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  • Articles  (454)
  • nitrogen fixation  (234)
  • Oryza sativa  (222)
  • Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition  (454)
  • 1
    ISSN: 1432-0789
    Keywords: Key words Acid soil ; Brazilian Amazonia ; N use efficiency ; Priming effect ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  The objective of this study was to determine the efficiency of two N fertilizers, (NH4)2SO4 and urea, for rice (Oryza sativa L.) and rye-grass (Lolium multiflorum L.) cultivated in an Ultisol of central Amazonia using 15N as a tracer. Rice was cultivated in the field, while rye-grass was grown in a phytotron. Fertilization with (NH4)2SO4 caused a 16% increase in the yield of rice grains and urea a 36% increase. In both crops total N uptake and N use efficiency of the fertilizers were higher for urea than for (NH4)2SO4. The low values for N derived from fertilizer showed that the fertilizers contributed little to the total N absorbed by the plants. The "priming effect" or positive added N interaction (ANI) between the fertilizer N and soil organic N was observed, especially with urea. Immobilization by soil microorganisms was greater in the presence of urea, while losses were always higher with the (NH4)2SO4 treatments. These losses were significant, and their reduction should allow more efficient use of this N fertilizer. It is possible that the N use efficiency was higher for urea due to a pH increase, caused by urea hydrolysis, which in turn may have favoured the activity of nitrifying bacteria in this extremely acid soil.
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  • 2
    ISSN: 1432-0789
    Keywords: Key words Fallow ; Legumes ; Nitrogen fixation ; Oryza sativa ; Côte d'Ivoire
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Improving fallow quality in upland rice-fallow rotations in West Africa through the site-specific use of leguminous cover crops has been shown to sustain the productivity of such systems. We studied the effects of a range of residue management practices (removal, burning, mulching and incorporation) on fallow biomass and N accumulation, on weed biomass and yield response of upland rice and on changes in soil physical and chemical characteristics in 2-year field trials conducted in three agroecological zones of Côte d'Ivoire. Across fallow management treatments and agroecological zones, rice yields were on average 20–30% higher in legume than in natural fallow plots. Weed biomass was highest in the savanna zone and lowest in the bimodal forest and tended to be less following a legume fallow. Regardless of the type of fallow vegetation and agroecological zone, biomass removal resulted in the lowest rice yields that varied from 0.5 t ha–1 in the derived savanna zone to 1.5 t ha–1 in the Guinea savanna zone. Burning of the fallow vegetation significantly increased yield over residue removal in the derived savanna (0.27 t ha–1, P〈0.05) and bimodal forest zones (0.27 t ha–1, P〈0.01), but not in the Guinea savanna. In both savanna environments, residue incorporation was superior to the farmers' practice of residue removal and rice yield increases were related to amounts of fallow N returned to the soil (r 2=0.803, P〈0.01). In the forest zone, the farmers' practice of residue burning produced the highest yield (1.43 t ha-1 in the case of legumes) and resulted in the lowest weed biomass (0.02 t ha–1). Regardless of the site, improving the quality of the fallow or of its management had no significant effects on either soil physical or soil chemical characteristics after two fallow cycles. We conclude that incorporation of legume residues is a desirable practice for rice-based fallow rotation systems in savanna environments. No promising residue management alternatives to slash-and-burn were apparent for the forest zone. Determining the possible effects on soil productivity will require longer-term experiments.
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  • 3
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    Springer
    Nutrient cycling in agroecosystems 58 (2000), S. 141-159 
    ISSN: 1573-0867
    Keywords: methane ; rice ; Oryza sativa ; anaerobic ; model ; simulation ; carbon dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The development of the MERES (Methane Emissions in Rice EcoSystems) model for simulating methane (CH4) emissions from rice fields is described. The CERES-Rice crop simulation model was used as a basis, employing the existing routines simulating soil organic matter (SOM) decomposition to predict the amount of subsrate available for methanogenesis. This was linked to an existing submodel, described elsewhere in this volume (Arah & Kirk, 2000), which calculates steady-state fluxes and concentrations of CH4 and O2 in flooded soils. Extra routines were also incorporated to simulate the influence of the combined pool of alternative electron acceptors in the soil (i.e., NO3 −, Mn4+, Fe3+, SO4 2−) on CH4 production. The rate of substrate supply is calculated in the SOM routines of the CERES-Rice model from (a) the rate of decomposition of soil organic material including that left from the previous crop and any additions of organic matter, (b) root exudates (modified from the original CERES-Rice model using recent laboratory data), and (c) the decomposition of dead roots from the current crop. A fraction of this rate of substrate supply, determined by the concentration of the oxidized form of the alternative electron acceptor pool, is converted to CO2 by bacteria which outcompete the methanogenic bacteria, thereby suppressing CH4 production. Any remaining fraction of the substrate supply rate is assumed to be potentially available for methanogenesis. The CH4 dynamics submodel uses this potetial methanogenesis rate, along with a description of the root length distribution in the soil profile supplied by the crop model, to calculate the steady-state concentrations and fluxes of O2 and CH4. The reduced form of the alternative electron acceptor pool is allowed to reoxidize when soil pores fill with air if the field is drained. The MERES model was able to explain well the seasonal patterns of CH4 emissions in an experiment involving mid- and end-season drainage and additions of organic material at IRRI in the Philippines.
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  • 4
    ISSN: 1573-0867
    Keywords: methane ; rice ; Oryza sativa ; anaerobic ; model ; simulation ; carbon dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The MERES (Methane Emissions from Rice EcoSystems) simulation model was tested using experimental data from IRRI and Maligaya in the Philippines and from Hangzhou in China. There was good agreement between simulated and observed values of total aboveground biomass, root weight, grain yield, and seasonal methane (CH4) emissions. The importance of the contribution of the rice crop to CH4 emissions was highlighted. Rhizodeposition (root exudation and root death) was predicted to contribute about 380 kg C ha−1 of methanogenic substrate over the season, representing 37% of the total methanogenic substrate from all sources when no organic amendments were added. A further 225 kg C ha−1 (22%) was predicted to come from previous crop residues, giving a total of around 60% originating from the rice crop, with the remaining 41% coming from the humic fraction of the soil organic matter (SOM). Sensitivity analysis suggested that the parameter representing transmissivity to gaseous transfer per unit root length (λr) was important in determining seasonal CH4 emissions. As this transmissivity increased, more O2 was able to diffuse to the rhizosphere, so that CH4 production by methanogens was reduced and more CH4 was oxidized by methanotrophs. These effects outweighed the opposing influence of increased rate of transport of CH4 through the plant, so that the overall effect was to reduce the amount of CH4 emitted over the season. Varying the root-shoot ratio of the crop was predicted to have little effect on seasonal emissions, the increased rates of rhizodeposition being counteracted by the increased rates of O2 diffusion to the rhizosphere. Increasing the length of a midseason drainage period reduced CH4 emissions significantly, but periods longer than 6–7 d also decreased rice yields. Organic amendments with low C/N were predicted to be more beneficial, both in terms of enhancing crop yields and reducing CH4 emissions, even when the same amount of C was applied. This was due to higher rates of immobilization of C into microbial biomass, removing it temporarily as a methanogenic substrate.
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  • 5
    ISSN: 1573-5036
    Keywords: drought ; Heterodera sacchari ; nematode ; Oryza glaberrima ; Oryza sativa ; plant water status ; rice ; West Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract This study was undertaken to examine the influence of cyst nematodes (Heterodera sacchari) and drought stress, in isolation and combination, on the water status and growth of rice in Côte d'Ivoire. Drought is considered one of the main yield-limiting factors to upland rice in West Africa, while H. sacchari is emerging as a potentially serious pest. A field study conducted during 1997 at the West Africa Rice Development Association (WARDA) showed that under low water availability in sandy soil, damage to a nematode susceptible Oryza sativa (cv IDSA6) is significant. Visual drought score and physiological parameters were significantly affected (P≤0.01) in plots with a mean population density of 39.4 H. sacchari eggs ml-1 soil at 81 days after sowing, compared to plots with a mean density of 1.2 eggs ml-1. Stomatal conductance, leaf water potential and relative water content were lower, leaf chlorophyll content was greater, and near total yield losses were observed in higher nematode density plots. In 1-l pots following 5 days of imposed drought, the H. sacchari-resistant and drought-resistant O. glaberrima (cv CG14) showed a reduction in stomatal conductance of 73% and in leaf water potential by 0.96 MPa (54%). The effect of H. sacchari (473 eggs l-1 soil) inoculated as cysts to soil before sowing was similar but less severe. The combination of both stresses had similar but yet more pronounced effects than the single stresses on stomatal conductance, leaf water potential and leaf dry weight in CG14. IDSA6 responded in a similar manner to CG14, but less acutely to both stresses. Only the combined stresses resulted in a significant (P≤0.05) reduction in osmotic potential and root dry weight compared with the control, for either CG14 or IDSA6. It is suggested that H. sacchari increased the effects of drought and drought-related losses. This may give a false impression of drought susceptibility in field screening for cultivars, and complicate models which predict crop damage caused by nematodes.
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  • 6
    ISSN: 1573-5060
    Keywords: gamete abortion ; Oryza sativa ; pollen ; wide compatibility
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Utilization of the pronounced heterosis of indica-japonica hybrids in rice had been difficult due to panicle sterility caused by male and female gamete abortion in such hybrids. But the female gamete abortion in the most indica-japonicahybrids has been solved by using an abortion-neutral gene S-5 n called as wide compatibility gene. On the other hand, the problem of pollen sterility remains to be solved for such hybrids. This study was conducted to identify abortion-neutral genes for pollen that may be utilized to alleviate pollen sterility in distant crosses. Some cultivars like Ketan Nangka (KN) and Dular, which are known as wide compatibility variety (WCV), were tested to find whether they possess neutral alleles for segregation distortion of marker genes. The distorted segregation of markers as well as normal segregation were confirmed among progeny lines of three-way crosses, WCV/indica//japonica and japonica//indica/WCV. Neutral alleles for segregation distortion were identified at two gamete gene loci (ga), i.e., ga-14(t) on chromosome 3 and ga-11 on chromosome 7. A new locus ga-14(t) was identified in between Pgi-1 and bc-1 and independent of ga-3 on chromosome 3. The neutral alleles at the two loci may be used to solve pollen sterility in indica-japonica hybrids.
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  • 7
    ISSN: 1573-5060
    Keywords: grain yield ; leaf K/Na ratio ; Oryza sativa ; salinity ; screening tools ; yield reduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Salinity is a major constraint to irrigated rice production, particularly in semi-arid and arid climates. Irrigated rice is a well suited crop to controlling and even decreasing soil salinity, but rice is a salt-susceptible crop and yield losses due to salinity can be substantial. The objective of this study was to develop a highly predictive screening tool for the vegetative growth stage of rice to estimate salinity-induced yield losses. Twenty-one rice genotypes were grown over seven seasons in a field trials in Ndiaye, Senegal, between 1991 and 1995 and were subjected to irrigation with moderately saline water (3.5 mS cm-1, electrical conductivity) or irrigation with fresh water. Potassium/sodium ratios of the youngest three leaves (K/NaLeaves) were determined by flame photometry at the late vegetative stage. Grain yield was determined at maturity. All cultivars showed strong log-linear correlations between K/NaLeaves and grain yield, but intercept and slope of those correlations differed between seasons for a given genotype and between genotypes. The K/NaLeaves under salinity was related to grain yield under salinity relative to freshwater controls. There was a highly significant correlation (p 〈 0.001) between K/NaLeaves and salinity-induced grain yield reduction: the most susceptible cultivars had lowest K/NaLeaves and the strongest yield reductions. Although there were major differences in the effects of salinity on crops in both the hot dry season (HDS) and the wet season, the correlation was equally significant across cropping seasons. The earliest possible time to establish the relationship between K/NaLeaves under salinity and grain yield reduction due to salinity was investigated in an additional trial in the HDS 1998. About 60 days after sowing, salinity-induced yield loss could be predicted through K/NaLeaves with a high degree of confidence (p 〈 0.01). A screening system for salinity resistance of rice, particularly in arid and semi-arid climates, is proposed based on the correlation between K/NaLeaves under salinity and salinity-induced yield losses.
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  • 8
    ISSN: 1573-5060
    Keywords: genetic transformation ; japonica rice cultivar ; mature embryo ; Oryza sativa ; plant regeneration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To establish a plant regeneration system from embryogenic callus derived from mature rice embryos, the addition of aminoacids and the effect of two macronutrient solutions MSD and N6D to the basal callus induction medium was tested in three Spanish varieties, Senia, Tebre and Bahia. Aminoacids enhanced the production of embryogenic callus in Tebre and Senia whereas in the case of Bahia, embryogenic callus, which gave rise to a high rate of differentiated shoots, was induced without aminoacids. The macronutrient solution had also to be adjusted for each variety. Pre-regeneration treatment with ABA significantly improved the regeneration rate in all media tested, independently of the media in which the embryogenic callus were induced. In a comparison of growth regulators, BA yielded more shoots than Kin in all varieties whereas the effect of the auxins NAA or IAA was dependent on the variety. Transgenic plants from the three varieties were obtained via an Agrobacterium tumefaciens transformation system, using the optimised culture media.
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  • 9
    ISSN: 1573-5036
    Keywords: mechanical impedance ; Oryza sativa ; rice ; roots ; screening ; wax layers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The development of a wax layer method for screening the ability of rice (Oryza sativa L.) roots to overcome mechanical impedance is described. Wax layers (3 mm thick) made of mixtures of white soft paraffin and paraffin wax were installed 50 mm deep in tubes of sand. The sand was watered with nutrient solution and planted with 3-d old rice seedlings. The numbers of root axes per plant that had penetrated the wax layers 24 d after planting were counted. The ratio of penetrated to total root axes per plant gave a misleading measure of root penetration ability, as rice varieties differed in the ratio of penetrated to total axes in a low impedance (3% wax) control. In non-flooded conditions, a 60% wax layer decreased root penetration (number of roots penetrating the wax layer per plant) to a mean of 74% of the low impedance control, whereas an 80% wax layer decreased mean root penetration to 31% of the control. The best measure of root penetration in non-flooded conditions was the number of axes penetrating an 80% wax layer. Flooding decreased root penetration of a 60% wax layer to a mean of 26% of the low impedance control. The best measure of root penetration in flooded conditions was the number of axes penetrating a 60% wax layer.
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  • 10
    ISSN: 1573-5036
    Keywords: cadmium ; membrane permeability ; Oryza sativa ; respiration ; transmembrane electrical potential difference (Em)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Among other detrimental effects of the heavy metal Cd2+, a decrease in the plant content of essential mineral nutrients is known. In this study, the effect of Cd2+ on different physiological activities of rice roots involved in nutrient acquisition has been studied. Upon addition of 0.1 or 1 mM Cd2+ to the experimental solution, root cell membranes depolarized in few minutes, reaching very low Em values. This effect was transient and the initial membrane potential recovered totally within 6–8 h. Only the highest concentration used had an inhibitory effect on root respiration. Significant respiratory inhibition appeared after 2 h of exposure to Cd2+ and lasted for at least 4 h. In turn, membrane permeability increased in the presence of Cd2+ for at least 8 h, inducing K+ efflux from the roots. The relationship between these parameters and their possible involvement in lowered nutrient content in Cd2+-treated plants is discussed.
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  • 11
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    Plant and soil 219 (2000), S. 285-289 
    ISSN: 1573-5036
    Keywords: actinorhizal plants ; Frankia ; 15N natural abundance ; nitrogen fixation ; Parasponia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Substantial enrichment of some plant parts in 15N relative to the rest of the plant is unusual, but is found in the nitrogen-fixing nodules of many legumes. A range of actinorhizal plants was surveyed to determine whether the nodules of any of them are also substantially enriched in 15N. The nonlegume Parasponia, nodulated by a rhizobium, was also included. Four of the actinorhizal genera and Parasponia were grown in N-free culture, and three actinorhizal genera were collected from the field. Nodules of Parasponia, Casuarina and Alnus were15N enriched relative to other plant parts, but only Parasponia approached the degree of enrichment found in some legume nodules. The nodules of Datisca, Myrica, Elaeagnus, Shepherdia, and Coriaria were depleted in 15N. Thus many actinorhizal nodules are depleted in 15N compared to other plant parts and enrichment is modest when it does occur. Whole plant 15N content (δ15N) in four actinorhizal plants and Parasponia showed a relatively narrow range of −1.41 to −1.90. Hence regardless of the degree of nodule enrichment or depletion, whole plant 15N content appears to vary little in plants grown in N-free culture.
