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  • Animals  (27,852)
  • Eddies
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  • 1
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    Spatial variability of movement, structure, and formation of Warm Core Rings in the Northwest Atlantic Slope Sea (2023)
    American Geophysical Union
    Details
    Publication Date: 2023-02-25
    Description: Author Posting. © American Geophysical Union, 2022. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 127(8),(2022): e2022JC018737, https://doi.org/10.1029/2022jc018737.
    Description: Gulf Stream Warm Core Rings (WCRs) have important influences on the New England Shelf and marine ecosystems. A 10-year (2011–2020) WCR dataset that tracks weekly WCR locations and surface areas is used here to identify the rings' path and characterize their movement between 55 and 75°W. The WCR dataset reveals a very narrow band between 66 and 71°W along which rings travel almost due west along ∼39°N across isobaths – the “Ring Corridor.” Then, west of the corridor, the mean path turns southwestward, paralleling the shelfbreak. The average ring translation speed along the mean path is 5.9 cm s−1. Long-lived rings (lifespan 〉150 days) tend to occupy the region west of the New England Seamount Chain (NESC) whereas short-lived rings (lifespan 〈150 days) tend to be more broadly distributed. WCR vertical structures, analyzed using available Argo float profiles indicate that rings that are formed to the west of the NESC have shallower thermoclines than those formed to the east. This tendency may be due to different WCR formation processes that are observed to occur along different sections of the Gulf Stream. WCRs formed to the east of the NESC tend to form from a pinch-off mechanism incorporating cores of Sargasso Sea water and a perimeter of Gulf Stream water. WCRs that form to the west of the NESC, form from a process called an aneurysm. WCRs formed through aneurysms comprise water mostly from the northern half of the Gulf Stream and are smaller than the classic pinch-off rings.
    Description: AS and AG are grateful for financial support from NOAA (NA11NOS0120038), NSF (OCE-1851242 and OCE-2123283), SMAST, and UMass Dartmouth. GG was supported by NSF under grant OCE-1657853. MA was supported by NSF under grant OCE-2122726 and by ONR under grant N00014-22-1-2112.
    Keywords: Gulf Stream ; Warm core rings ; Trajectories ; Eddies ; Aneurysm ; Ring formation
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Physical and biological processes at the Middle Atlantic Bight shelf-break front (2023)
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Details
    Publication Date: 2023-02-02
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2023.
    Description: The Middle Atlantic Bight (MAB) is a highly productive ecosystem, supporting several economically important commercial fisheries. Chlorophyll enhancement at the MAB shelf-break front has been observed only intermittently, despite numerous studies that suggest persistent upwelling at the front. High resolution cross-frontal transect crossings were collected from three two-week cruises in April 2018, May 2019, and July 2019. Chapter 2 focused on applying a novel method of classifying planktonic images taken by a Video Plankton Recorder to enable processing of the large volumes of data collected with the instrument. Chapter 3 investigated cross-frontal trends by temporally averaging in both Eulerian and frontally-aligned coordinates. For April 2018, transient chlorophyll enhancement was seen at the front in individual transects and within the frontally-aligned mean transect, but not within the Eulerian mean transect. The Eulerian mean for May 2019 showed chlorophyll enhancement as a result of frontal eddies, which were further explored in chapter 4. No frontal enhancement was observed in July 2019. The frontal eddies observed in May 2019 were simulated using an idealized model, which showed that upwelling occurred within both of the frontal eddies, despite having opposite rotational directions. This result was consistent with nutrient enhancement observed within the centers of both eddies. Biological enhancement within each eddy was observed, which may have been a result of advection from source waters and/or a local response to upwelled nutrients. The influence of frontal variability and frontal eddies on nutrients and plankton at the front argues for the necessity for 3-D models to fully explain frontal behavior and its effects on biological responses.
    Description: The research in this thesis was supported by the National Science Foundation (OCE-1657803) and the Dalio Foundation. Support from the WHOI Academic Programs Office is gratefully acknowledged.
    Keywords: Plankton ; Fronts ; Eddies
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Eddy vertical structure and variability: deepglider observations in the North Atlantic (2023)
    American Meteorological Society
    Details
    Publication Date: 2023-02-28
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(6), (2022): 1091–1110, https://doi.org/10.1175/JPO-D-21-0068.1.
    Description: Hundreds of full-depth temperature and salinity profiles collected by Deepglider autonomous underwater vehicles (AUVs) in the North Atlantic reveal robust signals in eddy isopycnal vertical displacement and horizontal current throughout the entire water column. In separate glider missions southeast of Bermuda, subsurface-intensified cold, fresh coherent vortices were observed with velocities exceeding 20 cm s−1 at depths greater than 1000 m. With vertical resolution on the order of 20 m or less, these full-depth glider slant profiles newly permit estimation of scaled vertical wavenumber spectra from the barotropic through the 40th baroclinic mode. Geostrophic turbulence theory predictions of spectral slopes associated with the forward enstrophy cascade and proportional to inverse wavenumber cubed generally agree with glider-derived quasi-universal spectra of potential and kinetic energy found at a variety of locations distinguished by a wide range of mean surface eddy kinetic energy. Water-column average spectral estimates merge at high vertical mode number to established descriptions of internal wave spectra. Among glider mission sites, geographic and seasonal variability implicate bottom drag as a mechanism for dissipation, but also the need for more persistent sampling of the deep ocean.
    Description: This work was funded by NSF Grant 1736217 and would not have been possible without the help of Kirk O’Donnell, James Bennett, Noel Pelland, and all contributors to Deepglider development. We additionally thank the captain crew of the R/V Atlantic Explorer and the BATS team at the Bermuda Institute of Ocean Sciences, particularly Rod Johnson, as well as Seakeepers International for their professionalism, capability, and generous assistance in deploying and recovering gliders.
    Keywords: North Atlantic Ocean ; Eddies ; Mesoscale processes ; Turbulence ; Energy transport ; In situ oceanic observations ; Oceanic variability
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  • 4
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    Calgary (2022)
    University of Calgary Press
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    Publication Date: 2022-07-19
    Description: How have our interactions with animals shaped Calgary? What can we do to ensure that humans and animals in the city continue to co-exist, and even flourish together? This wide-ranging book explores the ways that animals inhabit our city, our lives and our imaginations. Essays from animal historians, wildlife specialists, artists and writers address key issues such as human-wildlife interactions, livestock in the city, and animal performers at the Calgary Stampede. Contributions from some of Calgary's iconic arts institutions, including One Yellow Rabbit Performance Theatre, Decidedly Jazz Danceworks, and the Glenbow Museum, demonstrate how animals continue to be a source of inspiration and exploration for fashion, art, dance, and theatre. The full-colour volume is beautifully illustrated throughout with archival images, wildlife photography, documentary and production stills, and original artwork. Calgary: City of Animals is published in co-operation with the Calgary Institute for the Humanities.
    Keywords: Nature ; Animals ; bic Book Industry Communication::J Society & social sciences::JF Society & culture: general::JFF Social issues & processes::JFFZ Animals & society
    Language: English
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  • 5
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    Animal Metropolis (2022)
    University of Calgary Press
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    Publication Date: 2022-07-19
    Description: Animal Metropolis brings a Canadian perspective to the growing field of animal history, ranging across species and cities, from the beavers who engineered Stanley Park to the carthorses who shaped the city of Montreal. Some essays consider animals as spectacle: orca captivity in Vancouver, polar bear tourism in Churchill, Manitoba, fish on display in the Dominion Fisheries Museum, and the racialized memory of Jumbo the elephant in St. Thomas, Ontario. Others examine the bodily intimacies of shared urban spaces: the regulation of rabid dogs in Banff, the maternal politics of pure milk in Hamilton and the circulation of tetanus bacilli from horse to human in Toronto. Another considers the marginalization of women in Canada’s animal welfare movement. The authors collectively push forward from a historiography that features nonhuman animals as objects within human-centered inquiries to a historiography that considers the eclectic contacts, exchanges, and cohabitation of human and nonhuman animals. With contributions by: Kristoffer Archibald, Jason Colby, George Colpitts, Joanna Dean, Carla Hustak, Darcy Ingram, Sean Kheraj, William Knight, Sherry Olson, Rachel Poliquin, and Christabelle Sethna
    Keywords: Animals ; Anthropology ; Environmental Science ; History ; bic Book Industry Communication::J Society & social sciences::JH Sociology & anthropology::JHM Anthropology ; bic Book Industry Communication::H Humanities::HB History ; bic Book Industry Communication::K Economics, finance, business & management::KC Economics::KCN Environmental economics ; bic Book Industry Communication::J Society & social sciences::JF Society & culture: general::JFF Social issues & processes::JFFZ Animals & society
    Language: English
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  • 6
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    Sentient Ecologies (2022)
    Berghahn Books | Berghahn Books
    Details
    Publication Date: 2023-02-02
    Description: Employing methodological perspectives from the fields of political geography, environmental studies, anthropology, and their cognate disciplines, this volume explores alternative logics of sentient landscapes as racist, xenophobic, and right-wing. While the field of sentient landscapes has gained critical attention, the literature rarely seems to question the intentionality of sentient landscapes, which are often romanticized as pure, good, and just, and perceived as protectors of those who are powerless, indigenous, and colonized. The book takes a new stance on sentient landscapes with the intention of dispelling the denial of “coevalness” represented by their scholarly romanticization.
    Keywords: Social Science ; Sociology ; Rural ; Nature ; Animals ; Social Science ; Anthropology ; Cultural & Social ; bic Book Industry Communication::J Society & social sciences::JF Society & culture: general::JFS Social groups::JFSF Rural communities ; bic Book Industry Communication::W Lifestyle, sport & leisure::WN Natural history::WNC Wildlife: general interest ; bic Book Industry Communication::J Society & social sciences::JH Sociology & anthropology::JHM Anthropology::JHMC Social & cultural anthropology, ethnography
    Language: English
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  • 7
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    Revisiting the seasonal cycle of the Timor throughflow: impacts of winds, waves and eddies (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Peña‐Molino, B., Sloyan, B., Nikurashin, M., Richet, O., & Wijffels, S. Revisiting the seasonal cycle of the Timor throughflow: impacts of winds, waves and eddies. Journal of Geophysical Research: Oceans, 127, (2022): e2021JC018133, https://doi.org/10.1029/2021jc018133.
    Description: The tropical Pacific and Indian Oceans are connected via a complex system of currents known as the Indonesian Throughflow (ITF). More than 30% of the variability in the ITF is linked to the seasonal cycle, influenced by the Monsoon winds. Despite previous efforts, a detailed knowledge of the ITF response to the components of the seasonal forcing is still lacking. Here, we describe the seasonal cycle of the ITF based on new observations of velocity and properties in Timor Passage, satellite altimetry and a high-resolution regional model. These new observations reveal a complex mean and seasonally varying flow field. The amplitude of the seasonal cycle in volume transport is approximately 6 Sv. The timing of the seasonal cycle, with semi-annual maxima (minima) in May and December (February and September), is controlled by the flow below 600 m associated with semi-annual Kelvin waves. The transport of thermocline waters (〈300 m) is less variable than the deep flow but larger in magnitude. This top layer is modulated remotely by cycles of divergence in the Banda Sea, and locally through Ekman transport, coastal upwelling, and non-linearities of the flow. The latter manifests through the formation of eddies that reduce the throughflow during the Southeast Monsoon, when is expected to be maximum. While the reduction in transport associated with the eddies is small, its impact on heat transport is large. These non-linear dynamics develop over small scales (〈10 km), and without high enough resolution, both observations and models will fail to capture them adequately.
    Description: B. Peña-Molino, B. M. Sloyan, M. Nikurashin, and O. Richet were supported by the Centre for Southern Hemisphere Oceans Research (CSHOR). CSHOR is a joint research Centre for Southern Hemisphere Ocean Research between QNLM and CSIRO. S. E. Wijffels was supported by the US National Science Foundation Grant No. OCE-1851333.
    Keywords: Indonesian Throughflow ; Timor Passage ; Seasonal cycle ; Moorings ; Transport ; Eddies
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  • 8
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    Turbulent mixing variability in an energetic standing meander of the Southern Ocean (2022)
    American Meteorological Society
    Details
    Publication Date: 2022-08-29
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1593-1611, https://doi.org/10.1175/jpo-d-21-0180.1.
    Description: This study presents novel observational estimates of turbulent dissipation and mixing in a standing meander between the Southeast Indian Ridge and the Macquarie Ridge in the Southern Ocean. By applying a finescale parameterization on the temperature, salinity, and velocity profiles collected from Electromagnetic Autonomous Profiling Explorer (EM-APEX) floats in the upper 1600 m, we estimated the intensity and spatial distribution of dissipation rate and diapycnal mixing along the float tracks and investigated the sources. The indirect estimates indicate strong spatial and temporal variability of turbulent mixing varying from O(10−6) to O(10−3) m2 s−1 in the upper 1600 m. Elevated turbulent mixing is mostly associated with the Subantarctic Front (SAF) and mesoscale eddies. In the upper 500 m, enhanced mixing is associated with downward-propagating wind-generated near-inertial waves as well as the interaction between cyclonic eddies and upward-propagating internal waves. In the study region, the local topography does not play a role in turbulent mixing in the upper part of the water column, which has similar values in profiles over rough and smooth topography. However, both remotely generated internal tides and lee waves could contribute to the upward-propagating energy. Our results point strongly to the generation of turbulent mixing through the interaction of internal waves and the intense mesoscale eddy field.
    Description: The observations were funded through grants from the Australian Research Council Discovery Project (DP170102162) and Australia’s Marine National Facility. Surface drifters were provided by Dr. Shaun Dolk of the Global Drifter Program. AC was supported by an Australian Research Council Postdoctoral Fellowship. AC, HEP, and NLB acknowledge support from the Australian Government Department of the Environment and Energy National Environmental Science Program and the ARC Centre of Excellence in Climate Extremes. KP acknowledges the support from the National Science Foundation.
    Keywords: Diapycnal mixing ; Eddies ; Fronts ; Inertia-gravity waves ; Ocean dynamics
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  • 9
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    Kinetic energy transfers between mesoscale and submesoscale motions in the open ocean’s upper layers (2022)
    American Meteorological Society
    Details
    Publication Date: 2022-09-15
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(1),(2022): 75–97, https://doi.org/10.1175/JPO-D-21-0099.1.
    Description: Mesoscale eddies contain the bulk of the ocean’s kinetic energy (KE), but fundamental questions remain on the cross-scale KE transfers linking eddy generation and dissipation. The role of submesoscale flows represents the key point of discussion, with contrasting views of submesoscales as either a source or a sink of mesoscale KE. Here, the first observational assessment of the annual cycle of the KE transfer between mesoscale and submesoscale motions is performed in the upper layers of a typical open-ocean region. Although these diagnostics have marginal statistical significance and should be regarded cautiously, they are physically plausible and can provide a valuable benchmark for model evaluation. The cross-scale KE transfer exhibits two distinct stages, whereby submesoscales energize mesoscales in winter and drain mesoscales in spring. Despite this seasonal reversal, an inverse KE cascade operates throughout the year across much of the mesoscale range. Our results are not incompatible with recent modeling investigations that place the headwaters of the inverse KE cascade at the submesoscale, and that rationalize the seasonality of mesoscale KE as an inverse cascade-mediated response to the generation of submesoscales in winter. However, our findings may challenge those investigations by suggesting that, in spring, a downscale KE transfer could dampen the inverse KE cascade. An exploratory appraisal of the dynamics governing mesoscale–submesoscale KE exchanges suggests that the upscale KE transfer in winter is underpinned by mixed layer baroclinic instabilities, and that the downscale KE transfer in spring is associated with frontogenesis. Current submesoscale-permitting ocean models may substantially understate this downscale KE transfer, due to the models’ muted representation of frontogenesis.
    Description: The OSMOSIS experiment was funded by the U.K. Natural Environment Research Council (NERC) through Grants NE/1019999/1 and NE/101993X/1. ACNG acknowledges the support of the Royal Society and the Wolfson Foundation, and XY that of a China Scholarship Council PhD studentship.
    Keywords: Ageostrophic circulations ; Dynamics ; Eddies ; Energy transport ; Frontogenesis/frontolysis ; Instability ; Mesoscale processes ; Nonlinear dynamics ; Ocean circulation ; Ocean dynamics ; Small scale processes ; Turbulence
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  • 10
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    Seasonality of the mesoscale inverse cascade as inferred from global scale-dependent eddy energy observations (2022)
    American Meteorological Society
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    Publication Date: 2022-09-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 52(8), (2022): 1677-1691, https://doi.org/10.1175/jpo-d-21-0269.1.
    Description: Oceanic mesoscale motions including eddies, meanders, fronts, and filaments comprise a dominant fraction of oceanic kinetic energy and contribute to the redistribution of tracers in the ocean such as heat, salt, and nutrients. This reservoir of mesoscale energy is regulated by the conversion of potential energy and transfers of kinetic energy across spatial scales. Whether and under what circumstances mesoscale turbulence precipitates forward or inverse cascades, and the rates of these cascades, remain difficult to directly observe and quantify despite their impacts on physical and biological processes. Here we use global observations to investigate the seasonality of surface kinetic energy and upper-ocean potential energy. We apply spatial filters to along-track satellite measurements of sea surface height to diagnose surface eddy kinetic energy across 60–300-km scales. A geographic and scale-dependent seasonal cycle appears throughout much of the midlatitudes, with eddy kinetic energy at scales less than 60 km peaking 1–4 months before that at 60–300-km scales. Spatial patterns in this lag align with geographic regions where an Argo-derived estimate of the conversion of potential to kinetic energy is seasonally varying. In midlatitudes, the conversion rate peaks 0–2 months prior to kinetic energy at scales less than 60 km. The consistent geographic patterns between the seasonality of potential energy conversion and kinetic energy across spatial scale provide observational evidence for the inverse cascade and demonstrate that some component of it is seasonally modulated. Implications for mesoscale parameterizations and numerical modeling are discussed.
    Description: This work was generously funded by NSF Grants OCE-1912302, OCE-1912125 (Drushka), and OCE-1912325 (Abernathey) as part of the Ocean Energy and Eddy Transport Climate Process Team.
    Keywords: Eddies ; Energy transport ; Mesoscale processes ; Turbulence ; Oceanic mixed layer ; Altimetry ; Seasonal cycle
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  • 11
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    Iron depletion in the deep chlorophyll maximum: mesoscale eddies as natural iron fertilization experiments (2022)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hawco, N. J., Barone, B., Church, M. J., Babcock-Adams, L., Repeta, D. J., Wear, E. K., Foreman, R. K., Bjorkman, K. M., Bent, S., Van Mooy, B. A. S., Sheyn, U., DeLong, E. F., Acker, M., Kelly, R. L., Nelson, A., Ranieri, J., Clemente, T. M., Karl, D. M., & John, S. G. Iron depletion in the deep chlorophyll maximum: mesoscale eddies as natural iron fertilization experiments. Global Biogeochemical Cycles, 35(12), (2021): e2021GB007112, https://doi.org/10.1029/2021GB007112.
