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  • Articles  (142)
  • American Geophysical Union  (111)
  • Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.  (15)
  • Oxford University Press  (14)
  • American Association for the Advancement of Science (AAAS)
  • American Chemical Society
  • 2020-2023  (142)
  • 1980-1984
  • 1925-1929
  • 2020  (142)
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  • 1
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    Vp/Vs ratio of incoming sediments off Cascadia subduction zone from analysis of controlled-source multicomponent OBS records (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 125(6), (2020): e2019JB019239, doi:10.1029/2019JB019239.
    Description: P‐to‐S‐converted waves observed in controlled‐source multicomponent ocean bottom seismometer (OBS) records were used to derive the Vp/Vs structure of Cascadia Basin sediments. We used P‐to‐S waves converted at the basement to derive an empirical function describing the average Vp/Vs of Cascadia sediments as a function of sediment thickness. We derived one‐dimensional interval Vp/Vs functions from semblance velocity analysis of S‐converted intrasediment and basement reflections, which we used to define an empirical Vp/Vs versus burial depth compaction trend. We find that seaward from the Cascadia deformation front, Vp/Vs structure offshore northern Oregon and Washington shows little variability along strike, while the structure of incoming sediments offshore central Oregon is more heterogeneous and includes intermediate‐to‐deep sediment layers of anomalously elevated Vp/Vs. These zones with elevated Vp/Vs are likely due to elevated pore fluid pressures, although layers of high sand content intercalated within a more clayey sedimentary sequence, and/or a higher content of coarser‐grained clay minerals relative to finer‐grained smectite could be contributing factors. We find that the proto‐décollement offshore central Oregon develops within the incoming sediments at a low‐permeability boundary that traps fluids in a stratigraphic level where fluid overpressure exceeds 50% of the differential pressure between the hydrostatic pressure and the lithostatic pressure. Incoming sediments with the highest estimated fluid overpressures occur offshore central Oregon where deformation of the accretionary prism is seaward vergent. Conversely, landward vergence offshore northern Oregon and Washington correlates with more moderate pore pressures and laterally homogeneous Vp/Vs functions of Cascadia Basin sediments.
    Description: This research was funded by National Science Foundation (NSF) Grant OCE‐1657237 to J. P. C, OCE‐1657839 to A. F. A. and S. H., and OCE‐1657737 to S. M. C. Data used in this study were acquired with funding from NSF Grants OCE‐1029305 and OCE‐1249353. Data used in this research were provided by instruments from the Ocean Bottom Seismic Instrument Center (http://obsic.whoi.edu, formerly OBSIP), which is funded by the NSF. OBSIC/OBSIP data are archived at the IRIS Data Management Center (http://www.iris.edu) under network code X6 (https://doi.org/10.7914/SN/X6_2012). Data processing was conducted with Emerson‐Paradigm Software package Echos licensed to Woods Hole Oceanographic Institution under Paradigm Academic Software Program and MATLAB package SeismicLab of the University of Alberta, Canada (http://seismic-lab.physics.ualberta.ca), under GNU General Public License (MATLAB® is a registered trademark of MathWorks).
    Description: 2020-11-28
    Keywords: Vp/Vs ; sediments ; ocean bottom seismometer ; Juan de Fuca plate ; Cascadia
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Labrador Sea Water transport across the Charlie-Gibbs Fracture Zone (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016068, doi:10.1029/2020JC016068.
    Description: Labrador Sea Water (LSW) is a major component of the deep limb of the Atlantic Meridional Overturning Circulation, yet LSW transport pathways and their variability lack a complete description. A portion of the LSW exported from the subpolar gyre is advected eastward along the North Atlantic Current and must contend with the Mid‐Atlantic Ridge before reaching the eastern basins of the North Atlantic. Here, we analyze observations from a mooring array and satellite altimetry, together with outputs from a hindcast ocean model simulation, to estimate the mean transport of LSW across the Charlie‐Gibbs Fracture Zone (CGFZ), a primary gateway for the eastward transport of the water mass. The LSW transport estimated from the 25‐year altimetry record is 5.3 ± 2.9 Sv, where the error represents the combination of observational variability and the uncertainty in the projection of the surface velocities to the LSW layer. Current velocities modulate the interannual to higher‐frequency variability of the LSW transport at the CGFZ, while the LSW thickness becomes important on longer time scales. The modeled mean LSW transport for 1993–2012 is higher than the estimate from altimetry, at 8.2 ± 4.1 Sv. The modeled LSW thickness decreases substantially at the CGFZ between 1996 and 2009, consistent with an observed decline in LSW volume in the Labrador Sea after 1994. We suggest that satellite altimetry and continuous hydrographic measurements in the central Labrador Sea, supplemented by profiles from Argo floats, could be sufficient to quantify the LSW transport at the CGFZ.
    Description: A. G. N. appreciates conversations with Kathy Donohue, Tom Rossby and Lisa Beal, which helped to interpret the results. J. B. P. acknowledges support from NSF through Grant OCE‐1947829. The authors thank all colleagues and ship crew involved in the R/V Meteor cruise M‐82/2 and Maria S. Merian cruise MSM‐21/2. The mooring data presented in this paper were funded by NSF through Grant OCE‐0926656.
    Description: 2021-01-03
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Are elevation and open-water conversion of salt marshes connected? (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(3), (2020): e2019GL086703, doi:10.1029/2019GL086703.
    Description: Salt marsh assessments focus on vertical metrics such as accretion or lateral metrics such as open‐water conversion, without exploration of how the dimensions are related. We exploited a novel geospatial data set to explore how elevation is related to the unvegetated‐vegetated marsh ratio (UVVR), a lateral metric, across individual marsh “units” within four estuarine‐marsh systems. We find that elevation scales consistently with the UVVR across systems, with lower elevation units demonstrating more open‐water conversion and higher UVVRs. A normalized elevation‐UVVR relationship converges across systems near the system‐mean elevation and a UVVR of 0.1, a critical threshold identified by prior studies. This indicates that open‐water conversion becomes a dominant lateral instability process at a relatively conservative elevation threshold. We then integrate the UVVR and elevation to yield lifespan estimates, which demonstrate that higher elevation marshes are more resilient to internal deterioration, with an order‐of‐magnitude longer lifespan than predicted for lower elevation marshes.
    Description: This study was supported by the USGS through the Coastal Marine Hazards/Resources Program, the National Park Service through the Natural Resource Preservation Program, and the U.S. Fish and Wildlife Service through the Science Support Partnership. Erika Lentz, Elizabeth Pendleton, Meagan Gonneea, Joel Carr, and two anonymous reviewers provided constructive advice on the study. S.F. was partly supported by US National Science Foundation award 1637630 (PIE LTER), 1832221 (VCR LTER). The geospatial data used in this study are published in the Coastal Wetlands Synthesis Products catalog on ScienceBase (https://www.sciencebase.gov/catalog/item/5b73325ee4b0f5d5787c5ff3).
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  • 4
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    Decreased soil organic matter in a long-term soil warming experiment lowers soil water holding capacity and affects soil thermal and hydrological buffering (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research- Biogeosciences 125(4), (2020): e2019JG005158, doi:10.1029/2019JG005158.
    Description: Long‐term soil warming can decrease soil organic matter (SOM), resulting in self‐reinforcing feedback to the global climate system. We investigated additional consequences of SOM reduction for soil water holding capacity (WHC) and soil thermal and hydrological buffering. At a long‐term soil warming experiment in a temperate forest in the northeastern United States, we suspended the warming treatment for 104 days during the summer of 2017. The formerly heated plot remained warmer (+0.39 °C) and drier (−0.024 cm3 H2O cm−3 soil) than the control plot throughout the suspension. We measured decreased SOM content (−0.184 g SOM g−1 for O horizon soil, −0.010 g SOM g−1 for A horizon soil) and WHC (−0.82 g H2O g−1 for O horizon soil, −0.18 g H2O g−1 for A horizon soil) in the formerly heated plot relative to the control plot. Reduced SOM content accounted for 62% of the WHC reduction in the O horizon and 22% in the A horizon. We investigated differences in SOM composition as a possible explanation for the remaining reductions with Fourier transform infrared (FTIR) spectra. We found FTIR spectra that correlated more strongly with WHC than SOM, but those particular spectra did not differ between the heated and control plots, suggesting that SOM composition affects WHC but does not explain treatment differences in this study. We conclude that SOM reductions due to soil warming can reduce WHC and hydrological and thermal buffering, further warming soil and decreasing SOM. This feedback may operate in parallel, and perhaps synergistically, with carbon cycle feedbacks to climate change.
    Description: We would like to acknowledge Jeffery Blanchard, Priya Chowdhury, Kristen DeAngelis, Luiz Dominguez‐Horta, Kevin Geyer, Rachelle Lacroix, Xaiojun Liu, William Rodriguez, and Alexander Truchonand and for assistance with field sampling. We would like to acknowledge Michael Bernard for assistance with field sampling and lab work. We would like to acknowledge Aaron Ellison for statistical consultation. This research was financially supported by the U.S. National Science Foundation's Long Term Ecological Research Program (NSF‐DEB‐0620443 and NSF‐DEB‐1237491), the Long Term Research in Environmental Biology Program (NSF DEB‐1456528) , and the U.S. Department of Energy (DOE‐DE‐SC0005421 and DOE‐DE‐SC0010740). Data used in this study are available from the Harvard Forest Data Archive (Datasets HF018‐03, HF018‐04, and HF018‐13), accessible at https://harvardforest.fas.harvard.edu/harvard‐forest‐data‐archive.
    Description: 2020-10-04
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  • 5
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    Genetic diversity and connectivity of southern right whales (Eubalaena australis) found in the Brazil and Chile-Peru wintering grounds and the South Georgia (Islas Georgias del Sur) feeding ground (2020)
    Oxford University Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Carroll, E. L., Ott, P. H., McMillan, L. F., Galletti Vernazzani, B., Neveceralova, P., Vermeulen, E., Gaggiotti, O. E., Andriolo, A., Baker, C. S., Bamford, C., Best, P., Cabrera, E., Calderan, S., Chirife, A., Fewster, R. M., Flores, P. A. C., Frasier, T., Freitas, T. R. O., Groch, K., Hulva, P., Kennedy, A., Leaper, R., Leslie, M. S., Moore, M., Oliveira, L., Seger, J., Stepien, E. N., Valenzuela, L. O., Zerbini, A., & Jackson, J. A. Genetic diversity and connectivity of southern right whales (Eubalaena australis) found in the Brazil and Chile-Peru wintering grounds and the South Georgia (Islas Georgias del Sur) feeding ground. Journal of Heredity, 111(3), (2020): 263-276, doi:10.1093/jhered/esaa010.
    Description: As species recover from exploitation, continued assessments of connectivity and population structure are warranted to provide information for conservation and management. This is particularly true in species with high dispersal capacity, such as migratory whales, where patterns of connectivity could change rapidly. Here we build on a previous long-term, large-scale collaboration on southern right whales (Eubalaena australis) to combine new (nnew) and published (npub) mitochondrial (mtDNA) and microsatellite genetic data from all major wintering grounds and, uniquely, the South Georgia (Islas Georgias del Sur: SG) feeding grounds. Specifically, we include data from Argentina (npub mtDNA/microsatellite = 208/46), Brazil (nnew mtDNA/microsatellite = 50/50), South Africa (nnew mtDNA/microsatellite = 66/77, npub mtDNA/microsatellite = 350/47), Chile–Peru (nnew mtDNA/microsatellite = 1/1), the Indo-Pacific (npub mtDNA/microsatellite = 769/126), and SG (npub mtDNA/microsatellite = 8/0, nnew mtDNA/microsatellite = 3/11) to investigate the position of previously unstudied habitats in the migratory network: Brazil, SG, and Chile–Peru. These new genetic data show connectivity between Brazil and Argentina, exemplified by weak genetic differentiation and the movement of 1 genetically identified individual between the South American grounds. The single sample from Chile–Peru had an mtDNA haplotype previously only observed in the Indo-Pacific and had a nuclear genotype that appeared admixed between the Indo-Pacific and South Atlantic, based on genetic clustering and assignment algorithms. The SG samples were clearly South Atlantic and were more similar to the South American than the South African wintering grounds. This study highlights how international collaborations are critical to provide context for emerging or recovering regions, like the SG feeding ground, as well as those that remain critically endangered, such as Chile–Peru.
    Description: This work was supported by the EU BEST 2.0 medium grant 1594 and UK DARWIN PLUS grant 057 and additional funding from the World Wildlife Fund GB107301. The collection of the Chile–Peru sample was supported by the Global Greengrants Fund and the Pacific Whale Foundation. The collection of the Brazilian samples was supported through grants by the Brazilian National Research Council to Paulo H. Ott (CNPq proc. n° 144064/98-7) and Paulo A.C. Flores (CNPq proc. n° 146609/1999-9) and with support from the World Wildlife Fund (WWF-Brazil). The collection of the South African samples was supported by the Global Greengrants Fund, the Pacific Whale Foundation and Charles University Grant Agency (1140217). E.L.C. was partially supported by a Rutherford Discovery Fellowship from the Royal Society of New Zealand. This study forms part of the Ecosystems component of the British Antarctic Survey Polar Sciences for Planet Earth Programme, funded by the Natural Environment Research Council.
    Keywords: population structure ; connectivity ; migration ; gene flow
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Interannual variability of the Mid-Atlantic bight cold pool (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016445, doi:10.1029/2020JC016445.
    Description: The Mid‐Atlantic Bight (MAB) Cold Pool is a bottom‐trapped, cold (temperature below 10°C) and fresh (practical salinity below 34) water mass that is isolated from the surface by the seasonal thermocline and is located over the midshelf and outer shelf of the MAB. The interannual variability of the Cold Pool with regard to its persistence time, volume, temperature, and seasonal along‐shelf propagation is investigated based on a long‐term (1958–2007) high‐resolution regional model of the northwest Atlantic Ocean. A Cold Pool Index is defined and computed in order to quantify the strength of the Cold Pool on the interannual timescale. Anomalous strong, weak, and normal years are categorized and compared based on the Cold Pool Index. A detailed quantitative study of the volume‐averaged heat budget of the Cold Pool region (CPR) has been examined on the interannual timescale. Results suggest that the initial temperature and abnormal warming/cooling due to advection are the primary drivers in the interannual variability of the near‐bottom CPR temperature anomaly during stratified seasons. The long persistence of temperature anomalies from winter to summer in the CPR also suggests a potential for seasonal predictability.
    Description: This work was funded by the National Oceanic and Atmospheric Administration through Awards NOAA‐NA‐15OAR4310133 and NOAA‐NA‐13OAR4830233 and the National Science Foundation Awards OCE‐1049088, OCE‐1419584, and OCE‐0961545.
    Description: 2021-02-03
    Keywords: Mid‐Atlantic Bight ; Cold Pool ; continental shelf ; temperature balance ; interannual variability ; near‐bottom temperature
    Repository Name: Woods Hole Open Access Server
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  • 7
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    The Atlantic Water boundary current in the Chukchi Borderland and Southern Canada Basin (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016197, doi:10.1029/2020JC016197.
    Description: Synoptic shipboard measurements, together with historical hydrographic data and satellite data, are used to elucidate the detailed structure of the Atlantic Water (AW) boundary current system in the southern Canada Basin and its connection to the upstream source of AW in the Chukchi Borderland. Nine high‐resolution occupations of a transect extending from the Beaufort shelf to the deep basin near 152°W, taken between 2003 and 2018, reveal that there are two branches of the AW boundary current that flow beneath and counter to the Beaufort Gyre. Each branch corresponds to a warm temperature core and transports comparable amounts of Fram Strait Branch Water between roughly 200–700 m depth, although they are characterized by a different temperature/salinity (T/S) structure. The mean volume flux of the combined branches is 0.87 ± 0.13 Sv. Using the historical hydrographic data, the two branches are tracked upstream by their temperature cores and T/S signatures. This sheds new light on how the AW negotiates the Chukchi Borderland and why two branches emerge from this region. Lastly, the propagation of warm temperature anomalies through the region is quantified and shown to be consistent with the deduced circulation scheme.
    Description: This work was funded by the following sources: National Science Foundation Grants PLR‐1504333, OPP‐1733564, and OPP‐1504394; National Oceanic and Atmospheric Administration Grant NA14OAR4320158; and National Aeronautics and Space Administration Grant NNX10AF42G.
    Description: 2021-01-27
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Fatores determinantes das diversidades beta taxonômica e funcional do zooplâncton em planícies de inundação neotropicais. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-07-07
    Description: Freshwater ecosystems are changing their natural conditions, influenced and accelerated by human activities. These processes are capable of changing the hydrological regime and the composition of the communities, letting the future of aquatic biodiversity unknown. The construction of dams has been one of the main factors responsible for environmental changes, such as nutrients depletion, increased water transparency and loss of biodiversity in freshwater ecosystems. The aim of our study was to analyze the functional and taxonomic dissimilarity of the zooplankton community and its drivers in response to the effect of the hydrological cycle (drought and rainy), in two highly distinct floodplains, the Upper Paraná River (river with a cascade of dams) and the Amazon. A total of 72 samples were collected (16 AMA dry and 16 on rainy and 20 PAR dry and 20 on rainy) from zooplankton communities as the response variable, phytoplankton as a predictor of food, fish as a predictor of potential predators and limnological variables. Were calculated β-Total diversity and partitioned in the components β-Repl and β-Rich (taxonomic and functional approach). We expect that environmental heterogeneity is going to drive higher values of beta diversity. In sequence, distance-based redundancy analysis (db-RDA) was calculated using the distance matrices generated in the functional and taxonomic beta to assess which are the determinants of zooplankton beta diversity. Thus, we hypothesized that biotic interactions will have stronger relationships with zooplankton dissimilarity during the drought and, limnological variables and spatial component will be more important during rainy season. Greater environmental heterogeneity was found in the Amazon floodplain and also in the dry season. The beta functional and taxonomic diversity of zooplankton showed a similar relationship between the floodplains and between the hydrological periods, represented by the β-Repl component, except for the drought season in the Upper Paraná River, where the functional diversity showed the lowest values, undetected by the taxonomic approach. The factors that influenced the zooplankton beta functional and taxonomic diversity in the two floodplains were different depending on the hydrological period, reflecting once again the difference in environmental heterogeneity and the strength of hydrodynamics within each plain. The analysis of the species and functional traits distribution and, which are the variables structuring this distribution is extremely important to analyze ecosystem processes and services, especially in impacted environments such as the Upper Paraná River floodplain, and a floodplain so biodiverse as the Amazon, and even so, with the prediction of the construction of numerous dams in its hydrographic basin. We reinforce the importance of periodic flooding in these floodplains, for the maintenance of biodiversity and ecosystem services over time, and in this way, prevent biotic homogenization, and consequently, conserve these aquatic ecosystems.
    Description: Os ecossistemas de água doce estão passando por frequentes alterações nas suas condições naturais, influenciadas e aceleradas por atividades humanas. Esses processos são capazes de alterar o regime hidrológico e a composição das comunidades, deixando cada vez mais incerto o futuro da biodiversidade aquática. A construção de barramentos tem sido um dos principais responsáveis por modificações ambientais, como a redução de nutrientes, o aumento da transparência da água e a perda de biodiversidade em ecossistemas dulcícolas. O objetivo deste estudo foi analisar a dissimilaridade funcional e taxonômica da comunidade zooplanctônica e seus determinantes em resposta ao efeito do ciclo hidrológico (seca e chuva) em duas planícies de inundação altamente distintas, a planície do alto rio Paraná (rio com cascata de barramentos) e planície Amazônica. Foram coletadas 72 amostras (16 na seca e 16 na cheia na planície Amazônica e 20 na seca e 20 na cheia na palnície do alto rio Paraná) das comunidades de zooplâncton como variável resposta, de fitoplâncton como variável preditora de alimentação, de peixes como preditor de potenciais predadores e as variáveis limnológicas. Foram calculadas a diversidade β-Total e particionada nos componentes β-Repl e β-Rich em uma abordagem taxonômica e funcional, e espera-se que a heterogeneidade ambiental conduza a maiores valores de diversidade beta. Na sequência, foi calculada através das matrizes de distância geradas na beta funcional e taxonômica a análise de redundância baseada em distância (db-RDA) para avaliar quais os determinantes da diversidade beta. Assim, foi hipotetizado que as interações bióticas apresentarão relações mais fortes com a dissimilaridade zooplanctônica na seca e as variáveis limnológicas e o espaço na cheia. Foi encontrada uma maior heterogeneidade ambiental na planície Amazônica e também no período de seca. A diversidade beta funcional e taxonômica do zooplâncton apresentou uma relação semelhante entre as planícies e entre os períodoshidrológicos, representados pelo componente β-Repl, exceto pelo período de seca na planície do alto rio Paraná onde a diversidade funcional apresentou os menores valores, não detectado pela abordagem taxonômica. Os fatores que influenciaram a diversidade beta funcional e taxonômica zooplanctônica nas duas planícies de inundação foram bem distintos dependendo do período hidrológico, refletindo mais uma vez a diferença na heterogeneidade ambiental e na força da hidrodinâmica dentro de cada planície. A análise da distribuição das espécies e dos traços funcionais, e de quais variáveis estruturam essa distribuição é de extrema importância para analisar os processos e serviços ecossistêmicos, especialmente em ambientes impactados como a planície de inundação do alto rio Paraná, e uma planície tão biodiversa como a Amazônica e, mesmo assim, com previsão de construção de inúmeros barramentos em sua bacia hidrográfica. Reforça-se a importância da inundação periódica nessas planícies, para a manutenção da biodiversidade e dos serviços ecossistêmicos ao longo do tempo e, desta forma, prevenir a homogeneização biótica, e consequentemente, a conservação dos ecossistemas aquáticos.
    Description: PhD
    Keywords: Zooplâncton de água doce ; Comunidades, Ecologia de ; Diversidades beta taxonômica e funcional ; Planícies de inundação ; Floodplain ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Species diversity
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 56pp.
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  • 9
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    Relações filogenéticas em Geophagini (Acanthopterygii, Cichlidae), utilizando caracteres miológicos. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-07-05
    Description: Although several studies have dealt with the description of morphological characters in Cichlidae, usually aiming for phylogenetic inference, little attention has been given to their musculature. The complete striated musculature of a cichlid species, Geophagus sveni Lucinda, Lucena & Assis, was described for the first time, with illustrations of all muscles and a protocol for the dissection of specimens. The striated musculature of at least of species of each genus in tribe Geophagini, among other cichlids, was compared, and 98 characters were described with the purpose of analysing their relation with the group’s phylogeny. This character matrix was employed to produce two unconstrained phylogenetic analyses, one weighted and the other unweighted. The myological characters were mapped upon a pre-existing phylogenetic hypothesis, for understanding the correlation among the characters and trophic specialisations of each taxon. The conclusion is that Geophagini specialised in sifting substrate (winnowers) tend to present a few convergent adaptations, manifested in the shape and degree of development of muscles such as adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 and obliqui ventrales 1–2. This study facilitates future investigations on the functions of the striated muscles in fishes and their role in the processes of adaptive radiation, i.e., functional diversification.
    Description: Apesar de diversos estudos terem tratado da descrição de caracteres morfológicos em Cichlidae, geralmente para fins de inferência filogenética, muito pouco se estudou sobre sua musculatura. Descreveu-se, pela primeira vez, a musculatura estriada completa de uma espécie de ciclídeo, Geophagus sveni Lucinda, Lucena & Assis, com ilustrações de todos os músculos e um protocolo para a dissecção de exemplares. Comparou-se a musculatura esquelética de pelo menos uma espécie de cada gênero da tribo Geophagini, dentre outros ciclídeos, e descreveram-se 98 caracteres com o propósito de analisar sua relação com a filogenia do grupo. Essa matriz de caracteres foi empregada para produzir duas análises filogenéticas sem restrição, uma com pesagem e outra sem pesagem. Mapearam-se os caracteres miológicos sobre uma hipótese filogenética pré-existente, para a compreensão da correlação entre os caracteres e as especializações tróficas de cada táxon. Conclui-se que os Geophagini especializados em peneirar o substrato (winnowers) tendem a apresentar algumas adaptações convergentes, manifestadas na forma e no grau de desenvolvimento de músculos como adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 e obliqui ventrales 1–2. Este estudo possibilita futuras investigações acerca das funções dos músculos estriados em peixes e seu papel nos processos de irradiação adaptativa, i.e., diversificação funcional.
    Description: PhD
    Keywords: Geophagini (Acanthopterygii, Cichlidae) “cará” ; Peixes de água doce ; Filogenia ; Morfologia ; Musculatura esquelética ; ASFA_2015::F::Freshwater fish ; ASFA_2015::T::Taxonomy ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Musculoskeletal system
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 10
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    Predação e estruturação de habitat por macrófitas modificam a diversidade taxonômica e funcional do zooplâncton. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-06-28
    Description: In Neotropical rivers the predation by fish and the structuring of the habitat by macrophytes influence the dynamics of the zooplankton community, altering the richness and composition of species and the richness and functional composition of the zooplankton and thus the functioning of the ecosystem. We analyzed the influence of macrophytes bank structure and predation by forage fish species on taxonomic and functional zooplankton diversity, estimated by different diversity indices (taxonomic and functional richness, taxonomic beta diversity and functional beta diversity). Thus, we assume that different levels of macrophytes structure and fish predation will alter the taxonomic and functional composition of the zooplankton (alpha and beta) between the analyzed points. Beta diversity was split into two distinct components, turnover and nesting. The zooplankton species richness was positively associated with the macrophytes richness and the macrophytes diversity. In turn, the functional richness of zooplankton had a positive association with fish richness and macrophytes richness. For the variation of total taxonomic beta diversity of zooplankton, the Generalized Dissimilarity Modeling (GDM) explained 32.58% of the total among the predictor variables. The macrophytes biomass represented the taxonomic turnover. The variation in total functional beta diversity of the zooplankton explained 9.98% by the GDM model. The abundance of fish represented the functional nesting. Macrophytes structure represented the taxonomic components and predation represented the functional components. The limnological heterogeneity of the coastal region of the Bay River made possible the colonization by multispecies macrophytes banks, influencing the alteration of the fish and zooplankton community and the more heterogeneous the environmental conditions, the greater is the capacity of colonization of different species, which can present different functional traits. The results indicate the importance of maintaining heterogeneous locations, the need to preserve the tributaries in river floodplain systems as they serve as nursery for fish spawning and contribute to a greater richness of fish, which causes an increase in the functional diversity of zooplankton.
    Description: Em rios neotropicais a predação por peixes e a estruturação do habitat por macrófitas influenciam na dinâmica da comunidade zooplanctônica, alterando a riqueza e composição de espécies e a riqueza e composição funcional do zooplâncton e, assim, o funcionamento do ecossistema. Analisou-se a influência da estruturação dos bancos de macrófitas e a predação por espécies de peixes forrageiras sobre a diversidade taxonômica e funcional zooplanctônica, estimadas por diferentes índices de diversidade (riqueza taxonômica e funcional, diversidade beta taxonômica e diversidade beta funcional). Assim, supõe-se que diferentes níveis de estruturação por macrófitas e predação por peixes alterarão a composição taxonômica e funcional do zooplâncton (alfa e beta) entre os pontos analisados. A diversidade beta foi particionada em dois componentes distintos, o turnover e o aninhamento. A riqueza de espécies do zooplâncton associou-se de forma positiva com a riqueza de macrófitas e a diversidade de macrófitas. Por sua vez, a riqueza funcional do zooplâncton teve associação positiva com a riqueza de peixes e a riqueza de macrófitas. Para a variação da diversidade beta total taxonômica do zooplâncton, a Modelagem de Dissimilaridade Generalizada (GDM) explicou 32,58% do total dentre as variáveis preditoras. A biomassa de macrófitas representou o turnover taxonômico. A variação da diversidade beta total funcional do zooplâncton, explicou 9,98% pelo modelo da GDM. A abundância de peixes representou o aninhamento funcional. A estruturação por macrófitas representou os componentes taxonômicos e a predação representou os componentes funcionais. A heterogeneidade limnológica da região litorânea do rio Baía possibilitou a colonização por bancos de macrófitas multiespecíficos, influenciando na alteração da comunidade de peixes e de zooplâncton e quanto mais heterogêneas as condições ambientais, maior é a capacidade de colonização de diferentes espécies, que podem apresentar distintos traços funcionais. Os resultados indicam a importância da manutenção de locais heterogêneos, a necessidade de preservação dos tributários em sistemas rio-planície de inundação por servirem como berçário para desova de peixes e contribuir para uma maior riqueza de peixes, o que causa um aumento na diversidade funcional do zooplâncton.
    Description: Masters
    Keywords: Zooplâncton de água doce ; Riqueza taxonômica e funcional ; Diversidade beta ; Taxonomic richness ; Functional richness ; Beta diversity ; Nestedness ; Turnover ; Comunidades, Ecologia de ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::M::Macrophytes ; ASFA_2015::T::Taxonomy ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Predation
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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    Effects of dam operation on stability, species interactions, and the mechanisms underlying the synchrony of fish in reservoirs. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-08-31
    Description: The construction of dams is among the main anthropogenic impacts in natural freshwater systems. The first consequence of impoundments is the formation of reservoirs upstream, which represents a completely new environment compared to the natural river. In addition to this primary impact, the variations in the reservoir water level may be considered another facet of disturbances. Although several studies investigated the processes that occur in reservoirs, there is a shortfall regarding the effects of the dam operation scheme on ecosystem health. Most dams are designed to operate under two almost contrasting schemes: storage (STR) and run-of-river (ROR). These alternative operation schemes result in very different temporal variations, with STR reservoirs presenting rapid fluctuations while ROR reservoirs have a relatively constant volume. Likewise, this difference in the temporal dynamics of water level likely affects the stability of these ecosystems. In order to investigate how the dam operation scheme could affect the temporal stability of freshwater ecosystems, we used the fish communities from two reservoirs in the Iguaçu River that operate under contrasting schemes. The hypothesis was that the STR reservoir would be less stable, considering the environmental heterogeneity created by frequent water level variations, and the interactions among species would be less important for the structure of the resident fish community. In the first approach, the focus was on stability in terms of the ability to resist and recover (i.e., resistance and resilience) to disturbances. In the second approach, empirical data and simulations were used to assess which mechanism (species interactions, environmental or demographic stochasticity) underlie the synchrony of fish communities. Contrary to the expectation, the results showed the ROR reservoir as less stable than the STR, and the mechanisms underlying species synchrony coincided between reservoirs but played opposite roles. More specifically, the temporal dynamics imposed by ROR operation may have weakened the species-environment relationships, which led to a less stable community. Although the results were consistent, they were only primary evidence and such cause-effect relationships between dam operation and its effects on ecosystem stability require further investigations.
