence I -- Phair, Robert D -- Misteli, Tom -- New York, N.Y. -- Science. 2002 Nov 22;298(5598):1623-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Cancer Institute (NCI), National Institutes of Health, Bethesda, MD 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12446911" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Catalytic Domain ; Cell Line ; Cell Nucleolus/metabolism ; Cell Nucleus/*metabolism ; Computer Simulation ; DNA, Ribosomal/genetics ; Fluorescence ; Fluorescence Recovery After Photobleaching ; Fluorescent Dyes ; Green Fluorescent Proteins ; Haplorhini ; Humans ; In Situ Hybridization, Fluorescence ; Kinetics ; Least-Squares Analysis ; Luminescent Proteins ; Microscopy ; Pol1 Transcription Initiation Complex Proteins/metabolism ; Probability ; Promoter Regions, Genetic ; Protein Subunits ; RNA Polymerase I/genetics/*metabolism ; Recombinant Fusion Proteins/metabolism ; *Transcription, Genetic ; Transfection
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  • 84
    Publication Date: 2002-08-31
    Description: The latitudinal gradient of increasing biodiversity from poles to equator is one of the most prominent but least understood features of life on Earth. Here we show that species diversity can be predicted from the biochemical kinetics of metabolism. We first demonstrate that the average energy flux of populations is temperature invariant. We then derive a model that quantitatively predicts how species diversity increases with environmental temperature. Predictions are supported by data for terrestrial, freshwater, and marine taxa along latitudinal and elevational gradients. These results establish a thermodynamic basis for the regulation of species diversity and the organization of ecological communities.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Allen, Andrew P -- Brown, James H -- Gillooly, James F -- New York, N.Y. -- Science. 2002 Aug 30;297(5586):1545-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA. drewa@unm.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12202828" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Constitution ; *Ecosystem ; Kinetics ; *Models, Biological ; Plants ; Temperature ; Thermodynamics
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  • 85
    Publication Date: 2002-01-19
    Description: The separate components of nucleocytoplasmic transport have been well characterized, including the key regulatory role of Ran, a guanine nucleotide triphosphatase. However, the overall system behavior in intact cells is difficult to analyze because the dynamics of these components are interdependent. We used a combined experimental and computational approach to study Ran transport in vivo. The resulting model provides the first quantitative picture of Ran flux between the nuclear and cytoplasmic compartments in eukaryotic cells. The model predicts that the Ran exchange factor RCC1, and not the flux capacity of the nuclear pore complex (NPC), is the crucial regulator of steady-state flux across the NPC. Moreover, it provides the first estimate of the total in vivo flux (520 molecules per NPC per second and predicts that the transport system is robust.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Smith, Alicia E -- Slepchenko, Boris M -- Schaff, James C -- Loew, Leslie M -- Macara, Ian G -- GM-50526/GM/NIGMS NIH HHS/ -- NCRR-RR13186/RR/NCRR NIH HHS/ -- NIH-GM-20438/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2002 Jan 18;295(5554):488-91.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Cell Signaling, Department of Pharmacology, University of Virginia, Charlottesville, VA 22908, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11799242" target="_blank"〉PubMed〈/a〉
    Keywords: Active Transport, Cell Nucleus ; Animals ; *Cell Cycle Proteins ; Cell Line ; Cell Nucleus/metabolism ; *Computer Simulation ; Cricetinae ; Cytoplasm/metabolism ; Diffusion ; Fluorescence ; Guanine Nucleotide Exchange Factors/metabolism ; Guanosine Triphosphate/metabolism ; Kinetics ; Mathematics ; *Models, Biological ; Mutation ; Nuclear Pore/*metabolism ; *Nuclear Proteins ; Nucleocytoplasmic Transport Proteins/metabolism ; Recombinant Proteins/metabolism ; Temperature ; ran GTP-Binding Protein/genetics/*metabolism
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  • 86
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2000-09-01
    Description: The vomeronasal organ (VNO) of mammals plays an essential role in the detection of pheromones. We obtained simultaneous recordings of action potentials from large subsets of VNO neurons. These cells responded to components of urine by increasing their firing rate. This chemosensory activation required phospholipase C function. Unlike most other sensory neurons, VNO neurons did not adapt under prolonged stimulus exposure. The full time course of the VNO spiking response is captured by a simple quantitative model of ligand binding. Many individual VNO neurons were strongly selective for either male or female mouse urine, with the effective concentrations differing as much as a thousandfold. These results establish a framework for understanding sensory coding in the vomeronasal system.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Holy, T E -- Dulac, C -- Meister, M -- New York, N.Y. -- Science. 2000 Sep 1;289(5484):1569-72.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA. timholy@mcb.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10968796" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Chemoreceptor Cells/metabolism ; Female ; Kinetics ; Ligands ; Male ; Mice ; Mice, Inbred DBA ; Models, Biological ; Neurons, Afferent/*physiology ; Pheromones/physiology/*urine ; Potassium/pharmacology ; Signal Transduction ; Type C Phospholipases/antagonists & inhibitors/metabolism ; Urine ; Vomeronasal Organ/*physiology
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  • 87
    facet.materialart.
