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  • 1
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-02
    Description: Dataset: SAB CTD Profiles for STP, DO, pH
    Description: Vertical profiles of depth, conductivity, salinity, temperature, pH, and dissolved O2 were measured on selected dates from 7 June 2018 to 10 August 2021 in nearshore shelf waters off Charleston, SC. The survey area was located in the region of 32° 42’ N, 79° 50’ W and 32° 51’ N, 79° 09’W. Profiles were obtained using a YSI 6820 sonde deployed by hand. These data were used to map the physical structure of the water column and assess inputs of groundwater effects on phytoplankton and benthic microalgae. Results may be of interest to others conducting research projects off Charleston, SC. Data were collected and interpreted by Jay Pinckney at the University of South Carolina, Columbia, SC. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/882177
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736557
    Keywords: water quality ; salinity ; temperature ; depth ; South Atlantic Bight
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 2
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    Texas Game and Fish Commission Marine Laboratory | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14207 | 9596 | 2020-08-23 22:50:08 | 14207 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: In order to obtain information on the characteristics of water and climate that prevail in Galveston Bay, East Bay, and West Bay, established stations were sampled regularly. Information derived from samples included water temperature and salinity. Additional information of this nature was derived from other bay studies. Information on river flow, air temperature and wind were derived from publications. Water temperatures were found to follow air temperatures closely. The prevailing winds in all but two months were on-shore winds. Salinities were found to vary inversely with the volume of fresh water entering the bays from the Trinity River. West Bay, due to its locations, is affected less than the other bays by fresh water from the Trinity River. Vertical and horizontal salinity gradients were found to be the normal pattern in East Bay and Galveston Bay. West Bay, with two major passes to the Gulf of Mexico and with no major source of fresh water, normally maintained higher salinities than the other bays.
    Keywords: Chemistry ; Oceanography ; GBIC ; hydrography ; meteorology ; salinity gradients ; temperature ; salinity ; water sampling
    Repository Name: AquaDocs
    Type: book_section
    Format: application/pdf
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    Format: 7
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  • 3
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    In:  http://aquaticcommons.org/id/eprint/15907 | 12051 | 2015-01-03 09:44:15 | 15907 | Indian Fisheries Association
    Publication Date: 2021-07-11
    Description: The introduction of the controlled hatchery system "Model CIFE D-81" resulted in a production of 60 lakhs Indian major carp seed in the drought area of eastern Uttar Pradesh. The hatchery system provided optimum temperature, dissolved oxygen and pH for breeding and hatching and also removed the metabolites generated. The technology is simple and the success of the program attracts pisciculturists.
    Keywords: Aquaculture ; hatcheries ; dissolved oxygen ; aquaculture systems ; controlled conditions ; pH ; temperature ; Cyprinidae ; freshwater ; Uttar Pradesh ; India
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 25-29
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  • 4
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    In:  http://aquaticcommons.org/id/eprint/4615 | 1240 | 2012-11-14 18:56:25 | 4615 | Johann Heinrich von Thünen-Institut, Bundesforschungsinstitut für Ländliche Räume, Wald und Fischerei
    Publication Date: 2021-07-05
    Description: AbstractGrowth and condition of fish are functions of available food and environmental conditions. This led to the idea of using fish as a “consumption sensor” for the measurement of food intake over a defined period of time. A bio-physical model for the estimation of food consumption was developed based on the von Bertalanffy model. Whereas some of the input variables of the model, the initial and final lengths and masses of a fish and the temperature within the time period considered can easily be measured, internal characteristics of the species have to be determined indirectly. Three internal parameters are used in the model: the maintenance consumption at 0°C, the temperature dependence of this consumption and the food efficiency, the percentage of the ingested food utilized. Estimates of the parameters for a given species can be determined by feeding experiments. Here, data from published feeding experiments on juvenile cod, Gadus morhua L., were used to validate the model. The average of the relative error for the food intake predicted by the model for individual fish was about 24 %, indicating that fish used the food with different efficiencies. However, grouping the fish according to size classes and temperature lowered the relative error of the predicted food intake for the group to typically 5 %. For a group containing all fish of the feeding experiment the relative prediction error was about 2 %.ZusammenfassungWachstum und Kondition der Fische sind von der verfügbaren Nahrung und von Umweltbedingungen abhängig. Dies führte zur Idee, Fisch als „Konsum-Sensor“ für die Messung der Nahrungsaufnahme über einen definierten Zeitraum zu verwenden. Auf Grundlage des von Bertalanffy-Modells wurde ein bio-physikalisches Modell zur Schätzung der Futteraufnahme entwickelt. Während einige der Eingangsgrößen des Modells leicht gemessen werden können (Anfangs- und Endlänge und -körpermasse der Fische und die Temperatur innerhalb des betrachteten Zeitraum), können interne Parameter der betrachteten Art nur indirekt bestimmt werden. Drei interne Parameter werden in dem Modell verwendet: Die Erhaltungskonsumtion bei0° C, die Temperaturabhängigkeit dieser Rate und der Wirkungsgrad der Nahrung (der Anteil der Nahrung ,der aufgenommen und verwendet und nicht ungenutzt wieder ausgeschieden wird). Die Modellparameter für eine bestimmte Art können durch Fütterungsversuche bestimmt werden. Um das Modell zu validieren wurden Daten aus veröffentlichten Fütterungsversuchen mit juvenilen Kabeljau (Gadus morhua L.) verwendet. Modell und Wirklichkeit weichen in der Regel voneinander ab. Der durchschnittliche relative Fehler der durch das Modell vorhergesagten Nahrungsaufnahme betrug für Einzelfische etwa 24%, was darauf hinweist, dass einzelne Fisch die Nahrung mit unterschiedlichen Wirkungsgraden verwerten. Allerdings senkte die Gruppierung der Fische nach Größenklassen und Temperatur den relativen Vorhersagefehler für die Nahrungsaufnahme der Gruppe auf etwa 5%. Für alle Fische im Fütterungsversuch ist der relative Vorhersagefehler etwa 2%.
    Description: Johann Heinrich von Thünen-Institute, Federal Research Institute of Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung - Information on Fishery research in 2010
    Keywords: Education ; Fisheries ; Biology ; cod ; food consumption ; growth ; changes of conditions ; temperature ; von Bertalanffy model
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 49-61
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  • 5
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    In:  http://aquaticcommons.org/id/eprint/5590 | 3 | 2011-09-29 14:46:37 | 5590 | Florida Cooperative Fish and Wildlife Research Unit
    Publication Date: 2021-07-11
    Description: The endangered Florida snail kite (Rostrhamlls sociaiJilis) feeds exclusively on applesnails(Pomacea pailiclosa), yet we lack direct observations that link applesnail behavior to snailkite foraging success. The purpose of our study was to evaluate the temperature-activityprofile of applesnails in the context of restricted foraging opportunities for snail kites.Applesnail activity was monitored in water temperatures ranging from 2-24
    Description: This document was submitted by the Florida Cooperative Fish and Wildlife Research Unit
    Keywords: Biology ; Ecology ; activity ; applesnail ; Pomacea pailiclosa ; prey availability ; Rostrhamus sociabilis ; temperature ; snail kite ; Florida
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
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    Format: 75-81
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  • 6
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    In:  foe@vti.bund.de | http://aquaticcommons.org/id/eprint/6655 | 1240 | 2011-09-29 13:13:15 | 6655 | Bundesforschungsanstalt für Fischerei
    Publication Date: 2021-06-25
    Description: Johann Heinrich von Thunen-Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung – Information on Fishery research in 2010
    Keywords: Biology ; Ecology ; Fisheries ; fish diseases ; eel diseases ; German Bight ; distribution area ; fishing areas ; temperature
    Repository Name: AquaDocs
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    Format: application/pdf
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    Format: 13-14
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  • 7
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    In:  sf@vti.bund.de | http://aquaticcommons.org/id/eprint/7239 | 1240 | 2011-11-23 13:49:29 | 7239 | Bundesforschungsanstalt für Fischerei
    Publication Date: 2021-07-01
    Description: Johann Heinrich von Thunen-Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung – Information on Fishery research in 2010
    Keywords: Oceanography ; hydrographic measurements ; commercial fishery ; salinity ; temperature ; depth ; data processing ; hydrographic situation
    Repository Name: AquaDocs
    Type: article , FALSE
    Format: application/pdf
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    Format: 86-87
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  • 8
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    In:  http://aquaticcommons.org/id/eprint/7464 | 704 | 2011-12-07 13:59:59 | 7464 | Fundacion Charles Darwin Foundation
    Publication Date: 2021-07-03
    Keywords: Oceanography ; 1997-98 El Niño ; rainfall ; precipitation ; temperature ; sea temperature ; introduced species ; Galápagos
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 111-20
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  • 9
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    In:  http://aquaticcommons.org/id/eprint/7458 | 424 | 2015-05-30 17:18:50 | 7458 | Centre de Recherches Océanographiques, Côte d'Ivoire
    Publication Date: 2021-07-03
    Description: In this report, vertical distributions of the temperature and horizontal velocity components of the currents, got from the two sections BELIER (305 1'W) and VRIDI (4°O 5'W), carried out once a week during the 1983year, on the Continental shelf of Ivory Coast, are shown.
    Keywords: Fisheries ; Management ; Côte d'Ivoire ; temperature ; current ; continental shelf
    Repository Name: AquaDocs
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    Format: 1-99
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  • 10
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    In:  http://aquaticcommons.org/id/eprint/16610 | 12051 | 2015-04-09 12:36:22 | 16610 | Indian Fisheries Association
    Publication Date: 2021-07-07
    Description: The toxicity of xenobiotic in aquatic ecosystems is influenced by many factors such as ambient temperature, water hardness, pond soil type, etc. In the present study, it was observed that air temperature, water hardness and soil sediment have profound influence on the toxicity of deltamethrin to common carp fry (ay. length 3.5 ± 0.5 cm, ay. weight 0.58 ± 0.25 g); 96h LC(sub)50 values for common carp at 38.07 ± 2.20°C maximum and 27.86 ± 1.22°C minimum air temperature in soft and very hard water were 0.102 and 0.495 µg lˉ¹, respectively. This value had increased significantly to 2.37 and 3.02 µg at 30.55 ± 1.21°C maximum and 26.04 ± 0.61°C minimum air temperature, respectively. When sediment was included, 96h LC(sub)50 at 38.07°C maximum temperature in very hard water was 1.808 µg 1ˉ¹ and this had increased to 8.073 µg 1ˉ¹ when tested at 30.55°C maximum temperature. Due to the 7.5°C increase in maximum and 1.7°C in minimum temperature, toxicity increased significantly. Lower toxicity in very hard water in comparison to soft water may be due to the lower solubility of deltarnethrin and high level of calcium. Adsorption reaction of deltamethrin with clay, humus, FeOOH, MnOOH and particulate organic carbon, and complexation reaction with dissolved organic carbon were responsible for the lowered toxicity in the experiment with sediment. Exposure time had no significant effect on acute toxicity of deltamethrin.
    Keywords: Pollution ; deltamethrin ; pesticids ; common carps ; temperature ; water hardness ; sediment
    Repository Name: AquaDocs
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    Format: application/pdf
    Format: application/pdf
    Format: 31-40
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  • 11
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    In:  http://aquaticcommons.org/id/eprint/18088 | 12051 | 2015-10-01 16:10:43 | 18088 | Society of Fisheries Technologists, India
    Publication Date: 2021-07-05
    Description: Previous authors observed the influence of temperature variations in movement of fishes and noticed better catches in bottom set nets during summer in Tungabhadra reservoir. The present account reports on similar observations in Gobindsagar reservoir.
    Keywords: Fisheries ; seasonal variations ; temperature ; population dynamics ; cathes ; reservoirs ; Gobindsagar ; Bilaspur ; Himachal Pradesh ; India
    Repository Name: AquaDocs
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  • 12
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    In:  http://aquaticcommons.org/id/eprint/8021 | 424 | 2012-03-11 08:47:53 | 8021 | Centre de Recherches Océanographiques, Côte d'Ivoire
    Publication Date: 2021-06-28
    Description: The authors give a picture of the average seasonal hydrographic situations over the Ivorian continental shelf using data provided by 26 cruises carried out from July 1969 to January 1972. They study meteorological conditions and the mechanism of setting of different types of hydrographic seasons defined as follows: a cold period related to an upwelling created by winds July to earlier October and a warm period divided in 2 parts in relation with haline variations: a low salinity period in November and December, and a high salinity period from January to May; this one sometimes cut off by short-timed drops in the temperature. Then precisions are given about seasonal and geographical variations using space-time diagrams: last, depth and intensity of the thermocline are examined.
    Keywords: Atmospheric Sciences ; Ecology ; Oceanography ; Côte d'Ivoire ; Ivorian continental shelf ; seasonal variations ; hydrology ; upwelling ; salinity ; temperature
    Repository Name: AquaDocs
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  • 13
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    Texas Game and Fish Commission | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14200 | 9596 | 2020-08-31 20:32:04 | 14200 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: Hydrographic data as gathered in the field and climatogical data as taken from publications are presented in this report. Air and water temperatures varied little from previous studies. Salinities were found to be higher than in the previous study. This was caused by reduced rainfall and the resulting decrease in fresh water flow from rivers.
    Keywords: Oceanography ; hydrography ; meteorology ; hydrographic data ; climatic data ; temperature ; salinity
    Repository Name: AquaDocs
    Type: book_section
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  • 14
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    In:  http://aquaticcommons.org/id/eprint/19344 | 12051 | 2015-12-24 20:51:13 | 19344 | Indian Fisheries Association
    Publication Date: 2021-06-26
    Description: Effects of various combinations of photoperiod and temperature (NL-NT, LD 15:9-28°C, NL-28°C and LD 15:9 NT) were studied on testicular activity and pituitary gonadotropic cells in Channa punctatus during resting phase of reproductive cycle. Long photoperiod (LD 15:9-28°C) and warm temperature (NL-28°C) regimes were found to be more effective for testicular maturation and secretory activity of gonadotropic cells suggesting testicular maturation via brain-pituitary-testicular axis.
    Keywords: Aquaculture ; Biology ; photoperiod ; temperature ; testes ; gonadotropic cells ; resting phase ; Channa punctatus
    Repository Name: AquaDocs
    Type: article
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    Format: 83-90
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  • 15
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    In:  http://aquaticcommons.org/id/eprint/20871 | 12051 | 2016-07-05 14:50:22 | 20871 | Institute of Oceanography, Nha Trang, Viet Nam
    Publication Date: 2021-07-13
    Description: Hydrologic observations at every 2 hours interval, have been carried out at one non-anchored station in the Nhatrang Bay during daytime of January 31, 1961. A thin surface layer of 20m thickness, susceptible to the temperature diurnal variation, has been found. ln addition, a weak internal movement of water mass, at 50-60m depth, seems to be found also below the station.
    Keywords: Oceanography ; water mass ; salinity ; temperature ; seasonal variations ; Nhatrang Bay ; Vietnam
    Repository Name: AquaDocs
    Type: article
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    Format: application/pdf
    Format: 8-16
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  • 16
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    In:  http://aquaticcommons.org/id/eprint/21949 | 18721 | 2018-01-18 09:32:14 | 21949 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-05
    Description: Fermented sausage is a favorite kind of meat-product that has allocated great proportions of meat consumption in the world. For the first time in Iran in this study the production of Fermented sausage from minced meat of common carp was assessed by means of lactic acid bacteria at different incubating temperatures as 15, 25, and 35˚C. To prepare the fish sausage, common carp mince was grounded and mixed with NaCl (3%), glucose (3%) and lactic acid bacteria at 5 log CFU/g and afterward were incubated for 48 h. During the incubation of fish sausage, microbiological tests, moisture and protein content, and TVB-N were measured. According to the results, the higher temperature of 35˚C stimulated the rapid growth of lactic acid bacteria, resulting in a rapid decline in pH, and consequently suppressed the growth of pseudomonas, Micrococcaceae and Enterobacteriacea.