    Description: In stratified oligotrophic waters, phytoplankton communities forming the deep chlorophyll maximum (DCM) are isolated from atmospheric iron sources above and remineralized iron sources below. Reduced supply leads to a minimum in dissolved iron (dFe) near 100 m, but it is unclear if iron limits growth at the DCM. Here, we propose that natural iron addition events occur regularly with the passage of mesoscale eddies, which alter the supply of dFe and other nutrients relative to the availability of light, and can be used to test for iron limitation at the DCM. This framework is applied to two eddies sampled in the North Pacific Subtropical Gyre. Observations in an anticyclonic eddy center indicated downwelling of iron-rich surface waters, leading to increased dFe at the DCM but no increase in productivity. In contrast, uplift of isopycnals within a cyclonic eddy center increased supply of both nitrate and dFe to the DCM, and led to dominance of picoeukaryotic phytoplankton. Iron addition experiments did not increase productivity in either eddy, but significant enhancement of leucine incorporation in the light was observed in the cyclonic eddy, a potential indicator of iron stress among Prochlorococcus. Rapid cycling of siderophores and low dFe:nitrate uptake ratios also indicate that a portion of the microbial community was stressed by low iron. However, near-complete nitrate drawdown in this eddy, which represents an extreme case in nutrient supply compared to nearby Hawaii Ocean Time-series observations, suggests that recycling of dFe in oligotrophic ecosystems is sufficient to avoid iron limitation in the DCM under typical conditions.
    Description: The expedition and analyses were supported by the Simons Foundation SCOPE Grant 329108 to S. G. John, M. J. Church, D. J. Repeta, B. Van Mooy, E. F. DeLong, and D. M. Karl. N. J. Hawco was supported by a Simons Foundation Marine Microbial Ecology and Evolution postdoctoral fellowship (602538) and Simons Foundation grant 823167.
    Keywords: Chlorophyll ; Photosynthesis ; Iron limitation ; Oligotrophic ; Prochlorococcus ; Eddies
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  • 12
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    On characterizing ocean kinematics from surface drifters (2022)
    American Meteorological Society
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    Publication Date: 2023-02-01
    Description: Author Posting. © American Meteorological Society, 2022. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 39(8), (2022): 1183-1198, https://doi.org/10.1175/jtech-d-21-0068.1.
    Description: Horizontal kinematic properties, such as vorticity, divergence, and lateral strain rate, are estimated from drifter clusters using three approaches. At submesoscale horizontal length scales O(1–10)km, kinematic properties become as large as planetary vorticity f, but challenging to observe because they evolve on short time scales O(hourstodays). By simulating surface drifters in a model flow field, we quantify the sources of uncertainty in the kinematic property calculations due to the deformation of cluster shape. Uncertainties arise primarily due to (i) violation of the linear estimation methods and (ii) aliasing of unresolved scales. Systematic uncertainties (iii) due to GPS errors, are secondary but can become as large as (i) and (ii) when aspect ratios are small. Ideal cluster parameters (number of drifters, length scale, and aspect ratio) are determined and error functions estimated empirically and theoretically. The most robust method—a two-dimensional, linear least squares fit—is applied to the first few days of a drifter dataset from the Bay of Bengal. Application of the length scale and aspect-ratio criteria minimizes errors (i) and (ii), and reduces the total number of clusters and so computational cost. The drifter-estimated kinematic properties map out a cyclonic mesoscale eddy with a surface, submesoscale fronts at its perimeter. Our analyses suggest methodological guidance for computing the two-dimensional kinematic properties in submesoscale flows, given the recently increasing quantity and quality of drifter observations, while also highlighting challenges and limitations.
    Description: This research was supported by the Office of Naval Research (ONR) Departmental Research Initiative ASIRI under Grant N00014-13-1-0451 (SE and AM) and Grant N00014-13-1-0477 (VH and LC). The authors thank the captain and crew of the R/V Roger Revelle, and Andrew Lucas with the Multiscale Ocean Dynamics group at the Scripps Institution for Oceanography for providing the FastCTD data collected in 2015, which was supported by ONR Grant N00014-13-1-0489, as well as Eric D’Asaro for helpful discussions and Lance Braasch for assistance with the drifter dataset. AM and SE further thank NSF (Grant OCE-I434788) and ONR (Grant N00014-16-1-2470) for support. VH and LC were additionally supported by ONR Grants N00014-15-1-2286, N00014-14-1-0183, N00014-19-1-26-91 and NOAA Global Drifter Program (GDP) Grant NA15OAR4320071.
    Description: 2023-02-01
    Keywords: Indian Ocean ; Eddies ; Frontogenesis/frontolysis ; Fronts ; Lagrangian circulation/transport ; Ocean circulation ; Ocean dynamics
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  • 13
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    Multispezies-Ethnographie (2021)
    transcript Verlag | transcript Verlag
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    Publication Date: 2024-03-28
    Description: Wie werden Natur und Tiere durch die Multispezies-Ethnographie inklusiv in Forschungsprojekte integriert? Katharina Ameli fokussiert die inter- und multidisziplinäre Zusammenarbeit. Aus einer Untersuchung der Schnittstellen zwischen gesellschafts- und naturwissenschaftlich orientierten Fachdisziplinen ergibt sich eine komplexe Betrachtung von Natur, Mensch und Tier. Die Einblicke in Interdependenzen unterschiedlicher Fachdisziplinen verdeutlichen den Bedarf an einer Multispezies-Ethnographie zur Analyse von MenschenTiereNaturenKulturen.
    Keywords: Natur ; Mensch ; Tiere ; Naturverständnis ; Interdisziplinarität ; Qualitative Forschung ; Kultur ; Ethnographie ; Umwelt ; Tier ; Human-animal Studies ; Umweltsoziologie ; Kulturanthropologie ; Kultursoziologie ; Kulturwissenschaft ; Nature ; Human ; Animals ; Understanding of Nature ; Interdisciplinarity ; Qualitative Research ; Culture ; Ethnography ; Environment ; Animal ; Environmental Sociology ; Cultural Anthropology ; Sociology of Culture ; Cultural Studies ; thema EDItEUR::J Society and Social Sciences::JB Society and culture: general::JBF Social and ethical issues::JBFU Animals and society ; thema EDItEUR::R Earth Sciences, Geography, Environment, Planning::RN The environment::RNT Social impact of environmental issues ; thema EDItEUR::J Society and Social Sciences::JH Sociology and anthropology::JHM Anthropology::JHMC Social and cultural anthropology
    Language: German
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  • 14
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    Animals and Inequality in the Ancient World (2021)
    University Press of Colorado | University Press of Colorado
    Details
    Publication Date: 2024-04-02
    Description: Animals and Inequality in the Ancient World explores the current trends in the social archaeology of human-animal relationships, focusing on the ways in which animals are used to structure, create, support, and even deconstruct social inequalities. The authors provide a global range of case studies from both New and Old World archaeology—royal Aztec dog burial, the monumental horse tombs of Central Asia, and the ceremonial macaw cages of ancient Mexico among them. They explore the complex relationships between people and animals in social, economic, political, and ritual contexts, incorporating animal remains from archaeological sites with artifacts, texts, and iconography to develop their interpretations. Animals and Inequality in the Ancient World presents new data and interpretations that reveal the role of animals, their products, and their symbolism in structuring social inequalities in the ancient world. The volume will be of interest to archaeologists, especially zooarchaeologists, and classical scholars of pre-modern civilizations and societies.  Contributors: Alejandra Aguirre Molina, Benjamin S. Arbuckle, Levent Atici, Douglas V. Campana, Roderick Campbell, Ximena Chá­vez Balderas, Pam J. Crabtree, Susan D. deFrance, Kitty F. Emery, Abigail Holeman, H. Edwin Jackson, Leonardo López Lujá­n, Michael MacKinnon, Arkadiusz Marciniak, Sue Ann McCarty, Neil L. Norman, Gilberto Perez, Bernardo Rodriguez, William A. Saturno, Ashley E. Sharpe, Nawa Sugiyama, Charlotte K. Sunseri, Naomi Sykes, Fabiola Torres, Raul Valadez, Norma Valentin Maldonado, Adam S. Watson, Joshua Wright, Belem Zuniga-Arelleno
    Keywords: History ; Ancient ; Social Science ; Archaeology ; Nature ; Animals ; thema EDItEUR::N History and Archaeology::NH History::NHC Ancient history ; thema EDItEUR::N History and Archaeology::NK Archaeology ; thema EDItEUR::W Lifestyle, Hobbies and Leisure::WN Nature and the natural world: general interest::WNC Wildlife: general interest
    Language: English
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  • 15
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    Human and Animal Models for Translational Research on Neurodegeneration: Challenges and Opportunities From South America (2021)
    Frontiers Media SA
    Details
    Publication Date: 2024-04-05
    Description: Neurodegenerative diseases are the most frequent cause of dementia, representing a burden for public health systems (especially in middle and middle-high income countries). Although most research on this issue is concentrated in first-world centers, growing efforts in South America are affording important breakthroughs. This emerging agenda poses new challenges for the region but also new opportunities for the field. This book aims to integrate the community of experts across the globe and the region, and to establish new challenges and developments for future investigation. We present research focused on neurodegenerative research in South America. We introduce studies assessing the interplay among genetic, neural, and behavioral dimensions of these diseases, as well as articles on vulnerability factors, comparisons of findings from various countries, and works promoting multicenter and collaborative networking. More generally, our book covers a broad scope of human-research approaches (behavioral assessment, neuroimaging, electromagnetic techniques, brain connectivity, peripheral measures), animal methodologies (genetics, epigenetics, proteomics, metabolomics, other molecular biology tools), species (all human and non-human animals, sporadic, and genetic versions), and article types (original research, review, and opinion papers). Through this wide-ranging proposal, we hope to introduce a fresh approach to the challenges and opportunities of research on neurodegeneration in South America.
    Keywords: RC321-571 ; Q1-390 ; South America ; Multicenter research ; Neurodegenerative Diseases ; Neurosciences ; Public Health ; Animals ; Clinical Protocols ; Research ; Human Experimentation ; Dementia ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAN Neurosciences
    Language: English
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  • 16
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    Neuropharmacological, Neurobiological and Behavioral Mechanisms of Learning and Memory (2021)
    Frontiers Media SA
    Details
    Publication Date: 2024-04-04
    Description: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
    Keywords: drugs ; Behavior ; Memory tasks ; pre-clinical ; clinical ; Humans ; Animals ; thema EDItEUR::P Mathematics and Science::PD Science: general issues ; thema EDItEUR::M Medicine and Nursing::MK Medical specialties, branches of medicine::MKG Pharmacology
    Language: English
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  • 17
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    Potential vorticity dynamics of the arctic halocline (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(9), (2020): 2491-2506, doi:10.1175/JPO-D-20-0056.1.
    Description: An idealized two-layer shallow water model is applied to the study of the dynamics of the Arctic Ocean halocline. The model is forced by a surface stress distribution reflective of the observed wind stress pattern and ice motion and by an inflow representing the flow of Pacific Water through Bering Strait. The model reproduces the main elements of the halocline circulation: an anticyclonic Beaufort Gyre in the western basin (representing the Canada Basin), a cyclonic circulation in the eastern basin (representing the Eurasian Basin), and a Transpolar Drift between the two gyres directed from the upwind side of the basin to the downwind side of the basin. Analysis of the potential vorticity budget shows a basin-averaged balance primarily between potential vorticity input at the surface and dissipation at the lateral boundaries. However, advection is a leading-order term not only within the anticyclonic and cyclonic gyres but also between the gyres. This means that the eastern and western basins are dynamically connected through the advection of potential vorticity. Both eddy and mean fluxes play a role in connecting the regions of potential vorticity input at the surface with the opposite gyre and with the viscous boundary layers. These conclusions are based on a series of model runs in which forcing, topography, straits, and the Coriolis parameter were varied.
    Description: This study was supported by National Science Foundation Grant OPP-1822334. Comments and suggestions from two anonymous referees greatly helped to improve the paper.
    Description: 2021-02-17
    Keywords: Eddies ; Ekman pumping/transport ; Ocean circulation ; Ocean dynamics ; Potential vorticity ; Shallow-water equations
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  • 18
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    Structure, variability, and dynamics of the West Greenland Boundary Current System (2021)
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-10-20
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2022.
    Description: The ventilation of intermediate waters in the Labrador Sea has important implications for the strength of the Atlantic Meridional Overturning Circulation. Boundary current-interior interactions regulate the exchange of properties between the slope and the basin, which in turn regulates the magnitude of interior convection and the export of ventilated waters from the subpolar gyre. This thesis characterizes theWest Greenland Boundary Current System near Cape Farewell across a range of spatio-temporal scales. The boundary current system is composed of three velocity cores: (1) the West Greenland Coastal Current (WGCC), transporting Greenland and Arctic meltwaters on the shelf; (2) the West Greenland Current (WGC), which advects warm, saline Atlantic-origin water at depth, meltwaters at the surface, and newly-ventilated Labrador Sea Water (LSW); and (3) the Deep Western Boundary Current, which carries dense overflow waters ventilated in the Nordic Seas. The seasonal presence of the LSW and Atlantic-origin water are dictated by air-sea buoyancy forcing, while the seasonality of the WGCC is governed by remote wind forcing and the propagation of coastally trapped waves from East Greenland. Using mooring data and hydrographic surveys, we demonstrate mid-depth intensified cyclones generated at Denmark Strait are found offshore of the WGC and enhance the overflow water transport at synoptic timescales. Using mooring, hydrographic, and satellite data, we demonstrate that the WGC undergoes extensive meandering due to baroclinic instability that is enhanced in winter due to LSW formation adjacent to the current. This leads to the production of small-scale, anticyclonic eddies that can account for the entirety of wintertime heat loss within the Labrador Sea. The meanders are shown to trigger the formation of Irminger Rings downstream. Using mooring, hydrographic, atmospheric, and Lagrangian data, and a mixing model, we find that strong atmospheric storms known as forward tip jets cause upwelling at the shelfbreak that triggers offshore export of freshwater. This freshwater flux can explain the observed lack of ventilation in the eastern Labrador Sea. Together, this thesis documents previously unobserved interannual, seasonal, and synoptic-scale variability and dynamics within the West Greenland boundary current system that must be accounted for in future modeling.
    Description: The work in this dissertation was funded by the National Science Foundation grants OCE-1259618 and OCE-1756361.
    Keywords: Boundary current dynamics ; Labrador sea water formation ; Eddies
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  • 19
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    Modeled three-dimensional currents and eddies on an alongshore-variable barred beach (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 126(7), (2021): e2020JC016899, https://doi.org/10.1029/2020JC016899.
    Description: Circulation in the nearshore region, which is critical for material transport along the coast and between the surf zone and the inner shelf, includes strong vortical motions. The horizontal length scales and vertical structure associated with vortical motions are not well documented on alongshore-variable beaches. Here, a three-dimensional phase-resolving numerical model, Simulating WAves till SHore (SWASH), is compared with surfzone waves and flows on a barred beach, and is used to investigate surfzone eddies. Model simulations with measured bathymetry reproduce trends in the mean surfzone circulation patterns, including alongshore currents and rip current circulation cells observed for offshore wave heights from 0.5 to 2.0 m and incident wave directions from 0 to 15° relative to shore normal. The length scales of simulated eddies, quantified using the alongshore wavenumber spectra of vertical vorticity, suggest that increasing wave directional spread intensifies small-scale eddies ( (10) m). Simulations with bathymetric variability ranging from alongshore uniform to highly alongshore variable indicate that large-scale eddies ( (100) m) may be enhanced by surfzone bathymetric variability, whereas small-scale eddies ( (10) m) are less dependent on bathymetric variability. The simulated vertical dependence of the magnitude and mean length scale (centroid) of the alongshore wavenumber spectra of vertical vorticity and very low-frequency (f ≈ 0.005 Hz) currents is weak in the outer surf zone, and decreases toward the shoreline. The vertical dependence in the simulations may be affected by the vertical structure of turbulence, mean shear, and bottom boundary layer dynamics.
    Description: Support was provided by the University of Washington Royalty Research Fund, the National Science Foundation, the Office of Naval Research, a National Defense Science and Engineering Graduate Fellowship, a Vannevar Bush Faculty Fellowship, the United States Army Corps of Engineers, the United States Coastal Research Program, Sea Grant, and the WHOI Investment in Science Program.
    Description: 2021-12-26
    Keywords: Surf zone ; Eddies ; Circulation ; Vorticity ; Wave breaking ; Modeling
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  • 20
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    The dynamical structure of a warm core ring as I\inferred from glider observations and along-track altimetry (2021)
    MDPI
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Meunier, T., Pallas Sanz, E., de Marez, C., Perez, J., Tenreiro, M., Ruiz Angulo, A., & Bower, A. The dynamical structure of a warm core ring as I\inferred from glider observations and along-track altimetry. Remote Sensing, 13(13), (2021): 2456, https://doi.org/10.3390/rs13132456.
    Description: This study investigates the vertical structure of the dynamical properties of a warm-core ring in the Gulf of Mexico (Loop Current ring) using glider observations. We introduce a new method to correct the glider’s along-track coordinate, which is, in general, biased by the unsteady relative movements of the glider and the eddy, yielding large errors on horizontal derivatives. Here, we take advantage of the synopticity of satellite along-track altimetry to apply corrections on the glider’s position by matching in situ steric height with satellite-measured sea surface height. This relocation method allows recovering the eddy’s azimuthal symmetry, precisely estimating the rotation axis position, and computing reliable horizontal derivatives. It is shown to be particularly appropriate to compute the eddy’s cyclo-geostrophic velocity, relative vorticity, and shear strain, which are otherwise out of reach when using the glider’s raw traveled distance as a horizontal coordinate. The Ertel potential vorticity (PV) structure of the warm core ring is studied in details, and we show that the PV anomaly is entirely controlled by vortex stretching. Sign reversal of the PV gradient across the water column suggests that the ring might be baroclinically unstable. The PV gradient is also largely controlled by gradients of the vortex stretching term. We also show that the ring’s total energy partition is strongly skewed, with available potential energy being 3 times larger than kinetic energy. The possible impact of this energy partition on the Loop Current rings longevity is also discussed.
    Description: This research was funded by a grant of the National Council of Science and Technology of Mexico—Secretariat of Energy Hydrocarbons Trust, project 201441. This is a contribution of the Gulf of Mexico Research Consortium (CIGoM).
    Keywords: Gliders ; Altimetry ; Mesoscale ; Eddies ; Warm-core rings ; Potential vorticity ; Gulf of Mexico
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  • 21
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    On the predictability of sea surface height around Palau (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(11), (2020): 3267–3294, https://doi.org/10.1175/JPO-D-19-0310.1.
    Description: As part of the Flow Encountering Abrupt Topography (FLEAT) program, an array of pressure-sensor equipped inverted echo sounders (PIESs) was deployed north of Palau where the westward-flowing North Equatorial Current encounters the southern end of the Kyushu–Palau Ridge in the tropical North Pacific. Capitalizing on concurrent observations from satellite altimetry, FLEAT Spray gliders, and shipboard hydrography, the PIESs’ 10-month duration hourly bottom pressure p and round-trip acoustic travel time τ records are used to examine the magnitude and predictability of sea level and pycnocline depth changes and to track signal propagations through the array. Sea level and pycnocline depth are found to vary in response to a range of ocean processes, with their magnitude and predictability strongly process dependent. Signals characterized here comprise the barotropic tides, semidiurnal and diurnal internal tides, southeastward-propagating superinertial waves, westward-propagating mesoscale eddies, and a strong signature of sea level increase and pycnocline deepening associated with the region’s relaxation from El Niño to La Niña conditions. The presence of a broad band of superinertial waves just above the inertial frequency was unexpected and the FLEAT observations and output from a numerical model suggest that these waves detected near Palau are forced by remote winds east of the Philippines. The PIES-based estimates of pycnocline displacement are found to have large uncertainties relative to overall variability in pycnocline depth, as localized deep current variations arising from interactions of the large-scale currents with the abrupt topography around Palau have significant travel time variability.
