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  • Humans  (839)
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  • Nature Publishing Group (NPG)  (839)
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  • 1
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    Nature Publishing Group (NPG)
    Publication Date: 2011-01-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cassiday, Laura -- England -- Nature. 2010 Dec 9;468(7325):857-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21222299" target="_blank"〉PubMed〈/a〉
    Keywords: Centers for Disease Control and Prevention (U.S.) ; Disease Outbreaks/prevention & control/statistics & numerical data ; Food Contamination/*prevention & control/statistics & numerical data ; Food Industry/manpower/methods/standards ; *Food Safety/methods ; Foodborne Diseases/epidemiology/microbiology/prevention & control ; Humans ; Public Health/legislation & jurisprudence/manpower/standards/statistics & ; numerical data ; *Sentinel Surveillance ; United States ; United States Department of Agriculture ; United States Food and Drug Administration
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2011-03-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nekaris, K Anne-Isola -- Nijman, Vincent -- Godfrey, Laurie R -- England -- Nature. 2011 Mar 24;471(7339):448. doi: 10.1038/471448c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21430762" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anthropology/*methods ; Culture ; Extinction, Biological ; Humans ; *Interdisciplinary Studies ; *Primates/physiology/psychology ; Tool Use Behavior
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  • 3
    Publication Date: 2011-04-02
    Description: Cpdm (chronic proliferative dermatitis) mice develop chronic dermatitis and an immunodeficiency with increased serum IgM, symptoms that resemble those of patients with X-linked hyper-IgM syndrome and hypohydrotic ectodermal dysplasia (XHM-ED), which is caused by mutations in NEMO (NF-kappaB essential modulator; also known as IKBKG). Spontaneous null mutations in the Sharpin (SHANK-associated RH domain interacting protein in postsynaptic density) gene are responsible for the cpdm phenotype in mice. SHARPIN shows significant similarity to HOIL-1L (also known as RBCK1), a component of linear ubiquitin chain assembly complex (LUBAC), which induces NF-kappaB activation through conjugation of linear polyubiquitin chains to NEMO. Here, we identify SHARPIN as an additional component of LUBAC. SHARPIN-containing complexes can linearly ubiquitinate NEMO and activated NF-kappaB. Thus, we re-define LUBAC as a complex containing SHARPIN, HOIL-1L, and HOIP (also known as RNF31). Deletion of SHARPIN drastically reduced the amount of LUBAC, which resulted in attenuated TNF-alpha- and CD40-mediated activation of NF-kappaB in mouse embryonic fibroblasts (MEFs) or B cells from cpdm mice. Considering the pleomorphic phenotype of cpdm mice, these results confirm the predicted role of LUBAC-mediated linear polyubiquitination in NF-kappaB activation induced by various stimuli, and strongly suggest the involvement of LUBAC-induced NF-kappaB activation in various disorders.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tokunaga, Fuminori -- Nakagawa, Tomoko -- Nakahara, Masaki -- Saeki, Yasushi -- Taniguchi, Masami -- Sakata, Shin-ichi -- Tanaka, Keiji -- Nakano, Hiroyasu -- Iwai, Kazuhiro -- England -- Nature. 2011 Mar 31;471(7340):633-6. doi: 10.1038/nature09815.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biophysics and Biochemistry, Graduate School of Medicine, Osaka University, Suita, Osaka 565-0871, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21455180" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; CD40 Ligand/metabolism ; Carrier Proteins/metabolism ; Cells, Cultured ; HEK293 Cells ; Humans ; Intracellular Signaling Peptides and Proteins/metabolism ; Mice ; Multiprotein Complexes/*chemistry/*metabolism ; NF-kappa B/*metabolism ; Nerve Tissue Proteins/deficiency/genetics/*metabolism ; Tumor Necrosis Factor-alpha/metabolism ; Ubiquitin/*metabolism ; Ubiquitin-Protein Ligase Complexes/chemistry/metabolism ; Ubiquitin-Protein Ligases/metabolism
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  • 4
    Publication Date: 2011-04-26
    Description: The spliceosome is a dynamic macromolecular machine that assembles on pre-messenger RNA substrates and catalyses the excision of non-coding intervening sequences (introns). Four of the five major components of the spliceosome, U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), contain seven Sm proteins (SmB/B', SmD1, SmD2, SmD3, SmE, SmF and SmG) in common. Following export of the U1, U2, U4 and U5 snRNAs to the cytoplasm, the seven Sm proteins, chaperoned by the survival of motor neurons (SMN) complex, assemble around a single-stranded, U-rich sequence called the Sm site in each small nuclear RNA (snRNA), to form the core domain of the respective snRNP particle. Core domain formation is a prerequisite for re-import into the nucleus, where these snRNPs mature via addition of their particle-specific proteins. Here we present a crystal structure of the U4 snRNP core domain at 3.6 A resolution, detailing how the Sm site heptad (AUUUUUG) binds inside the central hole of the heptameric ring of Sm proteins, interacting one-to-one with SmE-SmG-SmD3-SmB-SmD1-SmD2-SmF. An irregular backbone conformation of the Sm site sequence combined with the asymmetric structure of the heteromeric protein ring allows each base to interact in a distinct manner with four key residues at equivalent positions in the L3 and L5 loops of the Sm fold. A comparison of this structure with the U1 snRNP at 5.5 A resolution reveals snRNA-dependent structural changes outside the Sm fold, which may facilitate the binding of particle-specific proteins that are crucial to biogenesis of spliceosomal snRNPs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3103711/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3103711/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Leung, Adelaine K W -- Nagai, Kiyoshi -- Li, Jade -- MC_U105184330/Medical Research Council/United Kingdom -- U.1051.04.016(78933)/Medical Research Council/United Kingdom -- Medical Research Council/United Kingdom -- England -- Nature. 2011 May 26;473(7348):536-9. doi: 10.1038/nature09956. Epub 2011 Apr 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21516107" target="_blank"〉PubMed〈/a〉
    Keywords: Binding Sites ; Crystallography, X-Ray ; Humans ; Models, Molecular ; Nucleotides/chemistry/metabolism ; Protein Folding ; Protein Structure, Tertiary ; RNA/chemistry/metabolism ; Ribonucleoprotein, U1 Small Nuclear/chemistry ; Ribonucleoprotein, U4-U6 Small Nuclear/*biosynthesis/*chemistry/metabolism ; Spliceosomes/chemistry/metabolism ; Structure-Activity Relationship
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2011-04-02
    Description: 〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001322/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001322/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cartwright, Edward J P -- Koser, Claudio U -- Peacock, Sharon J -- G1000803/Medical Research Council/United Kingdom -- England -- Nature. 2011 Mar 31;471(7340):578. doi: 10.1038/471578d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21455159" target="_blank"〉PubMed〈/a〉
    Keywords: Communicable Diseases/epidemiology/microbiology/virology ; Drug Resistance, Microbial ; Genome, Bacterial/*genetics ; Genome, Viral/*genetics ; *Genomics ; Human Genome Project ; Humans ; Molecular Epidemiology/methods/*trends ; *Public Health
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  • 6
    Publication Date: 2011-10-08
    Description: The exchange of the oocyte's genome with the genome of a somatic cell, followed by the derivation of pluripotent stem cells, could enable the generation of specific cells affected in degenerative human diseases. Such cells, carrying the patient's genome, might be useful for cell replacement. Here we report that the development of human oocytes after genome exchange arrests at late cleavage stages in association with transcriptional abnormalities. In contrast, if the oocyte genome is not removed and the somatic cell genome is merely added, the resultant triploid cells develop to the blastocyst stage. Stem cell lines derived from these blastocysts differentiate into cell types of all three germ layers, and a pluripotent gene expression program is established on the genome derived from the somatic cell. This result demonstrates the feasibility of reprogramming human cells using oocytes and identifies removal of the oocyte genome as the primary cause of developmental failure after genome exchange.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Noggle, Scott -- Fung, Ho-Lim -- Gore, Athurva -- Martinez, Hector -- Satriani, Kathleen Crumm -- Prosser, Robert -- Oum, Kiboong -- Paull, Daniel -- Druckenmiller, Sarah -- Freeby, Matthew -- Greenberg, Ellen -- Zhang, Kun -- Goland, Robin -- Sauer, Mark V -- Leibel, Rudolph L -- Egli, Dieter -- England -- Nature. 2011 Oct 5;478(7367):70-5. doi: 10.1038/nature10397.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The New York Stem Cell Foundation Laboratory, New York, New York, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21979046" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Blastocyst/cytology/metabolism ; Cell Differentiation ; *Cellular Reprogramming ; DNA Methylation ; Epigenesis, Genetic ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Developmental ; Genome, Human/genetics ; Germ Layers/cytology/embryology/metabolism ; Humans ; Induced Pluripotent Stem Cells/*cytology/*metabolism ; Oocyte Donation ; Oocytes/*cytology/growth & development/*physiology ; Primary Cell Culture ; Transcription, Genetic ; Triploidy ; Young Adult
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  • 7
    Publication Date: 2011-04-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chafe, Roger -- Born, Karen B -- Slutsky, Arthur S -- Laupacis, Andreas -- England -- Nature. 2011 Apr 28;472(7344):410-1. doi: 10.1038/472410a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Memorial University of Newfoundland, St John's, Newfoundland and Labrador A1B 3V6, Canada. roger.chafe@med.mun.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21525907" target="_blank"〉PubMed〈/a〉
    Keywords: Canada/epidemiology ; *Clinical Trials as Topic/trends ; Evidence-Based Medicine/methods/standards ; Health Education/methods/standards ; Humans ; Internet/*utilization ; Multiple Sclerosis/*complications/epidemiology/surgery/*therapy ; *Patient Advocacy ; Patients/*psychology ; Power (Psychology) ; Therapeutic Equipoise ; Venous Insufficiency/complications/*surgery
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  • 8
    Publication Date: 2011-02-19
    Description: Toll-like receptors (TLRs) function as initiators of inflammation through their ability to sense pathogen-associated molecular patterns and products of tissue damage. Transcriptional activation of many TLR-responsive genes requires an initial de-repression step in which nuclear receptor co-repressor (NCoR) complexes are actively removed from the promoters of target genes to relieve basal repression. Ligand-dependent SUMOylation of liver X receptors (LXRs) has been found to suppress TLR4-induced transcription potently by preventing the NCoR clearance step, but the underlying mechanisms remain enigmatic. Here we provide evidence that coronin 2A (CORO2A), a component of the NCoR complex of previously unknown function, mediates TLR-induced NCoR turnover by a mechanism involving interaction with oligomeric nuclear actin. SUMOylated LXRs block NCoR turnover by binding to a conserved SUMO2/SUMO3-interaction motif in CORO2A and preventing actin recruitment. Intriguingly, the LXR transrepression pathway can itself be inactivated by inflammatory signals that induce calcium/calmodulin-dependent protein kinase IIgamma (CaMKIIgamma)-dependent phosphorylation of LXRs, leading to their deSUMOylation by the SUMO protease SENP3 and release from CORO2A. These findings uncover a CORO2A-actin-dependent mechanism for the de-repression of inflammatory response genes that can be differentially regulated by phosphorylation and by nuclear receptor signalling pathways that control immunity and homeostasis.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464905/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464905/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huang, Wendy -- Ghisletti, Serena -- Saijo, Kaoru -- Gandhi, Meghal -- Aouadi, Myriam -- Tesz, Greg J -- Zhang, Dawn X -- Yao, Joyee -- Czech, Michael P -- Goode, Bruce L -- Rosenfeld, Michael G -- Glass, Christopher K -- 1F31DK083913/DK/NIDDK NIH HHS/ -- CA52599/CA/NCI NIH HHS/ -- DK074868/DK/NIDDK NIH HHS/ -- DK085853/DK/NIDDK NIH HHS/ -- HC088093/HC/NHLBI NIH HHS/ -- P01 DK074868/DK/NIDDK NIH HHS/ -- P50 HL056989/HL/NHLBI NIH HHS/ -- R01 CA052599/CA/NCI NIH HHS/ -- R01 CA097134/CA/NCI NIH HHS/ -- R01 DK091183/DK/NIDDK NIH HHS/ -- R01 HL065445/HL/NHLBI NIH HHS/ -- R01 NS034934/NS/NINDS NIH HHS/ -- R37 DK039949/DK/NIDDK NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2011 Feb 17;470(7334):414-8. doi: 10.1038/nature09703.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cellular and Molecular Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0651, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21331046" target="_blank"〉PubMed〈/a〉
    Keywords: Actins/chemistry/*metabolism ; Animals ; Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism ; Cell Line ; *Gene Expression Regulation/drug effects ; Gene Knockdown Techniques ; HeLa Cells ; Homeostasis/genetics ; Humans ; Inflammation/*genetics ; Lipopolysaccharides/pharmacology ; Mice ; Microfilament Proteins/chemistry/deficiency/genetics/*metabolism ; Orphan Nuclear Receptors/metabolism ; Peptide Hydrolases/metabolism ; Peritonitis/chemically induced/metabolism ; Phosphorylation ; Promoter Regions, Genetic/genetics ; Protein Structure, Tertiary ; Signal Transduction ; Sumoylation ; Thioglycolates/pharmacology ; Toll-Like Receptors/metabolism
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  • 9
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Appel, Adrianne -- England -- Nature. 2011 Dec 14;480(7377):S40-2. doi: 10.1038/480S40a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22169800" target="_blank"〉PubMed〈/a〉
    Keywords: Antineoplastic Agents/therapeutic use ; Boron Compounds/therapeutic use ; Boronic Acids/adverse effects/therapeutic use ; Bortezomib ; Clinical Trials as Topic ; Drug Resistance, Neoplasm/drug effects ; Glycine/analogs & derivatives/therapeutic use ; Humans ; Immunologic Factors/therapeutic use ; Multiple Myeloma/*drug therapy/immunology/pathology ; Oligopeptides/therapeutic use ; Protease Inhibitors/therapeutic use ; Pyrazines/adverse effects/therapeutic use ; Survival Rate ; Thalidomide/adverse effects/analogs & derivatives/therapeutic use ; Threonine/analogs & derivatives/therapeutic use
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  • 10
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    Nature Publishing Group (NPG)
    Publication Date: 2011-10-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Stephen -- England -- Nature. 2011 Oct 19;478(7369):287. doi: 10.1038/478287a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Oxford University Clinical Research Unit. sbaker@oucru.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22012349" target="_blank"〉PubMed〈/a〉
    Keywords: Genomics/economics/*standards ; Humans ; *Poverty ; *Public Health ; Research/economics/trends ; Salmonella typhi/genetics ; *Typhoid Fever
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  • 11
    Publication Date: 2011-02-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Onslow, Mark -- Packman, Ann -- England -- Nature. 2011 Feb 24;470(7335):465; author reply 465. doi: 10.1038/470465b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21350470" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conditioning, Operant ; Humans ; Randomized Controlled Trials as Topic ; Reproducibility of Results ; Stuttering/epidemiology/*therapy ; Treatment Outcome
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  • 12
    Publication Date: 2011-03-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tuveson, David -- Hanahan, Douglas -- England -- Nature. 2011 Mar 17;471(7338):316-7. doi: 10.1038/471316a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21412332" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Clinical Trials, Phase III as Topic ; *Disease Models, Animal ; *Drug Evaluation, Preclinical ; Everolimus ; Humans ; Indoles/*pharmacology/therapeutic use ; Mice ; Neuroendocrine Tumors/*drug therapy/enzymology/metabolism/pathology ; Pancreatic Neoplasms/*drug therapy/enzymology/metabolism/pathology ; Pyrroles/*pharmacology/therapeutic use ; Signal Transduction/drug effects ; Sirolimus/*analogs & derivatives/pharmacology/therapeutic use ; Survival Rate ; *Translational Medical Research
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  • 13
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    Nature Publishing Group (NPG)