    Description: A construção de barragens está entre os principais impactos antropogênicos em ambientes de água doce. A primeira consequência dos barramentos é a formação de um reservatório à montante, que representa um ambiente completamente modificado, em relação ao rio natural. Impactos secundários, como as variações no nível da água, também podem ser considerados outros tipos de distúrbio. Embora vários estudos investigaram os processos que ocorrem em reservatórios, existe uma lacuna a respeito dos efeitos do modo de operação da barragem sobre a estado dos ecossistemas. A maioria das barragens é projetada para operar sob dois modos: acumulação (ACU) e fio d’água (FDA). Esses modos alternativos resultam em variações temporais muito distintas, com reservatórios ACU apresentando flutuações rápidas, enquanto reservatórios FDA possuem volume relativamente constante. Do mesmo modo, essa diferença na dinâmica temporal do nível da água provavelmente afeta a estabilidade desses ecossistemas. A fim de investigar como o modo de operação da barragem pode afetar a estabilidade temporal dos ambientes de água doce, foram utilizadas comunidades de peixes de dois reservatórios do rio Iguaçu, que operam sob modos diferentes. A hipótese testada foi que o reservatório ACU seria menos estável, considerando a heterogeneidade ambiental criada pelas variações frequentes no nível da água, e as interações entre as espécies seriam menos importantes para a estrutura da comunidade de peixes. Na primeira abordagem, o foco foi na estabilidade em termos da habilidade em resistir e se recuperar (i.e., resistência e resiliência) aos distúrbios. Na segunda abordagem, dados empíricos e simulações foram utilizados para verificar quais mecanismos (interações entre espécies, ou estocasticidade ambiental/demográfica) seriam subjacentes à sincronia das comunidades de peixes. Ao contrário do esperado, os resultados mostraram que o reservatório FDA foi menos estável do que o reservatório ACU e os mecanismos subjacentes à sincronia das espécies coincidiram entre os reservatórios, mas com papéis opostos. Mais especificamente, a dinâmica temporal imposta pela operação do reservatório FDA provavelmente enfraqueceu as relações espécie-ambiente, o que levou a uma comunidade menos estável. Embora os resultados sejam consistentes, são apenas indícios primários e as relações de causa-e-efeito entre o modo de operação da barragem e a estabilidade dos ecossistemas requer investigações futuras.
    Description: PhD
    Keywords: Peixes de água doce ; Reservatórios de água doce ; Environmental stochasticity ; Reservatórios ; Comunidades, Ecologia de ; Competição interespecífica ; Impactos ambientais antropogênicos ; Manejo ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Impacts ; ASFA_2015::C::Competition ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::S::Species diversity ; ASFA_2015::I::Interactions ; ASFA_2015::I::Impoundments
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 12
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    Aspectos ecológicos e taxonômicos da fauna ectoparasitária de Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae) no rio Tapajós, Bacia Amazônica, Brasil. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-01
    Description: Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae), known as “corvina” is a native species of Amazon basin and it is a model for studding their parasites. Intending to analyze ectoparasites ecological aspects, such as distribution and interactions, gills of twenty specimens were analyzed, from rio Tapajós, in the region of Santarém-PA, Brazil. Ecological analyzes considered distribution of parasites between host specimens and also microhabitats occupied by ectoparasites. Eighteen ectoparasites species were founded, fourteen monogenetic and four copepods. Considering species abundance, monogenetic were the dominant group and Euryhaliotrema thatcheri was the most abundant in all analyzed hosts. There was a significate correlation between some parasite species abundance and prevalence with total length and host condition factor. Each species of parasite presented an aggregate distribution pattern. The community of P. squamosissimus ectoparasites were interactive. Considering the distribution of the species in the gills, there was a significant difference in the composition between arches, segments and regions. It is suggested that this distribution is related to factors related to microhabitat, such as water flow and area available for fixation of parasites, as well as the structures of fixation of each species and interactions such as positive associations and competition. During the investigation of the material, specimens that differed from the species already described were founded, so three new monogenetic species were proposed, belonging to the genus Aetheolabes, Anakohnia and Euryhaliotrema, based on their morphological characteristics.
    Description: A corvina de água doce ou pescada branca, Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae) se distribui pela bacia Amazônica e que como hospedeira, consiste em um modelo para o estudo de seus parasitas. Analisou-se os aspectos ecológicos da fauna ectoparasitária de P. squamosissimus, tais como a distribuição e as interações e entre as espécies, por meio das brânquias de vinte espécimes coletados no rio Tapajós, região de Santarém-PA. Considerou-se a distribuição de parasitas entre os espécimes de hospedeiros e também, a partir dos microhabitats que os ectoparasitas ocupavam nesses espécimes. Foram encontradas dezoito espécies de ectoparasitas, dentre os quais catorze monogenéticos e quatro copépodes. Em relação a abundância das espécies, os monogenéticos destacaram-se como grupo dominante e, dentre estas espécies, Euryhaliotrema thatcheri apresentou-se como a mais abundante em todos os hospedeiros analisados. Houve correlação da abundância e da prevalência de algumas espécies de parasitas com o comprimento total e o fator de condição dos hospedeiros. Cada espécie de parasita apresentou padrão de distribuição agregado. A comunidade de ectoparasitas de P. squamosissimus foi considerada interativa. Em relação à distribuição das espécies nas brânquias, houve diferença significativa na composição entre os arcos, segmentos e regiões. Sugere-se que esta distribuição se relaciona com fatores referentes ao microhabitat, como o fluxo de água e a área disponível para fixação dos parasitas, bem como as estruturas de fixação de cada espécie e também interações como associações positivas e competição. Durante a investigação do material, os espécimes encontrados diferiram das espécies previamente descritas, de modo que realizou-se a proposta de três novas espécies de monogenéticos pertencentes aos gêneros Aetheolabes, Anakohnia e Euryhaliotrema a partir de suas características morfológicas.
    Description: PhD
    Keywords: Fauna ectoparasitária ; Monogenea ; Copepoda ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ectoparasites ; ASFA_2015::E::Ectoparasitism
    Repository Name: AquaDocs
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    Timescales and processes of methane hydrate formation and breakdown, with application to geologic systems (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ruppel, C. D., & Waite, W. F. Timescales and processes of methane hydrate formation and breakdown, with application to geologic systems. Journal of Geophysical Research: Solid Earth, 125(8), (2020): e2018JB016459, doi:10.1029/2018JB016459.
    Description: Gas hydrate is an ice‐like form of water and low molecular weight gas stable at temperatures of roughly −10°C to 25°C and pressures of ~3 to 30 MPa in geologic systems. Natural gas hydrates sequester an estimated one sixth of Earth's methane and are found primarily in deepwater marine sediments on continental margins, but also in permafrost areas and under continental ice sheets. When gas hydrate is removed from its stability field, its breakdown has implications for the global carbon cycle, ocean chemistry, marine geohazards, and interactions between the geosphere and the ocean‐atmosphere system. Gas hydrate breakdown can also be artificially driven as a component of studies assessing the resource potential of these deposits. Furthermore, geologic processes and perturbations to the ocean‐atmosphere system (e.g., warming temperatures) can cause not only dissociation, but also more widespread dissolution of hydrate or even formation of new hydrate in reservoirs. Linkages between gas hydrate and disparate aspects of Earth's near‐surface physical, chemical, and biological systems render an assessment of the rates and processes affecting the persistence of gas hydrate an appropriate Centennial Grand Challenge. This paper reviews the thermodynamic controls on methane hydrate stability and then describes the relative importance of kinetic, mass transfer, and heat transfer processes in the formation and breakdown (dissociation and dissolution) of gas hydrate. Results from numerical modeling, laboratory, and some field studies are used to summarize the rates of hydrate formation and breakdown, followed by an extensive treatment of hydrate dynamics in marine and cryospheric gas hydrate systems.
    Description: Both authors have received nearly two decades of support from the U.S. Geological Survey's (USGS's) Energy Resources Program and the Coastal/Marine Hazards and Resources Program and from numerous DOE‐USGS Interagency Agreements, most recently DE‐FE0023495. C. R. acknowledges support from NOAA's Office of Ocean Exploration and Research (OER) under NOAA‐USGS Interagency Agreement 16‐01118.
    Keywords: Gas hydrate ; Hydrate breakdown ; Hydrate formation ; Permafrost hydrate ; Geologic systems ; Marine hydrate
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  • 14
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    A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mixed-species transcriptome analyses (2020)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lasek-Nesselquist, E., & Johnson, M. D. A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mixed-species transcriptome analyses. Genome Biology and Evolution, 11(11), (2019): 3218–3232, doi:10.1093/gbe/evz233.
    Description: Recent high-throughput sequencing endeavors have yielded multigene/protein phylogenies that confidently resolve several inter- and intra-class relationships within the phylum Ciliophora. We leverage the massive sequencing efforts from the Marine Microbial Eukaryote Transcriptome Sequencing Project, other SRA submissions, and available genome data with our own sequencing efforts to determine the phylogenetic position of Mesodinium and to generate the most taxonomically rich phylogenomic ciliate tree to date. Regardless of the data mining strategy, the multiprotein data set, or the molecular models of evolution employed, we consistently recovered the same well-supported relationships among ciliate classes, confirming many of the higher-level relationships previously identified. Mesodinium always formed a monophyletic group with members of the Litostomatea, with mixotrophic species of Mesodinium—M. rubrum, M. major, and M. chamaeleon—being more closely related to each other than to the heterotrophic member, M. pulex. The well-supported position of Mesodinium as sister to other litostomes contrasts with previous molecular analyses including those from phylogenomic studies that exploited the same transcriptomic databases. These topological discrepancies illustrate the need for caution when mining mixed-species transcriptomes and indicate that identifying ciliate sequences among prey contamination—particularly for Mesodinium species where expression from stolen prey nuclei appears to dominate—requires thorough and iterative vetting with phylogenies that incorporate sequences from a large outgroup of prey.
    Description: We thank David Beaudoin and Holly V. Moeller for their assistance in collecting cells and extracting RNA. We thank the Josephine Bay Paul Center for Comparative Molecular Biology and Evolution at the Marine Biological Laboratory for the generous use of their servers. This work was supported in part by a National Science Foundation grant to both authors (IOS 1354773).
    Keywords: Mesodinium ; Litostomatea ; ciliate phylogenomics ; mixed-species transcriptomes ; sequence contamination
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    Quantifying the effects of nutrient enrichment and freshwater mixing on coastal ocean acidification (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rheuban, J. E., Doney, S. C., McCorkle, D. C., & Jakuba, R. W. Quantifying the effects of nutrient enrichment and freshwater mixing on coastal ocean acidification. Journal of Geophysical Research-Oceans, 124, (2019): 9085-9100, doi: 10.1029/2019JC015556.
    Description: The U.S. Northeast is vulnerable to ocean and coastal acidification because of low alkalinity freshwater discharge that naturally acidifies the region, and high anthropogenic nutrient loads that lead to eutrophication in many estuaries. This study describes a combined nutrient and carbonate chemistry monitoring program in five embayments of Buzzards Bay, Massachusetts to quantify the effects of nutrient loading and freshwater discharge on aragonite saturation state (Ω). Monitoring occurred monthly from June 2015 to September 2017 with higher frequency at two embayments (Quissett and West Falmouth Harbors) and across nitrogen loading and freshwater discharge gradients. The more eutrophic stations experienced seasonal aragonite undersaturation, and at one site, nearly every measurement collected was undersaturated. We present an analytical framework to decompose variability in aragonite Ω into components driven by temperature, salinity, freshwater endmember mixing, and biogeochemical processes. We observed strong correlations between apparent oxygen utilization and the portion of aragonite Ω variation that we attribute to biogeochemistry. The regression slopes were consistent with Redfield ratios of dissolved inorganic carbon and total alkalinity to dissolved oxygen. Total nitrogen and the contribution of biogeochemical processes to aragonite Ω were highly correlated, and this relationship was used to estimate the likely effects of nitrogen loading improvements on aragonite Ω. Under nitrogen loading reduction scenarios, aragonite Ω in the most eutrophic estuaries could be raised by nearly 0.6 units, potentially increasing several stations above the critical threshold of 1. This analysis provides a quantitative framework for incorporating ocean and coastal acidification impacts into regulatory and management discussions.
    Description: We thank Kelly Luis, Michaela Fendrock, Will Oesterich, Sheron Luk, Marti Jeglinksi, and Tony Williams for their help with field sample collection and logistical support and Chris Neill, Lindsay Scott, Rich McHorney, and Paul Henderson for laboratory sample analysis. We also thank the Waquoit Bay National Estuarine Research Reserve for loaning their handheld water quality meters and two anonymous reviewers for their feedback on this manuscript. Financial support for this work was provided by the John D. and Catherine T. MacArthur Foundation (grant no. 14‐106159‐000‐CFP), MIT Sea Grant (subaward 5710004045) and the West Wind Foundation. The data used in this analysis can be found in the NOAA NCEI repository for carbonate chemistry measurements, the Ocean Carbon Data System at the following link: https://www.nodc.noaa.gov/ocads/data/0206206.xml.
    Keywords: Coastal Acidification ; Eutrophication
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  • 16
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    Selective preservation of coccolith calcite in Ontong-Java Plateau sediments (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography and Paleoclimatology, 34, (2019): 2141-2157, doi: 10.1029/2019PA003731.
    Description: Dissolution of calcite in deep ocean sediments, which is required to balance global marine CaCO3 production and burial fluxes, is still a poorly understood process. In order to assess the mechanisms of dissolution in sediments, we analyzed four multicore tops taken along a depth transect on the Ontong‐Java Plateau. These cores were taken directly on the equator, and span water column calcite saturation states from ∼0.93 to ∼0.74, allowing us to assess the effect of dissolution on carbonate sediment composition. The top 2 cm of each multicore was sectioned and sieved to separate coccolith from foraminiferal calcite, and the %CaCO3, δ13C, Δ14C, and Mg/Ca were evaluated. The mass ratio of coccoliths to foraminifera increases by a factor of 3 as a function of water depth, reflecting the preferential dissolution of foraminifera. Carbon isotope (δ13C and Δ14C) data suggest that most dissolution takes place at the sediment‐water interface and primarily affects foraminifera. Mg/Ca analyses indicate that the Mg content of the entire foraminiferal assemblage decreases as a function of dissolution. In contrast, coccolith dissolution takes place within the sediments, rather than at the interface. Together these two processes cause coccoliths to be up to 1,000 radiocarbon years younger than foraminifera from the same depth horizon. Despite this within‐sediment coccolith dissolution flux, sediments below the calcite saturation horizon remain enriched in coccolith calcite. Combined with global seafloor hypsometry and calcium carbonate content, this enrichment suggests that globally, coccoliths may outweigh foraminifera in deep ocean sediments by a factor of 1.8.
    Description: A. V. S. thanks the NOSAMS facility and the WHOI/NOSAMS postdoc scholar program, James Funds, and the Bessette family for funding and support. A. Q. acknowledges Williams College research and travel funds. We thank the Stanley W. Watson Director's Discretionary Fund for the Picarro‐Automate analyzer. We thank Ellen Roosen at the WHOI core repository for help with sample identification and sectioning. Thanks to Gretchen Swarr and the WHOI plasma mass spectrometry facility. Finally, we thank Bill Martin and Wally Broecker for enlightening discussions on dissolution and radiocarbon dating of deep ocean sediments. All data are included as supporting information files and are archived with NOAA's World Data Service for Paleoceanography (WDS Paleo; https://www.ncdc.noaa.gov/paleo/study/28150).
    Description: 2020-05-15
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    Evaluating the performance of past climate model projections (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(1), (2020): e2019GL085378, doi:10.1029/2019GL085378.
    Description: Retrospectively comparing future model projections to observations provides a robust and independent test of model skill. Here we analyze the performance of climate models published between 1970 and 2007 in projecting future global mean surface temperature (GMST) changes. Models are compared to observations based on both the change in GMST over time and the change in GMST over the change in external forcing. The latter approach accounts for mismatches in model forcings, a potential source of error in model projections independent of the accuracy of model physics. We find that climate models published over the past five decades were skillful in predicting subsequent GMST changes, with most models examined showing warming consistent with observations, particularly when mismatches between model‐projected and observationally estimated forcings were taken into account.
    Description: Z. H. conceived the project, Z. H. and H. F. D. created the figures, and Z. H., H. F. D., T. A., and G. S. helped gather data and wrote the article text. A public GitHub repository with code used to analyze the data and generate figures and csv files containing the data shown in the figures is available online (https://github.com/hausfath/OldModels). Additional information on the code and data used in the analysis can be found in the supporting information. We would like to thank Piers Forster for providing the ensemble of observationally‐informed radiative forcing estimates. No dedicated funding from any of the authors supported this project.
    Description: 2020-06-04
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  • 18
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    Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis (2020)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Xu, X., Li, G., Li, C., Zhang, J., Wang, Q., Simmons, D. K., Chen, X., Wijesena, N., Zhu, W., Wang, Z., Wang, Z., Ju, B., Ci, W., Lu, X., Yu, D., Wang, Q., Aluru, N., Oliveri, P., Zhang, Y. E., Martindale, M. Q., & Liu, J. Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis. National Science Review, 6(5), (2019):993-1003, doi:10.1093/nsr/nwz064.
    Description: Major evolutionary transitions are enigmas, and the most notable enigma is between invertebrates and vertebrates, with numerous spectacular innovations. To search for the molecular connections involved, we asked whether global epigenetic changes may offer a clue by surveying the inheritance and reprogramming of parental DNA methylation across metazoans. We focused on gametes and early embryos, where the methylomes are known to evolve divergently between fish and mammals. Here, we find that methylome reprogramming during embryogenesis occurs neither in pre-bilaterians such as cnidarians nor in protostomes such as insects, but clearly presents in deuterostomes such as echinoderms and invertebrate chordates, and then becomes more evident in vertebrates. Functional association analysis suggests that DNA methylation reprogramming is associated with development, reproduction and adaptive immunity for vertebrates, but not for invertebrates. Interestingly, the single HOX cluster of invertebrates maintains unmethylated status in all stages examined. In contrast, the multiple HOX clusters show dramatic dynamics of DNA methylation during vertebrate embryogenesis. Notably, the methylation dynamics of HOX clusters are associated with their spatiotemporal expression in mammals. Our study reveals that DNA methylation reprogramming has evolved dramatically during animal evolution, especially after the evolutionary transitions from invertebrates to vertebrates, and then to mammals.
    Description: This work was supported by the National Key Research and Development Program of China (2018YFC1003303), the Strategic Priority Research Program of the CAS (XDB13040200), the National Natural Science Foundation of China (91519306, 31425015), the Youth Innovation Promotion Association of the CAS and the Key Research Program of Frontier Sciences, CAS (QYZDY-SSW-SMC016).
    Keywords: DNA methylation ; evolution ; development ; reprogramming
    Repository Name: Woods Hole Open Access Server
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  • 19
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    Quantification of the arctic sea ice-driven atmospheric circulation variability in coordinated large ensemble simulations (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Liang, Y., Kwon, Y., Frankignoul, C., Danabasoglu, G., Yeager, S., Cherchi, A., Gao, Y., Gastineau, G., Ghosh, R., Matei, D., Mecking, J., V., Peano, D., Suo, L., & Tian, T. Quantification of the arctic sea ice-driven atmospheric circulation variability in coordinated large ensemble simulations. Geophysical Research Letters, 47(1), (2020): e2019GL085397, doi:10.1029/2019GL085397.
    Description: A coordinated set of large ensemble atmosphere‐only simulations is used to investigate the impacts of observed Arctic sea ice‐driven variability (SIDV) on the atmospheric circulation during 1979–2014. The experimental protocol permits separating Arctic SIDV from internal variability and variability driven by other forcings including sea surface temperature and greenhouse gases. The geographic pattern of SIDV is consistent across seven participating models, but its magnitude strongly depends on ensemble size. Based on 130 members, winter SIDV is ~0.18 hPa2 for Arctic‐averaged sea level pressure (~1.5% of the total variance), and ~0.35 K2 for surface air temperature (~21%) at interannual and longer timescales. The results suggest that more than 100 (40) members are needed to separate Arctic SIDV from other components for dynamical (thermodynamical) variables, and insufficient ensemble size always leads to overestimation of SIDV. Nevertheless, SIDV is 0.75–1.5 times as large as the variability driven by other forcings over northern Eurasia and Arctic.
    Description: The authors thank Editor Christina Patricola and two anonymous reviewers for their comprehensive and insightful comments, which have led to improved presentation of this manuscript. We acknowledge support by the Blue‐Action Project (European Union's Horizon 2020 research and innovation program, 727852, http://www.blue‐action.eu/index.php?id = 3498). The WHOI‐NCAR group is also supported by the US National Science Foundation (NSF) Office of Polar Programs Grants 1736738 and 1737377, and their computing and data storage resources, including the Cheyenne supercomputer (doi:10.5065/D6RX99HX), were provided by the Computational and Information Systems Laboratory at NCAR. NCAR is a major facility sponsored by the U.S. NSF under Cooperative Agreement 1852977. The LOCEAN‐IPSL group was granted access to the HPC resources of TGCC under the Allocation A5‐017403 made by GENCI. The SST and SIC data were downloaded from the U.K. Met Office Hadley Centre Observations Datasets (http://www.metoffice.gov.uk/hadobs/hadisst).
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    What can we learn from X-ray fluorescence core scanning data? A paleomonsoon case study (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 21(2), (2020): e2019GC008414, doi:10.1029/2019GC008414.
    Description: X‐ray fluorescence (XRF) core scanning of marine and lake sediments has been extensively used to study changes in past environmental and climatic processes over a range of timescales. The interpretation of XRF‐derived element ratios in paleoclimatic and paleoceanographic studies primarily considers differences in the relative abundances of particular elements. Here we present new XRF core scanning data from two long sediment cores in the Andaman Sea in the northern Indian Ocean and show that sea level related processes influence terrigenous inputs based proxies such as Ti/Ca, Fe/Ca, and elemental concentrations of the transition metals (e.g., Mn). Zr/Rb ratios are mainly a function of changes in median grain size of lithogenic particles and often covary with changes in Ca concentrations that reflect changes in biogenic calcium carbonate production. This suggests that a common process (i.e., sea level) influences both records. The interpretation of lighter element data (e.g., Si and Al) based on low XRF counts is complicated as variations in mean grain size and water content result in systematic artifacts and signal intensities not related to the Al or Si content of the sediments. This highlights the need for calibration of XRF core scanning data based on discrete sample analyses and careful examination of sediment properties such as porosity/water content for reliably disentangling environmental signals from other physical properties. In the case of the Andaman Sea, reliable extraction of a monsoon signal requires accounting for the sea level influence on the XRF data.
    Description: The staff at the Bremen Core Repository is thanked for their help with core handling and Sam Müller at the University of Kiel provided technical assistance with the XRF scanner. We thank two anonymous reviewers for their insightful comments that improved the manuscript significantly. This work was partially funded through DFG Grant HA 5751/3. P. A. and K. N.‐K. acknowledge support from UK‐IODP and Natural and Environment Research Council, UK. The authors express their thanks to all those who contributed to the success of the National Gas Hydrate Program Expedition 01 (NGHP01) and Expedition 353. The data set supporting the conclusions of this article is available in the PANGEA repository (doi: https://doi.pangaea.de/10.1594/PANGAEA.910533).
    Description: 2020-07-10
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  • 21
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    Characterization of sea surface temperature and air-sea heat flux anomalies associated with mesoscale eddies in the South China Sea (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(4), (2020): e2019JC015470, doi:10.1029/2019JC015470.
    Description: This study is to quantify the effects of mesoscale eddies on air‐sea heat fluxes and related air‐sea variables in the South China Sea. Using satellite observations of sea surface temperature (SST) and sea surface height anomaly and a high‐resolution air‐sea heat flux product for the 16‐year period from 2000 to 2015, we conducted the composite patterns of air‐sea fluxes and variables associated with anticyclonic eddies (AEs) and cyclonic eddies (CEs). It is found that the SST‐sea surface height correlations over eddies are not always positive. Only 56% of AEs are corresponded with positive SST anomalies (SSTA), that is, SST+ AEs, and 58% of CEs with negative SSTA, that is, SST− CEs. The percentage of these eddies increases with eddy amplitude and shows slight seasonal variations, higher in winter and lower in summer. Composites of SSTA, air‐sea variables, and fluxes are constructed over all eddies, including both SST+ eddies and SST− eddies. All composites show asymmetric patterns, showing that the centers (where the extrema are located) of the fluxes and variables shift westward and poleward (equatorward) relative to the AEs (CEs) cores. Besides, composites of latent heat flux (LHF), sensible heat flux (SHF), and air temperature show monopole patterns, while composites of wind speed and specific humidity show dipole patterns. For SST+ AEs, the coupling strength is 39.6 ± 6.5 W/m2 (7.2 ± 1.7 W/m2) per degree increase of SSTA for LHF (SHF). For SST− CEs, the coupling strength is 39.0 ± 2.0 W/m2 (9.0 ± 0.96 W/m2) per degree decrease of SSTA for LHF (SHF).
    Description: This research was conducted while Y. Liu was a visiting graduate student at Woods Hole Oceanographic Institution (WHOI). She sincerely thanks the WHOI Academic Programs Office for hosting her visit and is grateful to the support from China Scholarship Council (CSC). This study was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant XDA19060101), the Key R & D project of Shandong Province (Grant 2019JZZY010102), the Key deployment project of Center for Ocean Mega‐Science, CAS (Grant COMS2019R02), the CAS Program (Grant Y9KY04101L), and the National Natural Science Foundation of China (Grant 41776183 and 41906157). Dr. Xiangze Jin is acknowledged for providing the OAFluxHR analysis and for his programming support and guidance to this study. Heat flux data used in this paper can be downloaded (from https://figshare.com/articles/Eddy‐induced_heat_flux_in_the_South_China_Sea/11949735). AVISO SSH data are downloaded from the website (http://www.aviso.altimetry.fr), OISST from the ftp://eclipse.ncdc.noaa.gov/ site, and OAFluxHR analysis will be available from the project website (http://oaflux.whoi.edu).
    Description: 2020-09-16
    Keywords: mesoscale eddies ; air‐sea coupling ; South China Sea
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    Eddies in the Hawaiian archipelago region: formation, characterization, and potential implications on larval retention of reef fish (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(5), (2020): e2019JC015348, doi:10.1029/2019JC015348.
    Description: Here we present an assessment of eddy activity in a 3,500 × 2,000 km region of the North Pacific. Eddies were identified and tracked within a numerical simulation that used the Massachusetts Institute of Technology general circulation model and an eddy characterization algorithm. Spatially, eddy births were more frequent: (1) nearshore (cyclones) and offshore (anticyclones) on the windward side of the main Hawai‘ian Islands; (2) in patches of cyclones and anticyclones that resembled the dipole structure of wind stress curl along the islands’ leeward side; and (3) in zonal patches of eddies of both polarities west and north of the islands. Temporally, high eddy activities occurred in spring. There was a meridional distribution of eddy lifespans, which increased northward. Cyclones were more abundant, longer‐lived, smaller, and more nonlinear. Reef fish spawning locations in Hawai‘i coincide with the regions of high eddy activity, with nonlinear eddies responsible for high larval retention.
    Description: This work was supported by the National Ocean and Atmospheric Administration (NOAA) Fisheries And The Environment (FATE) Award WE133F17SE1020. This work used the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by the National Science Foundation Grant NSF‐OCE170005.
    Description: 2020-10-29
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  • 23
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    Spatially regulated editing of genetic information within a neuron (2020)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vallecillo-Viejo, I. C., Liscovitch-Brauer, N., Diaz Quiroz, J. F., Montiel-Gonzalez, Maria F., Nemes, Sonya E., Rangan, K. J., Levinson, S. R., Eisenberg, E., & Rosenthal, J. J. C. Spatially regulated editing of genetic information within a neuron. Nucleic Acids Research, (2020): gkaa172, doi: 10.1093/nar/gkaa172.
    Description: In eukaryotic cells, with the exception of the specialized genomes of mitochondria and plastids, all genetic information is sequestered within the nucleus. This arrangement imposes constraints on how the information can be tailored for different cellular regions, particularly in cells with complex morphologies like neurons. Although messenger RNAs (mRNAs), and the proteins that they encode, can be differentially sorted between cellular regions, the information itself does not change. RNA editing by adenosine deamination can alter the genome’s blueprint by recoding mRNAs; however, this process too is thought to be restricted to the nucleus. In this work, we show that ADAR2 (adenosine deaminase that acts on RNA), an RNA editing enzyme, is expressed outside of the nucleus in squid neurons. Furthermore, purified axoplasm exhibits adenosine-to-inosine activity and can specifically edit adenosines in a known substrate. Finally, a transcriptome-wide analysis of RNA editing reveals that tens of thousands of editing sites (〉70% of all sites) are edited more extensively in the squid giant axon than in its cell bodies. These results indicate that within a neuron RNA editing can recode genetic information in a region-specific manner.
    Description: National Science Foundation (NSF) [IOS1557748 to J.R.]; United States–Israel Binational Science Foundation [BSF2013094 to J.R. and E.E.]; The Grass Foundation grant in support of the Doryteuthis pealeii Genome Project, and a gift by Mr. Edward Owens. Funding for open access charge: United States–Israel Binational Science Foundation [BSF2013094].
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    Basin-width dependence of northern deep convection (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(15), (2020): e2020GL089135, doi:10.1029/2020GL089135.
    Description: Convection penetrates to the ocean bottom in the North Atlantic but not in the North Pacific. This study examines the role of basin width in shutting down high‐latitude ocean convection. Deep convection is triggered by polar cooling, but it is opposed by precipitation. A two‐layer analytical model illustrates that the overturning circulation acts to mitigate the effect of precipitation by advecting salty, dense water from subtropical latitudes to polar latitudes. The nonlinear dependence of the overturning strength on basin width makes it more efficient in a narrow basin, resulting in a convection shutdown at a stronger freshwater forcing. These predictions are confirmed by simulations with a general circulation model configured with a single closed basin to the north and a reentrant channel to the south. This suggests that basin width may play a role in suppressing convection in the North Pacific but not in the North Atlantic.
    Description: M. K. Y. and R. F. acknowledge support through National Science Foundation (NSF) Awards OCE‐1536515 and AGS‐1835576. M. K. Y. acknowledges funding from the National Defense Science and Engineering Graduate Fellowship and the American Meteorological Society Graduate Student Fellowship. G. R. F. was supported by NSF OCE‐1459702.
    Description: 2020-01-2021
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  • 25
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    Modeling of the influence of sea ice cycle and Langmuir circulation on the upper ocean mixed layer depth and freshwater distribution at the West Antarctic Peninsula (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schultz, C., Doney, S. C., Zhang, W. G., Regan, H., Holland, P., Meredith, M. P., & Stammerjohn, S. Modeling of the influence of sea ice cycle and Langmuir circulation on the upper ocean mixed layer depth and freshwater distribution at the West Antarctic Peninsula. Journal of Geophysical Research: Oceans, 125(8), (2020): e2020JC016109, doi:10.1029/2020JC016109.
    Description: The Southern Ocean is chronically undersampled due to its remoteness, harsh environment, and sea ice cover. Ocean circulation models yield significant insight into key processes and to some extent obviate the dearth of data; however, they often underestimate surface mixed layer depth (MLD), with consequences for surface water‐column temperature, salinity, and nutrient concentration. In this study, a coupled circulation and sea ice model was implemented for the region adjacent to the West Antarctic Peninsula, a climatically sensitive region which has exhibited decadal trends towards higher ocean temperature, shorter sea ice season, and increasing glacial freshwater input, overlain by strong interannual variability. Hindcast simulations were conducted with different air‐ice drag coefficients and Langmuir circulation parameterizations to determine the impact of these factors on MLD. Including Langmuir circulation deepened the surface mixed layer, with the deepening being more pronounced in the shelf and slope regions. Optimal selection of an air‐ice drag coefficient also increased modeled MLD by similar amounts and had a larger impact in improving the reliability of the simulated MLD interannual variability. This study highlights the importance of sea ice volume and redistribution to correctly reproduce the physics of the underlying ocean, and the potential of appropriately parameterizing Langmuir circulation to help correct for biases towards shallow MLD in the Southern Ocean. The model also reproduces observed freshwater patterns in the West Antarctic Peninsula during late summer and suggests that areas of intense summertime sea ice melt can still show net annual freezing due to high sea ice formation during the winter.