    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2000-07-06
    Description: Diatoms are a key component of marine ecosystems and are extremely important for the biogeochemical cycling of silica and as contributors to global fixed carbon. However, the answers to fundamental questions such as what diatoms can sense in their environment, how they respond to external signals, and what factors control their life strategies are largely unknown. We generated transgenic diatom cells containing the calcium-sensitive photoprotein aequorin to determine whether changes in calcium homeostasis are used to respond to relevant environmental stimuli. Our results reveal sensing systems for detecting and responding to fluid motion (shear stress), osmotic stress, and iron, a key nutrient that controls diatom abundance in the ocean.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Falciatore, A -- d'Alcala, M R -- Croot, P -- Bowler, C -- New York, N.Y. -- Science. 2000 Jun 30;288(5475):2363-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratories of Molecular Plant Biology and Biological Oceanography, Stazione Zoologica Anton Dohrn, Villa Comunale, I-80121 Naples, Italy.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10875921" target="_blank"〉PubMed〈/a〉
    Keywords: *Adaptation, Physiological ; Aequorin/genetics/metabolism ; Biological Transport ; Calcium/*metabolism ; *Calcium Signaling ; Chlorides ; Culture Media ; Diatoms/genetics/*physiology ; Ferric Compounds/metabolism ; Homeostasis ; Hydrogen-Ion Concentration ; Iron/metabolism ; Kinetics ; Osmolar Concentration ; Osmotic Pressure ; Seawater ; Stress, Mechanical ; Transformation, Genetic ; Transgenes
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  • 88
    Publication Date: 2000-02-05
    Description: A system for direct pharmacologic control of protein secretion was developed to allow rapid and pulsatile delivery of therapeutic proteins. A protein was engineered so that it accumulated as aggregates in the endoplasmic reticulum. Secretion was then stimulated by a synthetic small-molecule drug that induces protein disaggregation. Rapid and transient secretion of growth hormone and insulin was achieved in vitro and in vivo. A regulated pulse of insulin secretion resulted in a transient correction of serum glucose concentrations in a mouse model of hyperglycemia. This approach may make gene therapy a viable method for delivery of polypeptides that require rapid and regulated delivery.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rivera, V M -- Wang, X -- Wardwell, S -- Courage, N L -- Volchuk, A -- Keenan, T -- Holt, D A -- Gilman, M -- Orci, L -- Cerasoli, F Jr -- Rothman, J E -- Clackson, T -- New York, N.Y. -- Science. 2000 Feb 4;287(5454):826-30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉ARIAD Gene Therapeutics, 26 Landsdowne Street, Cambridge, MA 02139, USA. vrivera@ariad.com〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10657290" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blood Glucose/metabolism ; Cell Line ; Diabetes Mellitus, Experimental/drug therapy/metabolism ; Drug Delivery Systems ; Endoplasmic Reticulum/*metabolism/secretion ; Furin ; Genetic Therapy ; Golgi Apparatus/metabolism ; Human Growth Hormone/chemistry/metabolism/secretion ; Humans ; Immunophilins/chemistry/genetics/metabolism ; Insulin/secretion ; Kinetics ; Ligands ; Mice ; Proinsulin/chemistry/metabolism ; Protein Engineering ; Recombinant Fusion Proteins/*chemistry/*metabolism/secretion ; Subtilisins/metabolism ; Tacrolimus Binding Proteins ; Tumor Cells, Cultured
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  • 89
    Publication Date: 2000-06-17
    Description: Using fluorescence microscopy, we studied the catalysis by and folding of individual Tetrahymena thermophila ribozyme molecules. The dye-labeled and surface-immobilized ribozymes used were shown to be functionally indistinguishable from the unmodified free ribozyme in solution. A reversible local folding step in which a duplex docks and undocks from the ribozyme core was observed directly in single-molecule time trajectories, allowing the determination of the rate constants and characterization of the transition state. A rarely populated docked state, not measurable by ensemble methods, was observed. In the overall folding process, intermediate folding states and multiple folding pathways were observed. In addition to observing previously established folding pathways, a pathway with an observed folding rate constant of 1 per second was discovered. These results establish single-molecule fluorescence as a powerful tool for examining RNA folding.