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  • American Meteorological Society  (44)
  • Nature Research  (29)
  • Leipzig : Akad. Verlagsges.
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  • 1
    Publication Date: 2022-03-01
    Description: To examine the atmospheric responses to Arctic sea ice variability in the Northern Hemisphere cold season (from October to the following March), this study uses a coordinated set of large-ensemble experiments of nine atmospheric general circulation models (AGCMs) forced with observed daily varying sea ice, sea surface temperature, and radiative forcings prescribed during the 1979–2014 period, together with a parallel set of experiments where Arctic sea ice is substituted by its climatology. The simulations of the former set reproduce the near-surface temperature trends in reanalysis data, with similar amplitude, and their multimodel ensemble mean (MMEM) shows decreasing sea level pressure over much of the polar cap and Eurasia in boreal autumn. The MMEM difference between the two experiments allows isolating the effects of Arctic sea ice loss, which explain a large portion of the Arctic warming trends in the lower troposphere and drive a small but statistically significant weakening of the wintertime Arctic Oscillation. The observed interannual covariability between sea ice extent in the Barents–Kara Seas and lagged atmospheric circulation is distinguished from the effects of confounding factors based on multiple regression, and quantitatively compared to the covariability in MMEMs. The interannual sea ice decline followed by a negative North Atlantic Oscillation–like anomaly found in observations is also seen in the MMEM differences, with consistent spatial structure but much smaller amplitude. This result suggests that the sea ice impacts on trends and interannual atmospheric variability simulated by AGCMs could be underestimated, but caution is needed because internal atmospheric variability may have affected the observed relationship.
    Description: Published
    Description: 8419–8443
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Keywords: Arctic ; Sea ice ; Atmospheric circulation ; Climate models ; 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
    Publication Date: 2022-02-14
    Description: The influence of the Atlantic multidecadal variability (AMV) on the North Atlantic storm track and eddy-driven jet in the winter season is assessed via a coordinated analysis of idealized simulations with state-of-the-art coupled models. Data used are obtained from a multimodel ensemble of AMV± experiments conducted in the framework of the Decadal Climate Prediction Project component C. These experiments are performed by nudging the surface of the Atlantic Ocean to states defined by the superimposition of observed AMV± anomalies onto the model climatology. A robust extratropical response is found in the form of a wave train extending from the Pacific to the Nordic seas. In the warm phase of the AMV compared to the cold phase, the Atlantic storm track is typically contracted and less extended poleward and the low-level jet is shifted toward the equator in the eastern Atlantic. Despite some robust features, the picture of an uncertain and model-dependent response of the Atlantic jet emerges and we demonstrate a link between model bias and the character of the jet response.
    Description: Published
    Description: 347-360
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2022-06-21
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(6),(2022): 1191-1204, https://doi.org/10.1175/jpo-d-21-0242.1.
    Description: A simplified quasigeostrophic (QG) analytical model together with an idealized numerical model are used to study the effect of uneven ice–ocean stress on the temporal evolution of the geostrophic current under sea ice. The tendency of the geostrophic velocity in the QG model is given as a function of the lateral gradient of vertical velocity and is further related to the ice–ocean stress with consideration of a surface boundary layer. Combining the analytical and numerical solutions, we demonstrate that the uneven stress between the ice and an initially surface-intensified, laterally sheared geostrophic current can drive an overturning circulation to trigger the displacement of isopycnals and modify the vertical structure of the geostrophic velocity. When the near-surface isopycnals become tilted in the opposite direction to the deeper ones, a subsurface velocity core is generated (via geostrophic setup). This mechanism should help understand the formation of subsurface currents in the edge of Chukchi and Beaufort Seas seen in observations. Furthermore, our solutions reveal a reversed flow extending from the bottom to the middepth, suggesting that the ice-induced overturning circulation potentially influences the currents in the deep layers of the Arctic Ocean, such as the Atlantic Water boundary current.
    Description: This work was funded by the National Key Research and Development Program of China (Grant 2017YFA0604600), the National Natural Science Foundation of China (Grant 41676019), the Fundamental Research Funds for the Central Universities (Grant 2019B81214), the Postgraduate Research and Practice Innovation Program of Jiangsu Province (Grant KYCX19_0384), and the National Science Foundation (MAS, Grants OPP-1822334, OCE-2122633).
    Keywords: Arctic ; Sea ice ; Channel flows ; Vertical motion ; Ekman pumping ; Idealized models ; Quasigeostrophic models
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-10-14
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marshall, T., Granger, J., Casciotti, K. L., Dahnke, K., Emeis, K.-C., Marconi, D., McIlvin, M. R., Noble, A. E., Saito, M. A., Sigman, D. M., & Fawcett, S. E. The Angola Gyre is a hotspot of dinitrogen fixation in the South Atlantic Ocean. Communications Earth & Environment, 3(1), (2022): 151, https://doi.org/10.1038/s43247-022-00474-x.
    Description: Biological dinitrogen fixation is the major source of new nitrogen to marine systems and thus essential to the ocean’s biological pump. Constraining the distribution and global rate of dinitrogen fixation has proven challenging owing largely to uncertainty surrounding the controls thereon. Existing South Atlantic dinitrogen fixation rate estimates vary five-fold, with models attributing most dinitrogen fixation to the western basin. From hydrographic properties and nitrate isotope ratios, we show that the Angola Gyre in the eastern tropical South Atlantic supports the fixation of 1.4–5.4 Tg N.a−1, 28-108% of the existing (highly uncertain) estimates for the basin. Our observations contradict model diagnoses, revealing a substantial input of newly-fixed nitrogen to the tropical eastern basin and no dinitrogen fixation west of 7.5˚W. We propose that dinitrogen fixation in the South Atlantic occurs in hotspots controlled by the overlapping biogeography of excess phosphorus relative to nitrogen and bioavailable iron from margin sediments. Similar conditions may promote dinitrogen fixation in analogous ocean regions. Our analysis suggests that local iron availability causes the phosphorus-driven coupling of oceanic dinitrogen fixation to nitrogen loss to vary on a regional basis.
    Description: This work was supported by the South African National Research Foundation (114673 and 130826 to T.M., 115335, 116142 and 129320 to S.E.F.); the US National Science Foundation (CAREER award, OCE-1554474 to J.G., OCE-1736652 to D.M.S. and K.L.C., OCE-05-26277 to K.L.C.); the German Federal Agency for Education and Research (DAAD-SPACES 57371082 to T.M.); the Royal Society (FLAIR fellowship to S.E.F.); and the University of Cape Town (T.M., J.G., S.E.F.). The authors also recognize the support of the South African Department of Science and Innovation’s Biogeochemistry Research Infrastructure Platform (BIOGRIP).
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  • 5
    Publication Date: 2022-10-12
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(10), (2022): 2431-2444, https://doi.org/10.1175/jpo-d-22-0024.1.
    Description: A three-dimensional inertial model that conserves quasigeostrophic potential vorticity is proposed for wind-driven coastal upwelling along western boundaries. The dominant response to upwelling favorable winds is a surface-intensified baroclinic meridional boundary current with a subsurface countercurrent. The width of the current is not the baroclinic deformation radius but instead scales with the inertial boundary layer thickness while the depth scales as the ratio of the inertial boundary layer thickness to the baroclinic deformation radius. Thus, the boundary current scales depend on the stratification, wind stress, Coriolis parameter, and its meridional variation. In contrast to two-dimensional wind-driven coastal upwelling, the source waters that feed the Ekman upwelling are provided over the depth scale of this baroclinic current through a combination of onshore barotropic flow and from alongshore in the narrow boundary current. Topography forces an additional current whose characteristics depend on the topographic slope and width. For topography wider than the inertial boundary layer thickness the current is bottom intensified, while for narrow topography the current is wave-like in the vertical and trapped over the topography within the inertial boundary layer. An idealized primitive equation numerical model produces a similar baroclinic boundary current whose vertical length scale agrees with the theoretical scaling for both upwelling and downwelling favorable winds.
    Description: This research is supported in part by the China Scholarship Council (201906330102). H. G. is financially supported by the China Scholarship Council to study at WHOI for 2 years as a guest student. M.S. is supported by the National Science Foundation Grant OCE-1922538. Z. C. is supported by the ‘Taishan/Aoshan’ Talents program (2017ASTCPES05) the Fundamental Research Funds for the Central Universities (202072001).
    Description: 2023-03-30
    Keywords: Ekman pumping/transport ; Upwelling/downwelling ; Coastal flows
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  • 6
    Publication Date: 2022-10-12
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Struve, T., Wilson, D., Hines, S., Adkins, J., & van de Flierdt, T. A deep Tasman outflow of Pacific waters during the last glacial period. Nature Communications, 13(1), (2022): 3763, https://doi.org/10.1038/s41467-022-31116-7.
    Description: The interoceanic exchange of water masses is modulated by flow through key oceanic choke points in the Drake Passage, the Indonesian Seas, south of Africa, and south of Tasmania. Here, we use the neodymium isotope signature (εNd) of cold-water coral skeletons from intermediate depths (1460‒1689 m) to trace circulation changes south of Tasmania during the last glacial period. The key feature of our dataset is a long-term trend towards radiogenic εNd values of ~−4.6 during the Last Glacial Maximum and Heinrich Stadial 1, which are clearly distinct from contemporaneous Southern Ocean εNd of ~−7. When combined with previously published radiocarbon data from the same corals, our results indicate that a unique radiogenic and young water mass was present during this time. This scenario can be explained by a more vigorous Pacific overturning circulation that supported a deeper outflow of Pacific waters, including North Pacific Intermediate Water, through the Tasman Sea.
    Description: The authors acknowledge financial support from the Grantham Institute of Climate Change and the Environment (T.v.d.F. and T.S.), the Ministry for Science and Culture of the State of Lower Saxony (T.S.), Marie Curie Reintegration grant IRG 230828 (T.v.d.F.), Leverhulme Trust grant RPG-398 (T.v.d.F.), Natural Environment Research Council grants NE/F016751/1 (T.v.d.F.), NE/N001141/1 (T.v.d.F. and D.J.W.), and NE/T011440/1 (D.J.W.), and National Science Foundation grant OCE-1503129 (J.F.A. and S.K.V.H.). Open Access funding is enabled by the DFG open access publication fund and the Carl von Ossietzky University Oldenburg.
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  • 7
    Publication Date: 2022-10-12
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(10), (2022): 2325–2341, https://doi.org/10.1175/jpo-d-21-0015.1.
    Description: The ocean surface boundary layer is a gateway of energy transfer into the ocean. Wind-driven shear and meteorologically forced convection inject turbulent kinetic energy into the surface boundary layer, mixing the upper ocean and transforming its density structure. In the absence of direct observations or the capability to resolve subgrid-scale 3D turbulence in operational ocean models, the oceanography community relies on surface boundary layer similarity scalings (BLS) of shear and convective turbulence to represent this mixing. Despite their importance, near-surface mixing processes (and ubiquitous BLS representations of these processes) have been undersampled in high-energy forcing regimes such as the Southern Ocean. With the maturing of autonomous sampling platforms, there is now an opportunity to collect high-resolution spatial and temporal measurements in the full range of forcing conditions. Here, we characterize near-surface turbulence under strong wind forcing using the first long-duration glider microstructure survey of the Southern Ocean. We leverage these data to show that the measured turbulence is significantly higher than standard shear-convective BLS in the shallower parts of the surface boundary layer and lower than standard shear-convective BLS in the deeper parts of the surface boundary layer; the latter of which is not easily explained by present wave-effect literature. Consistent with the CBLAST (Coupled Boundary Layers and Air Sea Transfer) low winds experiment, this bias has the largest magnitude and spread in the shallowest 10% of the actively mixing layer under low-wind and breaking wave conditions, when relatively low levels of turbulent kinetic energy (TKE) in surface regime are easily biased by wave events.
    Description: This paper is VIMS Contribution 4103. Computational resources were provided by the VIMS Ocean-Atmosphere and Climate Change Research Fund. AUSSOM was supported by the OCE Division of the National Science Foundation (1558639).
    Keywords: Turbulence ; Wind shear ; Boundary layer ; Parameterization
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  • 8
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sil, S., Gangopadhyay, A., Gawarkiewicz, G., & Pramanik, S. Shifting seasonality of cyclones and western boundary current interactions in Bay of Bengal as observed during Amphan and Fani. Scientific Reports, 11(1), (2021): 22052 https://doi.org/10.1038/s41598-021-01607-6.
    Description: In recent years, the seasonal patterns of Tropical Cyclones (TC) in the Bay of Bengal have been shifting. While tropical depressions have been common in March–May (spring), they typically have been relatively weaker than the TCs during October–December. Here we show that the spatial pattern of recent warming trends during the last two decades in the southwestern Bay has allowed for stronger springtime pre-monsoon cyclones such as Amphan (May 2020, Super Cyclone) and Fani (April–May 2019, Extremely Severe Cyclone). The tracks of the pre-monsoon cyclones shifted westward, concurrent with an increasing rate of warming. This shift allowed both Fani and Amphan tracks to cross the northeastward warm Western Boundary Current (WBC) and associated warm anti-cyclonic eddies, while the weaker Viyaru (April 2013, Cyclonic Storm) did not interact with the WBC. A quantitative model linking the available along-track heat potential to cyclone’s intensity is developed to understand the impact of the WBC on cyclone intensification. The influence of the warming WBC and associated anti-cyclonic eddies will likely result in much stronger springtime TCs becoming relatively common in the future.
    Description: The authors gratefully acknowledge the financial and infrastructural support from the Indian Institute of Technology Bhubaneswar to carry out this research. SS acknowledges the financial assistance from Science and Engineering Research Board (SERB), Government of India (Grant No. CRG/2019/005842). All the figures are prepared using MATLAB. AG and SS appreciate the support of SERB's VAJRA Faculty Scheme (VJR/2018/000108) for the initiation of this collaborative work between SMAST and IITBBS. AG also acknowledges partial support from NSF (OCE 1851242) in completing this manuscript. GG was supported by a Grant from the Office of Naval Research as part of the Task Force Ocean initiative.
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  • 9
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 102(10), (2021): E1897–E1935, https://doi.org/10.1175/BAMS-D-19-0316.1.
    Description: Life on Earth vitally depends on the availability of water. Human pressure on freshwater resources is increasing, as is human exposure to weather-related extremes (droughts, storms, floods) caused by climate change. Understanding these changes is pivotal for developing mitigation and adaptation strategies. The Global Climate Observing System (GCOS) defines a suite of essential climate variables (ECVs), many related to the water cycle, required to systematically monitor Earth’s climate system. Since long-term observations of these ECVs are derived from different observation techniques, platforms, instruments, and retrieval algorithms, they often lack the accuracy, completeness, and resolution, to consistently characterize water cycle variability at multiple spatial and temporal scales. Here, we review the capability of ground-based and remotely sensed observations of water cycle ECVs to consistently observe the hydrological cycle. We evaluate the relevant land, atmosphere, and ocean water storages and the fluxes between them, including anthropogenic water use. Particularly, we assess how well they close on multiple temporal and spatial scales. On this basis, we discuss gaps in observation systems and formulate guidelines for future water cycle observation strategies. We conclude that, while long-term water cycle monitoring has greatly advanced in the past, many observational gaps still need to be overcome to close the water budget and enable a comprehensive and consistent assessment across scales. Trends in water cycle components can only be observed with great uncertainty, mainly due to insufficient length and homogeneity. An advanced closure of the water cycle requires improved model–data synthesis capabilities, particularly at regional to local scales.
    Description: WD acknowledges ESA’s QA4EO (ISMN) and CCI Soil Moisture projects. WD, CRV, AG, and KL acknowledge the G3P project, which has received funding from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement 870353. MIH and MS acknowledge ESA’s CCI Water Vapour project. MS and RH acknowledges the support by the EUMETSAT member states through CM SAF. DGM acknowledges support from the European Research Council (ERC) under Grant Agreement 715254 (DRY–2–DRY). Part of this research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004).
    Description: 2022-04-01
    Keywords: Hydrologic cycle ; Satellite observations ; Surface fluxes ; Surface observations ; Water masses/storage ; Water budget/balance
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  • 10
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mayorova, T. D., Hammar, K., Jung, J. H., Aronova, M. A., Zhang, G., Winters, C. A., Reese, T. S., & Smith, C. L. Placozoan fiber cells: mediators of innate immunity and participants in wound healing. Scientific Reports, 11(1), (2021): 23343, https://doi.org/10.1038/s41598-021-02735-9.
    Description: Placozoa is a phylum of non-bilaterian marine animals. These small, flat organisms adhere to the substrate via their densely ciliated ventral epithelium, which mediates mucociliary locomotion and nutrient uptake. They have only six morphological cell types, including one, fiber cells, for which functional data is lacking. Fiber cells are non-epithelial cells with multiple processes. We used electron and light microscopic approaches to unravel the roles of fiber cells in Trichoplax adhaerens, a representative member of the phylum. Three-dimensional reconstructions of serial sections of Trichoplax showed that each fiber cell is in contact with several other cells. Examination of fiber cells in thin sections and observations of live dissociated fiber cells demonstrated that they phagocytose cell debris and bacteria. In situ hybridization confirmed that fiber cells express genes involved in phagocytic activity. Fiber cells also are involved in wound healing as evidenced from microsurgery experiments. Based on these observations we conclude that fiber cells are multi-purpose macrophage-like cells. Macrophage-like cells have been described in Porifera, Ctenophora, and Cnidaria and are widespread among Bilateria, but our study is the first to show that Placozoa possesses this cell type. The phylogenetic distribution of macrophage-like cells suggests that they appeared early in metazoan evolution.