    Publication Date: 2011-10-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉zur Hausen, Harald -- England -- Nature. 2011 Oct 12;478(7368):S12. doi: 10.1038/478S12a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21993819" target="_blank"〉PubMed〈/a〉
    Keywords: Behavior/physiology ; Drug Industry ; Female ; Germany ; Human papillomavirus 16/pathogenicity ; Human papillomavirus 18/pathogenicity ; Humans ; Mentors ; *Nobel Prize ; Oncogenic Viruses/isolation & purification/pathogenicity ; Papillomavirus Vaccines ; Smoking Cessation/psychology ; Uterine Cervical Neoplasms/*virology
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  • 14
    Publication Date: 2011-09-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Thomas P -- Mateczun, John M -- Rice, Charles L -- England -- Nature. 2011 Sep 21;477(7365):407. doi: 10.1038/477407a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21938054" target="_blank"〉PubMed〈/a〉
    Keywords: Academies and Institutes/*organization & administration ; Animals ; Humans ; Military Medicine/*organization & administration ; Pathology/*organization & administration ; United States Government Agencies/*organization & administration
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  • 15
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    Nature Publishing Group (NPG)
    Publication Date: 2011-10-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Arellano, Jon I -- Rakic, Pasko -- R01 NS014841/NS/NINDS NIH HHS/ -- England -- Nature. 2011 Oct 19;478(7369):333-4. doi: 10.1038/478333a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22012389" target="_blank"〉PubMed〈/a〉
    Keywords: Brain/*cytology/*growth & development ; *Cell Movement ; Humans ; Neurons/*cytology
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  • 16
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    Nature Publishing Group (NPG)
    Publication Date: 2011-08-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanderson, Katharine -- England -- Nature. 2011 Aug 25;476(7361):477-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21870357" target="_blank"〉PubMed〈/a〉
    Keywords: Astronauts/economics/*education/*supply & distribution ; Humans ; *Private Sector/economics ; Research Personnel/*education/supply & distribution ; Space Flight/*economics/*manpower ; United States ; United States National Aeronautics and Space Administration/economics ; Weightlessness/adverse effects ; Weightlessness Simulation
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  • 17
    Publication Date: 2011-11-29
    Description: Chromatin reorganization is governed by multiple post-translational modifications of chromosomal proteins and DNA. These histone modifications are reversible, dynamic events that can regulate DNA-driven cellular processes. However, the molecular mechanisms that coordinate histone modification patterns remain largely unknown. In metazoans, reversible protein modification by O-linked N-acetylglucosamine (GlcNAc) is catalysed by two enzymes, O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA). However, the significance of GlcNAcylation in chromatin reorganization remains elusive. Here we report that histone H2B is GlcNAcylated at residue S112 by OGT in vitro and in living cells. Histone GlcNAcylation fluctuated in response to extracellular glucose through the hexosamine biosynthesis pathway (HBP). H2B S112 GlcNAcylation promotes K120 monoubiquitination, in which the GlcNAc moiety can serve as an anchor for a histone H2B ubiquitin ligase. H2B S112 GlcNAc was localized to euchromatic areas on fly polytene chromosomes. In a genome-wide analysis, H2B S112 GlcNAcylation sites were observed widely distributed over chromosomes including transcribed gene loci, with some sites co-localizing with H2B K120 monoubiquitination. These findings suggest that H2B S112 GlcNAcylation is a histone modification that facilitates H2BK120 monoubiquitination, presumably for transcriptional activation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fujiki, Ryoji -- Hashiba, Waka -- Sekine, Hiroki -- Yokoyama, Atsushi -- Chikanishi, Toshihiro -- Ito, Saya -- Imai, Yuuki -- Kim, Jaehoon -- He, Housheng Hansen -- Igarashi, Katsuhide -- Kanno, Jun -- Ohtake, Fumiaki -- Kitagawa, Hirochika -- Roeder, Robert G -- Brown, Myles -- Kato, Shigeaki -- England -- Nature. 2011 Nov 27;480(7378):557-60. doi: 10.1038/nature10656.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Molecular and Cellular Biosciences, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22121020" target="_blank"〉PubMed〈/a〉
    Keywords: Acetylglucosamine/*metabolism ; Amino Acid Sequence ; Animals ; Cell Line ; HeLa Cells ; Histones/chemistry/genetics/*metabolism ; Humans ; Models, Molecular ; Mutation ; Protein Structure, Tertiary ; Recombinant Proteins/chemistry/metabolism ; Ubiquitination
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  • 18
    Publication Date: 2011-06-10
    Description: Stem cells reside in a specialized regulatory microenvironment or niche, where they receive appropriate support for maintaining self-renewal and multi-lineage differentiation capacity. The niche may also protect stem cells from environmental insults including cytotoxic chemotherapy and perhaps pathogenic immunity. The testis, hair follicle and placenta are all sites of residence for stem cells and are immune-suppressive environments, called immune-privileged sites, where multiple mechanisms cooperate to prevent immune attack, even enabling prolonged survival of foreign allografts without immunosuppression. We sought to determine if somatic stem-cell niches more broadly are immune-privileged sites by examining the haematopoietic stem/progenitor cell (HSPC) niche in the bone marrow, a site where immune reactivity exists. We observed persistence of HSPCs from allogeneic donor mice (allo-HSPCs) in non-irradiated recipient mice for 30 days without immunosuppression with the same survival frequency compared to syngeneic HSPCs. These HSPCs were lost after the depletion of FoxP3 regulatory T (T(reg)) cells. High-resolution in vivo imaging over time demonstrated marked co-localization of HSPCs with T(reg) cells that accumulated on the endosteal surface in the calvarial and trabecular bone marrow. T(reg) cells seem to participate in creating a localized zone where HSPCs reside and where T(reg) cells are necessary for allo-HSPC persistence. In addition to processes supporting stem-cell function, the niche will provide a relative sanctuary from immune attack.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725645/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725645/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fujisaki, Joji -- Wu, Juwell -- Carlson, Alicia L -- Silberstein, Lev -- Putheti, Prabhakar -- Larocca, Rafael -- Gao, Wenda -- Saito, Toshiki I -- Lo Celso, Cristina -- Tsuyuzaki, Hitoshi -- Sato, Tatsuyuki -- Cote, Daniel -- Sykes, Megan -- Strom, Terry B -- Scadden, David T -- Lin, Charles P -- AI041521/AI/NIAID NIH HHS/ -- CA111519/CA/NCI NIH HHS/ -- HL097748/HL/NHLBI NIH HHS/ -- HL97794/HL/NHLBI NIH HHS/ -- P01 AI041521/AI/NIAID NIH HHS/ -- P01 AI073748/AI/NIAID NIH HHS/ -- P01 CA111519/CA/NCI NIH HHS/ -- P01 CA111519-05/CA/NCI NIH HHS/ -- R01 HL097748/HL/NHLBI NIH HHS/ -- R01 HL097748-02/HL/NHLBI NIH HHS/ -- R01 HL097794/HL/NHLBI NIH HHS/ -- R01 HL097794-02/HL/NHLBI NIH HHS/ -- England -- Nature. 2011 Jun 8;474(7350):216-9. doi: 10.1038/nature10160.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Advanced Microscopy Program, Center for Systems Biology and Wellman Center for Photomedicine, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA. jfujisaki@partners.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21654805" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Survival/immunology ; Cells, Cultured ; Forkhead Transcription Factors/metabolism ; Graft Survival/*immunology ; Hematopoietic Stem Cells/cytology/*immunology ; Humans ; *Imaging, Three-Dimensional ; Interleukin-10/deficiency/genetics/immunology/metabolism ; Mice ; Mice, Inbred BALB C ; Mice, Inbred C57BL ; Stem Cell Niche/cytology/*immunology ; T-Lymphocytes, Regulatory/*immunology/metabolism ; Time Factors ; Transplantation, Homologous/immunology
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  • 19
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hughes, Virginia -- England -- Nature. 2011 Dec 14;480(7377):S48-9. doi: 10.1038/480S48a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22169803" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bone Marrow Transplantation ; Drug Resistance, Neoplasm/drug effects ; Humans ; Mice ; Mice, SCID ; Multiple Myeloma/*drug therapy/*pathology ; Neoplasm Transplantation ; Tumor Microenvironment/drug effects/*physiology ; Xenograft Model Antitumor Assays
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  • 20
    Publication Date: 2011-09-29
    Description: Adipose tissue mass is determined by the storage and removal of triglycerides in adipocytes. Little is known, however, about adipose lipid turnover in humans in health and pathology. To study this in vivo, here we determined lipid age by measuring (14)C derived from above ground nuclear bomb tests in adipocyte lipids. We report that during the average ten-year lifespan of human adipocytes, triglycerides are renewed six times. Lipid age is independent of adipocyte size, is very stable across a wide range of adult ages and does not differ between genders. Adipocyte lipid turnover, however, is strongly related to conditions with disturbed lipid metabolism. In obesity, triglyceride removal rate (lipolysis followed by oxidation) is decreased and the amount of triglycerides stored each year is increased. In contrast, both lipid removal and storage rates are decreased in non-obese patients diagnosed with the most common hereditary form of dyslipidaemia, familial combined hyperlipidaemia. Lipid removal rate is positively correlated with the capacity of adipocytes to break down triglycerides, as assessed through lipolysis, and is inversely related to insulin resistance. Our data support a mechanism in which adipocyte lipid storage and removal have different roles in health and pathology. High storage but low triglyceride removal promotes fat tissue accumulation and obesity. Reduction of both triglyceride storage and removal decreases lipid shunting through adipose tissue and thus promotes dyslipidaemia. We identify adipocyte lipid turnover as a novel target for prevention and treatment of metabolic disease.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3773935/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3773935/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Arner, Peter -- Bernard, Samuel -- Salehpour, Mehran -- Possnert, Goran -- Liebl, Jakob -- Steier, Peter -- Buchholz, Bruce A -- Eriksson, Mats -- Arner, Erik -- Hauner, Hans -- Skurk, Thomas -- Ryden, Mikael -- Frayn, Keith N -- Spalding, Kirsty L -- P41 GM103483/GM/NIGMS NIH HHS/ -- P41 RR013461/RR/NCRR NIH HHS/ -- RR13461/RR/NCRR NIH HHS/ -- England -- Nature. 2011 Sep 25;478(7367):110-3. doi: 10.1038/nature10426.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Karolinska University Hospital, SE-141 86 Stockholm, Sweden. peter.arner@ki.se〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21947005" target="_blank"〉PubMed〈/a〉
    Keywords: Adipocytes/chemistry/metabolism ; Adipose Tissue/cytology/*metabolism ; Adolescent ; Adult ; Aged ; Aged, 80 and over ; Carbon Radioisotopes/analysis ; Cell Aging ; Cell Size ; Child ; Child, Preschool ; Cohort Studies ; DNA/chemistry ; Dyslipidemias/metabolism/pathology ; *Health ; Humans ; Hyperlipidemia, Familial Combined/genetics/metabolism/pathology ; *Lipid Metabolism ; Lipolysis ; Metabolic Diseases/*metabolism ; Middle Aged ; Nuclear Weapons ; Obesity/metabolism ; Subcutaneous Fat/metabolism ; Time Factors ; Triglycerides/analysis/metabolism ; Young Adult
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  • 21
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    Nature Publishing Group (NPG)
    Publication Date: 2011-02-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanderson, Katharine -- England -- Nature. 2011 Feb 10;470(7333):295-6.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21348148" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Computational Biology/education/*manpower ; *Databases, Factual/standards/trends/utilization ; *Documentation/trends ; Humans ; Job Satisfaction ; Mice ; Molecular Sequence Annotation/methods/trends ; Software
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  • 22
    Publication Date: 2011-01-21
    Description: Many tumours are composed of genetically diverse cells; however, little is known about how diversity evolves or the impact that diversity has on functional properties. Here, using xenografting and DNA copy number alteration (CNA) profiling of human BCR-ABL1 lymphoblastic leukaemia, we demonstrate that genetic diversity occurs in functionally defined leukaemia-initiating cells and that many diagnostic patient samples contain multiple genetically distinct leukaemia-initiating cell subclones. Reconstructing the subclonal genetic ancestry of several samples by CNA profiling demonstrated a branching multi-clonal evolution model of leukaemogenesis, rather than linear succession. For some patient samples, the predominant diagnostic clone repopulated xenografts, whereas in others it was outcompeted by minor subclones. Reconstitution with the predominant diagnosis clone was associated with more aggressive growth properties in xenografts, deletion of CDKN2A and CDKN2B, and a trend towards poorer patient outcome. Our findings link clonal diversity with leukaemia-initiating-cell function and underscore the importance of developing therapies that eradicate all intratumoral subclones.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Notta, Faiyaz -- Mullighan, Charles G -- Wang, Jean C Y -- Poeppl, Armando -- Doulatov, Sergei -- Phillips, Letha A -- Ma, Jing -- Minden, Mark D -- Downing, James R -- Dick, John E -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2011 Jan 20;469(7330):362-7. doi: 10.1038/nature09733.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Stem Cell and Developmental Biology, Campbell Family Institute for Cancer Research/Ontario Cancer Institute, Toronto, Ontario M5G 1L7, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21248843" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Survival ; Clone Cells/*metabolism/*pathology ; Cyclin-Dependent Kinase Inhibitor p15/deficiency/genetics ; DNA Copy Number Variations/genetics ; Disease Progression ; *Evolution, Molecular ; Fusion Proteins, bcr-abl/*genetics ; Genes, p16 ; Humans ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Models, Biological ; Neoplasm Transplantation ; Oligonucleotide Array Sequence Analysis ; Philadelphia Chromosome ; Polymorphism, Single Nucleotide/genetics ; Precursor Cell Lymphoblastic Leukemia-Lymphoma/*genetics/*pathology ; Survival Rate ; Transplantation, Heterologous
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  • 23
    Publication Date: 2011-03-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chouard, Tanguy -- England -- Nature. 2011 Mar 10;471(7337):151-3. doi: 10.1038/471151a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21390105" target="_blank"〉PubMed〈/a〉
    Keywords: CREB-Binding Protein/metabolism ; Calcineurin/chemistry/metabolism ; Cell Cycle Proteins/chemistry/metabolism ; Computational Biology ; Crystallization ; Cyclic AMP Response Element-Binding Protein/chemistry/metabolism ; Cyclin-Dependent Kinase Inhibitor Proteins/chemistry/metabolism ; F-Box Proteins/chemistry/metabolism ; Humans ; Models, Biological ; Models, Molecular ; Pliability ; Protein Conformation ; Protein Folding ; *Protein Unfolding ; Proteins/*chemistry/*metabolism ; Saccharomyces cerevisiae Proteins/chemistry/metabolism ; Structure-Activity Relationship ; Tumor Suppressor Protein p53/chemistry/metabolism ; Ubiquitin-Protein Ligases/chemistry/metabolism
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  • 24
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    Nature Publishing Group (NPG)
    Publication Date: 2011-03-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gaskell, George -- Gottweis, Herbert -- England -- Nature. 2011 Mar 10;471(7337):159-60. doi: 10.1038/471159a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉London School of Economics and Political Science, London WC2A 2AE, UK. g.gaskell@lse.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21390108" target="_blank"〉PubMed〈/a〉
    Keywords: *Biological Specimen Banks/statistics & numerical data/utilization ; Europe ; Genetic Privacy/psychology ; Genomics ; Health Knowledge, Attitudes, Practice ; Humans ; Informed Consent ; Male ; Public Opinion ; *Public Relations ; Sample Size ; Tissue Donors/*psychology/*statistics & numerical data/supply & distribution ; Trust
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  • 25
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    Nature Publishing Group (NPG)