    Description: Support for this research was provided by Office of Naval Research Grants N00014-16-1-2668, N00014-18-1-2406, N00014-15-1-2488, and N00014-15-1-2622. R.C.M. was additionally supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Weston Howland Jr. Postdoctoral Scholarship.
    Keywords: Tropics ; Currents ; Eddies ; ENSO ; Internal waves ; Mesoscale processes
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  • 22
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    Warm spiral streamers over Gulf Stream warm-core rings (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(11),(2020): 3331–3351, https://doi.org/10.1175/JPO-D-20-0035.1.
    Description: This study examines the generation of warm spiral structures (referred to as spiral streamers here) over Gulf Stream warm-core rings. Satellite sea surface temperature imagery shows spiral streamers forming after warmer water from the Gulf Stream or newly formed warm-core rings impinges onto old warm-core rings and then intrudes into the old rings. Field measurements in April 2018 capture the vertical structure of a warm spiral streamer as a shallow lens of low-density water winding over an old ring. Observations also show subduction on both sides of the spiral streamer, which carries surface waters downward. Idealized numerical model simulations initialized with observed water-mass densities reproduce spiral streamers over warm-core rings and reveal that their formation is a nonlinear submesoscale process forced by mesoscale dynamics. The negative density anomaly of the intruding water causes a density front at the interface between the intruding water and surface ring water, which, through thermal wind balance, drives a local anticyclonic flow. The pressure gradient and momentum advection of the local interfacial flow push the intruding water toward the ring center. The large-scale anticyclonic flow of the ring and the radial motion of the intruding water together form the spiral streamer. The observed subduction on both sides of the spiral streamer is part of the secondary cross-streamer circulation resulting from frontogenesis on the stretching streamer edges. The surface divergence of the secondary circulation pushes the side edges of the streamer away from each other, widens the warm spiral on the surface, and thus enhances its surface signal.
    Description: Authors W. G. Zhang and D. J. McGillicuddy are both supported by the National Science Foundation through Grant OCE 1657803.
    Keywords: Buoyancy ; Eddies ; Frontogenesis/frontolysis ; Mesoscale processes ; Transport ; Vertical motion
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  • 23
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    Cyclonic Eddies in the West Greenland Boundary Current System (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(7), (2021): 2087–2102, https://doi.org/10.1175/JPO-D-20-0255.1.
    Description: The boundary current system in the Labrador Sea plays an integral role in modulating convection in the interior basin. Four years of mooring data from the eastern Labrador Sea reveal persistent mesoscale variability in the West Greenland boundary current. Between 2014 and 2018, 197 middepth intensified cyclones were identified that passed the array near the 2000-m isobath. In this study, we quantify these features and show that they are the downstream manifestation of Denmark Strait Overflow Water (DSOW) cyclones. A composite cyclone is constructed revealing an average radius of 9 km, maximum azimuthal speed of 24 cm s−1, and a core propagation velocity of 27 cm s−1. The core propagation velocity is significantly smaller than upstream near Denmark Strait, allowing them to trap more water. The cyclones transport a 200-m-thick lens of dense water at the bottom of the water column and increase the transport of DSOW in the West Greenland boundary current by 17% relative to the background flow. Only a portion of the features generated at Denmark Strait make it to the Labrador Sea, implying that the remainder are shed into the interior Irminger Sea, are retroflected at Cape Farewell, or dissipate. A synoptic shipboard survey east of Cape Farewell, conducted in summer 2020, captured two of these features that shed further light on their structure and timing. This is the first time DSOW cyclones have been observed in the Labrador Sea—a discovery that could have important implications for interior stratification.
    Description: A. P. and R. S. P. were funded by National Science Foundation Grants OCE-1259618 and OCE-1756361. I. L. B. and F. S. were funded by National Science Foundation Grants OCE-1258823 and OCE-1756272. N. P. H. was supported by the Natural Environment Research Council U.K. OSNAP program (NE/K010875/1 and NE/K010700/1). M. A. S. was supported by NSF Grants OCE-1558742 and OPP-1822334.
    Description: 2021-12-08
    Keywords: Boundary currents ; Eddies ; Transport
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  • 24
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    Field evidence of inverse energy cascades in the surfzone (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(8),(2020): 2315-2321, doi:10.1175/JPO-D-19-0327.1.
    Description: Low-frequency currents and eddies transport sediment, pathogens, larvae, and heat along the coast and between the shoreline and deeper water. Here, low-frequency currents (between 0.1 and 4.0 mHz) observed in shallow surfzone waters for 120 days during a wide range of wave conditions are compared with theories for generation by instabilities of alongshore currents, by ocean-wave-induced sea surface modulations, and by a nonlinear transfer of energy from breaking waves to low-frequency motions via a two-dimensional inverse energy cascade. For these data, the low-frequency currents are not strongly correlated with shear of the alongshore current, with the strength of the alongshore current, or with wave-group statistics. In contrast, on many occasions, the low-frequency currents are consistent with an inverse energy cascade from breaking waves. The energy of the low-frequency surfzone currents increases with the directional spread of the wave field, consistent with vorticity injection by short-crested breaking waves, and structure functions increase with spatial lags, consistent with a cascade of energy from few-meter-scale vortices to larger-scale motions. These results include the first field evidence for the inverse energy cascade in the surfzone and suggest that breaking waves and nonlinear energy transfers should be considered when estimating nearshore transport processes across and along the coast.
    Description: Funding was provided by a Vannevar Bush Faculty Fellowship [from OUSD(R&E)] and NSF.
    Keywords: Ocean ; Coastlines ; Eddies ; Wave breaking
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  • 25
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    Observed eddy-internal wave interactions in the Southern Ocean (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cusack, J. M., Brearley, J. A., Garabato, A. C. N., Smeed, D. A., Polzin, K. L., Velzeboer, N., & Shakespeare, C. J. Observed eddy-internal wave interactions in the Southern Ocean. Journal of Physical Oceanography, 50(10), (2020): 3042-3062, doi:10.1175/JPO-D-20-0001.1.
    Description: The physical mechanisms that remove energy from the Southern Ocean’s vigorous mesoscale eddy field are not well understood. One proposed mechanism is direct energy transfer to the internal wave field in the ocean interior, via eddy-induced straining and shearing of preexisting internal waves. The magnitude, vertical structure, and temporal variability of the rate of energy transfer between eddies and internal waves is quantified from a 14-month deployment of a mooring cluster in the Scotia Sea. Velocity and buoyancy observations are decomposed into wave and eddy components, and the energy transfer is estimated using the Reynolds-averaged energy equation. We find that eddies gain energy from the internal wave field at a rate of −2.2 ± 0.6 mW m−2, integrated from the bottom to 566 m below the surface. This result can be decomposed into a positive (eddy to wave) component, equal to 0.2 ± 0.1 mW m−2, driven by horizontal straining of internal waves, and a negative (wave to eddy) component, equal to −2.5 ± 0.6 mW m−2, driven by vertical shearing of the wave spectrum. Temporal variability of the transfer rate is much greater than the mean value. Close to topography, large energy transfers are associated with low-frequency buoyancy fluxes, the underpinning physics of which do not conform to linear wave dynamics and are thereby in need of further research. Our work suggests that eddy–internal wave interactions may play a significant role in the energy balance of the Southern Ocean mesoscale eddy and internal wave fields.
    Description: Funding for DIMES was provided by U.K. Natural Environment Research Council (NERC) Grants NE/E007058/1 and NE/E005667/1. JMC acknowledges the support of a NERC PhD studentship, and ACNG that of the Royal Society and the Wolfson Foundation. NV acknowledges support from the ARC Centre of Excellence for Climate Extremes (CLEX) Honours Scholarship and the ANU PBSA Partnership - Spotless Scholarship. CJS acknowledges support from an ARC Discovery Early Career Researcher Award DE180100087 and an Australian National University Futures Scheme award. Numerical simulations were conducted on the National Computational Infrastructure (NCI) facility, Canberra, Australia. This study has been conducted using E.U. Copernicus Marine Service Information. We thank two anonymous reviewers for their comments which helped to improve the manuscript significantly. Codes and output files are available online at the project repository (https://github.com/jessecusack/DIMES_eddy_wave_interactions).
    Keywords: Southern Ocean ; Eddies ; Internal waves ; Turbulence
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  • 26
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    The influence of an eddy in the success rates and distributions of passively advected or actively swimming biological organisms crossing the continental slope (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(7), (2020): 1839-1852, https://doi.org/10.1175/JPO-D-19-0209.1.
    Description: The Lagrangian characteristics of the surface flow field arising when an idealized, anticyclonic, mesoscale, isolated deep-ocean eddy collides with continental slope and shelf topography are explored. In addition to fluid parcel trajectories, we consider the trajectories of biological organisms that are able to navigate and swim, and for which shallow water is a destination. Of particular interest is the movement of organisms initially located in the offshore eddy, the manner in which the eddy influences the ability of the organisms to reach the shelf break, and the spatial and temporal distributions of organisms that do so. For nonswimmers or very slow swimmers, the organisms arrive at the shelf break in distinct pulses, with different pulses occurring at different locations along the shelf break. This phenomenon is closely related to the episodic formation of trailing vortices that are formed after the eddy collides with the continental slope, turns, and travels parallel to the coast. Analysis based on finite-time Lyapunov exponents reveals initial locations of all successful trajectories reaching the shoreline, and provides maps of the transport pathways showing that much of the cross-shelf-break transport occurs in the lee of the eddy as it moves parallel to the shore. The same analysis shows that the onshore transport is interrupted after a trailing vortex detaches. As the swimming speeds are increased, the organisms are influenced less by the eddy and tend to show up en mass and in a single pulse.
    Description: IR and LP were supported by National Science Foundation (NSF) Grant OCE-1558806. DC was supported by NSF U.S. National Science Foundation’s Physical Oceanography program through Grants OCE-1059632 and OCE-1433953 as well as the Academic Programs Office, Woods Hole Oceanographic Institution. We acknowledge high-performance computing support from Yellowstone (http://n2t.net/ark:/85065/d7wd3xhc) provided by NCAR’s Computational and Information Systems Laboratory, sponsored by the National Science Foundation.
    Keywords: Ocean ; Eddies ; Nonlinear dynamics ; Transport
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    An idealized modeling study of the midlatitude variability of the wind-driven meridional overturning circulation (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 51(8),(2021): 2425–2441, https://doi.org/10.1175/JPO-D-20-0317.1.
    Description: The frequency and latitudinal dependence of the midlatitude wind-driven meridional overturning circulation (MOC) is studied using theory and linear and nonlinear applications of a quasigeostrophic numerical model. Wind forcing is varied either by changing the strength of the wind or by shifting the meridional location of the wind stress curl pattern. At forcing periods of less than the first-mode baroclinic Rossby wave basin crossing time scale, the linear response in the middepth and deep ocean is in phase and opposite to the Ekman transport. For forcing periods that are close to the Rossby wave basin crossing time scale, the upper and deep MOC are enhanced, and the middepth MOC becomes phase shifted, relative to the Ekman transport. At longer forcing periods the deep MOC weakens and the middepth MOC increases, but eventually for long enough forcing periods (decadal) the entire wind-driven MOC spins down. Nonlinearities and mesoscale eddies are found to be important in two ways. First, baroclinic instability causes the middepth MOC to weaken, lose correlation with the Ekman transport, and lose correlation with the MOC in the opposite gyre. Second, eddy thickness fluxes extend the MOC beyond the latitudes of direct wind forcing. These results are consistent with several recent studies describing the four-dimensional structure of the MOC in the North Atlantic Ocean.
    Description: This study was supported by National Science Foundation Grant OCE-1947290.
    Description: 2022-01-13
    Keywords: Eddies ; Large-scale motions ; Meridional overturning circulation ; Ocean dynamics ; Planetary waves
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    On the vertical velocity and nutrient delivery in warm core rings (2021)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(6), (2020): 1557-1582, doi:10.1175/JPO-D-19-0239.1.
    Description: We examine various contributions to the vertical velocity field within large mesoscale eddies by analyzing multiple solutions to an idealized numerical model of a representative anticyclonic warm core Gulf Stream ring. Initial conditions are constructed to reproduce the observed density and nutrient profiles collected during the Warm Core Rings Program. The contributions to vertical fluxes diagnosed from the numerical simulations are compared against a divergence-based, semidiagnostic equation and a generalized omega equation to better understand the dynamics of the vertical velocity field. Frictional decay alone is found to be ineffective in raising isopycnals and transporting nutrients to the upper ocean. With representative wind forcing, the magnitude of vorticity gradient–induced Ekman pumping is not necessarily larger than the current-induced counterpart on a time scale relevant to ecosystem response. Under realistic forcing conditions, strain deformation can perturb the ring to be noncircular and induce vertical velocities much larger than the Ekman vertical velocities. Nutrient budget diagnosis, together with analysis of the relative magnitudes of the various types of vertical fluxes, allows us to describe the time-scale dependence of nutrient delivery. At time scales that are relevant to individual phytoplankton (from hours to days), the magnitudes of nutrient flux by Ekman velocities and deformation-induced velocities are comparable. Over the life span of a typical warm core ring, which can span multiple seasons, surface current–induced Ekman pumping is the most effective mechanism in upper-ocean nutrient enrichment because of its persistence in the center of anticyclones regardless of the direction of the wind forcing.
    Description: This work was supported by the National Science Foundation Ocean Science Division under Grant OCE-1558960. PG also acknowledges support of the NASA Physical Oceanography Program Grant NNX16H59G. KC would like to thank D. McGillicuddy Jr. for inspiring discussions and suggestions during the course of this study. Constructive comments from two anonymous reviewers are appreciated.
    Keywords: Ageostrophic circulations ; Eddies ; Ekman pumping/transport ; Mesoscale processes ; Upwelling/downwelling ; Vertical motion
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    Assessment of numerical simulations of deep circulation and variability in the Gulf of Mexico using recent observations (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(4), (2020): 1045-1064, doi:10.1175/JPO-D-19-0137.1.
    Description: Three simulations of the circulation in the Gulf of Mexico (the “Gulf”) using different numerical general circulation models are compared with results of recent large-scale observational campaigns conducted throughout the deep (〉1500 m) Gulf. Analyses of these observations have provided new understanding of large-scale mean circulation features and variability throughout the deep Gulf. Important features include cyclonic flow along the continental slope, deep cyclonic circulation in the western Gulf, a counterrotating pair of cells under the Loop Current region, and a cyclonic cell to the south of this pair. These dominant circulation features are represented in each of the ocean model simulations, although with some obvious differences. A striking difference between all the models and the observations is that the simulated deep eddy kinetic energy under the Loop Current region is generally less than one-half of that computed from observations. A multidecadal integration of one of these numerical simulations is used to evaluate the uncertainty of estimates of velocity statistics in the deep Gulf computed from limited-length (4 years) observational or model records. This analysis shows that the main deep circulation features identified from the observational studies appear to be robust and are not substantially impacted by variability on time scales longer than the observational records. Differences in strengths and structures of the circulation features are identified, however, and quantified through standard error analysis of the statistical estimates using the model solutions.
    Description: This work was supported by the Gulf Research Program of the National Academy of Sciences under Awards 2000006422 and 2000009966. The content is solely the responsibility of the authors and does not necessarily represent the official views of the Gulf Research Program or the National Academy of Sciences. The authors acknowledge the GLORYS project for providing the ocean reanalysis data used in the ROMS simulation. GLORYS is jointly conducted by MERCATOR OCEAN, CORIOLIS, and CNRS/INSU. Installation, recovery, data acquisition, and processing of the CANEK group current-meter moorings were possible because of CICESE-PetróleosMexicanos Grant PEP-CICESE 428229851 and the dedicated work of the crew of the B/O Justo Sierra and scientists of the CANEK group. The authors thank Dr. Aljaz Maslo, CICESE, for assistance with analysis of model data. The Bureau of Ocean Energy Management (BOEM), U.S. Dept. of the Interior, provided funding for the Lagrangian Study of the Deep Circulation in the Gulf of Mexico and the Observations and Dynamics of the Loop Current study. HYCOM simulation data are available from the HYCOM data server (https://www.hycom.org/data/goml0pt04/expt-02pt2), MITgcm data are available from the ECCO data server (http://ecco.ucsd.edu/gom_results2.html), and the ROMS simulation data are available from GRIIDC (NA.x837.000:0001).
    Keywords: Ocean circulation ; Abyssal circulation ; Bottom currents/bottom water ; Eddies ; Ocean models
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    The contrasting dynamics of the buoyancy-forced Lofoten and Greenland Basins (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(5),(2020): 1227-1244, doi:10.1175/JPO-D-19-0280.1.
    Description: The Nordic seas are commonly described as a single basin to investigate their dynamics and sensitivity to environmental changes when using a theoretical framework. Here, we introduce a conceptual model for a two-basin marginal sea that better represents the Nordic seas geometry. In our conceptual model, the marginal sea is characterized by both a cyclonic boundary current and a front current as a result of different hydrographic properties east and west of the midocean ridge. The theory is compared to idealized model simulations and shows good agreement over a wide range of parameter settings, indicating that the physics in the two-basin marginal sea is well captured by the conceptual model. The balances between the atmospheric buoyancy forcing and the lateral eddy heat fluxes from the boundary current and the front current differ between the Lofoten and the Greenland Basins, since the Lofoten Basin is more strongly eddy dominated. Results show that this asymmetric sensitivity leads to opposing responses depending on the strength of the atmospheric buoyancy forcing. Additionally, the front current plays an essential role for the heat and volume budget of the two basins, by providing an additional pathway for heat toward the interior of both basins via lateral eddy heat fluxes. The variability of the temperature difference between east and west influences the strength of the different flow branches through the marginal sea and provides a dynamical explanation for the observed correlation between the front current and the slope current of the Norwegian Atlantic Current in the Nordic seas.
    Description: We thank Ilker Fer and two anonymous reviewers whose comments improved this paper. S. L. Ypma and S. Georgiou were supported by NWO (Netherlands Organisation for Scientific Research) VIDI Grant 864.13.011 awarded to C. A. Katsman. M. A. Spall was supported by National Science Foundation Grants OCE-1558742 and OPP-1822334. E. Lambert is funded by the ERA4CS project INSeaPTION. The model data analyzed in this study are available on request from the corresponding author. This study has been conducted using E.U. Copernicus Marine Service Information. The altimeter products were produced by Ssalto/Duacs and distributed by Aviso+, with support from CNES (https://www.aviso.altimetry.fr).
    Description: 2020-10-27
    Keywords: Boundary currents ; Deep convection ; Eddies ; Fronts ; Instability ; Meridional overturning circulation
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    Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017 (2020)
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Details
    Publication Date: 2022-05-26
    Description: Dataset: Warm Core Ring Census (1980-2017)
    Description: Yearly census of Gulf Stream Warm Core Ring formation from 1980 to 2017. This continuous census file contains the formation and demise times and locations, and the area at formation for all 961 WCRs formed between 1980 and 2017 that lived for a week or more. Each row represents a unique Warm Core Ring and is identified by a unique alphanumeric code 'WEyyyymmddA', where 'WE' represents a Warm Eddy (as identified in the analysis charts); 'yyyymmdd' is the year, month and day of formation; and the last character 'A' represents the sequential sighting of the eddies in a particular year. For example, the first ring in 2017 having a trailing alphabet of 'E' indicates that four rings were carried over from 2016 which are still observed on January 1, 2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/810182
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-0815679, NSF Division of Ocean Sciences (NSF OCE) OCE-1657853, National Oceanic and Atmospheric Administration (NOAA) NOAA-NA11NOS0120038
    Keywords: Gulf Stream ; Warm Core Rings ; Census ; Eddies ; Slope Sea ; North Atlantic ; Shelf-Slope Interactions
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    Role of residual overturning for the sensitivity of Southern Ocean isopycnal slopes to changes in wind forcing (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(11), (2019): 2867-2881, doi: 10.1175/JPO-D-19-0072.1.