    Description: Open Access funding provided by the National Institutes of Health (NIH).
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  • 11
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Brun, N. R., Salanga, M. C., Mora-Zamorano, F. X., Lamb, D. C., Goldstone, J. V., & Stegeman, J. J. Orphan cytochrome P450 20a1 CRISPR/Cas9 mutants and neurobehavioral phenotypes in zebrafish. Scientific Reports, 11(1), (2021): 23892, https://doi.org/10.1038/s41598-021-03068-3.
    Description: Orphan cytochrome P450 (CYP) enzymes are those for which biological substrates and function(s) are unknown. Cytochrome P450 20A1 (CYP20A1) is the last human orphan P450 enzyme, and orthologs occur as single genes in every vertebrate genome sequenced to date. The occurrence of high levels of CYP20A1 transcripts in human substantia nigra and hippocampus and abundant maternal transcripts in zebrafish eggs strongly suggest roles both in the brain and during early embryonic development. Patients with chromosome 2 microdeletions including CYP20A1 show hyperactivity and bouts of anxiety, among other conditions. Here, we created zebrafish cyp20a1 mutants using CRISPR/Cas9, providing vertebrate models with which to study the role of CYP20A1 in behavior and other neurodevelopmental functions. The homozygous cyp20a1 null mutants exhibited significant behavioral differences from wild-type zebrafish, both in larval and adult animals. Larval cyp20a1-/- mutants exhibited a strong increase in light-simulated movement (i.e., light–dark assay), which was interpreted as hyperactivity. Further, the larvae exhibited mild hypoactivity during the adaptation period of the optomotor assays. Adult cyp20a1 null fish showed a pronounced delay in adapting to new environments, which is consistent with an anxiety paradigm. Taken together with our earlier morpholino cyp20a1 knockdown results, the results described herein suggest that the orphan CYP20A1 has a neurophysiological role.
    Description: These studies were supported in part by the Boston University Superfund Research Program NIH 5P42ES007381 (MCS, NRB, FXM, JVG, JJS), the Woods Hole Center for Oceans and Human Health (NIH: P01ES021923 and P01ES028938; NSF: OCE-1314642 and OCE-1840381; NRB and JJS), and EBI/EMBL Medakatox NIEHS R01ES029917 (JVG). DCL was funded by a UK-US Fulbright Scholarship.
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  • 12
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Beman, J. M., Vargas, S. M., Wilson, J. M., Perez-Coronel, E., Karolewski, J. S., Vazquez, S., Yu, A., Cairo, A. E., White, M. E., Koester, I., Aluwihare, L. I., & Wankel, S. D. Substantial oxygen consumption by aerobic nitrite oxidation in oceanic oxygen minimum zones. Nature Communications, 12(1), (2021): 7043, https://doi.org/10.1038/s41467-021-27381-7.
    Description: Oceanic oxygen minimum zones (OMZs) are globally significant sites of biogeochemical cycling where microorganisms deplete dissolved oxygen (DO) to concentrations 〈20 µM. Amid intense competition for DO in these metabolically challenging environments, aerobic nitrite oxidation may consume significant amounts of DO and help maintain low DO concentrations, but this remains unquantified. Using parallel measurements of oxygen consumption rates and 15N-nitrite oxidation rates applied to both water column profiles and oxygen manipulation experiments, we show that the contribution of nitrite oxidation to overall DO consumption systematically increases as DO declines below 2 µM. Nitrite oxidation can account for all DO consumption only under DO concentrations 〈393 nM found in and below the secondary chlorophyll maximum. These patterns are consistent across sampling stations and experiments, reflecting coupling between nitrate reduction and nitrite-oxidizing Nitrospina with high oxygen affinity (based on isotopic and omic data). Collectively our results demonstrate that nitrite oxidation plays a pivotal role in the maintenance and biogeochemical dynamics of OMZs.
    Description: This work was supported by NSF CAREER Grant OCE-1555375 to J.M.B. Metagenome sequencing was supported by the UCMEXUS-CONACyT Collaborative Grants Program (joint awards to J.M.B. and José García Maldonado).
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  • 13
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remple, K. L., Silbiger, N. J., Quinlan, Z. A., Fox, M. D., Kelly, L. W., Donahue, M. J., & Nelson, C. E. Coral reef biofilm bacterial diversity and successional trajectories are structured by reef benthic organisms and shift under chronic nutrient enrichment. Npj Biofilms and Microbiomes, 7(1), (2021): 84, https://doi.org/10.1038/s41522-021-00252-1.
    Description: Work on marine biofilms has primarily focused on host-associated habitats for their roles in larval recruitment and disease dynamics; little is known about the factors regulating the composition of reef environmental biofilms. To contrast the roles of succession, benthic communities and nutrients in structuring marine biofilms, we surveyed bacteria communities in biofilms through a six-week succession in aquaria containing macroalgae, coral, or reef sand factorially crossed with three levels of continuous nutrient enrichment. Our findings demonstrate how biofilm successional trajectories diverge from temporal dynamics of the bacterioplankton and how biofilms are structured by the surrounding benthic organisms and nutrient enrichment. We identify a suite of biofilm-associated bacteria linked with the orthogonal influences of corals, algae and nutrients and distinct from the overlying water. Our results provide a comprehensive characterization of marine biofilm successional dynamics and contextualize the impact of widespread changes in reef community composition and nutrient pollution on biofilm community structure.
    Description: This work was supported through grants from the National Science Foundation for Biological Oceanography (1923877 to C.E.N. and M.J.D., 1949033 to C.E.N. and 2118687 to L.W.K., and 1924281 to N.J.S.) and the National Fish and Wildlife Foundation (grant no. 44447 to C.E.N.). This paper is funded in part by the National Oceanic and Atmospheric Administration, Project A/AS-1, which is sponsored by the University of Hawaii Sea Grant College Program, SOEST, under Institutional Grant No. NA18OAR4170076 from NOAA Office of Sea Grant, Department of Commerce. This is CSUN marine biology contribution #365, UH Sea Grant contribution UNIHI-SEAGRANT-JC-21-06, and UH SOEST contribution 11435.
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  • 14
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in James, B. D., Kimmins, K. M., Nguyen, M.-T., Lausch, A. J., & Sone, E. D. Attachment of zebra and quagga mussel adhesive plaques to diverse substrates. Scientific Reports, 11(1), (2021): 23998, https://doi.org/10.1038/s41598-021-03227-6.
    Description: Like marine mussels, freshwater zebra and quagga mussels adhere via the byssus, a proteinaceous attachment apparatus. Attachment to various surfaces allows these invasive mussels to rapidly spread, however the adhesion mechanism is not fully understood. While marine mussel adhesion mechanics has been studied at the individual byssal-strand level, freshwater mussel adhesion has only been characterized through whole-mussel detachment, without direct interspecies comparisons on different substrates. Here, adhesive strength of individual quagga and zebra mussel byssal plaques were measured on smooth substrates with varying hydrophobicity—glass, PVC, and PDMS. With increased hydrophobicity of substrates, adhesive failures occurred more frequently, and mussel adhesion strength decreased. A new failure mode termed 'footprint failure' was identified, where failure appeared to be adhesive macroscopically, but a microscopic residue remained on the surface. Zebra mussels adhered stronger and more frequently on PDMS than quagga mussels. While their adhesion strengths were similar on PVC, there were differences in the failure mode and the plaque-substrate interface ultrastructure. Comparisons with previous marine mussel studies demonstrated that freshwater mussels adhere with comparable strength despite known differences in protein composition. An improved understanding of freshwater mussel adhesion mechanics may help explain spreading dynamics and will be important in developing effective antifouling surfaces.
    Description: This work was supported by Discovery grant (#342455) to EDS from the National Sciences and Engineering Research Council (NSERC) of Canada (RGPIN-2019-06210).
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  • 15
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, M. D., Swaminathan, S. D., Nixon, E. N., Paul, V. J., & Altieri, A. H. Differential susceptibility of reef-building corals to deoxygenation reveals remarkable hypoxia tolerance. Scientific Reports, 11(1), (2021): 23168, https://doi.org/10.1038/s41598-021-01078-9.
    Description: Ocean deoxygenation threatens the persistence of coastal ecosystems worldwide. Despite an increasing awareness that coastal deoxygenation impacts tropical habitats, there remains a paucity of empirical data on the effects of oxygen limitation on reef-building corals. To address this knowledge gap, we conducted laboratory experiments with ecologically important Caribbean corals Acropora cervicornis and Orbicella faveolata. We tested the effects of continuous exposure to conditions ranging from extreme deoxygenation to normoxia (~ 1.0 to 6.25 mg L−1 dissolved oxygen) on coral bleaching, photophysiology, and survival. Coral species demonstrated markedly different temporal resistance to deoxygenation, and within a species there were minimal genotype-specific treatment effects. Acropora cervicornis suffered tissue loss and mortality within a day of exposure to severe deoxygenation (~ 1.0 mg L−1), whereas O. faveolata remained unaffected after 11 days of continuous exposure to 1.0 mg L−1. Intermediate deoxygenation treatments (~ 2.25 mg L−1, ~ 4.25 mg L−1) elicited minimal responses in both species, indicating a low oxygen threshold for coral mortality and coral resilience to oxygen concentrations that are lethal for other marine organisms. These findings demonstrate the potential for variability in species-specific hypoxia thresholds, which has important implications for our ability to predict how coral reefs may be affected as ocean deoxygenation intensifies. With deoxygenation emerging as a critical threat to tropical habitats, there is an urgent need to incorporate deoxygenation into coral reef research, management, and action plans to facilitate better stewardship of coral reefs in an era of rapid environmental change.
    Description: This research was funded by an award from the National Oceanic and Atmospheric Administration’s National Centers for Coastal Ocean Science Competitive Research Program to AA, MJ, and VP (NA18NOS4780170) through the University of Florida. MJ was funded by postdoctoral fellow awards from the Smithsonian Institution's Marine Global Earth Observatory (MarineGEO), the Smithsonian Marine Station, and Woods Hole Oceanographic Institution. This material is based on work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1842473. This is contribution 259 from the Coastal Hypoxia Research Program, 93 from the Smithsonian’s MarineGEO and Tennenbaum Marine Observatories Network, and 1167 from the Smithsonian Marine Station at Fort Pierce.
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  • 16
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 102(10), (2021): E1936–E1951, https://doi.org/10.1175/BAMS-D-20-0113.1.
    Description: In the Bay of Bengal, the warm, dry boreal spring concludes with the onset of the summer monsoon and accompanying southwesterly winds, heavy rains, and variable air–sea fluxes. Here, we summarize the 2018 monsoon onset using observations collected through the multinational Monsoon Intraseasonal Oscillations in the Bay of Bengal (MISO-BoB) program between the United States, India, and Sri Lanka. MISO-BoB aims to improve understanding of monsoon intraseasonal variability, and the 2018 field effort captured the coupled air–sea response during a transition from active-to-break conditions in the central BoB. The active phase of the ∼20-day research cruise was characterized by warm sea surface temperature (SST 〉 30°C), cold atmospheric outflows with intermittent heavy rainfall, and increasing winds (from 2 to 15 m s−1). Accumulated rainfall exceeded 200 mm with 90% of precipitation occurring during the first week. The following break period was both dry and clear, with persistent 10–12 m s−1 wind and evaporation of 0.2 mm h−1. The evolving environmental state included a deepening ocean mixed layer (from ∼20 to 50 m), cooling SST (by ∼1°C), and warming/drying of the lower to midtroposphere. Local atmospheric development was consistent with phasing of the large-scale intraseasonal oscillation. The upper ocean stores significant heat in the BoB, enough to maintain SST above 29°C despite cooling by surface fluxes and ocean mixing. Comparison with reanalysis indicates biases in air–sea fluxes, which may be related to overly cool prescribed SST. Resolution of such biases offers a path toward improved forecasting of transition periods in the monsoon.
    Description: This work was supported through the U.S. Office of Naval Research’s Departmental Research Initiative: Monsoon Intraseasonal Oscillations in the Bay of Bengal, the Indian Ministry of Earth Science’s Ocean Mixing and Monsoons Program, and the Sri Lankan National Aquatic Resources Research and Development Agency. We thank the Captain and crew of the R/V Thompson for their help in data collection. Surface atmospheric fields included fluxes were quality controlled and processed by the Boundary Layer Observations and Processes Team within the NOAA Physical Sciences Laboratory. Forecast analysis was completed by India Meteorological Department. Drone image was taken by Shreyas Kamat with annotations by Gualtiero Spiro Jaeger. We also recognize the numerous researchers who supported cruise- and land-based measurements. This work represents Lamont-Doherty Earth Observatory contribution number 8503, and PMEL contribution number 5193.
    Description: 2022-04-01
    Keywords: Atmosphere-ocean interaction ; Monsoons ; In situ atmospheric observations ; In situ oceanic observations
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  • 17
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tyne, R. L., Barry, P. H., Lawson, M., Byrne, D. J., Warr, O., Xie, H., Hillegonds, D. J., Formolo, M., Summers, Z. M., Skinner, B., Eiler, J. M., & Ballentine, C. J. Rapid microbial methanogenesis during CO2 storage in hydrocarbon reservoirs. Nature, 600(7890), (2021): 670-674, https://doi.org/10.1038/s41586-021-04153-3.
    Description: Carbon capture and storage (CCS) is a key technology to mitigate the environmental impact of carbon dioxide (CO2) emissions. An understanding of the potential trapping and storage mechanisms is required to provide confidence in safe and secure CO2 geological sequestration1,2. Depleted hydrocarbon reservoirs have substantial CO2 storage potential1,3, and numerous hydrocarbon reservoirs have undergone CO2 injection as a means of enhanced oil recovery (CO2-EOR), providing an opportunity to evaluate the (bio)geochemical behaviour of injected carbon. Here we present noble gas, stable isotope, clumped isotope and gene-sequencing analyses from a CO2-EOR project in the Olla Field (Louisiana, USA). We show that microbial methanogenesis converted as much as 13–19% of the injected CO2 to methane (CH4) and up to an additional 74% of CO2 was dissolved in the groundwater. We calculate an in situ microbial methanogenesis rate from within a natural system of 73–109 millimoles of CH4 per cubic metre (standard temperature and pressure) per year for the Olla Field. Similar geochemical trends in both injected and natural CO2 fields suggest that microbial methanogenesis may be an important subsurface sink of CO2 globally. For CO2 sequestration sites within the environmental window for microbial methanogenesis, conversion to CH4 should be considered in site selection.
    Description: R.L.T. was supported by a Natural Environment Research Council studentship (grant reference NE/L002612/1). C.J.B. and P.H.B. acknowledge A. Regberg and B. Meurer for their support of the project and help with sample collection. C.J.B. was part supported by an Earth4D CIFAR fellowship. P.H.B. was supported by NSF awards 1923915 and 2015789. O.W. was supported by Natural Sciences and Engineering Research Council of Canada Discovery and Accelerator grants awarded to the Sherwood Lollar research group and acknowledges B. Sherwood Lollar’s support for the project. Z.M.S. acknowledges J. Biddle and G. Christman for their help in generating the microbial data.
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  • 18
    Publication Date: 2022-08-03
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schmidbaur, H., Kawaguchi, A., Clarence, T., Fu, X., Hoang, O. P., Zimmermann, B., Ritschard, E. A., Weissenbacher, A., Foster, J. S., Nyholm, S., Bates, P. A., Albertin, C. B., Tanaka, E., & Simakov, O. Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization. Nature Communications, 13(1), (2022): 2172, https://doi.org/10.1038/s41467-022-29694-7.
    Description: Coleoid cephalopods (squid, cuttlefish, octopus) have the largest nervous system among invertebrates that together with many lineage-specific morphological traits enables complex behaviors. The genomic basis underlying these innovations remains unknown. Using comparative and functional genomics in the model squid Euprymna scolopes, we reveal the unique genomic, topological, and regulatory organization of cephalopod genomes. We show that coleoid cephalopod genomes have been extensively restructured compared to other animals, leading to the emergence of hundreds of tightly linked and evolutionary unique gene clusters (microsyntenies). Such novel microsyntenies correspond to topological compartments with a distinct regulatory structure and contribute to complex expression patterns. In particular, we identify a set of microsyntenies associated with cephalopod innovations (MACIs) broadly enriched in cephalopod nervous system expression. We posit that the emergence of MACIs was instrumental to cephalopod nervous system evolution and propose that microsyntenic profiling will be central to understanding cephalopod innovations.
