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  • 1
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Harvey, Ben P; McKeown, Niall J; Rastrick, S P S; Bertolini, Camilla; Foggo, Andy; Graham, Helen; Hall-Spencer, Jason M; Milazzo, Marco; Shaw, Paul W; Small, Daniel; Moore, Pippa J (2016): Individual and population-level responses to ocean acidification. Scientific Reports, 6, 20194, https://doi.org/10.1038/srep20194
    Publication Date: 2024-03-15
    Description: Ocean acidification is predicted to have detrimental effects on many marine organisms and ecological processes. Despite growing evidence for direct impacts on specific species, few studies have simultaneously considered the effects of ocean acidification on individuals (e.g. consequences for energy budgets and resource partitioning) and population level demographic processes. Here we show that ocean acidification increases energetic demands on gastropods resulting in altered energy allocation, i.e. reduced shell size but increased body mass. When scaled up to the population level, long-term exposure to ocean acidification altered population demography, with evidence of a reduction in the proportion of females in the population and genetic signatures of increased variance in reproductive success among individuals. Such increased variance enhances levels of short-term genetic drift which is predicted to inhibit adaptation. Our study indicates that even against a background of high gene flow, ocean acidification is driving individual- and population-level changes that will impact eco-evolutionary trajectories.
    Keywords: Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CO2 vent; Coast and continental shelf; Dry mass; EXP; Experiment; Field experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Hexaplex trunculus; Levante_OA; Mediterranean Sea; Mollusca; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric titration; Registration number of species; Respiration; Respiration rate, oxygen; Salinity; Salinity, standard error; Sex; Single species; Site; Species; Temperate; Temperature, water; Temperature, water, standard error; Treatment; Type; Uniform resource locator/link to reference; Wet mass
    Type: Dataset
    Format: text/tab-separated-values, 3024 data points
    Location Call Number Expected Availability
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  • 2
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    Unknown
    PANGAEA
    In:  Supplement to: Agostini, Sylvain; Harvey, Ben P; Wada, Shigeki; Kon, Koetsu; Milazzo, Marco; Inaba, Kazuo; Hall-Spencer, Jason M (2018): Ocean acidification drives community shifts towards simplified non-calcified habitats in a subtropical−temperate transition zone. Scientific Reports, 8(1), https://doi.org/10.1038/s41598-018-29251-7
    Publication Date: 2024-03-15
    Description: Rising atmospheric concentrations of carbon dioxide are causing surface seawater pH and carbonate ion concentrations to fall in a process known as ocean acidification. To assess the likely ecological effects of ocean acidification we compared intertidal and subtidal marine communities at increasing levels of pCO2 at recently discovered volcanic seeps off the Pacific coast of Japan (34° N). This study region is of particular interest for ocean acidification research as it has naturally low levels of surface seawater pCO2 (280–320 µatm) and is located at a transition zone between temperate and sub-tropical communities. We provide the first assessment of ocean acidification effects at a biogeographic boundary. Marine communities exposed to mean levels of pCO2 predicted by 2050 experienced periods of low aragonite saturation and high dissolved inorganic carbon. These two factors combined to cause marked community shifts and a major decline in biodiversity, including the loss of key habitat-forming species, with even more extreme community changes expected by 2100. Our results provide empirical evidence that near-future levels of pCO2 shift sub-tropical ecosystems from carbonate to fleshy algal dominated systems, accompanied by biodiversity loss and major simplification of the ecosystem.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; CO2 vent; Coast and continental shelf; Community composition and diversity; Coverage; Entire community; EXP; Experiment; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Individuals; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Rocky-shore community; Salinity; Salinity, standard deviation; Shikine; Site; Temperate; Temperature, water; Temperature, water, standard deviation; Type
    Type: Dataset
    Format: text/tab-separated-values, 21650 data points
    Location Call Number Expected Availability
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  • 3
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    PANGAEA