    Description: The Antarctic Circumpolar Current plays a central role in the ventilation of heat and carbon in the global ocean. In particular, the isopycnal slopes determine where each water mass outcrops and thus how the ocean interacts with the atmosphere. The region-integrated isopycnal slopes have been suggested to be eddy saturated, that is, stay relatively constant as the wind forcing changes, but whether or not the flow is saturated in realistic present day and future parameter regimes is unknown. This study analyzes an idealized two-layer quasigeostrophic channel model forced by a wind stress and a residual overturning generated by a mass flux across the interface between the two layers, with and without a blocking ridge. The sign and strength of the residual overturning set which way the isopycnal slopes change with the wind forcing, leading to an increase in slope with an increase in wind forcing for a positive overturning and a decrease in slope for a negative overturning, following the usual conventions; this behavior is caused by the dominant standing meander weakening as the wind stress weakens causing the isopycnal slopes to become more sensitive to changes in the wind stress and converge with the slopes of a flat-bottomed simulation. Eddy saturation only appears once the wind forcing passes a critical level. These results show that theories for saturation must have both topography and residual overturning in order to be complete and provide a framework for understanding how the isopycnal slopes in the Southern Ocean may change in response to future changes in wind forcing.
    Description: MKY and RF acknowledge support through NSF Awards OCE-1536515 and AGS-1835576. MKY acknowledges funding from NDSEG. GRF was supported by NSF OCE-1459702. We are very grateful for conversations with David Marshall, Andrew Stewart, and two anonymous reviewers that greatly improved the manuscript. The code for running the model is found at https://github.com/mkyoungs/JPO-QG-Channel.
    Description: 2020-04-30
    Keywords: Southern Ocean ; Eddies ; Storm tracks ; Quasigeostrophic models
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    Intergyre salt transport in the climate warming response (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 50(1), (2020): 255-268, doi:10.1175/JPO-D-19-0166.1.
    Description: Regional connectivity is important to the global climate salinity response, particularly because salinity anomalies do not have a damping feedback with atmospheric freshwater fluxes and may therefore be advected over long distances by ocean circulation, resulting in nonlocal influences. Climate model intercomparison experiments such as CMIP5 exhibit large uncertainty in some aspects of the salinity response, hypothesized here to be a result of ocean dynamics. We use two types of Lagrangian particle tracking experiments to investigate pathways of exchange for salinity anomalies. The first uses forward trajectories to estimate average transport time scales between water cycle regimes. The second uses reverse trajectories and a freshwater accumulation method to quantitatively identify remote influences in the salinity response. Additionally, we compare velocity fields with both resolved and parameterized eddies to understand the impact of eddy stirring on intergyre exchange. These experiments show that surface anomalies are readily exchanged within the ocean gyres by the mean circulation, but intergyre exchange is slower and largely eddy driven. These dynamics are used to analyze the North Atlantic salinity response to climate warming and water cycle intensification, where the system is broadly forced with fresh surface anomalies in the subpolar gyre and salty surface anomalies in the subtropical gyres. Under these competing forcings, strong intergyre eddy fluxes carry anomalously salty subtropical water into the subpolar gyre which balances out much of the local freshwater input.
    Description: We acknowledge the World Climate Research Programme’s Working Group on Coupled Modelling, which is responsible for CMIP, and we thank the climate modeling groups (listed in Table 1 of this paper) for producing and making available their model output. We also thank the creators of the SODA and ECCO reanalysis products. This work was supported by NASA Headquarters under the NASA Earth and Space Science Fellowship Program Award 80NSSC17K0372, and by National Science Foundation Award OCE-1433132. The SODA outputs used here can be accessed at http://www.atmos.umd.edu/~ocean/, and the ECCO outputs at https://ecco.jpl.nasa.gov/. Data from the CMIP5 ensemble is available at https://esgf-node.llnl.gov/projects/esgf-llnl/. The particle tracking code used for these experiments can be found at https://github.com/slevang/particle-tracking.
    Description: 2020-07-20
    Keywords: North Atlantic Ocean ; Eddies ; Hydrologic cycle ; Lagrangian circulation/transport ; Transport ; Climate change
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    On material transport by shelfbreak eddies (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography, 49 (2), (2019): 607-630, doi:10.1175/JPO-D-18-0166.1.
    Description: The Lagrangian motion in the eddy field produced from an unstable retrograde jet along the shelf break is studied from idealized numerical experiments with a primitive equation model. The jet is initially in thermal wind balance with a cross-isobath density gradient and is not subjected to any atmospheric forcing. Over the course of the model integration, the jet becomes unstable and produces a quasi-stationary eddy field over a 2-month period. During this period, the cross-slope flow at the shelf break is characterized by along-slope correlation scales of O(10) km and temporal correlation scales of a few days. The relative dispersion of parcels across isobaths is found to increase with time as tb, where 1 〈 b 〈 2. This mixed diffusive–ballistic regime appears to reflect the combined effects of (i) the short length scales of velocity correlation at the shelf break and (ii) the seaward excursion of monopolar and dipolar vortices. Cross-slope dispersion is greater offshore of the front than inshore of the front, as offshore parcels are both subducted onshore below density surfaces and translated offshore with eddies. Nonetheless, the exchange of parcels across the jet remains very limited on the monthly time scale. Particles originating from the bottom experience upward displacements of a few tens of meters and seaward displacements of O(100) km, suggesting that the eddy activity engendered by an unstable along-slope jet provides another mechanism for bottom boundary layer detachment near the shelf edge.
    Description: The author expresses his gratitude to the researchers who contributed to the development and public dissemination of POM [for a list of contributors, see Mellor (2002) and comments in the source code]. Discussions with Kenneth Brink, Hyodae Seo, and Weifeng Zhang have been helpful. Comments provided by Kenneth Brink on a draft are gratefully acknowledged. The criticism from two anonymous reviewers allowed us to better focus the manuscript and to significantly improve its clarity. This work has been supported by Grant OCE-1556400 from the U.S. National Science Foundation.
    Description: 2020-02-18
    Keywords: Dispersion ; Eddies ; Frontogenesis/frontolysis ; Instability ; Lagrangian circulation/transport ; Jets
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    The effect of beta on the downstream development of unstable, chaotic baroclinic waves (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2337-2343, doi:10.1175/JPO-D-19-0097.1.
    Description: The weakly unstable, two-layer model of baroclinic instability is studied in a configuration in which the flow is perturbed at the inflow section of a channel by a slow and periodic perturbation. In a parameter regime where the governing equation would be the Lorenz equations for chaos if the development occurs only in time, the solution behavior becomes considerably more complex as a function of time and downstream coordinate. In the absence of the beta effect it has earlier been shown that the chaotic behavior along characteristics renders the solution nearly discontinuous in the slow downstream coordinate of the asymptotic model. The additional presence of the beta effect, although expunging the chaos for large enough values of the beta parameter, also provides an additional mechanism for abrupt spatial change.
    Description: 2020-02-28
    Keywords: Cyclogenesis/cyclolysis ; Eddies ; Microscale processes/variability ; Stability
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    Lagrangian dispersion and deformation in submesoscale flows (2019)
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Oceanography and Applied Ocean Science and Engineering at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2019.
    Description: Submesoscale currents, with horizontal length scales of 1-20 km, are an important element of upper ocean dynamics. These currents play a crucial role in the horizontal and vertical redistribution of tracers, the cascade of tracer variance to smaller scales, and in linking the mesoscale circulation with the dissipative scales. This thesis investigates submesoscale flows and their properties using Lagrangian trajectories of observed and modeled drifters. We analyze statistics of observed drifter pairs to characterize turbulent dispersion at submeso-scales. Contrary to theoretical expectations, we find that nonlocal velocity gradients associated with mesoscale eddies dominate the separation of drifters even at the kilometer scale. At submeso-scales, we observe energetic motions, such as near-inertial oscillations, that contribute to the energy spectrum but are inefficient at dispersion. Using trajectories in a model of submesoscale turbulence, we find that, if drifters have a vertical separation, vertical shear dominates the dispersion and conceals horizontal dispersion regimes from drifter observations. Particularly in submesoscale flows, vertical shear is orders of magnitude larger than horizontal gradients in velocity. Since conventional drifters in the ocean are not affected by vertical shear, it is likely that drifter-derived diffusivity underestimates the diffusivity that a tracer would experience. Lastly, we test and apply cluster-based methods, using three or more drifters, to estimate the velocity gradient tensor. Since velocity gradients become large at submesoscales, the divergence, strain, and vorticity control the evolution and deformation of clusters of drifters. Observing the velocity gradients using drifters, enables us to further constrain the governing dynamics and decipher submesoscale motions from inertia-gravity waves. These insights provide a Lagrangian perspective on submesoscale flows that illuminates scales that are challenging to observe from other platforms. We reveal observational and theoretical challenges that need to be overcome in future investigations.
    Description: My doctoral studies in the WHOI/MIT Joint Program were funded by the National Science Foundation (OCE-I434788) and the Office of Naval Research (N00014-13-1-0451, Grant N00014-16-1-2470).
    Keywords: Dissertations, Academic ; Ocean currents ; Dispersion ; Eddies
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    The Loop Current: Observations of deep eddies and topographic waves. (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019):1463-1483, doi: 10.1175/JPO-D-18-0213.1.
    Description: A set of float trajectories, deployed at 1500- and 2500-m depths throughout the deep Gulf of Mexico from 2011 to 2015, are analyzed for mesoscale processes under the Loop Current (LC). In the eastern basin, December 2012–June 2014 had 〉40 floats per month, which was of sufficient density to allow capturing detailed flow patterns of deep eddies and topographic Rossby waves (TRWs), while two LC eddies formed and separated. A northward advance of the LC front compresses the lower water column and generates an anticyclone. For an extended LC, baroclinic instability eddies (of both signs) develop under the southward-propagating large-scale meanders of the upper-layer jet, resulting in a transfer of eddy kinetic energy (EKE) to the lower layer. The increase in lower-layer EKE occurs only over a few months during meander activity and LC eddy detachment events, a relatively short interval compared with the LC intrusion cycle. Deep EKE of these eddies is dispersed to the west and northwest through radiating TRWs, of which examples were found to the west of the LC. Because of this radiation of EKE, the lower layer of the eastern basin becomes relatively quiescent, particularly in the northeastern basin, when the LC is retracted and a LC eddy has departed. A mean west-to-east, anticyclone–cyclone dipole flow under a mean LC was directly comparable to similar results from a previous moored LC array and also showed connections to an anticlockwise boundary current in the southeastern basin.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M08PC20043 to Leidos, Inc., Raleigh, NC. The authors also wish to acknowledge the enthusiastic support of Dr. Alexis Lugo-Fernández, the BOEM Contracting Officer’s Technical Representative, during the study into the Deep Circulation of the Gulf of Mexico, using Lagrangian Methods. Thanks go to the captains and crews of the R/V Pelican and B/O Justo Sierra, J. Malbrough (LUMCON), J. Singer (Leidos), J. Valdes (WHOI), B. Guest (WHOI), and the CANEK group (CICESE).
    Description: 2020-05-29
    Keywords: Bottom currents ; Eddies ; Instability ; Lagrangian circulation/transport ; Mesoscale processes ; Topographic effects
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    Intraseasonal variability of surface salinity in the eastern tropical pacific associated with mesoscale eddies. (2019)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124(4), (2019):2861-2875, doi: 10.1029/2018JC014175.
    Description: Strong variability in sea surface salinity (SSS) in the Eastern Tropical Pacific (ETPac) on intraseasonal to interannual timescales was studied using data from the Soil Moisture and Ocean Salinity, Soil Moisture Active Passive, and Aquarius satellite missions. A zonal wave number‐frequency spectral analysis of SSS reveals a dominant timescale of 50–180 days and spatial scale of 8°–20° of longitude with a distinct seasonal cycle and interannual variability. This intraseasonal SSS signal is detailed in the study of 19 individual ETPac eddies over 2010–2016 identified by their sea level anomalies, propagating westward at a speed of about 17 cm/s. ETPac eddies trap and advect water in their core westward up to 40° of longitude away from the coast. The SSS signatures of these eddies, with an average anomaly of 0.5‐pss magnitude difference from ambient values, enable the study of their dynamics and the mixing of their core waters with the surroundings. Three categories of eddies were identified according to the location where they were first tracked: (1) in the Gulf of Tehuantepec, (2) in the Gulf of Papagayo, and (3) in the open ocean near 100°W–12°N. They all traveled westward near 10°N latitude. Category 3 is of particular interest, as eddies seeded in the Gulf of Tehuantepec grew substantially in the vicinity of the Clipperton Fracture Zone rise and in a region where the mean zonal currents have anticyclonic shear. The evolution of the SSS signature associated with the eddies indicates the importance of mixing to their dissipation.
    Description: This research was carried out in part at the Jet Propulsion Laboratory (JPL), California Institute of Technology, under a contract with NASA and part at LOCEAN (Sorbonne Université, CNRS, IRD, MNHN) under a CNES Postdoctoral fellowship. This work is supported by NASA Grants NNX11AE83G and NNX14AH38G and is a contribution to the TOSCA/SMOS‐Ocean proposal supported by CNES. We thank the reviewers for their thoughtfully comments that lead to a much‐improved manuscript. We benefited from numerous data sets made freely available and are listed here: The SMOS debias_v2 SSS have been produced by LOCEAN laboratory and ACRI‐st company that participate to the Ocean Salinity Expertise Center (CEC‐OS) of Centre Aval de Traitement des Donnees SMOS (CATDS). of CATDS at IFREMER, Plouzane, France (http://www.catds.fr/Products, see documentation: http://www.catds.fr/Products/Available‐products‐from‐CEC‐OS/L3‐Debiased‐Locean‐v2); the Aquarius/SAC‐D and SMAP data was produced by Remote Sensing Systems and distributed by PODAAC (https://podaac.jpl.nasa.gov/dataset/AQUARIUS_L3_SSS_SMI_7DAY_V4; https://podaac.jpl.nasa.gov/dataset/SMAP_RSS_L3_SSS_SMI_8DAY‐RUNNINGMEAN_V2); the SLA product is processed and distributed by CMEMS (http://marine.copernicus.eu); the global atlas of eddies is produced by AVISO (https://www.aviso.altimetry.fr/en/data/products/value‐added‐products/global‐mesoscale‐eddy‐trajectory‐product.html); the GPCP precipitation data set (http://eagle1.umd.edu/GPCP_CDR/Monthly_Data) is described in the project technical report (http://eagle1.umd.edu/GPCP_ICDR/GPCPmonthlyV2.3.pdf); Woods Hole Oceanographic Institution OAFlux evaporation data set (ftp://ftp.whoi.edu/pub/science/oaflux/data_v3); UCAR high‐resolution terrain data set (High res terrain data set https://rda.ucar.edu/datasets/ds759.2/#!description); Chelton et al. (1998) Global Atlas of the First‐Baroclinic Rossby Radius of Deformation and Gravity‐Wave Phase Speed (http://www‐po.coas.oregonstate.edu/research/po/research/rossby_radius/).
    Description: 2019-09-28
    Keywords: Eddies ; Mesoscale ; Salinity ; Pacific
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  • 39
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    Niphargus-Thiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern Romania. (2018)
    Details
    Publication Date: 2021-04-25
    Description: Niphargus is a speciose amphipod genus found in groundwater habitats across Europe. Three Niphargus species living in the sulphidic Frasassi caves in Italy harbour sulphur-oxidizing Thiothrix bacterial ectosymbionts. These three species are distantly related, implying that the ability to form ectosymbioses with Thiothrix may be common among Niphargus. Therefore, Niphargus-Thiothrix associations may also be found in sulphidic aquifers other than Frasassi. In this study, we examined this possibility by analysing niphargids of the genera Niphargus and Pontoniphargus collected from the partly sulphidic aquifers of the Southern Dobrogea region of Romania, which are accessible through springs, wells and Movile Cave. Molecular and morphological analyses revealed seven niphargid species in this region. Five of these species occurred occasionally or exclusively in sulphidic locations, whereas the remaining two were restricted to nonsulphidic areas. Thiothrix were detected by PCR on all seven Dobrogean niphargid species and observed using microscopy to be predominantly attached to their hosts' appendages. 16S rRNA gene sequences of the Thiothrix epibionts fell into two main clades, one of which (herein named T4) occurred solely on niphargids collected in sulphidic locations. The other Thiothrix clade was present on niphargids from both sulphidic and nonsulphidic areas and indistinguishable from the T3 ectosymbiont clade previously identified on Frasassi-dwelling Niphargus. Although niphargids from Frasassi and Southern Dobrogea are not closely related, the patterns of their association with Thiothrix are remarkably alike. The finding of similar Niphargus-Thiothrix associations in aquifers located 1200 km apart suggests that they may be widespread in European groundwater ecosystems.
    Keywords: amphipods; ecology; sulphide; symbiosis; systematics; taxonomy ; 551 ; Amphipoda ; Animals ; DNA, Bacterial ; Ecosystem ; Groundwater ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S ; Romania ; Sequence Analysis, DNA ; Sulfur ; Symbiosis ; Thiothrix
    Language: English , English
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  • 40
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    Hydrography of the Gulf of Mexico using autonomous floats (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 773-794, doi:10.1175/JPO-D-17-0205.1.
    Description: Fourteen autonomous profiling floats, equipped with CTDs, were deployed in the deep eastern and western basins of the Gulf of Mexico over a four-year interval (July 2011–August 2015), producing a total of 706 casts. This is the first time since the early 1970s that there has been a comprehensive survey of water masses in the deep basins of the Gulf, with better vertical resolution than available from older ship-based surveys. Seven floats had 14-day cycles with parking depths of 1500 m, and the other half from the U.S. Argo program had varying cycle times. Maps of characteristic water masses, including Subtropical Underwater, Antarctic Intermediate Water (AAIW), and North Atlantic Deep Water, showed gradients from east to west, consistent with their sources being within the Loop Current (LC) and the Yucatan Channel waters. Altimeter SSH was used to characterize profiles being in LC or LC eddy water or in cold eddies. The two-layer nature of the deep Gulf shows isotherms being deeper in the warm anticyclonic LC and LC eddies and shallower in the cold cyclones. Mixed layer depths have an average seasonal signal that shows maximum depths (~60 m) in January and a minimum in June–July (~20 m). Basin-mean steric heights from 0–50-m dynamic heights and altimeter SSH show a seasonal range of ~12 cm, with significant interannual variability. The translation of LC eddies across the western basin produces a region of low homogeneous potential vorticity centered over the deepest part of the western basin.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M08PC20043 to Leidos, Inc., Raleigh, North Carolina.