    Description: H.S., O.P.H., E.R., and O.S. were supported by the Austrian Science Fund (FWF) grant P30686-B29. O.S. was supported by Whitman Center Early Career Fellowship (Frank R. Lillie Quasi-Endowment Fund, L. & A. Colwin Summer Research Fellowship, Bell Research Award in Tissue Engineering). H.S. was supported by the short-term grant abroad (KWA) of the University of Vienna. H.S. and O.S. were supported by the University of Chicago/Vienna Strategic Partnership Programme Mobility Grant. A.K. was supported by the JSPS Postdoctoral Fellowship for Overseas Researchers program from Japan. C.B.A. was supported by the Hibbitt Early Career Fellowship. Eggs and paralarvae of E. scolopes were generated in part by support by the NASA Space Biology 80NSSC18K1465 awarded to J.S.F. S.V.N. was supported by the National Science Foundation IOS-1557914. This work was supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC0001003), the UK Medical Research Council (FC001003), and the Wellcome Trust (FC001003).
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  • 19
    Publication Date: 2022-08-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Caudron, C., Vandemeulebrouck, J., & Sohn, R. A. Turbulence-induced bubble nucleation in hydrothermal fluids beneath Yellowstone Lake. Communications Earth & Environment, 3(1), (2022): 103, https://doi.org/10.1038/s43247-022-00417-6.
    Description: Volcanic systems generate large amounts of gas, and understanding gas fluxes is a fundamental aspect of volcanology and hazard mitigation. Volcanic gases can be challenging to measure, but acoustic methods hold promise in underwater environments because gas bubbles are powerful sound sources. We deployed an acoustic system to study the nature of gas discharge at a large (~30 MW) thermal field on the floor of Yellowstone Lake, which has experienced numerous hydrothermal explosions since the last glaciation (~13.4 ka). We find that small (〈10 Pa) turbulent flow instabilities trigger the nucleation of CO2 bubbles in the saturated fluids. The observation of CO2 bubbles nucleating in hydrothermal fluids due to small pressure perturbations informs our understanding of hydrothermal explosions in Yellowstone Lake, and demonstrates that acoustic data in underwater environments can provide insight into the stability of gas-rich systems, as well as gas fluxes.
    Description: This research was supported by the National Science Foundation grant EAR-1516361 to R.A.S. All work in Yellowstone National Park was completed under an authorized research permit (YELL-2018-SCI-7018). We also acknowledge the IRGA 2021 Volquan project (funded by Université Grenoble Alpes) and Thomas Jefferson Fund Face Foundation (project TJF20_009 ‘Quantifying underwater volcano degassing using novel seismo-acoustic approaches’).
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  • 20
    Publication Date: 2022-09-25
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(4), (2022): 597–616, https://doi.org/10.1175/jpo-d-21-0121.1.
    Description: We provide a first-principles analysis of the energy fluxes in the oceanic internal wave field. The resulting formula is remarkably similar to the renowned phenomenological formula for the turbulent dissipation rate in the ocean, which is known as the finescale parameterization. The prediction is based on the wave turbulence theory of internal gravity waves and on a new methodology devised for the computation of the associated energy fluxes. In the standard spectral representation of the wave energy density, in the two-dimensional vertical wavenumber–frequency (m–ω) domain, the energy fluxes associated with the steady state are found to be directed downscale in both coordinates, closely matching the finescale parameterization formula in functional form and in magnitude. These energy transfers are composed of a “local” and a “scale-separated” contributions; while the former is quantified numerically, the latter is dominated by the induced diffusion process and is amenable to analytical treatment. Contrary to previous results indicating an inverse energy cascade from high frequency to low, at odds with observations, our analysis of all nonzero coefficients of the diffusion tensor predicts a direct energy cascade. Moreover, by the same analysis fundamental spectra that had been deemed “no-flux” solutions are reinstated to the status of “constant-downscale-flux” solutions. This is consequential for an understanding of energy fluxes, sources, and sinks that fits in the observational paradigm of the finescale parameterization, solving at once two long-standing paradoxes that had earned the name of “oceanic ultraviolet catastrophe.”
    Description: The authors gratefully acknowledge support from the ONR Grant N00014-17-1-2852. YL gratefully acknowledges support from NSF DMS Award 2009418.
    Description: 2022-09-25
    Keywords: Ocean ; Gravity waves ; Nonlinear dynamics ; Ocean dynamics ; Mixing ; Fluxes ; Isopycnal coordinates ; Nonlinear models
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  • 21
    Publication Date: 2022-08-12
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(7), (2022): 1053–1083, https://doi.org/10.1175/jtech-d-21-0167.1.
    Description: The Ka-band Radar Interferometer (KaRIn) on the Surface Water and Ocean Topography (SWOT) satellite will revolutionize satellite altimetry by measuring sea surface height (SSH) with unprecedented accuracy and resolution across two 50-km swaths separated by a 20-km gap. The original plan to provide an SSH product with a footprint diameter of 1 km has changed to providing two SSH data products with footprint diameters of 0.5 and 2 km. The swath-averaged standard deviations and wavenumber spectra of the uncorrelated measurement errors for these footprints are derived from the SWOT science requirements that are expressed in terms of the wavenumber spectrum of SSH after smoothing with a filter cutoff wavelength of 15 km. The availability of two-dimensional fields of SSH within the measurement swaths will provide the first spaceborne estimates of instantaneous surface velocity and vorticity through the geostrophic equations. The swath-averaged standard deviations of the noise in estimates of velocity and vorticity derived by propagation of the uncorrelated SSH measurement noise through the finite difference approximations of the derivatives are shown to be too large for the SWOT data products to be used directly in most applications, even for the coarsest footprint diameter of 2 km. It is shown from wavenumber spectra and maps constructed from simulated SWOT data that additional smoothing will be required for most applications of SWOT estimates of velocity and vorticity. Equations are presented for the swath-averaged standard deviations and wavenumber spectra of residual noise in SSH and geostrophically computed velocity and vorticity after isotropic two-dimensional smoothing for any user-defined smoother and filter cutoff wavelength of the smoothing.
    Description: This research was supported by NASA Grant NNX16AH76G.
    Keywords: Sea level ; Altimetry ; Remote sensing ; Satellite observations ; Error analysis
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  • 22
    Publication Date: 2022-08-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sievert, S. M., Buehring, S., Gulmann, L. K., Hinrichs, K.-U., Ristova, P. P., & Gomez-Saez, G. Fluid flow stimulates chemoautotrophy in hydrothermally influenced coastal sediments. Communications Earth & Environment, 3(1), (2022): 96, https://doi.org/10.1038/s43247-022-00426-5.
    Description: Hydrothermalism in coastal sediments strongly impacts biogeochemical processes and supports chemoautotrophy. Yet, the effect of fluid flow on microbial community composition and rates of chemoautotrophic production is unknown because rate measurements under natural conditions are difficult, impeding an assessment of the importance of these systems. Here, in situ incubations controlling fluid flow along a transect of three geochemically distinct locations at a shallow-water hydrothermal system off Milos (Greece) show that Campylobacteria dominated chemoautotrophy in the presence of fluid flow. Based on injected 13C-labelled dissolved inorganic carbon and its incorporation into fatty acids, we constrained carbon fixation to be as high as 12 µmol C cm−3 d−1, corresponding to areal rates up to 10-times higher than previously reported for coastal sediments, and showed the importance of fluid flow for supplying the necessary substrates to support chemoautotrophy. Without flow, rates were substantially lower and microbial community composition markedly shifted. Our results highlight the importance of fluid flow in shaping the composition and activity of microbial communities of shallow-water hydrothermal vents, identifying them as hotspots of microbial productivity.
    Description: Open Access funding enabled and organized by Projekt DEAL.
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  • 23
    Publication Date: 2022-08-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sufke, F., Gutjahr, M., Keigwin, L. D., Reilly, B., Giosan, L., & Lippold, J. Arctic drainage of Laurentide Ice Sheet meltwater throughout the past 14,700 years. Communications Earth & Environment, 3(1), (2022): 98, https://doi.org/10.1038/s43247-022-00428-3.
    Description: During the last deglaciation substantial volumes of meltwater from the decaying Laurentide Ice Sheet were supplied to the Arctic, Gulf of Mexico and North Atlantic along different drainage routes, sometimes as catastrophic flood events. These events are suggested to have impacted global climate, for example initiating the Younger Dryas cold period. Here we analyze the authigenic Pb isotopic composition of sediments in front of the Arctic Mackenzie Delta, a sensitive tracer for elevated freshwater runoff of the retreating Laurentide Ice Sheet. Our data reveal continuous meltwater supply to the Arctic along the Mackenzie River since the onset of the Bølling–Allerød. The strongest Lake Agassiz outflow event is observed at the end of the Bølling–Allerød close to the onset of the Younger Dryas. In context of deglacial North American runoff records from the southern and eastern outlets, our findings provide a detailed reconstruction of the deglacial drainage chronology of the disintegrating Laurentide Ice Sheet.
    Description: Open Access funding enabled and organized by Projekt DEAL.
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  • 24
    Publication Date: 2022-08-29
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1593-1611, https://doi.org/10.1175/jpo-d-21-0180.1.
    Description: This study presents novel observational estimates of turbulent dissipation and mixing in a standing meander between the Southeast Indian Ridge and the Macquarie Ridge in the Southern Ocean. By applying a finescale parameterization on the temperature, salinity, and velocity profiles collected from Electromagnetic Autonomous Profiling Explorer (EM-APEX) floats in the upper 1600 m, we estimated the intensity and spatial distribution of dissipation rate and diapycnal mixing along the float tracks and investigated the sources. The indirect estimates indicate strong spatial and temporal variability of turbulent mixing varying from O(10−6) to O(10−3) m2 s−1 in the upper 1600 m. Elevated turbulent mixing is mostly associated with the Subantarctic Front (SAF) and mesoscale eddies. In the upper 500 m, enhanced mixing is associated with downward-propagating wind-generated near-inertial waves as well as the interaction between cyclonic eddies and upward-propagating internal waves. In the study region, the local topography does not play a role in turbulent mixing in the upper part of the water column, which has similar values in profiles over rough and smooth topography. However, both remotely generated internal tides and lee waves could contribute to the upward-propagating energy. Our results point strongly to the generation of turbulent mixing through the interaction of internal waves and the intense mesoscale eddy field.
    Description: The observations were funded through grants from the Australian Research Council Discovery Project (DP170102162) and Australia’s Marine National Facility. Surface drifters were provided by Dr. Shaun Dolk of the Global Drifter Program. AC was supported by an Australian Research Council Postdoctoral Fellowship. AC, HEP, and NLB acknowledge support from the Australian Government Department of the Environment and Energy National Environmental Science Program and the ARC Centre of Excellence in Climate Extremes. KP acknowledges the support from the National Science Foundation.
    Keywords: Diapycnal mixing ; Eddies ; Fronts ; Inertia-gravity waves ; Ocean dynamics
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  • 25
    Publication Date: 2022-08-19
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Albertin, C. B., Medina-Ruiz, S., Mitros, T., Schmidbaur, H., Sanchez, G., Wang, Z. Y., Grimwood, J., Rosenthal, J. J. C., Ragsdale, C. W., Simakov, O., & Rokhsar, D. S. Genome and transcriptome mechanisms driving cephalopod evolution. Nature Communications, 13(1), (2022): 2427, https://doi.org/10.1038/s41467-022-29748-w.
    Description: Cephalopods are known for their large nervous systems, complex behaviors and morphological innovations. To investigate the genomic underpinnings of these features, we assembled the chromosomes of the Boston market squid, Doryteuthis (Loligo) pealeii, and the California two-spot octopus, Octopus bimaculoides, and compared them with those of the Hawaiian bobtail squid, Euprymna scolopes. The genomes of the soft-bodied (coleoid) cephalopods are highly rearranged relative to other extant molluscs, indicating an intense, early burst of genome restructuring. The coleoid genomes feature multi-megabase, tandem arrays of genes associated with brain development and cephalopod-specific innovations. We find that a known coleoid hallmark, extensive A-to-I mRNA editing, displays two fundamentally distinct patterns: one exclusive to the nervous system and concentrated in genic sequences, the other widespread and directed toward repetitive elements. We conclude that coleoid novelty is mediated in part by substantial genome reorganization, gene family expansion, and tissue-dependent mRNA editing.
    Description: We thank the Marine Resources Center and the Cephalopod program at the Marine Biological Laboratory for supplying D. pealeii, R. Hanlon for the image in Fig. 1a, R. Hanlon and S. Senft for help with tissue dissection, Dr. Chuck Winkler for supplying O. bimaculoides, B. Burford and W. Gilly for assistance with D. opalescens collection, and the Vienna Zoo (Tiergarten Schönbrunn), particularly R. Halbauer, A. Weissenbacher, and the aquarist team for E. scolopes husbandry. Computation was done using the Life Science Cluster at the University of Vienna. This project began with generous funding from the Grass Foundation, administered by the MBL through J.J.R. It was also supported by Austrian Science fund FWF (P30686-B29) to H.S. and O.S., the Whitman Center Early Career Fellowship to O.S., the Okinawa Institute of Science and Technology Molecular Genetics Unit, Chan-Zuckerberg BioHub, and the Marthella Foskett Brown Chair in Computational Biology to D.S.R, NSF grant (IOS-1354898) to C.W.R, and the Hibbitt Early Career Fellowship to C.B.A. Sequencing at the University of Chicago Functional Genomics Facility was partially supported by the NIH (5UL1TR002389-02 and UL1 TR000430).
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  • 26
    Publication Date: 2022-08-19
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Yuan, D., Yin, X., Li, X., Corvianawatie, C., Wang, Z., Li, Y., Yang, Y., Hu, X., Wang, J., Tan, S., Surinati, D., Purwandana, A., Wardana, A., Ismail, M., Budiman, A., Bayhaqi, A., Avianto, P., Santoso, P., Kusmanto, E., Dirhamsyah, Arifin, Z., & Pratt, L. A Maluku Sea intermediate western boundary current connecting Pacific Ocean circulation to the Indonesian Throughflow. Nature Communications, 13(1), (2022): 2093, https://doi.org/10.1038/s41467-022-29617-6.
    Description: The Indonesian Throughflow plays an important role in the global ocean circulation and climate. Existing studies of the Indonesian Throughflow have focused on the Makassar Strait and the exit straits, where the upper thermocline currents carry North Pacific waters to the Indian Ocean. Here we show, using mooring observations, that a previous unknown intermediate western boundary current (with the core at ~1000 m depth) exists in the Maluku Sea, which transports intermediate waters (primarily the Antarctic Intermediate Water) from the Pacific into the Seram-Banda Seas through the Lifamatola Passage above the bottom overflow. Our results suggest the importance of the western boundary current in global ocean intermediate circulation and overturn. We anticipate that our study is the beginning of more extensive investigations of the intermediate circulation of the Indo-Pacific ocean in global overturn, which shall improve our understanding of ocean heat and CO2 storages significantly.
    Description: This study is supported by NSFC (D.Y., Z.W., Y.L., Y.Y., S.T., J.W., and X.L.: 41720104008; D.Y., J.W., Y.L., X.L., Y.Y., S.T., X.H., and X.Y.: 91858204), the National Key Research and Development Program of China (D.Y. and X.L.: 2020YFA0608800), CAS (D.Y., Z.W., J.W., and Y.L.: XDB42000000), projects. Affiliations 1 and 2 share the first position. D.Y. is supported by QMSNL (2018SDKJ0104-02), and Shandong Provincial (U1606402) and the “Kunpeng Outstanding Scholar Program” of the FIO/NMR of China, J.W. supported by NSFC (41776011), Z.W. by NSFC (41876025).
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  • 27
    Publication Date: 2022-08-25
    Description: Author Posting. © American Meteorological Society , 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Han, L., Seim, H., Bane, J., Todd, R. E., & Muglia, M. A shelf water cascading event near Cape Hatteras. Journal of Physical Oceanography, 51(6), (2021): 2021–2033, https://doi.org/10.1175/JPO-D-20-0156.1.
    Description: Carbon-rich Middle Atlantic Bight (MAB) and South Atlantic Bight (SAB) shelf waters typically converge on the continental shelf near Cape Hatteras. Both are often exported to the adjacent open ocean in this region. During a survey of the region in mid-January 2018, there was no sign of shelf water export at the surface. Instead, a subsurface layer of shelf water with high chlorophyll and dissolved oxygen was observed at the edge of the Gulf Stream east of Cape Hatteras. Strong cooling over the MAB and SAB shelves in early January led to shelf waters being denser than offshore surface waters. Driven by the density gradient, the denser shelf waters cascaded beneath the Gulf Stream and were subsequently entrained into the Gulf Stream, as they were advected northeastward. Underwater glider observations 80 km downstream of the export location captured 0.44 Sv (1 Sv ≡ 106 m3 s−1) of shelf waters transported along the edge of the Gulf Stream in January 2018. In total, as much as 7 × 106 kg of carbon was exported from the continental shelf to a greater depth in the open ocean during this 5-day-long cascading event. Earlier observations of near-bottom temperature and salinity at a depth of 230 m captured several multiday episodes of shelf water at a location that was otherwise dominated by Gulf Stream water, indicating that the January 2018 cascading event was not unique. Cascading is an important, yet little-studied pathway of carbon export and sequestration at Cape Hatteras.