    Description: C. Schultz and S. Doney acknowledge support by the U.S. National Science Foundation (grant PLR‐1440435 to the Palmer Long Term Ecological Research program) and support from the University of Virginia. W. G. Zhang acknowledge support by the U.S. National Science Foundation (grant OPP‐1643901). The MITgcm model is an open source model (mitgcm.org). The version used in this study, with added parameterizations and specific configurations, is on C. Schultz’s github (https://github.com/crisoceano/WAP_MITgcm). A copy of the files with specific configurations for this study, the forcing files needed for the simulations, and a copy of the files used for the KPP package are in three separate records on zenodo.org, under DOIs 10.5281/zenodo.3627365, 10.5281/zenodo.3627564, and 10.5281/zenodo.3627742.
    Keywords: West Antarctic Peninsula ; sea ice ; Langmuir circulation ; mixed layer depth ; glacial runoff
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    Introduction to special issue on gas hydrate in porous media: linking laboratory and field-scale phenomena (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Solid Earth 124(8), (2019): 7525-7537, doi: 10.1029/2019JB018186.
    Description: The proliferation of drilling expeditions focused on characterizing natural gas hydrate as a potential energy resource has spawned widespread interest in gas hydrate reservoir properties and associated porous media phenomena. Between 2017 and 2019, a Special Section of this journal compiled contributed papers elucidating interactions between gas hydrate and sediment based on laboratory, numerical modeling, and field studies. Motivated mostly by field observations in the northern Gulf of Mexico and offshore Japan, several papers focus on the mechanisms for gas hydrate formation and accumulation, particularly with vapor phase gas, not dissolved gas, as the precursor to hydrate. These studies rely on numerical modeling or laboratory experiments using sediment packs or benchtop micromodels. A second focus of the Special Section is the role of fines in inhibiting production of gas from methane hydrate, controlling the distribution of hydrate at a pore scale, and influencing the bulk behavior of seafloor sediments. Other papers fill knowledge gaps related to the physical properties of hydrate‐bearing sediments and advance new approaches in coupled thermal‐mechanical modeling of these sediments during hydrate dissociation. Finally, one study addresses the long‐standing question about the fate of methane hydrate at the molecular level when CO2 is injected into natural reservoirs under hydrate‐forming conditions.
    Description: C. R. was supported by the U.S. Geological Survey's Energy Resources Program and the Coastal/Marine Hazards and Resources Program, as well as by DOE Interagency Agreement DE‐FE0023495. C. R. thanks W. Waite and J. Jang for discussions and suggestions that improved this paper and L. Stern for a helpful review. J. Y. Lee was supported by the Ministry of Trade, Industry, and Energy (MOTIE) through the Project “Gas Hydrate Exploration and Production Study (19‐1143)” under the management of the Gas Hydrate Research and Development Organization (GHDO) of Korea and the Korea Institute of Geoscience and Mineral Resources (KIGAM). Any use of trade, firm, or product name is for descriptive purposes only and does not imply endorsement by the U.S. Government.
    Keywords: Gas hydrate ; Methane ; Reservoir properties ; Multiphase flow
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    Surface methane concentrations along the mid-Atlantic bight driven by aerobic subsurface production rather than seafloor gas seeps. (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(5), (2020): e2019JC015989, doi:10.1029/2019JC015989.
    Description: Relatively minor amounts of methane, a potent greenhouse gas, are currently emitted from the oceans to the atmosphere, but such methane emissions have been hypothesized to increase as oceans warm. Here, we investigate the source, distribution, and fate of methane released from the upper continental slope of the U.S. Mid‐Atlantic Bight, where hundreds of gas seeps have been discovered between the shelf break and ~1,600 m water depth. Using physical, chemical, and isotopic analyses, we identify two main sources of methane in the water column: seafloor gas seeps and in situ aerobic methanogenesis which primarily occurs at 100–200 m depth in the water column. Stable isotopic analyses reveal that water samples collected at all depths were significantly impacted by aerobic methane oxidation, the dominant methane sink in this region, with the average fraction of methane oxidized being 50%. Due to methane oxidation in the deeper water column, below 200 m depth, surface concentrations of methane are influenced more by methane sources found near the surface (0–10 m depth) and in the subsurface (10–200 m depth), rather than seafloor emissions at greater depths.
    Description: This research was supported by DOE Grant (DE‐FE0028980) to J. K. and by DOE‐USGS Interagency Agreement DE‐FE0026195.
    Description: 2020-10-04
    Keywords: Methane ; Ocean ; Isotopes ; Gas seeps ; Mid Atlantic bight ; Oxidation
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    A draft genome sequence of the elusive giant squid, Architeuthis dux (2020)
    Oxford University Press
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, A. M., Barrio-Hernandez, I., Hoving, H. J., Tafur-Jimenez, R., Chu, C., Frazao, B., Petersen, B., Penaloza, F., Musacchia, F., Alexander, G. C., Osorio, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Ponten, T., Nielsen, R., & Gilbert, M. T. P. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience, 9(1), (2020): giz152. doi: 10.1093/gigascience/giz152.
    Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea–dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.
    Description: R.R.F. thanks the Villum Fonden for grant VKR023446 (Villum Fonden Young Investigator Grant), the Portuguese Science Foundation (FCT) for grant PTDC/MAR/115347/2009; COMPETE-FCOMP-01-012; FEDER-015453, Marie Curie Actions (FP7-PEOPLE-2010-IEF, Proposal 272927), and the Danish National Research Foundation (DNRF96) for its funding of the Center for Macroecology, Evolution, and Climate. H.O. thanks the Rede Nacional de Espectrometria de Massa, ROTEIRO/0028/2013, ref. LISBOA-01-0145-FEDER-022125, supported by COMPETE and North Portugal Regional Operational Programme (Norte2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). A.C. thanks FCT for project UID/Multi/04423/2019. M.P. acknowledges the support from the Wellcome Trust (grant number WT108749/Z/15/Z) and the European Molecular Biology Laboratory. M.P.T.G. thanks the Danish National Research Foundation for its funding of the Center for GeoGenetics (grant DNRF94) and Lundbeck Foundation for grant R52–5062 on Pathogen Palaeogenomics. S.R. was supported by the Novo Nordisk Foundation grant NNF14CC0001. A.H. is supported by a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (fellowship reference: BB/N020146/1). T.B. is supported by the Biotechnology and Biological Sciences Research Council-funded South West Biosciences Doctoral Training Partnership (training grant reference BB/M009122/1). This work was partially funded by the Lundbeck Foundation (R52-A4895 to B.B.). H.J.T.H. was supported by the David and Lucile Packard Foundation, the Netherlands Organization for Scientific Research (#825.09.016), and currently by the Deutsche Forschungsgemeinschaft (DFG) under grant HO 5569/2-1 (Emmy Noether Junior Research Group). T.V. and B. Brejova were supported by grants from the Slovak grant agency VEGA (1/0684/16, 1/0458/18). F.S. was supported by a PhD grant (SFRH/BD/126560/2016) from FCT. A.A. was partly supported by the FCT project PTDC/CTA-AMB/31774/2017. C.C. and Y.W. are partly supported by grant IIS-1526415 from the US National Science Foundation. Computation for the work described in this article was partially supported by the DeiC National Life Science Supercomputer at DTU.
    Keywords: Cephalopod ; Invertebrate ; Genome assembly
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    Enhanced carbon uptake and reduced methane emissions in a newly restored wetland (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 125(1), (2020): e2019JG005222, doi:10.1029/2019JG005222.
    Description: Wetlands play an important role in reducing global warming potential in response to global climate change. Unfortunately, due to the effects of human disturbance and natural erosion, wetlands are facing global extinction. It is essential to implement engineering measures to restore damaged wetlands. However, the carbon sink capacity of restored wetlands is unclear. We examined the seasonal change of greenhouse gas emissions in both restored wetland and natural wetland and then evaluated the carbon sequestration capacity of the restored wetland. We found that (1) the carbon sink capacity of the restored wetland showed clear daily and seasonal change, which was affected by light intensity, air temperature, and vegetation growth, and (2) the annual daytime (8–18 hr) sustained‐flux global warming potential was −11.23 ± 4.34 kg CO2 m−2 y−1, representing a much larger carbon sink than natural wetland (−5.04 ± 3.73 kg CO2 m−2 y−1) from April to December. In addition, the results showed that appropriate tidal flow management may help to reduce CH4 emission in wetland restoration. Thus, we proposed that the restored coastal wetland, via effective engineering measures, reliably acted as a large net carbon sink and has the potential to help mitigate climate change.
    Description: We would like to thank Yangtze Delta Estuarine Wetland Ecosystem Ministry of Education & Shanghai Observation and Research Station for providing sites during our research. This research was supported by the National Key Research and Development Program of China (Grant 2017YFC0506002), the National Natural Science Foundation of China Overseas and Hong Kong‐Macao Scholars Collaborative Research Fund (Grant 31728003), the China Postdoctoral Science Foundation (Grant 2018M640362), the Shanghai University Distinguished Professor (Oriental Scholars) Program (Grant JZ2016006), the Open Fund of Shanghai Key Lab for Urban Ecological Processes and Eco‐Restoration (Grant SHUES2018B06), and the Scientific Projects of Shanghai Municipal Oceanic Bureau (Grant 2018‐03). The complete data set is available at https://data.4tu.nl/repository/uuid:536b2614‐c4ca‐43d2‐84dd‐6180fd859544.
    Keywords: Blue carbon ; Restored wetland ; Sustained‐flux global warming potential (SGWP) ; Greenhouse gas (GHG) ; Carbon sequestration capacity
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    Sediment delivery to a tidal marsh platform is minimized by source decoupling and flux convergence (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Earth Surface 125(8),(2020): e2020JF005558, doi:10.1029/2020JF005558.
    Description: Sediment supply is a primary factor in determining marsh response to sea level rise and is typically approximated through high‐resolution measurements of suspended sediment concentrations (SSCs) from adjacent tidal channels. However, understanding sediment transport across the marsh itself remains limited by discontinuous measurements of SSC over individual tidal cycles. Here, we use an array of optical turbidity sensors to build a long‐term, continuous record of SSC across a marsh platform and adjacent tidal channel. We find that channel and marsh concentrations are correlated (i.e., coupled) within tidal cycles but are largely decoupled over longer time scales. We also find that net sediment fluxes decline to near zero within 10 m of the marsh edge. Together, these results suggest that large sections of the marsh platform receive minimal sediment independent of flooding frequency or channel sediment supply. Marsh‐centric, as opposed to channel‐centric, measures of sediment supply may better characterize marsh platform vulnerability.
    Description: This work was funded by NSF Awards 1529245, 1654374, 1426981, 1637630, and 1832221, the NSF Graduate Research Fellowship Program, and the USGS Climate and Land Use Research and Development program. We thank D. Walters, J. Himmelstein, D. Nicks, R. Walker, T. Messerschmidt, and the Plum Island Ecosystems LTER, especially S. Kelsey for laboratory and field assistance. Additionally, we thank C. Friedrichs, G. Guntenspergen, and O. Duran Vinent for contributing ideas that helped develop the work, and the reviewers who helped improve the manuscript. This work is Contribution Number 3928 of the Virginia Institute of Marine Science. In memoriam of David Nicks.
    Description: 2021-01-27
    Keywords: Salt marsh ; Sediment transport ; Turbidity ; Flux convergence ; Decoupling
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    Focused fluid flow along the Nootka fault zone and continental slope, explorer-Juan de Fuca Plate Boundary (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Riedel, M., Rohr, K. M. M., Spence, G. D., Kelley, D., Delaney, J., Lapham, L., Pohlman, J. W., Hyndman, R. D., & Willoughby, E. C. Focused fluid flow along the Nootka fault zone and continental slope, explorer-Juan de Fuca Plate Boundary. Geochemistry Geophysics Geosystems, 21(8), (2020): e2020GC009095, doi:10.1029/2020GC009095.
    Description: Geophysical and geochemical data indicate there is abundant fluid expulsion in the Nootka fault zone (NFZ) between the Juan de Fuca and Explorer plates and the Nootka continental slope. Here we combine observations from 〉20 years of investigations to demonstrate the nature of fluid‐flow along the NFZ, which is the seismically most active region off Vancouver Island. Seismicity reaching down to the upper mantle is linked to near‐seafloor manifestation of fluid flow through a network of faults. Along the two main fault traces, seismic reflection data imaged bright spots 100–300 m below seafloor that lie above changes in basement topography. The bright spots are conformable to sediment layering, show opposite‐to‐seafloor reflection polarity, and are associated with frequency reduction and velocity push‐down indicating the presence of gas in the sediments. Two seafloor mounds ~15 km seaward of the Nootka slope are underlain by deep, nonconformable high‐amplitude reflective zones. Measurements in the water column above one mound revealed a plume of warm water, and bottom‐video observations imaged hydrothermal vent system biota. Pore fluids from a core at this mound contain predominately microbial methane (C1) with a high proportion of ethane (C2) yielding C1/C2 ratios 〈500 indicating a possible slight contribution from a deep source. We infer the reflective zones beneath the two mounds are basaltic intrusions that create hydrothermal circulation within the overlying sediments. Across the Nootka continental slope, gas hydrate‐related bottom‐simulating reflectors are widespread and occur at depths indicating heat flow values of 80–90 mW/m2.
    Description: This study represents data from numerous cruises acquired over more than two decades. We would like to thank all the scientific personnel and technical staff involved in data acquisition, processing of samples, and making observations during the ROV dives, as well as the crews and captains of the various research vessels involved. This is contribution #5877 from the University of Maryland Center for Environmental Science. This is NRCan contribution number / Numéro de contribution de RNCan: 20200324.
    Keywords: Fluid flow ; Nootka transform fault ; Gas hydrate ; Intrusion ; Heat flow
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    Recent contributions of theory to our understanding of the Atlantic Meridional Overturning Circulation (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, H. L., Cessi, P., Marshall, D. P., Schloesser, F., & Spall, M. A. Recent contributions of theory to our understanding of the Atlantic Meridional Overturning Circulation. Journal of Geophysical Research-Oceans, 124(8), (2019): 5376-5399, doi: 10.1029/2019JC015330.
    Description: Revolutionary observational arrays, together with a new generation of ocean and climate models, have provided new and intriguing insights into the Atlantic Meridional Overturning Circulation (AMOC) over the last two decades. Theoretical models have also changed our view of the AMOC, providing a dynamical framework for understanding the new observations and the results of complex models. In this paper we review recent advances in conceptual understanding of the processes maintaining the AMOC. We discuss recent theoretical models that address issues such as the interplay between surface buoyancy and wind forcing, the extent to which the AMOC is adiabatic, the importance of mesoscale eddies, the interaction between the middepth North Atlantic Deep Water cell and the abyssal Antarctic Bottom Water cell, the role of basin geometry and bathymetry, and the importance of a three‐dimensional multiple‐basin perspective. We review new paradigms for deep water formation in the high‐latitude North Atlantic and the impact of diapycnal mixing on vertical motion in the ocean interior. And we discuss advances in our understanding of the AMOC's stability and its scaling with large‐scale meridional density gradients. Along with reviewing theories for the mean AMOC, we consider models of AMOC variability and discuss what we have learned from theory about the detection and meridional propagation of AMOC anomalies. Simple theoretical models remain a vital and powerful tool for articulating our understanding of the AMOC and identifying the processes that are most critical to represent accurately in the next generation of numerical ocean and climate models.
    Description: H. L. J. and D. P. M. are grateful for funding from the U.K. Natural Environment Research Council under the UK‐OSNAP project (NE/K010948/1). P. C. gratefully acknowledges support by the National Science Foundation through OCE‐1634128. M. A. S. was supported by the National Science Foundation Grants OCE‐1558742 and OCE‐1634468. We are also grateful to Eli Tziperman and an anonymous reviewer whose comments helped us to improve the manuscript. The Estimating the Circulation and Climate of the Ocean state estimate (ECCO version 4 release 3) used to produce Figure 2 is available online (https://ecco.jpl.nasa.gov). Please refer to the original papers reviewed here for access to any other data discussed.
    Keywords: Atlantic ; Overturning circulation
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    Effects of oceanic mesoscale and submesoscale frontal processes on the vertical transport of phytoplankton (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124(8), (2019): 5999-6014, doi: 10.1029/2019JC015034.
    Description: Oceanic fronts are dynamically active regions of the global ocean that support upwelling and downwelling with significant implications for phytoplankton production and export. However (on time scales urn:x-wiley:jgrc:media:jgrc23568:jgrc23568-math-0001 the inertial time scale), the vertical velocity is 103–104 times weaker than the horizontal velocity and is difficult to observe directly. Using intensive field observations in conjunction with a process study ocean model, we examine vertical motion and its effect on phytoplankton fluxes at multiple spatial horizontal scales in an oligotrophic region in the Western Mediterranean Sea. The mesoscale ageostrophic vertical velocity (∼10 m/day) inferred from our observations shapes the large‐scale phytoplankton distribution but does not explain the narrow (1–10 km wide) features of high chlorophyll content extending 40–60 m downward from the deep chlorophyll maximum. Using modeling, we show that downwelling submesoscale features concentrate 80% of the downward vertical flux of phytoplankton within just 15% of the horizontal area. These submesoscale spatial structures serve as conduits between the surface mixed layer and pycnocline and can contribute to exporting carbon from the sunlit surface layers to the ocean interior.
    Description: The AlborEx experiment was conducted in the framework of PERSEUS EU‐funded project (Grant 287600) and was led by the Spanish National Research Council (CSIC) and involved other national and international partners: Balearic Islands Coastal Observing and Forecasting System (SOCIB, Spain); Consiglio Nazionale delle Ricerche (CNR, Italy); Istituto Nazionale di Oceanografia e di Geofisica Sperimentale (OGS, Italy); and Woods Hole Oceanographic Institution (WHOI, ONR Grant N00014‐16‐1‐3130). Glider operations were partially funded by JERICO FP7 project. Part of this work has been carried out as part of the Copernicus Marine Environment Monitoring Service (CMEMS) MedSUB project. CMEMS is implemented by Mercator Ocean in the framework of a delegation agreement with the European Union. S. R. and A. P. acknowledge support from WHOI Subcontract A101339. Data available from authors: Ship CTDs, glider and VM‐ADCP data files are available in the SOCIB data catalog (https://doi.org/10.25704/z5y2-qpye); model data are available at IMEDEA data catalog https://ide.imedea.uib-csic.es/thredds/catalog/data/projects/alborex/catalog.html. We thank all the crew and participants on board R/V SOCIB for their collaboration and Marc Torner and the SOCIB glider Facility for their efficient cooperation. We also thank B. Mourre for numerical data from the Western Mediterranean Operational Model to initialize the Process Study Ocean Model. Figures were created using the cmocean colormaps package (Thyng et al., 2016).
    Keywords: Vertical motion ; Ocean front ; Mesoscale ; Submesoscale ; Transport ; Phytoplankton
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    The relationship between U.S. East Coast sea level and the Atlantic Meridional Overturning Circulation: a review (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Little, C. M., Hu, A., Hughes, C. W., McCarthy, G. D., Piecuch, C. G., Ponte, R. M., & Thomas, M. D. The relationship between U.S. East Coast sea level and the Atlantic Meridional Overturning Circulation: a review. Journal of Geophysical Research-Oceans, 124(9), (2019): 6435-6458, doi:10.1029/2019JC015152.
    Description: Scientific and societal interest in the relationship between the Atlantic Meridional Overturning Circulation (AMOC) and U.S. East Coast sea level has intensified over the past decade, largely due to (1) projected, and potentially ongoing, enhancement of sea level rise associated with AMOC weakening and (2) the potential for observations of U.S. East Coast sea level to inform reconstructions of North Atlantic circulation and climate. These implications have inspired a wealth of model‐ and observation‐based analyses. Here, we review this research, finding consistent support in numerical models for an antiphase relationship between AMOC strength and dynamic sea level. However, simulations exhibit substantial along‐coast and intermodel differences in the amplitude of AMOC‐associated dynamic sea level variability. Observational analyses focusing on shorter (generally less than decadal) timescales show robust relationships between some components of the North Atlantic large‐scale circulation and coastal sea level variability, but the causal relationships between different observational metrics, AMOC, and sea level are often unclear. We highlight the importance of existing and future research seeking to understand relationships between AMOC and its component currents, the role of ageostrophic processes near the coast, and the interplay of local and remote forcing. Such research will help reconcile the results of different numerical simulations with each other and with observations, inform the physical origins of covariability, and reveal the sensitivity of scaling relationships to forcing, timescale, and model representation. This information will, in turn, provide a more complete characterization of uncertainty in relevant relationships, leading to more robust reconstructions and projections.
    Description: The authors acknowledge funding support from NSF Grant OCE‐1805029 (C. M. L.) and NASA Contract NNH16CT01C (C. M. L. and R. M. P.), the Regional and Global Model Analysis (RGMA) component of the Earth and Environmental System Modeling Program of the U.S. Department of Energy's Office of Biological & Environmental Research Cooperative Agreement DE‐FC02‐97ER62402 (A. H.), Natural Environment Research Council NE/K012789/1 (C. W. H.), Irish Marine Institute Project A4 PBA/CC/18/01 (G. D. M.), and NSF Awards OCE‐1558966 and OCE‐1834739 (C. G. P.). The National Center for Atmospheric Research is sponsored by National Science Foundation. The authors thank the two reviewers for their comments, and CLIVAR and the U.S. AMOC Science Team for inspiration and patience. All CMIP5 data used in Figures 4-6 are available at http://pcmdi9.llnl.gov/ website; the AMOC strength fields were digitized from Chen et al. (2018, supporting information Figure S3).
    Keywords: Sea level ; AMOC ; United States ; Coastal ; Climate model ; Review
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    Long-term evolution of nontransform discontinuities at the Mid-Atlantic Ridge, 24°N–27°30′N (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Solid Earth 124 (2019): 10023–10055, doi: 10.1029/2019JB017648.
    Description: We studied long‐term evolution of nontransform discontinuities (NTDs) on the Mid‐Atlantic Ridge from 0‐ to ~20‐ to 25‐Ma crust using plate reconstructions of multibeam bathymetry, long‐range HMR1 sidescan sonar, residual mantle Bouguer gravity anomaly (RMBA), and gravity‐derived crustal thickness. NTDs have propagated north and south with respect to flowlines of relative plate motion and both rapidly and slowly compared to the half spreading rate; at times they have been quasi‐stable. Fast, short‐term (〈2 Myr) propagation is driven by reduced magma supply (increased tectonic extension) in the propagating ridge tip when NTD ridge‐axis offsets are small (≲5 km). Propagation at larger offsets generally is slower and longer term. These NTDs can show classic structures of rift propagation including inner and outer pseudofaults and crustal blocks transferred between ridge flanks by discontinuous jumps of the propagating ridge tip. In all cases crustal transfer occurs within the NTD valley. Aside from ridge‐axis offset, the evolution of NTDs appears to be controlled by three factors: (1) gross volume and distribution of magma supplied to ridge segments as controlled by 3‐D heterogeneities in mantle fertility and/or dynamic upwelling; this controls fundamental ridge segmentation. (2) The lithospheric plumbing system through which magma is delivered to the crust. (3) The consequent focusing of tectonic extension in magma‐poor parts of spreading segments, typically at segment ends, which can drive propagation. We also observe long‐wavelength (5‐10 Myr) RMBA asymmetry between the conjugate ridge flanks, and we attribute this to asymmetric distribution of density anomalies in the upper mantle.
    Description: We thank Tingting Wang for providing plate‐reconstruction codes, Ross Parnell‐Turner for technical support, and Anouk Beniest and an anonymous reviewer for comments that helped to improve the manuscript. We benefited greatly from discussion with the Deep Sea Geodynamics Group of the South China Sea Institute of Oceanology. Figures were drawn using the GMT software of Wessel and Smith (1998). This study was supported by National Natural Science Foundation of China (91628301, 41890813, and U1606401), Chinese Academy of Sciences (Y4SL021001, QYZDY‐SSW‐DQC005, and 133244KYSB20180029), Chinese National 985 Project (1350141509), International Exchange Program for Graduate Students of Tongji University (2016020006), China Scholarship Council (201706260034), and Woods Hole Oceanographic Institution. We thank the crews and science parties of the ARSRP, MAREAST, MODE94, and MODE98 expeditions for their contributions to data acquisition. ARSRP and MAREAST data acquisition was funded by Office of Naval Research grant N00014‐90‐J‐6121 and by U.S. National Science Foundation grant OCE‐9503561, respectively. Access to the original data used in this study is available at https://doi.org/10.26025/z2z7‐kd89.
    Description: 2020-03-11
    Keywords: Mid‐Atlantic Ridge ; Nontransform discontinuity ; Plate reconstruction ; Propagating rift
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    Shelfbreak downwelling in the Alaskan Beaufort Sea (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124 (2019): 7201-7225, doi: 10.1029/2019JC015520.
    Description: The oceanographic response and atmospheric forcing associated with downwelling along the Alaskan Beaufort Sea shelf/slope is described using mooring data collected from August 2002 to September 2004, along with meteorological time series, satellite data, and reanalysis fields. In total, 55 downwelling events are identified with peak occurrence in July and August. Downwelling is initiated by cyclonic low‐pressure systems displacing the Beaufort High and driving westerly winds over the region. The shelfbreak jet responds by accelerating to the east, followed by a depression of isopycnals along the outer shelf and slope. The storms last 3.25 ± 1.80 days, at which point conditions relax toward their mean state. To determine the effect of sea ice on the oceanographic response, the storms are classified into four ice seasons: open water, partial ice, full ice, and fast ice (immobile). For a given wind strength, the largest response occurs during partial ice cover, while the most subdued response occurs in the fast ice season. Over the two‐year study period, the winds were strongest during the open water season; thus, the shelfbreak jet intensified the most during this period and the cross‐stream Ekman flow was largest. During downwelling, the cold water fluxed off the shelf ventilates the upper halocline of the Canada Basin. The storms approach the Beaufort Sea along three distinct pathways: a northerly route from the high Arctic, a westerly route from northern Siberia, and a southerly route from south of Bering Strait. Differences in the vertical structure of the storms are presented as well.
    Description: The authors thank Paula Fratantoni and Dan Torres for processing the moored profiler and ADCP data, respectively. Data from the SBI mooring array can be found at https://archive.eol.ucar.edu/projects/sbi/all_data.shtml. Funding for the analysis was provided by the following grants: National Science Foundation Grants OCE‐1259618 (N. F. and R. P.), OCE‐1756361 (N. F.), and PLR‐1504333 (N. F. and R. P.); National Oceanic and Atmospheric Administration Grant NA14‐OAR4320158 (R. P. and P. L.); and the Natural Sciences and Engineering Research Council of Canada (K. M.).
    Description: 2020-04-16
    Keywords: Downwelling ; Beaufort Sea ; Shelfbreak ; North Slope ; Arctic cyclone
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    Magnetic mineral populations in lower oceanic crustal gabbros (Atlantis Bank, SW Indian Ridge): implications for marine magnetic anomalies (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 21(3), (2020): e2019GC008847, doi:10.1029/2019GC008847.
    Description: To learn more about magnetic properties of the lower ocean crust and its contributions to marine magnetic anomalies, gabbro samples were collected from International Ocean Discovery Program Hole U1473A at Atlantis Bank on the Southwest Indian Ridge. Detailed magnetic property work links certain magnetic behaviors and domain states to specific magnetic mineral populations. Measurements on whole rocks and mineral separates included magnetic hysteresis, first‐order reversal curves, low‐temperature remanence measurements, thermomagnetic analysis, and magnetic force microscopy. Characteristics of the thermomagnetic data indicate that the upper ~500 m of the hole has undergone hydrothermal alteration. The thermomagnetic and natural remanent magnetization data are consistent with earlier observations from Hole 735B that show remanence arises from low‐Ti magnetite and that natural remanent magnetizations are up to 25 A m−1 in evolved Fe‐Ti oxide gabbros, but are mostly 〈1 A m−1. Magnetite is present in at least three forms. Primary magnetite is associated with coarse‐grained oxides that are more frequent in the upper part of the hole. This magnetic population is linked to dominantly “pseudo‐single‐domain” behavior that arises from fine‐scale lamellar intergrowths within the large oxides. Deeper in the hole the magnetic signal is more commonly dominated by an interacting single‐domain assemblage most likely found along crystal discontinuities in olivine and/or pyroxene. A third contribution is from noninteracting single‐domain inclusions within plagioclase. Because the concentration of the highly magnetic, oxide‐rich gabbros is greatest toward the surface, the signal from coarse oxides will likely dominate the near‐bottom magnetic anomaly signal at Atlantis Bank.
    Description: This work used samples and data provided by the International Ocean Discovery Program. Funding was provided by the U.S. Science Support Program (J.B.). I.L. has benefited from a Smithsonian Edward and Helen Hintz Secretarial Scholarship. We thank the members of the IODP Expedition 360 Science Party, and the captain and crew of the JOIDES Resolution. Part of this work was done as a Visiting Fellow at the Institute for Rock Magnetism (IRM) at the University of Minnesota. The IRM is made possible through the Instrumentation and Facilities program of the National Science Foundation, Earth Sciences Division, and by funding from the University of Minnesota. We would like to thank IRM staff M. Jackson, P. Solheid, and D. Bilardello for their generous assistance. Many thanks to A. Butula, K. Vernon, and J. Marquardt for their assistance with rock magnetic measurements at UWM and to L. McHenry for assistance with XRD. We also thank two anonymous reviewers for their thoughtful comments that improved the manuscript. Magnetic data associated with this manuscript are available in the Magnetics Information Consortium (MagIC) database at https://www.earthref.org/MagIC/doi/10.1029/2019GC008847. XRD data are available at https://zenodo.org/record/3611642.
    Description: 2020-08-28
    Keywords: Marine magnetic anomalies ; Ocean crust magnetization ; Magnetic mineralogy ; IODP ; Expedition 360 ; JOIDES Resolution
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    Impact of current-wind interaction on vertical processes in the Southern Ocean (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(4), (2020): e2020JC016046, doi:10.1029/2020JC016046.
    Description: Momentum input from westerly winds blowing over the Southern Ocean can be modulated by mesoscale surface currents and result in changes in large‐scale ocean circulation. Here, using an eddy‐resolving 1/20 degree ocean model configured near Drake Passage, we evaluate the impact of current‐wind interaction on vertical processes. We find a reduction in momentum input from the wind, reduced eddy kinetic energy, and a modification of Ekman pumping rates. Wind stress curl resulting from current‐wind interaction leads to net upward motion, while the nonlinear Ekman pumping term associated with horizontal gradients of relative vorticity induces net downward motion. The spatially averaged mixed layer depth estimated using a density criteria is shoaled slightly by current‐wind interaction. Current‐wind interaction, on the other hand, enhances the stratification in the thermocline below the mixed layer. Such changes have the potential to alter biogeochemical processes including nutrient supply, biological productivity, and air‐sea carbon dioxide exchange.
    Description: The MITgcm can be obtained online (http://mitgcm.org). The geostrophic current product derived from the sea level anomaly can be downloaded in the Copernicus Marine and Environment Monitoring Service of Ssalto/Duacs gridded “allsat” series and along‐track Sea Level Anomalies, Absolute Dynamic Topographies and Geostrophic velocities over the Global Ocean, Mediterranean Sea, Black Sea, European Seas and Acrtic Ocean areas, in Delayed‐Time and in Near‐Real‐Time. Resources supporting this work were provided by the NASA High‐End Computing (HEC) Program through the NASA Advanced Supercomputing (NAS) Division at Ames Research Center with the award number SMD‐15‐5752. H. S., J. M., and D. J. M. were supported by the NSF MOBY project (OCE‐1048926 and OCE‐1048897). H. S. acknowledges the support by National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (NRF‐2019R1C1C1003663) and Yonsei University Research Fund of 2018‐22‐0053. D. J. M. also gratefully acknowledges NSF and NASA support, along with the Holger W. Jannasch and Columbus O'Donnell Iselin shared chairs for Excellence in Oceanography. H. Seo acknowledges the support from the ONR (N00014‐17‐1‐2398), NOAA (NA10OAR4310376), and the Andrew W. Mellon Foundation Endowed Fund for Innovative Research at WHOI. We also thank two anonymous referees whose comments significantly improved the presentation of results.