    Keywords: Biology ; Fisheries ; fish sausage ; common carp ; lactic acid bacteria ; fermentation ; Microbial ; biochemical ; Cyprinus carpio ; application ; Pediococcus pentasaceus ; temperature ; Enterobacteriacea ; Micrococcaceae ; Pseudomonas ; growth ; Iran
    Repository Name: AquaDocs
    Type: article , TRUE
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    Format: 35-46
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  • 17
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    In:  http://aquaticcommons.org/id/eprint/22068 | 18721 | 2018-02-01 09:05:12 | 22068 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-07
    Description: The most important primary producers of rocky shores are macroalgae. The present study investigated the temporal–spatial changes, the percentage of coverage and the influence of abiotic factors on macroalgae on rocky shores of southern Caspian Sea. Ten sampling stations were selected in the natural and artificial rocky shores from Astara to Babolsar. Sampling lasted for one year and took place every 2 months from September 2013 to July 2014 using a 50×50 quadrate sampler. Epibenthic macroalgae consisted of 2 genus, Cladophora and Entromorpha, from green algae and one genus, Laurenica, from red algae. The average water temperature, salinity, pH, dissolved oxygen and water conductivity were 16.48 °C, 9.87ppt, 8.27, 9.89 mg/l and 16.52 m/s, respectively. According to the results, the maximum algal coverage was observed in September (70.50 %) and the minimum coverage was observed in January (21.50 %). Results of one-way ANOVA indicated that the mean of algal coverage in various months of the year were significantly different (P〈0.05). One-way ANOSIM ecosystem similarity test indicated that the coverage rates of the stations were homologous and similar. The results also showed that temperature has a significant effect on macroalgae coverage ratio on rocky shores in the southern Caspian Sea.
    Keywords: Biology ; Ecology ; Caspian Sea ; Rocky shores ; Macro algae ; Temporal ; variations ; percentage ; Astara ; Babolsar ; Iran ; Cladophora ; Entromorpha ; Laurenica ; genus ; temperature ; ecosystem ; algal
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 69-76
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  • 18
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    In:  http://aquaticcommons.org/id/eprint/22133 | 18721 | 2018-06-14 17:59:53 | 22133 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-06-27
    Description: This study was evaluated the influence of different packaging: aerobic, vacuum and sil vacuum on shelf life grass carp (Ctenopharyngodon idella) in refrigerated temperature (4°C) by determine microbiological and chemical characteristics. Results showed that in all treatment PV values did not increase of acceptability limit (10 meq/kg) during the storage and in aerobic packaging values of TVN (30.31±0.79 mg/100 g) that were above of acceptable limits. In sil vacuum and vacuum packaging, values of TBA were at acceptable limits during 15th and 9th days for aerobic packaging. In aerobic packaging, the value of TVC 7.80± 0.34 log cfu/ g in 12thand in all packaging in 15th were not at acceptable limits (9.06± 0.34 log cfu/ g in aerobic, 7.52± 0.26 log cfu/ g in vacuum and 7.04± 0.12 log cfu/ g in sil vacuum). Results indicated that the best shelf-life of grass carp fillets observed in sil vacuum and vacuum packaging in 12thduring, but sil vacuum than the better (p〈0.05).
    Keywords: Biology ; Fisheries ; Vacuum packaging ; Sil vacuum packaging ; Shelf life ; Ctenopharyngodon idella ; temperature ; microbiological ; chemical ; Iran
    Repository Name: AquaDocs
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  • 19
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    In:  http://aquaticcommons.org/id/eprint/18864 | 12051 | 2015-11-26 12:25:29 | 18864 | Bangladesh Fisheries Research Institute
    Publication Date: 2021-07-12
    Description: The study was conducted in collaboration with the ECFC project of the FAO (BGD/97/017) in Cox's Bazar to develop a low cost solar tunnel dryer for the production of high quality marine dried fish. The study areas were Kutubdiapara, Maheshkhali and Shahparirdip under Cox's Bazar district. Three different models of low cost solar dryer were constructed with locally available materials such as bamboo, wood, bamboo mat, hemp, canvas, wire, nails, rope, tin, polythene and net. Size of the dryers were: 20x4x3 ft ; 30x3x3 ft and 65x3x3 ft with the costs of Tk. 3060, 3530, 9600 for dryer 1, 2 and 3, respectively having different models. The drying capacities were 50, 150, 500 kg for dryer 1, 2 and 3 respectively. The average temperature range inside the dryers were 29-43°C, 34-51°C and 37-57°C for dryer 1, 2 and 3 respectively as recorded at 8:30h to 16:30h. The relative humidity were in the ranges of 22-42%, 27-39% and 24-41 % in dryer 1, 2 and 3 respectively. The fish samples used were Bombay duck, Silver Jew fish and Ribbon fish. The total drying time was in the range of 30-42, 28-38 and 24-34 hours to reach the moisture content of 12.3-14.5, 11.8-14.3, and 11.6-14.1% in dryer 1, 2 and 3 respectively. Among these three fish samples the drying was faster in Silver Jew fish followed by Bombay duck and Ribbon fish in all the three dryer.
    Keywords: Fisheries ; design ; construction ; solar dryier ; temperature ; humidity
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  • 20
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    In:  http://aquaticcommons.org/id/eprint/21962 | 18721 | 2018-01-18 10:14:46 | 21962 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-05
    Description: Silver carp fish and Kilka burgers fusion product is a mixture of minced meat , fish , Tofu and Silver carp , flavors , fillers , various herbs and spices .This study was designed to investigate corruption indicators and integrated manner burgers shelf- life during cold storage and was performed at a temperature of -18 ° C to this end , 4 treatments and Tofu burger meat mixed with various percentages of Silver carp was chosen .Indicators of determination include TVN,TBA, was over 4 months of PV at -18 °C was investigated and the results show that the zero – phase testing of volatile nitrogen in meat fish , Tofu , have been rather than in meat, Fish TVN,TBA and ph silver carp h .The changes in peroxide measurements over 4 month s, increase and this increase of 100 % in treatments 1 and Tofu fish used and the greatest increase with 3/53 ±0,057 average increase was significant at the 95 % level (p 〈 0/05) and also total volatile nitrogen increased during 4 months ,treatment and control of phase 1 to 4 out of the standard range . And this increased was significant at 95% for all treatments .Changes in TBA measurements over 4 month has increased ,TBA level in treatment 1 control plots in the first phase of its five standards that limit formaldehyde is 2 milligrams Malone .
    Keywords: Biology ; Fisheries ; Clupeonella cultiventris ; Silver carp ; minced fish ; fish burger consolidated ; indicators ; Chemical ; Kilka ; temperature ; Iran corruption of TVN ; TBA ; PV ; pH
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  • 21
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    In:  http://aquaticcommons.org/id/eprint/22008 | 18721 | 2018-01-21 12:25:04 | 22008 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-06
    Description: In this study, surface water samples were collected monthly from five stations inclduing Nayband Bay, Assaloye, Dayer, Kabgan and Bushehr from December 2012 to June 2013. Sampling stations were chosen according to data being collected during algal bloom caused by Cochlodinium polykrikoides in 2008. A total of 45 genera of phytoplankton belongs to four classes were totally identified accounting for 53 species of Bacilariophyceae, 32 species of Dinophyceae, one genus of Euglenophyceae, and one genus of Cyanophyceae. Bacilariophyceae with 89.5% was the most abundant family followed by Dinophyceae with 9.03%, Cyanophyceae with 1.25 % and Euglenophyceae with 0.22 %, respectively. The highest phytoplankton abundance was observed in Bushehr and Nayband Bay stations. In addition to statistical tests, Shannon (Shanon-Winner) and dominance indices were investigated. The lowest variability for Shannon index (1.90) was recorded in Bushehr Station in comparison with other stations. The highest Shanon index was in Dayer station (2.90) with the increase of diversity in Dinophyceae. Evidence of coastal pollution in Dayer along with nutrient inputs from land might be effective in increasing the Shannon index. At 80-90% simmilarity, the results of Cluster analysis separated Dayer station from other stations. It seems that a part of uniformity in phytoplankton abundance is affected by the mild conditions of ambient temperature. The total diversity of phytoplankton in the study area was low. The relative moderation of temperature seems to have contributed to the dominance of diatoms. Yet, the increased volume dust (as emerged by the increased dusty days per year) and the introduction of its accumulation in the Persian Gulf waters, along with other pollutants on phytoplankton communities might be underlaying factors for the dominace of diatoms in the study area.
    Keywords: Aquaculture ; Biology ; Ecology ; Fisheries ; Phytoplankton ; Red tide ; Bushehr coastal waters ; Persian Gulf ; Iran ; Cochlodinium polykrikoides ; abundance ; temperature
    Repository Name: AquaDocs
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  • 22
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    In:  http://aquaticcommons.org/id/eprint/22101 | 18721 | 2018-02-08 03:06:51 | 22101 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-06-26
    Description: Out of considerable environmental factors, temperature and its possible effects on life stages of Caspian trout investigated by natural incubation (8 ͦC) condition simulation comparing with cold (4 ͦC) and warm (12 ͦC) constant incubation temperatures in 3 well equipped incubators by water recycling systems. Green eggs triple treatments of wild and F1 cultured brooders were incubated. Incubation implemented in dark by using REDD water and DO–pH – temperature digital monitoring ended to yolk sac absorption and entering larval stage. Numbers and diameters of white fiber muscles measured and significant differences considered between three thermal treatments (P〈0.05) in both wild and cultured stocks. The numbers of white fiber muscles in warm treatment by highest means (72.54) and lowest diameter (8.46 micrometer) compared with Cold treatment white fiber muscles diameter (20.59 micrometer) and numbers (50.72) which were the highest diameter and lowest numbers means between treatments. Hatching success stated considerable mortality for cold treatments and 8°C incubator improved the best temperature in wild treatment. Incubation temperature induced significant effect on white fiber muscles stated considerable index for flesh precursor muscles condition which is subject of natural stocks rehabilitation and domestication projects considerations.
    Keywords: Biology ; Fisheries ; Caspian trout ; Temperature ; White fiber muscle ; Domestication ; Stocks rehabilitation ; Salmo trutta caspius ; larvae ; temperature ; Iran
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  • 23
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    In:  http://aquaticcommons.org/id/eprint/22661 | 18721 | 2018-05-09 22:47:49 | 22661 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-08
    Description: In this study, anesthetic effects of five different concentrations of 2-phenoxyethanol (0.2, 0.3, 0.4, 0.5 and 0.6 ml/L) and clove oil (0.50, 0.75, 1.00, 1.25 and 1.50 ml/L) on rainbow trout (Oncorhynchus mykiss) were studied at temperatures 7, 13 and 18ºC. For this purpose, 900 fish (39.08 ± 1.13 g and 15.48 ± 0.21 cm) were used in the experiment. Induction time of 2-phenoxyethanol and clove oil varied between 1.05 and 3.36 min at all concentrations, except for 0.2 ml/L (for 2-phenoxyethanol only) and at every temperature application. Full recovery time occurred between 2.44 and 7.14 min for 2-phenoxyethanol and 3.23 - 6.11 min for clove oil. It was found that full recovery times significantly increased with increase in 2-phenoxyethanol concentrations (r^2=0.81). The same increasing trend was observed in clove oil, but the increase was not strong compared to 2-phenoxyethanol (r^2=0.21). On the other hand, full induction times of 2-phenoxyethanol and clove oil significantly declined with the increase in concentrations (r^2=0.74; r^2=0.84 for 2-phenoxyethanol and clove oil, respectively). Based on the ideal induction (less than 3 min) and recovery (less than 5 min) time criteria, it can be suggested that the most appropriate concentrations for rainbow trout were 0.3, 0.4 and 0.5 ml/L for 2-phenoxyethanol and 0.50, 0.75 and 1.00 ml/L for clove oil.
    Keywords: Aquaculture ; Biology ; Fisheries ; Anesthetic ; Clove oil ; Oncorhynchus mykiss ; Temperature ; 2-phenoxyethanol ; Turkey ; Rainbow Trout ; temperature
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  • 24
    Publication Date: 2021-06-28
    Description: Kutum, Rutilus frisii kutum, is an commercially important fish in the Caspian Sea. The fish enters the rivers leading to the Caspian Sea for spawning. One of these rivers is Shiroud River. In the artificial propagation process of Kutum, different factors are involved in quality and quantity of female broods eggs and also in the best temperature and migration time for spawning. The influence of temperature and migration time on some fecundity indices and fertilization rate of female kutum in Shiroud River was studied in the spawning season. In this study, 90 individual females were studied from February to May 2007. Averages of total length, weight and age were 43.26 cm, 832.08 g, and 4.41 respectively. Results showed that maximum egg diameter (1.86 mm), number of eggs per each gram of body weight (309.12), relative fecundity (56.21) and fertilization rate (95.82 %) were obtained from 5 to 20 April (15.95°C). Maximum ovary weight (201.00 g) and absolute fecundity of eggs (49987.18) were obtained from 6 to 20 March (17.74°C). Relationship between temperature and migration time and fecundity indices was linear and weak.
    Keywords: Biology ; Fisheries ; water ; temperature ; time ; fecundity ; fertilization ; female ; Kutum ; Rutilus frisii kutum ; migratory ; Shiroud River ; Caspian Sea ; Iran
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  • 25
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    In:  http://aquaticcommons.org/id/eprint/21712 | 18721 | 2017-11-27 14:10:47 | 21712 | University of Guilan, Faculty of Natural Resources, Iran
    Publication Date: 2021-06-29
    Description: The effect of temperature on the main feeding parameters of Mnemiopsis leidyi from the southern Caspian Sea was studied in 2002. The clearance rates and daily rations were estimated from laboratory experiments in a wide range of temperatures from 12 to 27 ºC for M. leidyi of 12–17 mm in length. Clearance rate values changed from 52.5 to 107.3 ml ind-1 h-1. The coefficient Q10 in temperature 12 - 20 ºC was higher than that in 20 - 27 ºC (3.81 and 1.91, respectively). The specific daily ration changed from 1.56±0.19 to 0.24±0.05 mg C mg C-1 day-1 when temperature decreased from 27 ºC to 12 ºC. The direct relationship occurred between daily ration and temperature (R2=0.99). The digestion time decreased with temperature rise and did not display any clear relation to quantity of digested food..
    Keywords: Biology ; Fisheries ; temperature ; clearance rate ; daily ration ; digestion ; time ; Mnemiopsis leidyi ; Caspian Sea ; Iran
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  • 26
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    In:  http://aquaticcommons.org/id/eprint/21992 | 18721 | 2018-01-21 11:45:50 | 21992 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-06
    Description: The effect of five different diets consisting of green algae Scenedesmus quadricauda, cereal plant meal (wheat+white+canola+barley), fish food meal, mixed manure powder (chicken manure+cattle manure), and baker's yeast (Saccharomyces cerevisiae) were investigated on fecundity rate, larval development time and body length in freshwater copepod Eucyclops serrulatus. A complete randomized design was employed using an individual gravid female in 50ml vials at 26ºC water temperature. The maximum fecundity was obtained in copepods fed on fish diet (18.6±1.08, eggs /female; mean±SD) followed in order by baker's yeast (17.3±3.19), cereal plant meal (13±2.45), Scenedesmus (9.3±0.41), and mixed manure powder (8.6±0.82). The larval developmental time of copepod E. serrulatus was significantly different in copepods fed on examined diets. The mean shortest naupliar time (8.3±0.81 days) and copepodit time (1.0±0.70 days) were observed in copepods fed on fish food meal with a significant difference compared to other examined treatments. In addition, length and width of naupliar, copepodit, and adult of copepod E. serrulatus increased when copepods fed on fish diet and baker's yeast.