    Publication Date: 2011-08-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Funk, Chris -- England -- Nature. 2011 Aug 3;476(7358):7. doi: 10.1038/476007a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Geography Department, University of California, Santa Barbara, USA. cfunk@usgs.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21814237" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/statistics & numerical data/trends ; Climate Change/statistics & numerical data ; Droughts/mortality/*statistics & numerical data ; Food Supply/*statistics & numerical data ; *Forecasting ; Humans ; Somalia/epidemiology ; Starvation/*epidemiology/mortality
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  • 26
    Publication Date: 2011-07-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Christoffels, Vincent -- England -- Nature. 2011 Jun 29;474(7353):585-6. doi: 10.1038/474585a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21720359" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Differentiation ; Heart/*physiology ; Humans ; Myocardial Infarction/*pathology ; Myocardium/*cytology ; Pericardium/*cytology ; *Regeneration ; Stem Cells/*cytology
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  • 27
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lloyd, Keith -- White, Jo -- England -- Nature. 2011 Jun 15;474(7351):277-8. doi: 10.1038/474277a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉College of Medicine, Swansea University, Swansea SA2 8PP, UK. k.r.lloyd@swansea.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21677725" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/economics/*organization & administration ; Democracy ; Depression ; Humans ; *Patient Advocacy ; Schizophrenia/therapy ; Uncertainty
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  • 28
    Publication Date: 2011-04-26
    Description: Neurotransmitter/Na(+) symporters (NSSs) terminate neuronal signalling by recapturing neurotransmitter released into the synapse in a co-transport (symport) mechanism driven by the Na(+) electrochemical gradient. NSSs for dopamine, noradrenaline and serotonin are targeted by the psychostimulants cocaine and amphetamine, as well as by antidepressants. The crystal structure of LeuT, a prokaryotic NSS homologue, revealed an occluded conformation in which a leucine (Leu) and two Na(+) are bound deep within the protein. This structure has been the basis for extensive structural and computational exploration of the functional mechanisms of proteins with a LeuT-like fold. Subsequently, an 'outward-open' conformation was determined in the presence of the inhibitor tryptophan, and the Na(+)-dependent formation of a dynamic outward-facing intermediate was identified using electron paramagnetic resonance spectroscopy. In addition, single-molecule fluorescence resonance energy transfer imaging has been used to reveal reversible transitions to an inward-open LeuT conformation, which involve the movement of transmembrane helix TM1a away from the transmembrane helical bundle. We investigated how substrate binding is coupled to structural transitions in LeuT during Na(+)-coupled transport. Here we report a process whereby substrate binding from the extracellular side of LeuT facilitates intracellular gate opening and substrate release at the intracellular face of the protein. In the presence of alanine, a substrate that is transported approximately 10-fold faster than leucine, we observed alanine-induced dynamics in the intracellular gate region of LeuT that directly correlate with transport efficiency. Collectively, our data reveal functionally relevant and previously hidden aspects of the NSS transport mechanism that emphasize the functional importance of a second substrate (S2) binding site within the extracellular vestibule. Substrate binding in this S2 site appears to act cooperatively with the primary substrate (S1) binding site to control intracellular gating more than 30 A away, in a manner that allows the Na(+) gradient to power the transport mechanism.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178346/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178346/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhao, Yongfang -- Terry, Daniel S -- Shi, Lei -- Quick, Matthias -- Weinstein, Harel -- Blanchard, Scott C -- Javitch, Jonathan A -- DA022413/DA/NIDA NIH HHS/ -- DA023694/DA/NIDA NIH HHS/ -- DA12408/DA/NIDA NIH HHS/ -- DA17293/DA/NIDA NIH HHS/ -- K05 DA022413/DA/NIDA NIH HHS/ -- R00 DA023694/DA/NIDA NIH HHS/ -- R00 DA023694-03/DA/NIDA NIH HHS/ -- R01 DA017293/DA/NIDA NIH HHS/ -- England -- Nature. 2011 Jun 2;474(7349):109-13. doi: 10.1038/nature09971. Epub 2011 Apr 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Molecular Recognition, Columbia University College of Physicians and Surgeons, 630 West 168th Street, New York, New York 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21516104" target="_blank"〉PubMed〈/a〉
    Keywords: Humans ; Ion Channel Gating/*drug effects ; Leucine/metabolism ; Lithium/metabolism ; *Models, Molecular ; Mutation ; Plasma Membrane Neurotransmitter Transport ; Proteins/chemistry/genetics/*metabolism ; Protein Binding/genetics ; Protein Structure, Secondary ; Sodium/metabolism/pharmacology
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  • 29
    Publication Date: 2011-02-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Saper, Clifford B -- England -- Nature. 2011 Feb 10;470(7333):179-81. doi: 10.1038/470179a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21307926" target="_blank"〉PubMed〈/a〉
    Keywords: Aggression/drug effects/*physiology ; Animals ; Cats ; Electric Stimulation ; Female ; Gene Expression Regulation/genetics ; Genes, fos/genetics ; Humans ; Male ; Mice ; Neural Inhibition/drug effects/genetics/physiology ; Neural Pathways/drug effects/physiology ; Neurons/drug effects/physiology ; Rats ; Sex Characteristics ; Sexual Behavior, Animal/drug effects/physiology ; Time Factors ; Ventromedial Hypothalamic Nucleus/anatomy & histology/*cytology/drug ; effects/*physiology ; Violence
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  • 30
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    Publication Date: 2011-10-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ciechanover, Aaron -- England -- Nature. 2011 Oct 12;478(7368):S4. doi: 10.1038/478S4a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21993824" target="_blank"〉PubMed〈/a〉
    Keywords: Alzheimer Disease/drug therapy ; Chemistry/history ; History, 20th Century ; History, 21st Century ; Humans ; Mentors ; *Nobel Prize ; Precision Medicine/methods/trends ; Proteolysis ; Translational Medical Research ; Ubiquitin/*metabolism
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    Publication Date: 2011-04-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pala, Christopher -- England -- Nature. 2011 Mar 31;471(7340):560. doi: 10.1038/471560a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21455149" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Canada/ethnology ; Conservation of Natural Resources/economics/*trends ; Ecosystem ; Forestry/economics/*trends ; Humans ; Population Groups ; Reindeer/physiology ; Risk ; *Trees ; *Wilderness ; Wood
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  • 32
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    Nature Publishing Group (NPG)
    Publication Date: 2011-07-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ruxin, Josh -- Habinshuti, Antoinette -- England -- Nature. 2011 Jun 29;474(7353):572-3. doi: 10.1038/474572a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Columbia University, New York, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21720346" target="_blank"〉PubMed〈/a〉
    Keywords: Demography ; Government Programs/economics/trends ; Humans ; *Population Control/methods/trends ; *Population Density ; Rwanda
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  • 33
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    Nature Publishing Group (NPG)
    Publication Date: 2011-04-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hurst, Laurence D -- England -- Nature. 2011 Mar 31;471(7340):582-3. doi: 10.1038/471582a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21455166" target="_blank"〉PubMed〈/a〉
    Keywords: Continental Population Groups/genetics ; Crohn Disease/*genetics ; Humans ; MicroRNAs/*genetics/metabolism ; Models, Genetic ; Point Mutation/*genetics ; RNA Splicing/genetics ; RNA, Messenger/*genetics/metabolism
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  • 34
    Publication Date: 2011-07-22
    Description: Cellular responses to mechanical forces are crucial in embryonic development and adult physiology, and are involved in numerous diseases, including atherosclerosis, hypertension, osteoporosis, muscular dystrophy, myopathies and cancer. These responses are mediated by load-bearing subcellular structures, such as the plasma membrane, cell-adhesion complexes and the cytoskeleton. Recent work has demonstrated that these structures are dynamic, undergoing assembly, disassembly and movement, even when ostensibly stable. An emerging insight is that transduction of forces into biochemical signals occurs within the context of these processes. This framework helps to explain how forces of varying strengths or dynamic characteristics regulate distinct signalling pathways.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hoffman, Brenton D -- Grashoff, Carsten -- Schwartz, Martin A -- R01 HL075092/HL/NHLBI NIH HHS/ -- England -- Nature. 2011 Jul 20;475(7356):316-23. doi: 10.1038/nature10316.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Robert M. Berne Cardiovascular Research Center, University of Virginia, Charlottesville, Virginia 22908, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21776077" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biophysical Phenomena ; Humans ; Mechanotransduction, Cellular/*physiology ; *Models, Biological ; Subcellular Fractions/metabolism
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  • 35
    Publication Date: 2011-08-26
    Description: Genetic manipulations of insect populations for pest control have been advocated for some time, but there are few cases where manipulated individuals have been released in the field and no cases where they have successfully invaded target populations. Population transformation using the intracellular bacterium Wolbachia is particularly attractive because this maternally-inherited agent provides a powerful mechanism to invade natural populations through cytoplasmic incompatibility. When Wolbachia are introduced into mosquitoes, they interfere with pathogen transmission and influence key life history traits such as lifespan. Here we describe how the wMel Wolbachia infection, introduced into the dengue vector Aedes aegypti from Drosophila melanogaster, successfully invaded two natural A. aegypti populations in Australia, reaching near-fixation in a few months following releases of wMel-infected A. aegypti adults. Models with plausible parameter values indicate that Wolbachia-infected mosquitoes suffered relatively small fitness costs, leading to an unstable equilibrium frequency 〈30% that must be exceeded for invasion. These findings demonstrate that Wolbachia-based strategies can be deployed as a practical approach to dengue suppression with potential for area-wide implementation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hoffmann, A A -- Montgomery, B L -- Popovici, J -- Iturbe-Ormaetxe, I -- Johnson, P H -- Muzzi, F -- Greenfield, M -- Durkan, M -- Leong, Y S -- Dong, Y -- Cook, H -- Axford, J -- Callahan, A G -- Kenny, N -- Omodei, C -- McGraw, E A -- Ryan, P A -- Ritchie, S A -- Turelli, M -- O'Neill, S L -- England -- Nature. 2011 Aug 24;476(7361):454-7. doi: 10.1038/nature10356.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Bio21 Institute, Department of Genetics, The University of Melbourne, Victoria 3010, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21866160" target="_blank"〉PubMed〈/a〉
    Keywords: Aedes/*microbiology/physiology/*virology ; Animals ; Dengue/microbiology/*prevention & control/*transmission/virology ; Dengue Virus/isolation & purification/*physiology ; Drosophila melanogaster/microbiology ; Female ; Humans ; Insect Vectors/microbiology/physiology/virology ; Male ; Pest Control, Biological/*methods ; Queensland ; Time Factors ; Wolbachia/isolation & purification/*physiology
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  • 36
    Publication Date: 2011-03-04
    Description: Palaeontologists characterize mass extinctions as times when the Earth loses more than three-quarters of its species in a geologically short interval, as has happened only five times in the past 540 million years or so. Biologists now suggest that a sixth mass extinction may be under way, given the known species losses over the past few centuries and millennia. Here we review how differences between fossil and modern data and the addition of recently available palaeontological information influence our understanding of the current extinction crisis. Our results confirm that current extinction rates are higher than would be expected from the fossil record, highlighting the need for effective conservation measures.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Barnosky, Anthony D -- Matzke, Nicholas -- Tomiya, Susumu -- Wogan, Guinevere O U -- Swartz, Brian -- Quental, Tiago B -- Marshall, Charles -- McGuire, Jenny L -- Lindsey, Emily L -- Maguire, Kaitlin C -- Mersey, Ben -- Ferrer, Elizabeth A -- R01 GM069801/GM/NIGMS NIH HHS/ -- England -- Nature. 2011 Mar 3;471(7336):51-7. doi: 10.1038/nature09678.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology, University of California, Berkeley, California 94720, USA. barnosky@berkeley.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368823" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biodiversity ; Conservation of Natural Resources/methods/trends ; Earth (Planet) ; Endangered Species/history/*statistics & numerical data/trends ; *Extinction, Biological ; Fossils ; History, 21st Century ; History, Ancient ; Human Activities ; Humans
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  • 37
    Publication Date: 2011-10-14
    Description: The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying selection, and locate constrained elements covering approximately 4.2% of the genome. We use evolutionary signatures and comparisons with experimental data sets to suggest candidate functions for approximately 60% of constrained bases. These elements reveal a small number of new coding exons, candidate stop codon readthrough events and over 10,000 regions of overlapping synonymous constraint within protein-coding exons. We find 220 candidate RNA structural families, and nearly a million elements overlapping potential promoter, enhancer and insulator regions. We report specific amino acid residues that have undergone positive selection, 280,000 non-coding elements exapted from mobile elements and more than 1,000 primate- and human-accelerated elements. Overlap with disease-associated variants indicates that our findings will be relevant for studies of human biology, health and disease.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207357/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207357/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lindblad-Toh, Kerstin -- Garber, Manuel -- Zuk, Or -- Lin, Michael F -- Parker, Brian J -- Washietl, Stefan -- Kheradpour, Pouya -- Ernst, Jason -- Jordan, Gregory -- Mauceli, Evan -- Ward, Lucas D -- Lowe, Craig B -- Holloway, Alisha K -- Clamp, Michele -- Gnerre, Sante -- Alfoldi, Jessica -- Beal, Kathryn -- Chang, Jean -- Clawson, Hiram -- Cuff, James -- Di Palma, Federica -- Fitzgerald, Stephen -- Flicek, Paul -- Guttman, Mitchell -- Hubisz, Melissa J -- Jaffe, David B -- Jungreis, Irwin -- Kent, W James -- Kostka, Dennis -- Lara, Marcia -- Martins, Andre L -- Massingham, Tim -- Moltke, Ida -- Raney, Brian J -- Rasmussen, Matthew D -- Robinson, Jim -- Stark, Alexander -- Vilella, Albert J -- Wen, Jiayu -- Xie, Xiaohui -- Zody, Michael C -- Broad Institute Sequencing Platform and Whole Genome Assembly Team -- Baldwin, Jen -- Bloom, Toby -- Chin, Chee Whye -- Heiman, Dave -- Nicol, Robert -- Nusbaum, Chad -- Young, Sarah -- Wilkinson, Jane -- Worley, Kim C -- Kovar, Christie L -- Muzny, Donna M -- Gibbs, Richard A -- Baylor College of Medicine Human Genome Sequencing Center Sequencing Team -- Cree, Andrew -- Dihn, Huyen H -- Fowler, Gerald -- Jhangiani, Shalili -- Joshi, Vandita -- Lee, Sandra -- Lewis, Lora R -- Nazareth, Lynne V -- Okwuonu, Geoffrey -- Santibanez, Jireh -- Warren, Wesley C -- Mardis, Elaine R -- Weinstock, George M -- Wilson, Richard K -- Genome Institute at Washington University -- Delehaunty, Kim -- Dooling, David -- Fronik, Catrina -- Fulton, Lucinda -- Fulton, Bob -- Graves, Tina -- Minx, Patrick -- Sodergren, Erica -- Birney, Ewan -- Margulies, Elliott H -- Herrero, Javier -- Green, Eric D -- Haussler, David -- Siepel, Adam -- Goldman, Nick -- Pollard, Katherine S -- Pedersen, Jakob S -- Lander, Eric S -- Kellis, Manolis -- 095908/Wellcome Trust/United Kingdom -- GM82901/GM/NIGMS NIH HHS/ -- R01 HG003474/HG/NHGRI NIH HHS/ -- R01 HG004037/HG/NHGRI NIH HHS/ -- U54 HG003067/HG/NHGRI NIH HHS/ -- U54 HG003067-09/HG/NHGRI NIH HHS/ -- U54 HG003273/HG/NHGRI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Broad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA. kersli@broadinstitute.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21993624" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Disease ; *Evolution, Molecular ; Exons/genetics ; Genome/*genetics ; Genome, Human/*genetics ; Genomics ; Health ; Humans ; Mammals/*genetics ; Molecular Sequence Annotation ; Phylogeny ; RNA/classification/genetics ; Selection, Genetic/genetics ; Sequence Alignment ; Sequence Analysis, DNA