    Description: 2020-09-17
    Keywords: Southern Ocean ; Eddy-wind interaction ; Ekman pumping ; Stratification ; Eddy kinetic energy ; Mixed layer depth
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  • 39
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    What caused recent shifts in tropical pacific decadal sea-level trends? (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124 (2019): 7575-7590, doi: 10.1029/2019JC015339.
    Description: Satellite altimetry reveals substantial decadal variability in sea level 𝜁 across the tropical Pacific during 1993–2015. An ocean state estimate that faithfully reproduces the observations is used to elucidate the origin of these low-frequency tropical Pacific 𝜁 variations. Analysis of the hydrostatic equation reveals that recent decadal 𝜁 changes in the tropical Pacific are mainly hermosteric in nature, related to changes in upper-ocean heat content. A forcing experiment performed with the numerical model suggests that anomalous wind stress was an important driver of the relevant heat storage and thermosteric variation. Closed budget diagnostics further clarify that the wind-stress-related thermosteric 𝜁 variation resulted from the joint actions of large-scale ocean advection and local surface heat flux, such that advection controlled the budget over shorter, intraseasonal to interannual time scales, and local surface heat flux became increasingly influential at longer decadal periods. In particular, local surface heat flux was important in contributing to a recent reversal of decadal 𝜁 trends in the tropical Pacific. Contributions from local surface heat flux partly reflect damping latent heat flux tied to wind-stress-driven sea-surface-temperature variations.
    Description: This work was supported by NSF Awards OCE‐1558966 and OCE‐1834739. Support of the ECCO project by the NASA Physical Oceanography, Cryospheric Science, and Modeling, Analysis and Prediction programs is also acknowledged. We thank Ou Wang (NASA JPL) for performing the forcing perturbation experiment. Comments from two anonymous reviewers were helpful. Altimetry observations used in Figures 1 and 2 were downloaded from CSIRO (http://www.cmar.csiro.au/sealevel/sl_data_cmar.html). ECCOv4 output is available on the group website (https://ecco.jpl.nasa.gov/).
    Description: 2020-04-30
    Keywords: Sea‐level change ; Sea‐level variability ; Decadal variability ; Tropical Pacific ; State estimation
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  • 40
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    Coral records of temperature and salinity in the tropical western Pacific reveal influence of the Pacific Decadal Oscillation since the late nineteenth century (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ramos, R. D., Goodkin, N. F., Siringan, F. P., & Hughen, K. A. Coral records of temperature and salinity in the tropical western Pacific reveal influence of the Pacific Decadal Oscillation since the late nineteenth century. Paleoceanography and Paleoclimatology, 34(8), (2019): 1344-1358, doi: 10.1029/2019PA003684.
    Description: The Pacific Decadal Oscillation (PDO) is a complex aggregate of different atmospheric and oceanographic forcings spanning the extratropical and tropical Pacific. The PDO has widespread climatic and societal impacts, thus understanding the processes contributing to PDO variability is critical. Distinguishing PDO‐related variability is particularly challenging in the tropical Pacific due to the dominance of the El Niño–Southern Oscillation and influence of anthropogenic warming signals. Century‐long western Pacific records of subannual sea surface temperature (SST) and sea surface salinity (SSS), derived from coral Sr/Ca and δ18O profiles, respectively, allow for evaluating different climatic sensitivities and identifying PDO‐related variability in the region. The summer Sr/Ca‐SST record provides evidence of a significant SST increase, likely tied to greenhouse gas emissions. Anthropogenic warming is masked in the winter Sr/Ca‐SST record by interannual to multidecadal scale changes driven by the East‐Asian Winter Monsoon and the PDO. Decadal climate variability during winter is strongly correlated to the PDO, in agreement with other PDO records in the region. The PDO also exerts influence on the SSS difference between the dry and wet season coral δ18O (δ18Oc)‐SSS records through water advection. The PDO and El Niño–Southern Oscillation constructively combine to enhance/reduce advection of saline Kuroshio waters at our site. Overall, we are able to demonstrate that climate records from a tropical reef environment significantly capture PDO variability and related changes over the period of a century. This implies that the tropical western Pacific is a key site in understanding multifrequency climate variability, including its impact on tropical climate at longer timescales.
    Description: The authors would like to thank J. Ossolinski, J. Aggangan, J. Quevedo, R. Lloren, G. Albano, J. Perez, and A. Bolton for their help in acquiring core samples in the field. The detailed comments and suggestions of two anonymous reviewers significantly improved the original manuscript. This research was funded by the National Research Foundation Singapore under its Singapore NRF Fellowship scheme awarded to N. F. Goodkin (National Research Fellow award NRF‐RF2012‐03), as administered by the Earth Observatory of Singapore and the Singapore Ministry of Education under the Research Centers of Excellence initiative and by the Ministry of Education, Singapore through its Academic Research Fund Tier 2 (Project MOE2016‐T2‐1‐016). The coral Sr/Ca and δ18O data generated in this study are available in the supporting information Data Set S1 and are archived at the NOAA NCDC World Data Center for Paleoclimatology (https://www.ncdc.noaa.gov/paleo/study/27271). Other data and resources used in this study were sourced from the following sites: PDO index (http://research.jisao.washington.edu/pdo/PDO.latest); IPO index (https://www.esrl.noaa.gov/psd/data/timeseries/IPOTPI/ipotpi.hadisst2.data); NP index (https://www.esrl.noaa.gov/psd/data/correlation/np.data); PDO and North Pacific SST reconstructions (https://www.ncdc.noaa.gov/data‐access/paleoclimatology‐data); and MTM coherence and phase analysis MATLAB® code (https://www.mathworks.com/matlabcentral/fileexchange/22551‐multi‐taper‐coherence‐method‐with‐bias‐correction).
    Keywords: Coral proxies ; PDO ; ENSO ; EAWM ; Western Pacific
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    Silica-rich vein formation in an evolving stress field, Atlantis Bank Oceanic Core Complex (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ma, Q., Dick, H. J. B., Urann, B., & Zhou, H. Silica-rich vein formation in an evolving stress field, Atlantis Bank Oceanic Core Complex. Geochemistry Geophysics Geosystems, 21(7), (2020): e2019GC008795, doi:10.1029/2019GC008795.
    Description: Drilling 809‐m Hole U1473A in the gabbro batholith at the Atlantis Bank Oceanic Core Complex (OCC) found two felsic vein generations: late magmatic fractionates, rich in deuteric water, hosted by oxide gabbros, and anatectic veins associated with dike intrusion and introduction of seawater‐derived volatiles. Microtextures show a change from compressional to tensional stress during vein formation. Temperatures and oxidation state were obtained from amphibole‐plagioclase and oxide pairs in the adjacent gabbros. Type I veins generally have reverse shear‐sense, with restricted ΔFMQ, high Mt/Ilm ratios, and low‐amphibole Cl/F indicating deuteric fluids. They formed during percolation and fractionation of Fe‐Ti‐rich melts into the primary olivine gabbro. Type II veins are usually hosted by olivine gabbro, occur at dike contacts and the margins of normal‐sense shear zones. They are undeformed or weakly deformed, with highly variable ΔFMQ, low Mt/Ilm ratios, and high‐amphibole Cl/F, indicating seawater‐derived fluids. The detachment fault on which the gabbro massif was emplaced rooted near the base of the dike‐gabbro transition beneath the rift valley. The ingress of seawater volatiles began at 〉800°C and penetrated at least ~590 m into the lower crust during extensional faulting in the rift valley and adjacent rift mountains. The sequence of the felsic vein formation likely reflects asymmetric diapiric flow, with a reversal of the stress regime, and a transition from juvenile to seawater‐derived volatiles. This, in turn, is consistent with fault capture leading to the large asymmetries in spreading rates during OCC formations and heat flow beneath the rift mountains.
    Description: This study was supported by the Chinese National Key Basic Research Program (Grant 2012CB417300). H. Dick and B. Urann were supported by U.S. National Science Foundation (Grant OCE‐MG&G 8371300). Emmanuel Codillo provided numerous useful comments and moral support. We thank N. Chatterjee for assistance in analyzing major element mineral composition in the MIT Electron Microprobe Laboratory. The great contributions of 360 Scientific Party for their initial shipboard description and interpretations of the Hole U1473A cores made this work possible. Special thanks go to C. J. MacLeod, Expedition cochief scientist, and Peter Blum, staff scientist, Stephen Midgley, IODP operations superintendent, and Siem Offshore James Samuel McLelland, offshore installation manager, ship's master Terry Skinner, and the crew and drillers on the JOIDES Resolution.
    Keywords: Felsic veins ; Magma chambers ; Ocean ridge ; Geothermometry ; Flourine‐chlorine ; Dynamics
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  • 42
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    Exceptional 20th century ocean circulation in the Northeast Atlantic (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Spooner, P. T., Thornalley, D. J. R., Oppo, D. W., Fox, A. D., Radionovskaya, S., Rose, N. L., Mallett, R., Cooper, E., & Roberts, J. M. Exceptional 20th century ocean circulation in the Northeast Atlantic. Geophysical Research Letters, 47(10), (2020): e2020GL087577, doi:10.1029/2020GL087577.
    Description: The North Atlantic subpolar gyre (SPG) connects tropical and high‐latitude waters, playing a leading role in deep‐water formation, propagation of Atlantic water into the Arctic, and as habitat for many ecosystems. Instrumental records spanning recent decades document significant decadal variability in SPG circulation, with associated hydrographic and ecological changes. Emerging longer‐term records provide circumstantial evidence that the North Atlantic also experienced centennial trends during the 20th century. Here, we use marine sediment records to show that there has been a long‐term change in SPG circulation during the industrial era, largely during the 20th century. Moreover, we show that the shift and late 20th century SPG configuration were unprecedented in the last 10,000 years. Recent SPG dynamics resulted in an expansion of subtropical ecosystems into new habitats and likely also altered the transport of heat to high latitudes.
    Description: We thank Janet Hope and UCL laboratory staff, colleagues who sailed on EN539, Kathryn Pietro‐Rose, Sean O'Keefe and Henry Abrams, Sara Chipperton, Tanya Monica, Laura Thrower and Kitty Green for sediment processing, Miles Irving for artwork assistance, James Rolfe for nitrogen isotope measurement, Maryline Vautravers and Michael Kucera for guidance, Arne Biastoch and Christian Mohn for discussion of VIKING20, and Chris Brierley, Meric Srokosz, and Jon Robson for comments. Funding was provided by National Science Foundation (NSF) grant OCE‐1304291 to D.W.O. and D.J.R.T., the Leverhulme Trust, National Environment Research Council (NERC) grant NE/S009736/1, and the ATLAS project to D.J.R.T. This project has received funding from the European Union's Horizon 2020 research and innovation program under grant agreement 678760 (ATLAS). This paper reflects only the authors views and the European Union cannot be held responsible for any use that may be made of the information contained herein.
    Keywords: Foraminifera ; Subpolar gyre ; North Atlantic ; Ocean circulation ; Industrial era
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  • 43
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    Equatorial circulation in the western Indian Ocean during onset of the 2018 summer monsoon and links to the Bay of Bengal (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(10), (2020): e2020GL087215, doi:10.1029/2020GL087215.
    Description: Cross‐equator transects occupied by an underwater glider and a research vessel in the western Indian Ocean captured the evolution of equatorial circulation during onset of the boreal summer monsoon in 2018. At the end of the winter monsoon in March, surface currents were westward, while the equatorial undercurrent carried salty Arabian Sea High‐Salinity Water eastward. As winds transitioned from westward to eastward during April, an eastward near‐surface Wyrtki Jet developed, while the equatorial undercurrent weakened, vanishing by May. A first‐mode baroclinic Kelvin wave propagated through the survey region after westward winds relaxed. However, the vertical structure of the evolving circulation was inconsistent with the first baroclinic mode, suggesting the influence of higher modes in setting observed vertical structure. The strong equatorial undercurrent at the end of the winter monsoon allowed high‐salinity waters from the western equatorial Indian Ocean to reach the southern Bay of Bengal in summer 2018.
    Description: This work was supported by the Office of Naval Research as part of the NASCar DRI under Grant N000141512632 and as part of the MISO‐BOB DRI under Grant N000141712968.
    Keywords: Monsoon ; Indian Ocean ; Equatorial ; Underwater glider ; Equatorial undercurrent
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  • 44
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    Observations and a model of net calcification declines in Palau's largest coral reef lagoon between 1992 and 2015 (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016147, doi:10.1029/2020JC016147.
    Description: Net ecosystem calcification (NEC) rates of Palau's largest lagoon and barrier reef system between 1992 and 2015 are estimated from sparse total alkalinity (TA) and salinity measurements and a tidal exchange model in which surface lagoon water transported offshore on the ebb tide is replaced by saltier (denser) ocean water that sinks to the bottom after entering the lagoon on the flood tide. Observed lagoon salinities are accurately reproduced by the model with no adjustable parameters. To accurately reproduce observed lagoon TA, NEC for the lagoon‐barrier reef system was 70 mmols m−2 day−1 from 1992 to 1998, 35 mmols m−2 day−1 from 1999 to 2012, and 25 mmols m−2 day−1 from 2013 to 2015. This indicates that Palau's largest lagoon and barrier reef system has not recovered, as of 2015, from the 50% decline in NEC in 1998 caused by the loss of coral cover following a severe bleaching event. The cause of the further decline in NEC in 2012–2013 is unclear. Lagoon residence times vary from 8 days during spring tides to 14 days during neap tides and drive substantial spring‐neap variations in lagoon TA (~25% of the mean salinity‐normalized ocean‐lagoon TA difference). Sparse measurements that do not resolve these spring‐neap variations can exhibit apparent long‐term variations in alkalinity that are not due to changes in NEC.
    Description: This work was partially supported by NSF award 1220529 to A.L.C., S.J.L., and K.E.F.S and NSF award 1737311 to A.L.C. and the Oceanography Department, Texas A&M University K.E.F.S.
    Description: 2021-01-06
    Keywords: Coral reef ; Calcification ; Bleaching ; Residence time ; Net ecosystem calcification ; Palau
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  • 45
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    Intercomparison of XRF core scanning results from seven labs and approaches to practical calibration (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Dunlea, A. G., Murray, R. W., Tada, R., Alvarez-Zarikian, C. A., Anderson, C. H., Gilli, A., Giosan, L., Gorgas, T., Hennekam, R., Irino, T., Murayama, M., Peterson, L. C., Reichart, G., Seki, A., Zheng, H., & Ziegler, M. Intercomparison of XRF core scanning results from seven labs and approaches to practical calibration. Geochemistry Geophysics Geosystems, 21(9), (2020): e2020GC009248, doi:10.1029/2020GC009248.
    Description: X‐ray fluorescence (XRF) scanning of marine sediment has the potential to yield near‐continuous and high‐resolution records of elemental abundances, which are often interpreted as proxies for paleoceanographic processes over different time scales. However, many other variables also affect scanning XRF measurements and convolute the quantitative calibrations of element abundances and comparisons of data from different labs. Extensive interlab comparisons of XRF scanning results and calibrations are essential to resolve ambiguities and to understand the best way to interpret the data produced. For this study, we sent a set of seven marine sediment sections (1.5 m each) to be scanned by seven XRF facilities around the world to compare the outcomes amidst a myriad of factors influencing the results. Results of raw element counts per second (cps) were different between labs, but element ratios were more comparable. Four of the labs also scanned a set of homogenized sediment pellets with compositions determined by inductively coupled plasma‐optical emission spectrometry (ICP‐OES) and ICP‐mass spectrometry (MS) to convert the raw XRF element cps to concentrations in two ways: a linear calibration and a log‐ratio calibration. Although both calibration curves are well fit, the results show that the log‐ratio calibrated data are significantly more comparable between labs than the linearly calibrated data. Smaller‐scale (higher‐resolution) features are often not reproducible between the different scans and should be interpreted with caution. Along with guidance on practical calibrations, our study recommends best practices to increase the quality of information that can be derived from scanning XRF to benefit the field of paleoceanography.
    Description: Funding for this research was provided by the U.S. National Science Foundation to R. W. M. (Grant 1130531). USSSP postcruise support was provided to Expedition 346 shipboard participants A. G. D., R. W. M., L. G., C. A. Z., and L. P. Portions of this material are based upon work supported while R. W. M. was serving at the National Science Foundation.
    Keywords: XRF scanning ; Quantitative XRF ; Paleoceanography ; Sedimentary geochemistry ; XRF calibration ; XRF intercomparison
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  • 46
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    Enormous lithium isotopic variations of abyssal peridotites reveal fast cooling and Melt/Fluid-rock interactions (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 125(9),(2020): e2020JB020393, doi:10.1029/2020JB020393.
    Description: Fast diffusing Li isotopes provide important insights into the “recent” transient events or processes for both modern and ancient times, but questions remain concerning the large Li isotopic variations of mantle peridotites, which greatly hampers their usage as a geochemical tracer. This study investigates in situ Li content and isotopic profiles of the constituent minerals of abyssal peridotites from the Gakkel Ridge and Southwest Indian Ridge. The complicated and large variations of Li isotopic profiles in Clinopyroxene (Cpx) and Orthopyroxene (Opx) indicate Li isotopic disequilibrium at millimeter scale. The negative correlations of a wide range of Li contents (0.5 to 6.5 ppm) and δ7Li values (−10 to +20‰) of olivine, Opx and Cpx grains/relicts, trace element zoning of Cpx, the occurrence of plagioclase, olivine serpentinization along cracks, together with numerical modeling demonstrate the observed Li characteristics to be a manifestation of high‐temperature mineral‐melt Li diffusion during melt impregnation overprinted by low‐temperature mineral‐fluid Li diffusion during dissolution and serpentinization. The preservation of the Li isotopic diffusion profiles requires rapid cooling of 0.3–5°C/year after final‐stage melt impregnation at the Moho boundary, which is consistent with the low temperature at very slow spreadin g ridges caused by conductive cooling. Compared with the well‐studied melt‐rock interaction process, our study indicates that low‐temperature fluid‐rock interaction can induce Li diffusion even in the visibly unaltered mineral relicts of partially altered rocks.
    Description: This study was financially supported by the National Science Foundation of China (grant no. 41872058) and the U.S. National Science Foundation grant.
    Description: 2021-03-07
    Keywords: Li isotope ; Abyssal peridotite ; Isotope diffusion ; Melt‐rock interaction ; Fluid‐rock interaction
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  • 47
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    Ocean circulation and variability beneath Nioghalvfjerdsbrae (79 North Glacier) ice tongue (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016091, doi:10.1029/2020JC016091.
    Description: The floating ice tongue of 79 North Glacier, a major outlet glacier of the Northeast Greenland Ice Stream, has thinned by 30% since 1999. Earlier studies have indicated that long‐term warming of Atlantic Intermediate Water (AIW) is likely driving increased basal melt, causing the observed thinning. Still, limited ocean measurements in 79 North Fjord beneath the ice tongue have made it difficult to test this hypothesis. Here we use data from an Ice Tethered Mooring (ITM) deployed in a rift in the ice tongue from August 2016 to July 2017 to show that the subannual AIW temperature variability is smaller than the observed interannual variability, supporting the conclusion that AIW has warmed over the period of ice tongue thinning. In July 2017, the AIW at 500 m depth in the ice tongue cavity reached a maximum recorded temperature of 1.5°C. Velocity measurements reveal weak tides and a mean overturning circulation, which is likely seasonally enhanced by subglacial runoff discharged at the grounding line. Deep inflow of AIW and shallow export of melt‐modified water persist throughout the record, indicating year‐round basal melting of the ice tongue. Comparison with a mooring outside of the cavity suggests a rapid exchange between the cavity and continental shelf. Warming observed during 2016–2017 is estimated to drive a 33 ± 20% increase in basal melt rate near the ice tongue terminus and a 14 ± 2% increase near the grounding line if sustained.
    Description: Funding for the ITM was provided by the Grossman Family Foundation through the WHOI Development Office. M. R. L. is supported by a National Defense Science and Engineering Graduate Fellowship. N. L. B. is supported by a grant from the National Science Foundation (NSF OCE‐1536856).
    Description: 2021-02-10
    Keywords: 79 North ; Basal melt ; Fjord ; Greenland ; Ice ocean interaction ; Ice shelf
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  • 48
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    The air-sea response during Hurricane Irma's (2017) rapid intensification over the Amazon-Orinoco River plume as measured by atmospheric and oceanic observations (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Atmospheres 125(18), (2020): e2019JD032368, doi:10.1029/2019JD032368.
    Description: Hurricane Irma (2017) underwent rapid intensification (RI) while passing over the Amazon‐Orinoco River plume in the tropical Atlantic. The freshwater discharge from the plume creates a vertical salinity gradient that suppresses turbulent heat flux from the cool, ocean subsurface. The stability within the plume reduces sea surface temperature (SST) cooling and promotes energetic air‐sea fluxes. Hence, it is hypothesized that this ocean feature may have facilitated Irma's RI through favorable upper ocean conditions. This hypothesis is validated using a collection of atmospheric and oceanic observations to quantify how the ocean response influences surface flux and atmospheric boundary layer thermodynamics during Hurricane Irma's RI over the river plume. Novel aircraft‐deployed oceanic profiling floats highlight the detailed evolution of the ocean response during Irma's passage over the river plume. Analyses include quantifying the ocean response and identifying how it influenced atmospheric boundary layer temperature, moisture, and equivalent potential temperature (θE). An atmospheric boundary layer recovery analysis indicates that surface fluxes were sufficient to support the enhanced boundary layer θE (moist entropy) observed, which promotes inner‐core convection and facilitates TC intensification. The implicit influence of salinity stratification on Irma's intensity during RI is assessed using theoretical intensity frameworks. Overall, the findings suggest that the salinity stratification sustained SST during Irma's passage, which promoted energetic air‐sea fluxes that aided in boundary layer recovery and facilitated Irma's intensity during RI. Examination of the air‐sea coupling over this river plume, corresponding atmospheric boundary layer response, and feedback on TC intensity was previously absent in literature.
    Description: This research was performed while the corresponding author held an NRC Research Associateship Award at the U.S. Naval Research Lab, Monterey. Chen is supported by Office of Naval Research (ONR) grant N0001416WX00470. Sanabia is sponsored by ONR grants N0001416WX01384 and N0001416WX01262. Jayne is supported by National Oceanic and Atmospheric Administration (NOAA) grant NA13OAR4830233.The authors gratefully acknowledge the HRD scientists, NOAA AOC crews, U.S. Air Force crews, and U.S. Navy crews who were involved in the collection of both atmospheric and oceanic data. This research would not be possible without your efforts. We are thankful for helpful discussion and pre‐RI AXBT data provided by Jun Zhang (NOAA/HRD).
    Description: 2020-12-12
    Keywords: Hurricane Irma ; Air-sea interaction ; Atmospheric boundary layer ; River plume ; Tropical cyclone ; Upper ocean response
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    Understanding of contemporary regional sea-level change and the implications for the future (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Reviews of Geophysics 58(3), (2020): e2019RG000672, doi:10.1029/2019RG000672.
    Description: Global sea level provides an important indicator of the state of the warming climate, but changes in regional sea level are most relevant for coastal communities around the world. With improvements to the sea‐level observing system, the knowledge of regional sea‐level change has advanced dramatically in recent years. Satellite measurements coupled with in situ observations have allowed for comprehensive study and improved understanding of the diverse set of drivers that lead to variations in sea level in space and time. Despite the advances, gaps in the understanding of contemporary sea‐level change remain and inhibit the ability to predict how the relevant processes may lead to future change. These gaps arise in part due to the complexity of the linkages between the drivers of sea‐level change. Here we review the individual processes which lead to sea‐level change and then describe how they combine and vary regionally. The intent of the paper is to provide an overview of the current state of understanding of the processes that cause regional sea‐level change and to identify and discuss limitations and uncertainty in our understanding of these processes. Areas where the lack of understanding or gaps in knowledge inhibit the ability to provide the needed information for comprehensive planning efforts are of particular focus. Finally, a goal of this paper is to highlight the role of the expanded sea‐level observation network—particularly as related to satellite observations—in the improved scientific understanding of the contributors to regional sea‐level change.
    Description: The research was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration. The authors acknowledge support from the National Aeronautics and Space Administration under Grants 80NSSC17K0565, 80NSSC170567, 80NSSC17K0566, 80NSSC17K0564, and NNX17AB27G. A. A. acknowledges support under GRACE/GRACEFO Science Team Grant (NNH15ZDA001N‐GRACE). T. W. acknowledges support by the National Aeronautics and Space Administration (NASA) under the New (Early Career) Investigator Program in Earth Science (Grant: 80NSSC18K0743). C. G. P was supported by the J. Lamar Worzel Assistant Scientist Fund and the Penzance Endowed Fund in Support of Assistant Scientists at the Woods Hole Oceanographic Institution.
    Keywords: Sea level ; Satellite observations ; Remote sensing
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  • 50
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    Fate of internal waves on a shallow shelf (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(5), (2020): e2019JC015377, doi:10.1029/2019JC015377.
    Description: Internal waves strongly influence the physical and chemical environment of coastal ecosystems worldwide. We report novel observations from a distributed temperature sensing (DTS) system that tracked the transformation of internal waves from the shelf break to the surf zone over a narrow shelf slope region in the South China Sea. The spatially continuous view of temperature fields provides a perspective of physical processes commonly available only in laboratory settings or numerical models, including internal wave reflection off a natural slope, shoreward transport of dense fluid within trapped cores, and observations of internal rundown (near‐bed, offshore‐directed jets of water preceding a breaking internal wave). Analysis shows that the fate of internal waves on this shelf—whether transmitted into shallow waters or reflected back offshore—is mediated by local water column density structure and background currents set by the previous shoaling internal waves, highlighting the importance of wave‐wave interactions in nearshore internal wave dynamics.
    Description: We are grateful for the support of the Dongsha Atoll Research Station (DARS) and the Dongsha Atoll Marine National Park, whose efforts made this research possible. The authors would also like to thank A. Hall, S. Tyler, and J. Selker from the Center for Transformative Environmental Monitoring Programs (CTEMPs) funded by the National Science Foundation (EAR awards 1440596 and 1440506), G. Lohmann from WHOI, A. Safaie from UC Irvine, G. Wong, L. Hou, F. Shiah, and K. Lee from Academia Sinica for providing logistical and field support, as well as E. Pawlak, S. Lentz, B. Sanders, and S. Grant for equipment, and B. Raubenheimer, S. Elgar, R. Walter and D. Lucas for informative discussions that improved this work. We acknowledge the US Army Research Laboratory DoD Supercomputing Resource Center for computer time on Excalibur, which was used for the numerical simulations in this work. Funding for this work supported by Academia Sinica and for K.D. and E.R. from NSF‐OCE 1753317 and for O.F., J.R., and R.A. from ONR Grant 1182789‐1‐TDZZM. A portion of this work (R.A.) was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE‐AC52‐07NA27344.
    Description: 2020-10-21
    Keywords: Internal waves ; Distributed temperature sensing ; Coral reef ; Internal wave reflection
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    From Andes to Amazon: assessing branched tetraether lipids as tracers for soil organic carbon in the Madre de Dios River system (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kirkels, F. M. S. A., Ponton, C., Galy, V., West, A. J., Feakins, S. J., & Peterse, F. From Andes to Amazon: assessing branched tetraether lipids as tracers for soil organic carbon in the Madre de Dios River system. Journal of Geophysical Research-Biogeosciences, 125(1), (2020): e2019JG005270, doi:10.1029/2019JG005270.
    Description: We investigate the implications of upstream processes and hydrological seasonality on the transfer of soil organic carbon (OC) from the Andes mountains to the Amazon lowlands by the Madre de Dios River (Peru), using branched glycerol dialkyl glycerol tetraether (brGDGT) lipids. The brGDGT signal in Andean soils (0.5 to 3.5 km elevation) reflects air temperature, with a lapse rate of −6.0 °C/km elevation (r 2 = 0.89, p 〈 0.001) and −5.6 °C/km elevation (r 2 = 0.89, p 〈 0.001) for organic and mineral horizons, respectively. The same compounds are present in river suspended particulate matter (SPM) with a lapse rate of −4.1 °C/km elevation (r 2 = 0.82, p 〈 0.001) during the wet season, where the offset in intercept between the temperature lapse rates for soils and SPM indicates upstream sourcing of brGDGTs. The lapse rate for SPM appears insensitive to an increasing relative contribution of 6‐methyl isomer brGDGTs produced within the river. River depth profiles show that brGDGTs are well mixed in the river and are not affected by hydrodynamic sorting. The brGDGTs accumulate relative to OC downstream, likely due to the transition of particulate OC to the dissolved phase and input of weathered soils toward the lowlands. The temperature‐altitude correlation of brGDGTs in Madre de Dios SPM contrasts with the Lower Amazon River, where the initial soil signature is altered by changes in seasonal in‐river production and variable provenance of brGDGTs. Our study indicates that brGDGTs in the Madre de Dios River system are initially soil derived and highlights their use to study OC sourcing in mountainous river systems.
    Description: The brGDGT analyses were supported by NWO‐Veni grant 863.13.016 to F.P. This material is based upon work supported by the US National Science Foundation under grant EAR‐1227192 to A. J. W. and S. J. F. for the river fieldwork and lipid purification. In Perú, we thank the Servicio Nacional de Áreas Naturales Protegidas por el Estado (SERNANP) and personnel of Manu and Tambopata National Parks for logistical assistance and permission to work in the protected areas. We thank the Explorers' Inn and the Pontifical Catholic University of Perú (PUCP), as well as the Amazon Conservation Association for the use of the Tambopata and Wayqecha Research Stations, respectively. For river fieldwork assistance, we thank M. Torres, A. Robles, and A. Cachuana. Soil samples were contributed by Andrew Nottingham and Patrick Meir. Logistical support was provided by Y. Malhi, J. Huaman, W. Huaraca Huasco, and other collaborators as part of the Andes Biodiversity and Ecosystems Research Group ABERG (www.andesresearch.org). We thank Dominika Kasjaniuk for technical support at Utrecht. Two anonymous reviewers have provided valuable comments that have helped to improve this manuscript. Geochemical and brGDGT data are available in the PANGAEA Data Repository (Kirkels et al., 2019) and can be accessed at https://doi.pangaea.de/10.1594/PANGAEA.906170
    Keywords: Bacterial membrane lipids (brGDGTs) ; Altitude‐temperature relations ; Amazon headwaters ; Soil‐river connectivity ; Riverine organic carbon transport, brGDGT proxy signal
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    How does viscosity contrast influence phase mixing and strain localization? (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 125 (2020): e2020JB020323, doi: 10.1029/2020JB020323.