    Keywords: Biology ; Fisheries ; Eucyclops serrulatus ; Fecundity ; Development time ; Body size ; Algal and non-algal ; diets ; Saccharomyces cerevisiae ; Scenedesmus quadricauda ; water ; temperature ; fed ; fish ; food ; Iran
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  • 27
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    In:  http://aquaticcommons.org/id/eprint/22078 | 18721 | 2018-02-01 09:56:50 | 22078 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-06-25
    Description: In this present, response surface methodology was used to investigate the procedure of agar gelling properties from Gracilariopsis persica agarophyte and optimization them formulation. Base on result, three independent variables - alkalinity concentration (2-8%), extraction temperature (90-120°C) and extraction time (45-240 minutes) - in five levels on viscosity and hysteresis temperature were determined that effects of extraction time and temperature on viscosity and hysteresis temperature were significant (p〈0.05). optimum conditions based on the highest viscosity and hysteresis temperature to be for alkalinity concentration, temperature and time extraction 3.2%, 110 °C and 200 minutes, respectively. predicted value were earned 24.7 cP and 65 °C for viscosity and hysteresis temperature, respectively, that were very close to the predicted data and were not statistically different (p〉0.05).
    Keywords: Aquaculture ; Chemistry ; Agar ; Viscosity ; Hysteresis temperature ; Response Surface Methodology ; Gracilariopsis persica ; RSM ; methodology ; temperature ; Iran
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  • 28
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    In:  http://aquaticcommons.org/id/eprint/22139 | 18721 | 2018-07-01 22:24:07 | 22139 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-06-28
    Description: Intelligent food packaging is new packaging which in recent decades has been used in developed countries and is designed to show safety, quality and product security. Given the importance of fishery products at the household food basket, on the other hand, this product is made of quick-corruption to the color indicators on the packaging fillet of rainbow trout used during refrigerator storage. In this research, treatments include common packaging with phenol red indicator and common packaging with bromocresol green indicator. Indicators made of colored reagent phenol red and bromocresol green in matrix low-density polyethylene film were used in bags made of low-density polyethylene produced in the country. For the determine quality were used of the microbial tests (total count bacteria, psychotropic bacteria) and chemical (pH, TVN, TBRSA) at the time of changing the color indicators and also on days zero, 5, 10, 15 and 20 are kept at refrigerator temperature C˚(4±2). Based on the results of the color change indicators and the relationship with chemical and microbial tests have been done by SPSS 18 statistical software. Shelf-life rainbow trout fillet for the treatments of common packaging with phenol red indicator and common packaging with bromocresol green indicator was determined at refrigerator temperature 13 to 14 days.
    Keywords: Fisheries ; Freshness indicator ; Smart packaging ; Rainbow trout ; Colormetric ; Iran reagent ; quality ; fillet ; chemical ; microbial ; temperature ; Iran
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  • 29
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    Leibniz-Institut für Ostseeforschung Warnemünde | Rostock, Germany
    In:  http://aquaticcommons.org/id/eprint/26030 | 20978 | 2018-10-21 01:18:53 | 26030 | Leibniz-Institut für Ostseeforschung Warnemünde
    Publication Date: 2021-07-24
    Description: ENGLISH ABSTRACT: The article summarizes the hydrographic-hydrochemical conditions in the western and central Baltic Sea in 2017. Based on meteorological conditions, the horizontal and vertical distribution of temperature, salinity, oxygen/hydrogen sulphide and nutrients are described on a seasonal scale. For the southern Baltic Sea area, the “cold sum” of the air temperature of 31.7 Kd in Warnemünde amounted to a mild winter in 2014/15 and ranks as 15th warmest winter since the beginning of the record in 1948. The summer “heat sum” of 159.5 Kd ranks on 28th position of the warmest summers over the past 70 years and is slightly above the long-term average of 153.4 Kd. Based on satellite derived Sea Surface Temperature (SST) 2017 was the eleventh-warmest year since 1990 and with 0.24 K slightly above the long-term SST average. March, April and October - December contributed to the average by their positive anomalies. July and August were characterized by negative anomalies. The anomalies reached maximum values of +2 K and -3 K. The situation in the deep basins of the Baltic Sea was mainly coined by beginning stagnation at bottom-near water depths of the eastern Gotland Basin and ongoing ventilation of the upper part 5 of the deep-water above 150 m as a consequence of weak inflows. For the first time within this phase of intensified inflow activity, starting in 2014, the ventilation of the Farö Deep at the Northern Central Basin was registered at the beginning of the year. In the course of 2017 two weak inflows showing total volumes of 210 km^³ (February) and 188 km^³ (October) were registered. In conclusion, the impact of the observed phase of intensified water exchange processes with subsequent consequences for the biogeochemical cycles is weakening.GERMAN ABSTRACT: Die Arbeit beschreibt die hydrographisch-hydrochemischen Bedingungen in der westlichen und zentralen Ostsee für das Jahr 2017. Basierend auf den meteorologischen Verhältnissen werden die horizontalen und vertikalen Verteilungsmuster von Temperatur, Salzgehalt, Sauerstoff/ Schwefelwasserstoff und Nährstoffen mit saisonaler Auflösung dargestellt. Für den südlichen Ostseeraum ergab sich eine Kältesumme der Lufttemperatur an der Station Warnemünde von 31,7 Kd. Im Vergleich belegt der Winter 2016/17 den 15. Platz der wärmsten Winter seit Beginn der Aufzeichnungen im Jahr 1948 und wird als mild klassifiziert. Mit einer Wärmesumme von 159,5 Kd rangiert der Sommer im Mittelfeld der 70jährigen Datenreihe und reiht sich auf Platz 28 der wärmsten Sommer ein. Das Langzeitmittel liegt bei 153,4 Kd. Auf der Grundlage von satellitengestützten Meeresoberflächentemperaturen (SST) war 2017 das elft- wärmste Jahr seit 1990 und mit 0,24 K etwas über dem langfristigen SST-Mittel. März, April und Oktober - Dezember trugen durch ihre positiven Anomalien zum Durchschnitt bei. Juli und August waren durch negative Anomalien gekennzeichnet. Die Anomalien erreichten Höchstwerte von +2 K und -3 K. Die Situation in den Tiefenbecken der Ostsee war im Wesentlichen geprägt durch bodennah einsetzende Stagnation im östlichen Gotland Becken und Belüftung der mittleren Wassersäule oberhalb 150 m im Zuge kleinerer Einströme. Zu Jahresbeginn wurde das im nördlichen Zentralbecken gelegene Farö Tief erstmals innerhalb der aktuellen Einstromphase belüftet. Im Jahresverlauf 2017 wurden zwei weitere schwache Einströme mit Volumina zwischen 210 km³ und 188 km³ im Februar sowie Oktober registriert. Zusammenfassend kann gesagt werden, dass die Auswirkungen der seit 2014 beobachten Phase von verstärkten Wasseraustauschprozessen mit entsprechenden Konsequenzen für die biogeochemischen Kreisläufe abklingen.
    Keywords: Environment ; Oceanography ; Western Baltic Sea ; Central Baltic Sea ; temperature ; salinity ; oxygen/hydrogen sulphide ; nutrients ; Baltic Sea Monitoring Programme
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  • 30
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    In:  http://aquaticcommons.org/id/eprint/21975 | 18721 | 2018-01-18 10:04:44 | 21975 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-05
    Description: In this survey the Physical and Chemical factors were studied in mohammadiye channel extending Eslamshahr, Robat karim and Shahriar cities of Tehran Province during the 2011 in agriculture period (May, June, July, August, September, October) Sampling were done from 5 different stations. The measured factors were temperature,DO, Cl,HCO3,COD,BOD,CO2,Mg,… The analysis of Physical and Chemical factors of Mohammadiye channel water showed that except water temperature, all factors in comparison to the standards were at the standard level, So they are suitable for aquaculture. Due to mean of water temperature that is high from middle of Spring to the end of summer, It is suitable for culture of warmwater fishes and because of low water temperature in the station No1 It is recommended for culture of coldwater fishes by using of 50-70gr of young fishes.
    Keywords: Aquaculture ; Ecology ; Limnology ; Physical ; Chemical ; factors ; Mohammadieye channel ; Aquaculture ; Coldwater ; determination ; temperature ; comparison ; Iran fishes ; warmwater fishes
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  • 31
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    In:  http://aquaticcommons.org/id/eprint/26978 | 25026 | 2020-03-05 01:05:37 | 26978 | National Fisheries Research and Development Institute, Philippines
    Publication Date: 2021-07-24
    Description: The physical parameters of seawater are important determinants of water quality. Heavy metals are components that are naturally present in a considerable amount in the ocean but are observed to be rising above the allowable level due to pollution outputs of industrialization. Heavy metal contamination is among the environmental pollution problems that the world faces. Additionally, hydrogen sulfide (H2S) is also a toxic compound that accumulates in the ocean floor posing threat to the marine organisms when present in high concentrations. The objective of this study is to document the distribution of temperature and salinity in the water column, heavy metals (Pb, Cd, Hg) and sediment H2S in Manila Bay from 2012 to 2015. Stratification in the bay was generally a factor of salinity and less of temperature. Stratification due to salinity was consistently observed in September with the halocline occurring around 10 m to 15 m. Most of the time, the bay had evenly distributed temperatures, but the slightly higher temperatures were usually recorded near the coast. Inverse trends were observed for the salinity and temperature of the bay. Pb, Cd, and Hg concentrations in the bay occasionally exceeded the permissible limits especially the lead concentration in January 2013 (ave: 809.81 µg/L), March 2013 (ave: 1102.88 µg/L) and November 2015 (1507.50 µg/L). Cd and Hg concentrations were generally below the permissible limit and the reported limit of analysis. H2S concentration ranged from 〈 4 mg/kg to 9.99 mg/kg for all the survey months. Distribution was higher in the northwestern part and southeastern areas of the bay.
    Keywords: Chemistry ; Ecology ; Environment ; Fisheries ; Manila bay ; salinity ; temperature ; heavy metal ; hydrogen sulfide
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  • 32
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    In:  http://aquaticcommons.org/id/eprint/2202 | 8 | 2011-09-29 19:28:19 | 2202 | Inter-American Tropical Tuna Commission
    Publication Date: 2021-07-12
    Description: ENGLISH: Distributions of salinity, temperature, and oxygen in the Gulf of Nicoya based on approximately bimonthly surveys between the period March 1952 to December 1957 have been examined.SPANISH: Se examinó la distribución de la salinidad, temperatura y oxígeno en el Golfo de Nicoya, sobre la base de observaciones aproximadamente bimensuales efectuadas de marzo de 1952 a diciembre de 1957.
    Description: This article is bilingual and contains both Spanish and English translations.
    Keywords: Fisheries ; Oceanography ; Gulf of Nicoya ; salinity ; temperature ; oxygen ; Golfo de Nicoya ; salinidad ; temperatura ; oxígeno
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  • 33
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    In:  http://aquaticcommons.org/id/eprint/2609 | 8 | 2011-09-29 18:46:40 | 2609 | Inter-American Tropical Tuna Commission
    Publication Date: 2021-06-26
    Description: ENGLISH: 1. Quantitative phytoplankton samples were collected by the Inter-American Tropical Tuna Commission at the surface and ten meters in the Gulf of Panama, as follows: a) 18-21 March, 1958 (31 stations)-during the height of the upwelling season, b) 10-12 July, 1957 (10 stations)-during the transition to the rainy season at a time when mild upwelling winds reappear, c) 7-8 November, 1957 (15 stations)-during the height of the rainy season. 2. Maximum phytoplankton populations occurred during the upwelling season, followed by a considerable decline during July, and a further Subsidence during November. 3. A remarkable regional uniformity in species composition was observed during the surveys despite regional differences in growth conditions. Diatoms overwhelmingly dominated the communities. 4. During all surveys, the innermost regions, generally north of 8°30'N, were the most productive. The least productive areas were in the offing of San Miguel Bay and Parita Bay, suggesting that nutrient accretion via runoff is inadequate to sustain sizeable autotrophic plant populations in those regions. 5. During all surveys, phytoplankton growth appeared to be limited by nutrient availability. 6. During all surveys, phytoplankton growth appeared to be related to depth of the water column. 7. Although below average rainfall contributed to unusually favorable growth conditions (reduced stability, increased transparency and, presumably, nutrient reserves) during the November survey relative to November 1955 and 1956 at 8°45'N, 79°23'W, the anticipated heightened phytoplankton response was not observed. 8. During the November survey, the local diatom responses and their regional fluctuations could be satisfactorily related to the accompanying surface salinity conditions. However, this correspondence is undoubtedly attributable to factors associated with the observed salinity levels, probably nutrients, rather than salinity directly. 9. Unusually warm conditions occurred during the March survey, attributable to considerably weaker upwelling winds than normally occurring then, which contributed to a considerably lower standing crop and a retardation in succession of three to five weeks relative to that observed during 1955-1957 at 8°45'N, 79°23'W in the Gulf of Panama. 10. During the March survey, a well defined inverse relationship existed between mean temperature and mean diatom abundance in the upper ten meters, and between transparency and mean diatom abundance. A direct relationship occurred between surface salinity and mean diatom abundance in the upper ten meters. These relationships are interpreted to indicate that diatom abundance primarily reflected the nutrient concentrations associated with a given upwelling intensity, rather than describing casual relationships. 11. The survey results indicate that the phytoplankton dynamics observed at 8°45'N, 79°23'W from November, 1954 through May, 1957 are generally representative of the Gulf of Panama. 12. The following new forms, to be described in a later publication, were observed during the surveys: Actinoptychus undulatus f. catenata n.f., Asterionella japonica f. tropicum n.f., Leptocylindrus maximus n. sp., Skeletonema costatum f. tropicum n.f.SPANISH: 1. La Comisión Interamericana del Atun Tropical recolectó en el Golfo de Panama muestras cuantitativas de fitoplancton en la superficie y a los diez metros, como sigue: a) Del 18 al 21 de marzo de 1958 (31 estaciones)-durante el maximum de la estación de afloramiento. b) Del 10 al 12 de julio de 1957 (10 estaciones)-durante la epóca de transición a la estación lluviosa cuando reaparecen los vientos ligeros que causan el afloramiento. c) Del 7 al 8 de noviembre de 1957 (15 estaciones)-durante el maximum de la estación lluviosa. 2. Las poblaciones maximas de fitoplancton aparecieron durante la estación de afloramiento, seguido por una considerable disminución durante el mes de julio y una calma durante noviembre. 3. Durante la investigación se observó una remarcable uniformidad regional en la composición de las especies a pesar de las diferencias regionales en las condiciones de crecimiento. Las diatomeas predominaban en gran numero en las comunidades. 4. Durante todas las investigaciones, las regiones mas cerca de la costa, generalmente al norte de los 8°30'N, eran las mas productivas. Las areas menos productivas fueron las mar afuera de las Bahias de San Miguel y Parita, lo que sugiere que el aumento en las sales nutritivas causado por las escorrentias es inadecuado para sostener poblaciones grandes de plantas autotróficas en estas regiones. 5. Durante todas las investigaciones, el crecimiento del fitoplancton parecio estar limitado por la disponibilidad de las. sales nutritivas. 6. Durante todas las investigaciones el crecimiento del fitoplancton parecio estar relacionado con la profundidad de la columna de agua. 7. Aunque las precipitacion por debajo del promedio normal contribuyo a condiciones desusadamente favorables de crecimiento (estabilidad reducida, aumento de la transparencia y, presumiblemente, de la reserva de sales nutritivas) durante la investigación de noviembre en relación a noviembre de 1955 y de 1956 en los 8°45'N, 79°23'W, no se observo-la alta reacción de fitoplancton que se esperaba. 8. Durante la investigación de noviembre, las reacciones locales de las diatomeas y sus fluctuaciones regionales pudieron relacionarse en forma satisfactoria con condiciones asociadas con la salinidad de la superficie. Sin embargo, esta correspondencia puede atribuirse sin duda a factores asociados con los niveles observados de salinidad, probablemente con las sales nutritivas, en lugar de directamente con la salinidad. 9. Condiciones calurosas no comunes ocurrieron durante la investigación de marzo, las que pueden atribuirse a que los vientos que ocasionan el afloramiento fueran mas debiles que los normales, lo que contribuyó a que la cosecha estable fuera considerablemente mas baja y a la demora de tres a cinco semanas en la sucecion relativa a la que se observó durante 1955-1957 en los 8°45'N, 8°23'W, en el Golfo de Panama. 10. Durante la investigación de marzo, existió una relación inversa bien definida entre la temperatura y la abundancia media de las diatomeas en los diez metros superiores, y entre la transparencia y la abundancia media de las diatomeas. Una relación directa ocurrio entre la salinidad de superficie y la abundancia media de las diatomeas en los diez metros superiores. Estas relaciones se interpretan como indicadoras de que la abundancia de diatomeas refleja primeramente las concentraciones de las sales nutritivas asociadas con una intensidad de afloramiento dada, en lugar de describir relaciones causales. 11. Los resultados de la investigacion indican que la dinamica del fitoplancton observada en los 8°45'N, 79°23'W, desde noviembre de 1954 a mayo de 1957, es generalmente representativa del Golfo de Panama. 12. Durante las investigaciones se observaron las siguientes formas nuevas, las que seran descritas en una publicación posterior: Actinoptychus undulatus f. catenata n.f., Asterionella japonica f. tropicum n.f., Leptocylindrus maximus n. sp., Skeletonema costatum f. tropicum n.f.