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  • 38
    Publication Date: 2011-02-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Aziz, Tipu -- Stein, John -- Yogeshwar, Ranga -- England -- Nature. 2011 Feb 24;470(7335):457-9. doi: 10.1038/470457a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurosurgery, John Radcliffe Hospital, Oxford OX3 9DU, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21350463" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Experimentation/ethics/legislation & jurisprudence/standards ; Animal Rights/standards ; Animals ; Communication ; Emotions ; Facility Design and Construction ; Great Britain ; Housing, Animal ; Humans ; Parkinson Disease ; *Public Relations ; *Research Personnel ; Television/*utilization ; Terrorism/legislation & jurisprudence/prevention & control
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  • 39
    Publication Date: 2011-03-04
    Description: The mechanisms underlying the low efficiency of reprogramming somatic cells into induced pluripotent stem (iPS) cells are poorly understood. There is a clear need to study whether the reprogramming process itself compromises genomic integrity and, through this, the efficiency of iPS cell establishment. Using a high-resolution single nucleotide polymorphism array, we compared copy number variations (CNVs) of different passages of human iPS cells with their fibroblast cell origins and with human embryonic stem (ES) cells. Here we show that significantly more CNVs are present in early-passage human iPS cells than intermediate passage human iPS cells, fibroblasts or human ES cells. Most CNVs are formed de novo and generate genetic mosaicism in early-passage human iPS cells. Most of these novel CNVs rendered the affected cells at a selective disadvantage. Remarkably, expansion of human iPS cells in culture selects rapidly against mutated cells, driving the lines towards a genetic state resembling human ES cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hussein, Samer M -- Batada, Nizar N -- Vuoristo, Sanna -- Ching, Reagan W -- Autio, Reija -- Narva, Elisa -- Ng, Siemon -- Sourour, Michel -- Hamalainen, Riikka -- Olsson, Cia -- Lundin, Karolina -- Mikkola, Milla -- Trokovic, Ras -- Peitz, Michael -- Brustle, Oliver -- Bazett-Jones, David P -- Alitalo, Kari -- Lahesmaa, Riitta -- Nagy, Andras -- Otonkoski, Timo -- England -- Nature. 2011 Mar 3;471(7336):58-62. doi: 10.1038/nature09871.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Samuel Lunenfeld Research Institute, Toronto, Ontario M5T 3H7, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368824" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Cellular Reprogramming/*genetics ; Chromosome Fragile Sites/genetics ; DNA Copy Number Variations/*genetics ; Embryonic Stem Cells/cytology/metabolism ; Fibroblasts/cytology/metabolism ; Haplotypes/genetics ; Humans ; In Situ Hybridization, Fluorescence ; Induced Pluripotent Stem Cells/cytology/*metabolism/pathology ; Mosaicism ; Mutagenesis/genetics ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide/genetics ; *Selection, Genetic/genetics
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  • 40
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    Nature Publishing Group (NPG)
    Publication Date: 2011-06-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bartek, Jiri -- Lukas, Jiri -- England -- Nature. 2011 Jun 8;474(7350):171-2. doi: 10.1038/474171a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21654798" target="_blank"〉PubMed〈/a〉
    Keywords: Cyclin D1/deficiency/*metabolism ; DNA Damage/radiation effects ; DNA Repair/*physiology/radiation effects ; Humans ; Neoplasms/genetics/*metabolism/pathology ; Protein Binding/radiation effects ; Protein Interaction Mapping ; Rad51 Recombinase/metabolism ; Recombination, Genetic/genetics ; Retinoblastoma Protein/deficiency
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  • 41
    Publication Date: 2011-09-09
    Description: Mutations in the tumour suppressor gene BRCA1 lead to breast and/or ovarian cancer. Here we show that loss of Brca1 in mice results in transcriptional de-repression of the tandemly repeated satellite DNA. Brca1 deficiency is accompanied by a reduction of condensed DNA regions in the genome and loss of ubiquitylation of histone H2A at satellite repeats. BRCA1 binds to satellite DNA regions and ubiquitylates H2A in vivo. Ectopic expression of H2A fused to ubiquitin reverses the effects of BRCA1 loss, indicating that BRCA1 maintains heterochromatin structure via ubiquitylation of histone H2A. Satellite DNA de-repression was also observed in mouse and human BRCA1-deficient breast cancers. Ectopic expression of satellite DNA can phenocopy BRCA1 loss in centrosome amplification, cell-cycle checkpoint defects, DNA damage and genomic instability. We propose that the role of BRCA1 in maintaining global heterochromatin integrity accounts for many of its tumour suppressor functions.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240576/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240576/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhu, Quan -- Pao, Gerald M -- Huynh, Alexis M -- Suh, Hoonkyo -- Tonnu, Nina -- Nederlof, Petra M -- Gage, Fred H -- Verma, Inder M -- NS50217/NS/NINDS NIH HHS/ -- NS52842/NS/NINDS NIH HHS/ -- R01 NS050217/NS/NINDS NIH HHS/ -- R01 NS050217-05/NS/NINDS NIH HHS/ -- R01 NS052842/NS/NINDS NIH HHS/ -- R01 NS052842-04/NS/NINDS NIH HHS/ -- England -- Nature. 2011 Sep 7;477(7363):179-84. doi: 10.1038/nature10371.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21901007" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; BRCA1 Protein/deficiency/genetics/*metabolism ; Breast/cytology ; Breast Neoplasms/*genetics/pathology ; Cell Line, Tumor ; Cells, Cultured ; DNA, Satellite/genetics ; Epithelial Cells/metabolism ; Female ; Gene Expression Regulation, Neoplastic ; *Gene Silencing ; Genes, BRCA1/*physiology ; Genomic Instability/genetics ; HeLa Cells ; Heterochromatin/*genetics/*metabolism ; Histones/metabolism ; Humans ; Mice ; Ovarian Neoplasms/genetics ; RNA, Messenger/genetics ; Transcription, Genetic/genetics ; Ubiquitin-Protein Ligases/metabolism ; Ubiquitinated Proteins/metabolism ; Ubiquitination
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  • 42
    Publication Date: 2011-11-01
    Description: Retrotransposons are mobile genetic elements that use a germline 'copy-and-paste' mechanism to spread throughout metazoan genomes. At least 50 per cent of the human genome is derived from retrotransposons, with three active families (L1, Alu and SVA) associated with insertional mutagenesis and disease. Epigenetic and post-transcriptional suppression block retrotransposition in somatic cells, excluding early embryo development and some malignancies. Recent reports of L1 expression and copy number variation in the human brain suggest that L1 mobilization may also occur during later development. However, the corresponding integration sites have not been mapped. Here we apply a high-throughput method to identify numerous L1, Alu and SVA germline mutations, as well as 7,743 putative somatic L1 insertions, in the hippocampus and caudate nucleus of three individuals. Surprisingly, we also found 13,692 somatic Alu insertions and 1,350 SVA insertions. Our results demonstrate that retrotransposons mobilize to protein-coding genes differentially expressed and active in the brain. Thus, somatic genome mosaicism driven by retrotransposition may reshape the genetic circuitry that underpins normal and abnormal neurobiological processes.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224101/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224101/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baillie, J Kenneth -- Barnett, Mark W -- Upton, Kyle R -- Gerhardt, Daniel J -- Richmond, Todd A -- De Sapio, Fioravante -- Brennan, Paul M -- Rizzu, Patrizia -- Smith, Sarah -- Fell, Mark -- Talbot, Richard T -- Gustincich, Stefano -- Freeman, Thomas C -- Mattick, John S -- Hume, David A -- Heutink, Peter -- Carninci, Piero -- Jeddeloh, Jeffrey A -- Faulkner, Geoffrey J -- 090385/Wellcome Trust/United Kingdom -- 090385/Z/09/Z/Wellcome Trust/United Kingdom -- BB/H005935/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- England -- Nature. 2011 Oct 30;479(7374):534-7. doi: 10.1038/nature10531.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh EH25 9RG, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22037309" target="_blank"〉PubMed〈/a〉
    Keywords: Alu Elements/genetics ; Base Sequence/genetics ; Brain/*metabolism ; Caudate Nucleus/metabolism ; Clonal Evolution/genetics ; DNA Copy Number Variations/genetics ; Epistasis, Genetic ; Genome, Human/genetics ; Germ-Line Mutation/*genetics ; Hippocampus/metabolism ; Histone Deacetylase 1/genetics ; Humans ; Mosaicism ; Mutagenesis, Insertional/*genetics ; Nerve Tissue Proteins/genetics ; Organ Specificity/genetics ; Polymerase Chain Reaction ; Retroelements/*genetics ; Transcription Factors/genetics
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  • 43
    Publication Date: 2011-05-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tijssen, Robert J W -- Waltman, Ludo -- van Eck, Nees Jan -- England -- Nature. 2011 May 12;473(7346):154. doi: 10.1038/473154a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21562547" target="_blank"〉PubMed〈/a〉
    Keywords: Communication ; *Cooperative Behavior ; Humans ; International Cooperation ; Science/*statistics & numerical data/trends
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  • 44
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    Nature Publishing Group (NPG)
    Publication Date: 2011-05-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gewin, Virginia -- England -- Nature. 2011 May 19;473(7347):409-11.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21598458" target="_blank"〉PubMed〈/a〉
    Keywords: Accreditation ; DNA Fingerprinting ; Dermatoglyphics ; Employment/*statistics & numerical data ; Forensic Sciences/economics/education/*manpower/standards ; Humans ; Research Personnel/education/supply & distribution
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  • 45
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-24
    Description: 〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971995/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971995/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bass, Joseph -- R01 DK090625/DK/NIDDK NIH HHS/ -- R01 HL097817/HL/NHLBI NIH HHS/ -- England -- Nature. 2011 Dec 21;480(7378):466-7. doi: 10.1038/480466a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22193099" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Circadian Rhythm ; Cryptochromes/*metabolism ; Female ; *Gene Expression Regulation ; Humans ; Receptors, Glucocorticoid/*metabolism
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  • 46
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    Nature Publishing Group (NPG)
    Publication Date: 2011-09-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Galanis, Evanthia -- P50 CA108961/CA/NCI NIH HHS/ -- England -- Nature. 2011 Aug 31;477(7362):40-1. doi: 10.1038/477040a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21886153" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials, Phase I as Topic ; Humans ; Neoplasm Metastasis ; Neoplasms/*therapy/*virology ; *Oncolytic Virotherapy ; Oncolytic Viruses/genetics/*physiology
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  • 47
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    Nature Publishing Group (NPG)
    Publication Date: 2011-09-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zimmerman, Peter D -- England -- Nature. 2011 Sep 7;477(7363):153-4. doi: 10.1038/477153a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of War Studies, King's College London, Strand, London WC2R 2LS, UK. peter.zimmerman@cox.net〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21900991" target="_blank"〉PubMed〈/a〉
    Keywords: History, 21st Century ; Humans ; Security Measures/economics/*history/legislation & jurisprudence/*organization & ; administration ; *September 11 Terrorist Attacks ; Terrorism/history/prevention & control ; United States ; United States Department of Homeland Security/economics/history/legislation & ; jurisprudence/*organization & administration
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  • 48
    Publication Date: 2011-05-20
    Description: Aortic aneurysm is common, accounting for 1-2% of all deaths in industrialized countries. Early theories of the causes of human aneurysm mostly focused on inherited or acquired defects in components of the extracellular matrix in the aorta. Although several mutations in the genes encoding extracellular matrix proteins have been recognized, more recent discoveries have shown important perturbations in cytokine signalling cascades and intracellular components of the smooth muscle contractile apparatus. The modelling of single-gene heritable aneurysm disorders in mice has shown unexpected involvement of the transforming growth factor-beta cytokine pathway in aortic aneurysm, highlighting the potential for new therapeutic strategies.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622871/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3622871/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lindsay, Mark E -- Dietz, Harry C -- K08 HL107738/HL/NHLBI NIH HHS/ -- R01 AR041135/AR/NIAMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2011 May 19;473(7347):308-16. doi: 10.1038/nature10145.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Pediatric Cardiology, Department of Pediatrics, Johns Hopkins Medical Institutions, Baltimore, Maryland 21205-1832, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21593863" target="_blank"〉PubMed〈/a〉
    Keywords: Angiotensin II/metabolism ; Animals ; Aortic Aneurysm/complications/*genetics/*pathology/therapy ; Disease Models, Animal ; Elastin/metabolism ; Humans ; Muscle, Smooth, Vascular/pathology ; Transforming Growth Factor beta/metabolism
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  • 49
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    Nature Publishing Group (NPG)
    Publication Date: 2011-07-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zlotnik, Hania -- England -- Nature. 2011 Jun 29;474(7353):579. doi: 10.1038/474579c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21720353" target="_blank"〉PubMed〈/a〉
    Keywords: Birth Rate ; Fertility ; Humans ; *Population Growth ; *United Nations
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  • 50
    Publication Date: 2011-04-08
    Description: X-chromosome inactivation (XCI) in female mammals allows dosage compensation for X-linked gene products between the sexes. The developmental regulation of this process has been extensively investigated in mice, where the X chromosome of paternal origin (Xp) is silenced during early embryogenesis owing to imprinted expression of the regulatory RNA, Xist (X-inactive specific transcript). Paternal XCI is reversed in the inner cell mass of the blastocyst and random XCI subsequently occurs in epiblast cells. Here we show that other eutherian mammals have very different strategies for initiating XCI. In rabbits and humans, the Xist homologue is not subject to imprinting and XCI begins later than in mice. Furthermore, Xist is upregulated on both X chromosomes in a high proportion of rabbit and human embryo cells, even in the inner cell mass. In rabbits, this triggers XCI on both X chromosomes in some cells. In humans, chromosome-wide XCI has not initiated even by the blastocyst stage, despite the upregulation of XIST. The choice of which X chromosome will finally become inactive thus occurs downstream of Xist upregulation in both rabbits and humans, unlike in mice. Our study demonstrates the remarkable diversity in XCI regulation and highlights differences between mammals in their requirement for dosage compensation during early embryogenesis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Okamoto, Ikuhiro -- Patrat, Catherine -- Thepot, Dominique -- Peynot, Nathalie -- Fauque, Patricia -- Daniel, Nathalie -- Diabangouaya, Patricia -- Wolf, Jean-Philippe -- Renard, Jean-Paul -- Duranthon, Veronique -- Heard, Edith -- England -- Nature. 2011 Apr 21;472(7343):370-4. doi: 10.1038/nature09872. Epub 2011 Apr 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Mammalian Developmental Epigenetics Group, Institut Curie, CNRS UMR 3215, INSERM U934, Paris 75248, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21471966" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biological Evolution ; Blastocyst/metabolism ; Chromosomes, Mammalian/*genetics ; Dosage Compensation, Genetic/genetics ; Embryo, Mammalian/embryology/metabolism ; Female ; Gene Expression Regulation, Developmental/*genetics ; Genes, X-Linked/genetics ; Genomic Imprinting/genetics ; Histones/metabolism ; Humans ; Hypoxanthine Phosphoribosyltransferase/genetics ; Male ; Mammals/embryology/*genetics ; Mice ; Parthenogenesis ; RNA, Long Noncoding ; RNA, Untranslated/genetics ; Rabbits ; Species Specificity ; Up-Regulation/genetics ; X Chromosome/*genetics ; X Chromosome Inactivation/*genetics