    Description: Ultramylonites—intensely deformed rocks with fine grain sizes and well‐mixed mineral phases—are thought to be a key component of Earth‐like plate tectonics, because coupled phase mixing and grain boundary pinning enable rocks to deform by grain‐size‐sensitive, self‐softening creep mechanisms over long geologic timescales. In isoviscous two‐phase composites, “geometric” phase mixing occurs via the sequential formation, attenuation (stretching), and disaggregation of compositional layering. However, the effects of viscosity contrast on the mechanisms and timescales for geometric mixing are poorly understood. Here, we describe a series of high‐strain torsion experiments on nonisoviscous calcite‐fluorite composites (viscosity contrast, ηca/ηfl ≈ 200) at 500°C, 0.75 GPa confining pressure, and 10−6–10−4 s−1 shear strain rate. At low to intermediate shear strains (γ ≤ 10), polycrystalline domains of the individual phases become sheared and form compositional layering. As layering develops, strain localizes into the weaker phase, fluorite. Strain partitioning impedes mixing by reducing the rate at which the stronger (calcite) layers deform, attenuate, and disaggregate. Even at very large shear strains (γ ≥ 50), grain‐scale mixing is limited, and thick compositional layers are preserved. Our experiments (1) demonstrate that viscosity contrasts impede mechanical phase mixing and (2) highlight the relative inefficiency of mechanical mixing. Nevertheless, by employing laboratory flow laws, we show that “ideal” conditions for mechanical phase mixing may be found in the wet middle to lower continental crust and in the dry mantle lithosphere, where quartz‐feldspar and olivine‐pyroxene viscosity contrasts are minimized, respectively.
    Description: This work was funded through a National Science Foundation grant (EAR‐1352306) awarded to P. S., with additional support for A. J. C. provided by the McDonnell Center for the Space Sciences (Washington University in St. Louis), the J. Lamar Worzel Assistant Scientist Fund (WHOI), and the Penzance Endowed Fund in Support of Assistant Scientists (WHOI). Partial support for electron microscopy was provided by the Institute of Materials Science and Engineering (Washington University in St. Louis).
    Description: 2021-02-04
    Keywords: Ultramylonite ; Geometric mixing ; Strain partitioning ; Shear zone ; Calcite ; Torsion
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    Changes in the arctic ocean carbon cycle with diminishing ice cover (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in DeGrandpre, M., Evans, W., Timmermans, M., Krishfield, R., Williams, B., & Steele, M. Changes in the arctic ocean carbon cycle with diminishing ice cover. Geophysical Research Letters, 47(12), (2020): e2020GL088051, doi:10.1029/2020GL088051.
    Description: Less than three decades ago only a small fraction of the Arctic Ocean (AO) was ice free and then only for short periods. The ice cover kept sea surface pCO2 at levels lower relative to other ocean basins that have been exposed year round to ever increasing atmospheric levels. In this study, we evaluate sea surface pCO2 measurements collected over a 6‐year period along a fixed cruise track in the Canada Basin. The measurements show that mean pCO2 levels are significantly higher during low ice years. The pCO2 increase is likely driven by ocean surface heating and uptake of atmospheric CO2 with large interannual variability in the contributions of these processes. These findings suggest that increased ice‐free periods will further increase sea surface pCO2, reducing the Canada Basin's current role as a net sink of atmospheric CO2.
    Description: This research was made possible by grants from the NSF Arctic Observing Network program (ARC‐1107346, PLR‐1302884, PLR‐1504410, and OPP‐1723308). In addition, M. S. was supported by ONR (Grant 00014‐17‐1‐2545), NASA (Grant NNX16AK43G), and NSF (Grants PLR‐1503298 and OPP‐1751363).
    Keywords: Arctic Ocean ; Ice concentration ; Seawater CO2 ; Interannual variability ; Canada Basin ; Shipboard CO2 measurements
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    Using the sigma-pi diagram to analyze water masses in the northern South China Sea in spring (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(7), (2020): e2019JC015676, doi:10.1029/2019JC015676.
    Description: The temperature‐salinity (T‐S) diagram is widely used in water mass analysis, but the boundaries between water masses are vaguely distinguished by conventional T‐S‐based methods. Herein, we propose a new method based on the potential density‐potential spicity (sigma‐pi) diagram. The new method has been applied to the conductivity‐temperature‐depth data collected in the northern South China Sea during a spring cruise in 2011. The water masses in the study region are classified into 13 types according to both the standard deviation of potential spicity in each potential density layer and the water volumetric distribution in the sigma‐pi space. The results suggest that this new method is reasonable and robust for classifying water masses in the sigma‐pi space as compared to previous methods based on the traditional T‐S space. In addition, the westward intrusion of the West Pacific Ocean water to the northern South China Sea can be clearly detected by the tongue‐like potential spicity structure and relatively high potential spicity patches on potential density layers, further verifying the robustness and efficiency of our method in the water mass analysis.
    Description: This work was supported by the National Natural Science Foundation of China (91958203, 41776027, and 11732010) and the National Basic Research Program of China (2015CB954004 and 2009CB421208). Funding of Y.G.'s cotutelle doctoral research project by Région Hauts‐de‐France and Xiamen University is acknowledged. All the cruise participants are appreciated. We also thank the editor and anonymous reviewers for their valuable comments.
    Description: 2020-12-20
    Keywords: Water mass ; Spicity ; Northern South China Sea
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    Sea-level rise will drive divergent sediment transport patterns on fore reefs and reef flats, potentially causing erosion on Atoll Islands (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Earth Surface 125 (2020): e2019JF005446, doi: 10.1029/2019JF005446.
    Description: Atoll reef islands primarily consist of unconsolidated sediment, and their ocean‐facing shorelines are maintained by sediment produced and transported across their reefs. Changes in incident waves can alter cross‐shore sediment exchange and, thus, affect the sediment budget and morphology of atoll reef islands. Here we investigate the influence of sea level rise and projected wave climate change on wave characteristics and cross‐shore sediment transport across an atoll reef at Kwajalein Island, Republic of the Marshall Islands. Using a phase‐resolving model, we quantify the influence on sediment transport of quantities not well captured by wave‐averaged models, namely, wave asymmetry and skewness and flow acceleration. Model results suggest that for current reef geometry, sea level, and wave climate, potential bedload transport is directed onshore, decreases from the fore reef to the beach, and is sensitive to the influence of flow acceleration. We find that a projected 12% decrease in annual wave energy by 2100 CE has negligible influence on reef flat hydrodynamics. However, 0.5–2.0 m of sea level rise increases wave heights, skewness, and shear stress on the reef flat and decreases wave skewness and shear stress on the fore reef. These hydrodynamic changes decrease potential sediment inputs onshore from the fore reef where coral production is greatest but increase potential cross‐reef sediment transport from the outer reef flat to the beach. Assuming sediment production on the fore reef remains constant or decreases due to increasing ocean temperatures and acidification, these processes have the potential to decrease net sediment delivery to atoll islands, causing erosion.
    Description: This study was supported by the Strategic Environmental Research and Development Program through awards SERDP: RC‐2334, and RC‐2336. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
    Description: 2021-03-25
    Keywords: Coral atolls ; Fringing reefs ; Sediment transport ; Wave model ; Wave climate ; Sea level rise
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    The value of initial condition large ensembles to robust adaptation decision-making (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mankin, J. S., Lehner, F., Coats, S., & McKinnon, K. A. The value of initial condition large ensembles to robust adaptation decision-making. Earth's Future, 8(10), (2020): e2012EF001610, doi:10.1029/2020EF001610.
    Description: The origins of uncertainty in climate projections have major consequences for the scientific and policy decisions made in response to climate change. Internal climate variability, for example, is an inherent uncertainty in the climate system that is undersampled by the multimodel ensembles used in most climate impacts research. Because of this, decision makers are left with the question of whether the range of climate projections across models is due to structural model choices, thus requiring more scientific investment to constrain, or instead is a set of equally plausible outcomes consistent with the same warming world. Similarly, many questions faced by scientists require a clear separation of model uncertainty and that arising from internal variability. With this as motivation and the renewed attention to large ensembles given planning for Phase 7 of the Coupled Model Intercomparison Project (CMIP7), we illustrate the scientific and policy value of the attribution and quantification of uncertainty from initial condition large ensembles, particularly when analyzed in conjunction with multimodel ensembles. We focus on how large ensembles can support regional‐scale robust adaptation decision‐making in ways multimodel ensembles alone cannot. We also acknowledge several recently identified problems associated with large ensembles, namely, that they are (1) resource intensive, (2) redundant, and (3) biased. Despite these challenges, we show, using examples from hydroclimate, how large ensembles provide unique information for the scientific and policy communities and can be analyzed appropriately for regional‐scale climate impacts research to help inform risk management in a warming world.
    Description: F. L. has been supported by the Swiss NSF (grant no. PZ00P2_174128), the NSF Division of Atmospheric and Geospace Sciences (grant no. AGS‐0856145, Amendment 87), and the Regional and Global Model Analysis (RGMA) component of the Earth and Environmental System Modeling Program of the U.S.Department of Energy’s Office of Biological & Environmental Research (BER) via NSF IA 1844590. This is SOEST publication no. 11115.
    Keywords: Large ensembles ; Robust decision‐making ; Internal variability ; Initial conditions ; Climate adaptation
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    Axial wind effects on stratification and longitudinal sediment transport in a convergent estuary during wet season (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015254, doi:10.1029/2019JC015254.
    Description: The Coupled Ocean‐Atmosphere‐Wave‐Sediment Transport (COAWST) modeling system was used to examine axial wind effects on vertical stratification and sediment transport in a convergent estuary. The model demonstrated that stratification dynamics in the upper estuary (Kelvin number 〈1; Ke= fB/√ g'hs) are dominated by longitudinal wind straining, whereas the dominant mechanism governing estuarine stratification in the lower estuary (Kelvin number ~1) is lateral wind straining. Barotropic advection contributes to seaward sediment transport and peaks during spring tides, whereas estuarine circulation causes landward sediment transport with a maximum during neap tides. Down‐estuary winds impose no obvious effects on longitudinal sediment flux, whereas up‐estuary winds contribute to enhanced seaward sediment flux by increasing the tidal oscillatory flux. The model also demonstrates that bottom friction is significantly influenced by vertical stratification over channel regions, which is indirectly affected by axial winds.
    Description: This research was funded by the National Natural Science Foundation of China (Grants 41576089, 51761135021, and 41890851), the National Key Research and Development Program of China (2016YFC0402603) and the Guangdong Provincial Water Conservancy Science and Technology Innovation Project (Grant 201719). We thank Professor Liangwen Jia at the Sun Yat‐sen University for his kindly providing the surficial sediment samples data in 2011. We also thank graduate students Guang Zhang and Yuren Chen from the Sun Yat‐sen University for their help in data analysis. We are grateful to two anonymous reviewers for their insightful comments to help improve this manuscript. The data related to this article is available online at the Zenodo website (https://zenodo.org/record/3606471).
    Description: 2020-07-17
    Keywords: Sediment transport ; Vertical stratification ; Wind effects ; China, Pearl River Delta ; COAWST model system
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    A turbulence-resolving numerical investigation of wave-supported gravity flows (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015220, doi:10.1029/2019JC015220.
    Description: Wave‐supported gravity flows (WSGFs) have been identified as a key process driving the offshore delivery of fine sediment across continental shelves. However, our understanding on the various factors controlling the maximum sediment load and the resulting gravity current speed remains incomplete. We adopt a new turbulence‐resolving numerical model for fine sediment transport to investigate the formation, evolution, and termination of WSGFs. We consider the simplest scenario in which fine sediments are supported by the wave‐induced fluid turbulence at a low critical shear stress of erosion over a flat sloping bed. Under the energetic wave condition reported on the Northern California Coast with a shelf slope of 0.005, simulation results show that WSGFs are transitionally turbulent and that the sediment concentration cannot exceed 30 kg/m urn:x-wiley:jgrc:media:jgrc23843:jgrc23843-math-0001 (g/L) due to the attenuation of turbulence by the sediment‐induced stable density stratification. Wave direction is found to be important in the resulting gravity current intensity. When waves are in cross‐shelf direction, the downslope current has a maximum velocity of 1.2 cm/s, which increases to 2.1 cm/s when waves propagate in the along‐shelf direction. Further analysis on the wave‐averaged momentum balance confirms that when waves are parallel to the slope (cross‐shelf) direction, the more intense wave‐current interaction results in larger wave‐averaged Reynolds shear stress and thus in a smaller current speed. Findings from this study suggest that the more intense cross‐shelf gravity current observed in the field may be caused by additional processes, which may enhance the sediment‐carrying capacity of flow, such as the ambient current or bedforms.
    Description: This study is supported by NSF (OCE‐1537231 and OCE‐1924532) and Office of Naval Research (N00014‐17‐1‐2796). Numerical simulations presented in this study were carried out using the Mills and Canviness clusters at University of Delaware, and the SuperMIC cluster at Louisiana State University via XSEDE (TG‐OCE100015). Z. Cheng would like to express thanks for the support of a postdoctoral scholarship from Woods Hole Oceanographic Institution. The source code and the case setup to reproduce the same results are publicly available via the repository maintained by GitHub: https://github.com/yueliangyi/TURBID (source code) and https://github.com/yueliangyi/TURBID/tree/master/spike/wave_supported_gravity_flow (case setup), respectively.
    Description: 2020-08-04
    Keywords: Wave‐supported gravity flows ; Turbulence‐resolving numerical simulation ; Wave direction ; Intermittently turbulent flow
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    River Inflow Dominates Methane Emissions in an Arctic Coastal System (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47 (2020): e2020GL087669, doi:10.1029/2020GL087669.
    Description: We present a year‐round time series of dissolved methane (CH4), along with targeted observations during ice melt of CH4 and carbon dioxide (CO2) in a river and estuary adjacent to Cambridge Bay, Nunavut, Canada. During the freshet, CH4 concentrations in the river and ice‐covered estuary were up to 240,000% saturation and 19,000% saturation, respectively, but quickly dropped by 〉100‐fold following ice melt. Observations with a robotic kayak revealed that river‐derived CH4 and CO2 were transported to the estuary and rapidly ventilated to the atmosphere once ice cover retreated. We estimate that river discharge accounts for 〉95% of annual CH4 sea‐to‐air emissions from the estuary. These results demonstrate the importance of resolving seasonal dynamics in order to estimate greenhouse gas emissions from polar systems.
    Description: All data generated by the authors that were used in this article are available on PANGAEA (https://doi.org/10.1594/PANGAEA.907159) and model code for estimating CH4 transport is available on GitHub (https://doi.org/10.5281/zenodo.3785893). We acknowledge the use of imagery from the NASA Worldview application (https://worldview.earthdata.nasa.gov), part of the NASA Earth Observing System Data and Information System (EOSDIS), and data from Ocean Networks Canada, and Environment Canada. We thank everyone involved in the fieldwork including C. Amegainik, Y. Bernard, A. Cranch, F. Emingak, S. Marriott, and A. Pedersen. Laboratory analysis and experiments were performed by A. Cranch, R. McCulloch, A. Morrison, and Z. Zheng. We thank J. Brinckerhoff, the Arctic Research Foundation, and the staff of the Canadian High Arctic Research Station for support with field logistics. Funding for the work was provided by MEOPAR NCE funding to B. Else, a WHOI Interdisciplinary Award to A. Michel., D. Nicholson. and S. Wankel, and Canadian NSERC grants to P. Tortell. and B. Else. Authors received fellowships, scholarships, and travel grants including an NSERC postdoctoral fellowship to C. Manning, an NDSEG fellowship to V. Preston, NSERC PGS‐D and Izaak Walton Killam Pre‐Doctoral scholarships to S. Jones, and Northern Scientific Training Program funds (Polar Knowledge Canada, administered by the Arctic Institute of North America, University of Calgary) to S. Jones and P. Duke. We also thank Polar Knowledge Canada (POLAR) and Nunavut Arctic College for laboratory space and field logistics support.
    Description: 2020-10-23
    Keywords: Greenhouse gases ; Biogeochemistry ; Arctic coastal waters ; Biogeochemical sensing ; Seasonal cycles ; Methane
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    The land-sea breeze of the Red Sea: observations, simulations, and relationships to regional moisture transport (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Davis, S. R., Farrar, J. T., Weller, R. A., Jiang, H., & Pratt, L. J. The land-sea breeze of the Red Sea: observations, simulations, and relationships to regional moisture transport. Journal of Geophysical Research-Atmospheres, 124, (2019): 13803-13825, doi: 10.1029/2019JD031007.
    Description: Unique in situ observations of atmospheric conditions over the Red Sea and the coastal Arabian Peninsula are examined to study the dynamics and regional impacts of the local land‐sea breeze cycle (LSBC). During a 26‐month data record spanning 2008–2011, observed LSBC events occurred year‐round, frequently exhibiting cross‐shore wind velocities in excess of 8 m/s. Observed onshore and offshore features of both the land‐ and sea‐breeze phases of the cycle are presented, and their seasonal modulation is considered. Weather Research and Forecasting climate downscaling simulations and satellite measurements are used to extend the analysis. In the model, the amplitude of the LSBC is significantly larger in the vicinity of the steeper terrain elements encircling the basin, suggesting an enhancement by the associated slope winds. Observed and simulated conditions also reflected distinct gravity‐current characteristics of the intrinsic moist marine air mass during both phases of the LSBC. Specifically, the advance and retreat of marine air mass was directly tied to the development of internal boundary layers onshore and offshore throughout the period of study. Convergence in the lateral moisture flux resulting from this air mass ascending the coastal topography (sea‐breeze phase) as well as colliding with air masses from the opposing coastline (land‐breeze phase) further resulted in cumulous cloud formation and precipitation.
    Description: This study was supported by National Science Foundation (NSF) Grant OCE‐1435665 and National Aeronautics and Space Administration (NASA) Grants 80NSSC18K1494 and NNX14AM71G. Further support for Lawrence Pratt was provided by NSF Grant OCE‐1154641. The authors wish to thank Sarah Gille for insightful conversations related to this work. GLDAS data used in this study were acquired as part of the mission of NASA's Earth Science Division and archived and distributed by the Goddard Earth Sciences (GES) Data and Information Services Center (DISC). We further acknowledge the use of data and imagery from LANCE FIRMS operated by the NASA/GSFC/Earth Science Data and Information System (ESDIS) with funding provided by NASA/HQ. The in situ data from the WHOI/KAUST mooring is available at a WHOI repository (http://uop.whoi.edu/projects/kaust/form.php) for academic and research purposes. The mooring data collected during the WHOI‐KAUST collaboration was made possible by awards USA00001, USA00002, and KSA00011 to WHOI by the KAUST in the Kingdom of Saudi Arabia. The buoy and tower data collection was a result of the work of the WHOI Upper Ocean Processes Group and staff at KAUST; John Kemp, Jason Smith, Paul Bouchard, Sean Whelan, Yasser Abualnaja, Yasser Kattan, and Abdulaziz Al‐Suwailem all made major contributions.
    Keywords: Sea‐breeze ; Land‐breeze ; Red Sea ; African coast ; Air‐sea ; Observations and modelling
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    Causes of oceanic crustal thickness oscillations along a 74-M Mid-Atlantic ridge flow line (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 20, (2019): 6123-6139, doi: 10.1029/2019GC008711.
    Description: Gravity, magnetic, and bathymetry data collected along a continuous 1,400‐km‐long spreading‐parallel flow line across the Mid‐Atlantic Ridge indicate significant tectonic and magmatic fluctuations in the formation of oceanic crust over a range of time scales. The transect spans from 28 Ma on the African Plate to 74 Ma on the North American plate, crossing the Mid‐Atlantic Ridge at 35.8°N. Gravity‐derived crustal thicknesses vary from 3–9 km with a standard deviation of 1.0 km. Spectral analysis of bathymetry and residual mantle Bouguer anomaly show a diffuse power at 〉1 Myr and concurrent peaks at 390, 550, and 950 kyr. Large‐scale (〉10 km) mantle thermal and compositional heterogeneities, variations in upper mantle flow, and detachment faulting likely generate the 〉1 Myr diffuse power. The 550‐ and 950‐kyr peaks may reflect the presence of magma solitons and/or regularly spaced ~7.7 and 13.3 km short‐wavelength mantle compositional heterogeneities. The 390‐kyr spectral peak corresponds to the characteristic spacing of faults along the flow line. Fault spacing also varies over longer periods (〉10 Myr), which we interpret as reflecting long‐lived changes in the fraction of tectonically versus magmatically accommodated extensional strain. A newly discovered off‐axis oceanic core complex (Kafka Dome) found at 8 Ma on the African plate further suggests extended time periods of tectonically‐dominated plate separation. Fault spacing negatively correlates with gravity‐derived crustal thickness, supporting a strong link between magma input and fault style at mid‐ocean ridges.
    Description: Data and supplemental materials are available at the Woods Hole Open Access Server (doi.org/10.26025/1912/24796). We would like to thank the Woods Hole Oceanographic Institution, National Science Foundation, Naval Oceanographic Office, and the captain and crew of R/V Neil Armstrong for making the SCARF cruise possible. We would also like to thank Eboné Pierce for her help during the cruise. We thank Meghan Jones for advice using MBSystem. We also thank Maurice Tivey, John Greene, and Masako Tominaga for advice on processing the magnetic data sets. We would like to thank Peter Huybers for sharing his spectral analysis codes. We would like to thank Rob Sohn for his help on interpreting the spectral analysis. We would like to thank Del Bohnenstiel, Milena Marjanović, one anonymous reviewer, and Editor Thorsten Becker for their very helpful comments that improved this manuscript. Funding was provided for this research by NSF OCE‐14‐58201.
    Description: 2020-05-19
    Keywords: Ocean crustal thickness ; Faulting style ; Mid‐Atlantic Ridge ; Spectral analysis ; Oceanic core complex ; Magma input variation
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    A characterization of periodicity in the voltage time series of a riometer (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Space Physics 125(7), (2020): e2019JA027160, doi:10.1029/2019JA027160.
    Description: This paper reveals unprecedented periodicity in the voltage series of relative ionospheric opacity meters (riometers) of the Canadian Riometer Array (CRA). In quiet times, the riometer voltage series is accurately modeled by a stochastic process whose components include both a six term expansion in harmonic functions and some amplitude modulated modes of lower signal to noise ratio (SNR). In units of cycles per sidereal day (cpsd), the frequencies of the six harmonic functions lie within 0.01 cpsd of an integer. Earth's rotation induces a splitting of the low SNR components, resulting in the appearance of nine multiplets in standardized power spectrum estimates of the considered CRA voltage series. A second feature of these spectrum estimates is a 6 min periodic element appearing in both the CRA voltage series and the proton mass density series of the Advanced Composition Explorer (ACE). Spectral peak frequencies have been detected, which lie near established solar mode frequency estimates. In addition, some of these peak frequency estimates are coincident with peak frequency estimates of the standardized power spectra for the time series of proton mass density and interplanetary magnetic field strength (IMF) at ACE.
    Description: “Marshall_Francois_Supporting_Information_JGR_2019.pdf” contains a summary of the supporting information. The 1 hr sampled F10.7 series was obtained from DRAO (National Research Council, 2017). The three MAG time series of IMF strength were acquired from The ACE Science Center (2007), while the SWEPAM time series of proton mass density was acquired from Space Weather Prediction Center, National Oceanic and Atmospheric Administration (2018). The relevant data sets for the analysis of this paper are included in Marshall (2019). This work was supported by the Natural Sciences and Engineering Research Council of Canada (NSERC), Canadian Statistical Sciences Institute (CANSSI), Bonneyville Power Authority, and Queen's University. David J. Thomson, the official holder of the grants and contracts, provided research and conference funding to advance this project. Special thanks to Ken F. Tapping (DRAO of NRCan) for his guidance in finding the data sets relevant to solar radio emissions. Glen Takahara, of the Department of Mathematics and Statistics at Queen's University, suggested exploring different data sets to confirm the modal origin of spectral peaks observed in the Ottawa riometer of the CRA. Alessandra A. Pacini of the Arecibo Observatory recommended checking to see if some of the modes could have been driven by the harmonics of Earth's rotation. Frank Vernon of the Institute of Geophysics and Planetary Physics at Scripps Institution of Oceanography confirmed how seismic data could be expected to reveal coincident spectral peaks at the detected frequencies in the riometer standardized spectra.
    Description: 2020-10-20
    Keywords: Periodic elements ; Riometer ; Multitaper spectral analysis ; Cosmic noise ; Sidereal day ; Solar modes
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    Meltwater-enhanced nutrient export from Greenland's Glacial Fjords: a sensitivity analysis (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(7), (2020): e2020JC016185, doi:10.1029/2020JC016185.
    Description: As mass loss from the Greenland Ice Sheet accelerates, this modeling study considers how meltwater inputs to the ocean can impact marine ecosystems using a simplified fjord scenario. At marine‐terminating glaciers in Greenland fjords, meltwater can be delivered far below the sea surface, both as subglacial runoff (from atmosphere‐driven surface melt) and as basal melt (from ocean heat). Such delivery can result in buoyancy‐driven upwelling and the upward entrainment of nutrient‐rich deep water, which can support phytoplankton growth in fjord surface waters. For this study, we use an idealized fjord‐scale model to investigate which properties of glaciers and fjords govern the transport of buoyantly upwelled nutrients from fjords. We model the influence of fjord geometry, hydrology, wind, tides, and phytoplankton growth within the fjord on meltwater‐driven nutrient export to the ocean. We use the Regional Ocean Modeling System (ROMS) coupled to a buoyant plume model and a biogeochemical model to simulate physical and biogeochemical processes within an idealized tidewater glacial fjord. Results show that meltwater‐driven nutrient export increases with larger subglacial discharge rates and deeper grounding lines, features that are both likely to change with continued ice sheet melting. Nutrient export decreases with longer residence times, allowing greater biological drawdown. While the absence of a coastal current in the model setup prevents the downstream advection of exported nutrients, results suggest that shelf‐forced flows could influence nutrient residence time within fjords. This simplified model highlights key uncertainties requiring further observation to understand ecological impacts of Greenland mass loss.
    Description: This project was supported by a University of Georgia Presidential Scholarship and NSF Graduate Research Fellowship (GRFP) (to HO), NASA‐IDS NNX14AD98G, and by NASA Physical Oceanography program (80NSSC18K0766).
    Description: 2020-12-22
    Keywords: Fjord circulation ; Subglacial discharge plumes ; Nutrient export ; Greenland marine‐terminating glaciers ; Biogeochemical cycling ; Primary productivity
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    A machine-learning-based model for water quality in coastal waters, taking dissolved oxygen and hypoxia in Chesapeake Bay as an example (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Water Resources Research 56(9), (2020): e2020WR027227, doi:10.1029/2020WR027227.
    Description: Hypoxia is a big concern in coastal waters as it affects ecosystem health, fishery yield, and marine water resources. Accurately modeling coastal hypoxia is still very challenging even with the most advanced numerical models. A data‐driven model for coastal water quality is proposed in this study and is applied to predict the temporal‐spatial variations of dissolved oxygen (DO) and hypoxic condition in Chesapeake Bay, the largest estuary in the United States with mean summer hypoxic zone extending about 150 km along its main axis. The proposed model has three major components including empirical orthogonal functions analysis, automatic selection of forcing transformation, and neural network training. It first uses empirical orthogonal functions to extract the principal components, then applies neural network to train models for the temporal variations of principal components, and finally reconstructs the three‐dimensional temporal‐spatial variations of the DO. Using the first 75% of the 32‐year (1985–2016) data set for training, the model shows good performance for the testing period (the remaining 25% data set). Selection of forcings for the first mode points to the dominant role of streamflow in controlling interannual variability of bay‐wide DO condition. Different from previous empirical models, the approach is able to simulate three‐dimensional variations of water quality variables and it does not use in situ measured water quality variables but only external forcings as model inputs. Even though the approach is used for the hypoxia problem in Chesapeake Bay, the methodology is readily applicable to other coastal systems that are systematically monitored.
    Description: This is contribution No. 3934 of the Virginia Institute of Marine Science, College of William and Mary.
    Description: 2021-02-25
    Keywords: Big‐data analysis ; EOF ; Neural network ; Machine‐learning ; Hypoxic volume
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    Ocean-atmosphere trajectories of extended drought in southwestern North America (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Atmospheres 124(16), (2019): 8953-8971, doi: 10.1029/2019JD030424.
    Description: Multiyear droughts are a common occurrence in southwestern North America (SWNA), but it is unclear what causes these persistent dry periods. The ocean‐atmosphere conditions coinciding with droughts have traditionally been studied using correlation and composite methods, which suggest that cool conditions in the tropical Pacific are associated with SWNA droughts and warm conditions are associated with wet periods in SWNA. Nevertheless, the extent to which multiyear droughts are truly consistent with this paradigm remains unknown. This is, in part, because the temporal trajectory of ocean‐atmosphere conditions during these dry periods have not been sufficiently characterized. Here we examine the continuum of ocean‐atmosphere trajectories before, during, and after multiyear droughts in SWNA using observation‐based data and an ensemble of climate model simulations from the Community Earth System Model. An examination of sea surface temperature patterns at the beginning, middle, and end of SWNA droughts shows that an El Niño event tends to precede SWNA droughts, a cool tropical Pacific occurs during droughts, and central Pacific El Niño events end droughts. However, moderate El Niño events can occur in the middle of persistent droughts, so a warm tropical Pacific does not always end these dry periods. These findings are important for drought predictability and emphasize the need to improve simulations of the magnitude, life cycle, and frequency of occurrence of El Niño events.
    Description: L. Parsons thanks the Washington Research Foundation for funding support and thanks R. Jnglin Wills and D. Battisti for suggestions related to tropical Pacific‐SWNA comparisons. We thank B. Otto‐Bliesner and acknowledge the CESM1(CAM5) Last Millennium Ensemble Community Project and supercomputing resources provided by NSF/CISL/Yellowstone. Support for the Twentieth Century Reanalysis Project version 2c data set is provided by the U.S. Department of Energy, Office of Science Biological and Environmental Research (BER), and by the National Oceanic and Atmospheric Administration Climate Program Office. GPCC Precipitation data provided by the NOAA/OAR/ESRL PSD, Boulder, Colorado, USA, from their Web site (https://www.esrl.noaa.gov/psd/).
    Description: 2020-02-06
    Keywords: Drought ; Climate dynamics ; Teleconnections ; Southwest ; Climate model ; Tropical Pacific
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    Marine ice cliff instability mitigated by slow removal of ice shelves (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 46, (2019): 12108-12116, doi: 10.1029/2019GL084183.
    Description: The accelerated calving of ice shelves buttressing the Antarctic Ice Sheet may form unstable ice cliffs. The marine ice cliff instability hypothesis posits that cliffs taller than a critical height (~90 m) will undergo structural collapse, initiating runaway retreat in ice‐sheet models. This critical height is based on inferences from preexisting, static ice cliffs. Here we show how the critical height increases with the timescale of ice‐shelf collapse. We model failure mechanisms within an ice cliff deforming after removal of ice‐shelf buttressing stresses. If removal occurs rapidly, the cliff deforms primarily elastically and fails through tensile‐brittle fracture, even at relatively small cliff heights. As the ice‐shelf removal timescale increases, viscous relaxation dominates, and the critical height increases to ~540 m for timescales greater than days. A 90‐m critical height implies ice‐shelf removal in under an hour. Incorporation of ice‐shelf collapse timescales in prognostic ice‐sheet models will mitigate the marine ice cliff instability, implying less ice mass loss.
    Description: We thank Greg Hirth, Brad Hager, and Bill Durham for their useful comments. The manuscript benefited from constructive reviews by Dan Martin and an anonymous reviewer and editorial handling by Mathieu Morlighem. This work was supported by an NSF‐GRFP (Fiona Clerc), and NSF Awards OPP‐1739031 (Brent Minchew) and EAR‐19‐03897 (Mark Behn). Code reproducing our results is found at this address (https://doi.org/10.5281/zenodo.3379074).
    Description: 2020-04-21
    Keywords: Marine ice cliff ; Buttressing ice shelf ; Antarctic Ice Sheet ; Ice‐shelf collapse ; Brittle‐ductile transition ; Marine ice cliff instability
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    Retrieving sea ice drag coefficients and turning angles from in situ and satellite observations using an inverse modeling framework (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124(8), (2019): 6388-6413, doi: 10.1029/2018JC014881.