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  • 12
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    Plant growth regulation 30 (2000), S. 139-144 
    ISSN: 1573-5087
    Keywords: ammonium ; methionine sulfoximine ; Oryza sativa ; proline accumulation ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ammonium accumulation in relation to prolineaccumulation in detached rice leaves under stressconditions was investigated. Ammonium accumulation indark-treated detached rice leaves preceded prolineaccumulation. Ammonium accumulation caused by waterstress coincided closely with proline accumulation indetached rice leaves. Exogenous NH4Cl andmethionine sulfoximine (MSO), which caused anaccumulation of ammonium in detached rice leaves,increased proline content. It was found that prolinein NH4Cl- or MSO-treated rice leaves is lessutilized than in water-treated rice leaves (controls). These results are in agreement with the observationthat a decrease in proline utilization contributes tothe accumulation of proline in dark-treated and waterstressed rice leaves. Although ammonium contentincreased in Cd- and Cu-treated rice leaves, theincrease in ammonium content was only observed afterthe increase in proline content.
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  • 13
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    Plant growth regulation 30 (2000), S. 151-155 
    ISSN: 1573-5087
    Keywords: ascorbate peroxidase ; catalase ; glutathione reductase ; glycolate oxidase ; hydrogen peroxide ; Oryza sativa ; peroxidase ; superoxide dismutase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The effect of NaCl stress on H2O2 metabolismin detached rice leaves was studied. NaCl (200 mM)treatment did not cause the accumulation ofH2O2 and resulted in no increase in lipidperoxidation and membrane leakage of leaf tissues. The activities of peroxidase, ascorbate peroxidase,superoxide dismutase, and glutathione reductase wereobserved to be greater in NaCl-stressed rice leavesthan in control leaves. However, glycolate oxidasewas lower in NaCl-treated rice leaves than in thecontrol leaves. There was no difference in catalaseactivity between NaCl and control treatments. Theseresults suggest that some antioxidant enzymes can beactivated in response to oxidative stress induced byNaCl.
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  • 14
    ISSN: 1573-5087
    Keywords: auxin binding isotherm ; auxin receptor ; dose response curve ; H+-ATPase ; iIndole-3-acetic acid ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract An auxin receptor protein, isolated from the soluble fractionsof rice shoots and roots, was characterised in terms of the affinity andspecificity for IAA and the modulating effect onH+-ATPase of plant plasma membrane. The receptor proteingives a biphasic binding isotherm for IAA, indicating the existence ofthe primary and secondary binding sites. The predominant isoform of thereceptor in roots shows much higher affinity to IAA compared with thatin shoots. Being monomeric protein with about the same molecular mass(57–58 kDa) and showing a similar chromatographic behaviour, bothisoforms mediate IAA-induced modulation of the plasma membraneH+-ATPase in the respective IAA concentration rangesseparated by ca. 3 orders of magnitudes(10-10–10-7 M vs.10-7–10-4 M). Analysis of kinetic data ofthe H+-ATPase activity revealed that the receptor perse functions as an effector of the enzyme, causing a decrease inKm and an increase in Vmax through protein-proteininteraction at a 1:1 ratio. Further, it appeared that, while IAAdoes not affect by itself the kinetic parameters of theH+-ATPase, the auxin exerts its effect via thereceptor, biphasically regulating the efficiency of the effectormolecule probably by inducing two-phase conformational changes thatinvolve IAA binding to two separate binding sites. It was also foundthat other active auxins examined, such as indole-3-propionic acid,1-naphthalene acetic acid and 2,4-dichlorophenoxyacetic acid, do notwork together with the receptor to elicit the same response of theH+-ATPase as seen with IAA.
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  • 15
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    Plant and soil 218 (2000), S. 1-10 
    ISSN: 1573-5036
    Keywords: dry matter reduction ; leaf chlorophyll content ; leaf sodium uptake ; Oryza sativa ; photosynthesis ; salinity ; season effects
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Salinity is a major yield-reducing factor in coastal and arid, irrigated rice production systems. Salt tolerance is a major breeding objective. Three rice cultivars with different levels of salt tolerance were studied in the field for growth, sodium uptake, leaf chlorophyll content, specific leaf area (SLA), sodium concentration and leaf CO2 exchange rates (CER) at photosynthetic active radiation (PAR)-saturation. Plants were grown in Ndiaye, Senegal, at a research station of the West Africa Rice Development Association (WARDA), during the hot dry season (HDS) and the wet season (WS) 1994 under irrigation with fresh or saline water (flood water electrical conductivity = 3.5 mS cm-1). Relative leaf chlorophyll content (SPAD method) and root, stem, leaf blade and panicle dry weight were measured at weekly intervals throughout both seasons. Specific leaf area was measured on eight dates, and CER and leaf sodium content were measured at mid-season on the first (topmost) and second leaf. Salinity reduced yields to nearly zero and dry-matter accumulation by 90% for the susceptible cultivar in the HDS, but increased leaf chlorophyll content and CER at PAR- saturation. The increase in CER, which was also observed in the other cultivars and seasons, was explained by a combination of two hypotheses: leaf chlorophyll content was limited by the available N resources in controls, but not in salt-stressed plants; and the sodium concentrations were not high enough to cause early leaf senescence and chlorophyll degradation. The growth reductions were attributed to loss of assimilates (mechanisms unknown) that must have occurred after export from the sites of assimilation. The apparent, recurrent losses of assimilates, which were between 8% and 49% according to simulation with the crop model for potential yields in irrigated rice, ORYZA S, might be partly due to root decomposition and exudation. Possibly more importantly, energy-consuming processes, such as osmoregulation, interception of sodium and potassium from the transpiration stream in leaf sheaths and their subsequent storage, drained the assimilate supply.
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  • 16
    ISSN: 1573-5036
    Keywords: CO2 enrichment ; carbon storage ; climate change ; dissolved organic carbon ; nitrogen fixation ; root exudate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Root exudation has been hypothesized as one possible mechanism that may lead to increased inputs of organic C into the soil under elevated atmospheric CO2, which could lead to greater long-term soil C storage. In this study, we analyzed exudation of dissolved organic C from the roots of seedlings of the N-fixing tree Robinia pseudoacacia L. in a full factorial design with 2 CO2 (35.0 and 70.0 Pa) × 2 temperature (26° and 30 °C during the day) × 2 N fertilizer (0 and 10.0 mM N concentration) levels. We also analyzed the decomposition rates of root exudate to estimate gross rates of exudation. Elevated CO2 did not affect root exudation of organic C. A 4 °C increase in temperature and N fertilization did, however, significantly increase organic C exudation rates. Approximately 60% of the exudate decomposed relatively rapidly, with a turnover rate of less than one day, while the remaining 40% decomposed more slowly. These results suggest that warmer climates, as predicted for the next century, may accelerate root exudation of organic C, which will probably stimulate rapid C cycling and may make a minor contribution to intermediate to more long-term soil C storage. However, as these losses to root exudation did not exceed 1.2% of the net C fixed by Robinia pseudoacacia, root exudation of organic C appears to have little potential to contribute to long-term soil C sequestration.
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  • 17
    ISSN: 1573-5036
    Keywords: elevated CO2 ; FACE ; Lolium perenne L. ; N concentration ; nitrogen fixation ; plant litter ; species composition ; Trifolium repens L
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Experimental findings indicate that, in terrestrial ecosystems, nitrogen cycling changes under elevated partial pressure of atmospheric CO2 (pCO2). It was suggested that the concentration of N in plant litter as well as the amount of litter are responsible for these changes. However, for grassland ecosystems, there have been no relevant data available to support this hypothesis. Data from five years of the Swiss FACE experiment show that, under fertile soil conditions in a binary plant community consisting of Lolium perenne L. and Trifolium repens L., the concentration of litter N does not change under elevated atmospheric pCO2; this applies to harvest losses, stubble, stolons and roots as the sources of litter. This is in strong contrast to the CO2 response of L. perenne swards without associated legumes; in this case the above-ground concentration of biomass N decreased substantially. Increased symbiotic N2 fixation in T. repens nodules and a greater proportion of the N-rich T. repens in the community are regarded as the main mechanisms that buffer the increased C introduction into the ecosystem under elevated atmospheric pCO2. Our data also suggest that elevated atmospheric pCO2 results in greater amounts of litter, mainly due to increased root biomass production. This study indicates that, in a fertile grassland ecosystem with legumes, the concentration of N in plant litter is not affected by elevated atmospheric pCO2 and, thus, cannot explain CO2-induced changes in the cycling of N.
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  • 18
    ISSN: 1573-8248
    Keywords: biological control ; Oryza sativa ; rice sheath blight
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Bacterial formulations, produced using both Bacillus megaterium andB. pumilus individually with pharmaceutical technology, were testedunder both greenhouse and field conditions. In the greenhouse testing,some bacterial formulations, for instance For 7 minus Lac and For 16 minusLac, performed as well as freshly prepared bacterial antagonists insuppress sheath blight disease. In the field testing, For 16 minus Lac wasnot effective in suppressing sheath blight development. Failure of the For16 minus Lac to suppress sheath blight disease in the field trial may be dueto the dilution and inactivation of antibiotics produced by B.megaterium in the aquatic environment in the rice field and climaticconditions during the formulation application.
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  • 19
    ISSN: 1573-8469
    Keywords: Magnaporthe grisea ; Pseudomonas syringae pv. syringae ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Rice seedlings treated with the synthetic compound benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester (BTH) acquired resistance to subsequent attack by the rice blast fungus Magnaporthe grisea (Hebert) Barr. BTH (trade name Bion™) has been released to the market as a plant protecting agent for rice. Here, we analysed the pattern of expressed genes in rice plants treated with BTH, and compared this pattern with those induced by the formerly discovered resistance inducer 2,6-dichloroisonicotinic acid (INA) and by Pseudomonas syringae pv. syringae, a non-host pathogen inducing a hypersensitive response. Both INA and BTH induced similar patterns of genes, suggesting that these compounds are functional analogues. In contrast, the patterns induced by the chemical inducers and by P. syringae were clearly dissimilar.
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  • 20
    ISSN: 1573-5060
    Keywords: microsatellite ; Oryza sativa ; polymorphism ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ten microsatellite loci were analysed for 43 cultivars or breeding lines of rice. Polymorphism-Information-Content values ranged from 0.62 to 0.92. The microsatellite markers were found to be useful for cultivar identification and assessment of genetic relationships. Most of the cultivars could be uniquely identified by at least one microsatellite marker. Genetic heterogeneity was detected within rice samples by amplification of microsatellites from DNA extracted from multiple individual plants and also from bulked DNA preparations.
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  • 21
    ISSN: 1573-5060
    Keywords: doubled haploids ; genetics ; haploids ; induced variation ; Oryza sativa ; ovary culture ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plants derived from unpollinated ovary culture of ten rice genotypes showed significant variability in agro-morphological characteristics. The ovary-derived plant (H1) populations were completely haploid, doubled haploid or haploid-doubled haploid mixture. Haploids had very drastic reduction in plant height, panicle length, grain length, breadth and number and spikelet fertility (0.0%–2.1%). Doubled haploids from the hybrid of UPRI 95–121 × UPRI 95–165 were normal with fertility ranging between 69.6% and 97.7%. A genetic segregation in ratio of 1:1 was observed for five pigmentation characters in the H1 population derived from hybrid UPRI 95–122 × UPRI 95–165. Plant height showed the largest coefficient of variability (28.5%) followed by the number of spikelets per panicle (24.2%), number of grains per panicle (22.0%), percent seed set (9.2%) and panicle length (9.0%). The range of variation in the H1 population from fully fertile hybrid PMS 2A (CMS) × IR 31802 (restorer) was similar to its corresponding F2 population for plant height, spikelet fertility and number of grains/panicle. A single clone of plants from the cultivar BG 1321 exhibited complete male sterility but normal female fertility when pollinated with other varieties. Ovary-derived plants from the CMS lines PMS 2A and IR 58025A showed stable male sterility and those from thermosensitive genetic male sterile line UPRI 95–140 showed thermosensitive genetic male sterility. These lines have potential in the hybrid breeding program and are being currently exploited.
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  • 22
    ISSN: 1573-5060
    Keywords: genic male-sterility gene ; mapping ; molecular markers ; Oryza sativa ; pleiotropic effect
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A genic male-sterility gene newly induced by chemical mutagenesis, tentatively designated as ms-h(t), was located on the molecular map of rice and tested for its effect on chalky endosperm. Bulked segregant analysis was used to determine the chromosomal location of the ms-h(t) locus by screening four to five RFLP markers per chromosome. After confirming that the gene was located on chromosome 9, twenty-four RFLP markers from chromosome 9 were surveyed for polymorphism in the parents of the mapping population. Of these, eleven markers were mapped around the ms- h(t) locus. RG451 and RZ404 flanked the ms-h(t) gene, at 2.5cM and 3.3cM, respectively. Heterozygous F2 to F4 progenies were tested for co- segregation of male-sterility and chalky endosperm and it was revealed that ms-h(t) might have a pleiotropic effect on chalky endosperm. This mutant would be a good biological material to characterize the biochemical mechanism of male sterility and related pleiotropic effects. Further studies should be needed to know the usefulness of this mutant for hybrid seed production.
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  • 23
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    Plant growth regulation 27 (1999), S. 191-194 
    ISSN: 1573-5087
    Keywords: ornithine-δ-aminotransferase ; proline accumulation ; Oryza sativa ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Proline is synthesized either from glutamate or from ornithine in plants. Relatively little is known about the contribution of the pathway from ornithine to proline biosynthesis. In this paper we investigated the contribution of ornithine-δ-aminotransterase (OAT), an enzyme responsible for ornithine pathway, to proline accumulation in water-stressed detached rice leaves. Although OAT activity increased with the increase of water stress duration, a pattern similar to that obtained for proline accumulation, the ornithine pathway in rice leaves seems to contribute little, if any, to proline accumulation under water stress condition. This conclusion was based on the observations that (a) gabaculine (50 μM), an inhibitor of OAT, inhibited about 75% OAT activity caused by water stress but reduced only 20% of proline content and (b) cycloheximide, a protein synthesis inhibitor, had no effect on OAT activity induced by water stress but significantly reduced proline accumulation.
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  • 24
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    Plant growth regulation 28 (1999), S. 17-20 
    ISSN: 1573-5087
    Keywords: abscisic acid ; ammonium ; leaf senescence ; methyl jasmonate ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Both abscisic acid (ABA) and jasmonates are known to promote leaf senescence. Since ABA and jasmonates have both chemical and physiological similarities, we are interested to know whether senescence of detached rice leaves induced by methyl jasmonate (MJ) is mediated through an increase in endogenous ABA levels. In darkness, the endogenous level of ABA in detached rice leaves remained unchanged in the first day of incubation in water and increased about 5 times its initial value in the second day. However, the pattern of senescence, as judged by protein loss, was rapid during the first day. MJ significantly promoted senescence of detached rice leaves. Contrary to our expectation, endogenous ABA levels decreased in MJ-treated detached rice leaves. Similar to the effect of MJ, endogenous ABA levels decreased in detached rice leaves which were induced to senesce by treatment with NH4Cl. These results suggest that endogenous ABA levels are not linked to MJ-induced senescence of detached rice leaves.
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  • 25
    ISSN: 1573-5087
    Keywords: 1-aminocyclopropane-1-carboxylate (ACC) oxidase ; ethylene ; Oryza sativa ; ozone ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Exposure to ozone at 1 µl l−1 for 6 h induced ethylene production in rice (Oryza sativa L. cv. Hitomebore) leaves. The stimulation of ethylene production was detectable 2 h after the start of the exposure to ozone, and lasted for 6 h after the exposure. A 429-bp cDNA fragment encoding ACC oxidase was obtained by RT-PCR from ozone-treated rice leaves. Its nucleotide sequence and deduced amino-acid sequence had 97.2% and 94.4% identity, respectively, to those of OS1A1COX, which was previously obtained from deepwater rice. The abundance of the cDNA increased in accordance with the induction of ethylene production by the exposure to ozone.