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  • 51
    Publication Date: 2011-10-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hyun, Insoo -- Tesar, Paul -- England -- Nature. 2011 Oct 5;478(7367):36-7. doi: 10.1038/478036c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21979034" target="_blank"〉PubMed〈/a〉
    Keywords: *Cellular Reprogramming ; Female ; Humans ; Induced Pluripotent Stem Cells/*cytology/*metabolism ; Oocytes/*cytology/*physiology
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  • 52
    Publication Date: 2011-07-15
    Description: A hallmark of RNA silencing is a class of approximately 22-nucleotide RNAs that are processed from double-stranded RNA precursors by Dicer. Accurate processing by Dicer is crucial for the functionality of microRNAs (miRNAs). The current model posits that Dicer selects cleavage sites by measuring a set distance from the 3' overhang of the double-stranded RNA terminus. Here we report that human Dicer anchors not only the 3' end but also the 5' end, with the cleavage site determined mainly by the distance ( approximately 22 nucleotides) from the 5' end (5' counting rule). This cleavage requires a 5'-terminal phosphate group. Further, we identify a novel basic motif (5' pocket) in human Dicer that recognizes the 5'-phosphorylated end. The 5' counting rule and the 5' anchoring residues are conserved in Drosophila Dicer-1, but not in Giardia Dicer. Mutations in the 5' pocket reduce processing efficiency and alter cleavage sites in vitro. Consistently, miRNA biogenesis is perturbed in vivo when Dicer-null embryonic stem cells are replenished with the 5'-pocket mutant. Thus, 5'-end recognition by Dicer is important for precise and effective biogenesis of miRNAs. Insights from this study should also afford practical benefits to the design of small hairpin RNAs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4693635/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4693635/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, Jong-Eun -- Heo, Inha -- Tian, Yuan -- Simanshu, Dhirendra K -- Chang, Hyeshik -- Jee, David -- Patel, Dinshaw J -- Kim, V Narry -- P30 CA008748/CA/NCI NIH HHS/ -- R01 AI068776/AI/NIAID NIH HHS/ -- England -- Nature. 2011 Jul 13;475(7355):201-5. doi: 10.1038/nature10198.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Biological Sciences, Seoul National University, Seoul 151-742, Korea.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21753850" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Base Sequence ; Binding Sites/genetics ; DEAD-box RNA Helicases/deficiency/genetics/*metabolism ; Drosophila Proteins/metabolism ; Embryonic Stem Cells/metabolism ; Evolution, Molecular ; Giardia/enzymology ; HEK293 Cells ; Humans ; MicroRNAs/biosynthesis/chemistry/genetics/*metabolism ; Molecular Sequence Data ; Mutant Proteins/chemistry/genetics/metabolism ; Mutation/genetics ; Phosphates/metabolism ; Phosphorylation ; RNA Helicases/metabolism ; Ribonuclease III/deficiency/genetics/*metabolism ; Substrate Specificity/genetics
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  • 53
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    Nature Publishing Group (NPG)
    Publication Date: 2011-07-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schnabel, Jim -- England -- Nature. 2011 Jul 13;475(7355):S18-9. doi: 10.1038/475S18a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21760578" target="_blank"〉PubMed〈/a〉
    Keywords: Alzheimer Disease/immunology/metabolism/*prevention & control/*therapy ; Alzheimer Vaccines/adverse effects/*immunology/*therapeutic use ; Amyloid/antagonists & inhibitors/chemistry/immunology/metabolism ; Amyloid beta-Peptides/adverse effects/*antagonists & ; inhibitors/chemistry/immunology/metabolism/therapeutic use ; Animals ; Antibodies, Monoclonal/adverse effects/immunology/therapeutic use ; Antibodies, Monoclonal, Humanized ; Clinical Trials as Topic ; Humans ; Immunoglobulins, Intravenous/economics/*immunology/*therapeutic use ; Mice ; tau Proteins/antagonists & inhibitors/chemistry/metabolism
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  • 54
    Publication Date: 2011-10-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Flutre, Timothee -- Julou, Thomas -- Riboli-Sasco, Livio -- Ribrault, Claire -- England -- Nature. 2011 Oct 5;478(7367):37. doi: 10.1038/478037c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21979036" target="_blank"〉PubMed〈/a〉
    Keywords: *Cause of Death ; Humans ; *Retraction of Publication as Topic
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  • 55
    Publication Date: 2011-11-04
    Description: Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary period remain contentious. Here we use ancient DNA, species distribution models and the human fossil record to elucidate how climate and humans shaped the demographic history of woolly rhinoceros, woolly mammoth, wild horse, reindeer, bison and musk ox. We show that climate has been a major driver of population change over the past 50,000 years. However, each species responds differently to the effects of climatic shifts, habitat redistribution and human encroachment. Although climate change alone can explain the extinction of some species, such as Eurasian musk ox and woolly rhinoceros, a combination of climatic and anthropogenic effects appears to be responsible for the extinction of others, including Eurasian steppe bison and wild horse. We find no genetic signature or any distinctive range dynamics distinguishing extinct from surviving species, emphasizing the challenges associated with predicting future responses of extant mammals to climate and human-mediated habitat change.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070744/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070744/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lorenzen, Eline D -- Nogues-Bravo, David -- Orlando, Ludovic -- Weinstock, Jaco -- Binladen, Jonas -- Marske, Katharine A -- Ugan, Andrew -- Borregaard, Michael K -- Gilbert, M Thomas P -- Nielsen, Rasmus -- Ho, Simon Y W -- Goebel, Ted -- Graf, Kelly E -- Byers, David -- Stenderup, Jesper T -- Rasmussen, Morten -- Campos, Paula F -- Leonard, Jennifer A -- Koepfli, Klaus-Peter -- Froese, Duane -- Zazula, Grant -- Stafford, Thomas W Jr -- Aaris-Sorensen, Kim -- Batra, Persaram -- Haywood, Alan M -- Singarayer, Joy S -- Valdes, Paul J -- Boeskorov, Gennady -- Burns, James A -- Davydov, Sergey P -- Haile, James -- Jenkins, Dennis L -- Kosintsev, Pavel -- Kuznetsova, Tatyana -- Lai, Xulong -- Martin, Larry D -- McDonald, H Gregory -- Mol, Dick -- Meldgaard, Morten -- Munch, Kasper -- Stephan, Elisabeth -- Sablin, Mikhail -- Sommer, Robert S -- Sipko, Taras -- Scott, Eric -- Suchard, Marc A -- Tikhonov, Alexei -- Willerslev, Rane -- Wayne, Robert K -- Cooper, Alan -- Hofreiter, Michael -- Sher, Andrei -- Shapiro, Beth -- Rahbek, Carsten -- Willerslev, Eske -- R01 HG003229/HG/NHGRI NIH HHS/ -- England -- Nature. 2011 Nov 2;479(7373):359-64. doi: 10.1038/nature10574.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for GeoGenetics, University of Copenhagen, Oster Voldgade 5-7, DK-1350 Copenhagen K, Denmark.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22048313" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bayes Theorem ; *Biota ; Bison ; Climate Change/*history ; DNA, Mitochondrial/analysis/genetics ; Europe ; *Extinction, Biological ; Fossils ; Genetic Variation ; Geography ; History, Ancient ; Horses ; Human Activities/*history ; Humans ; Mammals/genetics/*physiology ; Mammoths ; Molecular Sequence Data ; Population Dynamics ; Reindeer ; Siberia ; Species Specificity ; Time Factors
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  • 56
    Publication Date: 2011-07-08
    Description: 〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3173804/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3173804/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Collins, Pamela Y -- Patel, Vikram -- Joestl, Sarah S -- March, Dana -- Insel, Thomas R -- Daar, Abdallah S -- Scientific Advisory Board and the Executive Committee of the Grand Challenges on Global Mental Health -- Anderson, Warwick -- Dhansay, Muhammad A -- Phillips, Anthony -- Shurin, Susan -- Walport, Mark -- Ewart, Wendy -- Savill, Sir John -- Bordin, Isabel A -- Costello, E Jane -- Durkin, Maureen -- Fairburn, Christopher -- Glass, Roger I -- Hall, Wayne -- Huang, Yueqin -- Hyman, Steven E -- Jamison, Kay -- Kaaya, Sylvia -- Kapur, Shitij -- Kleinman, Arthur -- Ogunniyi, Adesola -- Otero-Ojeda, Angel -- Poo, Mu-Ming -- Ravindranath, Vijayalakshmi -- Sahakian, Barbara J -- Saxena, Shekhar -- Singer, Peter A -- Stein, Dan J -- 079113/Wellcome Trust/United Kingdom -- 091834/Wellcome Trust/United Kingdom -- P30 HD003352/HD/NICHD NIH HHS/ -- Z99 MH999999/Intramural NIH HHS/ -- England -- Nature. 2011 Jul 6;475(7354):27-30. doi: 10.1038/475027a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Office for Research on Disparities and Global Mental Health, National Institute of Mental Health, Maryland, USA. pamela.collins@nih.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21734685" target="_blank"〉PubMed〈/a〉
    Keywords: *Global Health ; Humans ; Mental Disorders/economics/epidemiology/prevention & control ; Mental Health/*statistics & numerical data ; Substance-Related Disorders/economics/epidemiology ; World Health Organization
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  • 57
    Publication Date: 2011-02-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zucco, Carlos A -- Oliveira-Santos, Luiz Gustavo R -- Fernandez, Fernando A S -- England -- Nature. 2011 Feb 17;470(7334):335. doi: 10.1038/470335a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21331027" target="_blank"〉PubMed〈/a〉
    Keywords: Brazil ; Disasters/*prevention & control/statistics & numerical data ; Ecology/legislation & jurisprudence/methods ; Environmental Policy/*legislation & jurisprudence ; Floods/mortality ; Forestry/*legislation & jurisprudence/methods ; Humans ; Landslides/mortality ; Rain
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  • 58
    Publication Date: 2011-05-24
    Description: The differentiation of patient-derived induced pluripotent stem cells (iPSCs) to committed fates such as neurons, muscle and liver is a powerful approach for understanding key parameters of human development and disease. Whether undifferentiated iPSCs themselves can be used to probe disease mechanisms is uncertain. Dyskeratosis congenita is characterized by defective maintenance of blood, pulmonary tissue and epidermal tissues and is caused by mutations in genes controlling telomere homeostasis. Short telomeres, a hallmark of dyskeratosis congenita, impair tissue stem cell function in mouse models, indicating that a tissue stem cell defect may underlie the pathophysiology of dyskeratosis congenita. Here we show that even in the undifferentiated state, iPSCs from dyskeratosis congenita patients harbour the precise biochemical defects characteristic of each form of the disease and that the magnitude of the telomere maintenance defect in iPSCs correlates with clinical severity. In iPSCs from patients with heterozygous mutations in TERT, the telomerase reverse transcriptase, a 50% reduction in telomerase levels blunts the natural telomere elongation that accompanies reprogramming. In contrast, mutation of dyskerin (DKC1) in X-linked dyskeratosis congenita severely impairs telomerase activity by blocking telomerase assembly and disrupts telomere elongation during reprogramming. In iPSCs from a form of dyskeratosis congenita caused by mutations in TCAB1 (also known as WRAP53), telomerase catalytic activity is unperturbed, yet the ability of telomerase to lengthen telomeres is abrogated, because telomerase mislocalizes from Cajal bodies to nucleoli within the iPSCs. Extended culture of DKC1-mutant iPSCs leads to progressive telomere shortening and eventual loss of self-renewal, indicating that a similar process occurs in tissue stem cells in dyskeratosis congenita patients. These findings in iPSCs from dyskeratosis congenita patients reveal that undifferentiated iPSCs accurately recapitulate features of a human stem cell disease and may serve as a cell-culture-based system for the development of targeted therapeutics.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155806/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155806/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Batista, Luis F Z -- Pech, Matthew F -- Zhong, Franklin L -- Nguyen, Ha Nam -- Xie, Kathleen T -- Zaug, Arthur J -- Crary, Sharon M -- Choi, Jinkuk -- Sebastiano, Vittorio -- Cherry, Athena -- Giri, Neelam -- Wernig, Marius -- Alter, Blanche P -- Cech, Thomas R -- Savage, Sharon A -- Reijo Pera, Renee A -- Artandi, Steven E -- R01 AG033747/AG/NIA NIH HHS/ -- R01 AG033747-02/AG/NIA NIH HHS/ -- R01 CA111691/CA/NCI NIH HHS/ -- R01 CA111691-05/CA/NCI NIH HHS/ -- R01 CA125453/CA/NCI NIH HHS/ -- R01 CA125453-05/CA/NCI NIH HHS/ -- RC1 HL100361/HL/NHLBI NIH HHS/ -- RC1 HL100361-01/HL/NHLBI NIH HHS/ -- T32 CA009302/CA/NCI NIH HHS/ -- U01 HL100397/HL/NHLBI NIH HHS/ -- Howard Hughes Medical Institute/ -- Intramural NIH HHS/ -- England -- Nature. 2011 May 22;474(7351):399-402. doi: 10.1038/nature10084.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Stanford University School of Medicine, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21602826" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Cycle Proteins/genetics/metabolism ; Cell Division ; Cellular Reprogramming ; Dyskeratosis Congenita/*genetics/*pathology ; Fibroblasts ; Gene Expression Regulation ; Humans ; Induced Pluripotent Stem Cells/*metabolism/*pathology ; Nuclear Proteins/genetics/metabolism ; RNA/genetics ; Telomerase/genetics/metabolism ; Telomere/enzymology/genetics/metabolism/*pathology
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  • 59
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    Nature Publishing Group (NPG)
    Publication Date: 2011-03-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Macdonald, Sally -- Ashby, Jack -- England -- Nature. 2011 Mar 10;471(7337):164-5. doi: 10.1038/471164a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21390112" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Endangered Species ; Humans ; London ; *Museums ; Natural History/education ; *Universities/economics/organization & administration ; Zoology/education
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  • 60
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    Nature Publishing Group (NPG)
    Publication Date: 2011-03-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jonietz, Erika -- England -- Nature. 2011 Mar 24;471(7339):S20-1. doi: 10.1038/471S20a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21430717" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Azasteroids/pharmacology ; Biomarkers, Tumor/analysis/blood ; Clinical Trials as Topic/adverse effects/*methods ; Disease Models, Animal ; Drug Approval/legislation & jurisprudence ; Dutasteride ; Health ; Humans ; Male ; Neoplasms/blood/diagnosis/*prevention & control ; Prostatic Neoplasms/prevention & control ; Reproducibility of Results ; Risk Assessment ; United States ; United States Food and Drug Administration/legislation & jurisprudence
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  • 61
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    Nature Publishing Group (NPG)
    Publication Date: 2011-03-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chi, Kelly Rae -- England -- Nature. 2011 Mar 24;471(7339):537-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21438188" target="_blank"〉PubMed〈/a〉
    Keywords: Allergy and Immunology/education/manpower ; Biomedical Research/education/*manpower/*trends ; Cancer Vaccines/biosynthesis/*immunology/*therapeutic use ; Clinical Trials as Topic/methods/trends ; Disease Progression ; Fellowships and Scholarships ; Humans ; Medical Oncology/education/manpower ; Neoplasms/immunology/*prevention & control/*therapy ; Precision Medicine/methods ; Research Personnel/education/psychology ; Tissue Extracts/immunology/therapeutic use ; Treatment Outcome
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  • 62