    Description: This research was funded by the National Science Foundation (Grants OCE-1558920 to University of North Carolina at Chapel Hill and OCE-1558521 to Woods Hole Oceanographic Institution) as part of PEACH. We acknowledge and thank Sara Haines for the processing and QC of the mooring data, and we thank the PEACH group for helpful discussions and for their support. Additional thanks are given to the crew of R/V Armstrong (AR-26).
    Keywords: Continental shelf/slope ; Fronts ; In situ oceanic observations
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  • 28
    Publication Date: 2022-06-29
    Description: The possibility that Arctic sea ice loss weakens mid-latitude westerlies, promoting more severe cold winters, has sparked more than a decade of scientific debate, with apparent support from observations but inconclusive modelling evidence. Here we show that sixteen models contributing to the Polar Amplification Model Intercomparison Project simulate a weakening of mid-latitude westerlies in response to projected Arctic sea ice loss. We develop an emergent constraint based on eddy feedback, which is 1.2 to 3 times too weak in the models, suggesting that the real-world weakening lies towards the higher end of the model simulations. Still, the modelled response to Arctic sea ice loss is weak: the North Atlantic Oscillation response is similar in magnitude and offsets the projected response to increased greenhouse gases, but would only account for around 10% of variations in individual years. We further find that relationships between Arctic sea ice and atmospheric circulation have weakened recently in observations and are no longer inconsistent with those in models.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed , info:eu-repo/semantics/article
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  • 29
    Publication Date: 2022-07-13
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(2), (2022): 271–282. https://doi.org/10.1175/jtech-d-21-0069.1.
    Description: The inception of a moored buoy network in the northern Indian Ocean in 1997 paved the way for systematic collection of long-term time series observations of meteorological and oceanographic parameters. This buoy network was revamped in 2011 with Ocean Moored buoy Network for north Indian Ocean (OMNI) buoys fitted with additional sensors to better quantify the air–sea fluxes. An intercomparison of OMNI buoy measurements with the nearby Woods Hole Oceanographic Institution (WHOI) mooring during the year 2015 revealed an overestimation of downwelling longwave radiation (LWR↓). Analysis of the OMNI and WHOI radiation sensors at a test station at National Institute of Ocean Technology (NIOT) during 2019 revealed that the accurate and stable amplification of the thermopile voltage records along with the customized datalogger in the WHOI system results in better estimations of LWR↓. The offset in NIOT measured LWR↓ is estimated first by segregating the LWR↓ during clear-sky conditions identified using the downwelling shortwave radiation measurements from the same test station, and second, finding the offset by taking the difference with expected theoretical clear-sky LWR↓. The corrected LWR↓ exhibited good agreement with that of collocated WHOI measurements, with a correlation of 0.93. This method is applied to the OMNI field measurements and again compared with the nearby WHOI mooring measurements, exhibiting a better correlation of 0.95. This work has led to the revamping of radiation measurements in OMNI buoys and provides a reliable method to correct past measurements and improve estimation of air–sea fluxes in the Indian Ocean.
    Description: KJJ and RV thank Ministry of Earth Sciences (MoES), Government of India, Secretary, MoES, and Director, NIOT, for the support and encouragement in carrying out the work under the National Monsoon Mission, Ocean Mixing and Monsoon (OMM) program. AT, JTF, and RAW thank Office of Naval Research Grants N00014-19-12410 and N00014-17-12880, United States, for funding and support. The OOS team at NIOT is acknowledged for their efforts in maintaining the OMNI buoy network in North Indian Ocean. We acknowledge Dr. B.W. Blomquist, University of Colorado, for his support in computing clear-sky radiation and Iury T. Simoes-Sousa, University of Massachusetts, Dartmouth, for the graphics. NCMRWF, MoES, Government of India, is acknowledged for NGFS reanalysis dataset, which is produced under the collaboration between NCMRWF, IITM, and IMD.
    Keywords: Algorithms ; Buoy observations ; In situ oceanic observations ; Instrumentation/sensors ; Quality assurance/control
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  • 30
    Publication Date: 2022-09-14
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 35(2), (2022): 851–875, https://doi.org/10.1175/JCLI-D-20-0603.1.
    Description: The Earth system is accumulating energy due to human-induced activities. More than 90% of this energy has been stored in the ocean as heat since 1970, with ∼60% of that in the upper 700 m. Differences in upper-ocean heat content anomaly (OHCA) estimates, however, exist. Here, we use a dataset protocol for 1970–2008—with six instrumental bias adjustments applied to expendable bathythermograph (XBT) data, and mapped by six research groups—to evaluate the spatiotemporal spread in upper OHCA estimates arising from two choices: 1) those arising from instrumental bias adjustments and 2) those arising from mathematical (i.e., mapping) techniques to interpolate and extrapolate data in space and time. We also examined the effect of a common ocean mask, which reveals that exclusion of shallow seas can reduce global OHCA estimates up to 13%. Spread due to mapping method is largest in the Indian Ocean and in the eddy-rich and frontal regions of all basins. Spread due to XBT bias adjustment is largest in the Pacific Ocean within 30°N–30°S. In both mapping and XBT cases, spread is higher for 1990–2004. Statistically different trends among mapping methods are found not only in the poorly observed Southern Ocean but also in the well-observed northwest Atlantic. Our results cannot determine the best mapping or bias adjustment schemes, but they identify where important sensitivities exist, and thus where further understanding will help to refine OHCA estimates. These results highlight the need for further coordinated OHCA studies to evaluate the performance of existing mapping methods along with comprehensive assessment of uncertainty estimates.
    Description: AS is supported by a Tasmanian Graduate Research Scholarship, a CSIRO-UTAS Quantitative Marine Science top-up, and by the Australian Research Council (ARC) (CE170100023; DP160103130). CMD was partially supported by ARC (FT130101532) and the Natural Environmental Research Council (NE/P019293/1). RC was supported through funding from the Earth Systems and Climate Change Hub of the Australian Government’s National Environmental Science Program. TB is supported by the Climate Observation and Monitoring Program, National Oceanic and Atmosphere Administration, U.S. Department of commerce. GCJ and JML are supported by NOAA Research and the NOAA Ocean Climate Observation Program. This is PMEL contribution number 5065. JAC is supported by the Centre for Southern Hemisphere Oceans Research (CSHOR), jointly funded by the Qingdao National Laboratory for Marine Science and Technology (QNLM, China) and the Commonwealth Scientific and Industrial Research Organization (CSIRO, Australia) and Australian Research Council’s Discovery Project funding scheme (project DP190101173). The research was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004). Data used in this study are available on request.
    Keywords: Bias ; Interpolation schemes ; In situ oceanic observations ; Uncertainty ; Oceanic variability ; Trends
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  • 31
    Publication Date: 2022-09-15
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(2), (2022): 223–235, https://doi.org/10.1175/JTECH-D-21-0110.1.
    Description: Previous work with simulations of oceanographic high-frequency (HF) radars has identified possible improvements when using maximum likelihood estimation (MLE) for direction of arrival; however, methods for determining the number of emitters (here defined as spatially distinct patches of the ocean surface) have not realized these improvements. Here we describe and evaluate the use of the likelihood ratio (LR) for emitter detection, demonstrating its application to oceanographic HF radar data. The combined detection–estimation methods MLE-LR are compared with multiple signal classification method (MUSIC) and MUSIC parameters for SeaSonde HF radars, along with a method developed for 8-channel systems known as MUSIC-Highest. Results show that the use of MLE-LR produces similar accuracy, in terms of the RMS difference and correlation coefficients squared, as previous methods. We demonstrate that improved accuracy can be obtained for both methods, at the cost of fewer velocity observations and decreased spatial coverage. For SeaSondes, accuracy improvements are obtained with less commonly used parameter sets. The MLE-LR is shown to be able to resolve simultaneous closely spaced emitters, which has the potential to improve observations obtained by HF radars operating in complex current environments.
    Description: This work was supported by the National Science Foundation (NSF) under Grant OCE-1658475. Computing resources were provided by the UCSB Center for Scientific Computing through an NSF MRSEC (DMR-1720256) and NSF CNS-1725797.
    Keywords: Ocean ; Algorithms ; Data quality control ; Radars/radar observations ; Remote sensing ; Surface observations ; Quality assurance/control
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  • 32
    Publication Date: 2022-09-15
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(1),(2022): 75–97, https://doi.org/10.1175/JPO-D-21-0099.1.
    Description: Mesoscale eddies contain the bulk of the ocean’s kinetic energy (KE), but fundamental questions remain on the cross-scale KE transfers linking eddy generation and dissipation. The role of submesoscale flows represents the key point of discussion, with contrasting views of submesoscales as either a source or a sink of mesoscale KE. Here, the first observational assessment of the annual cycle of the KE transfer between mesoscale and submesoscale motions is performed in the upper layers of a typical open-ocean region. Although these diagnostics have marginal statistical significance and should be regarded cautiously, they are physically plausible and can provide a valuable benchmark for model evaluation. The cross-scale KE transfer exhibits two distinct stages, whereby submesoscales energize mesoscales in winter and drain mesoscales in spring. Despite this seasonal reversal, an inverse KE cascade operates throughout the year across much of the mesoscale range. Our results are not incompatible with recent modeling investigations that place the headwaters of the inverse KE cascade at the submesoscale, and that rationalize the seasonality of mesoscale KE as an inverse cascade-mediated response to the generation of submesoscales in winter. However, our findings may challenge those investigations by suggesting that, in spring, a downscale KE transfer could dampen the inverse KE cascade. An exploratory appraisal of the dynamics governing mesoscale–submesoscale KE exchanges suggests that the upscale KE transfer in winter is underpinned by mixed layer baroclinic instabilities, and that the downscale KE transfer in spring is associated with frontogenesis. Current submesoscale-permitting ocean models may substantially understate this downscale KE transfer, due to the models’ muted representation of frontogenesis.
    Description: The OSMOSIS experiment was funded by the U.K. Natural Environment Research Council (NERC) through Grants NE/1019999/1 and NE/101993X/1. ACNG acknowledges the support of the Royal Society and the Wolfson Foundation, and XY that of a China Scholarship Council PhD studentship.
    Keywords: Ageostrophic circulations ; Dynamics ; Eddies ; Energy transport ; Frontogenesis/frontolysis ; Instability ; Mesoscale processes ; Nonlinear dynamics ; Ocean circulation ; Ocean dynamics ; Small scale processes ; Turbulence
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  • 33
    Publication Date: 2022-09-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1677-1691, https://doi.org/10.1175/jpo-d-21-0269.1.
    Description: Oceanic mesoscale motions including eddies, meanders, fronts, and filaments comprise a dominant fraction of oceanic kinetic energy and contribute to the redistribution of tracers in the ocean such as heat, salt, and nutrients. This reservoir of mesoscale energy is regulated by the conversion of potential energy and transfers of kinetic energy across spatial scales. Whether and under what circumstances mesoscale turbulence precipitates forward or inverse cascades, and the rates of these cascades, remain difficult to directly observe and quantify despite their impacts on physical and biological processes. Here we use global observations to investigate the seasonality of surface kinetic energy and upper-ocean potential energy. We apply spatial filters to along-track satellite measurements of sea surface height to diagnose surface eddy kinetic energy across 60–300-km scales. A geographic and scale-dependent seasonal cycle appears throughout much of the midlatitudes, with eddy kinetic energy at scales less than 60 km peaking 1–4 months before that at 60–300-km scales. Spatial patterns in this lag align with geographic regions where an Argo-derived estimate of the conversion of potential to kinetic energy is seasonally varying. In midlatitudes, the conversion rate peaks 0–2 months prior to kinetic energy at scales less than 60 km. The consistent geographic patterns between the seasonality of potential energy conversion and kinetic energy across spatial scale provide observational evidence for the inverse cascade and demonstrate that some component of it is seasonally modulated. Implications for mesoscale parameterizations and numerical modeling are discussed.
    Description: This work was generously funded by NSF Grants OCE-1912302, OCE-1912125 (Drushka), and OCE-1912325 (Abernathey) as part of the Ocean Energy and Eddy Transport Climate Process Team.
    Keywords: Eddies ; Energy transport ; Mesoscale processes ; Turbulence ; Oceanic mixed layer ; Altimetry ; Seasonal cycle
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  • 34
    Publication Date: 2022-09-23
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(1), (2022): 31–35, https://doi.org/10.1175/JTECH-D-21-0075.1.
    Description: Acoustic Doppler current profilers (ADCP) do not provide reliable water velocity measurements near the sea surface or bottom because acoustic sidelobe reflections from the boundary contaminate the Doppler velocity measurements. The apparent depth of the center of the sidelobe reflection is zsl = ha[1 − cos(θ)], where ha is the distance from the ADCP acoustic head to the sea surface and θ is the ADCP beam angle. However, sidelobe contamination extends one and a half ADCP bins below zsl as the range gating of the acoustic return causes overlap between adjacent ADCP bins. Consequently, the contaminated region z 〈 zsl + 3Δz/2 is deeper than traditionally suggested, with a dependence on bin size Δz. Direct observations confirming both the center depth of the sidelobe reflection and the depth of contamination are presented for six bottom-mounted, upward-looking ADCPs. The sidelobe reflection is isolated by considering periods of weak wind stresses when the sea surface is smooth and there is nearly perfect reflection of the main beams away from the ADCP and hence little acoustic return from the main beams to the ADCP.
    Description: This analysis was supported by NSF OCE 1558874 for Kirincich and Lentz. Plueddemann was supported by the Global Ocean Monitoring and Observing Program of the National Oceanic and Atmospheric Administration (CPO Fund Reference Number 100007298), through the Cooperative Institute for the North Atlantic Region (CINAR) under Cooperative Agreement NA14OAR4320158.
    Keywords: Acoustic measurements/effects ; Data processing/distribution ; Profilers ; oceanic
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  • 35
    Publication Date: 2022-09-23
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Pattanayak, R., Underwood, R., Crowley, M. R., Crossman, D. K., Morgan, J. R., & Yacoubian, T. A. Deletion in chromosome 6 spanning alpha-synuclein and multimerin1 loci in the Rab27a/b double knockout mouse. Scientific Reports, 12(1), (2022): 9837, https://doi.org/10.1038/s41598-022-13557-8.
    Description: We report an incidental 358.5 kb deletion spanning the region encoding for alpha-synuclein (αsyn) and multimerin1 (Mmrn1) in the Rab27a/Rab27b double knockout (DKO) mouse line previously developed by Tolmachova and colleagues in 2007. Western blot and RT-PCR studies revealed lack of αsyn expression at either the mRNA or protein level in Rab27a/b DKO mice. PCR of genomic DNA from Rab27a/b DKO mice demonstrated at least partial deletion of the Snca locus using primers targeted to exon 4 and exon 6. Most genes located in proximity to the Snca locus, including Atoh1, Atoh2, Gm5570, Gm4410, Gm43894, and Grid2, were shown not to be deleted by PCR except for Mmrn1. Using whole genomic sequencing, the complete deletion was mapped to chromosome 6 (60,678,870–61,037,354), a slightly smaller deletion region than that previously reported in the C57BL/6J substrain maintained by Envigo. Electron microscopy of cortex from these mice demonstrates abnormally enlarged synaptic terminals with reduced synaptic vesicle density, suggesting potential interplay between Rab27 isoforms and αsyn, which are all highly expressed at the synaptic terminal. Given this deletion involving several genes, the Rab27a/b DKO mouse line should be used with caution or with appropriate back-crossing to other C57BL/6J mouse substrain lines without this deletion.
    Description: This study was supported by NIH [R56NS115767 (TAY), RF1NS115767-01A1 (TAY), P50NS108675 (TAY), and NINDS/NIA RF1NS078165 (JRM)].
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  • 36
    Publication Date: 2022-06-06
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(10), (2021): 3235–3252, https://doi.org/10.1175/JPO-D-20-0288.1.
    Description: Recent mooring measurements from the Overturning in the Subpolar North Atlantic Program have revealed abundant cyclonic eddies at both sides of Cape Farewell, the southern tip of Greenland. In this study, we present further observational evidence, from both Eulerian and Lagrangian perspectives, of deep cyclonic eddies with intense rotation (ζ/f 〉 1) around southern Greenland and into the Labrador Sea. Most of the observed cyclones exhibit strongest rotation below the surface at 700–1000 dbar, where maximum azimuthal velocities are ~30 cm s−1 at radii of ~10 km, with rotational periods of 2–3 days. The cyclonic rotation can extend to the deep overflow water layer (below 1800 dbar), albeit with weaker azimuthal velocities (~10 cm s−1) and longer rotational periods of about one week. Within the middepth rotation cores, the cyclones are in near solid-body rotation and have the potential to trap and transport water. The first high-resolution hydrographic transect across such a cyclone indicates that it is characterized by a local (both vertically and horizontally) potential vorticity maximum in its middepth core and cold, fresh anomalies in the deep overflow water layer, suggesting its source as the Denmark Strait outflow. Additionally, the propagation and evolution of the cyclonic eddies are illustrated with deep Lagrangian floats, including their detachments from the boundary currents to the basin interior. Taken together, the combined Eulerian and Lagrangian observations have provided new insights on the boundary current variability and boundary–interior exchange over a geographically large scale near southern Greenland, calling for further investigations on the (sub)mesoscale dynamics in the region.