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhuang, X -- Bartley, L E -- Babcock, H P -- Russell, R -- Ha, T -- Herschlag, D -- Chu, S -- GM49423/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2000 Jun 16;288(5473):2048-51.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, Stanford University, Stanford, CA 94305-4060, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/10856219" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biotinylation ; Carbocyanines ; Catalysis ; Fluorescent Dyes ; Guanosine/metabolism ; Kinetics ; Microscopy, Fluorescence ; Models, Molecular ; *Nucleic Acid Conformation ; Oligoribonucleotides/metabolism ; RNA, Catalytic/*chemistry/*metabolism ; RNA, Protozoan/*chemistry/metabolism ; Tetrahymena thermophila
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  • 90
    Publication Date: 2001-05-12
    Description: In eukaryotic cells, microtubules and their associated motor proteins can be organized into various large-scale patterns. Using a simplified experimental system combined with computer simulations, we examined how the concentrations and kinetic parameters of the motors contribute to their collective behavior. We observed self-organization of generic steady-state structures such as asters, vortices, and a network of interconnected poles. We identified parameter combinations that determine the generation of each of these structures. In general, this approach may become useful for correlating the morphogenetic phenomena taking place in a biological system with the biophysical characteristics of its constituents.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Surrey, T -- Nedelec, F -- Leibler, S -- Karsenti, E -- New York, N.Y. -- Science. 2001 May 11;292(5519):1167-71.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cell Biology and Biophysics Program, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11349149" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Animals ; Antibodies ; Biopolymers/chemistry/metabolism ; *Computer Simulation ; *Drosophila Proteins ; Guanosine Triphosphate/metabolism ; Kinesin/chemistry/metabolism ; Kinetics ; Macromolecular Substances ; Microtubules/*chemistry/drug effects/*metabolism ; Models, Molecular ; Molecular Motor Proteins/*chemistry/*metabolism ; Paclitaxel/pharmacology ; Protein Structure, Quaternary/drug effects ; Tubulin/chemistry/metabolism ; Viscosity
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  • 91
    Publication Date: 2001-02-07
    Description: The motility of kinesin motors is explained by a "hand-over-hand" model in which two heads of kinesin alternately repeat single-headed and double-headed binding with a microtubule. To investigate the binding mode of kinesin at the key nucleotide states during adenosine 5'-triphosphate (ATP) hydrolysis, we measured the mechanical properties of a single kinesin-microtubule complex by applying an external load with optical tweezers. Both the unbinding force and the elastic modulus in solutions containing AMP-PNP (an ATP analog) were twice the value of those in nucleotide-free solution or in the presence of both AMP-PNP and adenosine 5'-diphosphate. Thus, kinesin binds through two heads in the former and one head in the latter two states, which supports a major prediction of the hand-over-hand model.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kawaguchi, K -- Ishiwata, S -- New York, N.Y. -- Science. 2001 Jan 26;291(5504):667-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, School of Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11158681" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Diphosphate/*metabolism ; Adenosine Triphosphate/metabolism ; Adenylyl Imidodiphosphate/*metabolism ; Animals ; Cattle ; Elasticity ; Kinesin/*metabolism ; Kinetics ; Microtubules/metabolism ; Models, Biological ; Swine
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  • 92
    Publication Date: 2001-10-06
    Description: Oligonucleotide microarrays were used to map the detailed topography of chromosome replication in the budding yeast Saccharomyces cerevisiae. The times of replication of thousands of sites across the genome were determined by hybridizing replicated and unreplicated DNAs, isolated at different times in S phase, to the microarrays. Origin activations take place continuously throughout S phase but with most firings near mid-S phase. Rates of replication fork movement vary greatly from region to region in the genome. The two ends of each of the 16 chromosomes are highly correlated in their times of replication. This microarray approach is readily applicable to other organisms, including humans.