    Description: 2018-10-04
    Keywords: Eddies ; Mixing ; Potential vorticity ; Surface layer ; Water masses
    Repository Name: Woods Hole Open Access Server
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  • 41
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    Movements and oceanographic associations of large pelagic fishes in the North Atlantic Ocean (2018)
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution September 2018
    Description: Highly migratory marine fishes support valuable commercial fisheries worldwide. Yet, many target species have proven difficult to study due to long-distance migrations and regular deep diving. Despite the dominance of oceanographic features, such as fronts and eddies, in the open ocean, the biophysical interactions occurring at the oceanic (sub)mesoscale (〈 100 km) remain poorly understood. This leads to a paucity of knowledge on oceanographic associations of pelagic fishes and hinders management efforts. With ever-improving oceanographic datasets and modeling outputs, we can leverage these tools both to derive better estimates of animal movements and to quantify fish-environment interactions. In this thesis, I developed analytical tools to characterize the biophysical interactions influencing animal behavior and species’ ecology in the open ocean. A novel, observation-based likelihood framework was combined with a Bayesian state-space model to improve geolocation estimates for archival-tagged fishes using oceanographic profile data. Using this approach, I constructed track estimates for a large basking shark tag dataset using a high-resolution oceanographic model and discovered a wide range of movement strategies. I also applied this modeling approach to track archival-tagged swordfish, which revealed affinity for thermal front and eddy habitats throughout the North Atlantic that was further corroborated by synthesizing these results with a fisheries-dependent conventional tag dataset. An additive modeling approach applied to longline catch-per-unit effort data further highlighted the biophysical interactions that characterize variability in swordfish catch. In the final chapter, I designed a synergistic analysis of high-resolution, 3D shark movements and satellite observations to quantify the influence of mesoscale oceanography on blue shark movements and behavior. This work demonstrated the importance of eddies in structuring the pelagic ocean by influencing the movements of an apex predator and governing the connectivity between deep scattering layer communities and deep-diving, epipelagic predators. Together, these studies demonstrate the breadth and depth of information that can be garnered through the integration of traditional animal tagging and oceanographic research with cutting-edge analytical approaches and high-resolution oceanographic model and remote sensing datasets, the product of which provides a transformative view of the biophysical interactions occurring in and governing the structure of the pelagic ocean.
    Description: Supported by the NASA Earth and Space Science Fellowship, the MIT John S. Hennessy Fellowship, the MIT Martin Family Society of Fellows for Sustainability Fellowship, the WHOI Ocean Venture, Grassle, and James Stratton Fellowships and the WHOI Academic Programs Office. This research and its dissemination was supported by funds from National Geographic, Amazon Web Services, the Explorers Club, Rolex, Sigma Xi, the MIT Center for International Studies, WHOI Access to the Sea and Coastal Ocean Institute Funds, MIT Graduate Student Council, MIT Student Assistance Fund, WHOI Biology Department, American Fisheries Society, WHOI Academic Programs Office
    Keywords: Fishes ; Fisheries ; Pelagic fishes ; Eddies ; Animal marking
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 42
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    Deep eddies in the Gulf of Mexico observed with floats (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 2703-2719, doi:10.1175/JPO-D-17-0245.1.
    Description: A new set of deep float trajectory data collected in the Gulf of Mexico from 2011 to 2015 at 1500- and 2500-m depths is analyzed to describe mesoscale processes, with particular attention paid to the western Gulf. Wavelet analysis is used to identify coherent eddies in the float trajectories, leading to a census of the basinwide coherent eddy population and statistics of the eddies’ kinematic properties. The eddy census reveals a new formation region for anticyclones off the Campeche Escarpment, located northwest of the Yucatan Peninsula. These eddies appear to form locally, with no apparent direct connection to the upper layer. Once formed, the eddies drift westward along the northern edge of the Sigsbee Abyssal Gyre, located in the southwestern Gulf of Mexico over the abyssal plain. The formation mechanism and upstream sources for the Campeche Escarpment eddies are explored: the observational data suggest that eddy formation may be linked to the collision of a Loop Current eddy with the western boundary of the Gulf. Specifically, the disintegration of a deep dipole traveling under the Loop Current eddy Kraken, caused by the interaction with the northwestern continental slope, may lead to the acceleration of the abyssal gyre and the boundary current in the Bay of Campeche region.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M10PC00112 to Leidos, Inc., Raleigh, North Carolina.
    Description: 2019-05-07
    Keywords: Abyssal circulation ; Currents ; Eddies ; Mesoscale processes ; Trajectories ; In situ oceanic observations
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  • 43
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    Surface cooling, winds, and eddies over the continental shelf (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 47 (2017): 879-894, doi:10.1175/JPO-D-16-0196.1.
    Description: Models show that surface cooling over a sloping continental shelf should give rise to baroclinic instability and thus tend toward gravitationally stable density stratification. Less is known about how alongshore winds affect this process, so the role of surface momentum input is treated here by means of a sequence of idealized, primitive equation numerical model calculations. The effects of cooling rate, wind amplitude and direction, bottom slope, bottom friction, and rotation rate are all considered. All model runs lead to instability and an eddy field. While instability is not strongly affected by upwelling-favorable alongshore winds, wind-driven downwelling substantially reduces eddy kinetic energy, largely because the downwelling circulation plays a similar role to baroclinic instability by flattening isotherms and so reducing available potential energy. Not surprisingly, cross-shelf winds appear to have little effect. Analysis of the model runs leads to quantitative relations for the wind effect on eddy kinetic energy for the equilibrium density stratification (which increases as the cooling rate increases) and for eddy length scale.
    Description: This research was supported by the National Science Foundation Physical Oceanography Program through Grant OCE-1433953.
    Keywords: Continental shelf/slope ; Baroclinic flows ; Eddies ; Instability
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    Eddy memory mode of multidecadal variability in residual-mean ocean circulations with application to the Beaufort Gyre (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 47 (2017): 855-866, doi:10.1175/JPO-D-16-0194.1.
    Description: Mesoscale eddies shape the Beaufort Gyre response to Ekman pumping, but their transient dynamics are poorly understood. Climate models commonly use the Gent–McWilliams (GM) parameterization, taking the eddy streamfunction to be proportional to an isopycnal slope s and an eddy diffusivity K. This local-in-time parameterization leads to exponential equilibration of currents. Here, an idealized, eddy-resolving Beaufort Gyre model is used to demonstrate that carries a finite memory of past ocean states, violating a key GM assumption. As a consequence, an equilibrating gyre follows a spiral sink trajectory implying the existence of a damped mode of variability—the eddy memory (EM) mode. The EM mode manifests during the spinup as a 15% overshoot in isopycnal slope (2000 km3 freshwater content overshoot) and cannot be explained by the GM parameterization. An improved parameterization is developed, such that is proportional to an effective isopycnal slope , carrying a finite memory γ of past slopes. Introducing eddy memory explains the model results and brings to light an oscillation with a period ≈ 50 yr, where the eddy diffusion time scale TE ~ 10 yr and γ ≈ 6 yr are diagnosed from the eddy-resolving model. The EM mode increases the Ekman-driven gyre variance by γ/TE ≈ 50% ± 15%, a fraction that stays relatively constant despite both time scales decreasing with increased mean forcing. This study suggests that the EM mode is a general property of rotating turbulent flows and highlights the need for better observational constraints on transient eddy field characteristics.
    Description: GEM acknowledges the Stanback Postdoctoral Fellowship Fund at Caltech and the Howland Postdoctoral Program Fund at WHOI. MAS was supported by NSF Grants PLR-1415489 and OCE- 1232389. AFT acknowledges support from NSF OCE- 1235488.
    Keywords: Arctic ; Eddies ; Ekman pumping/transport ; Mesoscale processes ; Parameterization ; Multidecadal variability
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  • 45
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    Gulf Stream ring trajectories (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Physical Oceanography 10 (1980): 90-104
    Description: During the period 1976-78, the movement of 14 Gulf Stream rings, including two anticyclonic and 12 cyclonic rings, was measured with satellite-tracked free-drifting buoys. The buoys in the cyclonic rings showed a tendency to move out toward the high-velocity region of the ring and to remain there circling the center. One buoy stayed in a ring as long as 8 months and completed 86 loops. Periods of rotation ranged from less than 2 days up to 10 days. The movement of the rings was complicated and appears to be related to the Gulf Stream and strong topographic features such as the New England Seamounts . Rings that were not touching the Stream generally moved westward with typical speeds of 5 cm s-1. Rings that were attached to the Stream generally moved downstream in the Stream with speeds up to 75 cm s-1 . Frequently rings coalesced with the Gulf Stream and one of the following three things seemed to happen: I) the ring turned into an open meander of the Stream and was lost; 2) the ring was advected rapidly downstream in the Stream and was presumably lost; and 3) the ring became attached to the Gulf Stream and then split off again as a modified ring. The results of this study, that frequently strong interactions occur between rings and the Gulf Stream, are in contrast to my original view that rings slowly translate southwestward through the Sargasso Sea and gradually decay there.
    Description: Prepared for the Office of Naval Research under Contract N00014-74-C-0262; NR 083-004 and for the National Science Foundation under Grants OCE 75-08765 and OCE 76-82059.
    Keywords: Buoys ; Eddies
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  • 46
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    The physical structure and life history of cyclonic Gulf Stream ring, Allen (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Geophysical Research 84 (1979): 7727-7741
    Description: A cyclonic Gulf Stream ring, Allen, was followed over its life from September 1976 to April 1977 in the region north of Bermuda. Conductivity, temperature, and depth; expendable bathythermograph; and velocity profile measurements were made in Allen, and over the last 5 months of its life, satellite buoys were used to track continuously its movement. The measurements indicate that in December 1976 Allen split into two rings, a large one, Allen, and a small one, Arthur. Arthur moved rapidly eastward and coalesced with the Gulf Stream near the New England seamounts. Allen moved in a large clockwise loop; at the end of February 1977 it became attached to the Gulf Stream and reformed into a modified ring, smaller in size and faster in rotation . At the end of April 1977 the modified ring coalesced with the Gulf Stream and disappeared as it was advected downstream in the stream. The principal results of this study are that (I) the New England Seamount chain was a major influence in the genesis of Allen and on the trajectories of nearby rings; (2) while a free eddy, months after its formation, Allen evolved into a bi modal or peanut-shaped structure; (3) the bimodal structure ultimately bifurcated, spawning a new isolated eddy, denoted as Arthur, and a modified remnant, Allen; (4) the velocity field of Allen involved the whole water column, with bottom velocities of 10-15 em s- 1; (5) the barotropic velocity at the center of Allen (6 cm s-1 to NNW) was about equal to its translation velocity (4 cm s-1 to NW); (6) especially energetic inertial motions were seen at the center of Allen, and these may play a role in enhancing the stirring of water properties; (7) Allen survived several close encounters or entrainments with the Gulf Stream, proving that such encounters can be nonfatal to a ring; (8) the encounters appear to result in injections (exchanges) of water (momentum, heat, etc.) into the rings at an estimate rate of 106 m3 s-1 per ring; and (9) the behavior of Allen and Arthur was in contrast to the results of some other studies which have shown that rings generally drift slowly and passively southwestward.
    Description: Prepared for the Office of Naval Research under Contract N000 14-74-C-0262; NR 083-004 and for the National Science Foundation under Grants OCE 76-82059, DES 74-02783, and OCE 76-24605.
    Keywords: Eddies ; Oceanographic buoys
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  • 47
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    Sound channel propagation through eddies southeast of the Gulf Stream (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of the Acoustical Society of America 68 (1980): 1750-1767
    Description: Acoustical signals at 270 Hz from SOFAR floats drifting in the region southeast of the Gulf Stream were recorded during most of 1975 from a near axis sound channel hydrophone near Bermuda. The amplitude levels received exhibit a large increase (12–18 dB) commencing about 24 July, following a long period (March to July) of relatively lower peak level amplitudes. A major part of the increase can be attributed to the influence of a large cyclonic eddy (Gulf Stream ring) that passed slowly between the SOFAR floats and Bermuda. Such an eddy produces a large sound speed anomaly that extends to depths below the axis of the sound channel. On 24 July, two SOFAR floats were known to have approximately the same sound transmission path through the edge of the large eddy. The sound transmission peaks occur when no ocean eddy is between the SOFAR floats and the receiver. Their spacing shows they occur at regular refraction caustics in the sound channel. When the sound transmission path passes through an eddy, these transmission focal distances are shifted to greater range and the signal level may be greatly enhanced. The decrease of caustic peak intensities with range is 5 dB per double distance, and this agrees with theory. Several different levels of peak acoustic intensity occur and these result from two float depths and oceanic thermocline oscillations.
    Description: Prepared for the Office of Naval Research under Contract N00014-74-C-0262; NR 083-004·.
    Keywords: Underwater acoustics ; Eddies
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  • 48
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    Available potential energy for mode eddies (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Physical Oceanography 11 (1981): 30-47
    Description: Available potential energy (APE) is defined as the difference between total potential plus internal energy of a fluid in a gravity field and a corresponding reference field in which the fluid is redistributed (leveled) adiabatically to have constant stably-stratified densities along geopotential surfaces. Potential energy changes result from local shifts of flu id mass relative to geopotential surfaces that are accompanied by local changes of enthalpy and internal energy and global shifts of mass (because volumes of fluid elements are not conserved) that do not change enthalpy or internal energy. The potential energy changes are examined separately by computing available gravitational potential energy (GPE) per unit mass and total GPE (TGPE) per unit area. A technique for estimating GPE in the ocean is developed by introducirtg a reference density field (or an equivalent specific volume anomaly field) that is a function of pressure only and is connected to the observed field by adiabatic vertical displacements. The full empirical equation of state for seawater is used in the computational algorithm. The accuracy of the estimate is limited by the data and sampling and not by the algorithm itself, which can be made as precise as desired. The reference density field defined locally for an ocean region allows redefinition of dynamic height ΔD (potential energy per unit mass) relative to the reference field. TGPE per unit area becomes simply the horizontal average of dynamic height integrated over depth in the region considered. The reference density surfaces provide a precise approximation to material surfaces for tracing conservative variables such as salinity and potential temperature and for estimating vortex stretching between surfaces. The procedure is applied to the MODE density data collected in 1973. For each group of stations within five 2-week time windows (designated Groups A-E) the estimated GPE is compared with the net APE based on the Boussinesq approximation and to the low-frequency kinetic energy measured from moored buoys. Changes of potential energy of the reference field from one time window to the next are large compared with the GPE within each window, indicating the presence of scales larger than the station grid. An analysis of errors has been made to show the sensitivity of the estimates to data accuracy and sampling frequency.
    Description: Prepared for the Office of Naval Research under Contract N00014-76-C-0197.
    Keywords: Eddies ; Ocean circulation
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  • 49
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    A note on some uses of Θ-S sections (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Geophysical Research 86 (1981): 6649-6652
    Description: Isohalines plotted against temperature and horizontal distance along a hydrographic section can be used to observe changes in the T-S or Θ-S relationship of water masses. By using this technique, eddies formed off the Somali coast during the southwest monsoon, or Gulf Stream eddies having their own individual T-S characteristics, may be identified.
    Description: Prepared for the Office of Naval Research under Contract N00014-79-C-0071; NR 083-004.
    Keywords: Eddies ; Sea salt
    Repository Name: Woods Hole Open Access Server
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  • 50
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    Gulf Stream trajectories measured with free-drifting buoys (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Physical Oceanography 11 (1981): 999-1010
    Description: During 1975-78, 35 free-drifting buoys measured surface currents in the Gulf Stream region. The buoy trajectories trace numerous paths of the Stream and show that the Stream is strongly influenced by the New England Seamounts. This influence is manifested as 1) a quasi-permanent, 100 km, southeastward deflection of the Stream and the frequent occurrence of a ring meander over the seamounts; 2) large-amplitude meanders beginning at the seamounts and extending eastward; and 3) small, 20 km diameter eddies which appear to be generated locally by individual seamounts. A chart of the mean temperature field at a depth of 450 m agrees with several of the patterns seen in the buoy trajectories. West of the seamounts, the mean path of the Gulf Stream is eastward; over the seamounts, the path turns sharply northeastward and the isotherms in the Stream abruptly diverge.
    Description: Prepared for the Office of Naval Research under Contract N000 14-74-C- 0262; NR 083-004 and for the National Science Foundation under Grant OCE 78-18017.
    Keywords: Eddies ; Ocean circulation
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  • 51
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    Effects of variations in eddy diffusivity on property distributions in the oceans (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Marine Research 37 (1979): 515-529
    Description: The hypothesis that variations in eddy diffusivity may be responsible for some of the observed distributions of oceanic scalars is explored. A gradient in eddy diffusivity affects property distributions much as would an additional velocity field from regions of high to low eddy diffusivity. In support of such an interpretation, the cross-isopycnal distribution of density is compared with an eddy diffusivity prescribed by the combination of boundary mixing and isopycnal exchange. Since the surface area available for boundary mixing varies with depth, similar variations are reflected in property distributions. For isopycnal distributions, an eddy diffusivity field inferred from the eddy potential energy field description of Dantzler (1977) is compared with the salinity distribution from the Mediterranean Outflow.
    Description: Prepared for the Office of Naval Research under Contract N00014-76-C-0197; NR 083-400 and for the National Science Foundation under Grant OCE 76-81190.
    Keywords: Eddies ; Oceanography
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  • 52
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    Observed and numerically simulated kinetic energies for MODE eddies (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Physical Oceanography (1979) 9: 1294-1297
    Description: It is demonstrated that the outcome of an intercomparison between data and the vertical distribution of eddy kinetic energy predicted by a previously developed numerical model of the MODE area is frequency dependent. In the range of periods from 50 to 150 or even to 400 days (one definition of the temporal mesoscale, the scale that the model was designed to simulate), the comparison is quite good. For periods in the range of 5 to 50 days, the agreement is poor. For periods longer than 400 days , the comparison is indeterminate. Earlier conclusions concerning the relation of model results to the MODE data should be qualified by stipulating frequency range , and future intercomparisons for any model in all regions should be conscious of the desirability of doing so across common frequencies.
    Description: Prepared for the Office of Naval Research under Contract N00014-76-C-0197; NR 083-400 and for the International Decade of Ocean Exploration Office of the National Science Foundation under Grant OCE 75-03962.
    Keywords: Mid-Ocean Dynamics Experiment (MODE) ; Ocean currents ; Eddies
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  • 53
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    Eddies off the Somali coast during the southwest monsoon (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Geophysical Research 84 (1979): 7742- 7748
    Description: The development and decay of the large eddy in the northern Somali Basin and its smaller associated eddies each southwest monsoon in the northwestern Indian Ocean has been monitored for four consecutive years by a time series of temperature sections obtained along the tanker sea lane across the Somali Basin. The evidence suggests that the large eddy first forms between 4°N to 12°N during late May and tends to remain approximately in this location throughout the entire southwest monsoon.
    Description: Prepared for the Office of Naval Research under Contract N00014-74-C-0262; NR 083- 004.
    Keywords: Eddies ; Ocean circulation ; Monsoons
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  • 54
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    Anticyclonic eddies generated near the corner rise seamounts (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Marine Research 38 (1980): 673-686
    Description: During 1977 two freely drifting buoys, originally in the Gulf Stream, looped over and in the lee of the Corner Rise seamounts. The trajectories suggest that by mid-August an anticyclonic eddy was generated over the seamounts, where it remained for six weeks. During the period October-December it left the seamounts and drifted southwestward with a mean speed of 5 em/sec. The eddy was characterized by a clockwise circulation with speeds of 30 em/sec and an overall size of 200 km. An XBT survey showed that the eddy contained a warm core manifested by a depression of the main thermocline; at the center the 15• isotherm was located ·at a depth of 715 m. During the period June-August a third buoy looped in a second anticyclonic eddy which also drifted southwestward in the lee of the Corner Rise. The implication of these measurements is that, every few months, warm core eddies form near the Corner Rise and that they subsequently drift southwestward forming a wake region downstream of the seamounts.