    In:  Supplement to: Harvey, Ben P; Agostini, Sylvain; Wada, Shigeki; Inaba, Kazuo; Hall-Spencer, Jason M (2018): Dissolution: The Achilles' Heel of the Triton Shell in an Acidifying Ocean. Frontiers in Marine Science, 5, https://doi.org/10.3389/fmars.2018.00371
    Publication Date: 2024-03-15
    Description: Ocean acidification is expected to negatively impact many calcifying marine organisms by impairing their ability to build their protective shells and skeletons, and by causing dissolution and erosion. Here we investigated the large predatory “triton shell” gastropod Charonia lampas in acidified conditions near CO2 seeps off Shikine-jima (Japan) and compared them with individuals from an adjacent bay with seawater pH at present-day levels (outside the influence of the CO2 seep). By using computed tomography we show that acidification negatively impacts their thickness, density, and shell structure, causing visible deterioration to the shell surface. Periods of aragonite undersaturation caused the loss of the apex region and exposing body tissues. While gross calcification rates were likely reduced near CO2 seeps, the corrosive effects of acidification were far more pronounced around the oldest parts of the shell. As a result, the capacity of C. lampas to maintain their shells under ocean acidification may be strongly driven by abiotic dissolution and erosion, and not under biological control of the calcification process. Understanding the response of marine calcifying organisms and their ability to build and maintain their protective shells and skeletons will be important for our understanding of future marine ecosystems.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Charonia lampas; CO2 vent; Coast and continental shelf; EXP; Experiment; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Growth/Morphology; Location; Mollusca; North Pacific; Number; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Position; Registration number of species; Salinity; Salinity, standard deviation; Shell density; Shell density, standard error; Shikine; Single species; Species; Temperature, water; Temperature, water, standard deviation; Thickness; Thickness, standard error; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 1300 data points
    Location Call Number Expected Availability
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  • 4
    Publication Date: 2024-03-15
    Description: Diatoms are so important in ocean food-webs that any human induced changes in their abundance could have major effects on the ecology of our seas. The large chain-forming diatom Biddulphia biddulphiana greatly increases in abundance as pCO2 increases along natural seawater CO2 gradients in the north Pacific Ocean. In areas with reference levels of pCO2, it was hard to find, but as seawater carbon dioxide levels rose, it replaced seaweeds and became the main habitat-forming species on the seabed. This diatom algal turf supported a marine invertebrate community that was much less diverse and completely differed from the benthic communities found at present-day levels of pCO2. Seawater CO2 enrichment stimulated the growth and photosynthetic efficiency of benthic diatoms, but reduced the abundance of calcified grazers such as gastropods and sea urchins. These observations suggest that ocean acidification will shift photic zone community composition so that coastal food-web structure and ecosystem function are homogenised, simplified, and more strongly affected by seasonal algal blooms.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Diatoms; EXP; Experiment; Fluorescence, maximum; Fluorescence, minimum; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gross primary production of oxygen per chlorophyll a; Light saturation point; Maximal absolute electron transfer rate; Maximum light use efficiency; Maximum photochemical quantum yield of photosystem II; Net primary production of oxygen per chlorophyll a; Number; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric; Potentiometric titration; Registration number of species; Replicates; Respiration rate oxygen per chlorophyll a; Salinity; Salinity, standard deviation; Shikine; Site; Species; Species richness; Temperature, water; Temperature, water, standard deviation; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 17717 data points
    Location Call Number Expected Availability
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  • 5