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Raghuraman, M K -- Winzeler, E A -- Collingwood, D -- Hunt, S -- Wodicka, L -- Conway, A -- Lockhart, D J -- Davis, R W -- Brewer, B J -- Fangman, W L -- New York, N.Y. -- Science. 2001 Oct 5;294(5540):115-21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Department of Mathematics, University of Washington, Seattle, WA 98195, USA. raghu@u.washington.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11588253" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Base Sequence ; Centromere/metabolism ; Chromosomes, Fungal/genetics/*metabolism ; *DNA Replication ; DNA, Fungal/*biosynthesis/genetics/metabolism ; DNA, Intergenic ; Fourier Analysis ; *Genome, Fungal ; Kinetics ; Nucleic Acid Hybridization ; Oligonucleotide Array Sequence Analysis ; *Replication Origin ; *S Phase ; Saccharomyces cerevisiae/cytology/*genetics/metabolism ; Telomere/metabolism ; Transcription, Genetic
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  • 93
    Publication Date: 2002-08-06
    Description: The vibrational dynamics of the retinal chromophore all-trans-to-13-cis photoisomerization in bacteriorhodopsin has been studied with mid-infrared absorption spectroscopy at high time resolution (about 200 femtoseconds). After photoexcitation of light-adapted bacteriorhodopsin, the transient infrared absorption was probed in a broad spectral region, including vibrations with dominant C-C, C=C, and C=NH stretching mode amplitude. All photoproduct modes, especially those around 1190 reciprocal-centimeters that are indicative for a 13-cis configuration of the chromophore, rise with a time constant of approximately 0.5 picosecond. The results presented give direct vibrational-spectroscopic evidence for the isomerization taking place within 0.5 picosecond, as has been suggested by previous optical femtosecond time-resolved experiments but questioned recently by picosecond time-resolved vibrational spectroscopy experiments.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Herbst, Johannes -- Heyne, Karsten -- Diller, Rolf -- New York, N.Y. -- Science. 2002 Aug 2;297(5582):822-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Experimentalphysik, Freie Universitat Berlin, Arnimallee 14, 14195 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12161649" target="_blank"〉PubMed〈/a〉
    Keywords: Bacteriorhodopsins/*chemistry/*metabolism ; Binding Sites ; Isomerism ; Kinetics ; Light ; Photochemistry ; Retinaldehyde/*chemistry/*metabolism ; Spectrophotometry, Infrared/*methods ; Spectroscopy, Fourier Transform Infrared ; Time Factors ; Vibration
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  • 94
    Publication Date: 2002-05-25
    Description: Pyrrolysine is a lysine derivative encoded by the UAG codon in methylamine methyltransferase genes of Methanosarcina barkeri. Near a methyltransferase gene cluster is the pylT gene, which encodes an unusual transfer RNA (tRNA) with a CUA anticodon. The adjacent pylS gene encodes a class II aminoacyl-tRNA synthetase that charges the pylT-derived tRNA with lysine but is not closely related to known lysyl-tRNA synthetases. Homologs of pylS and pylT are found in a Gram-positive bacterium. Charging a tRNA(CUA) with lysine is a likely first step in translating UAG amber codons as pyrrolysine in certain methanogens. Our results indicate that pyrrolysine is the 22nd genetically encoded natural amino acid.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Srinivasan, Gayathri -- James, Carey M -- Krzycki, Joseph A -- New York, N.Y. -- Science. 2002 May 24;296(5572):1459-62.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, Ohio State University, Columbus, OH 43210, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12029131" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Amino Acyl-tRNA Synthetases/chemistry/*genetics/metabolism ; Anticodon ; Archaeal Proteins ; Base Sequence ; Catalytic Domain ; *Codon ; Codon, Terminator ; Kinetics ; Lysine/analogs & derivatives/chemistry/*genetics/metabolism ; Methanosarcina barkeri/chemistry/enzymology/*genetics ; Methyltransferases/genetics/metabolism ; Molecular Sequence Data ; Nucleic Acid Conformation ; Protein Biosynthesis ; RNA, Archaeal/chemistry/genetics/metabolism ; RNA, Transfer/chemistry/*genetics/metabolism ; Recombinant Proteins/metabolism ; Sequence Alignment
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  • 95
    Publication Date: 2003-03-01