    Description: Prepared for the National Science Foundation under Grant OCE 78-18017, the Office of Naval Research under Contract N00014-74-C-0262; NR 083- 004 and the United States-France Exchange of Scientists Program sponsored by the National Science Foundation and the Centre National de al Recherche Scientifique.
    Keywords: Eddies ; Buoys
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  • 55
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    Somali eddy formation during the commencement of the southwest monsoon, 1978 (2018)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Also published as: Journal of Geophysical Research 85 (1980): 6654-6660
    Description: An early stage of the Somali eddy circulation was mapped in the period May 29 to June 13, 1978, using expendable bathythermograph data at closely spaced stations. By this time the SW monsoon had been blowing at 5°N for about 4 weeks and the large anticyclonic eddy in the northern Somali Basin was clearly discernible between 3°N and 10°N. It is estimated that the offshore transport at this time was approximately half of that occurring during the period when the eddy reaches maximum size and strength during August and September. A smaller southern eddy was observed just offshore between the equator and 3°N.
    Description: Prepared for the Office of Naval Research under Contracts N00014-74-C-0262; NR 083-004 and N00014-79-C-0071; NR 083- 004.
    Keywords: Ocean currents ; Monsoons ; Eddies
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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    Downstream evolution of the Kuroshio's time-varying transport and velocity structure (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 3519–3542, doi:10.1002/2016JC012519.
    Description: Observations from two companion field programs—Origins of the Kuroshio and Mindanao Current (OKMC) and Observations of Kuroshio Transport Variability (OKTV)—are used here to examine the Kuroshio's temporal and spatial evolution. Kuroshio strength and velocity structure were measured between June 2012 and November 2014 with pressure-sensor equipped inverted echo sounders (PIESs) and upward-looking acoustic Doppler current profilers (ADCPs) deployed across the current northeast of Luzon, Philippines, and east of Taiwan with an 8 month overlap in the two arrays' deployment periods. The time-mean net (i.e., integrated from the surface to the bottom) absolute transport increases downstream from 7.3 Sv (±4.4 Sv standard error) northeast of Luzon to 13.7 Sv (±3.6 Sv) east of Taiwan. The observed downstream increase is consistent with the return flow predicted by the simple Sverdrup relation and the mean wind stress curl field over the North Pacific (despite the complicated bathymetry and gaps along the North Pacific western boundary). Northeast of Luzon, the Kuroshio—bounded by the 0 m s−1 isotach—is shallower than 750 dbar, while east of Taiwan areas of positive flow reach to the seafloor (3000 m). Both arrays indicate a deep counterflow beneath the poleward-flowing Kuroshio (–10.3 ± 2.3 Sv by Luzon and −12.5 ± 1.2 Sv east of Taiwan). Time-varying transports and velocities indicate the strong influence at both sections of westward propagating eddies from the ocean interior. Topography associated with the ridges east of Taiwan also influences the mean and time-varying velocity structure there.
    Description: Office of Naval Research (ONR) Grant Numbers: N00014-15-12593 , N00014-16-13069; Taiwan's Ministry of Science and Technology Grant Numbers: NSC 101-2611-M-002-018-MY3 , MOST 103-2611-M-002-011 , MOST 105-2119-M-002-042; ONR Grant Numbers: N00014-10-1-0308 , N00015-10-1-0469
    Description: 2017-11-02
    Keywords: Kuroshio ; PIES ; ADCP ; Eddies ; Western boundary current ; Altimetry
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    ACC meanders, energy transfer, and barotropic–baroclinic instability (2017)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 47 (2017): 1291-1305, doi:10.1175/JPO-D-16-0160.1.
    Description: Along-stream variations in the dynamics of the Antarctic Circumpolar Current (ACC) impact heat and tracer transport, regulate interbasin exchange, and influence closure of the overturning circulation. Topography is primarily responsible for generating deviations from zonal-mean properties, mainly through standing meanders associated with regions of high eddy kinetic energy. Here, an idealized channel model is used to explore the spatial distribution of energy exchange and its relationship to eddy geometry, as characterized by both eddy momentum and eddy buoyancy fluxes. Variations in energy exchange properties occur not only between standing meander and quasi-zonal jet regions, but throughout the meander itself. Both barotropic and baroclinic stability properties, as well as the magnitude of energy exchange terms, undergo abrupt changes along the path of the ACC. These transitions are captured by diagnosing eddy fluxes of energy and by adopting the eddy geometry framework. The latter, typically applied to barotropic stability properties, is applied here in the depth–along-stream plane to include information about both barotropic and baroclinic stability properties of the flow. These simulations reveal that eddy momentum fluxes, and thus barotropic instability, play a leading role in the energy budget within a standing meander. This result suggests that baroclinic instability alone cannot capture the dynamics of ACC standing meanders, a challenge for models where eddy fluxes are parameterized.
    Description: The authors all acknowledge support from NSF OCE-1235488. MKY also acknowledges support from the AMS Graduate Student Fellowship.
    Description: 2017-10-12
    Keywords: Southern Ocean ; Channel flows ; Stability ; Topographic effects ; Eddies ; Mesoscale models
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  • 58
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    Offshore transport of shelf water by deep-ocean eddies (2017)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3599-3621, doi:10.1175/JPO-D-16-0085.1.
    Description: At continental margins, energetic deep-ocean eddies can transport shelf water offshore in filaments that wrap around the eddy. One example is that of Gulf Stream warm-core rings interacting with the Mid-Atlantic Bight shelf. The rate at which shelf water is exported in these filaments is a major unknown in regional budgets of volume, heat, and salt. This unknown transport is constrained using a series of idealized primitive equation numerical experiments wherein a surface-intensified anticyclonic eddy interacts with idealized shelf–slope topography. There is no shelfbreak front in these experiments, and shelf water is tracked using a passive tracer. When anticyclones interact with shelf–slope topography, they suffer apparent intrusions of shelf–slope water, resulting in a subsurface maximum in offshore transport. The simulations help construct an approximate model for the filament of exported water that originates inshore of any given isobath. This model is then used to derive an expression for the total volume of shelf–slope water transported by the eddy across that isobath. The transport scales with water depth, radius, and azimuthal velocity scale of the eddy. The resulting expression can be used with satellite-derived eddy properties to estimate approximate real-world transports ignoring the presence of a shelfbreak front. The expression assumes that the eddy’s edge is at the shelf break, a condition not always satisfied by real eddies.
    Description: The research presented here was funded by NSF Grants OCE-1059632 and OCE-1433953. Funding support from the Academic Programs Office, and WHOI is also gratefully acknowledged.
    Description: 2017-06-08
    Keywords: Continental shelf/slope ; Advection ; Dynamics ; Eddies ; Topographic effects
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    The importance of lateral variability on exchange across the inner shelf south of Martha's Vineyard, MA (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 2360–2381, doi:10.1002/2016JC012491.
    Description: This study examines the spatial variability of transport within the inner-shelf south of Martha's Vineyard Massachusetts, its time and space dependence, and its importance to the total volume exchanged between the nearshore and the coastal ocean. The exchange of water across the inner shelf is often considered to be driven primarily by wind forcing, yet the effects of small-scale O(1–10 km) variability on the total exchange have not been well quantified. Using a combination of high-resolution HF radar-based surface currents and a dense array of moorings to document the lateral variability of across-shelf exchange, the cumulative wind-driven across-shelf transport over the summer stratified period was less than the volume of the inner-shelf onshore of the 25 m isobath. Along-shelf variations in the wind-driven exchange were as large as the spatial mean of the wind-driven exchange. A spatially varying time-averaged circulation caused by tidal rectification resulted in across-shelf exchange larger in magnitude than, and independent of, the integrated wind-forced exchange. Coherent submesoscale eddies also occurred frequently within the domain due to flow-topography effects onshore and horizontal density gradients offshore, generally with lifespans shorter than 10 h, diameters smaller than 6 km, and vertical depths shallower than 10 m. The across-shelf volume transport due to eddies, estimated by seeding particles within the surface current fields, was more than half the wind-driven depth-dependent exchange. Thus, accounting for the potential coherent along-shelf variability present over the inner shelf can significantly increase estimates of the across-shelf transfer of water masses and particles.
    Description: The 2014 ISLE field study as well as this analysis was supported by NSF OCE grant 1332646 and the Woods Hole Oceanographic Institution.
    Description: 2017-09-24
    Keywords: Inner shelf ; Across-shelf transport ; Spatial variability ; Exchange ; Eddies ; Martha's Vineyard
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    Processes influencing formation of low-salinity high-biomass lenses near the edge of the Ross Ice Shelf (2017)
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Marine Systems 166 (2017): 108-119, doi:10.1016/j.jmarsys.2016.07.002.
    Description: Both remotely sensed and in situ observations in austral summer of early 2012 in the Ross Sea suggest the presence of cold, low-salinity, and high-biomass eddies along the edge of the Ross Ice Shelf (RIS). Satellite measurements include sea surface temperature and ocean color, and shipboard data sets include hydrographic profiles, towed instrumentation, and underway acoustic Doppler current profilers. Idealized model simulations are utilized to examine the processes responsible for ice shelf eddy formation. 3-D model simulations produce similar cold and fresh eddies, although the simulated vertical lenses are quantitatively thinner than observed. Model sensitivity tests show that both basal melting underneath the ice shelf and irregularity of the ice shelf edge facilitate generation of cold and fresh eddies. 2-D model simulations further suggest that both basal melting and downwelling-favorable winds play crucial roles in forming a thick layer of low-salinity water observed along the edge of the RIS. These properties may have been entrained into the observed eddies, whereas that entrainment process was not captured in the specific eddy formation events studied in our 3-D model—which may explain the discrepancy between the simulated and observed eddies, at least in part. Additional sensitivity experiments imply that uncertainties associated with background stratification and wind stress may also explain why the model underestimates the thickness of the low-salinity lens in the eddy interiors. Our study highlights the importance of incorporating accurate wind forcing, basal melting, and ice shelf irregularity for simulating eddy formation near the RIS edge. The processes responsible for generating the high phytoplankton biomass inside these eddies remain to be elucidated.
    Description: YL is supported by the Postdoctoral Scholarship Program at Woods Hole Oceanographic Institution, with funding provided by the Dr. George D. Grice Postdoctoral Scholarship.
    Description: 2018-07-07
    Keywords: Eddies ; Instability ; Basal melting ; Mixed layer processes ; Ice shelf geometry
    Repository Name: Woods Hole Open Access Server
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    The occurrence, drivers, and implications of submesoscale eddies on the Martha’s Vineyard Inner Shelf (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2645-2662, doi:10.1175/JPO-D-15-0191.1.
    Description: The occurrence, drivers, and implications of small-scale O(2–5) km diameter coherent vortices, referred to as submesoscale eddies, over the inner shelf south of Martha’s Vineyard, Massachusetts, are examined using high-frequency (HF), radar-based, high-resolution (400 m) observations of surface currents. Within the 300 km2 study area, eddies occurred at rates of 1 and 4 day−1 in winter and summer, respectively. Most were less than 5 h in duration, smaller than 4 km in diameter, and rotated less than once over their lifespan; 60% of the eddies formed along the eastern edge of study area, adjacent to Wasque Shoal, and moved westward into the interior, often with relative vorticity greater than f. Eddy generation was linked to vortex stretching on the ebb and flood tide as well as the interaction of the spatially variable tide and the wind-driven currents; however, these features had complex patterns of surface divergence and stretching. Eddies located away from Wasque Shoal were related to the movement of wind-driven surface currents, as wind direction controlled where eddies formed as well as density effects. Using an analysis of particles advected within the radar-based surface currents, the observed eddies were found to be generally leaky, losing 60%–80% of particles over their lifespan, but still more retentive than the background flow. As a result, the combined translation and rotational effects of the observed eddies were an important source of lateral exchange for surface waters over the inner shelf.
    Description: The HF radar data utilized here were obtained using internal funding from the Woods Hole Oceanographic Institution. The analysis was supported by NSF OCE Grant 1332646.
    Description: 2017-02-19
    Keywords: Geographic location/entity ; Continental shelf/slope ; Circulation/ Dynamics ; Currents ; Eddies ; Observational techniques and algorithms ; Radars/Radar observations
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    When an eddy encounters shelf-slope topography (2016)
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution September 2016
    Description: Eddies in the ocean move westwards. Those shed by western boundary currents must then interact with continental shelf-slope topography at the western boundary. The presence of other eddies and mean lows complicates this simple picture, yet satellite images show that mesoscale eddies translating near the shelfbreak routinely affect the continental shelves of the Mid-Atlantic Bight, the Gulf of Mexico etc. The consequent cross-shelfbreak transports are currently of unknown importance to shelf budgets of heat, salt and volume. Thus motivated, this thesis uses idealized continuously stratified numerical experiments to explore eddy-slope interactions under four questions: 1. Can the continental slope prevent an eddy from reaching the shelfbreak? 2. What is the structure of the eddy-driven offshore low? 3. How is the continental shelf affected by an eddy at the shelfbreak? 4. Given surface observations, can one estimate the volume of water transported across the shelfbreak? The experiments show that the efficiency of Rossby wave radiation from the eddy controls whether it can cross isobaths: by radiating energy the eddy becomes shallow enough to move into shallower water. For wide continental slopes, relative to an eddy diameter, a slope can prevent an anticyclone from reaching the shelfbreak by shutting down such radiation. For narrow continental slopes, the interaction repeatedly produces dipoles, whose cyclonic halves contain shelf-slope water stacked over eddy water. The formation of such cyclones is explained. Then, the structure of shelf lows forced by the eddy are studied: their vertical structures are rationalized and scalings derived for their cross-isobath scales; for example, the extent to which the eddy influences the shelf. A recipe for estimating cross-isobath transports based on eddy surface properties is put forward. Finally, the findings are tested against observations in the Middle Atlantic Bight of the northeastern United States.
    Description: I acknowledge high-performance computing support from Yellowstone (ark:/85065/d7wd3xhc) provided by NCAR’s Computational and Information Systems Laboratory, sponsored by the National Science Foundation. The research presented here was funded by National Science Foundation grants OCE-1059632 and OCE-1433953. Funding support from the Academic Programs Oice, WHOI is also gratefully acknowledged.
    Keywords: Eddies ; Oceanography
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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    Production and destruction of eddy kinetic energy in forced submesoscale eddy-resolving simulations (2016)
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ocean Modelling 105 (2016): 44-59, doi:10.1016/j.ocemod.2016.07.002.
    Description: We study the production and dissipation of the eddy kinetic energy (EKE) in a submesoscale eddy field forced with downfront winds using the Process Study Ocean Model (PSOM) with a horizontal grid resolution of 0.5 km. We simulate an idealized 100 m deep mixed-layer front initially in geostrophic balance with a jet in a domain that permits eddies within a range of O(1km–100 km). The vertical eddy viscosities and the dissipation are parameterized using four different subgrid vertical mixing parameterizations: the k−ϵ,k−ϵ, the KPP, and two different constant eddy viscosity and diffusivity profiles with a magnitude of O(10−2m2s−1) in the mixed layer. Our study shows that strong vertical eddy viscosities near the surface reduce the parameterized dissipation, whereas strong vertical eddy diffusivities reduce the lateral buoyancy gradients and consequently the rate of restratification by mixed-layer instabilities (MLI). Our simulations show that near the surface, the spatial variability of the dissipation along the periphery of the eddies depends on the relative alignment of the ageostrophic and geostrophic shear. Analysis of the resolved EKE budgets in the frontal region from the simulations show important similarities between the vertical structure of the EKE budget produced by the k−ϵk−ϵ and KPP parameterizations, and earlier LES studies. Such an agreement is absent in the simulations using constant eddy-viscosity parameterizations.
    Description: This research was supported by the Office of Naval Research Grant (N00014-09-1-0196).
    Description: 2018-07-16
    Keywords: Submesoscale ; Mixed layer ; Dissipation ; Eddies ; Restratification ; Vertical mixing
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    A theory of the wind-driven Beaufort Gyre variability (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3263-3278, doi:10.1175/JPO-D-16-0091.1.
    Description: The halocline of the Beaufort Gyre varies significantly on interannual to decadal time scales, affecting the freshwater content (FWC) of the Arctic Ocean. This study explores the role of eddies in the Ekman-driven gyre variability. Following the transformed Eulerian-mean paradigm, the authors develop a theory that links the FWC variability to the stability of the large-scale gyre, defined as the inverse of its equilibration time. The theory, verified with eddy-resolving numerical simulations, demonstrates that the gyre stability is explicitly controlled by the mesoscale eddy diffusivity. An accurate representation of the halocline dynamics requires the eddy diffusivity of 300 ± 200 m2 s−1, which is lower than what is used in most low-resolution climate models. In particular, on interannual and longer time scales the eddy fluxes and the Ekman pumping provide equally important contributions to the FWC variability. However, only large-scale Ekman pumping patterns can significantly alter the FWC, with spatially localized perturbations being an order of magnitude less efficient. Lastly, the authors introduce a novel FWC tendency diagnostic—the Gyre Index—that can be conveniently calculated using observations located only along the gyre boundaries. Its strong predictive capabilities, assessed in the eddy-resolving model forced by stochastic winds, suggest that the Gyre Index would be of use in interpreting FWC evolution in observations as well as in numerical models.
    Description: GEMacknowledges the support from theHowland Postdoctoral Program Fund at WHOI and the Stanback Fellowship Fund at Caltech.MAS was supported by NSF Grants PLR-1415489 and OCE-1232389. AFT acknowledges support from NASA Award NNN12AA01C.
    Description: 2017-04-20
    Keywords: Arctic ; Eddies ; Ekman pumping/transport ; Large-scale motions ; Ocean circulation ; Stability
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  • 65
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    Evolution of the eddy field in the Arctic Ocean's Canada Basin, 2005–2015 (2016)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 43 (2016): 8106–8114, doi:10.1002/2016GL069671.
    Description: The eddy field across the Arctic Ocean's Canada Basin is analyzed using Ice-Tethered Profiler (ITP) and moored measurements of temperature, salinity, and velocity spanning 2005 to 2015. ITPs encountered 243 eddies, 98% of which were anticyclones, with approximately 70% of these having anomalously cold cores. The spatially and temporally varying eddy field is analyzed accounting for sampling biases in the unevenly distributed ITP data and caveats in detection methods. The highest concentration of eddies was found in the western and southern portions of the basin, close to topographic margins and boundaries of the Beaufort Gyre. The number of lower halocline eddies approximately doubled from 2005–2012 to 2013–2014. The increased eddy density suggests more active baroclinic instability of the Beaufort Gyre that releases available potential energy to balance the wind energy input; this may stabilize the Gyre spin-up and associated freshwater increase.
    Description: National Science Foundation Division of Polar Programs Grant Number: 1350046
    Description: 2017-02-03
    Keywords: Arctic Ocean ; Eddies ; Beaufort Gyre
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    Seasonal and interannual variations of Irminger ring formation and boundary–interior heat exchange in FLAME (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1717-1734, doi:10.1175/JPO-D-15-0124.1.