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Diatoms; EXP; Experiment; Fluorescence, maximum; Fluorescence, minimum; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gross primary production of oxygen per chlorophyll a; Light saturation point; Maximal absolute electron transfer rate; Maximum light use efficiency; Maximum photochemical quantum yield of photosystem II; Net primary production of oxygen per chlorophyll a; Number; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric; Potentiometric titration; Registration number of species; Replicates; Respiration rate oxygen per chlorophyll a; Salinity; Salinity, standard deviation; Shikine; Site; Species; Species richness; Temperature, water; Temperature, water, standard deviation; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 17717 data points
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Biddulphia biddulphiana; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chromista; CO2 vent; Coast and continental shelf; Community composition and diversity; Diatoms; Entire community; EXP; Experiment; Field observation; Fluorescence, maximum; Fluorescence, minimum; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gross primary production of oxygen per chlorophyll a; Light saturation point; Maximal absolute electron transfer rate; Maximum light use efficiency; Maximum photochemical quantum yield of photosystem II; Net primary production of oxygen per chlorophyll a; North Pacific; Number; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Phytoplankton; Potentiometric; Potentiometric titration; Primary production/Photosynthesis; Registration number of species; Replicates; Respiration; Respiration rate oxygen per chlorophyll a; Salinity; Salinity, standard deviation; Shikine; Single species; Site; Species; Species richness; Temperate; Temperature, water; Temperature, water, standard deviation; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 17717 data points
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2024-03-15
    Description: Plastics are accumulating in the world's oceans, while ocean waters are becoming acidified by increased CO2. We compared metagenome of biofilms on tethered plastic bottles in subtidal waters off Japan naturally enriched in CO2, compared to normal ambient CO2 levels. Extending from an earlier amplicon study of bacteria, we used metagenomics to provide direct insights into changes in the full range of functional genes and the entire taxonomic tree of life in the context of the changing plastisphere. We found changes in the taxonomic community composition of all branches of life. This included a large increase in diatom relative abundance across the treatments but a decrease in diatom diversity. Network complexity among families decreased with acidification, showing overall simplification of biofilm integration. With acidification, there was decreased prevalence of genes associated with cell–cell interactions and antibiotic resistance, decreased detoxification genes, and increased stress tolerance genes. There were few nutrient cycling gene changes, suggesting that the role of plastisphere biofilms in nutrient processes within an acidified ocean may not change greatly. Our results suggest that as ocean CO2 increases, the plastisphere will undergo broad-ranging changes in both functional and taxonomic composition, especially the ecologically important diatom group, with possible wider implications for ocean ecology.
    Keywords: Abundance; Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; EXP; Experiment; Family; Field observation; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Function; Functional diversity; Gene expression (incl. proteomics); North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Phylum; Salinity; Salinity, standard deviation; Sample ID; Shannon Diversity Index; Shikine_Island; Species; Taxa; Temperate; Temperature, water; Temperature, water, standard deviation; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 22824 data points
    Location Call Number Expected Availability
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  • 8
    Publication Date: 2024-03-15
    Description: Ocean acidification will likely change the structure and function of coastal marine ecosystems over coming decades. Volcanic carbon dioxide seeps generate dissolved CO2 and pH gradients that provide realistic insights into the direction and magnitude of these changes. Here, we used fish and benthic community surveys to assess the spatio-temporal dynamics of fish community properties off CO2 seeps in Japan. Adding to previous evidence from ocean acidification ecosystem studies conducted elsewhere, our findings documented shifts from calcified to non-calcified habitats with reduced benthic complexity. In addition, we found that such habitat transition led to decreased diversity of associated fish and to selection of those fish species better adapted to simplified ecosystems dominated by algae. Our data suggest that near-future projected ocean acidification levels will oppose the ongoing range expansion of coral reef-associated fish due to global warming.