    Description: OOI mooring data are based upon work supported by the National Science Foundation under Cooperative Agreement 1743430. S. Zou, A. Bower, and H. Furey gratefully acknowledge the support from the Physical Oceanography Program of the U.S. National Science Foundation Grant OCE-1756361. R.S. Pickart acknowledges support from National Science Foundation Grants OCE-1259618 and OCE-1756361. N. P. Holliday and L. Houpert were supported by NERC programs U.K. OSNAP (NE/K010875) and U.K. OSNAP-Decade (NE/T00858X/1).
    Keywords: North Atlantic Ocean ; Cyclogenesis/cyclolysis ; Lagrangian circulation/transport ; Mesoscale processes ; Ocean circulation
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  • 37
    Publication Date: 2022-06-06
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Applied Meteorology and Climatology 60(9), (2021): 1361–1370, https://doi.org/10.1175/JAMC-D-20-0254.1.
    Description: We analyze how winter thaw events (TE; T 〉 0°C) are changing on the summit of Mount Washington, New Hampshire, using three metrics: the number of TE, number of thaw hours, and number of thaw degree-hours for temperature and dewpoint for winters from 1935/36 to 2019/20. The impact of temperature-only TE and dewpoint TE on snow depth are compared to quantify the different impacts of sensible-only heating and sensible-and-latent heating, respectively. Results reveal that temperature and dewpoint TE for all metrics increased at a statistically significant rate (p 〈 0.05) over the full time periods studied for temperature (1935/36–2019/20) and dewpoint (1939/40–2019/20). Notably, around 2000/01, the positive trends increased for most variables, including dewpoint-thaw degree-hours that increased by 82.11 degree-hours decade−1 during 2000–20, which is approximately 5 times as faster as the 1939–2020 rate of 17.70 degree-hours decade−1. Furthermore, a clear upward shift occurred around 1990 in the lowest winter values of thaw hours and thaw degree-hours—winters now have a higher baseline amount of thaw than before 1990. Snow-depth loss during dewpoint TE (0.36 cm h−1) occurred more than 2 times as fast as temperature-only TE (0.14 cm h−1). With winters projected to warm throughout the twenty-first century in the northeastern United States, it is expected that the trends in winter thaw events, and the sensible and latent energy that they bring, will continue to rise and lead to more frequent winter flooding, fewer days of good quality snow for winter recreation, and changes in ecosystem function.
    Keywords: Atmosphere ; Snowmelt/icemelt ; Snowpack ; Winter/cool season ; Climate change ; Humidity ; Latent heating/cooling ; Snow cover ; Temperature
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  • 38
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    American Meteorological Society
    Publication Date: 2022-06-06
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(12),(2021): 3651–3662, https://doi.org/10.1175/JPO-D-21-0076.1.
    Description: Ocean striations are composed of alternating quasi-zonal band-like flows; this kind of organized structure of currents can be found in all the world’s oceans and seas. Previous studies have mainly been focused on the mechanisms of their generation and propagation. This study uses the spatial high-pass filtering to obtain the three-dimensional structure of ocean striations in the North Pacific in both the z coordinate and σ coordinate based on 10-yr averaged Simple Ocean Data Assimilation version 3 (SODA3) data. First, we identify an ideal-fluid potential density domain where the striations are undisturbed by the surface forcing and boundary effects. Second, using the isopycnal layer analysis, we show that on isopycnal surfaces the orientations of striations nearly follow the potential vorticity (PV) contours, while in the meridional–vertical plane the central positions of striations are generally aligned with the latitude of zero gradient of the relative PV. Our analysis provides a simple dynamical interpretation and better understanding for the role of ocean striations.
    Description: This work is supported by the National Natural Science Foundation of China (42076025, 41676021), the Key Special Project for introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0306), the National Basic Research Program (973 Program) of China (2013CB956201). The numerical simulation is supported by the High Performance Computing Division in the South China Sea Institute of Oceanography. The authors thank Tingjin Guan for the help in enhancing drawing quality.
    Keywords: Currents ; Jets ; Mesoscale processes ; Potential vorticity ; Isopycnal coordinates
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  • 39
    Publication Date: 2022-06-06
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Liang, Y.-C., Frankignoul, C., Kwon, Y.-O., Gastineau, G., Manzini, E., Danabasoglu, G., Suo, L., Yeager, S., Gao, Y., Attema, J. J., Cherchi, A., Ghosh, R., Matei, D., Mecking, J., Tian, T., & Zhang, Y. Impacts of Arctic sea ice on cold season atmospheric variability and trends estimated from observations and a multimodel large ensemble. Journal of Climate, 34(20), (2021): 8419–8443, https://doi.org/10.1175/JCLI-D-20-0578.s1.
    Description: To examine the atmospheric responses to Arctic sea ice variability in the Northern Hemisphere cold season (from October to the following March), this study uses a coordinated set of large-ensemble experiments of nine atmospheric general circulation models (AGCMs) forced with observed daily varying sea ice, sea surface temperature, and radiative forcings prescribed during the 1979–2014 period, together with a parallel set of experiments where Arctic sea ice is substituted by its climatology. The simulations of the former set reproduce the near-surface temperature trends in reanalysis data, with similar amplitude, and their multimodel ensemble mean (MMEM) shows decreasing sea level pressure over much of the polar cap and Eurasia in boreal autumn. The MMEM difference between the two experiments allows isolating the effects of Arctic sea ice loss, which explain a large portion of the Arctic warming trends in the lower troposphere and drive a small but statistically significant weakening of the wintertime Arctic Oscillation. The observed interannual covariability between sea ice extent in the Barents–Kara Seas and lagged atmospheric circulation is distinguished from the effects of confounding factors based on multiple regression, and quantitatively compared to the covariability in MMEMs. The interannual sea ice decline followed by a negative North Atlantic Oscillation–like anomaly found in observations is also seen in the MMEM differences, with consistent spatial structure but much smaller amplitude. This result suggests that the sea ice impacts on trends and interannual atmospheric variability simulated by AGCMs could be underestimated, but caution is needed because internal atmospheric variability may have affected the observed relationship.
    Description: We acknowledge support by the Blue-Action Project (the European Union’s Horizon 2020 research and innovation programme, #727852, http://www.blue-action.eu/index.php?id=3498). The WHOI–NCAR group was supported by the U.S. National Science Foundation (NSF) Office of Polar Programs Grants 1736738 and 1737377. Their computing and data storage resources, including the Cheyenne supercomputer (doi:10.5065/D6RX99HX), were provided by the Computational and Information Systems Laboratory at NCAR. NCAR is a major facility sponsored by the U.S. NSF under Cooperative Agreement No. 1852977. Guillaume Gastineau was granted access to the HPC resources of TGCC under the allocations A5-017403 and A7-017403 made by GENCI. The SST and SIC data were downloaded from the U.K. Met Office Hadley Centre Observations Datasets (http://www.metoffice.gov.uk/hadobs/hadisst). The work by NLeSC was carried out on the Dutch national e-infrastructure with the support of SURF Cooperative. The simulations of IAP AGCM were supported by the National Key R&D Program of China 2017YFE0111800. The NorESM2-CAM6 simulations were performed on resources provided by UNINETT Sigma2–the National Infrastructure for High Performance Computing and Data Storage in Norway (nn2343k, NS9015K).
    Keywords: Arctic ; Sea ice ; Atmospheric circulation ; Climate models
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  • 40
    Publication Date: 2022-06-10
    Description: Author Posting. © American Meteorological Society , 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Zambon, J. B., He, R., Warner, J. C., & Hegermiller, C. A. Impact of SST and surface waves on Hurricane Florence (2018): a coupled modeling investigation. Weather and Forecasting, 36(5), (2021): 1713–1734, https://doi.org/10.1175/WAF-D-20-0171.1.
    Description: Hurricane Florence (2018) devastated the coastal communities of the Carolinas through heavy rainfall that resulted in massive flooding. Florence was characterized by an abrupt reduction in intensity (Saffir–Simpson category 4 to category 1) just prior to landfall and synoptic-scale interactions that stalled the storm over the Carolinas for several days. We conducted a series of numerical modeling experiments in coupled and uncoupled configurations to examine the impact of sea surface temperature (SST) and ocean waves on storm characteristics. In addition to experiments using a fully coupled atmosphere–ocean–wave model, we introduced the capability of the atmospheric model to modulate wind stress and surface fluxes by ocean waves through data from an uncoupled wave model. We examined these experiments by comparing track, intensity, strength, SST, storm structure, wave height, surface roughness, heat fluxes, and precipitation in order to determine the impacts of resolving ocean conditions with varying degrees of coupling. We found differences in the storm’s intensity and strength, with the best correlation coefficient of intensity (r = 0.89) and strength (r = 0.95) coming from the fully coupled simulations. Further analysis into surface roughness parameterizations added to the atmospheric model revealed differences in the spatial distribution and magnitude of the largest roughness lengths. Adding ocean and wave features to the model further modified the fluxes due to more realistic cooling beneath the storm, which in turn modified the precipitation field. Our experiments highlight significant differences in how air–sea processes impact hurricane modeling. The storm characteristics of track, intensity, strength, and precipitation at landfall are crucial to predictability and forecasting of future landfalling hurricanes.
    Description: This work has been supported by the U.S. Geological Survey Coastal/Marine Hazards and Resources Program, and by Congressional appropriations through the Additional Supplemental Appropriations for Disaster Relief Act of 2019 (H.R. 2157). The authors also wish to acknowledge research support through NSF Grant OCE-1559178 and NOAA Grant NA16NOS0120028. We also wish to thank Chris Sherwood from the U.S. Geological Survey for his help in deriving wave length from WAVEWATCH III data.
    Keywords: Hurricanes/typhoons ; Hindcasts ; Numerical weather prediction/forecasting ; Coupled models ; Ocean models
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  • 41
    Publication Date: 2022-06-10
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 38(9), (2021): 1535–1550, https://doi.org/10.1175/JTECH-D-20-0176.s1.
    Description: Monitoring the heat content variability of glacial fjords is crucial to understanding the effects of oceanic forcing on marine-terminating glaciers. A pressure-sensor-equipped inverted echo sounder (PIES) was deployed midfjord in Sermilik Fjord in southeast Greenland from August 2011 to September 2012 alongside a moored array of instruments recording temperature, conductivity, and velocity. Historical hydrography is used to quantify the relationship between acoustic travel time and the vertically averaged heat content, and a new method is developed for filtering acoustic return echoes in an ice-influenced environment. We show that PIES measurements, combined with a knowledge of the fjord’s two-layer density structure, can be used to reconstruct the thickness and temperature of the inflowing water. Additionally, we find that fjord–shelf exchange events are identifiable in the travel time record implying the PIES can be used to monitor fjord circulation. Finally, we show that PIES data can be combined with moored temperature records to derive the heat content of the upper layer of the fjord where moored instruments are at great risk of being damaged by transiting icebergs.
    Description: FS and MA acknowledge funding from the Kerr Family Foundation and the Grossman Family Foundation through the Woods Hole Oceanographic Institution. MA is supported by a grant from the National Science Foundation Office of Polar Programs (1332911). FS and RS acknowledge support from NSF OCE-1657601 and from the Heising-Simons Foundation.
    Keywords: Glaciers ; Ice sheets ; Acoustic measurements/effects ; In situ oceanic observations
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  • 42
    Publication Date: 2022-06-10
    Description: Author Posting. © American Meteorological Society , 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Zippel, S. F., Farrar, J. T., Zappa, C. J., Miller, U., St Laurent, L., Ijichi, T., Weller, R. A., McRaven, L., Nylund, S., & Le Bel, D. Moored turbulence measurements using pulse-coherent doppler sonar. Journal of Atmospheric and Oceanic Technology, 38(9), (2021): 1621–1639, https://doi.org/10.1175/JTECH-D-21-0005.1.
    Description: Upper-ocean turbulence is central to the exchanges of heat, momentum, and gases across the air–sea interface and therefore plays a large role in weather and climate. Current understanding of upper-ocean mixing is lacking, often leading models to misrepresent mixed layer depths and sea surface temperature. In part, progress has been limited by the difficulty of measuring turbulence from fixed moorings that can simultaneously measure surface fluxes and upper-ocean stratification over long time periods. Here we introduce a direct wavenumber method for measuring turbulent kinetic energy (TKE) dissipation rates ϵ from long-enduring moorings using pulse-coherent ADCPs. We discuss optimal programming of the ADCPs, a robust mechanical design for use on a mooring to maximize data return, and data processing techniques including phase-ambiguity unwrapping, spectral analysis, and a correction for instrument response. The method was used in the Salinity Processes Upper-Ocean Regional Study (SPURS) to collect two year-long datasets. We find that the mooring-derived TKE dissipation rates compare favorably to estimates made nearby from a microstructure shear probe mounted to a glider during its two separate 2-week missions for O(10−8) ≤ ϵ ≤ O(10−5) m2 s−3. Periods of disagreement between turbulence estimates from the two platforms coincide with differences in vertical temperature profiles, which may indicate that barrier layers can substantially modulate upper-ocean turbulence over horizontal scales of 1–10 km. We also find that dissipation estimates from two different moorings at 12.5 and at 7 m are in agreement with the surface buoyancy flux during periods of strong nighttime convection, consistent with classic boundary layer theory.
    Description: This work was funded by NASA as part of the Salinity Processes in the Upper Ocean Regional Study (SPURS), supporting field work for SPURS-1 (NASA Grant NNX11AE84G), for SPURS-2 (NASA Grant NNX15AG20G), and for analysis (NASA Grant 80NSSC18K1494). Funding for early iterations of this project associated with the VOCALS project and Stratus 9 mooring was provided by NSF (Awards 0745508 and 0745442). Additional funding was provided by ONR Grant N000141812431 and NSF Award 1756839. The Stratus Ocean Reference Station is funded by the Global Ocean Monitoring and Observing Program of the National Oceanic and Atmospheric Administration (CPO FundRef Number 100007298), through the Cooperative Institute for the North Atlantic Region (CINAR) under Cooperative Agreement NA14OAR4320158. Microstructure measurements made from the glider were supported by NSF (Award 1129646).
    Keywords: Ocean ; Turbulence ; Atmosphere-ocean interaction ; Boundary layer ; Oceanic mixed layer ; In situ oceanic observations
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  • 43
    Publication Date: 2022-06-17
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 34(22), (2021): 9093–9113, https://doi.org/10.1175/JCLI-D-21-0142.1.
    Description: This study examines the role of the relative wind (RW) effect (wind relative to ocean current) in the regional ocean circulation and extratropical storm track in the south Indian Ocean. Comparison of two high-resolution regional coupled model simulations with and without the RW effect reveals that the most conspicuous ocean circulation response is the significant weakening of the overly energetic anticyclonic standing eddy off Port Elizabeth, South Africa, a biased feature ascribed to upstream retroflection of the Agulhas Current (AC). This opens a pathway through which the AC transports the warm and salty water mass from the subtropics, yielding marked increases in sea surface temperature (SST), upward turbulent heat flux (THF), and meridional SST gradient in the Agulhas retroflection region. These thermodynamic and dynamic changes are accompanied by the robust strengthening of the local low-tropospheric baroclinicity and the baroclinic wave activity in the atmosphere. Examination of the composite life cycle of synoptic-scale storms subjected to the high-THF events indicates a robust strengthening of the extratropical storms far downstream. Energetics calculations for the atmosphere suggest that the baroclinic energy conversion from the basic flow is the chief source of increased eddy available potential energy, which is subsequently converted to eddy kinetic energy, providing for the growth of transient baroclinic waves. Overall, the results suggest that the mechanical and thermal air–sea interactions are inherently and inextricably linked together to substantially influence the extratropical storm tracks in the south Indian Ocean.
    Description: Seo acknowledges the support from the NSF (OCE-2022846), NOAA (NA19OAR4310376), ONR (N00014-17-12398), and the Andrew W. Mellon Foundation Endowed Fund for Innovative Research at Woods Hole Oceanographic Institution (WHOI). Song is supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (NRF-2019R1C1C1003663). O’Neill was supported by the NASA Grants 80NSSC19K1117 and 80NSSC19K1011.
    Keywords: Atmosphere-ocean interaction ; Extratropical cyclones ; Wind stress ; Boundary currents ; Storm tracks
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  • 44
    Publication Date: 2022-06-17
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(3), (2022): 363–382, https://doi.org/10.1175/jpo-d-21-0084.1.