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  • 26
    ISSN: 1573-5109
    Keywords: AFLP analysis ; DNA fingerprinting ; genetic diversity ; Indian rice varieties ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To assess diversification of indica rice, fingerprinting of 42 Indian rice varieties (Oryza sativa L) and one accession of O. brachyantha Chev. et Roehr. was taken up using amplified fragment length polymorphism (AFLP). Six primer combinations of PstI and MseI were used for this purpose. On denaturing polyacrylamide sequencing gel, on average 41 scorable AFLP bands were obtained of which 81% were polymorphic. Each variety revealed a distinct fingerprint. Data were scored on the basis of presence and absence of bands and cluster analysis was performed using Dice similarity coefficients. The resultant dendrogram showed four major clusters and traits. Some varieties especially landraces revealed more polymorphism and unique loci. Such study will be a valuable tool for proper choice of parents in mapping populations or breeding programs to produce heterotic several inexplicable minor clusters. Some varieties were grouped according to parentages of the cross while some were grouped according to physiological combinations apart from providing a characteristic fingerprint.
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  • 27
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    Genetic resources and crop evolution 46 (1999), S. 13-17 
    ISSN: 1573-5109
    Keywords: F2 weakness ; reproductive barrier ; Oryza sativa ; gene distribution ; clinal variation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In a backcrossing program to introduce the wx (glutinous endosperm) gene from a Thai upland rice cultivar, Col.No.15, to a Japanese cultivar, Sasanishiki, of Asian cultivated rice, Oryza sativa L., weak plants were observed in the BC1F1 generation. These weak plants were characterized by poor growth and discoloration at the tillering stage, though they were completely fertile. Hybrid breakdown, which is defined as hybrid weakness and sterility detected in the F2 and later inbred generations of varietal crosses, is controlled by a pair of recessive genes, hwd1 and hwd2, at unlinked loci. Two dominant genes at either the same or different loci, Hwd1/Hwd1 hwd2/hwd2, hwd1/hwd1 Hwd2/Hwd2 or Hwd1/hwd1 Hwd2/hwd2, are needed for normal growth. Using tester lines homozygous for a pair of recessive genes selected in the BC1F3 generation, the genotypes for hybrid breakdown of 100 Asian rice cultivars were determined based on the phenotype of F1 plants. Clinal variation for hybrid breakdown was observed. Cultivars with two dominant alleles at either hwd1 or hwd2 locus, were mainly found in insular Asia (Japan, Philippines and Indonesia), while the frequency of cultivars with four dominant alleles was more common in cultivars from continental Asia. Roles of hybrid breakdown in genetic differentiation of Asian cultivated rice are discussed.
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  • 28
    ISSN: 1573-5087
    Keywords: 2,6-diisopropylphenoxyacetic acid ; gibberellin ; Oryza sativa ; rice ; shoot elongation ; uniconazole
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract 2,6-Diisopropylphenoxyacetic acid (DIPA), a promoter of growth and flowering of Sagittaria species, was found to improve the shoot growth of rice plants treated with uniconazole, an inhibitor of gibberellin (GA) biosynthesis. In a modified micro-drop bioassay using semi-dwarf rice, Oryza sativa L. cv. Tan-ginbozu, in which uniconazole had been incorporated into the agar medium, a significant recovery from growth inhibition was observed for both the 3rd and the 4th leaf sheaths but not for the 2nd sheath. In greenhouse experiments, uniconazole-treated rice plants partially recovered from growth inhibition when DIPA was applied after uniconazole treatment, whereas DIPA applied with, or before, uniconazole treatment did not improve growth. The levels of GA1 and GA20 in the rice plants treated with uniconazole plus DIPA were almost equal to those of the untreated controls, indicating that the observed growth recovery is attributable to the restoration of GA biosynthesis by DIPA.
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  • 29
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    Plant growth regulation 29 (1999), S. 123-133 
    ISSN: 1573-5087
    Keywords: Oryza sativa ; drought resistance ; root morphology ; root growth ; osmotic adjustment ; review
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The use of molecular markers in the mapping of traits of agronomic importance holds great promise for speeding the development of improved plant varieties and increasing our understanding of the physiological or molecular mechanisms behind biological phenomena. The technique is now being applied to drought resistance in rice (Oryza sativa L.). Drought is important because a considerable proportion of the world rice area is not irrigated and can be prone to water deficit. A large number of people, particular some of the poorest rice farmers, stand to gain if new varieties which combine high yield and drought resistance can be developed. Rice should be particularly useful for the molecular genetic analysis of drought resistance because of its growing role as a model monocot species and the diversity of drought resistance mechanisms which are found in the germplasm. We briefly review the traits which might be considered important in improving drought resistance in rice, before explaining the molecular mapping approach. We review progress at locating quantitative trait loci (QTLs) for individual mechanisms of drought resistance in controlled environment conditions. This includes a detailed comparison of reported QTLs related to root morphological characters. The search for QTLs associated with field performance under drought stress is analysed and the problems associated with understanding the genetic control of a complex physical and physiological phenomenon under conditions of substantial environmental variation are highlighted. We emphasise that the use of near isogenic lines in overcoming some of the problems offers considerable promise for the future.
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  • 30
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    Genetic resources and crop evolution 46 (1999), S. 587-598 
    ISSN: 1573-5109
    Keywords: diversity ; genetic resources ; GIS ; Oryza sativa ; RAPD ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A diverse set of 115 rice varieties from Bangladesh was surveyed using 35 polymorphic RAPD (randomly amplified polymorphic DNA) markers and the genetic structure of this germplasm, encompassing the principal rice ecotypes of Bangladesh (aus, aman and boro), was determined using multivariate analysis. The level of genetic diversity was evaluated and compared with the levels of diversity found within other rice growing areas of the world. Geographical information systems analysis using Atlas-GIS was employed to analyse and present the geographic distribution of genetic diversity across Bangladesh, and cluster analysis was used to test the efficiency of selection of material for a core collection.
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  • 31
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    Agroforestry systems 47 (1999), S. 3-12 
    ISSN: 1572-9680
    Keywords: leguminous fallow ; nitrogen fixation ; soil fertility replenishment
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Improved fallows are the deliberate planting of fast-growing species — usually legumes — for rapid replenishment of soil fertility. Improved fallows are rapidly spreading in several regions of the tropics as a sensible way for in situ accumulation of large quantities of N in vegetation and soil, as well as for providing sustainability enhancing services. Research on improved fallows increased after the mid 1980s with the development of what is known as the second soil fertility paradigm, which is based on sustainability considerations. Many lessons have emerged from short-term improved fallows (〈5 years duration). These include the diversity of farm sizes where improved fallows are used, the advantage of sequential versus simultaneous systems, the utilization of dry seasons unfavorable for crop production, the comparative advantages of woody versus herbaceous leguminous fallows, the magnitude of N accumulation, the strategic use of N fertilizers, and the importance of P. Other key services provided by fallows include fuelwood production, recycling of nutrients besides N, provision of a C supply to soil microorganisms, weed suppression, Striga control, and improved soil water storage. Natural fallows of non-legume shrubs belonging to the Asteraceae family, collectively called ‘daisy fallows’, may provide lessons for the development of improved fallows. The maintenance of genetic diversity in fallows is paramount. The main limiting factor in Africa is clearly the supply of germplasm of improved fallow species. This must be overcome though large-scale seed orchards and nursery development before impact at the scale of millions of farmers can take place.
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  • 32
    ISSN: 1573-5036
    Keywords: Galega orientalis ; nitrogen fixation ; polyamines ; Rhizobium galegae ; ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plants of goat's rue (Galega orientalis) inoculated with Rhizobium galegae strain HAMBI 540 were grown in the presence of putrescine (Put), spermidine (Spd) or spermine (Spm), and several symbiotic characteristics were investigated to delineate the influence of polyamines (PA) on this nitrogen-fixing system. All three PA exerted a concentration-dependent effect on the nodule parameters tested. The increment of nodulation ability and nodule biomass accumulation was extreme (from 2.4- to 4.0-fold) when plants were subjected to 10 and 50 μM of various PA. However, at 100 μM a negative effect was observed. The acetylene-reduction activity of nodulated roots was increased also in response to treatment with the lower PA concentrations. The level of nitrogenase activity supported by succinate was significantly higher in bacteroids isolated from PA-treated nodules than in bacteroids from control nodules. The symbiotic parameters were also dependent on the type of PA used; the most effective being the diamine Put, while Spm showed a smaller physiological effect with respect to the others. Polyamines altered the ultrastructure of Galega nodule infected cells. After treatment with these substances, pronounced changes in the relative volume of the main components of infected cells and their compartments were observed. The significance of the structural observations and morphometric analyses, their relationship to differences in nitrogen fixation and possible modes of action are discussed.
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  • 33
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    Plant and soil 216 (1999), S. 147-153 
    ISSN: 1573-5036
    Keywords: NaCl ; Oryza sativa ; peroxidase ; root growth
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The changes in ionically bound peroxidase activity in roots of NaCl-stressed rice seedlings and their correlation with root growth were investigated. Increasing concentrations of NaCl from 50 to 150 mM progressively decreases root growth. The reduction of root growth by NaCl is closely correlated with the increase in ionically bound peroxidase activity. Since proline and ammonium accumulations are associated with root growth inhibition caused by NaCl, we determined the effects of proline or NH4Cl on root growth and ionically bound peroxidase activity in roots. External application of proline or NH4Cl markedly inhibited root growth and increased ionically bound peroxidase activity in roots of rice seedlings in the absence of NaCl. An increase in ionically bound peroxidase activity in roots preceded inhibition of root growth caused by NaCl, NH4Cl or proline. Mannitol inhibited root growth, but decreased rather than increased ionically bound peroxidase activity at the concentration iso-osmotic with NaCl. The inhibition of root growth and the increase in ionically bound peroxidase activity in roots by NaClis reversible and is associated with ionic rather than osmotic component.
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  • 34
    ISSN: 1573-5036
    Keywords: CO2 enrichment ; climate change ; dissolved organic nitrogen ; nitrogen cycle ; nitrogen fixation ; root exudate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract N-fixing trees facilitate the growth of neighboring trees of other species. These neighboring species benefit from the simple presence of the N fixation symbiosis in their surroundings. Because of this phenomenon, it has been hypothesized that a change in atmospheric CO2 concentration may alter the role of N-fixing trees in their environment. It is thought that the role of N-fixing trees in ecosystems of the future may be more important since they may help sustain growth increases due to increased CO2 concentration in nitrogen limited forests. We examined: (1) whether symbiotically fixed N was exuded from roots, (2) whether a doubled atmospheric CO2 concentration would result in increased organic N exudation from roots, and (3) whether increased temperature or N availability affected N exudation from roots. This study analyzed exudation of dissolved organic N from the roots of seedlings of the N-fixing tree Robinia pseudoacacia L. in a full factorial design with 2 CO2 (35.0 and 70.0 Pa) × 2 temperature (26 or 30 °C during the day) × 2 N fertilizer (0 and 10.0 mM N concentration) levels. Trees with no other source of N except N fixation exuded about 1% to 2% of the fixed N through their roots as dissolved organic N. Increased atmospheric CO2 concentrations did not, however, increase N exudation rates on a per gram belowground biomass basis. A 4 °C increase in temperature and N fertilization did, however, significantly increase N exudation rates. These results suggest that exudation of dissolved organic N from roots or nodules of N-fixing trees could be a significant, but minor, pathway of transferring N to neighboring plants in a much more rapid and direct way than cycling through death, decomposition and mineralization of plant residues. And, while exudation rates of dissolved organic N from roots were not significantly affected by atmospheric CO2 concentration, the previously observed ‘CO2 fertilization effect’ on N-fixing trees suggests that N exudation from roots could play a significant but minor role in sustaining increases in forest growth, and thus C storage, in a CO2 enriched atmosphere.
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  • 35
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    Nutrient cycling in agroecosystems 53 (1998), S. 71-81 
    ISSN: 1573-0867
    Keywords: fallow ; legumes ; nitrogen fixation ; rice ; weeds ; West Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Traditional upland rice-based cropping systems in West Africa rely on periods of fallow to restore soil fertility and prevent the build-up of insect pests and weeds. Demographic growth and increased demand for land is forcing many farmers to intensify their rice production systems. Declining fallow length and increasing number of crops before leaving the land to extended fallow result in a significant yield reduction. Promising cropping system alternatives include the use of site specific, weed-suppressing, multi-purpose cover legumes as short duration fallows. Constraints to rice production related to intensification were determined in 209 farmers' fields in four agro-ecological zones during 1994 and 1995. Nitrogen accumulation and weed suppression were evaluated in 54 legume accessions, grown for six months during the dry season, under a range of hydrological and soil conditions in 1994/95. Their effect on the yield of upland rice was determined in 1995. To increase benefits from improved fallow technology, the timing of legume establishment in relation to rice and the effect on crop and weed growth of removing, burning, mulching, or incorporating fallow residues prior to the rice crop were determined. Intensified land use resulted in a significant plot-level yield reduction that was highest in the derived savanna and the bimodal forest zones where it was associated with a doubling of the weed biomass in rice and a significant reduction in soil N supply. Legume fallows appear to offer the potential to sustain rice yields under intensified cropping. Legume biomass was in most instances significantly greater than in the weedy fallow control and several legume species suppressed weed growth. Nitrogen accumulation by legumes varied between 1–200 kg N ha-1 with 30–90% Ndfa. Rice grain yield following legume fallows increased by an average of 0.2 mg ha-1 or 29% above the weedy fallow control. Relay establishment substantially increased legume biomass. However, seeding of the legume at 28 days or earlier significantly reduced grain yield due to interspecific competition. Incorporating or mulching of fallow residues provided no significant yield advantage as compared to burning. Absolute effects varied as a function of site, legume species, and management practice.
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  • 36
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    Plant and soil 202 (1998), S. 41-47 
    ISSN: 1573-5036
    Keywords: Glycine max ; nitrogen fixation ; sulfur assimilation ; sulfur remobilization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract During pod filling, a grain legume remobilizes vegetative nitrogen and sulfur to its developing fruit. This study was conducted to determine whether different nitrogen sources affected N and S assimilation and remobilization during pod filling. Well-nodulated plants fed 1.0 mM KNO3, 0.5 mM urea, or 2.5 mM urea assimilated 0%, 37%, or 114% more N, respectively, and 25%, 46%, or 56% more S, respectively, than did the average non-nodulated control plant fed 5.0 mM KNO3. Thus, N source during pod filling greatly affected both N and S assimilation. Depending upon N source, plant N concentration during pod filling decreased from 2.96% to between 1.36% and 1.82%. Non-nodulated control plants fed 5.0 mM KNO3 had the highest residual N at harvest. During the same treatments, plant S concentration decreased from 0.246% to a relatively uniform 0.215%. Thus, during pod filling, vegetative N was seemingly remobilized more efficiently (38–54%) than was S (13%). N source also affected seed yield and seed quality. Non-nodulated control plants fed 5.0 mM KNO3 produced the lowest yield (21.1 g seeds plant-1), whereas well nodulated plants fed 1.0 mM KNO3, 0.5 mM urea, or 2.5 mM urea produced yields of 26.2 g, 31.8 g, and 36.7 g seeds plant-1, respectively. Non-nodulated plants fed 2.5 mM urea yielded 28.6 g of seeds plant-1. Seed N concentrations of non-nodulated plants and nodulated plants fed 2.5 mM urea were high, 6.30% and 6.11% N, respectively, whereas their seed S concentrations were low, 0.348% and 0.330% S, respectively. N sources that produced both a relatively high seed yield and seed N concentration (i.e., a relatively high total seed N plant-1) produced a proportionately smaller increase in total seed sulfur. Consequently, seed quality, as judged solely by seed S concentration, was lowered.
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  • 37
    ISSN: 1573-5036
    Keywords: Acetobacter diazotrophicus ; endophytic diazotrophic bacteria ; micropropagated plants ; nitrogen fixation ; sugar cane ; tissue culture
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Micropropagated plantlets of sugar cane were inoculated with the N2-fixing bacterium Acetobacter diazotrophicus. Various modifications on the basic plant culture medium MS were made for the plant/bacteria association. The protocol required the inoculation of the bacteria at the end of the rooting period in a medium without hormones or vitamins, and with the concentration of sugar and mineral nutrients reduced by a factor of 10. Individual plants were inoculated with A. diazotrophicus and maintained under the appropriate light and temperature condition used for micropropagation up to 7 days. The system favored the infection and the establishment of the bacteria within the plant tissue. Bacteria colonized the plant tissue and accumulated in inter-cellular cavities and the region of lateral root emergence and also colonizes the xylem vessels. The inoculated plantlets were subsequently transferred to the acclimatization phase and after 30 days it was possible to isolate the bacteria from plant tissue. This protocol permitted studies of infection and comparison among strains.