    Description: For ice concentrations less than 85%, internal ice stresses in the sea ice pack are small and sea ice is said to be in free drift. The sea ice drift is then the result of a balance between Coriolis acceleration and stresses from the ocean and atmosphere. We investigate sea ice drift using data from individual drifting buoys as well as Arctic‐wide gridded fields of wind, sea ice, and ocean velocity. We perform probabilistic inverse modeling of the momentum balance of free‐drifting sea ice, implemented to retrieve the Nansen number, scaled Rossby number, and stress turning angles. Since this problem involves a nonlinear, underconstrained system, we used a Monte Carlo guided search scheme—the Neighborhood Algorithm—to seek optimal parameter values for multiple observation points. We retrieve optimal drag coefficients of CA=1.2×10−3 and CO=2.4×10−3 from 10‐day averaged Arctic‐wide data from July 2014 that agree with the AIDJEX standard, with clear temporal and spatial variations. Inverting daily averaged buoy data give parameters that, while more accurately resolved, suggest that the forward model oversimplifies the physical system at these spatial and temporal scales. Our results show the importance of the correct representation of geostrophic currents. Both atmospheric and oceanic drag coefficients are found to decrease with shorter temporal averaging period, informing the selection of drag coefficient for short timescale climate models.
    Description: The scripts developed for this publication are available at the GitHub (https://github.com/hheorton/Freedrift_inverse_submit). The Neighborhood Algorithm was developed and kindly supplied by M. Sambridge (http://www.iearth.org.au/codes/NA/). Ice‐Tethered Profiler data are available via the Ice‐Tethered Profiler program website (http://whoi.edu/itp). Buoy data were collected as part of the Marginal Ice Zone program (www.apl.washington.edu/miz) funded by the U.S. Office of Naval Research. The ice drift data were kindly supplied by N. Kimura. H. H. was funded by the Natural Environment Research Council (Grants NE/I029439/1 and NE/R000263/1). M. T. was partially funded by the SKIM Mission Science Study (SKIM‐SciSoc) Project ESA RFP 3‐15456/18/NL/CT/gp. T. A. was supported at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration. M. T. and H. H. thank Dr. Nicolas Brantut for early discussions on the implementation of inverse modeling techniques.
    Description: 2020-02-14
    Keywords: Sea ice drift ; Observations ; Inverse modeling ; Drag coefficients
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    Stormquakes (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 46 (2019): 12909-12918, doi: 10.1029/2019GL084217.
    Description: Seismic signals from ocean‐solid Earth interactions are ubiquitously recorded on our planet. However, these wavefields are typically incoherent in the time domain limiting their utilization for understanding ocean dynamics or solid Earth properties. In contrast, we find that during large storms such as hurricanes and Nor'easters the interaction of long‐period ocean waves with shallow seafloor features located near the edge of continental shelves, known as ocean banks, excites coherent transcontinental Rayleigh wave packets in the 20‐ to 50‐s period band. These “stormquakes” migrate coincident with the storms but are effectively spatiotemporally focused seismic point sources with equivalent earthquake magnitudes that can be greater than 3.5. Stormquakes thus provide new coherent sources to investigate Earth structure in locations that typically lack both seismic instrumentation and earthquakes. Moreover, they provide a new geophysical observable with high spatial and temporal resolution with which to investigate ocean wave dynamics during large storms.
    Description: We would like to thank the Editor Dr. Hayes, Dr. Ekström, Dr. McNamara, Dr. Pollitz, and the other two reviewers for their constructive suggestions, which have led to improvements in our paper. We would also like to thank Dr. Ardhuin and Dr. Gualtieri for helpful discussions, and specifically Dr. Ardhuin for sharing codes to model ocean wave and seafloor topography interference (Ardhuin et al., 2015). The seismic data were provided by Data Management Center (DMC) of the Incorporated Research Institutions for Seismology (IRIS). The facilities of IRIS Data Services, and specifically the IRIS Data Management Center, were used for access to waveforms, related metadata, and/or derived products used in this study. IRIS Data Services are funded through the Seismological Facilities for the Advancement of Geoscience and EarthScope (SAGE) Proposal of the National Science Foundation under Cooperative Agreement EAR‐1261681. The earthquake catalogs were downloaded from the Global Centroid Moment Tensor GCMT project (Ekström et al., 2012), and the International Seismological Centre (ISC) (International Seismological Centre, 2013). The ocean wave models are obtained from the Environmental Modeling Center at the National Weather Service (NWS) of the National Oceanic and Atmospheric Administration (NOAA; Tolman, 2014). The hurricane tracks are obtained from the National Hurricane Center (NHC) of NOAA (Landsea & Franklin, 2013). The topography is obtained from the ETOPO1 Arc‐Minute Global Relief Model provided by the National Geophysical Data Center (NGDC) of NOAA. Toponymic information, including undersea features, are obtained from the GEONet Names Server (GNS), which is based on the Geographic Names Database, containing official standard names approved by the U.S. Board on Geographic Names and maintained by the National Geospatial‐Intelligence Agency (www.nga.mil, last accessed 21 March 2019). The Bahamas Banks geographic polygons are obtained from the U.S. Geological Survey (USGS) Geographic Names Information System (GNIS) database of names. The AELUMA code can be obtained on request through the IRIS data service product website at https://ds.iris.edu/ds/products/infrasound-aeluma/request(last accessed 21 March 2019). W. F. acknowledges support from the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Weston Howland Jr. Postdoctoral Scholarship. C. D. G and M. A. H. H acknowledge support from NSF Grant EAR‐1358520. The processed data are available from the authors upon request.
    Description: 2020-04-14
    Keywords: Stormquake ; Surface wave ; USArray ; Hurriance ; Nor'Easter ; Ambient noise
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    On the origin of aged sedimentary organic matter along a river-shelf-deep ocean transect (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 124(8), (2019): 2582-2594, doi: 10.1029/2019JG005107.
    Description: To assess the influences of carbon sources and transport processes on the 14C age of organic matter (OM) in continental margin sediments, we examined a suite of samples collected along a river‐shelf‐deep ocean transect in the East China Sea (ECS). Ramped pyrolysis‐oxidiation was conducted on suspended particulate matter in the Yangtze River and on surface sediments from the ECS shelf and northern Okinawa Trough. 14C ages were determined on OM decomposition products within different temperature windows. These measurements suggest that extensive amounts of pre‐old (i.e., millennial age) organic carbon (OC) are subject to degradation within and beyond the Yangtze River Delta, and this process is accompanied by an exchange of terrestrial and marine OM. These results, combined with fatty acid concentration data, suggest that both the nature and extent of OM preservation/degradation as well as the modes of transport influence the 14C ages of sedimentary OM. Additionally, we find that the age of (thermally) refractory OC increases during across‐shelf transport and that the age offset between the lowest and highest temperature OC decomposition fractions also increases along the shelf‐to‐trough transect. Amplified interfraction spread or 14C heterogeneity is the greatest in the Okinawa Trough. Aged sedimentary OM across the transect may be a consequence of several reasons including fossil OC input, selective degradation of younger OC, hydrodynamic sorting processes, and aging during lateral transport. Consequently, each of them should be considered in assessing the 14C results of sedimentary OM and its implications for the carbon cycle and interpretation of sedimentary records.
    Description: This study was supported by Doc. Mobility Fellowship (P1EZP2_159064; R. B.) from the Swiss National Science Foundation (SNSF). This study was also supported by SNF “CAPS‐LOCK” project 200021_140850 (T. I. E.), by the National Natural Science Foundation of China (NSFC; grants 41520104009 and 41630966, M. Z.), and by the “111” project (B13030). We are grateful for support of the NOSAMS staff in the execution of this project. We also appreciate the assistance from Yushuang Zhang (Ocean University of China) at NOSAMS and members of the Laboratory for Ion Beam Physics at ETH Zurich for AMS measurements. We acknowledge Lei Xing, Haidong Zhang, Guodong Song, Meng Yu, Yonghao Jia, and Shanshan Duan (Ocean University of China) for sampling assistance on the cruises. Assistance at sea by the crews of R/V Dongfanghong II and R/V Hakuhu Maru is also acknowledged. Readers can access or find the data from figures and tables in the supporting information.
    Keywords: Radiocarbon ; Carbon cycle ; Sediments ; Organic carbon ; Hydrodynamic processes
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    Application of B, mg, li, and sr isotopes in acid-sulfate vent fluids and volcanic rocks as tracers for fluid-rock interaction in back-arc hydrothermal systems (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wilckens, F. K., Reeves, E. P., Bach, W., Seewald, J. S., & Kasemann, S. A. Application of B, mg, li, and sr isotopes in acid-sulfate vent fluids and volcanic rocks as tracers for fluid-rock interaction in back-arc hydrothermal systems. Geochemistry Geophysics Geosystems, 20, (2019): 5849-5866, doi: 10.1029/2019GC008694.
    Description: The Manus Basin hosts a broad range of vent fluid compositions typical for arc and back‐arc settings, ranging from black smoker to acid‐sulfate styles of fluid venting, as well as novel intermediate temperature and composition “hybrid” smokers. We investigated B, Li, Mg, and Sr concentrations and isotopic compositions of these different fluid types as well as of fresh and altered rocks from the same study area to understand what controls their compositional variability. In particular, the formation of acid‐sulfate and hybrid smoker fluids is still poorly understood, and their high Mg concentrations are explained either by dissolution of Mg‐bearing minerals in the basement or by mixing between unmodified seawater and magmatic fluids. Mg isotope ratios of the acid‐sulfate fluids from the Manus Basin are seawater‐like, which supports the idea that acid‐sulfate fluids in this study area predominantly form by mixing between unmodified seawater and a Mg‐free magmatic fluid. Changes in the B, Li, and Sr isotope ratios relative to seawater indicate water‐rock interaction in all acid‐sulfate fluids. Further, the combination of δ7Li with B concentrations of the same fluids links changes in δ7Li to changes in (1) basement alteration, (2) water‐to‐rock ratios during water‐rock interaction, and/or (3) the reaction temperature. These isotope systems, thus, allow tracing of basement composition and acid‐sulfate‐driven alteration of the back‐arc crust and help increase our understanding of hydrothermal fluid‐rock interactions and the behavior of fluid‐mobile elements.
    Description: The authors would like to thank the crew of the R/V Melville and R/V Sonne as well as the technical groups of ROV Jason II and ROV MARUM‐QUEST. This study was part of MARUM project GB4 and was funded by the DFG‐Research Centre/Cluster of Excellence “The Ocean in the Earth System” at MARUM—Centre for Environmental Sciences, University of Bremen (EXC309/FZT15) and was supported from the German Research Foundation (DFG) Major Research Instrumentation Program (INST 144/308‐1). We would also like to thank Dionysis Foustoukos and an anonymous reviewer for the thorough reviews, which improved the manuscript a lot. The data reported in this paper are archived in Pangaea (https://doi.pangaea.de/10.1594/PANGAEA.908303).
    Keywords: Hydrothermal fluids ; Back‐arc ; Basement alteration ; Acid‐sulfate
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    Modeling the dispersion of dissolved natural gas condensates from the Sanchi incident (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124, (2019): 8439-8454, doi: 10.1029/2019JC015637.
    Description: An Iranian tanker with 136,000 tons of natural gas condensates collided with a freighter in the East China Sea in January 2018 and, after drifting ablaze for 8 days and over 200 km, capsized on the edge of the shelf near the Kuroshio Current. Different from the crude oil, the condensates consist of hydrocarbons that have relatively high solubility in seawater. We postulate that the leakage from the remaining condensate cargo at 110 m depth may result in a bottom layer of condensate‐enriched water in the vicinity of the resting tanker. A model is constructed in this study to simulate the dispersion of contaminated water through the processes of oceanic advection, diffusion, biodegradation, and volatilization. It is found that the scope and magnitude of the dispersion are most sensitive to the biodegradation. Even though the biodegradation time scale depends on several factors that are not well quantified in this region, using any value within the estimated range from a previous study results in significant contamination in the broad area. The dispersion is particularly effective in this incident because the tanker capsized near the Kuroshio Current—a fast‐moving western boundary current. The Kuroshio acts as a fast conduit to spread the contaminant to the east coast of Japan and the interior Pacific Ocean. In addition, we identify that the Tsushima Warm Current, a perennial flow into the Japan Sea, is the second major conduit for spreading the polluted water. This study indicates that dissolved hydrocarbons are the main environmental risk for maritime spills of natural gas condensates.
    Description: Chris Reddy at WHOI provided invaluable guidance at the beginning of this study. Jian Zhao at UMD participated in some early discussions and helped the model development. Lei Chen has been financially supported by China Scholarship Council to study at WHOI for 2 years as a WHOI guest student. Jiayan Yang's participation in this study has been supported by the Woods Hole Oceanographic Institution‐Ocean University of China (WHOI‐OUC) Collaborative Initiative and the W. Van Alan Clark Chair for Excellence in Oceanography from WHOI. This work is supported by National Natural Science Foundation of China major project (41490640, 41490643). The daily oceanic velocity field used in the model is Global Ocean Sea Physical Analysis and Forecasting Products distributed by CMEMS, which can be available online (http://marine.copernicus.eu/services‐portfolio/access‐to‐products/?option=com_csw&view=details&product_id=GLOBAL_ANALYSIS_FORECAST_PHY_001_024). The model output data are available freely from the database of ZENODO (https://zenodo.org/record/3405388#.XXk‐5yhKhPY).
    Description: 2020-05-11
    Keywords: Maritime spill ; Natural gas condensates ; Bio-degradation ; East China and Japan Seas ; Kuroshio Current ; Tsushima Warm Current
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    Three-dimensional structure of a cold-core Arctic eddy interacting with the Chukchi slope current (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scott, R. M., Pickart, R. S., Lin, P., Muenchow, A., Li, M., Stockwell, D. A., & Brearley, J. A. Three-dimensional structure of a cold-core Arctic eddy interacting with the Chukchi slope current. Journal of Geophysical Research: Oceans, 124, (2019): 8375-8391, doi: 10.1029/2019JC015523.
    Description: A rapid, high‐resolution shipboard survey, using a combination of lowered and expendable hydrographic measurements and vessel‐mounted acoustic Doppler current profiler data, provided a unique three‐dimensional view of an Arctic anti‐cyclonic cold‐core eddy. The eddy was situated 50‐km seaward of the Chukchi Sea shelfbreak over the 1,000 m isobath, embedded in the offshore side of the Chukchi slope current. The eddy core, centered near 150‐m depth, consisted of newly ventilated Pacific winter water which was high in nitrate and dissolved oxygen. Its fluorescence signal was due to phaeopigments rather than chlorophyll, indicating that photosynthesis was no longer active, consistent with an eddy age on the order of months. Subtracting out the slope current signal demonstrated that the eddy velocity field was symmetrical with a peak azimuthal speed of order 10 cm s−1. Its Rossby number was ~0.4, consistent with the fact that the measured cyclogeostrophic velocity was dominated by the geostrophic component. Different scenarios are discussed regarding how the eddy became embedded in the slope current, and what the associated ramifications are with respect to eddy spin‐down and ventilation of the Canada Basin halocline.
    Description: The authors are indebted to the crew of the USCGC Healy for making the eddy survey possible. Funding for the study was provided by the following sources: National Science Foundation Grants OPP‐1702371, OPP‐1733564, and PLR‐1303617 (RS, RP); OPP‐ 0125466 (DS); and OPP‐1604076 (AM). National Oceanic and Atmospheric Administration Grant NA14‐OAR4320158 (PL); National Natural Science Foundation of China Grants 41706025 and 41506018 (ML); Natural Environmental Research Council Grant NE/L011166/1 (AB). RS acknowledges the Challenger Society for helping facilitate the collaboration that resulted in this work. The data used in the study can be found at http://www.eol.ucar.edu/projects/sbi/all_data.shtml.
    Keywords: Three-dimensional ; Cold-core Arctic eddy ; Chuckchi Slope Current ; Newly ventilated Pacific water ; Anti-cyclonic
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  • 73
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    Evolution of Denmark Strait overflow cyclones and their relationship to overflow surges (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Almansi, M., Haine, T. W. N., Gelderloos, R., & Pickart, R. S. Evolution of Denmark Strait overflow cyclones and their relationship to overflow surges. Geophysical Research Letters, 47(4), (2020): e2019GL086759, doi:10.1029/2019GL086759.
    Description: Mesoscale features present at the Denmark Strait sill regularly enhance the volume transport of the Denmark Strait overflow (DSO). They are important for the Atlantic Meridional Overturning Circulation and ultimately, for the global climate system. Using a realistic numerical model, we find new evidence of the causal relationship between overflow surges (i.e., mesoscale features associated with high‐transport events) and DSO cyclones observed downstream. Most of the cyclones form at the Denmark Strait sill during overflow surges and, because of potential vorticity conservation and stretching of the water column, grow as they move equatorward. A fraction of the cyclones form downstream of the sill, when anticyclonic vortices formed during high‐transport events start collapsing. Regardless of their formation mechanism, DSO cyclones weaken starting roughly 150 km downstream of the sill, and potential vorticity is only materially conserved during the growth phase.
    Description: This material is based upon work supported by the National Science Foundation under Grants OCE‐1433448, OCE‐1633124, OCE‐1756361, and OCE‐1756863. The numerical model was run on the Maryland Advanced Research Computing Center (MARCC). Marcello Magaldi helped to configure the model. OceanSpy and several packages from the Pangeo software ecosystem have been used to postprocess the model output. The numerical solutions are publicly available on SciServer (http://sciserver.org), which is developed and administered by the Institute for Data Intensive Engineering and Science at Johns Hopkins University. Instructions for accessing the data set are available at this site (https://oceanspy.readthedocs.io). Two anonymous reviewers helped to improve the content of this manuscript.
    Keywords: Denmark Strait overflow ; DSO cyclones ; Boluses ; Pulses
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  • 74
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    A preindustrial sea-level rise hotspot along the Atlantic Coast of North America (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gehrels, W. R., Dangendorf, S., Barlow, N. L. M., Saher, M. H., Long, A. J., Woodworth, P. L., Piecuch, C. G., & Berk, K. A preindustrial sea-level rise hotspot along the Atlantic Coast of North America. Geophysical Research Letters, 47(4), (2020): e2019GL085814, doi:10.1029/2019GL085814.
    Description: The Atlantic coast of North America north of Cape Hatteras has been proposed as a “hotspot” of late 20th century sea‐level rise. Here we test, using salt‐marsh proxy sea‐level records, if this coast experienced enhanced sea‐level rise over earlier multidecadal‐centennial periods. While we find in agreement with previous studies that 20th century rates of sea‐level change were higher compared to rates during preceding centuries, rates of 18th century sea‐level rise were only slightly lower, suggesting that the “hotspot” is a reoccurring feature for at least three centuries. Proxy sea‐level records from North America (Iceland) are negatively (positively) correlated with centennial changes in the North Atlantic Oscillation. They are consistent with sea‐level “fingerprints” of Arctic ice melt, and we therefore hypothesize that sea‐level fluctuations are related to changes in Arctic land‐ice mass. Predictions of future sea‐level rise should take into account these long‐term fluctuating rates of natural sea‐level change.
    Description: This work is funded by the Natural Environment Research Council (grant NE/G003440/1). All radiocarbon dating was supported by the Natural Environment Research Council Radiocarbon Facility (allocations 1490.0810, 1566.0511, 1604.0112). Mark Wood assisted with fieldwork. Rob Scaife analyzed pollen data for core SN‐3.3. Sönke Dangendorf and Kevin Berk acknowledge the University of Siegen for their support within the PEPSEA project. Christopher Piecuch was supported by National Science Foundation awards OCE‐1558966 and OCE‐1834739. We thank project members Miguel Ángel Morales Maqueda, Chris Hughes, Vassil Roussenov and Ric Williams for valuable discussions. We are grateful to the International Space Science Institute (ISSI; Bern, Switzerland) for support of the International Team “Towards a unified Sea Level Record”. Data used in this paper are freely available online (https://www.doi.org/10/dgvq).
    Keywords: Sea level ; Late Holocene ; Common Era ; Climate ; Ocean
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  • 75
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    Late-1980s regime shift in the formation of the North Pacific subtropical mode water (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015700, doi:10.1029/2019JC015700.
    Description: The formation mechanism as well as its temporal change of the North Pacific subtropical mode water (NPSTMW) is investigated using a 50‐year (1960–2009) ocean general circulation model hindcast. The volume budget analysis suggests that the formation of the NPSTMW is mainly controlled by the air‐sea interaction and ocean dynamics, but there is a regime shift of the relative importance between the two around late‐1980s. While the local air‐sea interaction process is a main driver of the NPSTMW formation prior to late‐1980s, ocean dynamics including the vertical entrainment become dominant since then. The NPSTMW formation is affected by the North Pacific Oscillation simultaneously in the early period, but with a few years lag in the later period. The interdecadal change of the driving mechanism of the interannual variability of the NPSTMW is probably due to the stronger (weaker) influence of local atmospheric forcing in the western North Pacific and unfavorable (favorable) wind stress curl condition for the remote oceanic forcing from the central North Pacific during the former (later) period. This regime shift may be related to the change of centers of the actions of the wind stress curl since the late‐1980s.
    Description: The CORE2 data set was obtained from https://data1.gfdl.noaa.gov/nomads/forms/core/COREv2.html. The World Ocean Atlas 2009 and the Polar Hydrographic Climatology data set were obtained from https://www.nodc.noaa.gov/OC5/WOA09/pr_woa09.html and http://psc.apl.washington.edu/nonwp_projects/PHC/Climatology.html, respectively. The OSCAR data were taken from https://podaac.jpl.nasa.gov/dataset/OSCAR_L4_OC_third‐deg. The database of mixed layer depth is downloaded from http://mixedlayer.ucsd.edu. The data set of the Argo floats was taken from http://uskess.whoi.edu/. The sea surface height data observed by the satellite are available from AVISO (http://www.aviso.altimetry.fr/duacs/). The EN4 data set was downloaded from https://www.metoffice.gov.uk/hadobs/en4/. This study was supported by the National Research Foundation of Korea (NRF) Grant NRF‐2009‐C1AAA001‐0093, funded by the Korea government (MEST). The numerical simulation in this paper was supported by the Supercomputing Center of Korea Institute of Science and Technology Information (KISTI), with its supercomputing resources and technical support (KSC‐2018‐CRE‐0117). Y.‐O. Kwon was funded by National Science Foundation (NSF) EaSM2 OCE‐1242989. Y. H. Kim was partly supported by research projects entitled “Investigation and prediction system development of marine heatwave around the Korean Peninsula originated from the subarctic and western Pacific” (20190344) funded by the Ministry of Oceans and Fisheries (MOF). G. Pak was supported by in‐house projects of the Korea Institute of Ocean Science & Technology (PE99711, PE99811).
    Description: 2020-09-07
    Keywords: Ocean general circulation model ; North Pacific subtropical mode water ; Kuroshio Extension ; Volume budget ; Regime shift ; North Pacific Oscillation
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    The summer heat balance of the Oregon inner shelf over two decades: mean and interannual variability (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015856, doi:10.1029/2019JC015856.
    Description: Summer temperature and velocity measurements from 14 years in 15 m of water over the inner shelf off Oregon were used to investigate interannual temperature variability and the capacity of the across‐shelf heat flux to buffer net surface warming. There was no observable trend in summer mean temperatures, and the standard deviation of interannual variability (0.5°C) was less than the standard deviation in daily temperatures each summer (1.6°C, on average). Yet net surface heat flux provided a nearly constant source of heat each year, with a standard deviation less than 15 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0001 of the interannual mean. The summer mean across‐shelf upwelling circulation advected warmer water offshore near the surface, cooling the inner shelf and buffering the surface warming. In most years (11 out of 14), this two‐dimensional heat budget roughly closed with a residual less than 20 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0002 of the leading term. Even in years when the heat budget did not balance, the observed temperature change was negligible, indicating that an additional source of cooling was needed to close the budget. A comparison of the residual to the interannual variability in fields such as along‐shelf wind stress, stratification, and along‐shelf currents found no significant correlation, and further investigation into the intraseasonal dynamics is recommended to explain the results. An improved understanding of the processes that contribute to warming or cooling of the coastal ocean has the potential to improve predictions of the impact of year‐to‐year changes in local winds and circulation, such as from marine heat waves or climate change, on coastal temperatures.
    Description: The authors would like to acknowledge the David and Lucile Packard Foundation and The Gordon and Betty Moore Foundation for their support of the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) mooring program. This paper is PISCO contribution 504. The contributions of A. Kirincich and S. Lentz were supported by National Science Foundation (NSF) Grant OCE‐1558874). E. Lemagie was partially supported by NSF Grant OCE‐1558874 as well as the Woods Hole Oceanographic Institution Postdoctoral Scholars program. Temperature and velocity data were collected and made available by PISCO (www.piscoweb.org). The NDBC and NWPO3 buoy data are freely available from NOAA (www.ndbc.noaa.gov). Surface heat flux reanalyses were download online: ERA5 was accessed through www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5, and NCEP and OAFlux data were downloaded from www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.html and http://oaflux.whoi.edu/, respectively.
    Description: 2020-07-24
    Keywords: Inner shelf ; Heat budget ; Temperature ; PISCO ; Oregon coast ; Upwelling
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    Trends in physical properties at the southern New England shelf break (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(2), (2020): e2019JC015784, doi:10.1029/2019JC015784.
    Description: We analyze 11 years (2003–2013) of repeat temperature and salinity sections from across the New England shelf break south of Cape Cod during early summer (June–July). The mean sections resolved the shelf break front which supports the Shelf Break Jet, a vital component of the regional circulation. Individual sections showed a great deal of variability associated with meanders in the shelf break front consistent with previous studies in the region. Over the 11 year record, the shelf region (inshore of the 100 m isobath) warmed by 0.26 °C yr -1, with the majority of this warming occurring shallower than 20 m (0.58 °C yr -1). The full‐depth trend agrees well with previous studies of shelf warming to the north and the south of our study region. The temperature and salinity of the offshore edge of the Cold Pool Water on the shelf did not change significantly during this period. The surface warming on the shelf resulted in a decrease in near‐surface density of 0.12 kg m -3 yr -1 and an increase in stratification between 10 and 15 m of 6.7 X 10(-5) S -2 yr -1 . Offshore of the shelf break, the Slope Water also warmed and became more saline by 0.21 °C yr -1 and 0.04 yr -1 respectively, resulting in a maximal reduction in density of 0.01 kg m -3 yr -1. In the Shelf Break Front, there is some evidence of freshening and a reduction in density, which may have resulted from an offshore shift in the Cold Pool but the statistical significance is small.
    Description: We wish to thank the Sea Education Association and the Woods Hole Oceanographic Institution for maintaining this collaboration. We also extend our warmest thanks to the numerous chief scientists, crew members, and student participants who collected the data and made this work possible. This work was supported by NSF Grants OCE‐1657853 and OCE‐1851261. G. G. was also supported by a Senior Scientist Chair from the Woods Hole Oceanographic Institution. The Jake Peirson Summer Cruises were supported using funds provided by a WHOI‐MIT Joint Program alumnus and by the WHOI Academic Programs Office. M. I. was supported by The Woods Hole Partnership Education Program, the Sea Education Association, and the Woods Hole Oceanographic Institution for her summer research work. We thank Jacob Forsyth for discussions on the seasonal variability of warming over the New Jersey shelf and warming rates for different time frames. Data used in this paper are available from the WHOI‐MBL Library (https://darchive.mblwhoilibrary.org/handle/1912/25158, doi:10.26025/dz4w‐kk13).
    Keywords: Temperature and salinity trends ; Stratification ; New England ; Shelf Break Jet ; Climate
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    Intense hurricane activity over the past 1500 years at South Andros Island, the Bahamas (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in E. J., Donnelly, J. P., van Hengstum, P. J., Wiman, C., Sullivan, R. M., Winkler, T. S., d'Entremont, N. E., Toomey, M., & Albury, N. Intense hurricane activity over the past 1500 years at South Andros Island, the Bahamas. Paleoceanography and Paleoclimatology, 34(11), (2019): 1761-1783, doi:10.1029/2019PA003665.
    Description: Hurricanes cause substantial loss of life and resources in coastal areas. Unfortunately, historical hurricane records are too short and incomplete to capture hurricane‐climate interactions on multi‐decadal and longer timescales. Coarse‐grained, hurricane‐induced deposits preserved in blue holes in the Caribbean can provide records of past hurricane activity extending back thousands of years. Here we present a high resolution record of intense hurricane events over the past 1500 years from a blue hole on South Andros Island on the Great Bahama Bank. This record is corroborated by shorter reconstructions from cores collected at two nearby blue holes. The record contains coarse‐grained event deposits attributable to known historical hurricane strikes within age uncertainties. Over the past 1500 years, South Andros shows evidence of four active periods of hurricane activity. None of these active intervals occurred in the past 163 years. We suggest that Intertropical Convergence Zone position modulates hurricane activity on the island based on a correlation with Cariaco Basin titanium concentrations. An anomalous gap in activity on South Andros Island in the early 13th century corresponds to a period of increased volcanism. The patterns of hurricane activity reconstructed from South Andros Island closely match those from the northeastern Gulf of Mexico but are anti‐phased with records from New England. We suggest that either changes in local environmental conditions (e.g., SSTs) or a northeastward shift in storm tracks can account for the increased activity in the western North Atlantic when the Gulf of Mexico and southeastern Caribbean are less active.
    Description: This work was funded by the National Science Foundation Graduate Research Fellowship (to E.J.W.), National Science Foundation grant OCE‐1356708 (to J.P.D. and P.J.vH.), the Dalio Explore Foundation and the USGS Land Change Science Program (M.R.T.). We are grateful to members of WHOI Coastal Systems Group, in particular Stephanie Madsen, for their help in the processing core samples. We thank two anonymous reviewers, Matthew Lachniet, Marci Robinson (USGS) and Miriam Jones (USGS) for their helpful feedback on earlier versions of this manuscript. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The data are available on the National Climatic Data Center (http://www.ncdc.noaa.gov/dataaccess/paleoclimatology‐data) and WHOI Coastal Systems Group (https://web.whoi.edu/coastal‐group/) websites.
    Keywords: Paleohurricanes ; Carbonate tidal flats ; Blue holes ; Andros ; Bahamas
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    Characteristics and transformation of Pacific winter water on the Chukchi Sea shelf in late spring (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124 (2019): 7153– 7177, doi: 10.1029/2019JC015261.
    Description: Data from a late spring survey of the northeast Chukchi Sea are used to investigate various aspects of newly ventilated winter water (NVWW). More than 96% of the water sampled on the shelf was NVWW, the saltiest (densest) of which tended to be in the main flow pathways on the shelf. Nearly all of the hydrographic profiles on the shelf displayed a two‐layer structure, with a surface mixed layer and bottom boundary layer separated by a weak density interface (on the order of 0.02 kg/m3). Using a polynya model to drive a one‐dimensional mixing model, it was demonstrated that, on average, the profiles would become completely homogenized within 14–25 hr when subjected to the March and April heat fluxes. A subset of the profiles would become homogenized when subjected to the May heat fluxes. Since the study domain contained numerous leads within the pack ice—many of them refreezing—and since some of the measured profiles were vertically uniform in density, this suggests that NVWW is formed throughout the Chukchi shelf via convection within small openings in the ice. This is consistent with the result that the salinity signals of the NVWW along the central shelf pathway cannot be explained solely by advection from Bering Strait or via modification within large polynyas. The local convection would be expected to stir nutrients into the water column from the sediments, which explains the high nitrate concentrations observed throughout the shelf. This provides a favorable initial condition for phytoplankton growth on the Chukchi shelf.