    Description: Meltwater from Greenland is an important freshwater source for the North Atlantic Ocean, released into the ocean at the head of fjords in the form of runoff, submarine melt, and icebergs. The meltwater release gives rise to complex in-fjord transformations that result in its dilution through mixing with other water masses. The transformed waters, which contain the meltwater, are exported from the fjords as a new water mass Glacially Modified Water (GMW). Here we use summer hydrographic data collected from 2013 to 2019 in Upernavik, a major glacial fjord in northwest Greenland, to describe the water masses that flow into the fjord from the shelf and the exported GMWs. Using an optimum multi-parameter technique across multiple years we then show that GMW is composed of 57.8% ± 8.1% Atlantic Water (AW), 41.0% ± 8.3% Polar Water (PW), 1.0% ± 0.1% subglacial discharge, and 0.2% ± 0.2% submarine meltwater. We show that the GMW fractional composition cannot be described by buoyant plume theory alone since it includes lateral mixing within the upper layers of the fjord not accounted for by buoyant plume dynamics. Consistent with its composition, we find that changes in GMW properties reflect changes in the AW and PW source waters. Using the obtained dilution ratios, this study suggests that the exchange across the fjord mouth during summer is on the order of 50 mSv (1 Sv ≡ 106 m3 s−1) (compared to a freshwater input of 0.5 mSv). This study provides a first-order parameterization for the exchange at the mouth of glacial fjords for large-scale ocean models.
    Description: This work was partially supported by the Centre for Climate Dynamics (SKD) at the Bjerknes Centre for Climate Research. The authors thank NASA and the OMG consortium for making observational data freely available, and acknowledge M. Morlighem for good support in the early stages of this project. MM and LHS and would also like to thank Ø. Paasche, the ACER project, and the U.S. Norway Fulbright Foundation for the Norwegian Arctic Chair Grant 2019–20 that made the visit to Scripps Institution of Oceanography possible. FS acknowledges support from the DOE Office of Science Grant DE-SC0020073, Heising-Simons Foundation and from NSF and OCE-1756272. DAS acknowledges support from U.K. NERC Grants NE/P011365/1, NE/T011920/1, and NERC Independent Research Fellowship NE/T011920/1. MW was supported by an appointment to the NASA Postdoctoral Program at the Jet Propulsion Laboratory, California Institute of Technology, administered by the Universities Space Research Association under contract with NASA. CSA would like to acknowledge Geocenter Denmark for support to the project “Upernavik Glacier.”
    Keywords: Ocean ; Arctic ; Atlantic Ocean ; Glaciers ; Ice sheets ; Buoyancy ; Entrainment ; In situ oceanic observations ; Annual variations
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  • 45
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    American Meteorological Society
    Publication Date: 2022-06-03
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(9), (2021): 2721–2733, https://doi.org/10.1175/JPO-D-20-0298.1.
    Description: A linear numerical model of an island or a tall seamount is used to explore superinertial leaky resonances forced by ambient vertically and horizontally uniform current fluctuations. The model assumes a circularly symmetric topography (including a shallow reef) and allows realistic stratification and bottom friction. As long as there is substantial stratification, a number of leaky resonances are found, and when the island’s flanks are narrow relative to the internal Rossby radius, some of the near-resonant modes resemble leaky internal Kelvin waves. Other “resonances” resemble higher radial mode long gravity waves as explored by Chambers. The near-resonances amplify the cross-reef velocities that help fuel biological activity. Results for cases with the central island replaced by a lagoon do not differ greatly from the island case which has land at the center. As an aside, insight is provided on the question of offshore boundary conditions for superinertial nearly trapped waves along a straight coast.
    Keywords: Baroclinic flows ; Internal waves ; Kelvin waves
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  • 46
    Publication Date: 2022-06-03
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 34(22), (2021): 8971–8987, https://doi.org/10.1175/JCLI-D-20-0610.1.
    Description: The impact of increasing Greenland freshwater discharge on the subpolar North Atlantic (SPNA) remains unknown as there are uncertainties associated with the time scales of the Greenland freshwater anomaly (GFWA) in the SPNA. Results from numerical simulations tracking GFWA and an analytical approach are employed to estimate the response time, suggesting that a decadal time scale (13 years) is required for the SPNA to adjust for increasing GFWA. Analytical solutions obtained for a long-lasting increase of freshwater discharge show a non-steady-state response of the SPNA with increasing content of the GFWA. In contrast, solutions for a short-lived pulse of freshwater demonstrate different responses of the SPNA with a rapid increase of freshwater in the domain followed by an exponential decay after the pulse has passed. The derived theoretical relation between time scales shows that residence time scales are time dependent for a non-steady-state case and asymptote the response time scale with time. The residence time of the GFWA deduced from Lagrangian experiments is close to and smaller than the response time, in agreement with the theory. The Lagrangian analysis shows dependence of the residence time on the entrance route of the GFWA and on the depth. The fraction of the GFWA exported through Davis Strait has limited impact on the interior basins, whereas the fraction entering the SPNA from the southwest Greenland shelf spreads into the interior regions. In both cases, the residence time of the GFWA increases with depth demonstrating long persistence of the freshwater anomaly in the subsurface layers.
    Description: D. S. Dukhovskoy and E. P. Chassignet were funded by the DOE (Award DE-SC0014378) and HYCOM NOPP (Award N00014-19-1-2674). The HYCOM-CICE simulations were supported by a grant of computer time from the DoD High-Performance Computing Modernization Program at NRL SSC. G. Platov was funded by the RSF N19-17-00154. P. G. Myers was funded by an NSERC Discovery Grant (Grant RGPIN 04357). A. Proshutinsky was funded by FAMOS project (NSF Grant NSF 14-584).
    Keywords: North Atlantic Ocean ; Lagrangian circulation/transport ; Ocean circulation ; Differential equations ; Ocean models
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  • 47
    Publication Date: 2022-06-03
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(12),(2021): 3663–3678, https://doi.org/10.1175/JPO-D-21-0058.1.
    Description: The wind-driven exchange through complex ridges and islands between marginal seas and the open ocean is studied using both numerical and analytical models. The models are forced by a steady, spatially uniform northward wind stress intended to represent the large-scale, low-frequency wind patterns typical of the seasonal monsoons in the western Pacific Ocean. There is an eastward surface Ekman transport out of the marginal sea and westward geostrophic inflows into the marginal sea. The interaction between the Ekman transport and an island chain produces strong baroclinic flows along the island boundaries with a vertical depth that scales with the ratio of the inertial boundary layer thickness to the baroclinic deformation radius. The throughflows in the gaps are characterized by maximum transport in the center gap and decreasing transports toward the southern and northern tips of the island chain. An extended island rule theory demonstrates that throughflows are determined by the collective balance between viscosity on the meridional boundaries and the eastern side boundary of the islands. The outflowing transport is balanced primarily by a shallow current that enters the marginal sea along its equatorward boundary. The islands can block some direct exchange and result in a wind-driven overturning cell within the marginal sea, but this is compensated for by eastward zonal jets around the southern and northern tips of the island chain. Topography in the form of a deep slope, a ridge, or shallow shelves around the islands alters the current pathways but ultimately is unable to limit the total wind-driven exchange between the marginal sea and the open ocean.
    Description: This research is supported in part by the China Scholarship Council (201906330102). H. G. is financially supported by the China Scholarship Council to study at WHOI for 2 years as a guest student. M. A. S. is supported by the National Science Foundation Grant OCE-1922538.
    Keywords: Ekman pumping/transport ; Ocean circulation ; Topographic effects
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  • 48
    Publication Date: 2022-06-16
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 35(11), (2022): 3445-3457, https://doi.org/10.1175/jcli-d-21-0656.1.
    Description: Unlike greenhouse gases (GHGs), anthropogenic aerosol (AA) concentrations have increased and then decreased over the past century or so, with the timing of the peak concentration varying in different regions. To date, it has been challenging to separate the climate impact of AAs from that due to GHGs and background internal variability. We use a pattern recognition method, taking advantage of spatiotemporal covariance information, to isolate the forced patterns for the surface ocean and associated atmospheric variables from the all-but-one forcing Community Earth System Model ensembles. We find that the aerosol-forced responses are dominated by two leading modes, with one associated with the historical increase and future decrease of global mean aerosol concentrations (dominated by the Northern Hemisphere sources) and the other due to the transition of the primary sources of AA from the west to the east and also from Northern Hemisphere extratropical regions to tropical regions. In particular, the aerosol transition effect, to some extent compensating the global mean effect, exhibits a zonal asymmetry in the surface temperature and salinity responses. We also show that this transition effect dominates the total AA effect during recent decades, e.g., 1967–2007.
    Description: All three authors are supported by U.S. National Science Foundation (OCE-2048336). The Community Earth System Model project is supported primarily by the National Science Foundation (https://www.cesm.ucar.edu/projects/community-projects/LENS/data-sets.html and https://www.cesm.ucar.edu/working_groups/CVC/simulations/cesm1-single_forcing_le.html).
    Keywords: Aerosol radiative effect ; Climate Change ; Climate variability ; Sea surface temperature ; Salinity
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  • 49
    Publication Date: 2022-06-09
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 102(8), (2021): S143–S198, https://doi.org/10.1175/BAMS-D-21-0083.1.
    Description: This chapter details 2020 global patterns in select observed oceanic physical, chemical, and biological variables relative to long-term climatologies, their differences between 2020 and 2019, and puts 2020 observations in the context of the historical record. In this overview we address a few of the highlights, first in haiku, then paragraph form: La Niña arrives, shifts winds, rain, heat, salt, carbon: Pacific—beyond. Global ocean conditions in 2020 reflected a transition from an El Niño in 2018–19 to a La Niña in late 2020. Pacific trade winds strengthened in 2020 relative to 2019, driving anomalously westward Pacific equatorial surface currents. Sea surface temperatures (SSTs), upper ocean heat content, and sea surface height all fell in the eastern tropical Pacific and rose in the western tropical Pacific. Efflux of carbon dioxide from ocean to atmosphere was larger than average across much of the equatorial Pacific, and both chlorophyll-a and phytoplankton carbon concentrations were elevated across the tropical Pacific. Less rain fell and more water evaporated in the western equatorial Pacific, consonant with increased sea surface salinity (SSS) there. SSS may also have increased as a result of anomalously westward surface currents advecting salty water from the east. El Niño–Southern Oscillation conditions have global ramifications that reverberate throughout the report.
    Description: Argo data used in the chapter were collected and made freely available by the International Argo Program and the national programs that contribute to it. (https://argo.ucsd.edu, https://www.ocean-ops. org). The Argo Program is part of the Global Ocean Observing System. Many authors of the chapter are supported by NOAA Research, the NOAA Global Ocean Monitoring and Observing Program, or the NOAA Ocean Acidification Program. • L. Cheng is supported by National Natural Science Foundation of China (42076202) and Strategic Priority Research Program of the Chinese Academy of Sciences (XDB42040402. • R. E. Killick is supported by the Met Office Hadley Centre Climate Programme funded by BEIS and Defra. PMEL contribution numbers 5214, 5215, 5216, 5217, and 5247.
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  • 50
    Publication Date: 2022-06-13
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fine, E., MacKinnon, J., Alford, M., Middleton, L., Taylor, J., Mickett, J., Cole, S., Couto, N., Boyer, A., & Peacock, T. Double diffusion, shear instabilities, and heat impacts of a pacific summer water intrusion in the Beaufort Sea. Journal of Physical Oceanography, 52(2), (2022): 189–203, https://doi.org/10.1175/jpo-d-21-0074.1.
    Description: Pacific Summer Water eddies and intrusions transport heat and salt from boundary regions into the western Arctic basin. Here we examine concurrent effects of lateral stirring and vertical mixing using microstructure data collected within a Pacific Summer Water intrusion with a length scale of ∼20 km. This intrusion was characterized by complex thermohaline structure in which warm Pacific Summer Water interleaved in alternating layers of O(1) m thickness with cooler water, due to lateral stirring and intrusive processes. Along interfaces between warm/salty and cold/freshwater masses, the density ratio was favorable to double-diffusive processes. The rate of dissipation of turbulent kinetic energy (ε) was elevated along the interleaving surfaces, with values up to 3 × 10−8 W kg−1 compared to background ε of less than 10−9 W kg−1. Based on the distribution of ε as a function of density ratio Rρ, we conclude that double-diffusive convection is largely responsible for the elevated ε observed over the survey. The lateral processes that created the layered thermohaline structure resulted in vertical thermohaline gradients susceptible to double-diffusive convection, resulting in upward vertical heat fluxes. Bulk vertical heat fluxes above the intrusion are estimated in the range of 0.2–1 W m−2, with the localized flux above the uppermost warm layer elevated to 2–10 W m−2. Lateral fluxes are much larger, estimated between 1000 and 5000 W m−2, and set an overall decay rate for the intrusion of 1–5 years.
    Description: This work was supported by ONR Grant N00014-16-1-2378 and NSF Grants PLR 14-56705 and PLR-1303791, NSF Graduate Research Fellowship Grant DGE-1650112, as well as by the Postdoctoral Scholar Program at Woods Hole Oceanographic Institution, with funding provided by the Weston Howland Jr. Postdoctoral Scholarship.
    Keywords: Arctic ; Diapycnal mixing ; Diffusion ; Fluxes ; Instability ; Mixing ; Turbulence
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  • 51
    Publication Date: 2022-08-05
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(4), (2022): 491–502, https://doi.org/10.1175/jtech-d-21-0046.1.
    Description: The Air-Launched Autonomous Micro Observer (ALAMO) is a versatile profiling float that can be launched from an aircraft to make temperature and salinity observations of the upper ocean for over a year with high temporal sampling. Similar in dimensions and weight to an airborne expendable bathythermograph (AXBT), but with the same capability as Argo profiling floats, ALAMOs can be deployed from an A-sized (sonobuoy) launch tube, the stern ramp of a cargo plane, or the door of a small aircraft. Unlike an AXBT, however, the ALAMO float directly measures pressure, can incorporate additional sensors, and is capable of performing hundreds of ocean profiles compared to the single temperature profile provided by an AXBT. Upon deployment, the float parachutes to the ocean, releases the air-deployment package, and immediately begins profiling. Ocean profile data along with position and engineering information are transmitted via the Iridium satellite network, automatically processed, and then distributed by the Global Telecommunications System for use by the operational forecasting community. The ALAMO profiling mission can be modified using the two-way Iridium communications to change the profiling frequency and depth. Example observations are included to demonstrate the ALAMO’s utility.
    Description: This work was supported by the National Oceanographic and Atmospheric Administration under Grants NA13OAR4830233 (as part of CINAR Sandy Supplemental funding from the Disaster Relief Appropriations Act of 2013) and NA14OAR4320158 and by Office of Naval Research under Grants N0001416WX01384, N0001416WX01262, and N000141512293. ALAMO floats are commercially available from MRV Systems, LLC (https://www.mrvsys.com).
    Keywords: Ocean ; Hurricanes ; Ocean dynamics ; Mixed layer ; Aircraft observations ; Instrumentation/sensors
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  • 52
    Publication Date: 2022-07-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ballou, L., Brankovits, D., Chavez-Solis, E. M., Diaz, J. M. C., Gonzalez, B. C., Rohret, S., Salinas, A., Liu, A., Simoes, N., Alvarez, F., Miglietta, M. P., Iliffe, T. M., & Borda, E. An integrative re-evaluation of Typhlatya shrimp within the karst aquifer of the Yucatan Peninsula, Mexico. Scientific Reports, 12(1), (2022): 5302, https://doi.org/10.1038/s41598-022-08779-9.
    Description: The Yucatán Peninsula, Mexico is a carbonate platform well-known for extensive karst networks of densely stratified aquifer ecosystems. This aquifer supports diverse anchialine fauna, including species of the globally distributed anchialine shrimp genus Typhlatya (Atyidae). Four species (T. campecheae, T. pearsei, T. dzilamensis and T. mitchelli) are endemic to the Peninsula, of which three are federally listed in Mexico. This first integrative evaluation (i.e., molecular, morphological, broad geographic and type locality sampling, and environmental data) of Yucatán Typhlatya reveals considerable species identity conflict in prior phylogenetic assessments, broad species ranges, syntopy within cave systems and five genetic lineages (of which two are new to science). Despite sampling from the type locality of endangered T. campecheae, specimens (and molecular data) were indistinguishable from vulnerable T. pearsei. Ancestral/divergence reconstructions support convergent evolution of a low-salinity ancestor for a post-Paleogene arc Yucatán + Cuba Typhlatya clade within the anchialine Atyidae clade. A secondary adaptation for the coastal-restricted euryhaline (2–37 psu), Typhlatya dzilamensis (unknown conservation status) was identified, while remaining species lineages were low-salinity (〈 5 psu) adapted and found within the meteoric lens of inland and coastal caves. This study demonstrates the need for integrative/interdisciplinary approaches when conducting biodiversity assessments in complex and poorly studied aquifers.
    Description: Financial support for this study was provided by Texas A&M-CONACYT (TI, FA), TI, FA), PAPIIT IN208519 (DGAPA-UNAM) (FA), CONACYT Ciencia Básica A1-S-32846 (FA), Texas A&M University San Antonio (TAMUSA) Start-up Funds (EB), TAMUSA Research Council Grant (EB), TAMUSA Summer Faculty Grant and Fellowship (EB). NSF-REU/OCE: 1560242 supported AL and EB, and TAMU-Louis Stokes Alliance for Minority Participation (HRD: 1612776) supported SR, LS. This work was also supported by the NSF Graduate Research Fellowship Program (M1703014) and the Cave Conservancy Foundation (LB). Typhlatya sampling was sanctioned under collection permits SEMARNAT/SGPA/DGVS 05263/14, 004471/18, 05996/19.