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  • 38
    ISSN: 1573-5036
    Keywords: growth parameters ; methane flux ; N-fertilization ; Oryza sativa ; root porosity ; urea
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Influence of urea application on growth parameters (shoot height, and weight, root volume, weight and porosity; number of tillers; grain yield) and their relationship with methane (CH4) flux was investigated in Oryza sativa (var. Pant Dhan-4) under flooded soil condition. The study design consisted of (a) fertilized vegetated, (b) control vegetated, (c) fertilized bare, and (d) control bare plots. Crop growth and CH4 flux measurements were conducted from 9 to 115 days of rice transplanting at regular intervals of 10 days. Results showed that there were significant differences due to days (dates of measurement) and fertilization in all growth parameters except shoot height. Day × fertilization interaction was significant for all growth parameters. CH4 fluxes ranged from 0.4 to 20.2, 0.1 to 11.9, 0.09 to 2.2 and 0.004 to 1.5 mg m-2 h-1 under treatments (a), (b), (c) and (d), respectively. Maximum CH4 flux was recorded at the flowering stage. All the growth parameters, including number of tillers, showed strong positive relationship with total methane flux. Root porosity was also strongly correlated with total CH4 emission. It was concluded that CH4 emission was substantially influenced by crop phenology and growth, and fertilization. The study emphasizes the substrate production and conduit effects of rice plants on CH4 flux.
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  • 39
    ISSN: 1573-5036
    Keywords: glutamine-synthetase ; leghaemoglobin ; nitrogen fixation ; nodulin ; PEP-carboxylase ; Phaseolus vulgaris ; Rhizobium tropici
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The metabolic activities of root nodules formed by Rhizobium tropici UM1899 were measured to test for the effects of geographical origin of the host bean (Phaseolus vulgaris L.) plant. Under increasing levels of N (0 to 24 mM of NH4NO3), the optimum condition for nitrogen fixation based on nitrogenase activity and allantoin concentration, was obtained between 2 and 4 mM N. Cultivars, including wild accessions from the two major domestication centers in America (Middle America and Andes), were then grown under aseptic conditions with 2 mM NH4NO3 and the rhizobial inoculant. Plant nodulins [leghaemoglobin (Lb), phosphoenolypyruvate carboxylase (PEPC) and glutamine synthetase (GS)], bacterial nitrogenase (NIF) activities as well as allantoin (ALA) concentration in the xylem sap, were assayed in flowering plants. Lb, PEPC, NIF activities and ALA concentrations were strongly affected by cultivar and by the center of origin. GS activity did not vary significantly with either cultivar or center of origin. LB, NIF and ALA were directly related to plant growth and offer opportunities to select for efficient N2-fixing symbioses. There were slight increases in nodulin activities of the domesticated cultivars, but the overall low variability within this material relative to landraces suggests that diversity for biological nitrogen fixation was reduced by domestication.
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  • 40
    ISSN: 1573-5060
    Keywords: unpollinated ovary culture ; callus induction ; plant regeneration ; chilling pretreatment ; development stage ; medium composition ; rice ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A simple and efficient technique for in vitro unpollinated ovary culture in rice which is also applicable for indica genotypes was developed for breeding and genetic studies. Sampling explants at the auricle distance of 7–12 cm between the two uppermost leaves of a tiller, providing a chilling pretreatment and ovaries with 1/3 of the hulls intact gave optimum response to culture. For callus induction with the spontaneous breaking of ovaries, N6 media supplemented with NAA (2 mg/l) and DMSO (0.6–0.8%) gave a mean PCI value of 3.8% and range of 0.8–12.5% among genotypes. Media combining 2,4,5-T or 2,4-D with NAA in N6 medium also has reasonably good callus induction. For calli induced inside, 2,4-D (0.2–0.5 mg/l), NAA (2 mg/l) and KT (1 mg/l) contained media were superior. The maximum green plant regeneration (PPR) of 77.3% was found with the medium containing NAA 0.25 mg/l, IAA 0.5 mg/l and KT 2.0 mg/l. Significant genotype, medium and their interaction effects for per cent ovary survival and callus induction were observed.
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  • 41
    ISSN: 1573-5036
    Keywords: agar ; agarose ; gels ; mechanical impedance ; Oryza sativa ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Agar and agarose gels were evaluated as systems to mechanically impede roots of rice (Oryza sativa L.). Two-layer gels were used so that seedlings established in a layer of weak gel (0.35% weight/volume) and then grew downwards to encounter a treatment gel of up to 5.0% (w/v). Agarose gels were stronger than agar gels of the same concentration, reaching a maximum penetrometer resistance of 1.2 MPa at a concentration of 5.0%, compared to 0.3 MPa with agar. The 5.0% agar gel stimulated elongation of the seminal axis by 40% in seedlings of variety TN1 (compared with elongation in the 0.2% gel), but decreased it by 15% in the variety Lac 23. Although increasing agarose concentration decreased seminal axis elongation in both varieties, the seminal axis did not reach the lower layer of treatment gel when the concentration of the treatment gel was greater than 2.0%. The decreased root elongation was therefore a non-mechanical inhibition. In experiments conducted using a different batch of agarose, these inhibitory effects were not seen and strong agarose gels stimulated seminal axis elongation. It was concluded that the agar and agarose gel systems studied were unsuitable for studying the effect of mechanical impedance on the elongation of rice roots and that great care should be taken in interpreting the results of experiments using gels as a growth medium.
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  • 42
    ISSN: 1573-5036
    Keywords: celB ; gusA ; lacZ ; landrace ; lime ; molybdenum ; nitrogen fixation ; Phaseolus vulgaris ; Rhizobium tropici ; X-gal ; X-gluc
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Poor bean yields in the Cunha region of the Mata Atlântica ecosystem in the state of São Paulo, Brazil, are associated with low agronomic inputs, plant disease, and soil erosion. To identify sustainable farming practices that increase production and maximize biological N2 fixation (BNF), the effects of soil fertility and plant cultivar on seed yield and root nodule formation were measured under standard agronomic practices. Results from 16 sites showed that fertilizing with lime and molybdenum increased seed yields to 370% for the landrace Serro Azul. In addition to increased yields, plants grown with fertilizer had more nodules. Marked strains of Rhizobium tropici were tested under controlled environments. An indicator strain of Rhizobium containing the gusA marker gene was used. Our results verify that the indicator strain CM-255 GusA+Hup+ had a high capacity to associate with the five bean varieties tested. Fertilization with P, K, S + micronutrients and liming were essential for better nodulation by the indicator strain. Under low fertility conditions, the landrace variety Serro Azul was poorly nodulated, when associated with native strains or with the indicator strain. However, under better soil fertility conditions, nodulation of Serro Azul by the marked Rhizobium strain was increased. The commercial variety Carioca 80SH showed no increase in nodulation (nodule number).
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  • 43
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    Genetic resources and crop evolution 45 (1998), S. 399-406 
    ISSN: 1573-5109
    Keywords: internal transcribed spacer sequences ; nuclear ribosomal RNA genes ; molecular phylogeny ; Potamophila parviflora ; Oryza sativa ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Potamophila parviflora is a wild relative of rice from Eastern Australia. The species was found in the Richmond, Clarence, Macleay and Hastings River systems of northern New South Wales. Existing populations had wider leaves (10–15 mM) than those previously reported (4–6 mM). This species and North American wild rice, Zizania palustris were investigated as genetic resource for rice improvement. Both species, Potamophila , and Zizania , occur in colder climates than rice (Oryza sativa). Sequencing of the ITS1 of the ribosomal genes of these two species indicated that Zizania and Potamophila were more closely related to each other than either was to Oryza sativa. Potamophila has a similar number of chromosomes (n=12) and a greater sequence homology to rice and may thus be a better source of useful genes for rice improvement.
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  • 44
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    Plant growth regulation 26 (1998), S. 63-66 
    ISSN: 1573-5087
    Keywords: ammonium ; calcium ; leaf senescence ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The possible involvement of calcium in the regulation of ammonium-promoted senescence of detached rice leaves was investigated. Calcium effectively reduced ammonium-promoted senescence of detached rice leaves. The effect of ammonium on the senescence was also significantly reduced by the calcium ionophore A23187. Ammonium-promoted senescence of detached rice leaves may be mediated through blocking the entrance of calcium ions into the cytosol.
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  • 45
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    Agroforestry systems 42 (1998), S. 107-120 
    ISSN: 1572-9680
    Keywords: erosion ; Gliricidia sepium ; Oryza sativa ; Paspalum conjugatum ; Penisetum purpureum ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Farming systems that minimize the rate of soil degradation and optimize food crop yields are needed to sustain soil productivity on sloping, acid, infertile soils in the humid tropics. Research was conducted on two Oxisols with slopes ranging from 22 to 30% to evaluate the performance of several contour hedgerow systems, with and without the addition of 60 kg N ha−1 per crop, on rice (Oryza sativa) and maize (Zea mays L.) production. Contour hedgerows were double rows of the tree legume Gliricidia sepium (G); Gliricidia and the native grass Paspalum conjugatum (GPas); Gliricidia and an exotic fodder grass Penisetum purpureum (GPen); double rows of Penisetum (Pen); and a conventional open field (C) farming system without hedgerows. Gliricidia prunings and all crop residues were applied to the soil surface in the alleys, but Penisetum was harvested. Food crop yields in all hedgerow treatments tended to be less than the Control for the first two years, presumably due to the displacement of land planted to the food crop. In the third and the fourth years, the rice and maize yields of Treatments G and GPas exceeded the Control, most consistently when N was not applied. Penisetum reduced food crop yields regardless of N application presumably due to nutrient removal in the fodder. The results indicate that Gliricidia in a contour hedgerow increases food crop yield on strongly acid Oxisols by recycling nutrients and partially supplementing the N demand by the food crops.
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  • 46
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    Plant growth regulation 24 (1998), S. 17-21 
    ISSN: 1573-5087
    Keywords: leaf senescence ; lipid peroxidation ; methyl jasmonate ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Lipid peroxidation in relation to MJ-promoted senescence of detached rice leaves was investigated. Lipid peroxidation seems to be involved in the regulation of MJ-promoted senescence of detached rice leaves. This conclusion was based on the observations that (a) methyl jasmonate, which was found to promote senescence, increases the level of lipid peroxidation, (b) linolenic and linoleic acid, precursors of the biosynthesis of jasmonic acid, promoted senescence and increased lipid peroxidation level, (c) benzyladenine, a synthetic cytokinin, counteracted MJ-promoted senescence and reduced the increase in lipid peroxidation level, (d) calcium chloride effectively reduced MJ-promoted senescence and at the same time reduced MJ-promoted lipid peroxidation. Free radical scavengers (reduced glutathione and sodium benzoate) and an iron chelator (2, 2′-bipyridine) prevented MJ-promoted senescence, suggesting that lipid peroxidation induced by MJ is mediated through free radicals.
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  • 47
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    Euphytica 102 (1998), S. 151-161 
    ISSN: 1573-5060
    Keywords: Oryza sativa ; head rice ; seeding date ; rice ; rough rice yield ; stability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The rice (Oryza sativa L.) crop in Arkansas is seeded from late March through early June each year. Farmers need new rice cultivars that not only produce both high rough rice yields and high head rice across this range of seeding dates but do so consistently. Thus, a seeding date study was conducted during 1994 and 1995 at Stuttgart, Arkansas, to study seeding date effects on rough rice yield and head rice and selection for stability. Fourteen rice cultivars were seeded at five dates ranging from late March through mid-June. Kang's yield-stability statistic was used to select cultivars for both high rough rice yields and high head rice as well as stability for both traits. Plant stands from March seedings of each year were significantly lower than for the later seeding dates. Maturity (days to 50 percent heading) was extended at the early seeding dates. Some rice cultivars, such as ‘LaGrue’, had lower and more variable head rice when seeded early. In the June seeding dates each year, ‘Kaybonnet’ produced rough rice yields that were more consistent with yields when planted at the earlier planting dates. ‘Bengal’, ‘Cypress’, ‘Kaybonnet’, and ‘Newbonnet’ were cultivars selected by Kang's stability statistic, which was targeted to select cultivars with stable, high rough rice yields and stable, high head rice. The validity of using Kang's yield-stability statistic for cultivar selection is also evident empirically by the adaptation and wide use of these four cultivars by southern U.S. rice producers. These results indicate that seeding date studies and stability analyses would be useful tools for rice breeders to identify cultivars that will be readily adapted and grown by rice producers.
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  • 48
    ISSN: 1573-5060
    Keywords: inbred lines ; nitrate uptake ; nitrogen fixation ; nodules ; Trifolium repens ; white clover
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract N2 fixation, nitrate uptake, and tissue N levels werecompared in four novel self-fertile inbred lines (referred to as A, B, C andD) of white clover (Trifolium repens L.) believed to differ markedly intheir nitrogen relations. Plants were inoculated with a mixture of Rhizobiumstrains and grown in flowing nutrient solutions without mineral N for 18 dprior to supplying half the plants with 20 µM $$NO_3^ - $$ over a 36 d treatment period. Net uptakeof $$NO_3^ - $$ was measured automatically on a dailybasis. The remaining plants constituted ‘controls’ solely dependent uponN2 fixation for acquisition of N. Total uptake of $$NO_3^ - $$ over 36 days was 27.4 (A), 23.8 (B), 13.8(C) and 30.1 (D) mmol N/plant, compared with N2 fixation of7.2 (A), 16.9 (B), 26.2 (C) and 6.2 (D) mmol N/plant by the $$NO_3^ - $$ -fed lines. Total N2 fixationby corresponding ‘control’ plants was 15.6 (A), 35.6 (B), 35.3 (C) and 2.2(D) mmol N/plant. Line D plants exhibited a 3:1 segregation with respect toeither ‘nil’ or ‘partially impaired’ N2 fixation; thecorresponding ratio for line A was 1:3. Line C plants had a ‘low $$NO_3^ - $$ uptake’ phenotype characterised by specific $$NO_3^ - $$ uptake rates approximately half those ofthe other lines, higher N2 fixation in the presence of $$NO_3^ - $$ , and low leaf + petiole concentrations of $$NO_3^ - $$ , although concentrations of $$NO_3^ - $$ in stolon and root fractions were similarin all lines. These inbred lines provide a tool for (1) the analysis of thegenetic and physiological basis of variation in the efficacy with which $$NO_3^ - $$ uptake down-regulates N2fixation, and (2) testing ecological hypotheses for temporal and spatialvariation in clover/grass coexistence in pastures.
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  • 49
    ISSN: 1573-5060
    Keywords: heterosis ; heterosis × environment interaction ; Oryza sativa ; rice ; standard heterosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Moderate to high heterosis for yield and ten related characters was studied in 45 crosses involving six indica (I) and four tropical japonica (J) varieties of rice under three (E1-optimum sowing and high fertility, E2-both optimum sowing and fertility and E3- late sowing and high fertility) environments. Trends of magnitude of heterosis for grain yield and plant height were I/J 〉 I/I 〉 J/J and for days to 50% flowering I/J 〉 J/J 〉 I/I hybrids. Estimates of standard heterosis (%) for grain yield were –64.5 to 146.1 in E1, –70.4 to 82.2 in E2 and –67.2 to 63.8 in E3. Environment E1 seemed to be more favorable for higher heterosis expression than others. Higher heterosis in yield also accompanied heterosis in panicle number, dry matter and spikelet and grain number per panicle. Most estimates for days to flower were negative. Heterotic I/J hybrids also recorded maximum heterosis for earliness. Moderate to low standard heterosis for plant height across environments (2.0 to 13.7%) was recorded. Hybrids were identified in specific environments for direct exploitation in hybrid breeding. Hybrids B4116 / Sarjoo 52, B4122 / Pant Dhan 4 and B4122 / Narendera 359 were more stable than others over three environments.
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  • 50
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    Plant and soil 198 (1998), S. 63-69 
    ISSN: 1573-5036
    Keywords: allocation ; Alnus ; nitrogen ; nitrogen fixation ; resorption ; translocation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Red alder (Alnus rubra Bong.) trees were labeled with15 NO- 3 or15 NH+ 4 using the stem-injection method. Leaves were sampled 3 and 15 months subsequent to injection within several crown positions, including top, bottom, proximal, medial, and distal. Stem injection of both15 NH+ 4 and15 NO- 3 at levels approaching 1% of crown N effectively labeled red alder trees. Although more variable, 15NO- 3 may have been more efficient in initial labeling. The distribution of 15N in the crown was uniform 3 months after labeling, but was diluted in the distal and top positions by the following year. In both years there was a clear increase in total N concentration toward the periphery of the tree. This increase became more pronounced with increasing crown size and crown closure. Crown position with respect to light availability may be the most important determinant in N allocation in red alder foliage.