    Description: The authors are indebted to Commanding Officer John Reeves, Executive Officer Gregory Stanclik, Operations Officer Jacob Cass, and the entire crew of the USCGC Healy for their hard work and dedication in making the SUBICE cruise a success. We also acknowledge Scott Hiller for his assistance with Healy's meteorological data. We thank an anonymous reviewer for helpful input that improved the paper. Funding for A. P., R. P., C. N., and F. B. was provided by the National Science Foundation (NSF) under grant PLR‐1303617. K. M. was funded by the Natural Sciences and Engineering Research Council of Canada. K. V. acknowledges the Bergen Research Foundation under Grant BFS2016REK01. K. A. was supported by the NSF grant PLR‐1304563. The CTD and shipboard ADCP data are available from https://www.rvdata.us/search/cruise/HLY1401, and the nutrient data can be accessed from https://arcticdata.io/catalog/view/doi:10.18739/A2RG3Z and http://ocean.stanford.edu/subice/. The shipboard meteorological data reside at http://ocean.stanford.edu/subice/.
    Description: 2020-04-14
    Keywords: Brine rejection ; Chukchi Sea ; Convection ; Winter water
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  • 80
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    Dynamic accretion beneath a slow-spreading ridge segment: IODP hole 1473A and the Atlantis Bank oceanic core complex (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Solid Earth 124(12), (2019): 12631-12659, doi:10.1029/2018JB016858.
    Description: 809 deep IODP Hole U1473A at Atlantis Bank, SWIR, is 2.2 km from 1,508‐m Hole 735B and 1.4 from 158‐m Hole 1105A. With mapping, it provides the first 3‐D view of the upper levels of a 660‐km2 lower crustal batholith. It is laterally and vertically zoned, representing a complex interplay of cyclic intrusion, and ongoing deformation, with kilometer‐scale upward and lateral migration of interstial melt. Transform wall dives over the gabbro‐peridotite contact found only evolved gabbro intruded directly into the mantle near the transform. There was no high‐level melt lens, rather the gabbros crystallized at depth, and then emplaced into the zone of diking by diapiric rise of a crystal mush followed by crystal‐plastic deformation and faulting. The residues to mass balance the crust to a parent melt composition lie at depth below the center of the massif—likely near the crust‐mantle boundary. Thus, basalts erupted to the seafloor from 〉1,550 mbsf. By contrast, the Mid‐Atlantic Ridge lower crust drilled at 23°N and at Atlantis Massif experienced little high‐temperature deformation and limited late‐stage melt transport. They contain primitive cumulates and represent direct intrusion, storage, and crystallization of parental MORB in thinner crust below the dike‐gabbro transition. The strong asymmetric spreading of the SWIR to the south was due to fault capture, with the northern rift valley wall faults cutoff by a detachment fault that extended across most of the zone of intrusion. This caused rapid migration of the plate boundary to the north, while the large majority of the lower crust to spread south unroofing Atlantis Bank and uplifting it into the rift mountains.
    Description: The first author wishes to also recognize grants OCE1434452 and OCE1637130 from The National Science Foundation (NSF) for synthesis of the Atlantis Bank site survey data and post‐cruise rock analysis and for analysis of Expedition 360 and 362T cores and data. Additional support was also gratefully received from The Investment in Science Fund at WHOI.
    Description: 2020-05-07
    Keywords: Lower ocean crust ; Crustal accretion ; SW Indian Ridge ; Crust‐mantle boundary ; Ocean core complex ; Ocean drilling
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    The mean state and variability of the North Atlantic circulation: a perspective from ocean reanalyses (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124, (2019): 9141-9170, doi: 10.1029/2019JC015210.
    Description: The observational network around the North Atlantic has improved significantly over the last few decades with subsurface profiling floats and satellite observations and the recent efforts to monitor the Atlantic Meridional Overturning Circulation (AMOC). These have shown decadal time scale changes across the North Atlantic including in heat content, heat transport, and the circulation. However, there are still significant gaps in the observational coverage. Ocean reanalyses integrate the observations with a dynamically consistent ocean model and can be used to understand the observed changes. However, the ability of the reanalyses to represent the dynamics must also be assessed. We use an ensemble of global ocean reanalyses to examine the time mean state and interannual‐decadal variability of the North Atlantic ocean since 1993. We assess how well the reanalyses are able to capture processes and whether any understanding can be gained. In particular, we examine aspects of the circulation including convection, AMOC and gyre strengths, and transports. We find that reanalyses show some consistency, in particular showing a weakening of the subpolar gyre and AMOC at 50°N from the mid‐1990s until at least 2009 (related to decadal variability in previous studies), a strengthening and then weakening of the AMOC at 26.5°N since 2000, and impacts of circulation changes on transports. These results agree with model studies and the AMOC observations at 26.5°N since 2005. We also see less spread across the ensemble in AMOC strength and mixed layer depth, suggesting improvements as the observational coverage has improved.
    Description: This work was initiated through the EU COST‐EOS‐1402 project which supported the development of this paper by funding project meetings, both in person and virtual. We would like to thank Aida Azcarate for organizing the funding for the meetings and would like to thank Martha Buckley, Gokhan Danabasoglu, and Simon Josey for useful discussions. Jackson, Storto and Zuo were partially funded, by the Copernicus Marine Environment Monitoring Service (CMEMS: 23‐GLO‐RAN) and Zuo was partially funded by the Copernicus Climate Change Service. Jackson was also partially funded by the joint UK BEIS/Defra Met Office Hadley Centre Climate Programme (GA01101). Haines and Robson acknowledge funding under the NERC RAPID projects RAMOC and DYNAMOC (NE/M005127/1) respectively, and Robson also acknowledges funding from the ACSIS project. Mignac was supported for PhD scholarship by the CAPES Foundation, Ministry of Education of Brazil (Proc. BEX 1386/15‐8). Forget acknowledges support from the Simons Foundation (549931) and the NASA IDS program (6937342). Work by Piecuch was carried out under the ECCO project, funded by the NASA Physical Oceanography, Cryospheric Science, and Modeling, Analysis and Prediction programs, and supported by the Independent Research and Development Program at Woods Hole Oceanographic Institution. Wilson was funded by the NERC UK‐OSNAP project (NE/K010875.1) as part of the international OSNAP program. NorCPM‐v1 reanalysis was cofunded by the Center for Climate Dynamics at the Bjerknes Center, the Norwegian Research Council under the EPOCASA (229774/E10) and SFE (270733) research projects, the NordForsk under the Nordic Centre of Excellence (ARCPATH, 76654), and the Trond Mohn Foundation under the project BFS2018TMT01. NorCPM‐v1 reanalysis received a grant for computer time from the Norwegian Program for supercomputer (NOTUR2, project NN9039K) and a storage grant (NORSTORE, NS9039K). Data for the figures are available to download (from https://doi.org/10.5281/zenodo.2598509). Data from some reanalysis products are available to download (from http://marine.copernicus.eu/services-portfolio/access-to-products/) under product names GLOBAL_REANALYSIS_PHY_001_025 (GLORYS2v4), GLOBAL_REANALYSIS_PHY_001_026 (C‐GLORSv7, GLORYS2v4, GloSea5 and ORAS5) and GLOBAL_REANALYSIS_PHY_001_030 (GLORYS12V1).
    Description: 2020-05-06
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 82
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    A complexidade do habitat e a variação individual na dieta e na morfologia de uma espécie de peixe associada à macrófitas. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-07-01
    Description: Generalist species can be composed of specialist individuals, who use a small part of the population's niche. This process is known as individual specialization and can involve changes in diet and morphology. In this study, we hypothesized that individual variations in the diet and morphology of fish associated with macrophytes are related to the habitat’s complexity and greater levels of individual specialization will be found in the intermediate levels of macrophyte biomass. Fish and macrophytes were sampled in 30 multispecific macrophytes stands with different biomasses in a 13.7 km stretch of the rio Baía (Paraná River floodplain). Habitat complexity was assessed using the biomass of aquatic macrophytes (five stands with low biomass, five with intermediate biomass and five with high biomass were selected) and the fish species used in this study was Moenkhausia forestii. The individuals' diet was evaluated using the volumetric method, and the morphology through 18 linear measurements and six area measurements. To assess individual specialization in the diet, the Specialization Index (IS) and the NODF nesting index were used. Individual morphological specialization was assessed using ecomorphological diversity for each level of macrophyte biomass. Correlations between diet and morphology were assessed using the Mantel test. IS and NODF values indicated greater individual specialization in the diet in macrophytes stands with low biomass. The greatest individual morphological specialization was found in macrophytes stands with intermediate biomasses. The Mantel test showed that there was no significant correlation between diet and morphology. The individual specialization of M. forestii diet is related to the increase in competition, mainly intraspecific, intensified by the low availability of resources in low biomass stands. Morphological specialization, in turn, is related to greater availability and accessibility to resources within the intermediate biomass stands, where there are ideal conditions for increasing richness and abundance of resources and little structural complexity when compared to high biomass stands.
    Description: Espécies generalistas podem ser compostas por indivíduos especialistas, que utilizam uma pequena parte do nicho da população. Este processo é conhecido como especialização individual e pode envolver mudanças na dieta e na morfologia. Investigou-se a hipótese de que variações individuais na dieta e na morfologia de peixes associados à macrófitas estão relacionadas à complexidade do habitat e que maiores níveis de especialização individual serão encontrados nos níveis intermediários de biomassa de macrófitas. Foram amostrados peixes e macrófitas em 30 bancos multiespecíficos de macrófitas com diferentes biomassas em um trecho de 13,7 km de extensão do rio Baía (planície de inundação do rio Paraná). A complexidade do habitat foi medida por meio da biomassa das macrófitas aquáticas (selecionou-se cinco bancos com biomassas baixas, cinco com biomassas intermediárias e cinco com biomassas altas) e a espécie de peixe utilizada foi Moenkhausia forestii. Analisou-se a dieta dos indivíduos mediante o método volumétrico e a morfologia mediante 18 medidas lineares e seis medidas de área. Para avaliar a especialização individual na dieta utilizou-se o Índice de Especialização (IS) e o Índice NODF de aninhamento. A especialização individual morfológica foi avaliada por intermédio da diversidade ecomorfológica para cada nível de biomassa de macrófitas. As correlações entre a dieta e a morfologia foram avaliadas por meio de um teste de Mantel. Os valores de IS e NODF indicaram maior especialização individual na dieta em bancos de macrófitas com baixas biomassas. A maior especialização morfológica individual foi verificada em bancos de macrófitas com biomassas intermediárias. O teste de Mantel mostrou que não houve correlação significativa entre a dieta e a morfologia. A especialização individual da dieta de M. forestii está relacionada com o aumento da competição, principalmente intraespecífica, intensificada pela baixa disponibilidade de recursos nos bancos de baixas biomassas. A especialização morfológica por sua vez está relacionada com a maior disponibilidade e acessibilidade aos recursos dentro dos bancos de biomassas intermediárias, onde existem condições ideais para o aumento da riqueza e abundância de recursos e pouca complexidade estrutural quando comparado aos bancos de biomassa alta.
    Description: Masters
    Keywords: Populações, Ecologia de ; Ecologia trófica ; Macrófitas aquáticas ; Especialização individual ; Indivíduos da mesma espécie ; Complexidade estrutural ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::A::Aquatic plants ; ASFA_2015::M::Macrophytes ; ASFA_2015::P::Population dynamics ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Population structure ; ASFA_2015::T::Trophic levels
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 38pp.
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  • 83
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    Sensoriamento remoto orbital para o estudo das interações ambiente-ictiofauna em um reservatório Neotropical. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-05
    Description: The differential distribution of productivity in reservoirs has consequences for the fish assemblage, influencing spatially in its distribution, along a longitudinal gradient. Following the hypothesis that the spatiotemporal dynamics of chlorophyll a and turbidity influence the distribution of the fish assemblage in the Sobradinho reservoir, BA, three predictions were tested: i) Whether the spatiotemporal variations of these variables, determined by digital processing of remote sensing images, follow the spatial zoning pattern described in the literature, for large reservoirs; ii) Whether with the increase in distance, in kilometers, from the collection points to the dam, there is an increase in the total abundance of fish; and iii) If, with the increase in productivity, represented by higher concentrations of chlorophyll a and turbidity, there is an increase in the abundance of fish (total or by trophic guild). The sampling was distributed in five periods, between April 2008 and July 2009, with at least one collection being carried out in each zone of the reservoir, fluvial, transition and lake, in each period. Bands 2 and 3 of scenes from the Landsat-5 satellite were selected, in which the chosen limnological variables show their peak of reflection. With the values of the collections in situ and the reflectance of the scenes, an interpolation was performed and, later, thematic maps of each of the variables were elaborated. The chlorophyll a and turbidity values of the ichthyofauna collection points were extracted from the interpolations. To analyze the existence of the longitudinal gradient, Spearman correlation analyses were performed between the value of the limnological variables and the distance from the collection point to the dam, obtained by extracting a longitudinal profile of the reservoir. To search for associations between limnological variables and ichthyofauna, Spearman's correlation analyses were performed with the value of the variables and total abundance and by trophic guilds. Also, the analyses were carried out dividing the collection points according to the reservoir area and the rainfall regime (dry and full). The Sobradinho reservoir showed a pattern of productivity zoning consistent with the typical pattern of large reservoirs. This zoning had a strong association with the distribution of fish abundance in the Sobradinho reservoir. There was an association between the abundance of fish in the lake area and the seasonal increase in productivity, with a remarkable decrease in abundance during the dry months and an increase in abundance during the floods. However, in the river zone, excess turbidity acted as a limiting factor. High values of this variable, also showing a greater flow of water, may have favored the dispersion of organisms to places of lesser environmental stress, reducing the abundance of fish in this region during floods. However, in general, the fluvial zone showed the highest abundances, exhibiting the well-known fluvial〉 transition〉 lacustrine pattern. The presence of favorable characteristics in the river zone, such as seasonal flooding and greater environmental heterogeneity, may have contributed to this result.
    Description: A distribuição diferencial da produtividade em reservatórios apresenta consequências sobre a assembleia de peixes, influenciando espacialmente na sua distribuição, ao longo de um gradiente longitudinal. Seguindo a hipótese de que as dinâmicas espaço-temporais de clorofila a e turbidez têm influência na distribuição da assembleia de peixes no reservatório de Sobradinho, BA, foram testadas três predições: i) Se as variações espaço-temporais destas variáveis, determinadas por processamento digital de imagens de sensoriamento remoto, seguem o padrão espacial de zonação descrito na literatura, para grandes reservatórios; ii) Se com o aumento da distância, em quilômetros, dos pontos de coleta em relação à barragem há incremento na abundância total de peixes; e iii) Se com o aumento da produtividade, representada por maiores concentrações de clorofila a e turbidez, há incremento na abundância de peixes (total ou por guilda trófica). A amostragem foi distribuída em cinco períodos, entre abril de 2008 e julho de 2009, sendo realizada pelo menos uma coleta em cada zona do reservatório, fluvial, transição e lacustre, em cada período. Selecionou-se as bandas 2 e 3 de cenas do satélite Landsat-5, nas quais as variáveis limnológicas escolhidas apresentam seu pico de reflexão. Com os valores das coletas in situ e a reflectância das cenas foi realizada uma interpolação e, posteriormente elaborou-se mapas temáticos de cada uma das variáveis. Os valores de clorofila a e turbidez dos pontos de coleta da ictiofauna foram extraídos das interpolações. Para analisar a existência do gradiente longitudinal, realizou-se análises de correlação de Spearman entre o valor das variáveis limnológicas e a distância do ponto de coleta em relação à barragem, obtidos através da extração de um perfil longitudinal do reservatório. Para buscar associações entre as variáveis limnológicas e a ictiofauna realizou-se análises de correlação de Spearman com o valor das variáveis e abundância total e por guilda trófica. Também, efetuou-se as análises dividindo os pontos de coleta de acordo com a zona do reservatório e com o regime pluviométrico (seca e cheia). O reservatório de Sobradinho apresentou um padrão de zonação de produtividade condizente com o padrão típico de grandes reservatórios. Esta zonação teve forte associação com a distribuição da abundância de peixes no reservatório de Sobradinho. Foi evidenciada uma associação entre a abundância de peixes da zona lacustre e o incremento sazonal da produtividade, sendo notável a diminuição da abundância durante os meses secos e o incremento desta durante as cheias. No entanto, na zona fluvial, o excesso de turbidez agiu como um fator limitante. Valores altos dessa variável, evidenciando também maior fluxo d’água, podem ter favorecido a dispersão dos organismos para locais de menor stress ambiental, diminuindo a abundância de peixes nesta região durante as cheias. Entretanto, em geral, a zona fluvial apresentou as maiores abundâncias, exibindo o conhecido padrão fluvial 〉 transição 〉 lacustre. A presença de características favoráveis na zona fluvial, como inundação sazonal e maior heterogeneidade ambiental, podem ter contribuido para esse resultado.
    Description: Masters
    Keywords: Ictiofauna de água doce ; Sensoriamento remoto orbital (SR) ; Reservatórios ; Variáveis limnológicas ; Gradiente longitudinal ; ASFA_2015::I::Ichthyofauna ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::V::Variability ; ASFA_2015::L::Limnology ; ASFA_2015::R::Remote sensing
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 45pp.
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  • 84
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    Abordagem multimétrica na avaliação da integridade ecológica : fundamentos conceituais e aplicações. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-05
    Description: The use of multimetric indices (MMIs) to assess ecological conditions in aquatic environments has been applied globally. These indices are practical tools that incorporate various biotic metrics at different levels of biological organization. However, criticism has been directed to the use of MMIs, especially regarding the methodological criteria applied in the process such as related to metric selection and scoring and identification of reference conditions that consider all sources of ecological integrity disturbance. A review of the scientific literature was carried out to evaluate processes of creation and validation of MMIs worldwide. The criteria used by scientists to identify reference conditions, metric selection and scoring, the main metrics globally used in MMIs, and the challenges in applying these indices were verified. It was identified whether nonnative species have been considered as a source of degradation of ecological integrity in the MMIs application. The results indicated that there are no common criteria for determining reference conditions, for metric selection and scoring, which makes it difficult to compare different programs and regions, and to develop or improve future MMIs. The results showed that metrics related to species richness were most frequently used in MMIs applied worldwide, thus, it represents a consistent response pattern in the assessment of ecological conditions. The results also indicate that differentiating natural variability from anthropogenic impacts was evidenced as the major challenge in the MMIs creation and application. The review of the scientific literature indicated that biological invasions are neglected in ecological integrity assessments, as nonnative species are rarely considered as a disturbing factor in identifying reference conditions and species origin metrics are not widely used in MMIs. The results presented in this review may promote the advancement and improvement of MMIs as bioassessment tools.
    Description: O uso de índices multimétricos (MMIs) para avaliação das condições ecológicas em ambientes aquáticos tem sido aplicado globalmente. Estes índices são ferramentas práticas que incorporam várias métricas bióticas em diferentes níveis de organização biológica. No entanto, críticas têm sido endereçadas ao uso de MMIs, especialmente em relação aos critérios metodológicos empregados no processo, como a seleção e pontuação de métricas e identificação de condições de referência que considerem todas as fontes de perturbação da integridade ecológica. Efetuou-se uma revisão de literatura científica a fim de avaliar processos de criação e validação de MMIs em todo o mundo. Verificou-se os critérios usados pelos cientistas para identificação de condições de referência, seleção e pontuação de métricas, as principais métricas usadas globalmente nos MMIs e os desafios na aplicação desses índices. Foi verificado se espécies não nativas têm sido consideradas como fonte de degradação da integridade ecológica na aplicação de MMIs. Os resultados obtidos indicaram que não existem critérios comuns para determinação das condições de referência e seleção e pontuação de métricas, o que dificulta a avaliação comparável entre diferentes programas e regiões e desenvolvimento ou aprimoramento de futuros MMIs. Os resultados mostraram que as métricas de riqueza de espécies foram as mais frequentemente usadas nos MMIs aplicados em todo o mundo, representando, assim, um padrão de resposta consistente na avaliação das condições ecológicas. Os resultados obtidos também sugerem que diferenciar a variabilidade natural dos impactos antropogênicos foi evidenciado como o maior desafio na criação e aplicação de MMIs. A revisão da literatura científica indicou que invasões biológicas são negligenciadas em avaliações de integridade ecológica, pois espécies não nativas são raramente consideradas como fator de perturbação na identificação de condições de referência e métricas de origem das espécies não são amplamente empregadas nos MMIs. Os resultados apresentados nessa revisão podem promover o avanço e aprimoramento dos MMIs como ferramentas de bioavaliação.
    Description: PhD
    Keywords: Ecossistemas de água doce ; Biomonitoramento ; Invasões biológicas ; Indicadores biológicos ; Índice de Integridade Biótica ; Seleção de métricas ; Integridade ecológica ; Indicadores ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::E::Ecosystems ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Indigenous species
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 92pp.
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  • 85
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    Nematoides como indicadores de alterações ambientais em um rio com diferentes níveis de impacto antropogênico. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-02
    Description: Changes in the biodiversity of parasites communities can be used as indicators of the healthy ecosystem as they reflect environmental impacts through their responses to changes in habitat. Thus, the aim of the study was to investigate the potential use of parasites from Geophagus brasiliensis as bioindicators of environmental changes. Three sample points were determined of rio Iguaçu with different degrees of environmental impact. Among 69 specimes analyzed of G. brasiliensis, 32 (46.3%) were parasitized by at least one parasite. A total of 56 specimens of endoparasites belonging to the phylum Nematoda were collected. The abundance of nematode species was significantly higher in fishes collected in point 3 (Kruskal-Wallis2;69 = 8.62; p = 0.01) and species composition between points were significantly different (F = 6.95, p = 0.002). There was no significant difference in relative condition factor (Kn) of G. brasilienses between the points (F2;66 = 2.54; p = 0.08) there was no correlation in Kn and abundance of nematodes (rs = 0.1; p = 0.4). The lower abundance of nematodes was observed in point 1 (critically degraded), due to this environment showing changes in abiotic factors, represented in the relatively high values of conductivity and phosphorus when compared with points 2 and 3 (moderately degraded).The results obtained in the present study indicate that the parasitic community of G. brasiliensis is characterized by low diversity in polluted locations, thus the absence of certain species of parasites and the occurrence of nematode species demonstrated a variation in response to the pollution gradient.
    Description: Alterações na biodiversidade de comunidades parasitárias são utilizadas como indicadoras da saúde de sistemas ecológicos, pois refletem impactos ambientais mediante suas respostas às alterações no habitat. Investigou-se o potencial uso de nematoides de Geophagus brasiliensis como indicadores de alterações ambientais mediante o registro de sua presença e ausência. Foram determinados três pontos amostrais no rio Iguaçu com diferentes graus de impacto ambiental. Entre os 69 espécimes de G. brasiliensis analisados, 32 (46,3%) estavam parasitados por pelo menos um parasita. Um total de 56 espécimes de endoparasitas pertencentes a Nematoda foram coletados. A abundância de espécies de nematoides foi significativamente maior em peixes coletados no ponto 3 (Kruskal-Wallis 2;69 = 8,62; p = 0,01) e a composição das espécies entre os pontos foram significativamente diferentes (F = 6,95, p = 0,002). Não houve diferença significativa no fator de condição relativo (Kn) de G. brasiliensis entre os pontos (F2;66 = 2,54; p = 0,08) e na correlação entre o Kn e a abundância de nematoides (rs = 0,1; p = 0,4). A menor abundância foi verificada no ponto 1 (criticamente degradado), devido a esse ambiente apresentar alterações nos fatores abióticos e na estrutura biológica, quando comparado com os pontos 2 e 3 (moderadamente degradados). Os resultados obtidos indicam que a comunidade parasitária de G. brasiliensis é caracterizada por baixa diversidade em locais poluídos, portanto a ausência de certas espécies de parasitas e a ocorrência de espécies de nematoides demonstraram uma variação em resposta ao gradiente de poluição.
    Description: Masters
    Keywords: Peixes de água doce ; Ictioparasitologia de água doce ; Ecotoxicologia aquática ; Rio impactado ; Parasitas ; Ecotoxicologia ; Bioindicadores ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ecotoxicology ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Impacts
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 26pp.
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    Filogenia de Geophagini (Cichliformes: Cichlidae: Cichlinae) utilizando a anatomia do encéfalo. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-02
    Description: Several studies have presented phylogeny of Geophagini based on morphological and molecular characters; however, neuroanatomical characters have not been explored for the tribe yet. Fish encephalon shows interspecific morphological variation, even in related groups, and can be used to build cladograms. The phylogeny of Geophagini is presented using the neuroanatomical characters mapped on a previous cladogram. This approach showed how the encephalon of Geophagini species have diversified among clades and how ecological features of some species can be related to changes (increase or decrease) of a particular structure. The morphological description of the encephalon of Geophagus sveni was also performed, with an illustration of the major encephalon structures and the origin of the cranial nerves, as well as a comparison of the morphometric differences between males and females.
    Description: Diversos estudos apresentaram a filogenia de Geophagini com base em caracteres morfológicos e moleculares, entretanto, caracteres neuroanatômicos ainda não foram explorados para a tribo. Os cérebros de peixes apresentam variação morfológica interespecífica, mesmo em grupos aparentados, podendo ser utilizados para construção de cladogramas. A filogenia de Geophagini é apresentada com a utilização dos caracteres neuroanatômicos mapeados sobre um cladograma prévio. Esta abordagem evidenciou como o encéfalo de Geophagini se diversificou entre os clados e como características ecológicas de cada espécie podem estar relacionados com modificações (aumento ou diminuição) de uma estrutura em particular. Foi realizada também a descrição morfológica do encéfalo de Geophagus sveni, com ilustração das principais estruturas do encéfalo e origem dos nervos cranianos, assim como a comparação das diferenças morfométricas entre machos e fêmeas.
    Description: Masters
    Keywords: Geophagini (Cichliformes: Cichlidae: Cichlinae) ; Filogenia ; Encéfalo ; Morfologia ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::B::Brain ; ASFA_2015::A::Anatomical structures ; ASFA_2015::T::Taxonomy
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 137pp.
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    Drivers of spatio-temporal dissimilarity in community composition: temporal changes in land use and environmental heterogeneity. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-02
    Description: Biodiversity encompasses multiple aspects or facets changing in space and time. Before a loss of biodiversity in response to anthropogenic impacts it is of the utmost importance to determine what facets of biodiversity are altered and the determinants of such changes. By using information from species abundance, their evolutionary relatedness, and ecological traits we determine how the dissimilarity in composition of fish communities is influenced by temporal changes in land use and changes in environmental heterogeneity across space. In the first approach, we can see that changes in land use over time affected mainly the substitution of evolutionary lineages and functional traits. In the second approach, we find evidence of taxonomic and functional homogenization over time, likely following a decrease in diversity of traits related to habitat use. Furthermore, we found that ecological traits contributed differently to the changes in functional composition as well in their response to environmental heterogeneity. These results support recently evidence showing that anthropogenic impacts are driving changes in biological communities through a taxonomic and functional homogenization.
    Description: A biodiversidade está constituída por múltiplos aspectos ou facetas que mudam no espaço e tempo. Ante um cenário de perda de diversidade em resposta a impactos antropogênicos é urgente determinar quais aspectos da biodiversidade estão sendo alterados e os determinantes de tais mudanças. Usando informação de abundância de espécies, suas relações evolutivas e características ecológicas, determinamos como dissimilaridade da composição entre comunidades de peixes é influenciada por mudanças no uso da terra ao longo do tempo e mudanças da heterogeneidade ambiental no espaço. Na primeira abordagem, podemos ver que ao longo do tempo as mudanças no uso da terra afetam principalmente a substituição de linhagens evolutivas e características ecológicas. Na segunda abordagem, encontramos evidência de que as comunidades estão sendo homogeneizadas taxonômica e funcionalmente ao longo do tempo, provavelmente devido à perda de diversidade em características relacionadas ao uso de habitat. Ademais, encontramos que as características ecológicas contribuem de forma diferente para as mudanças na composição funcional e apresentam diferenças na resposta à heterogeneidade ambiental. Esses resultados suportam evidências de que impactos antropogênicos estão levando a mudanças nas comunidades biológicas, as quais estão tendendo a perder diversidade mediante homogeneização taxonômica e funcional
    Description: PhD
    Keywords: Peixes de água doce ; Comunidades, Ecologia de ; Impactos ambientais antropogênicos ; Mudanças espaciais e temporais ; Diversidades funcional e filogenética ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::L::Land use ; ASFA_2015::P::Phylogenetics ; ASFA_2015::F::Functional analysis ; ASFA_2015::E::Ecological diversity ; ASFA_2015::T::Temporal variations ; ASFA_2015::T::Taxonomy ; ASFA_2015::E::Environmental impact
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 88
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    Variáveis relacionadas com a distribuição regional, dominância e estruturação de comunidades de peixes em riachos. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-02
    Description: Different ecological processes (e.g., rescue effect, environmental filtering, limiting similarity and dispersal) shape the structure of ecological communities. These processes, which are related to the theories of metapopulation and metacommunities, guided this study. For this purpose, data from fish communities in streams in the Upper Araguaia river basin (Mato Grosso and the Goiás States, Brazil) were used. It was observed that the regional distribution of fish species was modelled according to niche attributes (position and breadth), body size, trophic position, and swimming capacity. The results indicated that average abundance, niche position and niche amplitude predict the regional distribution of the species. Taken together, these results suggest the importance of metapopulation dynamics and niche-based processes explaining the regional distribution of species in the studied system. At another time, it was tested whether the abundance of subordinate species (i.e., any species that are not dominant in a local community) was correlated with the functional distance between dominant and subordinate species. In the results, a negative relationship between these quantities and that the subordinate species had larger body sizes compared to the dominant species in the local communities. These results also suggest that species filtering is more important than the interspecific competition to explain the patterns of species abundance distribution. In this study, was analyzed the relative importance of local environmental, landscape and spatial variables in structuring fish communities in streams of “veredas” (small wetlands in the Cerrado). The local environmental variables, after controlling the effect of space, were clearly more important than those obtained at the landscape scale. In view of the observations, it is concluded that the use of landscape data, in studies seeking environmental correlates of local community structure, should not occur at the expense of obtaining local variables (mainly those related to the habitat structure). The results of the three investigations in this study shown the predominant role of local environmental filters in the structuring of the fish communities analyzed. Species with high niche amplitude tend to have wide regional distributions and small-bodied ones tend to be locally dominant.