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  • 53
    Publication Date: 2022-07-21
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kim, S., Park, J.-H., & Kug, J.-S. Tropical origins of the record-breaking 2020 summer rainfall extremes in East Asia. Scientific Reports, 12(1), (2022): 5366, https://doi.org/10.1038/s41598-022-09297-4.
    Description: The East Asian countries have experienced heavy rainfalls in boreal summer 2020. Here, we investigate the dynamical processes driving the rainfall extremes in East Asia during July and August. The Indian Ocean basin warming in June can be responsible for the anticyclonic anomalies in the western North Pacific (WNP), which modulate the zonally-elongated rainfalls in East Asia during July through an atmospheric Rossby wave train. In August, the East Asian rainfall increase is also related to the anticyclonic anomalies in the subtropical WNP, although it is located further north. The north tropical Atlantic warming in June partly contributes to the subtropical WNP rainfall decrease in August through a subtropical teleconnection. Then the subtropical WNP rainfall decrease drives the local anticyclonic anomalies that cause the rainfall increase in East Asia during August. The tropical Indian Ocean anomalously warmed in June and the subtropical WNP rainfall decreased in August 2020, which played a role in modulating the WNP anticyclonic anomalies. Therefore, the record-breaking rainfall extremes in East Asia that occurred during summer 2020 can be explained by the teleconnections associated with the tropical origins among the Indian, Pacific, and Atlantic Oceans and their interbasin interactions.
    Description: This work is supported by the National Research Foundation of Korea (NRF-2018R1A5A1024958 & NRF-2021M3I6A1086808).
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  • 54
    Publication Date: 2022-07-21
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kellogg, R., Moosburner, M., Cohen, N., Hawco, N., McIlvin, M., Moran, D., DiTullio, G., Subhas, A., Allen, A., & Saito, M. Adaptive responses of marine diatoms to zinc scarcity and ecological implications. Nature Communications, 13(1), (2022): 1995, https://doi.org/10.1038/s41467-022-29603-y.
    Description: Scarce dissolved surface ocean concentrations of the essential algal micronutrient zinc suggest that Zn may influence the growth of phytoplankton such as diatoms, which are major contributors to marine primary productivity. However, the specific mechanisms by which diatoms acclimate to Zn deficiency are poorly understood. Using global proteomic analysis, we identified two proteins (ZCRP-A/B, Zn/Co Responsive Protein A/B) among four diatom species that became abundant under Zn/Co limitation. Characterization using reverse genetic techniques and homology data suggests putative Zn/Co chaperone and membrane-bound transport complex component roles for ZCRP-A (a COG0523 domain protein) and ZCRP-B, respectively. Metaproteomic detection of ZCRPs along a Pacific Ocean transect revealed increased abundances at the surface (〈200 m) where dZn and dCo were scarcest, implying Zn nutritional stress in marine algae is more prevalent than previously recognized. These results demonstrate multiple adaptive responses to Zn scarcity in marine diatoms that are deployed in low Zn regions of the Pacific Ocean.
    Description: This work was funded by the National Science Foundation (OCE-1736599 and OCE-1657766), NIH (R01GM135709), Gordon and Betty Moore Foundation (GBMF3782) to M.A.S., and Simons Foundation award 544236 to N.R.C. This work was further supported by the National Science Foundation (NSF-OCE-1756884 and NSF-MCB-1818390), United States Department of Energy (DE-SC0018344), and Gordon and Betty Moore Foundation grants GBMF3828 and GBMF5006 to A.E.A.
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  • 55
    Publication Date: 2022-07-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Castellan, G., Angeletti, L., Montagna, P., & Taviani, M. Drawing the borders of the mesophotic zone of the Mediterranean Sea using satellite data. Scientific Reports, 12(1), (2022): 5585, https://doi.org/10.1038/s41598-022-09413-4.
    Description: The 30–150 m bathymetric range is commonly adopted in the literature to constrain the mesophotic zone. However, such depth interval varies depending on sunlight penetration, which is primarily a function of solar radiation incidence and water clarity. This is especially obvious in the Mediterranean Sea with its peculiar biophysical properties. Integrating information on light regime in the estimation of the bathymetric range of the mesophotic zone would provide a more robust definition, orienting conservation actions targeting its ecosystems. We present a first assessment of the spatial and vertical extension of the mesophotic zone in the Mediterranean Sea based upon light penetration, comparing our prediction with literature data. Our study also represents a baseline to monitor future variations in the bathymetric interval associated with the mesophotic zone in the Mediterranean Sea in relation to global changes.
    Description: This is ISMAR-CNR Bologna scientific contribution n. 2061. This work was supported by the “Convenzione MATTMCNR per i Programmi di Monitoraggio per la Direttiva sulla Strategia Marina (MSFD, Art. 11, Dir. 2008/56/CE)”, the H2020 Project RELIANCE (Grant agreement no: 101017501), the DG Environment programme IDEM (Grant agreement no. 11.0661/2017/750680/SUB/EN V.C2) and MIUR-PRIN 2017 GLIDE 2017FREXZY. This contribution is supported by Ph.D. program in Cultural and Natural Heritage of the University of Bologna (GC).
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  • 56
    Publication Date: 2022-07-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Millstein, J. D., Minchew, B. M., & Pegler, S. S. Ice viscosity is more sensitive to stress than commonly assumed. Communications Earth & Environment, 3(1), (2022): 57, https://doi.org/10.1038/s43247-022-00385-x.
    Description: Accurate representation of the viscous flow of ice is fundamental to understanding glacier dynamics and projecting sea-level rise. Ice viscosity is often described by a simple but largely untested and uncalibrated constitutive relation, Glen’s Flow Law, wherein the rate of deformation is proportional to stress raised to the power n. The value n = 3 is commonly prescribed in ice-flow models, though observations and experiments support a range of values across stresses and temperatures found on Earth. Here, we leverage recent remotely-sensed observations of Antarctic ice shelves to show that Glen’s Flow Law approximates the viscous flow of ice with n = 4.1 ± 0.4 in fast-flowing areas. The viscosity and flow rate of ice are therefore more sensitive to changes in stress than most ice-flow models allow. By calibrating the governing equation of ice deformation, our result is a pathway towards improving projections of future glacier change.
    Description: .D.M. was partially funded through an NSF Graduate Research Fellowship. J.D.M. and B.M.M. where partially funded through NSF-NERC award 1853918. B.M.M. received additional funding through NSF-NERC award 1739031.
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  • 57
    Publication Date: 2022-07-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhou, Y.-L., Mara, P., Cui, G.-J., Edgcomb, V., & Wang, Y. Microbiomes in the Challenger Deep slope and bottom-axis sediments. Nature Communications, 13(1), (2022): 1515, https://doi.org/10.1038/s41467-022-29144-4.
    Description: Hadal trenches are the deepest and most remote regions of the ocean. The 11-kilometer deep Challenger Deep is the least explored due to the technical challenges of sampling hadal depths. It receives organic matter and heavy metals from the overlying water column that accumulate differently across its V-shaped topography. Here, we collected sediments across the slope and bottom-axis of the Challenger Deep that enable insights into its in situ microbial communities. Analyses of 586 metagenome-assembled genomes retrieved from 37 metagenomes show distinct diversity and metabolic capacities between bottom-axis and slope sites. 26% of prokaryotic 16S rDNA reads in metagenomes were novel, with novelty increasing with water and sediment depths. These predominantly heterotrophic microbes can recycle macromolecules and utilize simple and complex hydrocarbons as carbon sources. Metagenome and metatranscriptome data support reduction and biotransformation of arsenate for energy gain in sediments that present a two-fold greater accumulation of arsenic compared to non-hadal sites. Complete pathways for anaerobic ammonia oxidation are predominantly identified in genomes recovered from bottom-axis sediments compared to slope sites. Our results expand knowledge of microbially-mediated elemental cycling in hadal sediments, and reveal differences in distribution of processes involved in nitrogen loss across the trench.
    Description: This study was supported by the Strategic Priority Research Program B of the Chinese Academy of Sciences (No. XDB06010201 to Y.W.).
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  • 58
    Publication Date: 2022-12-09
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(7), (2022): 1333-1350, https://doi.org/10.1175/jpo-d-21-0298.1.
    Description: Idealized numerical simulations were conducted to investigate the influence of channel curvature on estuarine stratification and mixing. Stratification is decreased and tidal energy dissipation is increased in sinuous estuaries compared to straight channel estuaries. We applied a vertical salinity variance budget to quantify the influence of straining and mixing on stratification. Secondary circulation due to the channel curvature is found to affect stratification in sinuous channels through both lateral straining and enhanced vertical mixing. Alternating negative and positive lateral straining occur in meanders upstream and downstream of the bend apex, respectively, corresponding to the normal and reversed secondary circulation with curvature. The vertical mixing is locally enhanced in curved channels with the maximum mixing located upstream of the bend apex. Bend-scale bottom salinity fronts are generated near the inner bank upstream of the bend apex as a result of interaction between the secondary flow and stratification. Shear mixing at bottom fronts, instead of overturning mixing by the secondary circulation, provides the dominant mechanism for destruction of stratification. Channel curvature can also lead to increased drag, and using a Simpson number with this increased drag coefficient can relate the decrease in stratification with curvature to the broader estuarine parameter space.
    Description: The research leading to these results was funded by NSF Awards OCE-1634481 and OCE-2123002.
    Description: 2022-12-09
    Keywords: Estuaries ; Mixing ; Secondary circulation ; Fronts ; Tides ; Numerical analysis/modeling
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  • 59
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    American Meteorological Society
    Publication Date: 2022-11-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(5),(2022): 65-979, https://doi.org/10.1175/jpo-d-21-0174.1.
    Description: The mechanisms of wind-forced variability of the zonal overturning circulation (ZOC) are explored using an idealized shallow water numerical model, quasigeostrophic theory, and simple analytic conceptual models. Two wind-forcing scenarios are considered: midlatitude variability in the subtropical/subpolar gyres and large-scale variability spanning the equator. It is shown that the midlatitude ZOC exchanges water with the western boundary current and attains maximum amplitude on the same order of magnitude as the Ekman transport at a forcing period close to the basin-crossing time scale for baroclinic Rossby waves. Near the equator, large-scale wind variations force a ZOC that increases in amplitude with decreasing forcing period such that wind stress variability on annual time scales forces a ZOC of O(50) Sv (1 Sv ≡ 106 m3 s−1). For both midlatitude and low-latitude variability the ZOC and its related heat transport are comparable to those of the meridional overturning circulation. The underlying physics of the ZOC relies on the influences of the variation of the Coriolis parameter with latitude on both the geostrophic flow and the baroclinic Rossby wave phase speed as the fluid adjusts to time-varying winds.
    Description: This study was supported by National Science Foundation Grants OCE-1947290 and OCE-2122633.
    Description: 2022-11-01
    Keywords: Ekman pumping/transport ; Mass fluxes/transport ; Planetary waves ; Rossby waves
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  • 60
    Publication Date: 2022-11-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(5), (2022): 595–617, https://doi.org/10.1175/jtech-d-21-0039.1.
    Description: The future Surface Water and Ocean Topography (SWOT) mission aims to map sea surface height (SSH) in wide swaths with an unprecedented spatial resolution and subcentimeter accuracy. The instrument performance needs to be verified using independent measurements in a process known as calibration and validation (Cal/Val). The SWOT Cal/Val needs in situ measurements that can make synoptic observations of SSH field over an O(100) km distance with an accuracy matching the SWOT requirements specified in terms of the along-track wavenumber spectrum of SSH error. No existing in situ observing system has been demonstrated to meet this challenge. A field campaign was conducted during September 2019–January 2020 to assess the potential of various instruments and platforms to meet the SWOT Cal/Val requirement. These instruments include two GPS buoys, two bottom pressure recorders (BPR), three moorings with fixed conductivity–temperature–depth (CTD) and CTD profilers, and a glider. The observations demonstrated that 1) the SSH (hydrostatic) equation can be closed with 1–3 cm RMS residual using BPR, CTD mooring and GPS SSH, and 2) using the upper-ocean steric height derived from CTD moorings enable subcentimeter accuracy in the California Current region during the 2019/20 winter. Given that the three moorings are separated at 10–20–30 km distance, the observations provide valuable information about the small-scale SSH variability associated with the ocean circulation at frequencies ranging from hourly to monthly in the region. The combined analysis sheds light on the design of the SWOT mission postlaunch Cal/Val field campaign.
    Description: The research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004). All authors are supported by the SWOT project. J. T. Farrar was partially supported by NASA NNX16AH76G.
    Description: 2022-11-01
    Keywords: Internal waves ; Ocean dynamics ; Small scale processes ; Altimetry ; Global positioning systems (GPS) ; In situ oceanic observations ; Ship observations
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  • 61
    Publication Date: 2022-11-04
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(11), (2022): 2627-2641, https://doi.org/10.1175/jpo-d-22-0090.1.
    Description: Changes in dynamic manometric sea level ζm represent mass-related sea level changes associated with ocean circulation and climate. We use twin model experiments to quantify magnitudes and spatiotemporal scales of ζm variability caused by barometric pressure pa loading at long periods (≳1 month) and large scales (≳300km) relevant to Gravity Recovery and Climate Experiment (GRACE) ocean data. Loading by pa drives basin-scale monthly ζm variability with magnitudes as large as a few centimeters. Largest ζm signals occur over abyssal plains, on the shelf, and in marginal seas. Correlation patterns of modeled ζm are determined by continental coasts and H/f contours (H is ocean depth and f is Coriolis parameter). On average, ζm signals forced by pa represent departures of ≲10% and ≲1% from the inverted-barometer effect ζib on monthly and annual periods, respectively. Basic magnitudes, spatial patterns, and spectral behaviors of ζm from the model are consistent with scaling arguments from barotropic potential vorticity conservation. We also compare ζm from the model driven by pa to ζm from GRACE observations. Modeled and observed ζm are significantly correlated across parts of the tropical and extratropical oceans, on shelf and slope regions, and in marginal seas. Ratios of modeled to observed ζm magnitudes are as large as ∼0.2 (largest in the Arctic Ocean) and qualitatively agree with analytical theory for the gain of the transfer function between ζm forced by pa and wind stress. Results demonstrate that pa loading is a secondary but nevertheless important contributor to monthly mass variability from GRACE over the ocean.
    Description: The authors acknowledge support from the National Aeronautics and Space Administration through the GRACE Follow-On Science Team (Grant 80NSSC20K0728) and the Sea Level Change Team (Grant 80NSSC20K1241). The contribution from I. F. and O. W. represents research carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (Grant 80NM0018D0004).
    Keywords: Barotropic flows ; Large-scale motions ; Ocean circulation ; Planetary waves ; Potential vorticity ; Sea level
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  • 62
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of [publisher] for personal use, not for redistribution. The definitive version was published in Farrar, J. T., Durland, T., Jayne, S. R., & Price, J. F. Long-distance radiation of Rossby Waves from the equatorial current system. Journal of Physical Oceanography, 51(6), (2021): 1947–1966, https://doi.org/10.1175/JPO-D-20-0048.1.
    Description: Measurements from satellite altimetry are used to show that sea surface height (SSH) variability throughout much of the North Pacific Ocean is coherent with the SSH signal of the tropical instability waves (TIWs) that result from instabilities of the equatorial currents. This variability has regular phase patterns consistent with freely propagating barotropic Rossby waves radiating energy away from the unstable equatorial currents, and the waves clearly propagate from the equatorial region to at least 30°N. The pattern of SSH variance at TIW frequencies exhibits remarkable patchiness on scales of hundreds of kilometers, which we interpret as being due to the combined effects of wave reflection, refraction, and interference. North of 40°N, more than 6000 km from the unstable equatorial currents, the SSH field remains coherent with the near-equatorial SSH variability, but it is not as clear whether the variability at the higher latitudes is a simple result of barotropic wave radiation from the tropical instability waves. Even more distant regions, as far north as the Aleutian Islands off of Alaska and the Kamchatka Peninsula of eastern Russia, have SSH variability that is significantly coherent with the near-equatorial instabilities. The variability is not well represented in the widely used gridded SSH data product commonly referred to as the AVISO or DUACS product, and this appears to be a result of spatial variations in the filtering properties of the objective mapping scheme.
    Description: This work was supported by NASA Grants NNX13AE46G, NNX14AM71G, and NNX17AH54G.
    Keywords: Pacific Ocean ; Barotropic flows ; Instability ; Planetary waves ; Rossby waves ; Topographic effects
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  • 63
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(6),(2021): 1842–1872, https://doi.org/10.1175/JPO-D-20-0153.1.