    Description: The contribution of warm-core anticyclones shed by the Irminger Current off West Greenland, known as Irminger rings, to the restratification of the upper layers of the Labrador Sea is investigated in the 1/12° Family of Linked Atlantic Models Experiment (FLAME) model. The model output, covering the 1990–2004 period, shows strong similarities to observations of the Irminger Current as well as ring observations at a mooring located offshore of the eddy formation region in 2007–09. An analysis of fluxes in the model shows that while the majority of heat exchange with the interior indeed occurs at the site of the Irminger Current instability, the contribution of the coherent Irminger rings is modest (18%). Heat is provided to the convective region mainly through noncoherent anomalies and enhanced local mixing by the rings facilitating further exchange between the boundary and interior. The time variability of the eddy kinetic energy and the boundary to interior heat flux in the model are strongly correlated to the density gradient between the dense convective region and the more buoyant boundary current. In FLAME, the density variations of the boundary current are larger than those of the convective region, thereby largely controlling changes in lateral fluxes. Synchronous long-term trends in temperature in the boundary and the interior over the 15-yr simulation suggest that the heat flux relative to the temperature of the interior is largely steady on these time scales.
    Description: The authors were supported in this work by the U.S. National Science Foundation.
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Anticyclones ; Boundary currents ; Convection ; Eddies ; Fluxes
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    Models and simulations of tracer dispersal by mid-ocean mesoscale eddies (2016)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2022-05-26
    Description: Haidvogel and Keffer (1984) have examined the stirring and mixing of a passive tracer in a turbulent mesoscale eddy field for environmental parameters characteristic of a homogeneous mid-ocean region. This study utilized two numerical models, based respectively on the barotropic vorticity and advective-diffusive equations, to simulate the evolving mid-ocean eddy field and the associated dispersion of an embedded tracer spot. Here, these models are described in detail, and the full suite of tracer release simulations are shown in the form of contour plots.
    Description: Funding was provided by the National Science Foundation under Grant No. OCE81-09486, and the Center for Analysis of Marine Systems (CAMS).
    Keywords: Ocean currents ; Eddies
    Repository Name: Woods Hole Open Access Server
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    Single-base pair differences in a shared motif determine differential Rhodopsin expression (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: The final identity and functional properties of a neuron are specified by terminal differentiation genes, which are controlled by specific motifs in compact regulatory regions. To determine how these sequences integrate inputs from transcription factors that specify cell types, we compared the regulatory mechanism of Drosophila Rhodopsin genes that are expressed in subsets of photoreceptors to that of phototransduction genes that are expressed broadly, in all photoreceptors. Both sets of genes share an 11-base pair (bp) activator motif. Broadly expressed genes contain a palindromic version that mediates expression in all photoreceptors. In contrast, each Rhodopsin exhibits characteristic single-bp substitutions that break the symmetry of the palindrome and generate activator or repressor motifs critical for restricting expression to photoreceptor subsets. Sensory neuron subtypes can therefore evolve through single-bp changes in short regulatory motifs, allowing the discrimination of a wide spectrum of stimuli.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rister, Jens -- Razzaq, Ansa -- Boodram, Pamela -- Desai, Nisha -- Tsanis, Cleopatra -- Chen, Hongtao -- Jukam, David -- Desplan, Claude -- K99EY023995/EY/NEI NIH HHS/ -- R01 EY13010/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1258-61. doi: 10.1126/science.aab3417.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Developmental Genetics, Department of Biology, New York University, 100 Washington Square East, New York, NY 10003-6688, USA. ; Center for Developmental Genetics, Department of Biology, New York University, 100 Washington Square East, New York, NY 10003-6688, USA. cd38@nyu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785491" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Pairing ; Drosophila Proteins/*genetics ; Drosophila melanogaster/genetics/growth & development ; *Gene Expression Regulation, Developmental ; Mutation ; Photoreceptor Cells, Invertebrate/*physiology ; Promoter Regions, Genetic/*genetics ; Rhodopsin/*genetics ; Transcription Factors/metabolism ; Vision, Ocular/*genetics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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    Pollution threatens migratory shorebirds (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tang, Zhenwu -- Huang, Qifei -- Nie, Zhiqiang -- Yang, Yufei -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1176-7. doi: 10.1126/science.350.6265.1176-c.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Environmental Research Academy, North China Electric Power University, Beijing, 102206, China. ; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China. huangqf@craes.org.cn. ; State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785469" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Migration ; Animals ; *Birds
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    Protected areas and global conservation of migratory birds (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: Migratory species depend on a suite of interconnected sites. Threats to unprotected links in these chains of sites are driving rapid population declines of migrants around the world, yet the extent to which different parts of the annual cycle are protected remains unknown. We show that just 9% of 1451 migratory birds are adequately covered by protected areas across all stages of their annual cycle, in comparison with 45% of nonmigratory birds. This discrepancy is driven by protected area placement that does not cover the full annual cycle of migratory species, indicating that global efforts toward coordinated conservation planning for migrants are yet to bear fruit. Better-targeted investment and enhanced coordination among countries are needed to conserve migratory species throughout their migratory cycle.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Runge, Claire A -- Watson, James E M -- Butchart, Stuart H M -- Hanson, Jeffrey O -- Possingham, Hugh P -- Fuller, Richard A -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1255-8. doi: 10.1126/science.aac9180.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Geography, Planning and Environmental Management, University of Queensland, Brisbane, QLD, 4072, Australia. National Center for Ecological Analysis and Synthesis (NCEAS), University of California, Santa Barbara, Santa Barbara, CA 93101, USA. claire.runge@uqconnect.edu.au. ; School of Geography, Planning and Environmental Management, University of Queensland, Brisbane, QLD, 4072, Australia. Global Conservation Program, Wildlife Conservation Society, New York, NY, USA. ; BirdLife International, Wellbrook Court, Cambridge CB3 0NA, UK. ; School of Biological Sciences, University of Queensland, Brisbane, QLD 4072, Australia. ; School of Biological Sciences, University of Queensland, Brisbane, QLD 4072, Australia. Department of Life Sciences, Imperial College London, Silwood Park, Ascot, Berkshire SL5 7PY, England, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785490" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Migration ; Animals ; *Birds ; Breeding ; *Conservation of Natural Resources ; Population Dynamics ; Seasons
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    The final countdown (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Underwood, Emily -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1188-90. doi: 10.1126/science.350.6265.1188.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785475" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/blood/genetics/*physiology ; Animals ; Biological Clocks/genetics/*physiology ; Biomarkers/blood/metabolism ; DNA/genetics ; DNA Methylation ; Epigenesis, Genetic ; Humans ; Mice ; Rats ; Telomere Homeostasis
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    HIV-specific B cell response in patients with broadly neutralizing serum activity (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scheid, Johannes F -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1175. doi: 10.1126/science.aad7133.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Massachusetts General Hospital, Boston, MA 02114, USA. The Rockefeller University, New York, NY 10021, USA. fscheid@partners.org.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785466" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Monoclonal/genetics/immunology/isolation & purification ; Antibodies, Neutralizing/genetics/*immunology/isolation & purification ; B-Lymphocytes/*immunology ; Cell Separation/methods ; HIV Antibodies/genetics/*immunology/isolation & purification ; HIV Infections/*blood ; Humans ; Immunologic Memory ; Mice ; env Gene Products, Human Immunodeficiency Virus/*immunology
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    Putting Off the Inevitable (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hurtley, Stella -- Roberts, Leslie -- Ray, L Bryan -- Purnell, Beverly A -- Ash, Caroline -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1180-1. doi: 10.1126/science.350.6265.1180.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785472" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/*genetics ; Animals ; Health ; Humans ; Mitochondria/metabolism ; Stem Cells/physiology ; Telomere/*genetics ; *Telomere Homeostasis
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    The mechanistic pathways of trophic interactions in human-occupied landscapes (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ford, Adam T -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1175. doi: 10.1126/science.aad7134.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Integrative Biology at the University of Guelph, Guelph, Ontario, Canada. adamford@uoguelph.ca.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785465" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Animals, Wild ; Antelopes ; *Dogs ; Endangered Species ; *Food Chain ; *Grassland ; *Herbivory ; Humans ; Plants
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    Imbalanced OPA1 processing and mitochondrial fragmentation cause heart failure in mice (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: Mitochondrial morphology is shaped by fusion and division of their membranes. Here, we found that adult myocardial function depends on balanced mitochondrial fusion and fission, maintained by processing of the dynamin-like guanosine triphosphatase OPA1 by the mitochondrial peptidases YME1L and OMA1. Cardiac-specific ablation of Yme1l in mice activated OMA1 and accelerated OPA1 proteolysis, which triggered mitochondrial fragmentation and altered cardiac metabolism. This caused dilated cardiomyopathy and heart failure. Cardiac function and mitochondrial morphology were rescued by Oma1 deletion, which prevented OPA1 cleavage. Feeding mice a high-fat diet or ablating Yme1l in skeletal muscle restored cardiac metabolism and preserved heart function without suppressing mitochondrial fragmentation. Thus, unprocessed OPA1 is sufficient to maintain heart function, OMA1 is a critical regulator of cardiomyocyte survival, and mitochondrial morphology and cardiac metabolism are intimately linked.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wai, Timothy -- Garcia-Prieto, Jaime -- Baker, Michael J -- Merkwirth, Carsten -- Benit, Paule -- Rustin, Pierre -- Ruperez, Francisco Javier -- Barbas, Coral -- Ibanez, Borja -- Langer, Thomas -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):aad0116. doi: 10.1126/science.aad0116.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Genetics, University of Cologne, 50674 Cologne, Germany. Max-Planck-Institute for Biology of Aging, Cologne, Germany. ; Myocardial Pathophysiology Area, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain. ; Institute for Genetics, University of Cologne, 50674 Cologne, Germany. ; INSERM UMR 1141, Hopital Robert Debre, Paris, France. Universite Paris 7, Faculte de Medecine Denis Diderot, Paris, France. ; Centre for Metabolomics and Bioanalysis (CEMBIO), Faculty of Pharmacy, Universidad San Pablo CEU, Campus Monteprincipe, Boadilla del Monte, 28668 Madrid, Spain. ; Myocardial Pathophysiology Area, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain. Department of Cardiology, Instituto de Investigacion Sanitaria (IIS), Fundacion Jimenez Diaz Hospital, Madrid, Spain. thomas.langer@uni-koeln.de bibanez@cnic.es. ; Institute for Genetics, University of Cologne, 50674 Cologne, Germany. Max-Planck-Institute for Biology of Aging, Cologne, Germany. Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany. thomas.langer@uni-koeln.de bibanez@cnic.es.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785494" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cardiomyopathy, Dilated/genetics/metabolism/pathology ; Diet, High-Fat ; Embryonic Development ; Female ; GTP Phosphohydrolases ; Gene Deletion ; Heart/embryology ; Heart Failure/genetics/*metabolism/pathology ; Male ; Metalloendopeptidases/genetics ; Metalloproteases/genetics/metabolism ; Mice ; Mice, Knockout ; Mitochondria, Heart/*metabolism/ultrastructure ; *Mitochondrial Degradation ; *Mitochondrial Dynamics ; Mitochondrial Proteins/genetics/metabolism ; Muscle, Skeletal/enzymology ; Myocardium/*metabolism/pathology ; Myocytes, Cardiac/enzymology/pathology ; Proteolysis
    Print ISSN: 0036-8075
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    Mitochondrial dysfunction and longevity in animals: Untangling the knot (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: Mitochondria generate adenosine 5'-triphosphate (ATP) and are a source of potentially toxic reactive oxygen species (ROS). It has been suggested that the gradual mitochondrial dysfunction that is observed to accompany aging could in fact be causal to the aging process. Here we review findings that suggest that age-dependent mitochondrial dysfunction is not sufficient to limit life span. Furthermore, mitochondrial ROS are not always deleterious and can even stimulate pro-longevity pathways. Thus, mitochondrial dysfunction plays a complex role in regulating longevity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, Ying -- Hekimi, Siegfried -- MOP-114891/Canadian Institutes of Health Research/Canada -- MOP-123295/Canadian Institutes of Health Research/Canada -- MOP-97869/Canadian Institutes of Health Research/Canada -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1204-7. doi: 10.1126/science.aac4357.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada. ; Department of Biology, McGill University, Montreal, Quebec H3A 1B1, Canada. siegfried.hekimi@mcgill.ca.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785479" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/*metabolism ; Animals ; Caenorhabditis elegans Proteins/genetics ; Electron Transport/genetics ; Electron Transport Complex III/genetics ; Longevity/genetics/*physiology ; Mice ; Mice, Knockout ; Mitochondria/genetics/*metabolism ; Point Mutation ; Reactive Oxygen Species/*metabolism
    Print ISSN: 0036-8075
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    Teamwork: The tumor cell edition (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cleary, Allison S -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1174-5. doi: 10.1126/science.aad7103.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Pennsylvania State University College of Medicine, Hershey PA 17078, USA. acleary@hmc.psu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785463" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breast Neoplasms/genetics/metabolism/*pathology ; Clone Cells/metabolism/pathology ; Female ; Mammary Neoplasms, Experimental/genetics/metabolism/*pathology ; Mice ; Neoplasms, Basal Cell/genetics/metabolism/pathology ; Wnt1 Protein/genetics/*metabolism ; ras Proteins/genetics/metabolism
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    Healthy aging: The ultimate preventative medicine (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: Age is the greatest risk factor for nearly every major cause of mortality in developed nations. Despite this, most biomedical research focuses on individual disease processes without much consideration for the relationships between aging and disease. Recent discoveries in the field of geroscience, which aims to explain biological mechanisms of aging, have provided insights into molecular processes that underlie biological aging and, perhaps more importantly, potential interventions to delay aging and promote healthy longevity. Here we describe some of these advances, along with efforts to move geroscience from the bench to the clinic. We also propose that greater emphasis should be placed on research into basic aging processes, because interventions that slow aging will have a greater effect on quality of life compared with disease-specific approaches.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kaeberlein, Matt -- Rabinovitch, Peter S -- Martin, George M -- P30AG013280/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1191-3. doi: 10.1126/science.aad3267.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, University of Washington, Seattle, WA 98195, USA. kaeber@uw.edu. ; Department of Pathology, University of Washington, Seattle, WA 98195, USA. ; Department of Pathology, University of Washington, Seattle, WA 98195, USA. Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785476" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Animals ; Diet ; Exercise ; Geriatrics/*trends ; *Health ; Humans ; Mortality ; Preventive Medicine/*trends ; Risk Factors ; TOR Serine-Threonine Kinases/antagonists & inhibitors ; Translational Medical Research/trends
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    Death-defying experiments (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cohen, Jon -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1186-7. doi: 10.1126/science.350.6265.1186.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785474" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Caenorhabditis elegans/genetics/physiology ; Caenorhabditis elegans Proteins/genetics/physiology ; Caloric Restriction ; Death ; Humans ; Hydra/genetics/physiology ; Longevity/genetics/*physiology ; Mice ; Mutation ; Phosphatidylinositol 3-Kinases/genetics/physiology
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    Parkin-mediated mitophagy directs perinatal cardiac metabolic maturation in mice (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: In developing hearts, changes in the cardiac metabolic milieu during the perinatal period redirect mitochondrial substrate preference from carbohydrates to fatty acids. Mechanisms responsible for this mitochondrial plasticity are unknown. Here, we found that PINK1-Mfn2-Parkin-mediated mitophagy directs this metabolic transformation in mouse hearts. A mitofusin (Mfn) 2 mutant lacking PINK1 phosphorylation sites necessary for Parkin binding (Mfn2 AA) inhibited mitochondrial Parkin translocation, suppressing mitophagy without impairing mitochondrial fusion. Cardiac Parkin deletion or expression of Mfn2 AA from birth, but not after weaning, prevented postnatal mitochondrial maturation essential to survival. Five-week-old Mfn2 AA hearts retained a fetal mitochondrial transcriptional signature without normal increases in fatty acid metabolism and mitochondrial biogenesis genes. Myocardial fatty acylcarnitine levels and cardiomyocyte respiration induced by palmitoylcarnitine were concordantly depressed. Thus, instead of transcriptional reprogramming, fetal cardiomyocyte mitochondria undergo perinatal Parkin-mediated mitophagy and replacement by mature adult mitochondria. Mitophagic mitochondrial removal underlies developmental cardiomyocyte mitochondrial plasticity and metabolic transitioning of perinatal hearts.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747105/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747105/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gong, Guohua -- Song, Moshi -- Csordas, Gyorgy -- Kelly, Daniel P -- Matkovich, Scot J -- Dorn, Gerald W 2nd -- HL058493/HL/NHLBI NIH HHS/ -- HL108943/HL/NHLBI NIH HHS/ -- HL122124/HL/NHLBI NIH HHS/ -- HL128071/HL/NHLBI NIH HHS/ -- HL59888/HL/NHLBI NIH HHS/ -- R01 HL058493/HL/NHLBI NIH HHS/ -- R01 HL059888/HL/NHLBI NIH HHS/ -- R01 HL108943/HL/NHLBI NIH HHS/ -- R01 HL128071/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):aad2459. doi: 10.1126/science.aad2459. Epub 2015 Dec 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Pharmacogenomics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA. ; Department of Pathology, Anatomy, and Cell Biology, Thomas Jefferson University, Philadelphia, PA, USA. ; Center for Metabolic Origins of Disease, Cardiovascular Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, FL, USA. ; Center for Pharmacogenomics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA. gdorn@dom.wustl.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785495" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cellular Reprogramming ; GTP Phosphohydrolases/genetics/metabolism ; Heart/*embryology ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mitochondria, Heart/metabolism/*physiology/ultrastructure ; Mitochondrial Degradation/genetics/*physiology ; Mitochondrial Dynamics ; Myocardium/*metabolism/ultrastructure ; Myocytes, Cardiac/metabolism/ultrastructure ; Protein Kinases/metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism
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    Stem cells and healthy aging (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: Research into stem cells and aging aims to understand how stem cells maintain tissue health, what mechanisms ultimately lead to decline in stem cell function with age, and how the regenerative capacity of somatic stem cells can be enhanced to promote healthy aging. Here, we explore the effects of aging on stem cells in different tissues. Recent research has focused on the ways that genetic mutations, epigenetic changes, and the extrinsic environmental milieu influence stem cell functionality over time. We describe each of these three factors, the ways in which they interact, and how these interactions decrease stem cell health over time. We are optimistic that a better understanding of these changes will uncover potential strategies to enhance stem cell function and increase tissue resiliency into old age.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Goodell, Margaret A -- Rando, Thomas A -- P01 AG036695/AG/NIA NIH HHS/ -- R01 AG047820/AG/NIA NIH HHS/ -- R01 AR062185/AR/NIAMS NIH HHS/ -- R37 AG023806/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1199-204. doi: 10.1126/science.aab3388.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Stem Cells and Regenerative Medicine Center, Center for Cell and Gene Therapy, and Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA. goodell@bcm.edu rando@stanford.edu. ; Glenn Center for the Biology of Aging and Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA 94305, USA, and Center for Regenerative Rehabilitation, Veterans Administration Palo Alto Health Care System, Palo Alto, CA 94304, USA. goodell@bcm.edu rando@stanford.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785478" target="_blank"〉PubMed〈/a〉
    Keywords: Adult Stem Cells/*physiology ; Aging/*physiology ; Animals ; Cell Aging ; Epigenesis, Genetic ; Genetic Drift ; *Health ; Humans ; Mice ; Mutation ; Organ Specificity ; Selection, Genetic