    Description: The summary of this article is bilingual and contains both Spanish and English translations. The article is in English only.
    Keywords: Oceanography ; Fisheries ; phytoplankton ; temperature ; salinity ; Gulf of Panama ; fitoplancton ; temperatura ; salinidad ; Golfo de Panamá
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    California Department of Fish and Game | Terminal Island, CA
    In:  http://aquaticcommons.org/id/eprint/2439 | 8 | 2011-09-29 19:02:54 | 2439 | California Department of Fish and Game
    Publication Date: 2021-07-13
    Description: (PDF contains 6 pages.)
    Keywords: Fisheries ; Biology ; Brookings ; Oregon ; Avila ; California ; pink shrimp ; Pandalus jordani ; cruise report ; N. B. Scofield ; temperature
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    Type: monograph
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    California Department of Fish and Game, Marine Resources Operations | Terminal Island, CA
    In:  http://aquaticcommons.org/id/eprint/2556 | 8 | 2011-09-29 18:52:55 | 2556 | California Department of Fish and Game
    Publication Date: 2021-06-25
    Description: (PDF contains 7 pages.)
    Keywords: Ecology ; Fisheries ; Oceanography ; Biology ; Cape Ferrelo ; Oregon ; Pt. Sal ; Santa Barbara County ; California ; pink shrimp ; Pandalus jordani ; sex ratios ; population ; escapement ; temperature ; salinity ; cephalopods
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  • 36
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    In:  http://aquaticcommons.org/id/eprint/1962 | 3 | 2011-09-29 19:52:02 | 1962 | Aquatic Plant Management Society, Inc.
    Publication Date: 2021-07-11
    Description: During the summer of 1997, we surveyed 50 waterbodiesin Washington State to determine the distribution of theaquatic weevilEuhrychiopsis leconteiDietz. We collected dataon water quality and the frequency of occurrence of watermilfoilspecies within selected watermilfoil beds to comparethe waterbodies and determine if they were related to thedistribution E. lecontei. We foundE. leconteiin 14 waterbodies,most of which were in eastern Washington. Only one lakewith weevils was located in western Washington. Weevils wereassociated with both Eurasian (Myriophyllum spicatumL.) andnorthern watermilfoil (M. sibiricumK.). Waterbodies withE.leconteihad significantly higher (P〈 0.05) pH (8.7±0.2)(mean±2SE), specific conductance (0.3±0.08 mS cm-1) andtotal alkalinity (132.4±30.8 mg CaCO3L-1). We also foundthat weevil presence was related to surface water temperatureand waterbody location ( = 24.3,P≤0.001) and of allthe models tested, this model provided the best fit (Hosmer-Lemeshow goodness-of-fit = 4.0,P= 0.9). Our results suggestthat in Washington StateE. leconteioccurs primarily ineastern Washington in waterbodies with pH≥8.2 and specificconductance≥0.2 mS cm-1. Furthermore, weevil distributionappears to be correlated with waterbody location (easternversus western Washington) and surface water temperature.
    Description: July 2000 Special Issue: The Use of Native Insect Herbivores for the Management of Eurasian Watermilfoil
    Keywords: Management ; Biology ; Limnology ; Euhrychiopsis lecontei ; Myriophyllum spicatum ; Myriophyllum sibiricum ; weevil presence ; temperature ; pH ; Washington ; USA ; Eurasian watermilfoil
    Repository Name: AquaDocs
    Type: article
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  • 37
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    In:  http://aquaticcommons.org/id/eprint/3603 | 424 | 2011-09-29 17:07:01 | 3603 | Fisheries Society of Nigeria
    Publication Date: 2021-06-28
    Description: This study examines zooplankton periodicity and some physicochemical parameters of the intake channel of Lake Chad (Nigeria). Nine different zooplankton species were identified at the sampling station 1, while seven different zooplankton species were identified at the sampling station 2 (the intake channel of Lake Chad). Each identified zooplankton species was grouped according to its major group of copepods, Cladocera or Rotifera. The copepods dominated the zooplankton community with the highest numbers of occurrence as Cyclopedia species throughout the course of the study at both station l and 2. There was a clear evidence of the influence of organic manure nutrients on total zooplankton population at station 1 when compared to that of station 2. The water quality variables measured in the course of this study show that the surface water temperature in station 1 ranges from 27.5 degree C to 30.5 degree C. The pH ranges from 6.8 to 8.5, while D.O. contents ranges from 2.9mg/L to 6.1mg/L and alkalinity recorded was 172.00 to 208.00. At the station 2 the water quality parameters obtained show that surface water temperature ranges from 27.3 degree C to 30.2 degree C, pH ranges between 6.9 to 8.5, while the D.O contents ranges from 3.0 mg/L to 6.2 mg/L.Alkalinity ranges from 172mg/L to 212 mg/L
    Keywords: Biology ; Nigeria ; Lake Chad ; community composition ; dissolved oxygen ; freshwater lakes ; physicochemical properties ; seasonal variations ; temperature ; zooplankton ; Cladocera ; Copepoda ; Rotifera
    Repository Name: AquaDocs
    Type: conference_item
    Format: application/pdf
    Format: application/pdf
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  • 38
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    Inter-American Tropical Tuna Commission | La Jolla, CA
    In:  http://aquaticcommons.org/id/eprint/3574 | 8 | 2011-09-29 17:11:08 | 3574 | Inter-American Tropical Tuna Commission
    Publication Date: 2021-06-27
    Description: The interests of the Inter-American Tropical Tuna Commission in the hydrography and biology of the Gulf of Panama have been adequately stated in the Commission's Bulletin series (Forsbergh, 1963; Howard, 1954; Howard and Landa, 1958; Peterson, 1961; Schaefer, 1953; Schaefer and Bishop, 1958; Schaefer, Bishop and Howard, 1958). The present report deals with data collected on 10 surveys made by Tuna Commission personnel for the purpose of describing seasonal upwelling by means of a study of the temperature structure of the Gulf of Panama, and a comparison of the thermal pattern during the dry, upwelling season (January to April) with that of the rainy season (May to December).Considerations of upwelling in the Gulf have been shown to be of interest and of probable biological consequence by Schaefer (1951) and by Simpson (1959). (PDF contains 60 pages.)
    Keywords: Oceanography ; temperature ; upwelling ; Gulf of Panama
    Repository Name: AquaDocs
    Type: monograph
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  • 39
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    In:  http://aquaticcommons.org/id/eprint/8055 | 424 | 2012-03-09 08:56:56 | 8055 | Centre de Recherches Océanographiques, Côte d'Ivoire
    Publication Date: 2021-06-28
    Description: A cruise of the R. V. Capricorne in May 1973, in inner part of the gulf of Guinea, allowed the authors to identify the main part of the Atlantic circulation at the longitude of 5 degrees E, between 4 degrees N and 4 degrees S. It gave new data on the termination of the equatorial undercurrent. At the equator, under the westward south equatorial current flows the Atlantic equatorial undercurrent with a maximum eastward velocity of 90 cm/sec at 30 m depth linked to a salinity maximum higher than 36.20 ppt. Below the equatorial undercurrent, about 80-100 m depth, flows a westward current with a velocity as high as 30 cm/sec. At 4 degrees S, the south equatorial countercurrent is well delineated by a high salinity core (more than 36.10 ppt) at 30 m depth with an eastward velocity core of 40 cm/sec. On the contrary, near 3 degrees 30N, a high salinity core (36.10 ppt) flows westwards with a speed of 40 cm/sec at 40 m depth: it is the "return flow" of the undercurrent (Hisard and Moliere 1974). At 4 degrees N the Guinea current carries eastwards surface salinities of 34.50 ppt at 40 cm/sec. Off Cape Lopez (0 degrees 35'S-8 degrees 42'E) the high salinity core of the undercurrent becomes wider near the shore. It is 25m wide offshore, and 70 m wide near the cape. A part of undercurrent water extends northwards, then flows westwards with the subsurface westward circulation in the inner part of the Gulf of Guinea. Another part flows south-southwestwards in a high salinity tongue along the African coast to 4 degrees S. South-west of Cape Lopez, the trades divergence contributes to an upwelling of cold and high salinity water; this water increases at the Cape Lopez front.
    Keywords: Atmospheric Sciences ; Oceanography ; Gulf of Guinea ; currents ; water circulation ; salinity ; temperature ; upwelling
    Repository Name: AquaDocs
    Type: article
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    Format: application/pdf
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  • 40
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    In:  foe@vti.bund.de | http://aquaticcommons.org/id/eprint/6090 | 1240 | 2012-11-14 14:22:58 | 6090 | Bundesforschungsanstalt für Fischerei
    Publication Date: 2021-07-13
    Description: Johann Heinrich von Thunen-Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung – Information on Fishery research in 2010
    Keywords: Aquaculture ; mortality ; abiotic factors ; eel stocking ; intensive farming ; temperature ; salinity
    Repository Name: AquaDocs
    Type: article , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 245-246
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  • 41
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    In:  osf@vti.bund.de | http://aquaticcommons.org/id/eprint/7163 | 1240 | 2011-11-17 13:09:20 | 7163 | Bundesforschungsanstalt für Fischerei
    Publication Date: 2021-06-30
    Description: Johann Heinrich von Thunen-Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung – Information on Fishery research in 2010
    Keywords: Environment ; Fisheries ; Oceanography ; abiotic factors ; salinity ; temperature ; oxygen concentration ; Baltic Sea ; hydrographic data
    Repository Name: AquaDocs
    Type: article , FALSE
    Format: application/pdf
    Format: application/pdf
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  • 42
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    In:  http://aquaticcommons.org/id/eprint/7457 | 424 | 2015-05-30 17:19:55 | 7457 | Centre de Recherches Océanographiques, Côte d'Ivoire
    Publication Date: 2021-07-03
    Description: The Centre de Recherches Océanographiques d'Abidjan has carried out the HYDROBIOCLIMAT program in order to study the seasonal and interannual fluctuations of the physical and biological parameters over the continental shelfof Ivory Coast ; two subsurface moorings with from one to three AANDERAA current meters fixed on the lines, were deployed in front of Abidjan and San Pedro.Temperature and current measurement records are presented at these two locations.
    Keywords: Fisheries ; Management ; Côte d'Ivoire ; temperature ; current ; seasonal variations ; mooring
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 1-136
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  • 43
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    In:  http://aquaticcommons.org/id/eprint/20870 | 12051 | 2016-07-05 14:55:39 | 20870 | Institute of Oceanography, Nha Trang, Viet Nam
    Publication Date: 2021-09-18
    Description: Results obtained from the first deep water study of the Bay are exposed here. In particular, a weak upwelling is noted near the South-West part of the Tague Island
    Keywords: Oceanography ; hydrography ; temperature ; salinity ; water masses ; water transparency ; turbidity ; Cam-Ranh Bay ; Vietnam
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 17-21
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  • 44
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    In:  http://aquaticcommons.org/id/eprint/7455 | 424 | 2012-01-05 13:01:55 | 7455 | Centre de Recherches Océanologiques, Côte d'Ivoire
    Publication Date: 2021-09-24
    Description: In this report, accurate data from coastal stations and from the Vridi hydrological station were gathered. The used experiments took place from 1989 to 1991.
    Keywords: Biology ; Fisheries ; Management ; Côte d'Ivoire ; Vridi hydrological station ; coastal stations ; temperature ; salinity ; data collection
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 1-68
    Format: 68
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  • 45
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    In:  http://aquaticcommons.org/id/eprint/7485 | 424 | 2012-01-05 13:03:40 | 7485 | Centre de Recherches Océanologiques, Côte d'Ivoire
    Publication Date: 2021-09-24
    Description: In this report were gathered accurate data from coastal stations and from a hydrological station. The used experiments took place from 1986 to 1988.
    Keywords: Biology ; Fisheries ; Management ; Côte d'Ivoire ; Vridi hydrological station ; coastal stations ; temperature ; salinity ; data collection
    Repository Name: AquaDocs
    Type: article
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  • 46
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    In:  http://aquaticcommons.org/id/eprint/16757 | 12051 | 2015-04-24 07:26:51 | 16757 | National Aquatic Resources Research and Development Agency, Sri Lanka
    Publication Date: 2021-07-08
    Description: Salinity and temperature in the sea surface of the Jaffna Lagoon were observed from August 1967 to July 1968. Peak surface temperatures were recorded during April and the lowest temperature recorded was in December. The seasonal variations of surface temperature closely followed a similar pattern in all locations of the lagoon. Salinity values in the lagoon surface were very high during the period from May to August and were relatively low during the period from October to December. Monsoon, rainfall, exchange of water between the lagoon and the sea and within the lagoon, and the currents in the Palk Bay might have been the factors which influenced the salinity structure of the surface waters of the lagoon during this period.
    Description: Department of Fisheries, Fisheries Research Station, Ceylon now incorporated in: National Aquatic Resources Research and Development Agency, Sri Lanka
    Keywords: Ecology ; salinity ; salinity effects ; temperature effects ; temperature ; variations ; surface waters ; Jaffna Lagoon ; Sri Lanka
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 87-99
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  • 47
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    In:  http://aquaticcommons.org/id/eprint/17105 | 12051 | 2015-05-28 10:57:17 | 17105 | Instituto de Investigação Pesqueira, Mozambique
    Publication Date: 2021-07-10
    Description: The primary objectives of this data summary are to display features of the distribution of hydrographic and chemical parameters in the Mozambique Channel in a form which will be useful for oceanographers, and to serve as a basis for the processing of more recent data obtained since 1977.