    Description: The mechanisms that determine how folding attempts are interrupted to target folding-incompetent proteins for endoplasmic reticulum-associated degradation (ERAD) are poorly defined. Here the alpha-mannosidase I-like protein EDEM was shown to extract misfolded glycoproteins, but not glycoproteins undergoing productive folding, from the calnexin cycle. EDEM overexpression resulted in faster release of folding-incompetent proteins from the calnexin cycle and earlier onset of degradation, whereas EDEM down-regulation prolonged folding attempts and delayed ERAD. Up-regulation of EDEM during ER stress may promote cell recovery by clearing the calnexin cycle and by accelerating ERAD of terminally misfolded polypeptides.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Molinari, Maurizio -- Calanca, Verena -- Galli, Carmela -- Lucca, Paola -- Paganetti, Paolo -- New York, N.Y. -- Science. 2003 Feb 28;299(5611):1397-400.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Research in Biomedicine, CH-6500 Bellinzona, Switzerland. Maurizio.molinari@irb.unisi.ch〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12610306" target="_blank"〉PubMed〈/a〉
    Keywords: Aspartic Acid Endopeptidases/chemistry/*metabolism ; Calnexin/*metabolism ; Cell Line ; Down-Regulation ; Electrophoresis, Polyacrylamide Gel ; Endoplasmic Reticulum/*metabolism ; Glycoproteins/chemistry/*metabolism ; Glycosylation ; Humans ; Kinetics ; Membrane Proteins/*metabolism ; Molecular Weight ; Polysaccharides/metabolism ; Protein Conformation ; Protein Folding ; RNA Interference ; Transfection ; Up-Regulation
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  • 96
    facet.materialart.
    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2003-06-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Molloy, Justin E -- Veigel, Claudia -- New York, N.Y. -- Science. 2003 Jun 27;300(5628):2045-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Physical Biochemistry, National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK. jmolloy@nimr.mrc.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12829773" target="_blank"〉PubMed〈/a〉
    Keywords: Actin Cytoskeleton/*metabolism/ultrastructure ; Actins/metabolism ; Adenosine Triphosphate/metabolism ; Binding Sites ; Fluorescent Dyes/metabolism ; Hydrolysis ; Kinetics ; Microscopy, Fluorescence ; Models, Biological ; Molecular Motor Proteins/chemistry/*metabolism ; Myosin Light Chains/chemistry/metabolism ; Myosin Type V/chemistry/*metabolism ; Protein Structure, Tertiary
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  • 97
    Publication Date: 2003-02-01
    Description: Genetic evidence suggests that inhibition of amyloid fibril formation by small molecules should be effective against amyloid diseases. Known amyloid inhibitors appear to function by shifting the aggregation equilibrium away from the amyloid state. Here, we describe a series of transthyretin amyloidosis inhibitors that functioned by increasing the kinetic barrier associated with misfolding, preventing amyloidogenesis by stabilizing the native state. The trans-suppressor mutation, threonine 119 --〉 methionine 119, which is known to ameliorate familial amyloid disease, also functioned through kinetic stabilization, implying that this small-molecule strategy should be effective in treating amyloid diseases.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hammarstrom, Per -- Wiseman, R Luke -- Powers, Evan T -- Kelly, Jeffery W -- DK 46335/DK/NIDDK NIH HHS/ -- New York, N.Y. -- Science. 2003 Jan 31;299(5607):713-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and The Skaggs Institute of Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12560553" target="_blank"〉PubMed〈/a〉
    Keywords: Amyloidosis/metabolism/*prevention & control ; Humans ; Hydrogen-Ion Concentration ; Kinetics ; Prealbumin/*antagonists & inhibitors/*chemistry/genetics/metabolism ; Protein Denaturation ; *Protein Folding ; Protein Structure, Quaternary ; Protein Subunits ; Suppression, Genetic ; Thermodynamics
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  • 98
    Publication Date: 2003-06-14
    Description: We modeled how the charged levels of different transfer RNAs (tRNAs) that carry the same amino acid (isoacceptors) respond when this amino acid becomes growth-limiting. The charged levels will approach zero for some isoacceptors (such as tRNA2Leu) and remain high for others (such as tRNA4Leu), as determined by the concentrations of isoacceptors and how often their codons occur in protein synthesis. The theory accounts for (synonymous) codons for the same amino acid that are used in ribosome-mediated transcriptional attenuation, the choices of synonymous codons in trans-translating transfermessenger RNA, and the overrepresentation of rare codons in messenger RNAs for amino acid biosynthetic enzymes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Elf, Johan -- Nilsson, Daniel -- Tenson, Tanel -- Ehrenberg, Mans -- New York, N.Y. -- Science. 