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    METABOLISM. Mitochondria shape cardiac metabolism (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gottlieb, Roberta A -- Bernstein, Daniel -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1162-3. doi: 10.1126/science.aad8222.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA. roberta.gottlieb@cshs.org. ; Department of Pediatrics, Stanford University, Palo Alto, CA 94304, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785456" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Female ; Heart/*embryology ; Heart Failure/*metabolism ; Male ; Mitochondria, Heart/*metabolism/*physiology ; Mitochondrial Degradation/*physiology ; *Mitochondrial Dynamics ; Myocardium/*metabolism ; Ubiquitin-Protein Ligases/*metabolism
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    Bringing back the aurochs (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stokstad, Erik -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1144-7. doi: 10.1126/science.350.6265.1144.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785454" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Breeding ; Cattle ; Europe ; *Extinction, Biological
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    Why we outlive our pets (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Grimm, David -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1182-5. doi: 10.1126/science.350.6265.1182.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785473" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Animals ; Body Weight ; Cats ; Dogs ; Humans ; *Longevity ; Pets/*physiology
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    Born to rewild (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kintisch, Eli -- New York, N.Y. -- Science. 2015 Dec 4;350(6265):1148-51. doi: 10.1126/science.350.6265.1148. Epub 2015 Dec 3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26785455" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bison ; *Conservation of Natural Resources ; *Herbivory ; *Parks, Recreational ; *Permafrost ; Siberia ; *Taiga
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    INFECTIOUS DISEASES. Yellow fever outbreak triggers vaccine alarm (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-04-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Apr 8;352(6282):128-9. doi: 10.1126/science.352.6282.128. Epub 2016 Apr 7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27124428" target="_blank"〉PubMed〈/a〉
    Keywords: Aedes/virology ; Angola/epidemiology ; Animals ; Chick Embryo ; Disease Outbreaks/*prevention & control ; Humans ; Vaccination/statistics & numerical data ; World Health Organization ; Yellow Fever/*epidemiology/*prevention & control ; Yellow Fever Vaccine/*administration & dosage
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    The microbial death clock (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-03-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Mar 11;351(6278):1143. doi: 10.1126/science.351.6278.1143.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26965608" target="_blank"〉PubMed〈/a〉
    Keywords: Acinetobacter/*growth & development ; Animals ; *Death ; Humans ; Mice ; Moraxellaceae/*growth & development ; Rhizobiaceae/*growth & development ; Time Factors
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    INFECTIOUS DISEASES. Refugee crisis brings new health challenges (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-04-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kupferschmidt, Kai -- New York, N.Y. -- Science. 2016 Apr 22;352(6284):391-2. doi: 10.1126/science.352.6284.391. Epub 2016 Apr 21.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27102452" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Communicable Diseases/diagnosis/*epidemiology/etiology ; Echinococcosis/diagnosis/epidemiology ; Echinococcus/isolation & purification ; *Emigration and Immigration ; Europe ; Humans ; Mass Screening ; Methicillin Resistance ; Methicillin-Resistant Staphylococcus aureus/isolation & purification ; *Refugees
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    NEUROSCIENCE. A satiating signal (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-03-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schwartz, Gary J -- DK 020541/DK/NIDDK NIH HHS/ -- DK 026687/DK/NIDDK NIH HHS/ -- DK 105441/DK/NIDDK NIH HHS/ -- New York, N.Y. -- Science. 2016 Mar 18;351(6279):1268-9. doi: 10.1126/science.aaf5216. Epub 2016 Mar 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departments of Medicine & Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA. gary.schwartz@einstein.yu.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26989239" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Energy Metabolism/*physiology ; Feeding Behavior/*physiology ; Hyperphagia/*genetics ; Male ; N-Acetylglucosaminyltransferases/*physiology ; Paraventricular Hypothalamic Nucleus/*physiology
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    Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-02-26
    Description: In most animal species, juvenile growth is marked by an exponential gain in body weight and size. Here we show that the microbiota of infant mice sustains both weight gain and longitudinal growth when mice are fed a standard laboratory mouse diet or a nutritionally depleted diet. We found that the intestinal microbiota interacts with the somatotropic hormone axis to drive systemic growth. Using monocolonized mouse models, we showed that selected lactobacilli promoted juvenile growth in a strain-dependent manner that recapitulated the microbiota's effect on growth and the somatotropic axis. These findings show that the host's microbiota supports juvenile growth. Moreover, we discovered that lactobacilli strains buffered the adverse effects of chronic undernutrition on the postnatal growth of germ-free mice.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schwarzer, Martin -- Makki, Kassem -- Storelli, Gilles -- Machuca-Gayet, Irma -- Srutkova, Dagmar -- Hermanova, Petra -- Martino, Maria Elena -- Balmand, Severine -- Hudcovic, Tomas -- Heddi, Abdelaziz -- Rieusset, Jennifer -- Kozakova, Hana -- Vidal, Hubert -- Leulier, Francois -- New York, N.Y. -- Science. 2016 Feb 19;351(6275):854-7. doi: 10.1126/science.aad8588.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. Laboratory of Gnotobiology, Institute of Microbiology of the Czech Academy of Sciences, v. v. i., Novy Hradek, Czech Republic. ; Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. Laboratoire CarMeN, Universite Lyon 1, Unite Mixte de Recherche INSERM U-1060 et INRA U-1397, Faculte de Medecine Lyon-Sud, Chemin du Grand Revoyet, 69600 Oullins, France. ; Institut de Genomique Fonctionnelle de Lyon, Universite de Lyon, Ecole Normale Superieure de Lyon, Centre National de la Recherche Scientifique, Universite Claude Bernard Lyon 1, Unite Mixte de Recherche 5242, 46 Allee d'Italie, 69364 Lyon Cedex 07, France. ; Laboratory of Gnotobiology, Institute of Microbiology of the Czech Academy of Sciences, v. v. i., Novy Hradek, Czech Republic. ; UMR203 BF2I, Biologie Fonctionnelle Insectes et Interactions, Universite de Lyon, INRA, INSA-Lyon, F-69621 Villeurbanne, France. ; Laboratoire CarMeN, Universite Lyon 1, Unite Mixte de Recherche INSERM U-1060 et INRA U-1397, Faculte de Medecine Lyon-Sud, Chemin du Grand Revoyet, 69600 Oullins, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26912894" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Weight/*physiology ; Diet ; Femur/growth & development ; Gastrointestinal Microbiome/*physiology ; Lactobacillus plantarum/*physiology ; Malnutrition/*microbiology/*physiopathology ; Mice ; Mice, Inbred BALB C ; Weight Gain/*physiology
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    Ubiquitinated Fancd2 recruits Fan1 to stalled replication forks to prevent genome instability (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-01-23
    Description: Mono-ubiquitination of Fancd2 is essential for repairing DNA interstrand cross-links (ICLs), but the underlying mechanisms are unclear. The Fan1 nuclease, also required for ICL repair, is recruited to ICLs by ubiquitinated (Ub) Fancd2. This could in principle explain how Ub-Fancd2 promotes ICL repair, but we show that recruitment of Fan1 by Ub-Fancd2 is dispensable for ICL repair. Instead, Fan1 recruitment--and activity--restrains DNA replication fork progression and prevents chromosome abnormalities from occurring when DNA replication forks stall, even in the absence of ICLs. Accordingly, Fan1 nuclease-defective knockin mice are cancer-prone. Moreover, we show that a Fan1 variant in high-risk pancreatic cancers abolishes recruitment by Ub-Fancd2 and causes genetic instability without affecting ICL repair. Therefore, Fan1 recruitment enables processing of stalled forks that is essential for genome stability and health.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770513/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770513/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lachaud, Christophe -- Moreno, Alberto -- Marchesi, Francesco -- Toth, Rachel -- Blow, J Julian -- Rouse, John -- WT096598MA/Wellcome Trust/United Kingdom -- Medical Research Council/United Kingdom -- New York, N.Y. -- Science. 2016 Feb 19;351(6275):846-9. doi: 10.1126/science.aad5634. Epub 2016 Jan 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. ; Centre for Gene Regulation and Expression, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. ; School of Veterinary Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Bearsden Road, Glasgow G61 1QH, UK. ; Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, Sir James Black Centre, University of Dundee, Dundee DD1 5EH, Scotland, UK. j.rouse@dundee.ac.uk.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797144" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; *Chromosome Aberrations ; DNA Repair ; *DNA Replication ; Endodeoxyribonucleases/genetics/*metabolism ; Fanconi Anemia Complementation Group D2 Protein/genetics/*metabolism ; Female ; Gene Knock-In Techniques ; Genetic Predisposition to Disease ; Genomic Instability/*genetics ; Liver Neoplasms/genetics/pathology ; Lung Neoplasms/genetics/pathology ; Lymphoma/genetics/pathology ; Male ; Mice ; Mice, Inbred C57BL ; Molecular Sequence Data ; Pancreatic Neoplasms/*genetics ; *Ubiquitination
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    The nutrient sensor OGT in PVN neurons regulates feeding (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-03-19
    Description: Maintaining energy homeostasis is crucial for the survival and health of organisms. The brain regulates feeding by responding to dietary factors and metabolic signals from peripheral organs. It is unclear how the brain interprets these signals. O-GlcNAc transferase (OGT) catalyzes the posttranslational modification of proteins by O-GlcNAc and is regulated by nutrient access. Here, we show that acute deletion of OGT from alphaCaMKII-positive neurons in adult mice caused obesity from overeating. The hyperphagia derived from the paraventricular nucleus (PVN) of the hypothalamus, where loss of OGT was associated with impaired satiety. These results identify O-GlcNAcylation in alphaCaMKII neurons of the PVN as an important molecular mechanism that regulates feeding behavior.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817221/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817221/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lagerlof, Olof -- Slocomb, Julia E -- Hong, Ingie -- Aponte, Yeka -- Blackshaw, Seth -- Hart, Gerald W -- Huganir, Richard L -- N01-HV-00240/HV/NHLBI NIH HHS/ -- P01 HL107153/HL/NHLBI NIH HHS/ -- P01HL107153/HL/NHLBI NIH HHS/ -- R01 DK061671/DK/NIDDK NIH HHS/ -- R01 NS036715/NS/NINDS NIH HHS/ -- R01DK6167/DK/NIDDK NIH HHS/ -- R01NS036715/NS/NINDS NIH HHS/ -- Intramural NIH HHS/ -- New York, N.Y. -- Science. 2016 Mar 18;351(6279):1293-6. doi: 10.1126/science.aad5494.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; National Institute on Drug Abuse + National Institutes of Health/Johns Hopkins University Graduate Partnership Program, Baltimore, MD 21224, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Intramural Research Program, Neuronal Circuits and Behavior Unit, National Institute on Drug Abuse, Baltimore, MD 21224, USA. ; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. ; Solomon H. Snyder Department of Neuroscience, Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. rhuganir@jhmi.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26989246" target="_blank"〉PubMed〈/a〉
    Keywords: Acetylglucosamine/metabolism ; Animals ; Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism ; Energy Metabolism/genetics/*physiology ; Feeding Behavior/*physiology ; Gene Deletion ; Homeostasis/genetics ; Hyperphagia/*genetics ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; N-Acetylglucosaminyltransferases/genetics/*physiology ; Neurons/enzymology ; Obesity/genetics ; Paraventricular Hypothalamic Nucleus/cytology/enzymology/*physiology ; Protein Processing, Post-Translational ; Satiety Response/physiology
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    Social conflict resolution regulated by two dorsal habenular subregions in zebrafish (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-04-02
    Description: When animals encounter conflict they initiate and escalate aggression to establish and maintain a social hierarchy. The neural mechanisms by which animals resolve fighting behaviors to determine such social hierarchies remain unknown. We identified two subregions of the dorsal habenula (dHb) in zebrafish that antagonistically regulate the outcome of conflict. The losing experience reduced neural transmission in the lateral subregion of dHb (dHbL)-dorsal/intermediate interpeduncular nucleus (d/iIPN) circuit. Silencing of the dHbL or medial subregion of dHb (dHbM) caused a stronger predisposition to lose or win a fight, respectively. These results demonstrate that the dHbL and dHbM comprise a dual control system for conflict resolution of social aggression.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chou, Ming-Yi -- Amo, Ryunosuke -- Kinoshita, Masae -- Cherng, Bor-Wei -- Shimazaki, Hideaki -- Agetsuma, Masakazu -- Shiraki, Toshiyuki -- Aoki, Tazu -- Takahoko, Mikako -- Yamazaki, Masako -- Higashijima, Shin-ichi -- Okamoto, Hitoshi -- New York, N.Y. -- Science. 2016 Apr 1;352(6281):87-90. doi: 10.1126/science.aac9508.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. ; Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan. ; Laboratory for Neural Computation and Adaptation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. ; National Institutes of Natural Sciences, Okazaki Institute for Integrative Bioscience, National Institute for Physiological Sciences, Aichi 444-8787, Japan. ; Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Saitama 351-0198, Japan. Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan. Laboratory for Molecular Brain Science, Department of Life Science and Medical Bioscience, Waseda University, Tokyo 162-8430, Japan. hitoshi@brain.riken.jp.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27034372" target="_blank"〉PubMed〈/a〉
    Keywords: Aggression/*physiology ; Animals ; *Conflict (Psychology) ; Habenula/*physiology ; Hierarchy, Social ; Interpeduncular Nucleus/physiology ; *Negotiating ; Synaptic Transmission ; Zebrafish
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    MARINE CONSERVATION. Shell trade pushes giant clams to the brink (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Larson, Christina -- New York, N.Y. -- Science. 2016 Jan 22;351(6271):323-4. doi: 10.1126/science.351.6271.323.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797990" target="_blank"〉PubMed〈/a〉
    Keywords: *Animal Shells ; Animals ; Art ; *Bivalvia ; China ; *Endangered Species
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    CONSERVATION. Standoff imperils Oregon refuge (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Service, Robert F -- New York, N.Y. -- Science. 2016 Jan 22;351(6271):326-7. doi: 10.1126/science.351.6271.326.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26797993" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Migration ; Animals ; Birds ; *Carps ; Cattle ; *Environmental Restoration and Remediation ; Herbivory ; *Introduced Species ; Oregon ; Violence
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    NEUROSCIENCE. Ionic control of sleep and wakefulness (2016)
    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2016-04-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Landolt, Hans-Peter -- Holst, Sebastian C -- New York, N.Y. -- Science. 2016 Apr 29;352(6285):517-8. doi: 10.1126/science.aaf8178.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Pharmacology and Toxicology, University of Zurich, Zurich, Switzerland. Zurich Center for Interdisciplinary Sleep Research, University of Zurich, Zurich, Switzerland. landolt@pharma.uzh.ch. ; Institute of Pharmacology and Toxicology, University of Zurich, Zurich, Switzerland. Zurich Center for Interdisciplinary Sleep Research, University of Zurich, Zurich, Switzerland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27126024" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cations/*metabolism ; Cerebral Cortex/*physiology ; Male ; Potassium/*metabolism ; Sleep/*physiology ; Wakefulness/*physiology
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    A beak size locus in Darwin's finches facilitated character displacement during a drought (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-04-23
    Description: Ecological character displacement is a process of morphological divergence that reduces competition for limited resources. We used genomic analysis to investigate the genetic basis of a documented character displacement event in Darwin's finches on Daphne Major in the Galapagos Islands: The medium ground finch diverged from its competitor, the large ground finch, during a severe drought. We discovered a genomic region containing the HMGA2 gene that varies systematically among Darwin's finch species with different beak sizes. Two haplotypes that diverged early in the radiation were involved in the character displacement event: Genotypes associated with large beak size were at a strong selective disadvantage in medium ground finches (selection coefficient s = 0.59). Thus, a major locus has apparently facilitated a rapid ecological diversification in the adaptive radiation of Darwin's finches.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lamichhaney, Sangeet -- Han, Fan -- Berglund, Jonas -- Wang, Chao -- Almen, Markus Sallman -- Webster, Matthew T -- Grant, B Rosemary -- Grant, Peter R -- Andersson, Leif -- New York, N.Y. -- Science. 2016 Apr 22;352(6284):470-4. doi: 10.1126/science.aad8786.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. ; Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA. ; Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden. Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX, USA. leif.andersson@imbim.uu.se.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27102486" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Beak/*anatomy & histology ; Body Size/genetics ; *Droughts ; Ecuador ; Female ; Finches/*anatomy & histology/classification/*genetics ; Genomics ; Genotype ; HMGA2 Protein/genetics ; Haplotypes ; Organ Size/genetics ; Phylogeny ; *Quantitative Trait Loci ; *Selection, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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    Response to Comment on "Single-trial spike trains in parietal cortex reveal discrete steps during decision-making" (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-03-26
    Description: Shadlen et al's Comment focuses on extrapolations of our results that were not implied or asserted in our Report. They discuss alternate analyses of average firing rates in other tasks, the relationship between neural activity and behavior, and possible extensions of the standard models we examined. Although interesting to contemplate, these points are not germane to the findings of our Report: that stepping dynamics provided a better statistical description of lateral intraparietal area spike trains than diffusion-to-bound dynamics for a majority of neurons.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Latimer, Kenneth W -- Yates, Jacob L -- Meister, Miriam L R -- Huk, Alexander C -- Pillow, Jonathan W -- New York, N.Y. -- Science. 2016 Mar 25;351(6280):1406. doi: 10.1126/science.aad3596.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. ; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Psychology, The University of Texas at Austin, Austin, TX 78712, USA. ; Center for Perceptual Systems, The University of Texas at Austin, Austin, TX 78712, USA. Institute for Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA. Department of Psychology, The University of Texas at Austin, Austin, TX 78712, USA. Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ 08544, USA. pillow@princeton.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27013724" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Choice Behavior/*physiology ; Decision Making/*physiology ; Male ; Parietal Lobe/*physiology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 99
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    Comment on "Single-trial spike trains in parietal cortex reveal discrete steps during decision-making" (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-03-26
    Description: Latimeret al (Reports, 10 July 2015, p. 184) claim that during perceptual decision formation, parietal neurons undergo one-time, discrete steps in firing rate instead of gradual changes that represent the accumulation of evidence. However, that conclusion rests on unsubstantiated assumptions about the time window of evidence accumulation, and their stepping model cannot explain existing data as effectively as evidence-accumulation models.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shadlen, Michael N -- Kiani, Roozbeh -- Newsome, William T -- Gold, Joshua I -- Wolpert, Daniel M -- Zylberberg, Ariel -- Ditterich, Jochen -- de Lafuente, Victor -- Yang, Tianming -- Roitman, Jamie -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2016 Mar 25;351(6280):1406. doi: 10.1126/science.aad3242.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute (HHMI) and Department of Neuroscience, Columbia University, New York, NY, USA. shadlen@columbia.edu. ; Center for Neural Science, New York University, New York, NY, USA. ; HHMI and Stanford University, Stanford, CA, USA. ; Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA. ; Department of Engineering, University of Cambridge, Cambridge, UK. ; HHMI and Department of Neuroscience, Columbia University, New York, NY, USA. ; Center for Neuroscience and Department of Neurobiology, Physiology, and Behavior, University of California, Davis, CA, USA. ; Institute for Neuroscience, National Autonomous University of Mexico, Queretaro, Mexico. ; Institute of Neuroscience, Chinese Academy of Sciences, Shanghai, China. ; Department of Psychology, University of Illinois at Chicago, Chicago, IL, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27013723" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Choice Behavior/*physiology ; Decision Making/*physiology ; Male ; Parietal Lobe/*physiology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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    REGENERATIVE MEDICINE. California stem cell agency plots a race to the clinic (2016)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2016-01-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Servick, Kelly -- New York, N.Y. -- Science. 2016 Jan 1;351(6268):15. doi: 10.1126/science.351.6268.15.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26721984" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; California ; Cell Differentiation ; Clinical Trials as Topic ; Drug Industry ; Embryonic Stem Cells/cytology/*transplantation ; Financing, Organized ; Humans ; Photoreceptor Cells/physiology ; Rats ; Regenerative Medicine/*economics/*trends ; Retina/cytology/physiology ; Stem Cell Research/*economics
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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