    Publication Date: 2011-07-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zukor, Katherine -- He, Zhigang -- England -- Nature. 2011 Jul 13;475(7355):177-8. doi: 10.1038/475178a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Kirby Program in Neuroscience, Children's Hospital Boston, Boston, Massachusetts 02115, USA. katherine.zukor@childrens.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21753842" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Axons/physiology ; Chondroitin ABC Lyase/metabolism ; Chondroitin Sulfate Proteoglycans/metabolism ; Diaphragm/innervation/physiology ; Electromyography ; Extracellular Matrix/metabolism ; Humans ; Nerve Regeneration/*physiology ; Neuronal Plasticity/physiology ; Phrenic Nerve/cytology/physiology/transplantation ; Rats ; *Respiration ; Spinal Cord Injuries/*physiopathology
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  • 63
    Publication Date: 2011-03-04
    Description: The effective use of targeted therapy is highly dependent on the identification of responder patient populations. Loss of FBW7, which encodes a tumour-suppressor protein, is frequently found in various types of human cancer, including breast cancer, colon cancer and T-cell acute lymphoblastic leukaemia (T-ALL). In line with these genomic data, engineered deletion of Fbw7 in mouse T cells results in T-ALL, validating FBW7 as a T-ALL tumour suppressor. Determining the precise molecular mechanisms by which FBW7 exerts antitumour activity is an area of intensive investigation. These mechanisms are thought to relate in part to FBW7-mediated destruction of key proteins relevant to cancer, including Jun, Myc, cyclin E and notch 1 (ref. 9), all of which have oncoprotein activity and are overexpressed in various human cancers, including leukaemia. In addition to accelerating cell growth, overexpression of Jun, Myc or notch 1 can also induce programmed cell death. Thus, considerable uncertainty surrounds how FBW7-deficient cells evade cell death in the setting of upregulated Jun, Myc and/or notch 1. Here we show that the E3 ubiquitin ligase SCF(FBW7) (a SKP1-cullin-1-F-box complex that contains FBW7 as the F-box protein) governs cellular apoptosis by targeting MCL1, a pro-survival BCL2 family member, for ubiquitylation and destruction in a manner that depends on phosphorylation by glycogen synthase kinase 3. Human T-ALL cell lines showed a close relationship between FBW7 loss and MCL1 overexpression. Correspondingly, T-ALL cell lines with defective FBW7 are particularly sensitive to the multi-kinase inhibitor sorafenib but resistant to the BCL2 antagonist ABT-737. On the genetic level, FBW7 reconstitution or MCL1 depletion restores sensitivity to ABT-737, establishing MCL1 as a therapeutically relevant bypass survival mechanism that enables FBW7-deficient cells to evade apoptosis. Therefore, our work provides insight into the molecular mechanism of direct tumour suppression by FBW7 and has implications for the targeted treatment of patients with FBW7-deficient T-ALL.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3076007/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3076007/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Inuzuka, Hiroyuki -- Shaik, Shavali -- Onoyama, Ichiro -- Gao, Daming -- Tseng, Alan -- Maser, Richard S -- Zhai, Bo -- Wan, Lixin -- Gutierrez, Alejandro -- Lau, Alan W -- Xiao, Yonghong -- Christie, Amanda L -- Aster, Jon -- Settleman, Jeffrey -- Gygi, Steven P -- Kung, Andrew L -- Look, Thomas -- Nakayama, Keiichi I -- DePinho, Ronald A -- Wei, Wenyi -- GM089763/GM/NIGMS NIH HHS/ -- R01 GM089763/GM/NIGMS NIH HHS/ -- R01 GM089763-01/GM/NIGMS NIH HHS/ -- R01 GM089763-02/GM/NIGMS NIH HHS/ -- England -- Nature. 2011 Mar 3;471(7336):104-9. doi: 10.1038/nature09732.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, 330 Brookline Avenue, Boston, Massachusetts 02215, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368833" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; *Apoptosis/drug effects ; Benzenesulfonates/pharmacology ; Biphenyl Compounds/pharmacology ; Cell Cycle Proteins/genetics/*metabolism ; Cell Line, Tumor ; F-Box Proteins/genetics/*metabolism ; Glycogen Synthase Kinase 3/metabolism ; Humans ; Mice ; Molecular Sequence Data ; Myeloid Cell Leukemia Sequence 1 Protein ; Niacinamide/analogs & derivatives ; Nitrophenols/pharmacology ; Phenylurea Compounds ; Phosphorylation ; Piperazines/pharmacology ; Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/pathology ; Protein Binding/drug effects ; Proto-Oncogene Proteins c-bcl-2/antagonists & inhibitors/*chemistry/*metabolism ; Pyridines/pharmacology ; SKP Cullin F-Box Protein Ligases/*chemistry/*metabolism ; Sulfonamides/pharmacology ; Tumor Suppressor Proteins/deficiency/genetics/metabolism ; Ubiquitin-Protein Ligases/deficiency/genetics/*metabolism ; *Ubiquitination/drug effects
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  • 64
    Publication Date: 2011-07-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉MacGillivray, Brian H -- Pidgeon, Nick F -- England -- Nature. 2011 Jul 27;475(7357):455. doi: 10.1038/475455c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21796196" target="_blank"〉PubMed〈/a〉
    Keywords: *Decision Making ; Ethical Theory ; Humans ; *Social Values
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  • 65
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    Nature Publishing Group (NPG)
    Publication Date: 2011-10-01
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seaford, Charles -- England -- Nature. 2011 Sep 28;477(7366):532-3. doi: 10.1038/477532a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Well-being, New Economics Foundation, 3 Jonathan Street, London SE11 5NH. Charles.Seaford@neweconomics.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21956313" target="_blank"〉PubMed〈/a〉
    Keywords: Cost-Benefit Analysis ; Data Collection ; Economic Development/legislation & jurisprudence ; Employment/psychology/statistics & numerical data ; Gross Domestic Product/legislation & jurisprudence ; *Happiness ; Humans ; Internationality ; *Policy Making ; Politics ; Public Policy/*legislation & jurisprudence ; Quality of Life/*legislation & jurisprudence/psychology
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  • 66
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    Nature Publishing Group (NPG)
    Publication Date: 2011-11-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Juma, Calestous -- England -- Nature. 2011 Nov 23;479(7374):471-2. doi: 10.1038/479471a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Agricultural Innovation in Africa Project at Harvard Kennedy School, Cambridge, Massachusetts 02138, USA. calestous_juma@harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22113675" target="_blank"〉PubMed〈/a〉
    Keywords: Africa/epidemiology ; Agriculture/economics/*methods/trends ; Biotechnology/*methods/trends ; Child, Preschool ; Crops, Agricultural/economics/genetics ; Disease Resistance/genetics ; Food Supply/economics/*methods/statistics & numerical data ; Food, Genetically Modified/*utilization ; Humans ; *Hunger ; Starvation/epidemiology/*prevention & control
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  • 67
    Publication Date: 2011-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cressey, Daniel -- England -- Nature. 2011 Mar 3;471(7336):17-8. doi: 10.1038/471017a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368796" target="_blank"〉PubMed〈/a〉
    Keywords: Antimalarials/isolation & purification ; Drug Discovery/economics/manpower/*methods/*trends ; Drug Industry/economics/methods/trends ; Humans ; Information Dissemination ; Neglected Diseases/economics ; Outsourced Services/*trends ; Public-Private Sector Partnerships/*trends ; Research Personnel/economics
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  • 68
    Publication Date: 2011-04-09
    Description: M1 protein, a major virulence factor of the leading invasive strain of group A Streptococcus, is sufficient to induce toxic-shock-like vascular leakage and tissue injury. These events are triggered by the formation of a complex between M1 and fibrinogen that, unlike M1 or fibrinogen alone, leads to neutrophil activation. Here we provide a structural explanation for the pathological properties of the complex formed between streptococcal M1 and human fibrinogen. A conformationally dynamic coiled-coil dimer of M1 was found to organize four fibrinogen molecules into a specific cross-like pattern. This pattern supported the construction of a supramolecular network that was required for neutrophil activation but was distinct from a fibrin clot. Disruption of this network into other supramolecular assemblies was not tolerated. These results have bearing on the pathophysiology of streptococcal toxic shock.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268815/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268815/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Macheboeuf, Pauline -- Buffalo, Cosmo -- Fu, Chi-yu -- Zinkernagel, Annelies S -- Cole, Jason N -- Johnson, John E -- Nizet, Victor -- Ghosh, Partho -- R01 AI052453/AI/NIAID NIH HHS/ -- R01 AI052453-10/AI/NIAID NIH HHS/ -- R01 AI077780/AI/NIAID NIH HHS/ -- R01 AI077780-03/AI/NIAID NIH HHS/ -- R01 GM54076/GM/NIGMS NIH HHS/ -- R21 AI071167/AI/NIAID NIH HHS/ -- T32 GM007240/GM/NIGMS NIH HHS/ -- England -- Nature. 2011 Apr 7;472(7341):64-8. doi: 10.1038/nature09967.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21475196" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Bacterial Proteins/chemistry/*metabolism/ultrastructure ; Binding Sites ; Crystallography, X-Ray ; Fibrinogen/*chemistry/metabolism/ultrastructure ; Humans ; Models, Molecular ; Neutrophil Activation ; Protein Binding ; Protein Conformation ; Shock, Septic/microbiology/physiopathology ; Streptococcus pyogenes/chemistry/*pathogenicity ; Virulence ; Virulence Factors/chemistry/*metabolism
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  • 69
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Junge, Christine -- England -- Nature. 2011 Dec 7;480(7376):S14-5. doi: 10.1038/480S14a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22158295" target="_blank"〉PubMed〈/a〉
    Keywords: Gene Expression Regulation ; Humans ; Influenza A Virus, H1N1 Subtype/genetics/immunology/pathogenicity ; Influenza A virus/genetics/immunology/*pathogenicity ; Influenza, Human/complications/*genetics/mortality/*virology ; Morbidity
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  • 70
    Publication Date: 2011-04-12
    Description: The type I interferon response protects cells against invading viral pathogens. The cellular factors that mediate this defence are the products of interferon-stimulated genes (ISGs). Although hundreds of ISGs have been identified since their discovery more than 25 years ago, only a few have been characterized with respect to antiviral activity. For most ISG products, little is known about their antiviral potential, their target specificity and their mechanisms of action. Using an overexpression screening approach, here we show that different viruses are targeted by unique sets of ISGs. We find that each viral species is susceptible to multiple antiviral genes, which together encompass a range of inhibitory activities. To conduct the screen, more than 380 human ISGs were tested for their ability to inhibit the replication of several important human and animal viruses, including hepatitis C virus, yellow fever virus, West Nile virus, chikungunya virus, Venezuelan equine encephalitis virus and human immunodeficiency virus type-1. Broadly acting effectors included IRF1, C6orf150 (also known as MB21D1), HPSE, RIG-I (also known as DDX58), MDA5 (also known as IFIH1) and IFITM3, whereas more targeted antiviral specificity was observed with DDX60, IFI44L, IFI6, IFITM2, MAP3K14, MOV10, NAMPT (also known as PBEF1), OASL, RTP4, TREX1 and UNC84B (also known as SUN2). Combined expression of pairs of ISGs showed additive antiviral effects similar to those of moderate type I interferon doses. Mechanistic studies uncovered a common theme of translational inhibition for numerous effectors. Several ISGs, including ADAR, FAM46C, LY6E and MCOLN2, enhanced the replication of certain viruses, highlighting another layer of complexity in the highly pleiotropic type I interferon system.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409588/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409588/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schoggins, John W -- Wilson, Sam J -- Panis, Maryline -- Murphy, Mary Y -- Jones, Christopher T -- Bieniasz, Paul -- Rice, Charles M -- AI057158/AI/NIAID NIH HHS/ -- AI064003/AI/NIAID NIH HHS/ -- DK081193/DK/NIDDK NIH HHS/ -- DK082155/DK/NIDDK NIH HHS/ -- F32 DK081193-01A1/DK/NIDDK NIH HHS/ -- F32 DK082155/DK/NIDDK NIH HHS/ -- F32 DK082155-01/DK/NIDDK NIH HHS/ -- R01 AI064003/AI/NIAID NIH HHS/ -- R01 AI064003-01/AI/NIAID NIH HHS/ -- U54 AI057158/AI/NIAID NIH HHS/ -- U54 AI057158-01/AI/NIAID NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2011 Apr 28;472(7344):481-5. doi: 10.1038/nature09907. Epub 2011 Apr 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Virology and Infectious Disease, Center for the Study of Hepatitis C, The Rockefeller University, New York, New York 10065, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21478870" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; Gene Expression Profiling ; Gene Expression Regulation/*genetics/*immunology ; HEK293 Cells ; Humans ; Interferon Type I/*immunology ; Protein Biosynthesis ; Virus Replication ; Viruses/growth & development/*immunology
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  • 71
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2011 Dec 14;480(7377):291-2. doi: 10.1038/480291b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22170640" target="_blank"〉PubMed〈/a〉
    Keywords: Embryo Research/ethics/*legislation & jurisprudence ; *Embryo, Mammalian/cytology ; Europe ; Humans ; Patents as Topic/legislation & jurisprudence ; Regenerative Medicine/ethics/legislation & jurisprudence ; Stem Cells/cytology ; *Terminology as Topic
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  • 72
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    Nature Publishing Group (NPG)
    Publication Date: 2011-02-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cressey, Daniel -- England -- Nature. 2011 Feb 10;470(7333):154. doi: 10.1038/470154a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21307908" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/*economics/manpower/*organization & administration ; Drug Industry/economics/*manpower/*organization & administration ; Drugs, Generic/economics ; Employment/economics/statistics & numerical data ; Humans ; Marketing ; Patents as Topic
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  • 73
    Publication Date: 2011-08-13
    Description: This year, 2011, marks the forty-year anniversary of the statistical analysis of retinoblastoma that provided the first evidence that tumorigenesis can be initiated by as few as two mutations. This work provided the foundation for the two-hit hypothesis that explained the role of recessive tumour suppressor genes (TSGs) in dominantly inherited cancer susceptibility syndromes. However, four decades later, it is now known that even partial inactivation of tumour suppressors can critically contribute to tumorigenesis. Here we analyse this evidence and propose a continuum model of TSG function to explain the full range of TSG mutations found in cancer.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206311/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206311/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Berger, Alice H -- Knudson, Alfred G -- Pandolfi, Pier Paolo -- CA06927/CA/NCI NIH HHS/ -- R01 CA142787/CA/NCI NIH HHS/ -- R01CA142787/CA/NCI NIH HHS/ -- U01 CA141496/CA/NCI NIH HHS/ -- England -- Nature. 2011 Aug 10;476(7359):163-9. doi: 10.1038/nature10275.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cancer Genetics Program, Beth Israel Deaconess Cancer Center, Harvard Medical School, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21833082" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Transformation, Neoplastic/genetics/metabolism/pathology ; Genes, Tumor Suppressor/*physiology ; Genetic Predisposition to Disease/genetics ; Haploinsufficiency/genetics ; Humans ; *Models, Genetic ; Neoplasms/*genetics/metabolism/*pathology/therapy
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  • 74
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    Nature Publishing Group (NPG)
    Publication Date: 2011-04-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peplow, Mark -- England -- Nature. 2011 Mar 31;471(7340):562-5. doi: 10.1038/471562a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21455151" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/economics/trends ; *Chernobyl Nuclear Accident ; Child ; Disasters/economics/prevention & control ; Facility Design and Construction/economics/trends ; Floods ; Humans ; Japan ; Neoplasms, Radiation-Induced/epidemiology ; *Nuclear Power Plants/economics/instrumentation ; Radiation Injuries/epidemiology/etiology/mortality/psychology ; Radiation Monitoring/economics/*statistics & numerical data ; Thyroid Neoplasms/epidemiology/etiology ; Time Factors ; USSR/epidemiology
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  • 75
    Publication Date: 2011-08-09