    Keywords: Alkalinity, total; Aragonite saturation state; Benthos; Bicarbonate ion; Biotic Habitat Profile ratio; Biotic Habitat Profile ratio, standard deviation; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Canopy height; Canopy height, standard deviation; Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CO2 vent; Coast and continental shelf; Community composition and diversity; Coverage; Coverage, standard deviation; Entire community; EXP; Experiment; Field observation; Fish; Fish, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Location; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Potentiometric; Potentiometric titration; Replicates; Rocky-shore community; Salinity; Salinity, standard deviation; Season; Shikine; Site; Species richness; Species richness, standard deviation; Temperate; Temperature, water; Temperature, water, standard deviation; Transect; Type
    Type: Dataset
    Format: text/tab-separated-values, 892 data points
    Location Call Number Expected Availability
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  • 9
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    Unknown
    PANGAEA
    In:  Supplement to: Harvey, Ben P; Moore, Pippa J (2017): Ocean warming and acidification prevent compensatory response in a predator to reduced prey quality. Marine Ecology Progress Series, 563, 111-122, https://doi.org/10.3354/meps11956
    Publication Date: 2024-03-15
    Description: While there is increasing evidence for the impacts of climate change at the individual level, much less is known about how species' likely idiosyncratic responses may alter ecological interactions. Here, we demonstrate that ocean acidification and warming not only directly alter species' (individual) physiological performance, but also their predator-prey dynamics. Our results demonstrate that tissue production (used as a proxy for prey quality) in the barnacle Semibalanus balanoides was reduced under scenarios of future climate change, and hence their ability to support energy acquisition for dogwhelk Nucella lapillus through food provision was diminished. However, rather than increasing their feeding rates as a compensatory mechanism, consumption rates of N. lapillus were reduced to the point that they exhibited starvation (a loss of somatic tissue), despite prey resources remaining abundant. The resilience of any marine organism to stressors is fundamentally linked to their ability to obtain and assimilate energy. Therefore, our findings suggest that the cost of living under future climate change may surpass the energy intake from consumption rates, which is likely exacerbated through the bottom-up effects of reduced prey quality. If, as our results suggest, changes in trophic transfer of energy are more common in a warmer, high CO2 world, such alterations to the predator-prey dynamic may have negative consequences for the acquisition of energy in the predator and result in energetic trade-offs. Given the importance of predator-prey interactions in structuring marine communities, future climate change is likely to have major consequences for community composition and the structure and function of ecosystems.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Arthropoda; Behaviour; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Borth_OA; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2calc; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Carbon dioxide, standard deviation; Coast and continental shelf; EXP; Experiment; Experiment duration; Feeding rate, energy per mass; Feeding rate, number of prey per mass; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Growth rate; Ingestion efficiency; Laboratory experiment; Mass change; Mollusca; Mortality/Survival; North Atlantic; Nucella lapillus; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric; Potentiometric titration; Registration number of species; Replicate; Respiration; Respiration rate, oxygen; Salinity; Salinity, standard deviation; Semibalanus balanoides; Species; Species interaction; Survival; Temperate; Temperature; Temperature, standard deviation; Temperature, water; Tissue production; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 2670 data points
    Location Call Number Expected Availability
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  • 10
    Publication Date: 2024-03-15
    Description: The increasing quantity of plastic waste in the ocean is providing a growing and more widespread novel habitat for microbes. Plastics have taxonomically distinct microbial communities (termed the 'Plastisphere') and can raft these unique communities over great distances. In order to understand the Plastisphere properly it will be important to work out how major ocean changes (such as warming, acidification and deoxygenation) are shaping microbial communities on waste plastics in marine environments. Here, we show that common plastic drinking bottles rapidly become colonized by novel biofilm-forming bacterial communities, and that ocean acidification greatly influences the composition of plastic biofilm assemblages. We highlight the potential implications of this community shift in a coastal community exposed to enriched CO2 conditions.
    Keywords: Abundance; Alkalinity, total; Alkalinity, total, standard deviation; Alpha diversity; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Evenness of species; EXP; Experiment; Field observation; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Operational taxonomic unit; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Phylum; Potentiometric; Potentiometric titration; Salinity; Salinity, standard deviation; Shikine; Site; Substrate type; Temperate; Temperature, water; Temperature, water, standard deviation; Type
    Type: Dataset
    Format: text/tab-separated-values, 46968 data points
    Location Call Number Expected Availability
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