2003 Jun 13;300(5626):1718-22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cell and Molecular Biology, Uppsala University, Biomedical Center, Box 596, 751 24 Uppsala, Sweden.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12805541" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acids/*metabolism ; Amino Acyl-tRNA Synthetases/metabolism ; *Codon ; Escherichia coli/*genetics/growth & development/metabolism ; Escherichia coli Proteins/biosynthesis/genetics ; Frameshifting, Ribosomal ; Gene Expression Regulation, Bacterial ; Kinetics ; Mathematics ; Models, Genetic ; Operon ; *Protein Biosynthesis ; Pyrophosphatases/genetics/metabolism ; RNA, Bacterial/genetics/metabolism ; RNA, Messenger/genetics/metabolism ; RNA, Transfer/genetics/metabolism ; RNA, Transfer, Amino Acyl/genetics/*metabolism ; Ribosomes/metabolism
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  • 99
    Publication Date: 2003-10-11
    Description: We prepared the primary adduct for the reaction of singlet dioxygen (1O2) with an arylphosphine by using the sterically hindered arylphosphine tris(o-methoxyphenyl)phosphine. The resulting phosphadioxirane has a dioxygen molecule triangularly bound to the phosphorus atom. Olefin trapping experiments show that the phosphadioxirane can undergo nonradical oxygen atom-transfer reactions. Under protic conditions, two different intermediates are formed during the reaction of singlet dioxygen with tris(o-methoxyphenyl)phosphine, namely, the corresponding hydroperoxy arylphosphine and a hydroxy phosphorane. Experiments with other arylphosphines possessing different electronic and steric properties demonstrate that the relative stability of the tris(o-methoxyphenyl)phosphadioxirane is due to both steric and electronic effects.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ho, David G -- Gao, Ruomei -- Celaje, Jeff -- Chung, Ha-Yong -- Selke, Matthias -- GM 08101/GM/NIGMS NIH HHS/ -- GM 64104/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2003 Oct 10;302(5643):259-62.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and Biochemistry, California State University, Los Angeles, Los Angeles, CA 90032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/14551430" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry, Physical ; Epoxy Compounds/*chemistry ; Heterocyclic Compounds, 1-Ring/*chemistry ; Kinetics ; Magnetic Resonance Spectroscopy ; Molecular Structure ; Organophosphorus Compounds/*chemistry ; Oxidation-Reduction ; Oxygen/chemistry ; Peroxides/*chemistry ; Phosphines/chemistry ; Phosphorus ; Physicochemical Phenomena ; Singlet Oxygen/chemistry ; Temperature
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  • 100
    Publication Date: 2003-06-07
    Description: Myosin V is a dimeric molecular motor that moves processively on actin, with the center of mass moving approximately 37 nanometers for each adenosine triphosphate hydrolyzed. We have labeled myosin V with a single fluorophore at different positions in the light-chain domain and measured the step size with a standard deviation of 〈1.5 nanometers, with 0.5-second temporal resolution, and observation times of minutes. The step size alternates between 37 + 2x nm and 37 - 2x, where x is the distance along the direction of motion between the dye and the midpoint between the two heads. These results strongly support a hand-over-hand model of motility, not an inchworm model.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yildiz, Ahmet -- Forkey, Joseph N -- McKinney, Sean A -- Ha, Taekjip -- Goldman, Yale E -- Selvin, Paul R -- AR26846/AR/NIAMS NIH HHS/ -- AR44420/AR/NIAMS NIH HHS/ -- GM65367/GM/NIGMS NIH HHS/ -- PHS 5 T32 GM08276/PH/PHPPO CDC HHS/ -- R01 GM065367/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2003 Jun 27;300(5628):2061-5. Epub 2003 Jun 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Biophysics and Computational Biology, University of Illinois, Urbana-Champaign, IL 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/12791999" target="_blank"〉PubMed〈/a〉
    Keywords: Actin Cytoskeleton/*metabolism/ultrastructure ; Actins/metabolism ; Adenosine Triphosphate/metabolism ; Binding Sites ; Calmodulin ; Carbocyanines/metabolism ; Catalytic Domain ; Dna ; Fluorescence ; Fluorescent Dyes/metabolism ; Kinetics ; Mathematics ; Microscopy, Fluorescence ; *Models, Biological ; Molecular Motor Proteins/chemistry/*metabolism ; Myosin Light Chains/chemistry/metabolism ; Myosin Type V/chemistry/*metabolism ; Protein Structure, Tertiary ; Rhodamines/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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