    Description: Instituto de Desenvolvimento Pesqueiro, Maputo, Mozambique now incorporated in: Instituto de Investigação Pesqueira, Mozambique
    Keywords: Oceanography ; bathymetric charts ; hydrographic data ; oxygen ; oceanographic data ; salinity ; temperature ; Mozambique Channel
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
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  • 48
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    In:  http://aquaticcommons.org/id/eprint/18134 | 17255 | 2015-10-06 13:49:36 | 18134 | Institute of Oceanography, Nha Trang, Viet Nam
    Publication Date: 2021-07-05
    Description: In this paper, some results of analyzing the hydrographic characteristics of theseawater temperature and salinity are presented. The received results showed that: in dry season, the influence of the Cai river water has is limited in Cai river estuary with the approximate transferable distance from the river mouth to the open sea of about 1 km. The isohaline 32%o could be defined as the separate boundary of the Cai river water; In rainy season, due to the river water discharges are high, the influence of Cai river water could be transferred to the open sea and island areas. The immerge of the Cai river water in the open sea areas in rainy season has changed the vertical structure of salinity and temperature in the northern part of Nhatrang bay. In both seasons, the Cai river water have influenced in the surface water layers 0 - 2m and the water layers deeper than 2m are influenced by the sea waters with the salinity of higher than 32%o.
    Keywords: Oceanography ; Vietnam ; Nhatrang bay ; Cai river estuary ; hydrographic characteristic ; seawater ; temperature ; salinity
    Repository Name: AquaDocs
    Type: article
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    Format: application/pdf
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  • 49
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    In:  http://aquaticcommons.org/id/eprint/17962 | 12051 | 2015-09-29 11:54:58 | 17962 | Society of Fisheries Technologists, India
    Publication Date: 2021-07-03
    Description: Development of a portable self-contained electronic meter for on the spot determination of temperature and salinity is described. Instant and remote measurements of temperature and salinity of sea and estuarine waters in the range of 25-30°C and 30-35°C for temperature with an accuracy ± 0.05°C and 0-37‰ and 31-37‰ for salinity with an accuracy of ± 0.2‰ and ± 0.05‰ respectively are possible with the instrument. The temperature compensations of the salinity measurements are done manually with the help of temperature charts. The temperature and salinity measurements can be fed to continuous recorders.
    Keywords: Fisheries ; temperature ; salinity ; electronic measurements ; sea waters ; estuarine waters ; fishing activities
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    Type: article
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    Format: application/pdf
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  • 50
    Publication Date: 2021-09-29
    Description: Infrared thermography (IRT) is a non-invasive, contactless tool for measuring the thermal radiation emitted from an object’s surface. Combined with advancements in remotely piloted aircraft systems (RPAS, commonly “drones”), IRT is being used for detection, counting, and physiological studies of marine mammals. Critically endangered North Atlantic right whales (NARWs, Eubalaena glacialis) were observed in Cape Cod Bay, United States in 2017–2018 with RPAS-based IRT. We discuss four applications of RPAS-based IRT to study the thermal physiology of large whales: 1) exploring patterns of cranial heat loss; 2) tracking subsurface individuals in real-time using thermal “footprints” – cold surface water anomalies resulting from fluke upstrokes; 3) diagnosing pathology or detecting natural changes in superficial blood circulation; and 4) measuring blowhole temperatures as a proxy for internal body temperatures and possibly health of individual whales. IRT of NARW rostra demonstrated that the peri-callosity epithelium radiates more heat than other superficial cranial tissues; we hypothesize that the source of this heat is the underlying corpus cavernosum maxillaris. Thermal footprints were most visible on calm, sunny days, likely due to thermal stratification of the upper water column. A diffuse patch of heat on the caudal dorsum of one NARW may have been indicative of superficial changes in blood flow, potentially associated with pathology or heat dissipation. Finally, we emphasize the need to properly calibrate IRT data before interpreting temperatures of blowholes, although we do believe this technology could be used to approximate near-core body temperatures in the future. RPAS-based IRT presents a new, important opportunity to study and monitor large whales, particularly endangered species like NARWs. Despite the challenges of using aerial IRT in aquatic environments, we believe its applications in marine mammal research will continue to diversify.
    Description: This project was funded by National Marine Fisheries Service grant, NA14OAR4320158 and the North Pond Foundation.
    Keywords: drone ; cetacean ; health ; temperature ; right whale
    Repository Name: Woods Hole Open Access Server
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  • 51
    Publication Date: 2020-12-18
    Description: High resolution temperature profiles (HRTP) have been derived from measurements performed by Global Ozone Monitoring by Occultation of Stars (GOMOS) onboard ENVISAT. HRTP are derived from measurements with two fast photometers whose signal is sampled at 1 kHz, and allows investigating the role of irregularities in the density and temperature profiles, such as those associated with gravity waves. In this study high resolution temperature and density profiles measured at high latitude by GOMOS are compared with observations made with the ground-based aerosol/temperature LIDAR at Thule, Greenland. The LIDAR at Thule contributes to the Network for the Detection of Atmospheric Composition Change. The LIDAR profiles are analyzed in the height interval overlapping with GOMOS data (22-35 km), and the density and temperature profiles are obtained with 250 m vertical resolution. The comparison is focused on data collected during the 2008-2009 and 2009-2010 Arctic winters. Profiles measured within 6 hours and 500 km are selected. The profiles are classified based on spatial and temporal variability of dynamical indicators over Thule and at the GOMOS tangent height position. Several corresponding features can be identified in the GOMOS and LIDAR profiles, suggesting that the GOMOS HRTP could be used to investigate the global distribution of small scale fluctuations. As an example, two cases corresponding to inner and outer vortex conditions during the 2008-2009 winter are discussed, also in relation with the very intense sudden stratospheric warming occurred in this season.
    Description: Published
    Description: New Zealand
    Description: 5A. Ricerche polari e paleoclima
    Keywords: stratosphere ; temperature ; GOMOS ; 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 52
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Romagnoni, G., Kvile, K. o., Dagestad, K., Eikeset, A. M., Kristiansen, T., Stenseth, N. C., & Langangen, O. Influence of larval transport and temperature on recruitment dynamics of North Sea cod (Gadus morhua) across spatial scales of observation. Fisheries Oceanography, (2020): 1-16, doi:10.1111/fog.12474.
    Description: The survival of fish eggs and larvae, and therefore recruitment success, can be critically affected by transport in ocean currents. Combining a model of early‐life stage dispersal with statistical stock–recruitment models, we investigated the role of larval transport for recruitment variability across spatial scales for the population complex of North Sea cod (Gadus morhua ). By using a coupled physical–biological model, we estimated the egg and larval transport over a 44‐year period. The oceanographic component of the model, capable of capturing the interannual variability of temperature and ocean current patterns, was coupled to the biological component, an individual‐based model (IBM) that simulated the cod eggs and larvae development and mortality. This study proposes a novel method to account for larval transport and success in stock–recruitment models: weighting the spawning stock biomass by retention rate and, in the case of multiple populations, their connectivity. Our method provides an estimate of the stock biomass contributing to recruitment and the effect of larval transport on recruitment variability. Our results indicate an effect, albeit small, in some populations at the local level. Including transport anomaly as an environmental covariate in traditional stock–recruitment models in turn captures recruitment variability at larger scales. Our study aims to quantify the role of larval transport for recruitment across spatial scales, and disentangle the roles of temperature and larval transport on effective connectivity between populations, thus informing about the potential impacts of climate change on the cod population structure in the North Sea.
    Description: G.R. was supported by the Norden Top‐level Research Initiative sub‐programme “Effect Studies and Adaptation to Climate Change” through the Nordic Centre for Research on Marine Ecosystems and Resources under Climate Change (NorMER). K.Ø.K. was supported by the WHOI John H. Steele Post‐doctoral Scholar award and VISTA – a basic research program in collaboration between The Norwegian Academy of Science and Letters, and Equinor. We thank an anonymous referee for valuable comments that substantially improved the article.
    Keywords: Atlantic cod ; biophysical model ; larval transport ; North Sea ; populations ; stock–recruitment ; temperature
    Repository Name: Woods Hole Open Access Server
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: Diatom TPC parameters
    Description: Thermal niche, as calculated from the Thermal Performance Curve (TPC), across three light levels for seven strains of a marine diatom Chaetoceros sp. isolated from Narragansett Bay March 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782839
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Chaetoceros ; Psychrophile ; Light Sensitivity ; Eppley-Norberg Curve ; temperature ; Narragansett Bay
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 54
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wong, A. P. S., Wijffels, S. E., Riser, S. C., Pouliquen, S., Hosoda, S., Roemmich, D., Gilson, J., Johnson, G. C., Martini, K., Murphy, D. J., Scanderbeg, M., Bhaskar, T. V. S. U., Buck, J. J. H., Merceur, F., Carval, T., Maze, G., Cabanes, C., Andre, X., Poffa, N., Yashayaev, I., Barker, P. M., Guinehut, S., Belbeoch, M., Ignaszewski, M., Baringer, M. O., Schmid, C., Lyman, J. M., McTaggart, K. E., Purkey, S. G., Zilberman, N., Alkire, M. B., Swift, D., Owens, W. B., Jayne, S. R., Hersh, C., Robbins, P., West-Mack, D., Bahr, F., Yoshida, S., Sutton, P. J. H., Cancouet, R., Coatanoan, C., Dobbler, D., Juan, A. G., Gourrion, J., Kolodziejczyk, N., Bernard, V., Bourles, B., Claustre, H., D'Ortenzio, F., Le Reste, S., Le Traon, P., Rannou, J., Saout-Grit, C., Speich, S., Thierry, V., Verbrugge, N., Angel-Benavides, I. M., Klein, B., Notarstefano, G., Poulain, P., Velez-Belchi, P., Suga, T., Ando, K., Iwasaska, N., Kobayashi, T., Masuda, S., Oka, E., Sato, K., Nakamura, T., Sato, K., Takatsuki, Y., Yoshida, T., Cowley, R., Lovell, J. L., Oke, P. R., van Wijk, E. M., Carse, F., Donnelly, M., Gould, W. J., Gowers, K., King, B. A., Loch, S. G., Mowat, M., Turton, J., Rama Rao, E. P., Ravichandran, M., Freeland, H. J., Gaboury, I., Gilbert, D., Greenan, B. J. W., Ouellet, M., Ross, T., Tran, A., Dong, M., Liu, Z., Xu, J., Kang, K., Jo, H., Kim, S., & Park, H. Argo data 1999-2019: two million temperature-salinity profiles and subsurface velocity observations from a global array of profiling floats. Frontiers in Marine Science, 7, (2020): 700, doi:10.3389/fmars.2020.00700.
    Description: In the past two decades, the Argo Program has collected, processed, and distributed over two million vertical profiles of temperature and salinity from the upper two kilometers of the global ocean. A similar number of subsurface velocity observations near 1,000 dbar have also been collected. This paper recounts the history of the global Argo Program, from its aspiration arising out of the World Ocean Circulation Experiment, to the development and implementation of its instrumentation and telecommunication systems, and the various technical problems encountered. We describe the Argo data system and its quality control procedures, and the gradual changes in the vertical resolution and spatial coverage of Argo data from 1999 to 2019. The accuracies of the float data have been assessed by comparison with high-quality shipboard measurements, and are concluded to be 0.002°C for temperature, 2.4 dbar for pressure, and 0.01 PSS-78 for salinity, after delayed-mode adjustments. Finally, the challenges faced by the vision of an expanding Argo Program beyond 2020 are discussed.
    Description: AW, SR, and other scientists at the University of Washington (UW) were supported by the US Argo Program through the NOAA Grant NA15OAR4320063 to the Joint Institute for the Study of the Atmosphere and Ocean (JISAO) at the UW. SW and other scientists at the Woods Hole Oceanographic Institution (WHOI) were supported by the US Argo Program through the NOAA Grant NA19OAR4320074 (CINAR/WHOI Argo). The Scripps Institution of Oceanography's role in Argo was supported by the US Argo Program through the NOAA Grant NA15OAR4320071 (CIMEC). Euro-Argo scientists were supported by the Monitoring the Oceans and Climate Change with Argo (MOCCA) project, under the Grant Agreement EASME/EMFF/2015/1.2.1.1/SI2.709624 for the European Commission.
    Keywords: global ; ocean ; pressure ; temperature ; salinity ; Argo ; profiling ; floats
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: Synechococcus growth rates
    Description: Growth rates across temperatures for 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782314
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Whole Genome Sequencing ; Synechococcus ; Subcluster 5.2 ; Estuary ; Narragansett Bay ; Eppley-Norberg Curve ; temperature
    Repository Name: Woods Hole Open Access Server
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: Synechococcus TPC parameters
    Description: The thermal niche, as calculated from the Thermal Performance Curve (TPC), for each of 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782308
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Whole Genome Sequencing ; Synechococcus ; Subcluster 5.2 ; Estuary ; Narragansett Bay ; Eppley-Norberg Curve ; temperature
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 57
    Publication Date: 2022-05-26
    Description: Dataset: Diatom growth rates
    Description: Growth rates for seven strains of a marine Chaetoceros sp. isolated from Narragansett Bay March 2018. Growth was measured across six to seven temperatures and three light intensities for each strain For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782814
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Chaetoceros ; Psychrophile ; Light Sensitivity ; Eppley-Norberg Curve ; temperature ; Narragansett Bay
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: Synechococcus fluorescence emission spectra
    Description: Fluorescence spectra from 600-700nm at 530nm excitation for 3 strains of Synechococcus while increasing temperatures to detect the photosystem components disassociation temperature. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782322
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Whole Genome Sequencing ; Synechococcus ; Subcluster 5.2 ; Estuary ; Narragansett Bay ; Eppley-Norberg Curve ; temperature
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 59
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-26
    Description: Dataset: Synechococcus accessions
    Description: NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/782301
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1638804
    Keywords: Whole Genome Sequencing ; Synechococcus ; Subcluster 5.2 ; Estuary ; Narragansett Bay ; Eppley-Norberg Curve ; temperature
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 60
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zakroff, C. J., & Mooney, T. A. Antagonistic interactions and clutch-dependent sensitivity induce variable responses to ocean acidification and warming in squid (Doryteuthis pealeii) embryos and paralarvae. Frontiers in Physiology, 11, (2020): 501, doi:10.3389/fphys.2020.00501.
    Description: Ocean acidification (OA) and warming seas are significant concerns for coastal systems and species. The Atlantic longfin squid, Doryteuthis pealeii, a core component of the Northwest Atlantic trophic web, has demonstrated impacts, such as reduced growth and delayed development, under high chronic exposure to acidification (2200 ppm), but the combined effects of OA and warming have not been explored in this species. In this study, D. pealeii egg capsules were reared under a combination of several acidification levels (400, 2200, and 3500 ppm) and temperatures (20 and 27°C). Hatchlings were measured for a range of metrics [dorsal mantle length (DML), yolk sac volume (YV), malformation, and hatching success] in three trials over the 2016 breeding season (May – October). Although notable resistance to stressors was seen, highlighting variability within and between clutches, reduced DML and malformation of the embryos occurred at the highest OA exposure. Surprisingly, increased temperatures did not appear to exacerbate OA impacts, although responses were variable. Time to hatching, which increased with acidification, decreased much more drastically under warming and, further, decreased or removed delays caused by acidification. Hatching success, while variable by clutch, showed consistent patterns of greater late stage loss of embryos under acidification and greater early stage loss under warming, highlighting the potential difference in timing between these stressors for this system, i.e., that acidification stress builds up and causes impacts over time within the egg capsule as the embryos grow and respire. High OA-exposed hatchlings from the warmer conditions often showed reduced impacts compared to those reared in ambient temperatures. This may be due to the increased developmental rate and subsequently reduced OA exposure time of embryos in the higher temperature treatment. These results indicate a substantive potential plasticity to multiple stressors during the embryonic development of this species of squid, but do not predict how this species would fare under these future ocean scenarios.