    Description: Radiocarbon dates of fossil carbonates sampled from sediment cores and the seafloor have been used to infer that deep ocean ventilation during the last ice age was different from today. In this first of two companion papers, the time-averaged abyssal circulation in the modern Atlantic is estimated by combining a hydrographic climatology, observational estimates of volume transports, Argo float velocities at 1000 m, radiocarbon data, and geostrophic dynamics. Different estimates of modern circulation, obtained from different prior assumptions about the abyssal flow and different errors in the geostrophic balance, are produced for use in a robust interpretation of fossil records in terms of deviations from the present-day flow, which is undertaken in Part II. We find that, for all estimates, the meridional transport integrated zonally and averaged over a hemisphere, ⟨Vk⟩, is southward between 1000 and 4000 m in both hemispheres, northward between 4000 and 5000 m in the South Atlantic, and insignificant between 4000 and 5000 m in the North Atlantic. Estimates of ⟨Vk⟩ obtained from two distinct prior circulations—one based on a level of no motion at 4000 m and one based on Argo float velocities at 1000 m—become statistically indistinguishable when Δ14C data are considered. The transport time scale, defined as τk=Vk/⟨Vk⟩, where Vk is the volume of the kth layer, is estimated to about a century between 1000 and 3000 m in both the South and North Atlantic, 124 ± 9 yr (203 ± 23 yr) between 3000 and 4000 m in the South (North) Atlantic, and 269 ± 115 yr between 4000 and 5000 m in the South Atlantic.
    Description: This work has been supported by Grant OCE-1702417 from the U.S. National Science Foundation.
    Keywords: Atlantic Ocean ; Abyssal circulation ; Tracers ; Inverse methods
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  • 64
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Diaz, B. P., Knowles, B., Johns, C. T., Laber, C. P., Bondoc, K. G. V., Haramaty, L., Natale, F., Harvey, E. L., Kramer, S. J., Bolaños, L. M., Lowenstein, D. P., Fredricks, H. F., Graff, J., Westberry, T. K., Mojica, K. D. A., Haëntjens, N., Baetge, N., Gaube, P., Boss, E., Carlson, C. A., Behrenfeld, M. J., Van Mooy, B. A. S., Bidle, K. D. Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic. Nature Communications, 12(1), (2021): 6634, https://doi.org/10.1038/s41467-021-26836-1.
    Description: Seasonal shifts in phytoplankton accumulation and loss largely follow changes in mixed layer depth, but the impact of mixed layer depth on cell physiology remains unexplored. Here, we investigate the physiological state of phytoplankton populations associated with distinct bloom phases and mixing regimes in the North Atlantic. Stratification and deep mixing alter community physiology and viral production, effectively shaping accumulation rates. Communities in relatively deep, early-spring mixed layers are characterized by low levels of stress and high accumulation rates, while those in the recently shallowed mixed layers in late-spring have high levels of oxidative stress. Prolonged stratification into early autumn manifests in negative accumulation rates, along with pronounced signatures of compromised membranes, death-related protease activity, virus production, nutrient drawdown, and lipid markers indicative of nutrient stress. Positive accumulation renews during mixed layer deepening with transition into winter, concomitant with enhanced nutrient supply and lessened viral pressure.
    Description: This work was made possible by NASA’s Earth Science Program in support of the North Atlantic Aerosol and Marine Ecosystem Study (15-RRNES15-0011 and 0NSSC18K1563 to K.D.B.; NNX15AF30G to M.J.B.), as well as with support from the National Science Foundation (OIA-2021032 to K.D.B., OCE-157943 to C.A.C., and OCE-1756254 to B.A.S.V.M.), the Gordon and Betty Moore Foundation (Award# 3789 to K.G.V.B.), and NASA’s Future Investigators in Space Science and Technology program (FINESST; grant #826380 to K.D.B.; graduate support to BD).
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  • 65
    Publication Date: 2022-11-18
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shu, Y., Nielsen, S. G., Le Roux, V., Wörner, G., Blusztajn, J., & Auro, M. Sources of dehydration fluids underneath the Kamchatka arc. Nature Communications, 13(1), (2022): 4467, https://doi.org/10.1038/s41467-022-32211-5.
    Description: Fluids mediate the transport of subducted slab material and play a crucial role in the generation of arc magmas. However, the source of subduction-derived fluids remains debated. The Kamchatka arc is an ideal subduction zone to identify the source of fluids because the arc magmas are comparably mafic, their source appears to be essentially free of subducted sediment-derived components, and subducted Hawaii-Emperor Seamount Chain (HESC) is thought to contribute a substantial fluid flux to the Kamchatka magmas. Here we show that Tl isotope ratios are unique tracers of HESC contribution to Kamchatka arc magma sources. In conjunction with trace element ratios and literature data, we trace the progressive dehydration and melting of subducted HESC across the Kamchatka arc. In succession, serpentine (〈100 km depth), lawsonite (100–250 km depth) and phengite (〉250 km depth) break down and produce fluids that contribute to arc magmatism at the Eastern Volcanic Front (EVF), Central Kamchatka Depression (CKD), and Sredinny Ridge (SR), respectively. However, given the Tl-poor nature of serpentine and lawsonite fluids, simultaneous melting of subducted HESC is required to explain the HESC-like Tl isotope signatures observed in EVF and CKD lavas. In the absence of eclogitic crust melting processes in this region of the Kamchatka arc, we propose that progressive dehydration and melting of a HESC-dominated mélange offers the most compelling interpretation of the combined isotope and trace element data.
    Description: This study was financially supported by grants from the National Natural Science Foundation of China (NSFC) (Grant No. 41903008) and Chinese Postdoctoral Science Foundation (Grant No. 2019M660153) to Y.S., NSF (Grant No. EAR-1829546) to S.G.N. and NSF (Grant No. EAR-1855302) to V.L.R.
    Keywords: Geochemistry ; Marine chemistry
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  • 66
    Publication Date: 2022-12-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 103(6), (2022): E1502-E1521, https://doi.org/10.1175/bams-d-21-0227.1.
    Description: Climate observations inform about the past and present state of the climate system. They underpin climate science, feed into policies for adaptation and mitigation, and increase awareness of the impacts of climate change. The Global Climate Observing System (GCOS), a body of the World Meteorological Organization (WMO), assesses the maturity of the required observing system and gives guidance for its development. The Essential Climate Variables (ECVs) are central to GCOS, and the global community must monitor them with the highest standards in the form of Climate Data Records (CDR). Today, a single ECV—the sea ice ECV—encapsulates all aspects of the sea ice environment. In the early 1990s it was a single variable (sea ice concentration) but is today an umbrella for four variables (adding thickness, edge/extent, and drift). In this contribution, we argue that GCOS should from now on consider a set of seven ECVs (sea ice concentration, thickness, snow depth, surface temperature, surface albedo, age, and drift). These seven ECVs are critical and cost effective to monitor with existing satellite Earth observation capability. We advise against placing these new variables under the umbrella of the single sea ice ECV. To start a set of distinct ECVs is indeed critical to avoid adding to the suboptimal situation we experience today and to reconcile the sea ice variables with the practice in other ECV domains.
    Description: PH’s contribution was funded under the Australian Government’s Antarctic Science Collaboration Initiative program, and contributes to Project 6 of the Australian Antarctic Program Partnership (ASCI000002). PH acknowledges support through the Australian Antarctic Science Projects 4496 and 4506, and the International Space Science Institute (Bern, Switzerland) project #405.
    Description: 2022-12-01
    Keywords: Sea ice ; Climate change ; Climatology ; Climate records
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  • 67
    Publication Date: 2022-11-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shero, M. R., Kirkham, A. L., Costa, D. P., & Burns, J. M. Iron mobilization during lactation reduces oxygen stores in a diving mammal. Nature Communications, 13(1), (2022): 4322, https://doi.org/10.1038/s41467-022-31863-7.
    Description: The profound impacts that maternal provisioning of finite energy resources has on offspring survival have been extensively studied across mammals. This study shows that in addition to calories, high hemoprotein concentrations in diving mammals necessitates exceptional female-to-pup iron transfer. Numerous indices of iron mobilization (ferritin, serum iron, total-iron-binding-capacity, transferrin saturation) were significantly elevated during lactation in adult female Weddell seals (Leptonychotes weddellii), but not in skip-breeders. Iron was mobilized from endogenous stores for incorporation into the Weddell seal’s milk at concentrations up to 100× higher than terrestrial mammals. Such high rates of iron offload to offspring drew from the female’s own heme stores and led to compromised physiologic dive capacities (hemoglobin, myoglobin, and total body oxygen stores) after weaning their pups, which was further reflected in shorter dive durations. We demonstrate that lactational iron transfer shapes physiologic dive thresholds, identifying a cost of reproduction to a marine mammal.
    Description: This research was conducted with support from NSF ANT-0838892 to DPC; ANT-0838937 and ANT-1246463 to JMB (which also supported ALK and MRS); and The Investment in Science Fund at WHOI to MRS.
    Keywords: Animal physiology ; Ecophysiology ; Homeostasis
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  • 68
    Publication Date: 2022-11-27
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(6), (2022): 1233-1244, https://doi.org/10.1175/jpo-d-21-0223.1.
    Description: The Sverdrup relation is the backbone of wind-driven circulation theory; it is a simple relation between the meridional transport of the wind-driven circulation in the upper ocean and the wind stress curl. However, the relation is valid for steady circulation only. In this study, a time-dependent Sverdrup relation is postulated, in which the meridional transport in a time-dependent circulation is the sum of the local wind stress curl term and a time-delayed term representing the effect of the eastern boundary condition. As an example, this time-dependent Sverdrup relation is evaluated through its application to the equatorial circulation in the Indian Ocean, using reanalysis data and a reduced gravity model. Close examination reveals that the southward Somali Current occurring during boreal winter is due to the combination of the local wind stress curl in the Arabian Sea and delayed signals representing the time change of layer thickness at the eastern boundary.
    Description: This work is supported by NSFC (41822602, 41976016, 42005035, 42076021), the Strategic Priority Research Program of Chinese Academy of Sciences (XDB42000000, XDA 20060502), Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0306), Guangdong Basic and Applied Basic Research Foundation (2021A1515011534), Youth Innovation Promotion Association CAS, ISEE2021ZD01, and LTOZZ2002. The numerical simulation is supported by the High-Performance Computing Division in the South China Sea Institute of Oceanology.
    Description: 2022-11-27
    Keywords: Ocean circulation ; Ocean dynamics ; Rossby waves ; Wind stress curl
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  • 69
    Publication Date: 2022-12-21
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(12), (2022): 2923–2933, https://doi.org/10.1175/jpo-d-22-0064.1.
    Description: The characteristics and dynamics of depth-average along-shelf currents at monthly and longer time scales are examined using 17 years of observations from the Martha’s Vineyard Coastal Observatory on the southern New England inner shelf. Monthly averages of the depth-averaged along-shelf current are almost always westward, with the largest interannual variability in winter. There is a consistent annual cycle with westward currents of 5 cm s−1 in summer decreasing to 1–2 cm s−1 in winter. Both the annual cycle and interannual variability in the depth-average along-shelf current are predominantly driven by the along-shelf wind stress. In the absence of wind forcing, there is a westward flow of ∼5 cm s−1 throughout the year. At monthly time scales, the depth-average along-shelf momentum balance is primarily between the wind stress, surface gravity wave–enhanced bottom stress, and an opposing pressure gradient that sets up along the southern New England shelf in response to the wind. Surface gravity wave enhancement of bottom stress is substantial over the inner shelf and is essential to accurately estimating the bottom stress variation across the inner shelf.
    Description: The National Science Foundation, Woods Hole Oceanographic Institution, the Massachusetts Technology Collaborative, and the Office of Naval Research have supported the construction and maintenance of MVCO. The analysis presented here was partially funded by the National Science Foundation under Grants OCE 1558874 and OCE 1655686.
    Keywords: Continental shelf/slope ; Coastal flows ; Momentum ; Ocean dynamics ; Wind stress
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 70
    Publication Date: 2022-12-21
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(12), (2022): 2909-2921, https://doi.org/10.1175/jpo-d-22-0063.1.
    Description: A remarkably consistent Lagrangian upwelling circulation at monthly and longer time scales is observed in a 17-yr time series of current profiles in 12 m of water on the southern New England inner shelf. The upwelling circulation is strongest in summer, with a current magnitude of ∼1 cm s−1, which flushes the inner shelf in ∼2.5 days. The average winter upwelling circulation is about one-half of the average summer upwelling circulation, but with larger month-to-month variations driven, in part, by cross-shelf wind stresses. The persistent upwelling circulation is not wind-driven; it is driven by a cross-shelf buoyancy force associated with less-dense water near the coast. The cross-shelf density gradient is primarily due to temperature in summer, when strong surface heating warms shallower nearshore water more than deeper offshore water, and to salinity in winter, caused by fresher water near the coast. In the absence of turbulent stresses, the cross-shelf density gradient would be in a geostrophic, thermal-wind balance with the vertical shear in the along-shelf current. However, turbulent stresses over the inner shelf attributable to strong tidal currents and wind stress cause a partial breakdown of the thermal-wind balance that releases the buoyancy force, which drives the observed upwelling circulation. The presence of a cross-shelf density gradient has a profound impact on exchange across this inner shelf. Many inner shelves are characterized by turbulent stresses and cross-shelf density gradients with lighter water near the coast, suggesting turbulent thermal-wind-driven coastal upwelling may be a broadly important cross-shelf exchange mechanism.
    Description: The National Science Foundation, Woods Hole Oceanographic Institution, the Massachusetts Technology Collaborative, and the Office of Naval Research have supported the construction and maintenance of MVCO. The analysis presented here was partially funded by the National Science Foundation under Grants OCE 1558874 and OCE 1655686.
    Keywords: Buoyancy ; Coastal flows ; Currents ; Dynamics ; Lagrangian circulation/transport ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
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  • 71
    Publication Date: 2022-12-16
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(7), (2022): 1415–1430. https://doi.org/10.1175/JPO-D-21-0147.1.
    Description: Strong subinertial variability near a seamount at the Xisha Islands in the South China Sea was revealed by mooring observations from January 2017 to January 2018. The intraseasonal deep flows presented two significant frequency bands, with periods of 9–20 and 30–120 days, corresponding to topographic Rossby waves (TRWs) and deep eddies, respectively. The TRW and deep eddy signals explained approximately 60% of the kinetic energy of the deep subinertial currents. The TRWs at the Ma, Mb, and Mc moorings had 297, 262, and 274 m vertical trapping lengths, and ∼43, 38, and 55 km wavelengths, respectively. Deep eddies were independent from the upper layer, with the largest temperature anomaly being 〉0.4°C. The generation of the TRWs was induced by mesoscale perturbations in the upper layer. The interaction between the cyclonic–anticyclonic eddy pair and the seamount topography contributed to the generation of deep eddies. Owing to the potential vorticity conservation, the westward-propagating tilted interface across the eddy pair squeezed the deep-water column, thereby giving rise to negative vorticity west of the seamount. The strong front between the eddy pair induced a northward deep flow, thereby generating a strong horizontal velocity shear because of lateral friction and enhanced negative vorticity. Approximately 4 years of observations further confirmed the high occurrence of TRWs and deep eddies. TRWs and deep eddies might be crucial for deep mixing near rough topographies by transferring mesoscale energy to small scales.
    Description: This work was supported by the National Natural Science Foundation of China (92158204, 91958202, 42076019, 41776036, 91858203), the Open Project Program of State Key Laboratory of Tropical Oceanography (project LTOZZ2001), and Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0304).
    Description: 2022-12-16
    Keywords: Abyssal circulation ; Ocean circulation ; Ocean dynamics ; Intraseasonal variability
    Repository Name: Woods Hole Open Access Server
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  • 72
    Publication Date: 2022-09-16
    Description: Marine protists abound, but are challenging to study, and their interactions with other microbes in nature remain largely unknown. We captured wild predatory protists (choanoflagellates) and discovered a divergent, obligately co-associated bacterial group that lives by extracting resources from these predators.
    Type: Article , NonPeerReviewed
    Format: text
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  • 73
    Publication Date: 2022-11-14
    Description: The Indo-Pacific Warm Pool (IPWP) exerts a dominant role in global climate by releasing huge amounts of water vapour and latent heat to the atmosphere and modulating upper ocean heat content (OHC), which has been implicated in modern climate change1. The long-term variations of IPWP OHC and their effect on monsoonal hydroclimate are, however, not fully explored. Here, by combining geochemical proxies and transient climate simulations, we show that changes of IPWP upper (0–200 m) OHC over the past 360,000 years exhibit dominant precession and weaker obliquity cycles and follow changes in meridional insolation gradients, and that only 30%–40% of the deglacial increases are related to changes in ice volume. On the precessional band, higher upper OHC correlates with oxygen isotope enrichments in IPWP surface water and concomitant depletion in East Asian precipitation as recorded in Chinese speleothems. Using an isotope-enabled air–sea coupled model, we suggest that on precessional timescales, variations in IPWP upper OHC, more than surface temperature, act to amplify the ocean–continent hydrological cycle via the convergence of moisture and latent heat. From an energetic viewpoint, the coupling of upper OHC and monsoon variations, both coordinated by insolation changes on orbital timescales, is critical for regulating the global hydroclimate.
    Type: Article , PeerReviewed
    Format: text
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