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  • 51
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    Plant growth regulation 25 (1998), S. 165-169 
    ISSN: 1573-5087
    Keywords: ammonium ; leaf senescence ; Oryza sativa ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ammonium accumulation in relation to water stress-promoted senescence of detached rice leaves was investigated. The effect of water stress on the senescence of detached rice leaves is associated with the accumulation of ammonium. The accumulation of ammonium in detached rice leaves by water stress is attributed to a decrease in glutamine synthetase activity. Ammonium accumulation in detached rice leaves, induced by water stress, was accompanied by an increase in tissue sensitivity to ethylene which, in turn, accelerated leaf senescence.
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  • 52
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    Plant growth regulation 25 (1998), S. 11-15 
    ISSN: 1573-5087
    Keywords: ascorbate peroxidase ; glutathione reductase ; Oryza sativa ; peroxidase ; senescence ; superoxide dismutase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The possible role of H2O2 metabolism on light-regulated senescence of detached rice leaves was investigated. Light retards senescence but at the same time accumulates more H2O2. Light treatment resulted in an increase in malondialdehyde level in detached rice leaves but no membrane leakage was observed in light-treated detached leaves. It seems that there was no direct relationship between lipid peroxidation and deterioration in membrane integrity. The results obtained suggest that retardation of senescence by light is closely related to high activities of superoxide dismutase and ascorbate peroxidase.
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  • 53
    ISSN: 1432-0789
    Keywords: Cyanobacteria ; Soil inoculation N ; transformation ; Inorganic N ; Easily oxidizable N ; Hydrolysable N ; Non-hydrolysable N ; Wetland rice Farmyard manure ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A field experiment was conducted with wetland rice (Oryza sativa cv. IR-36) in a sandy clay loam soil (Entisol) to study the effect of inoculation with a soil-based mixed culture of four diazotrophic cyanobacteria,Aulosira fertilissima, Nostoc muscorum, N. commune andAnabaena spp., on the N-flux in inorganic NH4 ++NO3 −+ NO2 −), easily oxidizable, hydrolysable and non-hydrolysable forms of N in soil during vegetative growth periods of the crop. Effects on grain and straw yield and N uptake by the crop were estimated. The effects of applying urea N and N as organic sources, viz.Sesbania aculeata, Neem (Azardirachta indica) cake and FYM, each at the rate of 40 kg N ha−1, to the soil were also evaluated. Inoculation significantly increased the release of inorganic N, evidenced by its increased concentrations either in soil or in soil solution. However, such increases rarely exceeded even 4% of total N gained in different froms in the soil system by inoculation during the vegetative growth stages of the rice plant, when the nutritional requirement of the plants is at a maximum. Most of the N2 fixed by cyanobacteria remained in the soil as the hydrolysable form (about 85%) during this period. Inoculation caused an insignificant increase in grain (8%) and straw (11%) yield, which was, however, accompanied by a significant increase in N uptake by the grain (30%) and an increase in total uptake of 15.3 kg N ha 1. Such beneficial effects of inoculation varied in magnitude with the application of organic sources, with farmyard manure (FYM) being the most effective. Application of urea N, on the other hand, markedly reduced such an effect.
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  • 54
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    Biology and fertility of soils 25 (1997), S. 285-289 
    ISSN: 1432-0789
    Keywords: Key words Methane emission ; Wetland soils ; Greenhouse gases ; Inceptisol ; Vertisol ; Rice ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In a greenhouse study, methane emissions were measured from two diverse Indian rice-growing soils planted to five rice cultivars under similar water regimes, fertilizer applications and environmental conditions. Significant variations were observed in methane emitted from soils growing different cultivars. Total methane emission varied between 8.04 and 20.92gm–2 from IARI soil (Inceptisol) and between 1.47 and 10.91gm–2 from Raipur soil (Vertisol) planted to rice. In all the cultivars, emissions from IARI soil were higher than from Raipur soil. The first methane flux peak was noticed during the reproductive phase and the second peak coincided with the grain-ripening stage of the rice cultivars.
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  • 55
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    Biology and fertility of soils 24 (1997), S. 70-75 
    ISSN: 1432-0789
    Keywords: Flooded rice soil ; Soil-trapped CH4 and C02 ; δ13C values of CH4 and C02 ; Greenhouse effect ; CO2 flux ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Pot experiments were conducted to monitor the changes in compositions and δ13C values of soil-trapped CH4 and C02 in flooded rice soil with and without rice plants or rice straw. Incorporation of rice straw increased the concentration of CH4 and C02 accumulated in soil, and the quantities of emitted CH4 to the atmosphere. Rice plants reduced the concentration of soil-trapped CH4 and CO2, and the decreased portion of CH4 was replaced by N2. A significantly negative correlation was found between soil-trapped CH4 and N2. The presence of rice plants increased the δ13C values of CH4. The δ13C values of CH4 tended to increase toward the end of the growing season and were positively correlated with concentration of soil-trapped CH4. A positive correlation between δ13C values of CH4 and C02, and between the δ13C values of CH4 and its concentration, were observed. The CH4 in the rice stems was 4–14% enriched in13C relative to soil-trapped CH4. In contrast, CO2 in rice plant stems was 1–9% lighter in13C relative to soil-trapped C02. These results are discussed in relation to the precursor pools and pathways of methanogenesis.
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  • 56
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    Biology and fertility of soils 24 (1997), S. 261-265 
    ISSN: 1432-0789
    Keywords: Key words Methane ; Wetland rice soils ; Oryza sativa ; Methane oxidation ; Acetylene Propylene oxide ; Methanotrophs ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Acetylene up to 500 μl l–1 did not affect methane formation in anoxic soil up to 12 h, but further incubation for 1 week showed strong inhibition of methanogenesis. To ascertain the extent of the oxidation of methane produced from rice-planted pots, the effect of acetylene on methane emission was studied. Two rice varieties (Toyohatamochi and Yamahikari) were grown in a greenhouse in submerged soil in pots. At about maximum tillering, heading, and grain-forming stages, methane fluxes were measured. Flux measurement was performed for 3 h from 6 pm, then acetylene at 100 μl l–1 was added to some of the pots. At 6 a.m. the following day, methane fluxes were again measured for 3 h. Only at maximum tillering stage of the variety Toyohatamochi was a significant increase (1.4 times) in methane flux caused by acetylene observed, whereas in the other treatments no significant increase in methane fluxes by acetylene could be defected. To ascertain the activity of methane monooxygenase (MMO), propylene oxide (PPO) formation from propylene was measured with excised roots and a basal portion of stems of the rice plants grown on the submerged soil. A level of 0.1–0.2 μmol PPO h–1 plant–1 was recorded. The roots showed the highest PPO formation per gram dry matter, followed by basal stems. Methane oxidation was roughly proportional to PPO formation. Soluble MMO-positive methanotroph populations were measured by plate counts. The number of colony-forming units per gram dry matter was 106–105 in roots, and 104–103 in basal stems. These results indicate the possibility of methane oxidation in association with wetland rice plants.
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  • 57
    ISSN: 1572-9788
    Keywords: diversity ; genetic mapping ; Oryza sativa ; RAPDs ; rice ; inter-simple sequence repeats
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Genetic variation between samples of Oryza sativa from 19 localities in Bangladesh and Bhutan was assessed using two PCR-based molecular marker systems: RAPD (random amplification of polymorphic DNA) and ISSR-PCR (inter-simple sequence repeat polymerase chain reaction). Employing RAPD, a set of 14 decanucleotides of arbitrary sequence directed the amplification of 94 reproducible marker bands, 47 (50%) of which were polymorphic. In addition, a set of 9 ISSR primers were used to direct amplification of 71 PCR products, 40 (56%) of which were polymorphic. Multivariate analyses of the two PCR-based molecular marker data sets provided evidence that the patterns of variation correspond with the classification described by Glaszmann [9] using isozyme analysis. Subtle differences in the relationships revealed between rice groups using the two types of PCR-based marker led to investigations of their map positions using an intraspecific doubled haploid mapping population. The observation that the chromosomal locations of markers can influence diversity assessments is presented and the significance of this is discussed.
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  • 58
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    European journal of plant pathology 103 (1997), S. 747-750 
    ISSN: 1573-8469
    Keywords: Appressoria ; fungitoxicity ; Magnaporthe grisea ; Oryza sativa ; partial resistance
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    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 59
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    Plant and soil 189 (1997), S. 181-188 
    ISSN: 1573-5036
    Keywords: Bradyrhizobium ; legume ; nitrogen fixation ; soybean ; symbiosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Several genes that restrict nodulation with specific Bradyrhizobiumstrains are known in Glycine max (soybean), and a similar system of nodulation restriction has recently been discovered in the related North American legume Amphicarpaea bracteata. We analyzed how nodulation-restrictive genotypes of each plant interacted with Bradyrhizobium strains sampled from the other host species. Ten bacterial isolates from A. bracteata that nodulated differentially with genotypes of their homologous host legume showed uniform responses to two soybean isogenic lines that differed at the Rj4 locus controlling nodulation restriction: all isolates formed nodules of normal size and morphology on both isolines. However, little or no nitrogen fixation occurred in any of these symbioses. A. bracteata genotypes that displayed broad vs. restricted symbiotic phenotypes toward naturally-associated bradyrhizobia were also tested with two bacterial isolates from soybean (USDA 76 and USDA 123). Both isolates formed nodules and fixed nitrogen in association with both A. bracteata genotypes. However, symbiotic effectiveness (as measured by acetylene reduction assays) was normal only for the combination of USDA 76 with the restrictive A. bracteata genotype. Overall, these results indicate that plant genes that restrict nodulation by certain naturally-associated bradyrhizobia do not confer comparable specificity when plants interact with bacteria from another related legume species.
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    Plant and soil 189 (1997), S. 221-229 
    ISSN: 1573-5036
    Keywords: azide resistance ; nitrogen fixation ; phenethyl alcohol ; t Rhizobium loti ; TMPD-oxidase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Azide-resistant (AzR) mutants of Rhizobium loti strain NZP2037 were isolated. Mutations conferring azide resistance (azi) appeared at a frequency of 0.5 × 10-7. Nine AzR mutants of R. loti were characterised for their symbiotic behaviour with Lotus pedunculatus plants. In comparison to the wild type parent strain, AzR mutants exhibited either similar or higher symbiotic effectiveness. The azi mutations which enhanced nitrogen fixation as well as improving shoot dry weight of the inoculated plants also increased nodulation. Unlike several azi mutations in Escherichia coli, these azi mutations did not alter sensitivity of R. loti to phenethyl alcohol. One of the AzR mutants exhibited higher micro-aerobic, N′, N′, N′, N′-tetramethyl-p-phenylenediamine (TMPD) oxidase activity.
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  • 61
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    Plant and soil 189 (1997), S. 205-211 
    ISSN: 1573-5036
    Keywords: amelioration ; coastal salinity ; halotolerant cyanobacteria ; “Kharland” soils ; nitrogen fixation ; soil reclamation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A brackish-water, nitrogen-fixing cyanobacterium, Anabaena torulosa, could successfully grow and fix nitrogen on moderately saline “Kharland” soils (soil conductivity 5 to 8.50 dS m-1), typical of Indian coastline. During five weeks of growth under laboratory as well as field conditions, the cyanobacterium exhibited high rates of nitrogen fixation and substantially enriched the nitrogen status of saline soils (43-76%), although the fixed nitrogen remained confined to the cyanobacterial biomass. Most (〉90%) of the cell-bound Na+ remained extracellularly trapped in the mucopolysaccharide sheath of A. torulosa; traces of the cation that permeated cyanobacterial cells were found to exist in an osmotically active, free state. No evidence was found for the incorporation of Na+ into any biomolecule, especialty proteins or carbohydrates. Therefore, permanent removal of Na+ from saline soils using cyanobacteria may not be possible, since Na+ is released back into the soil subsequent to the death and decay of cyanobacteria. Removal of top soil containing cyanobacterial mats significantly decreased the soil salinity (between 26-38%). But such a practice removes all the fixed nitrogen and carbon and also does not seem feasible on a large scale. Amelioration of soil salinity by simultaneous application of A. torulosa during crop growth seems to be an attractive possibility, especially since it can also supplement the nitrogen requirement of the crop.
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  • 62
    ISSN: 1573-5036
    Keywords: ammonium ; Azotobacter ; diazotroph ; glutamine synthetase ; NifA ; nitrogen fixation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Strategies considered and studied for achieving ammonium excretion in nitrogen fixing bacteria include 1) inhibition of ammonium assimilation and 2) interference with the mechanisms by which ammonium inhibits either nitrogenase synthesis or activity. These aspects of nitrogen fixation have been best studied in diazotrophic Proteobacteria and Cyanobacteria and those of the former are reviewed in this paper. Ammonium assimilation by glutamine synthetase (GS) can be diminished or prevented by treatment of bacteria with chemicals that inhibit GS activity and in some diazotrophs, such treatment results in excretion of up to 15mM ammonium into liquid growth medium. Also, mutants with altered GS activity, isolated by selection for resistance to GS inhibitors, often excrete ammonium. In Proteobacteria, ammonium inhibits nitrogenase activity and/or synthesis, the latter by preventing activity or expression of NifA, a transcriptional activator required for expression of other nif genes. In Azotobacter vinelandii, ammonium inhibits NifA activity but not its synthesis; NifL mediates this effect by interacting directly with NifA causing its inactivation. In nifL insertion mutants, NifA is constitutively active and up to 10 mM ammonium is excreted during nitrogen fixation. GlnD insertion/deletion mutations are unable to be stably maintained in A. vinelandii wild type but are stable and viable in a mutant that produces constitutively active GS (cannot be adenylylated). This confirms the hypothesis that GlnD is required for activity of GS, an essential enzyme in A. vinelandii. In addition, the stable glnD mutants are Nif, supporting also the previous conclusion that GlnD is involved in mediating NifL/NifA interaction. Mechanisms of inhibition of synthesis or activity of NifA by ammonium in other diazotrophs are discussed and compared.
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  • 63
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    Euphytica 95 (1997), S. 45-48 
    ISSN: 1573-5060
    Keywords: Oryza sativa ; non-allelic ; segregation ; semidwarfism ; sd1 gene ; dwarf ; mutations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The mode of inheritance of five semidwarf (SD) mutants and allelic relationship with DGWG (sd1) locus was studied. The five SD mutants viz., Basmati 370 (SD1), Basmati 370 (SD2), Basmati 370 (SD3), TCA 2 (SD) and TCA P2-5 (SD) when crossed with their tall parents exhibited monogenic inheritance of 3 tall: 1 semidwarf in the F2 progenies. The SD mutants were also crossed with semidwarf varieties (DGWG and Bala) possessing sd1 gene. Crosses between Basmati 370 (SD1) × Bala, Basmati 370 (SD3) × Bala and TCA 2 (SD) × DGWG produced tall F1 hybrids and in F2 generation, modified dihybrid ratios (9 : 6 : 1 and 9 : 7) were observed indicating that the mutants Basmati 370 (SD1), Basmati 370 (SD3) and TCA 2 (SD) are non-allelic to sd1 gene. Whereas, the mutants Basmati 370 (SD2) and TCA P2-5 (SD) when crossed with Bala produced semidwarf F1 hybrids and in F2 generation, segregation for plant height was not observed indicating that these mutants are allelic to sd1 gene. The three non-allelic SD mutants identified in the present study can be used in rice breeding as alternative gene sources for semidwarfism.
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  • 64
    ISSN: 1573-5036
    Keywords: gibberellic acid ; Glycine max ; grain yield ; nitrogen fixation ; protein yield ; short season
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In short-season soybean production areas, low soil temperature is the major factor limiting soybean establishment, nodulation and nitrogen fixation. Gibberellic acid (GA) pretreatment of crop seeds can overcome low soil temperature inhibition of seed germination and seedling development. However, previous studies have found that the application of GAs decreased legume nodulation and nitrogen fixation under optimal growth conditions. A field experiment was conducted under short season conditions in eastern Canada to determine whether the application of GA3 to soybean seed could accelerate germination, and increase plant nodulation and nitrogen fixation. The results indicated that GA3 application accelerated seedling emergence but decreased plant nodulation and nitrogen accumulation at early plant growth stages. However, these initial negative effects were overcome as the plants developed. Gibberellic acid applied to soybean seed at the time of planting did not influence final grain and protein yield.