    Description: This research was supported by the National Science Foundation Grant No. 1220034 to TM and the National Science Foundation Graduate Research Fellowship under Grant No. 1122374 to CZ.
    Keywords: cephalopod ; hypercapnia ; Myopsida ; temperature ; stress ; multifactor ; malformation
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 61
    Publication Date: 2019-01-28
    Description: Temperature and Salinity historical data collections covering the time period 1900-2013/2014 were created for each European marginal sea (Arctic Sea, Baltic Sea, Black Sea, North Sea, North Atlantic Ocean, and Mediterranean Sea) within the framework of SeaDataNet2 Project and they are available as ODV collections through a web catalog (https://www.seadatanet.org/Products/Aggregated-datasets). Two versions have been published and they represent a snapshot of the SeaDataNet database content at two different times: V1.1 (January 2014) and V2 (March 2015). A Quality Control Strategy (QCS) was developped and continuously refined in order to improve the quality of the database content and create the best data products. The QCS consists of four main phases: 1) data harvesting from the data infrastructure; 2) file and parameter aggregation; 3) secondary quality check analysis; 4) correction of data anomalies. The approach is iterative to facilitate the upgrade of the database content and it allows a versioning of data products. Regional temperature and salinity monthly climatologies have been produced from V1.1 historical data collections and they are also available (https://www.seadatanet.org/Products/Climatologies). Within the new SeaDataCloud Project the release of updated historical data collections and new climatologies is planned. SeaDataCloud novelties are the introduction of decadal climatologies at various resolutions, the development of climatologies for the Global Ocean and a task dedicated to new data products, like Mixed Layer Depth climatologies, Ocean Heat Content estimates, coastal climatologies from HF radar data. All SeaDataCloud products are available through a dedicated web catalogue together with their relative Digital Object Identifier (DOI) and Product Information Document (PIDoc) containing all specifications about product’s generation, quality assessment and technical details to facilitate users’ uptake. The presentation will briefly overview the existing SeaDataNet products and introduce the SeaDataCloud products’ plan, but the main focus will be on the first release (February 2018) of SeaDataCloud Temperature and Salinity historical data collections, spanning the time period 1900-2017, their characteristics in terms of space-time data distribution and their usability.
    Description: SeaDataCloud Project
    Description: Published
    Description: Vienna
    Description: 4A. Oceanografia e clima
    Keywords: data collections ; temperature ; salinity ; european marginal seas ; quality check
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 62
    Publication Date: 2016-01-20
    Description: The final identity and functional properties of a neuron are specified by terminal differentiation genes, which are controlled by specific motifs in compact regulatory regions. To determine how these sequences integrate inputs from transcription factors that specify cell types, we compared the regulatory mechanism of Drosophila Rhodopsin genes that are expressed in subsets of photoreceptors to that of phototransduction genes that are expressed broadly, in all photoreceptors. Both sets of genes share an 11-base pair (bp) activator motif. Broadly expressed genes contain a palindromic version that mediates expression in all photoreceptors. In contrast, each Rhodopsin exhibits characteristic single-bp substitutions that break the symmetry of the palindrome and generate activator or repressor motifs critical for restricting expression to photoreceptor subsets. Sensory neuron subtypes can therefore evolve through single-bp changes in short regulatory motifs, allowing the discrimination of a wide spectrum of stimuli.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rister, Jens -- Razzaq, Ansa -- Boodram, Pamela -- Desai, Nisha -- Tsanis, Cleopatra -- Chen, Hongtao -- Jukam, David -- Desplan, Claude -- K99EY023995/EY/NEI NIH HHS/ -- R01 EY13010/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1258-61. doi: 10.1126/science.aab3417.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Developmental Genetics, Department of Biology, New York University, 100 Washington Square East, New York, NY 10003-6688, USA. ; Center for Developmental Genetics, Department of Biology, New York University, 100 Washington Square East, New York, NY 10003-6688, USA. cd38@nyu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785491" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Pairing ; Drosophila Proteins/*genetics ; Drosophila melanogaster/genetics/growth & development ; *Gene Expression Regulation, Developmental ; Mutation ; Photoreceptor Cells, Invertebrate/*physiology ; Promoter Regions, Genetic/*genetics ; Rhodopsin/*genetics ; Transcription Factors/metabolism ; Vision, Ocular/*genetics
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tang, Zhenwu -- Huang, Qifei -- Nie, Zhiqiang -- Yang, Yufei -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1176-7. doi: 10.1126/science.350.6265.1176-c.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Environmental Research Academy, North China Electric Power University, Beijing, 102206, China. ; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China. huangqf@craes.org.cn. ; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785469" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Migration ; Animals ; *Birds
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  • 64
    Publication Date: 2016-01-20
    Description: Migratory species depend on a suite of interconnected sites. Threats to unprotected links in these chains of sites are driving rapid population declines of migrants around the world, yet the extent to which different parts of the annual cycle are protected remains unknown. We show that just 9% of 1451 migratory birds are adequately covered by protected areas across all stages of their annual cycle, in comparison with 45% of nonmigratory birds. This discrepancy is driven by protected area placement that does not cover the full annual cycle of migratory species, indicating that global efforts toward coordinated conservation planning for migrants are yet to bear fruit. Better-targeted investment and enhanced coordination among countries are needed to conserve migratory species throughout their migratory cycle.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Runge, Claire A -- Watson, James E M -- Butchart, Stuart H M -- Hanson, Jeffrey O -- Possingham, Hugh P -- Fuller, Richard A -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1255-8. doi: 10.1126/science.aac9180.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Geography, Planning and Environmental Management, University of Queensland, Brisbane, QLD, 4072, Australia. National Center for Ecological Analysis and Synthesis (NCEAS), University of California, Santa Barbara, Santa Barbara, CA 93101, USA. claire.runge@uqconnect.edu.au. ; School of Geography, Planning and Environmental Management, University of Queensland, Brisbane, QLD, 4072, Australia. Global Conservation Program, Wildlife Conservation Society, New York, NY, USA. ; BirdLife International, Wellbrook Court, Cambridge CB3 0NA, UK. ; School of Biological Sciences, University of Queensland, Brisbane, QLD 4072, Australia. ; School of Biological Sciences, University of Queensland, Brisbane, QLD 4072, Australia. Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire SL5 7PY, England, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785490" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Migration ; Animals ; *Birds ; Breeding ; *Conservation of Natural Resources ; Population Dynamics ; Seasons
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Underwood, Emily -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1188-90. doi: 10.1126/science.350.6265.1188.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785475" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/blood/genetics/*physiology ; Animals ; Biological Clocks/genetics/*physiology ; Biomarkers/blood/metabolism ; DNA/genetics ; DNA Methylation ; Epigenesis, Genetic ; Humans ; Mice ; Rats ; Telomere Homeostasis
    Print ISSN: 0036-8075
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  • 66
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scheid, Johannes F -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1175. doi: 10.1126/science.aad7133.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Massachusetts General Hospital, Boston, MA 02114, USA. The Rockefeller University, New York, NY 10021, USA. fscheid@partners.org.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785466" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Monoclonal/genetics/immunology/isolation & purification ; Antibodies, Neutralizing/genetics/*immunology/isolation & purification ; B-Lymphocytes/*immunology ; Cell Separation/methods ; HIV Antibodies/genetics/*immunology/isolation & purification ; HIV Infections/*blood ; Humans ; Immunologic Memory ; Mice ; env Gene Products, Human Immunodeficiency Virus/*immunology
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 67
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hurtley, Stella -- Roberts, Leslie -- Ray, L Bryan -- Purnell, Beverly A -- Ash, Caroline -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1180-1. doi: 10.1126/science.350.6265.1180.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785472" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/*genetics ; Animals ; Health ; Humans ; Mitochondria/metabolism ; Stem Cells/physiology ; Telomere/*genetics ; *Telomere Homeostasis
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ford, Adam T -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1175. doi: 10.1126/science.aad7134.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology at the University of Guelph, Guelph, Ontario, Canada. adamford@uoguelph.ca.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785465" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Animals, Wild ; Antelopes ; *Dogs ; Endangered Species ; *Food Chain ; *Grassland ; *Herbivory ; Humans ; Plants
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  • 69
    Publication Date: 2016-01-20
    Description: Mitochondrial morphology is shaped by fusion and division of their membranes. Here, we found that adult myocardial function depends on balanced mitochondrial fusion and fission, maintained by processing of the dynamin-like guanosine triphosphatase OPA1 by the mitochondrial peptidases YME1L and OMA1. Cardiac-specific ablation of Yme1l in mice activated OMA1 and accelerated OPA1 proteolysis, which triggered mitochondrial fragmentation and altered cardiac metabolism. This caused dilated cardiomyopathy and heart failure. Cardiac function and mitochondrial morphology were rescued by Oma1 deletion, which prevented OPA1 cleavage. Feeding mice a high-fat diet or ablating Yme1l in skeletal muscle restored cardiac metabolism and preserved heart function without suppressing mitochondrial fragmentation. Thus, unprocessed OPA1 is sufficient to maintain heart function, OMA1 is a critical regulator of cardiomyocyte survival, and mitochondrial morphology and cardiac metabolism are intimately linked.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wai, Timothy -- Garcia-Prieto, Jaime -- Baker, Michael J -- Merkwirth, Carsten -- Benit, Paule -- Rustin, Pierre -- Ruperez, Francisco Javier -- Barbas, Coral -- Ibanez, Borja -- Langer, Thomas -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):aad0116. doi: 10.1126/science.aad0116.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Genetics, University of Cologne, 50674 Cologne, Germany. Max-Planck-Institute for Biology of Aging, Cologne, Germany. ; Myocardial Pathophysiology Area, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain. ; Institute for Genetics, University of Cologne, 50674 Cologne, Germany. ; INSERM UMR 1141, Hopital Robert Debre, Paris, France. Universite Paris 7, Faculte de Medecine Denis Diderot, Paris, France. ; Centre for Metabolomics and Bioanalysis (CEMBIO), Faculty of Pharmacy, Universidad San Pablo CEU, Campus Monteprincipe, Boadilla del Monte, 28668 Madrid, Spain. ; Myocardial Pathophysiology Area, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain. Department of Cardiology, Instituto de Investigacion Sanitaria (IIS), Fundacion Jimenez Diaz Hospital, Madrid, Spain. thomas.langer@uni-koeln.de bibanez@cnic.es. ; Institute for Genetics, University of Cologne, 50674 Cologne, Germany. Max-Planck-Institute for Biology of Aging, Cologne, Germany. Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany. thomas.langer@uni-koeln.de bibanez@cnic.es.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785494" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cardiomyopathy, Dilated/genetics/metabolism/pathology ; Diet, High-Fat ; Embryonic Development ; Female ; GTP Phosphohydrolases ; Gene Deletion ; Heart/embryology ; Heart Failure/genetics/*metabolism/pathology ; Male ; Metalloendopeptidases/genetics ; Metalloproteases/genetics/metabolism ; Mice ; Mice, Knockout ; Mitochondria, Heart/*metabolism/ultrastructure ; *Mitochondrial Degradation ; *Mitochondrial Dynamics ; Mitochondrial Proteins/genetics/metabolism ; Muscle, Skeletal/enzymology ; Myocardium/*metabolism/pathology ; Myocytes, Cardiac/enzymology/pathology ; Proteolysis
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: Mitochondria generate adenosine 5'-triphosphate (ATP) and are a source of potentially toxic reactive oxygen species (ROS). It has been suggested that the gradual mitochondrial dysfunction that is observed to accompany aging could in fact be causal to the aging process. Here we review findings that suggest that age-dependent mitochondrial dysfunction is not sufficient to limit life span. Furthermore, mitochondrial ROS are not always deleterious and can even stimulate pro-longevity pathways. Thus, mitochondrial dysfunction plays a complex role in regulating longevity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, Ying -- Hekimi, Siegfried -- MOP-114891/Canadian Institutes of Health Research/Canada -- MOP-123295/Canadian Institutes of Health Research/Canada -- MOP-97869/Canadian Institutes of Health Research/Canada -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1204-7. doi: 10.1126/science.aac4357.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada. ; Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada. siegfried.hekimi@mcgill.ca.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785479" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/*metabolism ; Animals ; Caenorhabditis elegans Proteins/genetics ; Electron Transport/genetics ; Electron Transport Complex III/genetics ; Longevity/genetics/*physiology ; Mice ; Mice, Knockout ; Mitochondria/genetics/*metabolism ; Point Mutation ; Reactive Oxygen Species/*metabolism
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    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cleary, Allison S -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1174-5. doi: 10.1126/science.aad7103.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Pennsylvania State University College of Medicine, Hershey PA 17078, USA. acleary@hmc.psu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785463" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breast Neoplasms/genetics/metabolism/*pathology ; Clone Cells/metabolism/pathology ; Female ; Mammary Neoplasms, Experimental/genetics/metabolism/*pathology ; Mice ; Neoplasms, Basal Cell/genetics/metabolism/pathology ; Wnt1 Protein/genetics/*metabolism ; ras Proteins/genetics/metabolism
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  • 72
    Publication Date: 2016-01-20
    Description: Age is the greatest risk factor for nearly every major cause of mortality in developed nations. Despite this, most biomedical research focuses on individual disease processes without much consideration for the relationships between aging and disease. Recent discoveries in the field of geroscience, which aims to explain biological mechanisms of aging, have provided insights into molecular processes that underlie biological aging and, perhaps more importantly, potential interventions to delay aging and promote healthy longevity. Here we describe some of these advances, along with efforts to move geroscience from the bench to the clinic. We also propose that greater emphasis should be placed on research into basic aging processes, because interventions that slow aging will have a greater effect on quality of life compared with disease-specific approaches.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kaeberlein, Matt -- Rabinovitch, Peter S -- Martin, George M -- P30AG013280/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1191-3. doi: 10.1126/science.aad3267.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, University of Washington, Seattle, WA 98195, USA. kaeber@uw.edu. ; Department of Pathology, University of Washington, Seattle, WA 98195, USA. ; Department of Pathology, University of Washington, Seattle, WA 98195, USA. Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785476" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Animals ; Diet ; Exercise ; Geriatrics/*trends ; *Health ; Humans ; Mortality ; Preventive Medicine/*trends ; Risk Factors ; TOR Serine-Threonine Kinases/antagonists & inhibitors ; Translational Medical Research/trends
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    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cohen, Jon -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1186-7. doi: 10.1126/science.350.6265.1186.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785474" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Caenorhabditis elegans/genetics/physiology ; Caenorhabditis elegans Proteins/genetics/physiology ; Caloric Restriction ; Death ; Humans ; Hydra/genetics/physiology ; Longevity/genetics/*physiology ; Mice ; Mutation ; Phosphatidylinositol 3-Kinases/genetics/physiology
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  • 74
    Publication Date: 2016-01-20