    Description: Cytokinesis, the physical separation of daughter cells at the end of mitosis, requires precise regulation of the mechanical properties of the cell periphery. Although studies of cytokinetic mechanics mostly focus on the equatorial constriction ring, a contractile actomyosin cortex is also present at the poles of dividing cells. Whether polar forces influence cytokinetic cell shape and furrow positioning remains an open question. Here we demonstrate that the polar cortex makes cytokinesis inherently unstable. We show that limited asymmetric polar contractions occur during cytokinesis, and that perturbing the polar cortex leads to cell shape oscillations, resulting in furrow displacement and aneuploidy. A theoretical model based on a competition between cortex turnover and contraction dynamics accurately accounts for the oscillations. We further propose that membrane blebs, which commonly form at the poles of dividing cells and whose role in cytokinesis has long been enigmatic, stabilize cell shape by acting as valves releasing cortical contractility. Our findings reveal an inherent instability in the shape of the dividing cell and unveil a novel, spindle-independent mechanism ensuring the stability of cleavage furrow positioning.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sedzinski, Jakub -- Biro, Mate -- Oswald, Annelie -- Tinevez, Jean-Yves -- Salbreux, Guillaume -- Paluch, Ewa -- England -- Nature. 2011 Aug 7;476(7361):462-6. doi: 10.1038/nature10286.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21822289" target="_blank"〉PubMed〈/a〉
    Keywords: Actomyosin/*metabolism ; Amides/pharmacology ; Aneuploidy ; Cell Line ; Cell Shape/drug effects/*physiology ; Cell Size/drug effects ; Cytokinesis/drug effects/*physiology ; HeLa Cells ; Humans ; Models, Biological ; Pyridines/pharmacology
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  • 76
    Publication Date: 2011-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pera, Martin F -- England -- Nature. 2011 Mar 3;471(7336):46-7. doi: 10.1038/471046a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368819" target="_blank"〉PubMed〈/a〉
    Keywords: Aneuploidy ; Cellular Reprogramming/*genetics ; DNA Copy Number Variations/*genetics ; DNA Methylation/*genetics ; Embryonic Stem Cells/cytology/metabolism/pathology ; Epistasis, Genetic/*genetics ; Humans ; Induced Pluripotent Stem Cells/cytology/*metabolism/*pathology ; Models, Genetic ; Mutagenesis/*genetics ; Point Mutation/*genetics
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  • 77
    Publication Date: 2011-05-27
    Description: Swine influenza A viruses (SwIV) cause significant economic losses in animal husbandry as well as instances of human disease and occasionally give rise to human pandemics, including that caused by the H1N1/2009 virus. The lack of systematic and longitudinal influenza surveillance in pigs has hampered attempts to reconstruct the origins of this pandemic. Most existing swine data were derived from opportunistic samples collected from diseased pigs in disparate geographical regions, not from prospective studies in defined locations, hence the evolutionary and transmission dynamics of SwIV are poorly understood. Here we quantify the epidemiological, genetic and antigenic dynamics of SwIV in Hong Kong using a data set of more than 650 SwIV isolates and more than 800 swine sera from 12 years of systematic surveillance in this region, supplemented with data stretching back 34 years. Intercontinental virus movement has led to reassortment and lineage replacement, creating an antigenically and genetically diverse virus population whose dynamics are quantitatively different from those previously observed for human influenza viruses. Our findings indicate that increased antigenic drift is associated with reassortment events and offer insights into the emergence of influenza viruses with epidemic potential in swine and humans.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vijaykrishna, Dhanasekaran -- Smith, Gavin J D -- Pybus, Oliver G -- Zhu, Huachen -- Bhatt, Samir -- Poon, Leo L M -- Riley, Steven -- Bahl, Justin -- Ma, Siu K -- Cheung, Chung L -- Perera, Ranawaka A P M -- Chen, Honglin -- Shortridge, Kennedy F -- Webby, Richard J -- Webster, Robert G -- Guan, Yi -- Peiris, J S Malik -- HHSN26600700005C/PHS HHS/ -- MC_G0902096/Medical Research Council/United Kingdom -- England -- Nature. 2011 May 26;473(7348):519-22. doi: 10.1038/nature10004.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉State Key Laboratory of Emerging Infectious Diseases & Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, 21 Sassoon Road, Pokfulam, Hong Kong, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21614079" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Birds/virology ; *Evolution, Molecular ; Female ; Hong Kong/epidemiology ; Humans ; Influenza A Virus, H1N1 Subtype/classification/genetics/isolation & ; purification/*physiology ; Influenza in Birds/transmission/virology ; Influenza, Human/epidemiology/transmission/virology ; Male ; Molecular Epidemiology ; Molecular Sequence Data ; Orthomyxoviridae Infections/epidemiology/transmission/*veterinary/virology ; Phylogeny ; Population Surveillance ; Reassortant Viruses/genetics/immunology/isolation & purification/physiology ; Swine/blood/*virology ; Swine Diseases/blood/epidemiology/*transmission/*virology ; Zoonoses/epidemiology/transmission/*virology
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  • 78
    Publication Date: 2011-07-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Perera, Rushika M -- Bardeesy, Nabeel -- England -- Nature. 2011 Jul 6;475(7354):43-4. doi: 10.1038/475043a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Massachusetts General Hospital, Cancer Center, and Department of Medicine, Harvard Medical School, Boston, Massachusetts 02114, USA. rperera@partners.org〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21734699" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptor Proteins, Signal Transducing/genetics/metabolism ; Animals ; Antioxidants/metabolism ; Cell Transformation, Neoplastic/genetics/*metabolism/*pathology ; Cytoskeletal Proteins/genetics/metabolism ; Extracellular Signal-Regulated MAP Kinases/metabolism ; Humans ; Intracellular Signaling Peptides and Proteins/genetics/metabolism ; JNK Mitogen-Activated Protein Kinases/metabolism ; MAP Kinase Signaling System ; Mice ; Mitogen-Activated Protein Kinase Kinases/metabolism ; NF-E2-Related Factor 2/genetics/*metabolism ; Neoplasms/genetics/metabolism/pathology ; Oncogenes/*genetics ; Reactive Oxygen Species/*metabolism
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  • 79
    Publication Date: 2011-04-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seed, Amanda M -- Jensen, Keith -- England -- Nature. 2011 Apr 28;472(7344):424-5. doi: 10.1038/472424a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21525921" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Cognition/physiology ; *Cooperative Behavior ; Elephants/anatomy & histology/*physiology ; Humans ; Learning/physiology ; Pan troglodytes/physiology
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  • 80
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gilbert, Natasha -- England -- Nature. 2011 Dec 21;480(7378):S98-9. doi: 10.1038/480S98a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22190094" target="_blank"〉PubMed〈/a〉
    Keywords: *Drug and Narcotic Control ; Europe ; Herbal Medicine/*legislation & jurisprudence ; Humans ; United States
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  • 81
    Publication Date: 2011-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Conradt, Larissa -- England -- Nature. 2011 Mar 3;471(7336):40-1. doi: 10.1038/471040a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368814" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Choice Behavior ; Decision Making/*physiology ; Fishes/*physiology ; *Group Processes ; Humans ; Locomotion/*physiology ; Mass Behavior ; Predatory Behavior
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  • 82
    Publication Date: 2011-10-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Noorden, Richard -- England -- Nature. 2011 Oct 5;478(7367):26-8. doi: 10.1038/478026a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21979026" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Editorial Policies ; Guidelines as Topic ; Humans ; Periodicals as Topic/*standards ; Research Design/statistics & numerical data ; *Retraction of Publication as Topic ; *Science/ethics/standards ; Scientific Misconduct/statistics & numerical data
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  • 83
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    Nature Publishing Group (NPG)
    Publication Date: 2011-04-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cooper, Matthew A -- Shlaes, David -- England -- Nature. 2011 Apr 7;472(7341):32. doi: 10.1038/472032a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Molecular Bioscience, University of Queensland, Brisbane St Lucia, QLD 4072, Australia. m.cooper@imb.uq.edu.au〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21475175" target="_blank"〉PubMed〈/a〉
    Keywords: *Anti-Bacterial Agents/biosynthesis/economics ; Clinical Trials, Phase III as Topic/economics ; Drug Design ; Drug Discovery/economics/legislation & jurisprudence/*methods/*trends ; Drug Industry/economics/legislation & jurisprudence/*trends ; *Drug Resistance, Bacterial ; Federal Government ; Humans ; International Cooperation ; Leadership ; Models, Economic ; United States ; United States Food and Drug Administration/legislation & jurisprudence
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  • 84
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    Nature Publishing Group (NPG)
    Publication Date: 2011-12-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Berglund, Jennifer -- England -- Nature. 2011 Dec 14;480(7377):S56-7. doi: 10.1038/480S56a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22169807" target="_blank"〉PubMed〈/a〉
    Keywords: Bone Density Conservation Agents/pharmacology/*therapeutic use ; Bone Diseases/complications/drug therapy/pathology ; Bone Neoplasms/drug therapy/pathology/secondary ; Boronic Acids/pharmacology/therapeutic use ; Bortezomib ; Diphosphonates/pharmacology/therapeutic use ; Etidronic Acid/pharmacology/therapeutic use ; Humans ; Intercellular Signaling Peptides and Proteins/metabolism ; Kyphoplasty ; Multiple Myeloma/complications/*drug therapy/pathology/*physiopathology ; Osteoblasts/drug effects/pathology/physiology ; Osteoclasts/drug effects/pathology/physiology ; Osteogenesis/drug effects ; Proteasome Inhibitors ; Pyrazines/pharmacology/therapeutic use
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  • 85
    Publication Date: 2011-05-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bers, Donald M -- Harris, Samantha P -- R01 HL080367/HL/NHLBI NIH HHS/ -- England -- Nature. 2011 May 5;473(7345):36-9. doi: 10.1038/473036a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, University of California, Davis, Davis, California 95616, USA. dmbers@ucdavis.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21544138" target="_blank"〉PubMed〈/a〉
    Keywords: Cardiotonic Agents/adverse effects/pharmacology/*therapeutic use ; Heart/drug effects ; Heart Failure/*drug therapy ; Humans ; Translational Medical Research ; Urea/adverse effects/*analogs & derivatives/pharmacology/therapeutic use
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  • 86
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    Nature Publishing Group (NPG)
    Publication Date: 2011-01-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Noorden, Richard -- Ledford, Heidi -- Mann, Adam -- England -- Nature. 2011 Jan 6;469(7328):12. doi: 10.1038/469012a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21209635" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Climate ; Drug Evaluation, Preclinical/trends ; Genome-Wide Association Study ; Genomics/economics/trends ; Hepatitis C/drug therapy ; History, Ancient ; Humans ; Induced Pluripotent Stem Cells ; Lasers ; Oceanography/trends ; Oligopeptides/therapeutic use ; Physics/trends ; Planets ; Science/*trends ; Space Flight/trends ; Spacecraft ; Synthetic Biology/trends
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  • 87
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    Nature Publishing Group (NPG)
    Publication Date: 2011-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Corbyn, Zoe -- England -- Nature. 2011 Mar 3;471(7336):25-6. doi: 10.1038/471025a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368800" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; Humans ; Indians, North American/*education/*statistics & numerical data ; Mercury/analysis ; Research/*manpower/statistics & numerical data ; Students/statistics & numerical data ; Trout ; Universities/manpower/organization & administration/statistics & numerical data
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  • 88
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    Nature Publishing Group (NPG)
    Publication Date: 2011-07-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jones, David Albert -- England -- Nature. 2011 Jun 29;474(7353):579. doi: 10.1038/474579d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21720352" target="_blank"〉PubMed〈/a〉
    Keywords: *Embryonic Stem Cells ; Humans ; *Patents as Topic/ethics
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  • 89
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    Nature Publishing Group (NPG)
    Publication Date: 2011-11-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2011 Nov 23;479(7374):445-6. doi: 10.1038/479445b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22113652" target="_blank"〉PubMed〈/a〉
    Keywords: Archaeology/*trends ; Humans
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  • 90
    Publication Date: 2011-10-21
    Description: So far, no common environmental and/or phenotypic factor has been associated with melanoma and renal cell carcinoma (RCC). The known risk factors for melanoma include sun exposure, pigmentation and nevus phenotypes; risk factors associated with RCC include smoking, obesity and hypertension. A recent study of coexisting melanoma and RCC in the same patients supports a genetic predisposition underlying the association between these two cancers. The microphthalmia-associated transcription factor (MITF) has been proposed to act as a melanoma oncogene; it also stimulates the transcription of hypoxia inducible factor (HIF1A), the pathway of which is targeted by kidney cancer susceptibility genes. We therefore proposed that MITF might have a role in conferring a genetic predisposition to co-occurring melanoma and RCC. Here we identify a germline missense substitution in MITF (Mi-E318K) that occurred at a significantly higher frequency in genetically enriched patients affected with melanoma, RCC or both cancers, when compared with controls. Overall, Mi-E318K carriers had a higher than fivefold increased risk of developing melanoma, RCC or both cancers. Codon 318 is located in a small-ubiquitin-like modifier (SUMO) consensus site (PsiKXE) and Mi-E318K severely impaired SUMOylation of MITF. Mi-E318K enhanced MITF protein binding to the HIF1A promoter and increased its transcriptional activity compared to wild-type MITF. Further, we observed a global increase in Mi-E318K-occupied loci. In an RCC cell line, gene expression profiling identified a Mi-E318K signature related to cell growth, proliferation and inflammation. Lastly, the mutant protein enhanced melanocytic and renal cell clonogenicity, migration and invasion, consistent with a gain-of-function role in tumorigenesis. Our data provide insights into the link between SUMOylation, transcription and cancer.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bertolotto, Corine -- Lesueur, Fabienne -- Giuliano, Sandy -- Strub, Thomas -- de Lichy, Mahaut -- Bille, Karine -- Dessen, Philippe -- d'Hayer, Benoit -- Mohamdi, Hamida -- Remenieras, Audrey -- Maubec, Eve -- de la Fouchardiere, Arnaud -- Molinie, Vincent -- Vabres, Pierre -- Dalle, Stephane -- Poulalhon, Nicolas -- Martin-Denavit, Tanguy -- Thomas, Luc -- Andry-Benzaquen, Pascale -- Dupin, Nicolas -- Boitier, Francoise -- Rossi, Annick -- Perrot, Jean-Luc -- Labeille, Bruno -- Robert, Caroline -- Escudier, Bernard -- Caron, Olivier -- Brugieres, Laurence -- Saule, Simon -- Gardie, Betty -- Gad, Sophie -- Richard, Stephane -- Couturier, Jerome -- Teh, Bin Tean -- Ghiorzo, Paola -- Pastorino, Lorenza -- Puig, Susana -- Badenas, Celia -- Olsson, Hakan -- Ingvar, Christian -- Rouleau, Etienne -- Lidereau, Rosette -- Bahadoran, Philippe -- Vielh, Philippe -- Corda, Eve -- Blanche, Helene -- Zelenika, Diana -- Galan, Pilar -- French Familial Melanoma Study Group -- Aubin, Francois -- Bachollet, Bertrand -- Becuwe, Celine -- Berthet, Pascaline -- Bignon, Yves Jean -- Bonadona, Valerie -- Bonafe, Jean-Louis -- Bonnet-Dupeyron, Marie-Noelle -- Cambazard, Frederic -- Chevrant-Breton, Jacqueline -- Coupier, Isabelle -- Dalac, Sophie -- Demange, Liliane -- d'Incan, Michel -- Dugast, Catherine -- Faivre, Laurence -- Vincent-Fetita, Lynda -- Gauthier-Villars, Marion -- Gilbert, Brigitte -- Grange, Florent -- Grob, Jean-Jacques -- Humbert, Philippe -- Janin, Nicolas -- Joly, Pascal -- Kerob, Delphine -- Lasset, Christine -- Leroux, Dominique -- Levang, Julien -- Limacher, Jean-Marc -- Livideanu, Cristina -- Longy, Michel -- Lortholary, Alain -- Stoppa-Lyonnet, Dominique -- Mansard, Sandrine -- Mansuy, Ludovic -- Marrou, Karine -- Mateus, Christine -- Maugard, Christine -- Meyer, Nicolas -- Nogues, Catherine -- Souteyrand, Pierre -- Venat-Bouvet, Laurence -- Zattara, Helene -- Chaudru, Valerie -- Lenoir, Gilbert M -- Lathrop, Mark -- Davidson, Irwin -- Avril, Marie-Francoise -- Demenais, Florence -- Ballotti, Robert -- Bressac-de Paillerets, Brigitte -- England -- Nature. 2011 Oct 19;480(7375):94-8. doi: 10.1038/nature10539.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] INSERM, U895 (equipe 1), Equipe labelisee Ligue Contre le Cancer, C3M, 06204 Nice, France [2] Universite of Nice Sophia-Antipolis, UFR Medecine, 06204 Nice, France [3] Centre Hospitalier Universitaire de Nice, Service de Dermatologie, 06204 Nice, France [4].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22012259" target="_blank"〉PubMed〈/a〉