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  • 65
    ISSN: 1573-5036
    Keywords: acetylene reduction ; acetylene-induced decline ; argon-induced decline ; actinorhizal plants ; Elaeagnus ; Frankia ; nitrogen fixation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The rate of C2H2 reduction by nodulated seedlings of Elaeagnus angustifolia (Russian olive) was followed as a function of time. Our goals were to: 1) determine whether there is an C2H2-induced decline in nitrogenase activity; and 2) investigate the mechanism of any decline. We found a peak rate of C2H2 reduction at 1.5 min after the introduction of C2H2 that was followed by a rapid decline in activity to 56% of the peak value. After the decline there was a partial recovery to 67% of the peak value at 60 min. When the pO2 was decreased during the decline there was no significant effect (p≤0.05) on nitrogenase activity. When the C2H2 reduction assay was preceded by an incubation in a gas mixture (20 kPa O2) with Ar substituted for N2, there was little decline in nitrogenase activity as a function of time, but the rate of C2H2 reduction per gram nodule was reduced by approximately 50%. From these results we conclude that t Elaeagnus angustifolia exhibits a pronounced C2H2-induced decline and consequently the initial peak rate C2H2 reduction must be determined to obtain a valid measure of nitrogenase activity. We further suggest that cessation of NH3 formation initiates the decline and that the decline is not caused by a change in nodule permeability to gases.
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  • 66
    ISSN: 1573-5036
    Keywords: Bradyrhizobium jopanicum ; genistein ; Glycine max ; low soil temperature ; nitrogen fixation ; nodulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In the soybean (Glycine max. (L.) Merr)– Bradyrhizobium japonicum symbiosis, suboptimal root zone temperatures (RZTs) slow nodule development by disruption of the interorganismal signal exchange between the host plant and bradyrhizobia. Two field experiments were conducted on two adjacent sites in 1994 to determine whether the incubation of B. japonicum with genistein prior to application as an inoculant, or genistein, without B. japonicum, applied onto seeds in the furrow at the time of planting, increased soybean nodulation, N fixation, and total N yield. The results of these experiments indicated that genistein application increased nodule number and nodule dry matter per plant and hastened the onset of N fixation during the early portion of the soybean growing season, when the soils were still cool. Because these variables were improved, total fixed. N, fixed N as a percentage of total plant N, and N yield increased due to genistein application. The interaction between genistein application and soybean cultivars indicated that genistein application was more effective on N-stressed plants.
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  • 67
    ISSN: 1573-5036
    Keywords: actinorhizal plants ; aluminium toxicity ; Casuarina cunninghamiana ; Frankia ; nitrogen fixation ; nodulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In order to investigate the effects of Al on nodule formation and function in the Casuarina-Frankia symbiosis, inoculated plants were grown in sand culture at five nominal Al concentrations (0-880 μM Al) at pH 4.0. There was an Al-free control at pH 6.0 to assess the effects of pH 4.0 treatments. Mean N concentration of nodules was significantly less at pH 4.0 (1.83%) than at pH 6.0 (2.01%). There were nodulated plants at all Al levels, though there were fewer nodulated plants at 440 and 880 μM Al. Dry weights of nodules, shoots and roots were not reduced by Al concentrations at or below 220 μM Al, but were decreased by Al concentrations at or above 440 μM Al. Nodule weight expressed as a percentage of total weight did not differ significantly with respect to an Al-free control at pH 4. N concentrations of shoots and whole plants were significantly reduced at 440 μM Al. Nodular specific acetylene reduction activity (ARA) did not differ significantly among Al treatments. However, N2-fixation efficiency was decreased from 0.20 to 0.10 mg N fixed mg nodule dry weight−1 at 880 μM Al.
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  • 68
    ISSN: 1573-5036
    Keywords: endophytic microbes ; endo-symbiosis ; genomic fingerprinting ; infection ; marker genes ; nitrogen fixation ; PCR ; rep-PCR ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The extension of nitrogen-fixing symbioses to important crop plants such as the cereals has been a long-standing goal in the field of biological nitrogen fixation. One of the approaches that has been used to try to achieve this goal involves the isolation and characterization of stable endophytic bacteria from a variety of wild and cultivated rice species that either have a natural ability to fix nitrogen or can be engineered to do so. Here we present the results of our first screening effort for rice endophytes and their characterization using acetylene reduction assays (ARA), genomic fingerprinting with primers corresponding to naturally occurring repetitive DNA elements (rep-PCR), partial 16S rDNA sequence analysis and PCR mediated detection of nitrogen fixation (nif) genes with universal nif primers developed in our laboratory. We also describe our efforts to inoculate rice plants with the isolates obtained from the screening, in order to examine their invasiveness and persistence (stable endophytic maintenance). Lastly, we review our attempts to tag selected isolates with reporter genes/proteins, such as beta-glucuronidase (gus) or green fluorescent protein (gfp), in order to be able to track putative endophytes during colonization of rice tissues.
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  • 69
    ISSN: 1573-5060
    Keywords: ‘contig lines’ ; interspecific hybridisation ; genetic resources ; molecular markers ; Oryza glaberrima ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In the past, utilisation of African cultivated rice, Oryza glaberrima, in O. sativa breeding was hampered by high sterility in interspecific F1 and in early progenies. Recent development of mapped molecular markers provides the opportunity to rationalise and to monitor introgressions between the two cultivated rice species. Development of such introgressed lines through interspecific hybridisation and backcrossing represents high potential to create new genetic and transgressive variation. We are initiating an original marker-aided backcross program with the aim of producing a set of 100 ‘contig lines’, each one bearing an alien O. glaberrima chromosomal fragment of around 20 cM in the O. sativa genetic background. As a preliminary step, we are now developing a genetic linkage map based on STS and RAPD markers, using an interspecific backcross between O. sativa and O. glaberrima. BC1 plants will then be selected to expedite the production of ‘contig lines’ exhibiting only the target fragment. The interspecific polymorphism is anticipated to be large enough to make this methodology feasible. Many advantages are expected from this approach, such as: (i) systematic assessment of the useful genetic resources displayed by O. glaberrima, (ii) improved and simplified detection of QTLs and (iii) comparative analysis of genomic organisation of O. glaberrima vs. O. sativa. Current work on evaluation of STS and RAPD polymorphism between parents and development of the BC1 population is presented.
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  • 70
    ISSN: 1573-5060
    Keywords: Oryza sativa ; rice ; aluminium-resistance ; selection ; stress ; in vitro ; hydroponic cultures
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A selection procedure is described that isolated Al-resistant individuals from a sensitive rice (Oryza sativa L.) genotype. Somaclonal variation was used as the only source of variability and selection pressures were applied at both callus and regenerated plant levels. When 10 week-old, embryo-derived calli were submitted to different Al stresses for a period of 20 weeks. After this in vitro stress period, selected calli were grown during 18 weeks, without selection pressure, on regeneration media. Selection pressures were applied on regenerated plants (R0), and 9 R0 plants which produced seeds were selected. The transmission of the Al-resistant character to the R1, R2, R3 and R4 generations was then investigated, and three plant lines which had an increased percentage of Al-resistant plants till the fourth generation of self-pollination, were identified. One was from a callus maintained on an Al-free medium. The efficiency of in vitro selection pressures was therefore debated.
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  • 71
    ISSN: 1573-5060
    Keywords: Oryza sativa ; japonica rice cultivar ; mature embryo ; primary calli ; protoplasts ; green plant regeneration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A plant regeneration system from rice protoplasts using calli derived from mature embryos was established for the two Brazilian modern rice cultivars IAC-201 and IAC-165. After 30 to 40 days of in vitro culture it was possible to obtain on average 6 million protoplasts per gram of callus. Microscopic selection of embryogenic calli was a key step for protoplast isolation. The production of embryogenic calli increased when L-proline and casein hydrolysate were used in the callus induction medium. The Oc or IR52 nurse cell lines were essential for protoplast division. Different regeneration media were studied and 139 plants were regenerated which set seed. Some of the regenerated plants showed morphological variation such as the presence of awns in spite of the short time of the in vitro culture.
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  • 72
    ISSN: 1573-5060
    Keywords: Oryza sativa ; photoperiod sensitive genic male-sterile rice (PSGMR) ; inheritance ; anther culture ; pollen plant ; polyploidy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The fertility segregations of F1, F2, BCF1 descended from crosses between PSGMR and japonica varieties, and F1's anther cultured homozygous diploid pollen plant populations (H2) were studied to reveal the genetic mechanism of photoperiod sensitive genic male sterility in PSGMR under natural daylight length at Shanghai. Rate of bagged seed-setting was used as an indicator of fertility. Fifteen F1 showed complete fertility similar to their parents. The ratio of completely sterile plants to fertile plants in fifteen F2 and four BCF1 was 1:15 and 1:3, respectively. The ratio of completely sterile to fertile diploid pollen plants in nine diploid populations (H2) was 1:3. These results demonstrated that the photoperiod sensitive genic male sterility in PSGMR was governed by two pairs of independent major recessive genes. There were no significant fertility segregations in hybrids F1 and selfed F2 between Nongken 58S and its derivatives 7001S, 5088S, 5047S and M105-9S, indicating that the photoperiod sensitive genic male-sterile genes in Nongken 58S were allelic to those in its derivatives. Several photoperiod sensitive genic male-sterile diploid pollen lines were bred from anther cultured homozygous diploid populations (H2) in about a three-year period. Most of these diploid lines showed significant fertility transformation and stable complete sterility from 5 August to 5 September, excellent agronomic traits and high resistance to blast and bacterial leaf blight.
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  • 73
    ISSN: 1573-5060
    Keywords: hybrid sterility ; anther indehiscence ; spikelet sterility ; pollen grain fertility ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Hybrid sterility of the cross between Silewah, an Indonesian native variety and Hayakogane, a Hokkaido rice variety in Japan was confirmed to be caused by anther indehiscence, based on a lot of spikelets with fewer numbers than 3 of dehiscent anthers and fewer numbers of pollens poured onto stigma per spikelet in Silewah/Hayakogane F1. In Silewah/Hayakogane//Hayakogane BC1F1, spikelet fertility was correlated with mean number of dehiscent anthers per spikelet. So, genic analyses for hybrid sterility by anther indehiscence were conducted by scoring spikelet sterility in F2, BC1F1s and triple cross. As a result, it was concluded that the hybrid sterility was controlled by complementary action of three dominant genes. Silewah has one of the three genes and Hayakogane has the other two. It was presumed that the two genes which Hayakogane possesses were derived from those of Aikoku, an old native variety in Japan.
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  • 74
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    Plant growth regulation 21 (1997), S. 1-6 
    ISSN: 1573-5087
    Keywords: ammonium ; cell growth ; medium pH ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The possible involvements of a decrease in medium pH and accumulation of ammonium in ammonium-inhibited growth of rice cells were investigated. Ammonium, applied at concentrations ranging from 20 to 50 mM, markedly inhibited cell growth and decreased medium pH. The accumulation of ammonium in rice cells was observed only when ammonium concentration was 40 mM or higher. Ammonium-inhibited growth was alleviated when medium pH was buffered with MES [2-(N-morpholino)-ethanesulfonic acid]. However, no difference in ammonium level was observed between buffered and unbuffered ammonium-fed rice cells. Succinic acid, α-ketoglutaric acid, glutamic acid and glutamine were found to be effective in reversing ammonium-inhibited growth of rice cells and reducing a fall in pH in the ammonium-fed medium. Succinic acid, α-ketoglutaric acid and glutamic acid decreased the level of ammonium in ammonium-fed rice cells. However, glutamine was unable to decrease the ammonium level in ammonium-fed rice cells. The current results suggest that a decrease in medium pH is a factor responsible for growth inhibition of ammonium-fed rice cells.
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  • 75
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    Plant growth regulation 22 (1997), S. 163-168 
    ISSN: 1573-5087
    Keywords: Oryza sativa ; paraquat ; putrescine ; spermidine ; spermine
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The protective effect of polyamines against paraquat (PQ) toxicity of rice (Oryza sativa) leaves was investigated. PQ treatment resulted in a higher putrescine (PUT) and lower spermidine (SPD) and spermine (SPM) levels in rice leaves. Pretreatment with SPD and SPM, which resulted in a 10- and 20-fold increase in endogenous level of SPD and SPM, respectively, reduced PQ toxicity (30%). Limited reduction of PQ toxicity by exogenous SPD and SPM is most likely due to the fact that they are not readily transported in rice leaf cells and localized to those areas along the cut edges of detached rice leaves [4]. PUT pretreatment did not increase endogenous SPD and SPM levels and had no effect on reducing PQ toxicity. It was found that 1,10-phenanthroline, an iron chelator, treatment reduced the toxicity of PQ (35%) and increased the levels of SPD (27%). The results indicate that reduction of PQ toxicity by SPD and SPM is due to increased activities of catalase (18%) and peroxidase (40%).
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  • 76
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    Plant growth regulation 21 (1997), S. 37-42 
    ISSN: 1573-5087
    Keywords: abscisic acid ; growth ; methyl jasmonate ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The effects of abscisic acid (ABA) and methyl jasmonate (MJ) on growth of rice seedlings were compared. The lowest tested concentration of ABA and MJ that inhibited seedling growth was found to be 4.5 and 0.9 µM, respectively. Growth inhibition by ABA is reversible, whereas that by MJ is irreversible. GA3 was found to be more effective in reversing inhibition of shoot growth by ABA than by MJ. KCl partially relieved MJ-inhibited, but not ABA-inhibited, growth of rice seedlings. The beneficial effect of K+ on growth of rice seedlings in MJ medium could not be replaced by Li+, Na+ or Cs+. MJ treatment caused a marked release of K+ into the medium. In order to understand whether cell wall-bound peroxidase activity was inversely related to rice seedling growth, effects of ABA and MJ on cell wall-bound peroxidase activity were also examined. Results indicated that both ABA and MJ increased cell wall-bound peroxidase activity in roots and shoots of rice seedlings. Although MJ (4.5 µM) was less effective in inhibiting root growth than ABA (9 µM), MJ was found to increase more cell wall-bound peroxidase activity in roots than ABA.
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  • 77
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    Plant growth regulation 21 (1997), S. 195-201 
    ISSN: 1573-5087
    Keywords: abscisic acid ; ammonium ; benzyladenine ; leaf senescence ; methionine sulfoximine ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The relationship between ammonium accumulation and senescence of detached rice leaves was investigated. Ammonium accumulation in detached rice leaves coincided closely with dark-induced senescence. Exogenous NH4Cl and methionine sulfoximine, which caused an accumulation of ammonium in detached rice leaves, promoted senescence. Treatments such as light and benzyladenine, which retarded senescence, decreased ammonium level in detached rice leaves. Abscisic acid, which promoted senescence, increased ammonium level in detached rice leaves. The current results suggest that ammonium accumulation may be involved in regulating senescence. Evidence was presented to show that ammonium accumulated in detached rice leaves increases tissue sensitivity to ethylene. The accumulation of ammonium in detached rice leaves during dark-induced senescence is attributed to a decrease in glutamine synthetase activity and an increase in reduction of nitrate.
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  • 78
    ISSN: 1573-5036
    Keywords: Acetobacter ; auxin ; 2 ; 4-D ; clover ; nitrogen fixation ; Rhizobium ; rice ; transgenic plants
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Root morphology is both genetically programmed and environmentally determined. We have begun an analysis into the components of root development by: (a) constructing a range of transgenic clover plants to assess some of the genetic programs involved as both roots and nodules are initiated and develop. These transgenic plants report on auxin activity, flavonoid synthesis and chitinase expression and suggest a role for flavonoids as regulators of auxin levels; and (b) determining in cereals the effect of both added auxin and specific microorganisms on the initiation and development of modified root outgrowths and lateral roots. Appropriate combinations of auxin, the nitrogen fixing Acetobacter diazotrophicus, and rice variety did give rise to some plants which grew slowly for over 12 months in a nitrogen-free medium.
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  • 79
    ISSN: 1573-5036
    Keywords: actinorhizal plants ; evolution ; nitrogen fixation ; phylogenetic hypotheses
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Current taxonomic schemes place plants that can participate in root nodule symbioses among disparate groups of angiosperms. According to the classification scheme of Cronquist (1981) which is based primarily on the analysis of morphological characters, host plants of rhizobial symbionts are placed in subclasses Rosidae and Hamamelidae, and those of Frankia are distributed among subclasses Rosidae, Hamamelidae, Magnoliidae and Dilleniidae. This broad phylogenetic distribution of nodulated plants has engendered the notion that nitrogen fixing endosymbionts, particularly those of actinorhizal plants, can interact with a very broad range of unrelated host plant genotypes. New angiosperm phylogenies based on DNA sequence comparisons reveal a markedly different relationship among nodulated plants and indicate that they form a more coherent group than has previously been thought (Chase et al., 1993; Swensen et al., 1994; Soltis et al., 1995). Molecular data support a single origin of the predisposition for root nodule symbiosis (Soltis et al., 1995) and at the same time support the occurrence of multiple origins of symbiosis within this group (Doyle, 1994; Swensen, 1996; Swensen and Mullin, In Press).