    Description: In developing hearts, changes in the cardiac metabolic milieu during the perinatal period redirect mitochondrial substrate preference from carbohydrates to fatty acids. Mechanisms responsible for this mitochondrial plasticity are unknown. Here, we found that PINK1-Mfn2-Parkin-mediated mitophagy directs this metabolic transformation in mouse hearts. A mitofusin (Mfn) 2 mutant lacking PINK1 phosphorylation sites necessary for Parkin binding (Mfn2 AA) inhibited mitochondrial Parkin translocation, suppressing mitophagy without impairing mitochondrial fusion. Cardiac Parkin deletion or expression of Mfn2 AA from birth, but not after weaning, prevented postnatal mitochondrial maturation essential to survival. Five-week-old Mfn2 AA hearts retained a fetal mitochondrial transcriptional signature without normal increases in fatty acid metabolism and mitochondrial biogenesis genes. Myocardial fatty acylcarnitine levels and cardiomyocyte respiration induced by palmitoylcarnitine were concordantly depressed. Thus, instead of transcriptional reprogramming, fetal cardiomyocyte mitochondria undergo perinatal Parkin-mediated mitophagy and replacement by mature adult mitochondria. Mitophagic mitochondrial removal underlies developmental cardiomyocyte mitochondrial plasticity and metabolic transitioning of perinatal hearts.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747105/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747105/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gong, Guohua -- Song, Moshi -- Csordas, Gyorgy -- Kelly, Daniel P -- Matkovich, Scot J -- Dorn, Gerald W 2nd -- HL058493/HL/NHLBI NIH HHS/ -- HL108943/HL/NHLBI NIH HHS/ -- HL122124/HL/NHLBI NIH HHS/ -- HL128071/HL/NHLBI NIH HHS/ -- HL59888/HL/NHLBI NIH HHS/ -- R01 HL058493/HL/NHLBI NIH HHS/ -- R01 HL059888/HL/NHLBI NIH HHS/ -- R01 HL108943/HL/NHLBI NIH HHS/ -- R01 HL128071/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):aad2459. doi: 10.1126/science.aad2459. Epub 2015 Dec 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Pharmacogenomics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA. ; Department of Pathology, Anatomy, and Cell Biology, Thomas Jefferson University, Philadelphia, PA, USA. ; Center for Metabolic Origins of Disease, Cardiovascular Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA. ; Center for Pharmacogenomics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA. gdorn@dom.wustl.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785495" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cellular Reprogramming ; GTP Phosphohydrolases/genetics/metabolism ; Heart/*embryology ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mitochondria, Heart/metabolism/*physiology/ultrastructure ; Mitochondrial Degradation/genetics/*physiology ; Mitochondrial Dynamics ; Myocardium/*metabolism/ultrastructure ; Myocytes, Cardiac/metabolism/ultrastructure ; Protein Kinases/metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism
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  • 75
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: Research into stem cells and aging aims to understand how stem cells maintain tissue health, what mechanisms ultimately lead to decline in stem cell function with age, and how the regenerative capacity of somatic stem cells can be enhanced to promote healthy aging. Here, we explore the effects of aging on stem cells in different tissues. Recent research has focused on the ways that genetic mutations, epigenetic changes, and the extrinsic environmental milieu influence stem cell functionality over time. We describe each of these three factors, the ways in which they interact, and how these interactions decrease stem cell health over time. We are optimistic that a better understanding of these changes will uncover potential strategies to enhance stem cell function and increase tissue resiliency into old age.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goodell, Margaret A -- Rando, Thomas A -- P01 AG036695/AG/NIA NIH HHS/ -- R01 AG047820/AG/NIA NIH HHS/ -- R01 AR062185/AR/NIAMS NIH HHS/ -- R37 AG023806/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1199-204. doi: 10.1126/science.aab3388.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stem Cells and Regenerative Medicine Center, Center for Cell and Gene Therapy, and Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA. goodell@bcm.edu rando@stanford.edu. ; Glenn Center for the Biology of Aging and Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA, and Center for Regenerative Rehabilitation, Veterans Administration Palo Alto Health Care System, Palo Alto, CA 94304, USA. goodell@bcm.edu rando@stanford.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785478" target="_blank"〉PubMed〈/a〉
    Keywords: Adult Stem Cells/*physiology ; Aging/*physiology ; Animals ; Cell Aging ; Epigenesis, Genetic ; Genetic Drift ; *Health ; Humans ; Mice ; Mutation ; Organ Specificity ; Selection, Genetic
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  • 76
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gottlieb, Roberta A -- Bernstein, Daniel -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1162-3. doi: 10.1126/science.aad8222.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA. roberta.gottlieb@cshs.org. ; Department of Pediatrics, Stanford University, Palo Alto, CA 94304, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785456" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; Heart/*embryology ; Heart Failure/*metabolism ; Male ; Mitochondria, Heart/*metabolism/*physiology ; Mitochondrial Degradation/*physiology ; *Mitochondrial Dynamics ; Myocardium/*metabolism ; Ubiquitin-Protein Ligases/*metabolism
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  • 77
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stokstad, Erik -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1144-7. doi: 10.1126/science.350.6265.1144.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785454" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Breeding ; Cattle ; Europe ; *Extinction, Biological
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  • 78
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Grimm, David -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1182-5. doi: 10.1126/science.350.6265.1182.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785473" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Animals ; Body Weight ; Cats ; Dogs ; Humans ; *Longevity ; Pets/*physiology
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  • 79
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kintisch, Eli -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1148-51. doi: 10.1126/science.350.6265.1148. Epub 2015 Dec 3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785455" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bison ; *Conservation of Natural Resources ; *Herbivory ; *Parks, Recreational ; *Permafrost ; Siberia ; *Taiga
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  • 80
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-04-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Apr 8;352(6282):128-9. doi: 10.1126/science.352.6282.128. Epub 2016 Apr 7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27124428" target="_blank"〉PubMed〈/a〉
    Keywords: Aedes/virology ; Angola/epidemiology ; Animals ; Chick Embryo ; Disease Outbreaks/*prevention & control ; Humans ; Vaccination/statistics & numerical data ; World Health Organization ; Yellow Fever/*epidemiology/*prevention & control ; Yellow Fever Vaccine/*administration & dosage
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  • 81
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-03-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Mar 11;351(6278):1143. doi: 10.1126/science.351.6278.1143.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26965608" target="_blank"〉PubMed〈/a〉
    Keywords: Acinetobacter/*growth & development ; Animals ; *Death ; Humans ; Mice ; Moraxellaceae/*growth & development ; Rhizobiaceae/*growth & development ; Time Factors
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  • 82
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-04-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Apr 22;352(6284):391-2. doi: 10.1126/science.352.6284.391. Epub 2016 Apr 21.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27102452" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Communicable Diseases/diagnosis/*epidemiology/etiology ; Echinococcosis/diagnosis/epidemiology ; Echinococcus/isolation & purification ; *Emigration and Immigration ; Europe ; Humans ; Mass Screening ; Methicillin Resistance ; Methicillin-Resistant Staphylococcus aureus/isolation & purification ; *Refugees
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  • 83
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-03-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schwartz, Gary J -- DK 020541/DK/NIDDK NIH HHS/ -- DK 026687/DK/NIDDK NIH HHS/ -- DK 105441/DK/NIDDK NIH HHS/ -- New York, N.Y. -- Science. 2016 Mar 18;351(6279):1268-9. doi: 10.1126/science.aaf5216. Epub 2016 Mar 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departments of Medicine & Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA. gary.schwartz@einstein.yu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26989239" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Energy Metabolism/*physiology ; Feeding Behavior/*physiology ; Hyperphagia/*genetics ; Male ; N-Acetylglucosaminyltransferases/*physiology ; Paraventricular Hypothalamic Nucleus/*physiology
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  • 84
    Publication Date: 2016-02-26
    Description: In most animal species, juvenile growth is marked by an exponential gain in body weight and size. Here we show that the microbiota of infant mice sustains both weight gain and longitudinal growth when mice are fed a standard laboratory mouse diet or a nutritionally depleted diet. We found that the intestinal microbiota interacts with the somatotropic hormone axis to drive systemic growth. Using monocolonized mouse models, we showed that selected lactobacilli promoted juvenile growth in a strain-dependent manner that recapitulated the microbiota's effect on growth and the somatotropic axis. These findings show that the host's microbiota supports juvenile growth. Moreover, we discovered that lactobacilli strains buffered the adverse effects of chronic undernutrition on the postnatal growth of germ-free mice.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schwarzer, Martin -- Makki, Kassem -- Storelli, Gilles -- Machuca-Gayet, Irma -- Srutkova, Dagmar -- Hermanova, Petra -- Martino, Maria Elena -- Balmand, Severine -- Hudcovic, Tomas -- Heddi, Abdelaziz -- Rieusset, Jennifer -- Kozakova, Hana -- Vidal, Hubert -- Leulier, Francois -- New York, N.Y. -- Science. 2016 Feb 19;351(6275):854-7. doi: 10.1126/science.aad8588.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. Laboratory of Gnotobiology, Institute of Microbiology of the Czech Academy of Sciences, v. v. i., Novy Hradek, Czech Republic. ; Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. Laboratoire CarMeN, Universite Lyon 1, Unite Mixte de Recherche INSERM U-1060 et INRA U-1397, Faculte de Medecine Lyon-Sud, Chemin du Grand Revoyet, 69600 Oullins, France. ; Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. ; Laboratory of Gnotobiology, Institute of Microbiology of the Czech Academy of Sciences, v. v. i., Novy Hradek, Czech Republic. ; UMR203 BF2I, Biologie Fonctionnelle Insectes et Interactions, Universite de Lyon, INRA, INSA-Lyon, F-69621 Villeurbanne, France. ; Laboratoire CarMeN, Universite Lyon 1, Unite Mixte de Recherche INSERM U-1060 et INRA U-1397, Faculte de Medecine Lyon-Sud, Chemin du Grand Revoyet, 69600 Oullins, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26912894" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Weight/*physiology ; Diet ; Femur/growth & development ; Gastrointestinal Microbiome/*physiology ; Lactobacillus plantarum/*physiology ; Malnutrition/*microbiology/*physiopathology ; Mice ; Mice, Inbred BALB C ; Weight Gain/*physiology
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  • 85
    Publication Date: 2016-01-23
    Description: Mono-ubiquitination of Fancd2 is essential for repairing DNA interstrand cross-links (ICLs), but the underlying mechanisms are unclear. The Fan1 nuclease, also required for ICL repair, is recruited to ICLs by ubiquitinated (Ub) Fancd2. This could in principle explain how Ub-Fancd2 promotes ICL repair, but we show that recruitment of Fan1 by Ub-Fancd2 is dispensable for ICL repair. Instead, Fan1 recruitment--and activity--restrains DNA replication fork progression and prevents chromosome abnormalities from occurring when DNA replication forks stall, even in the absence of ICLs. Accordingly, Fan1 nuclease-defective knockin mice are cancer-prone. Moreover, we show that a Fan1 variant in high-risk pancreatic cancers abolishes recruitment by Ub-Fancd2 and causes genetic instability without affecting ICL repair. Therefore, Fan1 recruitment enables processing of stalled forks that is essential for genome stability and health.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770513/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770513/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lachaud, Christophe -- Moreno, Alberto -- Marchesi, Francesco -- Toth, Rachel -- Blow, J Julian -- Rouse, John -- WT096598MA/Wellcome Trust/United Kingdom -- Medical Research Council/United Kingdom -- New York, N.Y. -- Science. 2016 Feb 19;351(6275):846-9. doi: 10.1126/science.aad5634. Epub 2016 Jan 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. ; Centre for Gene Regulation and Expression, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. ; School of Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Bearsden Road, Glasgow G61 1QH, UK. ; Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. j.rouse@dundee.ac.uk.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797144" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; *Chromosome Aberrations ; DNA Repair ; *DNA Replication ; Endodeoxyribonucleases/genetics/*metabolism ; Fanconi Anemia Complementation Group D2 Protein/genetics/*metabolism ; Female ; Gene Knock-In Techniques ; Genetic Predisposition to Disease ; Genomic Instability/*genetics ; Liver Neoplasms/genetics/pathology ; Lung Neoplasms/genetics/pathology ; Lymphoma/genetics/pathology ; Male ; Mice ; Mice, Inbred C57BL ; Molecular Sequence Data ; Pancreatic Neoplasms/*genetics ; *Ubiquitination
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  • 86
    Publication Date: 2016-03-19
    Description: Maintaining energy homeostasis is crucial for the survival and health of organisms. The brain regulates feeding by responding to dietary factors and metabolic signals from peripheral organs. It is unclear how the brain interprets these signals. O-GlcNAc transferase (OGT) catalyzes the posttranslational modification of proteins by O-GlcNAc and is regulated by nutrient access. Here, we show that acute deletion of OGT from alphaCaMKII-positive neurons in adult mice caused obesity from overeating. The hyperphagia derived from the paraventricular nucleus (PVN) of the hypothalamus, where loss of OGT was associated with impaired satiety. These results identify O-GlcNAcylation in alphaCaMKII neurons of the PVN as an important molecular mechanism that regulates feeding behavior.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817221/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817221/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lagerlof, Olof -- Slocomb, Julia E -- Hong, Ingie -- Aponte, Yeka -- Blackshaw, Seth -- Hart, Gerald W -- Huganir, Richard L -- N01-HV-00240/HV/NHLBI NIH HHS/ -- P01 HL107153/HL/NHLBI NIH HHS/ -- P01HL107153/HL/NHLBI NIH HHS/ -- R01 DK061671/DK/NIDDK NIH HHS/ -- R01 NS036715/NS/NINDS NIH HHS/ -- R01DK6167/DK/NIDDK NIH HHS/ -- R01NS036715/NS/NINDS NIH HHS/ -- Intramural NIH HHS/ -- New York, N.Y. -- Science. 2016 Mar 18;351(6279):1293-6. doi: 10.1126/science.aad5494.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; National Institute on Drug Abuse + National Institutes of Health/Johns Hopkins University Graduate Partnership Program, Baltimore, MD 21224, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Intramural Research Program, Neuronal Circuits and Behavior Unit, National Institute on Drug Abuse, Baltimore, MD 21224, USA. ; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. rhuganir@jhmi.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26989246" target="_blank"〉PubMed〈/a〉
    Keywords: Acetylglucosamine/metabolism ; Animals ; Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism ; Energy Metabolism/genetics/*physiology ; Feeding Behavior/*physiology ; Gene Deletion ; Homeostasis/genetics ; Hyperphagia/*genetics ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; N-Acetylglucosaminyltransferases/genetics/*physiology ; Neurons/enzymology ; Obesity/genetics ; Paraventricular Hypothalamic Nucleus/cytology/enzymology/*physiology ; Protein Processing, Post-Translational ; Satiety Response/physiology
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  • 87
    Publication Date: 2016-04-02
    Description: When animals encounter conflict they initiate and escalate aggression to establish and maintain a social hierarchy. The neural mechanisms by which animals resolve fighting behaviors to determine such social hierarchies remain unknown. We identified two subregions of the dorsal habenula (dHb) in zebrafish that antagonistically regulate the outcome of conflict. The losing experience reduced neural transmission in the lateral subregion of dHb (dHbL)-dorsal/intermediate interpeduncular nucleus (d/iIPN) circuit. Silencing of the dHbL or medial subregion of dHb (dHbM) caused a stronger predisposition to lose or win a fight, respectively. These results demonstrate that the dHbL and dHbM comprise a dual control system for conflict resolution of social aggression.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chou, Ming-Yi -- Amo, Ryunosuke -- Kinoshita, Masae -- Cherng, Bor-Wei -- Shimazaki, Hideaki -- Agetsuma, Masakazu -- Shiraki, Toshiyuki -- Aoki, Tazu -- Takahoko, Mikako -- Yamazaki, Masako -- Higashijima, Shin-ichi -- Okamoto, Hitoshi -- New York, N.Y. -- Science. 2016 Apr 1;352(6281):87-90. doi: 10.1126/science.aac9508.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. ; Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan. ; Laboratory for Neural Computation and Adaptation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. ; National Institutes of Natural Sciences, Okazaki Institute for Integrative Bioscience, National Institute for Physiological Sciences, Aichi 444-8787, Japan. ; Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan. Laboratory for Molecular Brain Science, Department of Life Science and Medical Bioscience, Waseda University, Tokyo 162-8430, Japan. hitoshi@brain.riken.jp.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27034372" target="_blank"〉PubMed〈/a〉