    Keywords: Carcinoma, Renal Cell/*genetics ; Cell Movement/genetics ; Gene Frequency ; *Genetic Predisposition to Disease ; *Germ-Line Mutation ; Humans ; Melanoma/*genetics ; Microphthalmia-Associated Transcription Factor/*genetics ; Neoplasm Invasiveness/genetics ; Sumoylation
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  • 91
    Publication Date: 2011-02-11
    Description: Staufen 1 (STAU1)-mediated messenger RNA decay (SMD) involves the degradation of translationally active mRNAs whose 3'-untranslated regions (3' UTRs) bind to STAU1, a protein that binds to double-stranded RNA. Earlier studies defined the STAU1-binding site within ADP-ribosylation factor 1 (ARF1) mRNA as a 19-base-pair stem with a 100-nucleotide apex. However, we were unable to identify comparable structures in the 3' UTRs of other targets of SMD. Here we show that STAU1-binding sites can be formed by imperfect base-pairing between an Alu element in the 3' UTR of an SMD target and another Alu element in a cytoplasmic, polyadenylated long non-coding RNA (lncRNA). An individual lncRNA can downregulate a subset of SMD targets, and distinct lncRNAs can downregulate the same SMD target. These are previously unappreciated functions of non-coding RNAs and Alu elements. Not all mRNAs that contain an Alu element in the 3' UTR are targeted for SMD even in the presence of a complementary lncRNA that targets other mRNAs for SMD. Most known trans-acting RNA effectors consist of fewer than 200 nucleotides, and these include small nucleolar RNAs and microRNAs. Our finding that the binding of STAU1 to mRNAs can be transactivated by lncRNAs uncovers an unexpected strategy that cells use to recruit proteins to mRNAs and mediate the decay of these mRNAs. We name these lncRNAs half-STAU1-binding site RNAs (1/2-sbsRNAs).〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073508/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073508/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gong, Chenguang -- Maquat, Lynne E -- GM074593/GM/NIGMS NIH HHS/ -- R01 GM074593/GM/NIGMS NIH HHS/ -- R01 GM074593-26/GM/NIGMS NIH HHS/ -- R01 GM074593-27/GM/NIGMS NIH HHS/ -- England -- Nature. 2011 Feb 10;470(7333):284-8. doi: 10.1038/nature09701.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, New York 14642, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21307942" target="_blank"〉PubMed〈/a〉
    Keywords: 3' Untranslated Regions/*genetics ; Alu Elements/*genetics ; Base Pairing ; Binding Sites ; Chromosomes, Human, Pair 11/genetics ; Computational Biology ; Cytoskeletal Proteins/*metabolism ; Down-Regulation ; HeLa Cells ; Humans ; Immunoprecipitation ; *Nucleic Acid Conformation ; Plasminogen Activator Inhibitor 1/genetics ; Poly A/genetics/metabolism ; Proteins ; *RNA Stability ; RNA, Double-Stranded/chemistry/genetics/metabolism ; RNA, Untranslated/chemistry/*genetics/metabolism ; RNA-Binding Proteins/genetics/*metabolism ; Software ; Substrate Specificity ; Trans-Activators/metabolism ; Transcriptional Activation/*genetics
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  • 92
    Publication Date: 2011-03-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peter, Marcus E -- England -- Nature. 2011 Mar 17;471(7338):310-2. doi: 10.1038/471310a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21412328" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, CD95/metabolism ; *Apoptosis ; CASP8 and FADD-Like Apoptosis Regulating Protein/*metabolism ; Caspase 8/genetics/*metabolism ; Cell Proliferation ; Embryo Loss/enzymology/genetics/metabolism ; Embryo, Mammalian/cytology/embryology/enzymology/metabolism ; Fas-Associated Death Domain Protein/deficiency/genetics/*metabolism ; GTPase-Activating Proteins/deficiency/genetics/*metabolism ; Humans ; Lymphocytes/cytology/immunology ; Mice ; *Necrosis/genetics ; Receptor-Interacting Protein Serine-Threonine ; Kinases/deficiency/genetics/*metabolism
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  • 93
    Publication Date: 2011-10-25
    Description: Members of the killer cell immunoglobulin-like receptor (KIR) family, a large group of polymorphic receptors expressed on natural killer (NK) cells, recognize particular peptide-laden human leukocyte antigen (pHLA) class I molecules and have a pivotal role in innate immune responses. Allelic variation and extensive polymorphism within the three-domain KIR family (KIR3D, domains D0-D1-D2) affects pHLA binding specificity and is linked to the control of viral replication and the treatment outcome of certain haematological malignancies. Here we describe the structure of a human KIR3DL1 receptor bound to HLA-B*5701 complexed with a self-peptide. KIR3DL1 clamped around the carboxy-terminal end of the HLA-B*5701 antigen-binding cleft, resulting in two discontinuous footprints on the pHLA. First, the D0 domain, a distinguishing feature of the KIR3D family, extended towards beta2-microglobulin and abutted a region of the HLA molecule with limited polymorphism, thereby acting as an 'innate HLA sensor' domain. Second, whereas the D2-HLA-B*5701 interface exhibited a high degree of complementarity, the D1-pHLA-B*5701 contacts were suboptimal and accommodated a degree of sequence variation both within the peptide and the polymorphic region of the HLA molecule. Although the two-domain KIR (KIR2D) and KIR3DL1 docked similarly onto HLA-C and HLA-B respectively, the corresponding D1-mediated interactions differed markedly, thereby providing insight into the specificity of KIR3DL1 for discrete HLA-A and HLA-B allotypes. Collectively, in association with extensive mutagenesis studies at the KIR3DL1-pHLA-B*5701 interface, we provide a framework for understanding the intricate interplay between peptide variability, KIR3D and HLA polymorphism in determining the specificity requirements of this essential innate interaction that is conserved across primate species.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723390/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723390/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vivian, Julian P -- Duncan, Renee C -- Berry, Richard -- O'Connor, Geraldine M -- Reid, Hugh H -- Beddoe, Travis -- Gras, Stephanie -- Saunders, Philippa M -- Olshina, Maya A -- Widjaja, Jacqueline M L -- Harpur, Christopher M -- Lin, Jie -- Maloveste, Sebastien M -- Price, David A -- Lafont, Bernard A P -- McVicar, Daniel W -- Clements, Craig S -- Brooks, Andrew G -- Rossjohn, Jamie -- G0501963/Medical Research Council/United Kingdom -- ZIA AI001026-04/Intramural NIH HHS/ -- Medical Research Council/United Kingdom -- England -- Nature. 2011 Oct 23;479(7373):401-5. doi: 10.1038/nature10517.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Victoria 3800, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22020283" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Binding Sites/genetics ; HLA-B Antigens/*chemistry/genetics/*immunology ; Humans ; Models, Molecular ; Mutant Proteins/chemistry/genetics/immunology ; Polymorphism, Genetic/genetics ; Protein Structure, Tertiary ; Receptors, KIR3DL1/*chemistry/genetics/*immunology ; Structure-Activity Relationship ; beta 2-Microglobulin/chemistry/immunology
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  • 94
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2011-06-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gong, Peng -- England -- Nature. 2011 Jun 2;474(7349):7. doi: 10.1038/474007a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Earth System Science, Tsinghua University, China. penggong@tsinghua.edu.cn〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21637215" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*economics/methods/statistics & numerical data/*trends ; China ; Food Supply/*statistics & numerical data ; Humans ; International Cooperation ; Public Policy ; Water Supply/economics
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  • 95
    Publication Date: 2011-07-15
    Description: Many cellular functions involve multi-domain proteins, which are composed of structurally independent modules connected by flexible linkers. Although it is often well understood how a given domain recognizes a cognate oligonucleotide or peptide motif, the dynamic interaction of multiple domains in the recognition of these ligands remains to be characterized. Here we have studied the molecular mechanisms of the recognition of the 3'-splice-site-associated polypyrimidine tract RNA by the large subunit of the human U2 snRNP auxiliary factor (U2AF65) as a key early step in pre-mRNA splicing. We show that the tandem RNA recognition motif domains of U2AF65 adopt two remarkably distinct domain arrangements in the absence or presence of a strong (that is, high affinity) polypyrimidine tract. Recognition of sequence variations in the polypyrimidine tract RNA involves a population shift between these closed and open conformations. The equilibrium between the two conformations functions as a molecular rheostat that quantitatively correlates the natural variations in polypyrimidine tract nucleotide composition, length and functional strength to the efficiency to recruit U2 snRNP to the intron during spliceosome assembly. Mutations that shift the conformational equilibrium without directly affecting RNA binding modulate splicing activity accordingly. Similar mechanisms of cooperative multi-domain conformational selection may operate more generally in the recognition of degenerate nucleotide or amino acid motifs by multi-domain proteins.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mackereth, Cameron D -- Madl, Tobias -- Bonnal, Sophie -- Simon, Bernd -- Zanier, Katia -- Gasch, Alexander -- Rybin, Vladimir -- Valcarcel, Juan -- Sattler, Michael -- England -- Nature. 2011 Jul 13;475(7356):408-11. doi: 10.1038/nature10171.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Structural Biology, Helmholtz Zentrum Munchen, Ingolstadter Landstrasse 1, 85764 Neuherberg, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21753750" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Base Sequence ; Humans ; Introns/genetics ; Ligands ; Models, Molecular ; Mutation ; Nuclear Magnetic Resonance, Biomolecular ; Nuclear Proteins/*chemistry/*metabolism ; Protein Binding ; Protein Structure, Tertiary ; Pyrimidines/metabolism ; RNA Precursors/*genetics/*metabolism ; RNA Splice Sites/genetics ; RNA Splicing/*physiology ; RNA, Messenger/genetics/*metabolism ; Ribonucleoproteins/*chemistry/*metabolism ; Spliceosomes/chemistry/metabolism ; Substrate Specificity
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 96
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2011-05-07
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schubert, Charlotte -- England -- Nature. 2011 May 5;473(7345):113-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21548192" target="_blank"〉PubMed〈/a〉
    Keywords: Humans ; Immune System/*immunology ; Research/economics/trends ; *Systems Biology/economics/education/trends
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  • 97
    Publication Date: 2011-08-26
    Description: Ebola virus (EboV) is a highly pathogenic enveloped virus that causes outbreaks of zoonotic infection in Africa. The clinical symptoms are manifestations of the massive production of pro-inflammatory cytokines in response to infection and in many outbreaks, mortality exceeds 75%. The unpredictable onset, ease of transmission, rapid progression of disease, high mortality and lack of effective vaccine or therapy have created a high level of public concern about EboV. Here we report the identification of a novel benzylpiperazine adamantane diamide-derived compound that inhibits EboV infection. Using mutant cell lines and informative derivatives of the lead compound, we show that the target of the inhibitor is the endosomal membrane protein Niemann-Pick C1 (NPC1). We find that NPC1 is essential for infection, that it binds to the virus glycoprotein (GP), and that antiviral compounds interfere with GP binding to NPC1. Combined with the results of previous studies of GP structure and function, our findings support a model of EboV infection in which cleavage of the GP1 subunit by endosomal cathepsin proteases removes heavily glycosylated domains to expose the amino-terminal domain, which is a ligand for NPC1 and regulates membrane fusion by the GP2 subunit. Thus, NPC1 is essential for EboV entry and a target for antiviral therapy.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3230319/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3230319/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cote, Marceline -- Misasi, John -- Ren, Tao -- Bruchez, Anna -- Lee, Kyungae -- Filone, Claire Marie -- Hensley, Lisa -- Li, Qi -- Ory, Daniel -- Chandran, Kartik -- Cunningham, James -- 5-T32-HL007623/HL/NHLBI NIH HHS/ -- 5K08AI079381/AI/NIAID NIH HHS/ -- K08 AI079381/AI/NIAID NIH HHS/ -- K12-HD052896/HD/NICHD NIH HHS/ -- R01 AI088027/AI/NIAID NIH HHS/ -- R01 CA104266/CA/NCI NIH HHS/ -- U54 AI057159/AI/NIAID NIH HHS/ -- U54 AI057159-09/AI/NIAID NIH HHS/ -- England -- Nature. 2011 Aug 24;477(7364):344-8. doi: 10.1038/nature10380.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Hematology, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21866101" target="_blank"〉PubMed〈/a〉
    Keywords: Adamantane/analogs & derivatives/chemistry ; Animals ; Antiviral Agents/*chemistry/*pharmacology ; Carrier Proteins/*metabolism ; Cathepsins/metabolism ; Cell Line ; Cercopithecus aethiops ; Ebolavirus/*drug effects/*physiology ; Endosomes/enzymology ; Glycoproteins/metabolism ; Hemorrhagic Fever, Ebola/drug therapy/metabolism ; Humans ; Membrane Fusion/drug effects ; Membrane Glycoproteins/*metabolism ; Molecular Weight ; Piperazines/chemistry ; Vero Cells ; Viral Fusion Proteins/metabolism ; Virus Internalization/*drug effects
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  • 98
    Publication Date: 2011-09-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Peca, Joao -- Feng, Guoping -- England -- Nature. 2011 Sep 7;477(7363):165-6. doi: 10.1038/477165a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21901002" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Humans ; *Models, Neurological ; Neural Inhibition/*physiology ; Neurons/*metabolism ; Prefrontal Cortex/*physiology/*physiopathology ; *Social Behavior
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  • 99
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2011-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pearson, Helen -- MC_U123092720/Medical Research Council/United Kingdom -- England -- Nature. 2011 Mar 3;471(7336):20-4. doi: 10.1038/471020a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368799" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Adult ; Aged ; *Aging/genetics/physiology ; Archives ; Child ; Child, Preschool ; *Cohort Studies ; Environment ; Epigenesis, Genetic ; Epigenomics ; Female ; Genetic Predisposition to Disease/genetics ; Great Britain/epidemiology ; *Health Surveys/economics/history/trends ; History, 20th Century ; History, 21st Century ; Humans ; Infant ; Infant, Newborn ; Male ; Middle Aged ; Obesity/etiology/genetics ; Phenotype ; Socioeconomic Factors ; Survival Rate ; Young Adult
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 100
    Publication Date: 2011-04-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schuh-Huerta, Sonya M -- Pera, Renee A Reijo -- England -- Nature. 2011 Apr 7;472(7341):46-7. doi: 10.1038/472046a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21475191" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/physiology ; Animals ; Bone and Bones/*metabolism ; Energy Metabolism ; Estrogens/physiology ; Female ; Fertility/genetics/*physiology ; Humans ; Male ; Mice ; Osteoblasts/secretion ; Osteocalcin/deficiency/genetics/*metabolism/secretion ; Osteogenesis/physiology ; Receptors, G-Protein-Coupled/metabolism ; Sex Characteristics ; Testis/physiology/secretion ; Testosterone/*biosynthesis/blood
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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