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  • 80
    ISSN: 1573-5036
    Keywords: Azospirillum brasilense ; evolution ; nifA-lacZ ; nifH-lacZ ; nitrogen fixation ; para-nodules ; symbiosis ; wheat ; 2 ; 4-D
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Recent advances towards achieving significant nitrogen fixation by diazotrophs in symbioses with cereals are reviewed, referring to the literature on the evolution of effective symbioses involving rhizobia and Frankia as microsymbionts. Data indicating that strains of Acetobacter and Herbaspirillum colonizing specific cultivars of sugarcane as endophytes make a significant contribution to the nitrogen economy of this crop improves the prospects that similar associative systems may be developed for other gramineous species such as rice and wheat. By contrast, the transfer of nodulation genes similar to those in legumes or Parasponia to achieve nodulation in crops like rice and wheat is considered to be a more ambitious and distant goal. Progress in developing an effective associative system for cereals has been materially assisted by the development of genetic tools based on the application of lacZ and gusA fusions with the promoters of genes associated with nitrogen fixation. These reporter genes have provided clear evidence that ‘crack-entry’ at the points of emergence of lateral roots or of 2,4-D induced para-nodules is the most significant route of endophytic colonization. Furthermore, using the laboratory model of para-nodulated wheat, there is now evidence that the ability of azospirilla and other nitrogen fixing bacteria to colonize extensively as endophytes can be genetically controlled. The most successful strain of Azospirillum brasilense (Sp7-S) for endophytic colonization and nitrogen fixation in wheat seedlings is a mutant with reduced exopolysaccharide production. Most other strains of azospirilla do not colonize as endophytes and it is concluded that though these are poorly adapted to providing nitrogen for the host plant, they are well adapted for survival and persistence in soil. A research program combining the study of endophytic colonization by azospirilla with an examination of the factors controlling the effectiveness of association (oxygen tolerance and nitrogen transfer) is now being pursued. It is proposed that a process of facilitated evolution of para-nodulated wheat involving the stepwise genetic improvement of both the prospective microsymbionts and the cereal host will eventually lead to effective nitrogen-fixing associations. In the attempt to achieve this goal, continued study of the endophytes occurring naturally in sugar cane and other grasses (e.g. Azoarcus sp.) should be of assistance.
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  • 81
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    Plant and soil 194 (1997), S. 1-10 
    ISSN: 1573-5036
    Keywords: endophyte ; legume-Rhizobium ; nif gene ; nitrogen fixation ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Recent advances in understanding symbiotic Rhizobium-legume interactions at the molecular level, the discovery of endophytic interactions of nitrogen-fixing organisms with non-legumes, and the ability to introduce genes into rice by transformation have stimulated researchers world wide to harness opportunities for nitrogen fixation and improved N nutrition in rice. In a think-tank workshop organized by IRRI in 1992, the participants reaffirmed that such opportunities do exist for cereals and recommended that rice be used as a model system. Subsequently, IRRI developed a New Frontier Project to coordinate the worldwide collaborative efforts among research centers committed to reducing dependency of rice on mineral N resources. An international Biological Nitrogen Fixation (BNF) working group was established to review, share research results/materials and to catalyze research. The strategies of enabling rice to fix its own N are complex and of a long-term nature. However, if achieved, they could enhance rice productivity, resource conservation, and environmental security. The rate of obtaining success would, of course, benefit tremendously from concerted efforts from a critical mass of committed scientists around the world, as well as a constant and continued funding support from the ‘donor’ community.
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  • 82
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    Plant and soil 194 (1997), S. 57-64 
    ISSN: 1573-5036
    Keywords: Azoarcus ; endorhizosphere ; nif-genes ; nitrogen fixation ; 16S ribosomal RNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The current knowledge on the divergence within the genus Azoarcus and about interactions with grasses is summarized. Grass-associated members of this genus of diazotrophs have only been isolated from a salt- and flood-tolerant pioneer plant in Pakistan, Kallar grass (Leptochloa fusca (L.) Kunth). Members of these bacteria belong to the beta subclass of the Proteobacteria, most closely related to purple bacteria such as Rhodocyclus purpureus. The isolates from one single host plant showed a surprising divergence, consisting of five groups of Azoarcus distinct at the species level. Molecular diagnostic tests, which are based on 16S ribosomal RNA sequences, allowed preliminary assignment of isolates to Azoarcus by PCR amplification and sequencing of PCR products. Moreover, the moleculer tests enabled us to detect an unculturable strain in Kallar grass roots, stressing that classical cultivation techniques at times fail to detect some groups of the microbial population. Using similar techniques, sequences rooting in the Azoarcus clade were also detected in field-grown rice, indicating that the natural host range might extend to rice. In gnotobiotic laboratory cultures, a member of Azoarcus is able to colonize rice roots endophytically: bacteria invade the roots in the zone of elongation and differentiation, colonize the cortex intra- and inter-cellularly, and penetrate deeply into the vascular system, entering xylem vessels, allowing systemic spreading into the rice shoot. Recently, we detected expression of nitrogenase of Azoarcus cells inside roots of rice seedlings, a result encouraging us to analyze interactions with rice in detail.
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  • 83
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    Euphytica 95 (1997), S. 253-258 
    ISSN: 1573-5060
    Keywords: rice ; Oryza sativa ; widely compatible restorer ; fertility restoration ability ; anther culture ; inheritance ; Indica-japonica heterosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Following anther culture of various F1 hybrids of indica restorer (R) lines/wide compatible varieties (WCVs) and japonica R lines/WCVs, the homozygous diploid plants (2n) generated were test-crossed with indica WA type cytoplasmic-genetic male sterile (CMS) line Zhanshan 97A (WA), indica testers Nanjing 11 and Nante, japonica BT CMS line Hanfeng A (BT), and japonica testers Balilla and Akihikari to identify widely compatible restorer lines. The results of this study showed that among the diploid pollen plants generated from F1 hybrids of indica R lines/WCVs, 36.7% and 64.7% possessed normal fertility restoration ability (rate of seed-setting 〉 80%) to Hanfeng A and Zhanshan 97A, respectively. 71.3% and 32.3% had normal fertility restoration ability to Hanfeng A and Zhanshan 97A, respectively, in diploid pollen plants derived from the japonica R lines/WCVs F1's anther culture. Several widely compatible R lines were selected from anther culture of F1 hybrids of indica R lines/WCVs and japonica R lines/WCVs. These widely compatible R lines derived from diploid pollen plants showed good wide compatibility and restoration ability both to WA and BT type CMS lines. Strong standard heterosis of major agronomic traits and yield traits was observed in F1 test-crosses of widely compatible R lines with Hanfeng A and Zhanshan 97A. The wide compatibility in widely compatible R lines H17, H158 and H281 was studied by a set of three-way crosses. Segregation of the fertile plants with seed-setting rate 〉 70% and semi-fertile plants with seed-setting rate 〉 69.9% agreed with a ratio of 1:1, indicating that wide compatibility in these widely compatible R lines is governed by a pair of major genes.
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  • 84
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    Euphytica 95 (1997), S. 301-307 
    ISSN: 1573-5060
    Keywords: gene location ; heading time ; Oryza sativa ; photoperiod sensitivity ; rice ; trisomic analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Recent genetic analyses on heading-time of rice indicated that almost all the well-adapted varieties in the temperate zone carry a strong photoperiod-sensitivity gene E1, a dominant allele of E1 locus. In order to identify the chromosome on which E1 is located, a trisomic analysis was made using two primary trisomic series originating from the japonica varieties, Nipponbare and Kinmaze, respectively. The Nipponbare and Kinmaze series were crossed with heading-time tester lines, EG0 and EG3, respectively, both of which did not carry the E1. The F2 populations for chromosome 1, 2, and 3 could not be analyzed due to lack of seed. All the other F2 populations showed distinct segregation into early-type and late-type plants caused by the E1 locus segregation, which suggested that the trisomic analysis for E1 locus could be efficiently made. Both disomic and trisomic groups in the F2 population from the cross of the trisomic line for chromosome 7 × EG0 showed a segregation ratio significantly different at the 1% level from a ratio of 1 [e1e1; early]: 3 [E1e1, E1E1; late]. This suggested that E1 was located on chromosome 7. Subsequently, the linkage analysis was made using three morphological marker genes on chromosome 7. It was recognized that E1 was linked to rfs (rolled fine strip gene) and slg (slender glume gene) with recombination values of 16.3 ± 5.88 and 9.1 ± 4.72%, respectively. From these results, it can be concluded that E1 is most likely to be located on chromosome 7.
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  • 85
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    Euphytica 96 (1997), S. 135-142 
    ISSN: 1573-5060
    Keywords: Oryza sativa ; chilling tolerance ; in vitro selection ; rice ; somaclonal variation ; field performance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Embryo-derived calli of four rice varieties cultivated at high altitude in Burundi — Facagro 57, Facagro 76, Kirundo 3 and Kirundo 9 — were submitted to different temperature regimes. The percentage of regenerating calli greatly varied depending on variety, length of culture and callus temperature treatment. The reduction of regeneration percentages induced by low temperature was more pronounced in the more sensitive varieties. Regenerated plants (R0) and their progenies in R1, R2 and R3 were cold-screened together with control plants. In all varieties, significantly higher survival rates were obtained in R3 with in vitro plants than with control plants. Such chilling tolerance improvement was not obtained following a massal selection applied during 3 successive generations onto the control plants. In vitro plants regenerated from calli cultivated either at 25 °C, either at 4 °C, were cultivated at different altitudes in Burundi during two successive generations. For most observed traits, the in vitro plants were characterized by lower means, larger variation and higher maximum values than the control plants. The most chilling-tolerant somaclonal families were most usually characterized by extensive differences in fatty acid composition, chilling-induced electrolyte leakage and chlorophyll fluorescence, compared to the varieties they derived from.
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  • 86
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    Euphytica 97 (1997), S. 25-29 
    ISSN: 1573-5060
    Keywords: Oryza sativa ; amylograph viscosity characteristics ; inheritance ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Southern United States long grain rice (Oryza sativa L.) is a unique market type characterized by intermediate amylose content, gelatinization temperature, and amylograph viscosity profile characteristics. Rice breeders sometimes use long grain germplasm with differing amylograph viscosity profiles. The inheritance of rice amylograph viscosity profiles has not been ascertained and, thus, was the objective of this study. A six parent diallel (parents plus F1 hybrids) was evaluated at Stuttgart, AR during 1994 and 1995. In 1994, 65 F2 plants from the ‘L-202’ × ‘Newrex’ and L-202 × ‘Katy’ crosses were space planted, and in 1995, the 65 F2:3 lines were planted as hill plots. The inheritance of amylograph viscosity profiles appeared to be controlled by a single locus with genes with additive effects. The results of the diallel analysis also support control by a single locus with genes with additive effects because GCA effects were significant and SCA effects nonsignificant for peak, hot paste, and cool paste viscosities. Intermediate amylose content and intermediate amylograph viscosity profiles were strongly correlated. Selection first for intermediate amylose content followed by reselection for intermediate hot paste viscosities would identify long grain genotypes with southern United States long grain cooking quality in progeny from crosses between southern United States long grain rice genotypes and softer cooking long grain genotypes.
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  • 87
    ISSN: 1573-5060
    Keywords: isozyme ; differentiation ; Oryza sativa ; rice ; upland rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Two rice ecotypes, the so-called lowland and upland populations, which carry different isozyme genotypes mostly at a single locus, are cultivated in Japan. The aim of this study was to examine the origin and the mechanism for keeping these genetic differences. The upland population is cultivated in upland fields and carries a different allele for a particular isozyme gene, Pgd-1, which has never been found in the lowland population. RFLP markers showed a weak trend for genetic differentiation between the two ecotypes. On the other hand, morphological, and physiological traits showed marked differences between the two ecotypes. Furthermore, based on the genotypic difference, two Japonica subgroups are defined in the upland population. Subgroup I is the minor group and carries key lowland characters, including the genotype for PGD. Subgroup II carries different traits and the genotype for PGD of the alternative subgroup. As an allelic difference for Pgd-1 is known to occur between the two ecospecies, Tropical (Tr) and Temperate (Tm) Japonicas, upland cultivars can be classified by diagnostic characters which distinguish a variety into Tr or Tm type. The upland population consists of three types of cultivars, Tr-, Tm- and intermediate-type. In contrast, the lowland population consists of a uniform Tm type Japonicas. As Japanese upland cultivars still have an isozyme allele specific to the Tr type, the upland population has a rather complex constitution which is presumably now being introgressed by lowland genetic material, but still represents a major difference at some genetic levels. Upland rice carries several stress-resistant genes which would be useful for lowland rice breeding. The genetic difference would be efficient for tagging upland specific traits by upland specific genetic markers.
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  • 88
    ISSN: 1573-5060
    Keywords: fertility restoration ; hybrid rice ; linkage analysis ; Oryza sativa ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Hybrid varieties developed by making use of the wild abortive cytoplasmic male sterility system account for 90% of hybrid rice produced. Previous inheritance studies have established that the fertility restoration in this system is controlled by two major loci, but the chromosomal locations of the fertility restorer (Rf) loci have yet to be resolved. In this study we determined the genomic locations of the two Rf loci by their linkage to molecular markers. The Rf gene containing regions were identified by surveying two bulks, made of 30 highly fertile and 46 highly sterile plants from a large F2 population of the cross between Zhenshan 97A and Minghui 63, with RFLP markers covering the entire rice genome. The survey identified two likely Rf gene containing regions, located on chromosomes 1 and 10 respectively. This was confirmed by ANOVA using a large random sample from the same F2 population and also with a genome-wide QTL analysis of a test-cross population. The results also showed that both loci have major effects of almost complete dominance on fertility restoration and the effect of the locus on chromosome 10 is larger than the one on chromosome 1. The two loci acted as a pair of classical duplicate genes; a single dominant allele at one of the two loci would suffice to restore the fertility to normal or nearly normal. Closely linked markers identified in this study may be used for marker assisted selection in hybrid rice breeding programs.
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  • 89
    ISSN: 1573-5060
    Keywords: Oryza sativa ; Aus ; rice ; hybrid sterility ; isozomes ; varietal diversity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Magnitudes of genetic variation within each of major varietal groups of cultivated rice were surveyed in terms of isozyme polymorphism and allelic differentiation of hybrid sterility loci, both of which are considered to have litt le selective value. Allelic differences for 20 isozyme loci were examined in a total of 337 accessions, including Indica and Japonica rices. Aus cultivars from India, Javanica cultivars and both landraces and cultivars from China. Eleven out of the 20 isozyme loci were polymorphic. The Aus cultivars contained more alleles per locus than others. The hybrid sterilities in the crosses among Chinese cultivars, Indica and Japonica cultivars were mainly controlled by locus S-5, whereas the hybrid sterilities of Aus cultivars, when they were crossed to Indica, Japonica or Javanica cultivars, were found to be controlled by allelic interaction at hybrid sterility loci S-5, S-7, S-9 and S-15. Also in terms of the number of alleles at S-5 and S-7, Aus cultivars contained more alleles than others. While the Aus group showed an extreme diversity for both hybrid sterility alleles and isozymes, modern cultivars from the south of YangZi River in China were classified into Indica type and those from the north were into Japonica, which were almost the same as those in Japan. On the basis of the measured polymorphism the Indica-Japonica differentiation was explained by founder effects, i.e., through selection and distribution of two original sources each with a unique set of markers. Contrastingly, the continuous and pronounced diversity in the Aus group was attributed to the absence of such a process. The intermediate groups in Yunnan province and Tai-hu Lake region of China are considered to be isolated from such founder effects, retaining an intermediate diversity in terms of isozymes and hybrid sterility genes. Since hybrid sterility hampers the exchange of genes between cultivars of different groups, the understanding of its genetic basis will be important in rice breeding, particularly in hybrid rice breeding.