    Keywords: Aggression/*physiology ; Animals ; *Conflict (Psychology) ; Habenula/*physiology ; Hierarchy, Social ; Interpeduncular Nucleus/physiology ; *Negotiating ; Synaptic Transmission ; Zebrafish
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  • 88
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Larson, Christina -- New York, N.Y. -- Science. 2016 Jan 22;351(6271):323-4. doi: 10.1126/science.351.6271.323.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797990" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Shells ; Animals ; Art ; *Bivalvia ; China ; *Endangered Species
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  • 89
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Service, Robert F -- New York, N.Y. -- Science. 2016 Jan 22;351(6271):326-7. doi: 10.1126/science.351.6271.326.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797993" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Migration ; Animals ; Birds ; *Carps ; Cattle ; *Environmental Restoration and Remediation ; Herbivory ; *Introduced Species ; Oregon ; Violence
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  • 90
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-04-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Landolt, Hans-Peter -- Holst, Sebastian C -- New York, N.Y. -- Science. 2016 Apr 29;352(6285):517-8. doi: 10.1126/science.aaf8178.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Pharmacology and Toxicology, University of Zurich, Zurich, Switzerland. Zurich Center for Interdisciplinary Sleep Research, University of Zurich, Zurich, Switzerland. landolt@pharma.uzh.ch. ; Institute of Pharmacology and Toxicology, University of Zurich, Zurich, Switzerland. Zurich Center for Interdisciplinary Sleep Research, University of Zurich, Zurich, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27126024" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cations/*metabolism ; Cerebral Cortex/*physiology ; Male ; Potassium/*metabolism ; Sleep/*physiology ; Wakefulness/*physiology
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  • 91
    Publication Date: 2016-04-23
    Description: Ecological character displacement is a process of morphological divergence that reduces competition for limited resources. We used genomic analysis to investigate the genetic basis of a documented character displacement event in Darwin's finches on Daphne Major in the Galapagos Islands: The medium ground finch diverged from its competitor, the large ground finch, during a severe drought. We discovered a genomic region containing the HMGA2 gene that varies systematically among Darwin's finch species with different beak sizes. Two haplotypes that diverged early in the radiation were involved in the character displacement event: Genotypes associated with large beak size were at a strong selective disadvantage in medium ground finches (selection coefficient s = 0.59). Thus, a major locus has apparently facilitated a rapid ecological diversification in the adaptive radiation of Darwin's finches.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lamichhaney, Sangeet -- Han, Fan -- Berglund, Jonas -- Wang, Chao -- Almen, Markus Sallman -- Webster, Matthew T -- Grant, B Rosemary -- Grant, Peter R -- Andersson, Leif -- New York, N.Y. -- Science. 2016 Apr 22;352(6284):470-4. doi: 10.1126/science.aad8786.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. ; Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA. ; Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden. Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA. leif.andersson@imbim.uu.se.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27102486" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Beak/*anatomy & histology ; Body Size/genetics ; *Droughts ; Ecuador ; Female ; Finches/*anatomy & histology/classification/*genetics ; Genomics ; Genotype ; HMGA2 Protein/genetics ; Haplotypes ; Organ Size/genetics ; Phylogeny ; *Quantitative Trait Loci ; *Selection, Genetic
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  • 92
    Publication Date: 2016-03-26
    Description: Shadlen et al's Comment focuses on extrapolations of our results that were not implied or asserted in our Report. They discuss alternate analyses of average firing rates in other tasks, the relationship between neural activity and behavior, and possible extensions of the standard models we examined. Although interesting to contemplate, these points are not germane to the findings of our Report: that stepping dynamics provided a better statistical description of lateral intraparietal area spike trains than diffusion-to-bound dynamics for a majority of neurons.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Latimer, Kenneth W -- Yates, Jacob L -- Meister, Miriam L R -- Huk, Alexander C -- Pillow, Jonathan W -- New York, N.Y. -- Science. 2016 Mar 25;351(6280):1406. doi: 10.1126/science.aad3596.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. ; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Psychology, The University of Texas at Austin, Austin, TX 78712, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Psychology, The University of Texas at Austin, Austin, TX 78712, USA. Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ 08544, USA. pillow@princeton.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27013724" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Choice Behavior/*physiology ; Decision Making/*physiology ; Male ; Parietal Lobe/*physiology
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  • 93
    Publication Date: 2016-03-26
    Description: Latimeret al (Reports, 10 July 2015, p. 184) claim that during perceptual decision formation, parietal neurons undergo one-time, discrete steps in firing rate instead of gradual changes that represent the accumulation of evidence. However, that conclusion rests on unsubstantiated assumptions about the time window of evidence accumulation, and their stepping model cannot explain existing data as effectively as evidence-accumulation models.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shadlen, Michael N -- Kiani, Roozbeh -- Newsome, William T -- Gold, Joshua I -- Wolpert, Daniel M -- Zylberberg, Ariel -- Ditterich, Jochen -- de Lafuente, Victor -- Yang, Tianming -- Roitman, Jamie -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2016 Mar 25;351(6280):1406. doi: 10.1126/science.aad3242.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute (HHMI) and Department of Neuroscience, Columbia University, New York, NY, USA. shadlen@columbia.edu. ; Center for Neural Science, New York University, New York, NY, USA. ; HHMI and Stanford University, Stanford, CA, USA. ; Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA. ; Department of Engineering, University of Cambridge, Cambridge, UK. ; HHMI and Department of Neuroscience, Columbia University, New York, NY, USA. ; Center for Neuroscience and Department of Neurobiology, Physiology, and Behavior, University of California, Davis, CA, USA. ; Institute for Neuroscience, National Autonomous University of Mexico, Queretaro, Mexico. ; Institute of Neuroscience, Chinese Academy of Sciences, Shanghai, China. ; Department of Psychology, University of Illinois at Chicago, Chicago, IL, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27013723" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Choice Behavior/*physiology ; Decision Making/*physiology ; Male ; Parietal Lobe/*physiology
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  • 94
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Servick, Kelly -- New York, N.Y. -- Science. 2016 Jan 1;351(6268):15. doi: 10.1126/science.351.6268.15.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26721984" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; California ; Cell Differentiation ; Clinical Trials as Topic ; Drug Industry ; Embryonic Stem Cells/cytology/*transplantation ; Financing, Organized ; Humans ; Photoreceptor Cells/physiology ; Rats ; Regenerative Medicine/*economics/*trends ; Retina/cytology/physiology ; Stem Cell Research/*economics
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 95
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lawler, Andrew -- New York, N.Y. -- Science. 2016 Jan 8;351(6269):111-2. doi: 10.1126/science.351.6269.111.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26744387" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Drinking Water ; *Droughts ; Humans ; Indian Ocean ; Iraq ; Mesopotamia ; Salinity ; Warfare ; Water Resources/*supply & distribution ; *Wetlands
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 96
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cohen, Jon -- New York, N.Y. -- Science. 2016 Jan 1;351(6268):16-9. doi: 10.1126/science.351.6268.16.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26721985" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomedical Research/*economics ; Communicable Disease Control/*economics ; Financial Management ; Humans ; National Institutes of Health (U.S.) ; United States ; Vaccines/*economics
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  • 97
    Publication Date: 2016-02-27
    Description: Oocytes differentiate in diverse species by receiving organelles and cytoplasm from sister germ cells while joined in germline cysts or syncytia. Mouse primordial germ cells form germline cysts, but the role of cysts in oogenesis is unknown. We find that mouse germ cells receive organelles from neighboring cyst cells and build a Balbiani body to become oocytes, whereas nurselike germ cells die. Organelle movement, Balbiani body formation, and oocyte fate determination are selectively blocked by low levels of microtubule-dependent transport inhibitors. Membrane breakdown within the cyst and an apoptosis-like process are associated with organelle transfer into the oocyte, events reminiscent of nurse cell dumping in Drosophila We propose that cytoplasmic and organelle transport plays an evolutionarily conserved and functionally important role in mammalian oocyte differentiation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lei, Lei -- Spradling, Allan C -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2016 Apr 1;352(6281):95-9. doi: 10.1126/science.aad2156. Epub 2016 Feb 25.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute Research Laboratories, Department of Embryology, Carnegie Institution for Science, 3520 San Martin Drive, Baltimore, MD 21218, USA. spradling@ciwemb.edu leile@med.umich.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26917595" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Apoptosis ; Biological Evolution ; Cytoplasm/physiology/ultrastructure ; Female ; Giant Cells/*cytology ; Mice ; Microtubules/drug effects/physiology ; Oocytes/*cytology ; *Oogenesis ; Organelles/*physiology
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  • 98
    Publication Date: 2016-01-30
    Description: Cystic fibrosis (CF) is caused by mutations in the gene that encodes the cystic fibrosis transmembrane conductance regulator (CFTR) anion channel. In humans and pigs, the loss of CFTR impairs respiratory host defenses, causing airway infection. But CF mice are spared. We found that in all three species, CFTR secreted bicarbonate into airway surface liquid. In humans and pigs lacking CFTR, unchecked H(+) secretion by the nongastric H(+)/K(+) adenosine triphosphatase (ATP12A) acidified airway surface liquid, which impaired airway host defenses. In contrast, mouse airways expressed little ATP12A and secreted minimal H(+); consequently, airway surface liquid in CF and non-CF mice had similar pH. Inhibiting ATP12A reversed host defense abnormalities in human and pig airways. Conversely, expressing ATP12A in CF mouse airways acidified airway surface liquid, impaired defenses, and increased airway bacteria. These findings help explain why CF mice are protected from infection and nominate ATP12A as a potential therapeutic target for CF.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shah, Viral S -- Meyerholz, David K -- Tang, Xiao Xiao -- Reznikov, Leah -- Abou Alaiwa, Mahmoud -- Ernst, Sarah E -- Karp, Philip H -- Wohlford-Lenane, Christine L -- Heilmann, Kristopher P -- Leidinger, Mariah R -- Allen, Patrick D -- Zabner, Joseph -- McCray, Paul B Jr -- Ostedgaard, Lynda S -- Stoltz, David A -- Randak, Christoph O -- Welsh, Michael J -- 5T32GM007337/GM/NIGMS NIH HHS/ -- DK054759/DK/NIDDK NIH HHS/ -- F30 HL123239/HL/NHLBI NIH HHS/ -- F30HL123239/HL/NHLBI NIH HHS/ -- HL091842/HL/NHLBI NIH HHS/ -- HL117744/HL/NHLBI NIH HHS/ -- HL51670/HL/NHLBI NIH HHS/ -- K08HL097071/HL/NHLBI NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2016 Jan 29;351(6272):503-7. doi: 10.1126/science.aad5589.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, University of Iowa, Iowa City, IA 52242, USA. Department of Molecular Physiology and Biophysics, Pappajohn Biomedical Institute, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA. ; Department of Pathology, University of Iowa, Iowa City, IA 52242, USA. ; Department of Medicine, University of Iowa, Iowa City, IA 52242, USA. Howard Hughes Medical Institute, University of Iowa, Iowa City, IA 52242, USA. ; Department of Medicine, University of Iowa, Iowa City, IA 52242, USA. ; Department of Pediatrics University of Iowa, Iowa City, IA 52242, USA. ; Department of Microbiology, University of Iowa, Iowa City, IA 52242, USA. ; Department of Pediatrics University of Iowa, Iowa City, IA 52242, USA. Department of Microbiology, University of Iowa, Iowa City, IA 52242, USA. ; Department of Medicine, University of Iowa, Iowa City, IA 52242, USA. Department of Molecular Physiology and Biophysics, Pappajohn Biomedical Institute, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA. Department of Biomedical Engineering, College of Engineering, University of Iowa, Iowa City, IA 52242, USA. ; Department of Medicine, University of Iowa, Iowa City, IA 52242, USA. Department of Molecular Physiology and Biophysics, Pappajohn Biomedical Institute, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA. Howard Hughes Medical Institute, University of Iowa, Iowa City, IA 52242, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26823428" target="_blank"〉PubMed〈/a〉
    Keywords: Acids/metabolism ; Animals ; Bicarbonates/metabolism ; Cystic Fibrosis/*metabolism/*microbiology ; H(+)-K(+)-Exchanging ATPase/genetics/*metabolism ; Humans ; Hydrogen-Ion Concentration ; Lung/*metabolism/*microbiology ; Mice ; Mice, Inbred CFTR/genetics/metabolism ; Mice, Transgenic ; Swine
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  • 99
    Publication Date: 2016-01-02
    Description: Several recent studies link parental environments to phenotypes in subsequent generations. In this work, we investigate the mechanism by which paternal diet affects offspring metabolism. Protein restriction in mice affects small RNA (sRNA) levels in mature sperm, with decreased let-7 levels and increased amounts of 5' fragments of glycine transfer RNAs (tRNAs). In testicular sperm, tRNA fragments are scarce but increase in abundance as sperm mature in the epididymis. Epididymosomes (vesicles that fuse with sperm during epididymal transit) carry RNA payloads matching those of mature sperm and can deliver RNAs to immature sperm in vitro. Functionally, tRNA-glycine-GCC fragments repress genes associated with the endogenous retroelement MERVL, in both embryonic stem cells and embryos. Our results shed light on sRNA biogenesis and its dietary regulation during posttesticular sperm maturation, and they also link tRNA fragments to regulation of endogenous retroelements active in the preimplantation embryo.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sharma, Upasna -- Conine, Colin C -- Shea, Jeremy M -- Boskovic, Ana -- Derr, Alan G -- Bing, Xin Y -- Belleannee, Clemence -- Kucukural, Alper -- Serra, Ryan W -- Sun, Fengyun -- Song, Lina -- Carone, Benjamin R -- Ricci, Emiliano P -- Li, Xin Z -- Fauquier, Lucas -- Moore, Melissa J -- Sullivan, Robert -- Mello, Craig C -- Garber, Manuel -- Rando, Oliver J -- DP1ES025458/DP/NCCDPHP CDC HHS/ -- R01HD080224/HD/NICHD NIH HHS/ -- UL1 TR000161/TR/NCATS NIH HHS/ -- UL1 TR001453/TR/NCATS NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2016 Jan 22;351(6271):391-6. doi: 10.1126/science.aad6780. Epub 2015 Dec 31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Department of Obstetrics, Gynecology and Reproduction, Universite Laval, Centre Hospitalier Universitaire de Quebec Research Center, Quebec City, Quebec G1V 4G2, Canada. ; RNAi Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. RNAi Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. RNAi Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. RNAi Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. ; Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. oliver.rando@umassmed.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26721685" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blastocyst/metabolism ; Diet, Protein-Restricted ; Epididymis/metabolism ; *Fertilization ; *Gene Expression Regulation ; Male ; Mice ; MicroRNAs/metabolism ; RNA, Transfer, Gly/*metabolism/*physiology ; Retroelements/genetics ; *Sperm Maturation ; Spermatozoa/*metabolism ; Testis/metabolism
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  • 100
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2016-01-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Leslie, Mitch -- New York, N.Y. -- Science. 2016 Jan 1;351(6268):13. doi: 10.1126/science.351.6268.13.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26721982" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; DNA/chemistry/genetics/metabolism ; *Epigenesis, Genetic ; Male ; Metabolism/*genetics ; Mice ; RNA, Transfer/genetics/*metabolism ; *Spermatozoa
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