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  • 90
    ISSN: 1573-5060
    Keywords: Oryza rufipogon ; Griff ; Oryza sativa ; interspecific hybrid ; hybrid swarms ; cytological abnormalities ; evolution and rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The morphology and cytology of selected hybrid swarms of wild and cultivated rices were studied following natural hybridization between the native species Oryza rufipogon Griff and exotic species Oryza sativa L. (var. Thaothabi and Moirangphoe). Similar studies were also conducted on populations developed through artificial hybridization of those two species. The morphological variation in plant height, anthocyanin pigmentation, Kernel and husk colour, sterility, presence of awns and grain shattering habits were similar in both natural (hybrid swarms) and artificially derived populations of interspecific hybrids. The cytological abnormalities such as quadrivalant formation at metaphase I, delayed separation, laggards and bridge formation, unequal separation and chromosomal elimination were also observed in both populations. These results indicated that the evolution of intermediate types had occurred due to genetic introgression from cultivated species to wild species. A systematic extinction of founder population was also noticed due to sudden ecological changes like deep submergence to medium submergence and human interference by growing cultivated species O. sativa L. in the area where wild species were being grown.
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  • 91
    ISSN: 1572-9788
    Keywords: DNA markers ; genetic linkage map ; marker-assisted breeding ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We have developed an RFLP framework map with 146 RFLP markers based on a doubled haploid population derived from a cross between an indica variety IR64 and a japonica variety Azucena. The population carries 50.2% of IR64 loci and 49.8% of Azucena loci, indicating an equal amount of genetic materials from each parent has been transmitted to the progenies through anther culture. However, some markers show segregation distortion. These distorted marker loci are located on 10 chromosomal segments. Using this map we were able to place 8 isozymes, 14 RAPDs, 12 cloned genes, 1 gene for brown planthopper (BPH) resistance, and 12 QTLs for grain length, grain width and length/width ratio onto rice chromosomes. The major gene for BPH resistance was mapped on chromosome 12 near RG463 and isozyme Sdh-1. Most of the QTLs identified for the three grain characters were closely linked on chromosomes 1, 2, 3 and 10. We concluded that the RFLP framework map presented here will be useful for mapping other genes segregating in this doubled haploid population. Thus rapid generation of doubled haploid lines and their unbiased segregation make it very attractive for gene mapping.
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  • 92
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    Biology and fertility of soils 24 (1996), S. 70-75 
    ISSN: 1432-0789
    Keywords: Key words Flooded rice soil ; Soil-trapped CH4 and CO2 ; δ13C values of CH4 and CO2 ; Greenhouse effect ; CO2 flux ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Pot experiments were conducted to monitor the changes in compositions and δ13C values of soil-trapped CH4 and CO2 in flooded rice soil with and without rice plants or rice straw. Incorporation of rice straw increased the concentration of CH4 and CO2 accumulated in soil, and the quantities of emitted CH4 to the atmosphere. Rice plants reduced the concentration of soil-trapped CH4 and CO2, and the decreased portion of CH4 was replaced by N2. A significantly negative correlation was found between soil-trapped CH4 and N2. The presence of rice plants increased the δ13C values of CH4. The δ13C values of CH4 tended to increase toward the end of the growing season and were positively correlated with concentration of soil-trapped CH4. A positive correlation between δ13C values of CH4 and CO2, and between the δ13C values of CH4 and its concentration, were observed. The CH4 in the rice stems was 4–14‰ enriched in 13C relative to soil-trapped CH4. In contrast, CO2 in rice plant stems was 1–9‰ lighter in 13C relative to soil-trapped CO2. These results are discussed in relation to the precursor pools and pathways of methanogenesis.
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  • 93
    ISSN: 1432-0789
    Keywords: Key words Cyanobacteria ; Soil inoculation ; N-transformation ; Inorganic N ; Easily oxidizable N ; Hydrolysable N ; Non-hydrolysable N ; Wetland rice ; Farmyard manure ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A field experiment was conducted with wetland rice (Oryza sativa cv. IR-36) in a sandy clay loam soil (Entisol) to study the effect of inoculation with a soil-based mixed culture of four diazotrophic cyanobacteria, Aulosira fertilissima, Nostoc muscorum, N. commune and Anabaena spp., on the N-flux in inorganic (NH4 ++NO3 –+ NO2 –), easily oxidizable, hydrolysable and non-hydrolysable forms of N in soil during vegetative growth periods of the crop. Effects on grain and straw yield and N uptake by the crop were estimated. The effects of applying urea N and N as organic sources, viz. Sesbania aculeata, Neem (Azardirachta indica) cake and FYM, each at the rate of 40 kg N ha–1, to the soil were also evaluated. Inoculation significantly increased the release of inorganic N, evidenced by its increased concentrations either in soil or in soil solution. However, such increases rarely exceeded even 4% of total N gained in different froms in the soil system by inoculation during the vegetative growth stages of the rice plant, when the nutritional requirement of the plants is at a maximum. Most of the N2 fixed by cyanobacteria remained in the soil as the hydrolysable form (about 85%) during this period. Inoculation caused an insignificant increase in grain (8%) and straw (11%) yield, which was, however, accompanied by a significant increase in N uptake by the grain (30%) and an increase in total uptake of 15.3 kg N ha–1. Such beneficial effects of inoculation varied in magnitude with the application of organic sources, with farmyard manure (FYM) being the most effective. Application of urea N, on the other hand, markedly reduced such an effect.
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  • 94
    ISSN: 1573-5036
    Keywords: competition ; drought ; Medicago falcata ; Medicago sativa ; nitrogen fixation ; nodulation ; rhizobia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Drought is an important environmental factor that can affect rhizobial competition and N2 fixation. Three alfalfa (Medicago sativa L. and M. falcata L.) accessions were grown in pots containing soil from an irrigated (Soil 1) and a dryland (Soil 2) alfalfa field in northern Utah, USA. Mutants of three strains of Rhizobium meliloti Dang. from Pakistan (UL 136, UL 210, and UL 222) and a commercial rhizobial strain 102F51a were developed with various levels of resistance to streptomycin. Seeds inoculated with these individual streptomycin-resistant mutants were sown in the two soils containing naturalized rhizobial populations. Soils in the pots were maintained at −0.03, −0.5, and −1.0 MPa. After 10 weeks, plants were harvested and nodule isolates were cultured on agar medium with and without streptomycin to determine nodule occupancy (proportion of the nodules occupied by introduced rhizobial strains). Number of nodules, nodule occupancy, total plant dry weight, and shoot N were higher for Soil 1 than Soil 2. Number of nodules, plant dry weight, and shoot N decreased as drought increased from −0.03 to −1.0 MPa in the three alfalfa accessions. Rhizobial strains UL 136 and UL 222 were competitive with naturalized alfalfa rhizobia and were effective at symbiotic N2 fixation under drought. These results suggest that nodulation, growth, and N2 fixation in alfalfa can be improved by inoculation with competitive and drought-tolerant rhizobia and may be one economically feasible way to increase alfalfa production in water-limited environments.
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  • 95
    ISSN: 1573-5036
    Keywords: cultivar, grazing ; 15N ; nitrogen fertilizer ; nitrogen fixation ; Trifolium repens
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Forage production and N2 fixation were determined for nine cultivars of white clover (Trifolium repens L.) grown with perennial ryegrass (Lolium perenne L.) and receiving nitrogen (N) fertilizer at either 0 or 390 kg N ha-1 yr-1. The site was grazed by sheep at 3 or 6 (in winter and summer) week intervals and N fertilizer was applied at 30 kg N ha-1 after each grazing. Annual white clover production showed a 2-fold variation between cultivars and was positively correlated with total pasture production in the 0 N treatment. Nitrogen fertilizer application increased average total pasture dry matter (DM) production from 12830 to 16010 kg ha-1 yr-1, but decreased average white clover production from 3600 to 2970 kg DM ha-1 yr-1. Fertilizer N application decreased annual N2 fixation from 111 to 47 kg N ha-1 (mean for all cultivars, using 15N dilution), with the decline occurring predominantly in spring and summer. The decrease in N2 fixation in spring from 47 to 18 kg N ha-1 was due largely to a decrease in clover DM production. In contrast, N application decreased average N2 fixation in summer from 36 to 14 kg N ha-1 due mainly to a large decrease in the proportion of clover N derived from atmospheric N2 (from 49 to 24%), with clover DM production falling by only 10%. Clover cultivars showed a variation in annual N2 fixation of about 3-fold under both N regimes. During winter and spring, the amount of N fixed by the different cultivars was determined predominantly by their DM production in both N regimes. In contrast, during summer and autumn there was a marked variation between cultivars in tolerance of N2 fixation to increased soil inorganic N due to N fertilizer application. This was evident from a significant cultivar × N interaction for the proportion (PN) of clover N derived from N2 fixation. During summer/autumn, PN for Kopu was similar in the 0 and 390 N treatments, whereas PN declined by up to two-thirds for the other cultivars. Consequently, in summer/autumn the amount of N fixed by Kopu decreased by only 20% (from 65 to 52 kg N ha-1) due to N application whereas it decreased by 40–80% (to 15–34 kg N ha-1) for the other cultivars. Thus, N2 fixation during winter/spring was highest for the most productive large-leaved cultivars (Kopu, Aran and Pitau) either in the absence or presence of added N. In contrast, in summer/autumn the cultivars differed in tolerance to added N, and N2 fixation in the 390 N treatment was higher for the more tolerant cultivar Kopu than for the other cultivars.
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  • 96
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    Plant and soil 178 (1996), S. 215-222 
    ISSN: 1573-5036
    Keywords: drought stress ; gnotobiotic assembly ; Mimoseae ; nitrogen fixation ; organic sulfide ; plant age ; sulfate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Carbon disulfide (CS2) and carbonyl sulfide (COS) are colorless, foul-smelling, volatile sulfur compounds with biocidal properties. Some plants produce CS2 or COS or both. When used as an intercrop or forecrop, these plants may have agronomic potential in protecting other plants. Most of the factors which affect production of these plant-generated organic sulfides are unknown. We determined the effects of sulfate concentration, plant age, nitrogen fixation, drought stress, root injury (through cutting), and undisturbed growth on COS production in Leucaena retusa or Leucaena leucocephala and the effect of some of these factors on CS2 production in Mimosa pudica. In addition, we determined if organic sulfides were produced in all Leucaena species. When L. retusa and M. pudica seedlings were grown in a plant nutrient medium with different sulfate concentrations (50 to 450 mg SL-1), COS or CS2 from crushed roots generally increased with increasing sulfate concentration. COS production was highest (≤74 ng mg-1 dry root) for young L. retusa seedlings and declined to low amounts (〈5 ng mg-1 dry root) for older seedlings. Nitrogen fixation reduced the amounts of COS or CS2 produced in L. leucocephala and M. pudica. Under conditions of undisturbed growth, root cutting, or drought stress, no COS production was detected in 4-to 8-weeks-old L. retusa plants. COS or CS2 or both was obtained from crushed roots or shoots of all 13 known Leucaena species.
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  • 97
    ISSN: 1573-5036
    Keywords: competitiveness ; inoculant ; nitrogen fixation ; nodulation ; soybean ; yield
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Bradyrhizobium japonicum strain TA-11NOD+, with altered indole biosynthesis, exhibited enhanced nodulation and nitrogen fixation on soybean in previous greenhouse studies. In this study, field experiments were conducted at Upper Marlboro, Maryland, in the summers of 1988 and 1993. In 1988, the site used was essentially free of soybean-nodulating bacteria and seed yield in plots inoculated with either I-110ARS or TA-11NOD+ was significantly higher by 12 or 20%, respectively, than that of the uninoculated controls. The 1993 site had an indigenous soil population (about 104 cells g-1) of symbiotically ineffective soybean-nodulating bacteria. Nevertheless, six-week-old ‘Morgan’ soybean plants inoculated with strain TA-11NOD+ had 44% more nodules and exhibited 50% more nitrogen fixation by acetylene reduction when compared with plants that received the parental strain I-110ARS. Nodule occupancy, as determined using genetic markers for rifampicin and streptomycin resistance, was significantly higher for strain TA-11NOD+ than for strain I-110ARS. Overall, for the two years and the two soybean genotypes, the yield obtained with TA-11NOD+ was 6% higher than that obtained with I-110ARS. Competition experiments were conducted in the greenhouse and strain TA-11NOD+ was significantly more competitive than strain I-110ARS in competition with strains USDA 6 or USDA 438.
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    Plant and soil 186 (1996), S. 173-187 
    ISSN: 1573-5036
    Keywords: Bradyrhizobium ; legumes ; nitrogen fixation ; Nod Factors ; nodulation ; Rhizobium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Genes controlling nitrogen-fixing symbioses of legumes with specialized bacteria known as rhizobia are presumably the products of many millions of years of evolution. Different adaptative solutions evolved in response to the challenge of survival in highly divergent complexes of symbionts. Whereas efficiency of nitrogen fixation appears to be controlled by quantitative inheritance, genes controlling nodulation are qualitatively inherited. Genes controlling nodulation include those for non-nodulation, those that restrict certain microsymbionts, and those conditioning hypernodulation, or supernodulation. Some genes are naturally occurring polymorphisms, while others were induced or were the result of spontaneous mutations. The geographic patterns of particular alleles indicate the role of coevolution in determining symbiont specificites and compatibilities. For example, the Rj4 allele occurs with higher frequency (over 50%) among the soybean (G. max) from Southeast Asia. DNA homology studies of strains of Bradyrhizobium that nodulate soybean indicated two groups so distinct as to warrant classification as two species. Strains producing rhizobitoxine-induced chlorosis occur only in Group II, now classified as B. elkanii. Unlike B. japonicum, B. elkanii strains are characterized by (1) the ability to nodulate the rj1 genotype, (2) the formation of nodule-like structures on peanut, (3) a relatively high degree of ex planta nitrogenase activity, (4) distinct extracellular polysaccharide composition, (5) distinct fatty acid composition, (6) distinct antibiotic resistance profiles, and (7) low DNA homology with B. japonicum. Analysis with soybean lines near isogenic for the Rj4 versus rj4 alleles indicated that the Rj4 allele excludes a high proportion of B. elkanii strains and certain strains of B. japonicum such as strain USDA62 and three serogroup 123 strains. These groups, relatively inefficient in nitrogen fixation with soybean, tend to predominate in soybean nodules from many US soils. The Rj4 allele, the most common allelic form in the wild species, has a positive value for the host plants in protecting them from nodulation by rhizobia poorly adapted for symbiosis.
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  • 99
    ISSN: 1573-5060
    Keywords: Oryza sativa ; rice ; chilling ; electrolyte leakage ; chlorophyll fluorescence ; seed dormancy ; seed germination
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Rice varieties were screened for chilling tolerance during germination and vegetative growth using different techniques. The effects of temperature during germination were investigated from 10 to 25°C. The screening was most effective at 10°C. Time of data collection has to be considered in order to discriminate slow germinating from chilling sensitive varieties. Chilling survival tests (10°C) applied at the 2-leaf stage revealed that different chilling durations brought complementary results: the longer treatments allowed to identify the most tolerant varieties, while shorter treatments allowed to distinguish intermediate from most sensitive rices. Results of chilling tests applied at the 2- and the 8-leaf stages showed a high correlation. Low-temperature electrolyte leakage and low-temperature fluorescence were also highly correlated to each other and to survival tests applied at the same development stage. By contrast, weak correlations were observed between low-temperature germination and plantlet chilling survival. It is concluded that low-temperature electrolyte leakage and low-temperature fluorescence are good indicators of chilling tolerance during the vegetative growth. The possibility to use a chilling screening procedure applied at this stage in order to predict the chilling tolerance at other development stages is discussed.
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  • 100
    ISSN: 1573-5060
    Keywords: heading time ; gene analysis ; Oryza sativa ; photoperiod insensitivity ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The release of extremely early maturing varieties has made it possible to cultivate rice in Hokkaido (NL45-42°) in Japan, the northern limit region of paddy rice cultivation. Until then, rice cultivation in this region has been impracticable due to the climate condition, especially short summer and long-day more than 15 hours during summer. Experiment results confirmed that the success of rice cultivation in this area depends on raising photoperiod insensitivity varieties with short basic vegetative growth period. Moreover, in this study, the genetic factors controlling the photoperiod insensitivity of Hokkaido varieties were analyzed by using 8 kinds of tester lines for three loci, E1, E2, and E3, controlling photoperiod sensitivity. It was found out that all the varieties examined carry el, a photoperiod insensitivity allele of E1 locus, but as for the other loci, E2 and E3, the existence of plural alleles were recognized. We have already clarified that almost all the japonica-type varieties grown in Japan (except Hokkaido) and Taiwan carry E1 bringing about strong photoperiod sensitivity. Accordingly, it can be concluded that el is the gene essential to Hokkaido varieties: the interchange of E1 with e1 enabled rice cultivation under long-day condition.
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