    Description: Diversos processos ecológicos, tais como efeito resgate, filtragem ambiental, similaridade limitante e dispersão atuam na estruturação das comunidades. Esses processos, relacionados às teorias de metapopulação e metacomunidades, direcionaram este estudo. Para tanto, dados de comunidades de peixes em riachos do Alto da bacia do rio Araguaia (estados do Mato Grosso e Goiás, Brasil) foram utilizados. Foi observado que a distribuição regional das espécies de peixes em função de atributos do nicho (posição e amplitude), tamanho do corpo, posição trófica e capacidade natatória. Observou-se que apenas a abundância média, a posição de nicho e a amplitude de nicho predizem a distribuição regional das espécies. Em conjunto, esses resultados indicam a importância da dinâmica metapopulacional e de processos baseados no nicho para explicar a distribuição regional das espécies de peixes de riachos do Cerrado. Em outro momento, foi testado se a abundância de espécies subordinadas (i.e., quaisquer espécies que não são dominantes numa comunidade local) estava correlacionada com a distância funcional entre espécies dominantes e subordinadas. Nos resultados, encontrou-se uma relação negativa entre essas quantidades e que as espécies subordinadas apresentavam maiores tamanhos corpóreos em comparação com as espécies dominantes nas comunidades locais. Esses resultados mostram que a filtragem de espécies é mais importante que a competição interespecífica para explicar a distribuição da abundância entre as espécies. Neste estudo, foi analisada a importância relativa de variáveis ambientais locais, da paisagem e espaciais na estruturação de comunidades de peixes de riachos de veredas (pequenas áreas úmidas do Cerrado). As variáveis ambientais locais, após controlar o efeito do espaço, foram claramente mais importantes que aquelas obtidas na escala da paisagem. Diante das observações, conclui-se que a obtenção de dados de paisagem, em estudos que buscam variáveis ambientais relacionadas com a estruturação de comunidades locais, não deve ocorrer em detrimento da obtenção de variáveis locais (principalmente aquelas relacionadas com a estruturação dos habitats). Os resultados das três investigações deste estudo mostram o papel preponderante de filtros ambientais locais na estruturação das comunidades de peixes em riachos do Cerrado. Espécies de peixes com maiores amplitudes de nicho tendem a apresentar maiores distribuições regionais e espécies com menores tamanhos corpóreos tendem a ser localmente dominantes.
    Description: PhD
    Keywords: Peixes de riachos de cerrado ; Ecologia funcional ; Peixes de riachos de água doce ; Comunidades, Ecologia de ; Escala espaço-temporal ; Diversidade funcional ; Variáveis ambientais ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Stream ecology ; ASFA_2015::F::Functional analysis ; ASFA_2015::N::Niches ; ASFA_2015::D::Dispersion ; ASFA_2015::A::Abundance ; ASFA_2015::F::Filters
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 105pp.
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  • 89
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    A diversidade de macrófitas altera a comunidade de invertebrados e a dieta de peixes. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-09-07
    Description: The diversity of aquatic macrophytes provides different local conditions, containing more microhabitat than homogeneous systems, thus supporting diverse biotic communities. Considering that the diversity of these plants can affect the invertebrate community and, consequently, the associated fish diet, this study assessed the influence of macrophyte diversity on the abundance, richness, and diversity of invertebrates, and the diet of Moenkhausia forestii. Fish, invertebrates, and macrophytes were sampled in macrophyte stands with different diversities, distributed along with a 14 km extension of the coastal region of Rio Baía (Upper Paraná River floodplain). The stands were separated into low, medium and high diversity, and they all had biomass that did not differ significantly. The invertebrates associated with the macrophytes and those consumed by M. forestii were identified and counted. Differences in abundance, richness, and diversity of invertebrates between levels of macrophyte diversity (low, medium and high) were tested using an ANOVA. Differences in the composition of the M. forestii diet were tested using a PERMANOVA, and feeding selectivity was calculated using the Ivlev index. Richness, diversity, and abundance of invertebrates were greater in high diversity macrophyte stands, however, for abundance, there was no significant difference between the levels of macrophyte diversity. The diet of M. forestii differed significantly between stands, and aquatic plants were the most used resource in low diversity. Invertebrates were dominant in high diversity, while aquatic plants and invertebrates were important in medium diversity of macrophytes. These results indicate that invertebrate communities were influenced by the diversity of macrophytes since richer and more diverse communities were also associated with more diverse stands of these plants. Changes observed in the diet of M. forestii were also associated with the diversity of macrophytes. In a scenario where involving changes in the attributes of these plants, and these stands become dominated by one or a few species of macrophytes, it is expected that this will reflect on other trophic levels, even at a local scale.
    Description: A diversidade de macrófitas aquáticas proporciona condições locais distintas, de modo a conter mais micro-habitat do que sistemas homogêneos, sustentando assim comunidades associadas diversas. Considerando que a diversidade destas plantas pode influenciar a comunidade de invertebrados e, consequentemente, a dieta de peixes associados, este estudo avaliou a influência da diversidade de macrófitas sobre a abundância, riqueza e diversidade de invertebrados, e sobre a dieta de Moenkhausia forestii. Peixes, invertebrados e macrófitas foram amostrados em bancos de macrófitas com diferentes diversidades, distribuídos ao longo de 14 km de extensão da região litorânea do rio Baía (planície de inundação do alto rio Paraná). Os bancos de macrófitas foram categorizados em diversidade baixa, média e alta, e todos apresentaram biomassa que não diferiram significativamente. Os invertebrados associados à macrófitas e os consumidos por M. forestii foram identificados e contados. Diferenças na abundância, riqueza e diversidade de invertebrados entre os níveis de diversidade de macrófitas (baixa, média e alta) foram testadas por uma ANOVA. Diferenças na composição da dieta de M. forestii entre os níveis de diversidade foram avaliadas por uma PERMANOVA. A riqueza, a diversidade e a abundância de invertebrados foram maiores em bancos de macrófitas com maior diversidade, porém para a abundância não houve diferença significativa entre os níveis de diversidade de macrófitas. A dieta de M. forestii diferiu significativamente entre os bancos, sendo que vegetal foi o recurso mais utilizado em baixa diversidade de macrófitas, invertebrado foi dominante em alta diversidade e vegetal e invertebrado foram importantes em média diversidade de macrófitas. Estes resultados indicam que as comunidades de invertebrados foram influenciadas pela diversidade de macrófitas, visto que comunidades mais ricas e diversas estiveram também associadas a bancos mais diversos destas plantas. As alterações constatadas na dieta de M. forestii também estiveram associadas à diversidade de macrófitas. A espécie passou de uma dieta onívora, em bancos de baixa diversidade, para uma dieta invertívora em bancos com alta diversidade de macrófitas. Assim, em um cenário onde haja mudanças nos atributos dessas plantas, e esses bancos passem a ser dominados por uma ou poucas espécies de macrófitas, é esperado que isso se reflita para os outros níveis tróficos, ainda que em uma escala local.
    Description: Masters
    Keywords: Macrófitas aquáticas ; Comunidades, Ecologia de ; Ecologia trófica ; Diversidade ; Peixes ; Alimentação ; Nicho ; Amplitude ; ASFA_2015::M::Macrophytes ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::E::Ecological diversity ; ASFA_2015::E::Ecology ; ASFA_2015::T::Trophic levels ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Invertebrate zoology
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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    A diversidade funcional da assembleia de peixes em uma planície de inundação Neotropical: variações com eventos de El Niño Oscilação Sul (ENSO). (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-07-04
    Description: El Niño Southern Oscillation (ENSO) is a natural phenomenon that generates El Niño and La Niña events worldwide. Among the consequences caused by this climatic fluctuation, there are changes in the rainfall regime, which can trigger in times of extreme drought or extreme flood in freshwater environments, such as floodplains. The floodplain flood phases cause homogenization between the different environments, which also cause the homogenization of the fish assemblage in these floodplains. Among the rivers affected by ENSO is the Rio Paraná and the floodplain associated with its upper stretch, the upper Rio Paraná floodplain (UPRF). We aimed to study if El Niño phenomena change the functional diversity of fish in the floodplain between different environments, lakes and rivers. The results answered the hypotheses that: 1. El Niño events intensify floods in UPRF and, consequently, promote a functional homogenization of the fish assemblage; 2. Different functional guilds will be favored in times of El Niño or La Niña. The measurement of ENSO was obtained by the Oceanic Niño Index (ONI), while the hydrometric level of the upper Rio Paraná was obtained by daily measurement on a hydrometric ruler. The fish were collected with gillnets in different environments of the floodplain, lakes and rivers, being grouped in reproductive and trophic guilds, used to calculate indices of functional diversity. It was tested how ONI affects the hydrometric level of the upper Rio Paraná (Pearson's correlation); how ENSO affects the functional composition of floodplain fish (PCoA; PERMANOVA), as well as the effect of homogenization; which functional guilds are favored in El Niño or La Niña events and whether there is an additive effect of ONI and hydrometric level on the functional composition of the floodplain fish. The hydrometric level presented a positive correlation with ONI, indicating that El Niño events cause flooding in the upper Paraná River, while La Niña drought. The effect of El Niño's functional homogenization on fish was more visible in lakes, with rivers being less affected by ENSO, and floods were not intense enough to homogenize these two types of environment, this may be the same for other floodplains where ENSO acts in the same way. Fish with parental care and invertivores were favored in El Niño events, while herbivorous and piscivorous fish were favored in La Niña events. Migratory fish appears to respond one year after these climatic events, as they have a long-life cycle. The additive effect of ENSO and hydrometric level on the functional composition wasn’t found, because other regional and local factors can influence this interaction. However, even with these factors, the fish assemblage from the floodplain still responds to these climatic fluctuations, being more homogeneous in El Niño events than in La Niña events.
    Description: El Niño Oscilação Sul (El Niño Southern Oscillation – ENSO) é um fenômeno natural que gera eventos de El Niño e La Niña no mundo todo. Dentre as consequências causadas por essa oscilação climática, existem alterações no regime pluviométrico, que podem desencadear em épocas de extrema seca ou extrema cheia em ambientes de água doce, como as planícies de inundação. As fases de cheia de planícies de inundação causam uma homogeneização entre os diferentes ambientes, o que também causa a homogeneização da assembleia de peixes dessas planícies. Dentre os rios afetados por ENSO encontra-se o rio Paraná e a planície de inundação associada ao seu trecho superior, a planície de inundação do alto rio Paraná (PIARP). Estudou-se o fenômeno de El Niño e por meio da amostragem constatou-se mudanças na diversidade funcional dos peixes da planície de inundação entre diferentes ambientes, lagoas e rios. Os resultados responderam as hipóteses de que: 1. Eventos de El Niño intensifiquem cheias na PIARP e, consequentemente, provoquem uma homogeneização funcional da assembleia de peixes; 2. Diferentes guildas funcionais serão favorecidas em épocas de El Niño ou La Niña. Obteve-se a mensuração de ENSO pelo índice de ONI (Oceanic Niño Index), enquanto que o nível hidrométrico do alto rio Paraná foi obtido pela medição diária em uma régua hidrométrica. Os peixes foram coletados com redes de espera em diferentes ambientes da planície de inundação, lagoas e rios, sendo agrupados em guildas reprodutivas e alimentares, usados para calcular índices de diversidade funcional. Testou-se como o ONI afeta o nível hidrométrico do alto rio Paraná (correlação de Pearson); como o ENSO afeta a composição funcional dos peixes da planície de inundação (PCoA; PERMANOVA), bem como o efeito da homogeneização; quais guildas funcionais são favorecidas em eventos de El Niño ou La Niña e se há efeito aditivo de ONI e nível hidrométrico sobre a composição funcional dos peixes da planície. O nível hidrométrico apresentou correlação positiva com ONI, indicando que eventos de El Niño causam cheias no alto rio Paraná, enquanto La Niña, seca. O efeito da homogeneização funcional de El Niño sobre os peixes foi mais visível em lagoas, sendo que os rios foram menos afetados por ENSO, e as cheias não foram intensas o suficiente para homogeneizarem esses dois tipos de ambiente, podendo ser o mesmo para demais planícies de inundação onde ENSO age da mesma maneira. Peixes com cuidado parental e invertívoros foram favorecidos em épocas de El Niño, enquanto que, peixes herbívoros e piscívoros foram favorecidos em épocas de La Niña. Os peixes migradores aparentam responder um ano após esses eventos climáticos, por possuírem ciclo de vida longo. O efeito aditivo de ONI e nível hidrométrico sobre a composição funcional não foi encontrado, sendo que outros fatores regionais e locais podem influenciar nessa interação. Entretanto, mesmo com esses fatores a assembleia de peixes da planície de inundação ainda responde à essas oscilações climáticas, sendo mais homogênea em eventos de El Niño do que em eventos de La Niña.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Oscilação Sul (ENSO) ; Diversidade e índices funcionais ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::D::Diversity index ; ASFA_2015::I::Impacts ; ASFA_2015::C::Climatic changes ; ASFA_2015::E::El Nino phenomena
    Repository Name: AquaDocs
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    Efeitos do El Niño Southern Oscillation (ENSO) nas assembleias de peixes de uma planície de inundação Neotropical. (2020)
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Details
    Publication Date: 2022-07-04
    Description: We evaluated the effects of El Niño Southern Oscillation in the fish assemblages of the upper Paraná River floodplain. Specifically, we tested if: (i) reservoirs regulate ENSO effects on the hydrometric level in the rivers that compose the plain (Rio Paraná – intensely dammed and Rio Ivinhema – not dammed); (ii) ENSO events influence the structure of the fish assemblages of the study rivers; and that (iii) the hydrometric level and the ENSO events will act synergistically on the structure of the fish assemblage of the Rio Paraná and Rio Ivinhema. ENSO data was gathered at the National Oceanic and Atmospheric Administration (NOAA), using as proxy the “Oceanic Niño Index” (ONI). Water level data were gathered from the hydrological stations located in the sampled area. Fish samplings were carried out quarterly between the years 2000 and 2018. In general, ENSO events were correlated with the hydrometric level of the Rio Paraná and Rio Ivinhema, but with lower correlation for the Rio Paraná, probably due to the effects of dams upstream the plain. The fish assemblages of the Rio Paraná and Rio Ivinhema presented distinct structures, and the ENSO events appeared to influence this differentiation. Migratory species were negatively correlated with ONI, but the greatest abundances were found one year after the events of El Niño ("Lag" of one year). Higher values of the attributes of the fish assemblages were recorded for the Rio Ivinhema, in all events of ENSO (La Niña, Neutral and El Niño), probably because it presents more pristine conditions. The hydrometric level and the ENSO events act synergistically, but distinctively in the study rivers, which should be related to their degree of impacts. Thus, the influence of ENSO in the studied area is apparently minimized, especially in the Rio Paraná, due to the flow control imposed by dams located upstream of the area.
    Description: Avaliou-se os efeitos do El Niño Oscilação Sul (El Niño Southern Oscillation-ENSO) nas assembleias de peixes da planície de inundação do alto rio Paraná. Especificamente, foram testados: (i) os reservatórios minimizam os efeitos do ENSO no nível hidrométrico nos rios que compõem a planície (rios Paraná - intensamente represado e Ivinhema - não represado); (ii) os eventos ENSO influenciam a estrutura das assembleias de peixes dos rios estudados; (iii) o nível hidrométrico e os eventos ENSO atuam sinergicamente na estrutura da assembleia de peixes dos rios Paraná e Ivinhema. Coletaram-se os dados do ENSO no National Oceanic and Atmospheric Administration (NOAA), utilizando como proxy o "Índice Niño Oceânico" (Oceanic Niño Index-ONI). Os dados do nível hidrométrico foram coletados nas estações fluviométricas localizadas na área de estudo. As amostragens de peixes transcorreram trimestralmente entre os anos 2000 e 2018. Em geral, os eventos ENSO correlacionaram-se com o nível hidrométrico dos rios Paraná e Ivinhema, mas com menor correlação para o rio Paraná, provavelmente devido aos efeitos de barragens a montante da planície. As assembleias de peixes dos respectivos rios apresentaram estruturas distintas, e os eventos ENSO pareciam influenciar essa diferenciação. As espécies migradoras possuem correlação negativa com o ONI, mas com registro de maiores abundâncias um ano após os eventos de El Niño ("Lag" de um ano). Maiores valores de riqueza e abundancia total de espécies registradas para o rio Ivinhema, em todos os eventos do ENSO (La Niña, Neutro e El Niño), provavelmente por apresentar condições mais pristinas. O nível hidrométrico e os eventos do ENSO atuam sinergicamente, mas de maneira distinta nos rios estudados, o que deve estar relacionado ao grau de impacto antrópico. Assim, a influência do ENSO na área de estudo é aparentemente minimizada, principalmente no rio Paraná, devido ao controle de vazão imposto por barragens localizadas a montante da área.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Southern Oscillation (ENSO) ; Diversidade taxonômica ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::E::El Nino phenomena ; ASFA_2015::C::Climatic changes ; ASFA_2015::T::Taxonomy
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    Guidelines and limits for the quantification of ra isotopes and related radionuclides with the radium delayed coincidence counter (RaDeCC) (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(4), (2020): e2019JC015544, doi:10.1029/2019JC015544.
    Description: The Radium Delayed Coincidence Counter (RaDeCC) is one of the most extensively used equipment for measuring 223Ra and 224Ra activities in water and sediment samples. Samples are placed in a closed He‐circulation system that carries the Rn produced by the decay of Ra to a scintillation cell. Each alpha decay recorded in the cell is routed to an electronic delayed coincidence system which enables the discrimination of 223Ra and 224Ra. In this study, the measurement and quantification methods using the RaDeCC system are assessed through analyses of registered data in different RaDeCC systems worldwide and a set of simulations. Results of this work indicate that the equations used to correct for 223Ra and 224Ra cross‐talk interferences are only valid for a given range of activities and ratios between isotopes. Above certain limits that are specified in this study, these corrections may significantly overestimate the quantification of 223Ra and 224Ra activities (up to ~40% and 30%, respectively), as well as the quantification of their parents 227Ac and 228Th. High activities of 226Ra may also produce an overestimation of 224Ra activities due to the buildup of 222Rn, especially when long measurements with low activities of 224Ra are performed. An improved method to quantify 226Ra activities from the buildup of 222Rn with the RaDeCC system is also developed in this study. Wethus provide a new set of guidelines for the appropriate quantification of 223Ra, 224Ra, 227Ac, 228Th, and 226Ra with the RaDeCC system.
    Description: The authors acknowledge the support from the Generalitat de Catalunya autonomous government through its funding schema to excellence research groups (grants 2017 SGR 1588 and 2014 SGR 1356) and the support from Spanish Government (projects CGL2013‐48869‐C2‐1‐R/2‐R and CGL2016‐77122‐C2‐1‐576 R/2‐R). We would like to thank all the people who contributed to this work sharing the data of their RaDeCC systems, including J. Scholten, C. Claude, M.A. Charette, J.K. Cochran, and R. Neuholz. We want to express our gratitude to our colleagues from the Laboratori de Radioactivitat Ambiental (Universitat Autònoma de Barcelona) and Dr. W. Geibert (AWI) for improving the quality of this work. A. Alorda‐Kleinglass acknowledges financial support from ICTA “Unit of Excellence” (MinECo, MDM2015‐0552‐17‐1)PhD fellowship, BES‐2017‐080740. Dr. V. Rodellas acknowledges financial support from the Beatriu de Pinós postdoctoral program of the Generalitat de Catalunya autonomous government (2017‐BP‐00334). P. van Beek thanks the support from ANR (MED‐SGD project, ANR‐15‐CE01‐0004). M. Diego‐Feliu acknowledges the economic support from the FI‐2017 fellowships of the Generalitat de Catalunya autonomous government (2017FI_B_00365). Compliance with AGU's DataPolicy: All the https://data.mendeley.com/datasets/jtct7mt8zr/2 codes and spreadsheets used in this article are provided online (supplementary material).
    Description: 2020-09-27
    Keywords: RaDeCC ; Ra isotopes ; quantification ; U/Th series ; submarine groundwater discharge
    Repository Name: Woods Hole Open Access Server
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    The transpolar drift as a source of riverine and shelf-derived trace elements to the central Arctic Ocean (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(5), (2020): e2019JC015920, doi:10.1029/2019JC015920.
    Description: A major surface circulation feature of the Arctic Ocean is the Transpolar Drift (TPD), a current that transports river‐influenced shelf water from the Laptev and East Siberian Seas toward the center of the basin and Fram Strait. In 2015, the international GEOTRACES program included a high‐resolution pan‐Arctic survey of carbon, nutrients, and a suite of trace elements and isotopes (TEIs). The cruises bisected the TPD at two locations in the central basin, which were defined by maxima in meteoric water and dissolved organic carbon concentrations that spanned 600 km horizontally and ~25–50 m vertically. Dissolved TEIs such as Fe, Co, Ni, Cu, Hg, Nd, and Th, which are generally particle‐reactive but can be complexed by organic matter, were observed at concentrations much higher than expected for the open ocean setting. Other trace element concentrations such as Al, V, Ga, and Pb were lower than expected due to scavenging over the productive East Siberian and Laptev shelf seas. Using a combination of radionuclide tracers and ice drift modeling, the transport rate for the core of the TPD was estimated at 0.9 ± 0.4 Sv (106 m3 s−1). This rate was used to derive the mass flux for TEIs that were enriched in the TPD, revealing the importance of lateral transport in supplying materials beneath the ice to the central Arctic Ocean and potentially to the North Atlantic Ocean via Fram Strait. Continued intensification of the Arctic hydrologic cycle and permafrost degradation will likely lead to an increase in the flux of TEIs into the Arctic Ocean.
    Description: Funding for Arctic GEOTRACES was provided by the U.S. National Science Foundation, Swedish Research Council Formas, French Agence Nationale de la Recherche and LabexMER, Netherlands Organization for Scientific Research, and Independent Research Fund Denmark. Data from GEOTRACES cruises GN01 (HLY1502) and GN04 (PS94) have been archived at the Biological and Chemical Oceanography Data Management Office (Biological and Chemical Oceanography Data Management Office (BCO‐DMO); https://www.bco-dmo.org/deployment/638807) and PANGAEA (https://www.pangaea.de/?q=PS94&f.campaign%5B%5D=PS94) websites, respectively. The inorganic carbon data are available at the NOAA Ocean Carbon Data System (OCADS; doi:10.3334/CDIAC/OTG.CLIVAR_ARC01_33HQ20150809).
    Description: 2020-10-08
    Keywords: Arctic Ocean ; Transpolar Drift ; trace elements ; carbon ; nutrients ; GEOTRACES]
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    AutoTuner: high fidelity and robust parameter selection for metabolomics data processing (2020)
    American Chemical Society
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McLean, C., & Kujawinski, E. B. AutoTuner: high fidelity and robust parameter selection for metabolomics data processing. Analytical Chemistry, 92(8), (2020): 5724-5732, doi:10.1021/acs.analchem.9b04804.
    Description: Untargeted metabolomics experiments provide a snapshot of cellular metabolism but remain challenging to interpret due to the computational complexity involved in data processing and analysis. Prior to any interpretation, raw data must be processed to remove noise and to align mass-spectral peaks across samples. This step requires selection of dataset-specific parameters, as erroneous parameters can result in noise inflation. While several algorithms exist to automate parameter selection, each depends on gradient descent optimization functions. In contrast, our new parameter optimization algorithm, AutoTuner, obtains parameter estimates from raw data in a single step as opposed to many iterations. Here, we tested the accuracy and the run-time of AutoTuner in comparison to isotopologue parameter optimization (IPO), the most commonly used parameter selection tool, and compared the resulting parameters’ influence on the properties of feature tables after processing. We performed a Monte Carlo experiment to test the robustness of AutoTuner parameter selection and found that AutoTuner generated similar parameter estimates from random subsets of samples. We conclude that AutoTuner is a desirable alternative to existing tools, because it is scalable, highly robust, and very fast (∼100–1000× speed improvement from other algorithms going from days to minutes). AutoTuner is freely available as an R package through BioConductor.
    Description: We thank Titus Brown and Ben Temperton for advice on the algorithm validation, Arthur Eschenlauer for constructive feedback on the software design, Krista Longnecker for continuous support and discussions, Gabriel Leventhal for mathematics advice, the users of AutoTuner for debugging help through Github, and David Angeles-Albores and two anonymous reviewers for critical feedback on the manuscript. Funding support included the National GEM Consortium and NSF graduate research program fellowships (C.M.) and grants from the MIT Microbiome Center (Award 6936800, E.B.K.) and the Simons Foundation (Award ID #509034, E.B.K.).
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  • 95
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    Advancing an interdisciplinary framework to study seed dispersal ecology (2020)
    Oxford University Press
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Beckman, N. G., Asian, C. E., Rogers, H. S., Kogan, O., Bronstein, J. L., Bullock, J. M., Hartig, F., HilleRisLambers, J., Zhou, Y., Zurell, D., Brodie, J. F., Bruna, E. M., Cantrell, R. S., Decker, R. R., Efiom, E., Fricke, E. C., Gurski, K., Hastings, A., Johnson, J. S., Loiselle, B. A., Miriti, M. N., Neubert, M. G., Pejchar, L., Poulsen, J. R., Pufal, G., Razafindratsima, O. H., Sandor, M. E., Shea, K., Schreiber, S., Schupp, E. W., Snell, R. S., Strickland, C., & Zambrano, J. Advancing an interdisciplinary framework to study seed dispersal ecology. Aob Plants, 12(2), (2020): plz048, doi:10.1093/aobpla/plz048.
    Description: Although dispersal is generally viewed as a crucial determinant for the fitness of any organism, our understanding of its role in the persistence and spread of plant populations remains incomplete. Generalizing and predicting dispersal processes are challenging due to context dependence of seed dispersal, environmental heterogeneity and interdependent processes occurring over multiple spatial and temporal scales. Current population models often use simple phenomenological descriptions of dispersal processes, limiting their ability to examine the role of population persistence and spread, especially under global change. To move seed dispersal ecology forward, we need to evaluate the impact of any single seed dispersal event within the full spatial and temporal context of a plant’s life history and environmental variability that ultimately influences a population’s ability to persist and spread. In this perspective, we provide guidance on integrating empirical and theoretical approaches that account for the context dependency of seed dispersal to improve our ability to generalize and predict the consequences of dispersal, and its anthropogenic alteration, across systems. We synthesize suitable theoretical frameworks for this work and discuss concepts, approaches and available data from diverse subdisciplines to help operationalize concepts, highlight recent breakthroughs across research areas and discuss ongoing challenges and open questions. We address knowledge gaps in the movement ecology of seeds and the integration of dispersal and demography that could benefit from such a synthesis. With an interdisciplinary perspective, we will be able to better understand how global change will impact seed dispersal processes, and potential cascading effects on plant population persistence, spread and biodiversity.
    Description: Ideas for this manuscript initiated during the Seed Dispersal Workshop held in May 2016 at the Socio-Environmental Synthesis Center in Annapolis, MD and supported by the US National Science Foundation Grant DEB-1548194 to N.G.B. and the National Socio-Environmental Synthesis Center under the US National Science Foundation Grant DBI-1052875. D.Z. received funding from the Swiss National Science Foundation (SNF, grant: PZ00P3_168136/1) and from the German Science Foundation (DFG, grant: ZU 361/1-1).
    Keywords: Analytical models ; demography ; global change ; individual-based models ; long-distance seed dispersal ; population models ; seed dispersal
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    The spatial and temporal variability of Mn speciation in the coastal Northwest Atlantic Ocean (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(1),(2020): e2019JC015167, doi:10.1029/2019JC015167.
    Description: Manganese (Mn) is distributed widely throughout the global ocean, where it cycles between three oxidation states that each play important biogeochemical roles. The speciation of Mn in seawater was previously operationally defined on filtration, with soluble Mn presumed to be Mn(II) and solid‐phase Mn as Mn(III/IV) oxides. Recent findings of abundant soluble Mn(III) complexes (Mn(III)‐L) highlights the need to reexamine the redox cycling of Mn, as these complexes can donate or accept electrons. To better understand the complex cycling of Mn in coastal waters, the distribution of Mn species at four Northwest Atlantic sites with different characteristics was examined. Diurnal influences on Mn speciation were investigated within a productive site. At all sites, Mn(III)‐L complexes dominated, particularly in surface waters, and Mn oxides were low in abundance in surface waters but high in bottom waters. Despite intrasite similarities, Mn speciation was highly variable between our stations, emphasizing the diverse processes that impact Mn redox. Diel Mn measurements revealed that the cycling of Mn is also highly variable over time, even on time scales as short as hours. We observed a change of over 100 nM total Mn over 17 hrs and find that speciation changed drastically. These changes could include contributions from biological, light‐mediated, and/or abiotic mechanisms but more likely point to the importance of lateral mixing at coastal sites. This exploration demonstrates the spatial and temporal variability of the Mn redox cycle and indicates that single timepoint vertical profiling is not sufficient when describing the geochemistry of dynamic coastal systems.
    Description: This work was funded by grants from the Chemical Oceanography program of the National Science Foundation (OCE‐1355720 to CMH and CHL). Véronique Oldham thanks Woods Hole Oceanographic Institution for the receipt of the WHOI Postdoctoral Scholarship. Thanks also to Kevin Sutherland, Jen Karolweski, Gabriella Farfan, Kalina Grabb, Kaitlin Bowman, Alison Agather, and Lindsey Starr for the shipboard sampling assistance, as well as the captain and crew of the R/V Endeavor who made the sampling for this research possible. All data presented in the manuscript are available through the Biological and Chemical Oceanography Data Management Office (BCO‐DMO) under Project 756930 at the following link (https://www.bco‐dmo.org/project/756930).
    Description: 2020-06-20
    Keywords: Manganese ; Redox ; Trace Metal ; Diel Cycle ; Coastal Ocean ; Organic Complexation
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    Seismicity of the incoming plate and forearc near the Mariana Trench recorded by ocean bottom seismographs (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 21(4), (2020): e2020GC008953, doi:10.1029/2020GC008953.
    Description: Earthquakes near oceanic trenches are important for studying incoming plate bending and updip thrust zone seismogenesis, yet are poorly constrained using seismographs on land. We use an ocean bottom seismograph (OBS) deployment spanning both the incoming Pacific Plate and the forearc to study seismicity near the Mariana Trench. The yearlong deployment in 2012–2013 consisted of 20 broadband OBSs and 5 suspended hydrophones, with an additional 59 short period OBSs and hydrophones recording for 1 month. We locate 1,692 earthquakes using a nonlinear method with a 3D velocity model constructed from active source profiles and surface wave tomography results. Events occurring seaward of the trench occur to depths of ~35 km below the seafloor, and focal mechanisms of the larger events indicate normal faulting corresponding to plate bending. Significant seismicity emerges about 70 km seaward from the trench, and the seismicity rate increases continuously towards the trench, indicating that the largest bending deformation occurs near the trench axis. These plate‐bending earthquakes occur along faults that facilitate the hydration of the subducting plate, and the lateral and depth distribution of earthquakes is consistent with low‐velocity regions imaged in previous studies. The forearc is marked by a heterogeneous distribution of low magnitude (〈5 Mw) thrust zone seismicity, possibly due to the rough incoming plate topography and/or serpentinization of the forearc. A sequence of thrust earthquakes occurs at depths ~10 km below seafloor and within 20 km of the trench axis, demonstrating that the megathrust is seismically active nearly to the trench.
    Description: We thank the captains, crew, and science teams on the R/V Thompson, Langseth and Melville, Dr. Patrick Shore for providing data management and technical support, and Ivan Komarov and Zhengyang Zhou for assistance with data analysis. We thank Ingo Grevemeyer and an anonymous reviewer for their comments to improve the manuscript. Instrumentation and technical support was provided by the PASSCAL program of the Incorporated Research Institutions in Seismology (IRIS) and the Woods Hole, Lamont‐Doherty, and Scripps facilities of the Ocean Bottom Seismograph Instrumentation Pool (OBSIP). Funding was provided by the MARGINS/GeoPRISMS program through NSF grant OCE‐0841074 (D.A.W.) and the Spencer T. and Ann W. Olin Fellowship program at Washington University in Saint Louis. Raw seismic data used in this study are available through the Data Management Center of the Incorporated Research Institutions for Seismology (http://www.iris.edu/dms/nodes/dmc) under network IDs XF and MI.
    Description: 2020-10-06
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    The impact of wind forcing on the thermal wind shear of a river plume (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mazzini, P. L. F., Chant, R. J., Scully, M. E., Wilkin, J., Hunter, E. J., & Nidzieko, N. J. The impact of wind forcing on the thermal wind shear of a river plume. Journal of Geophysical Research-Oceans, 124, (2019): 7908–7925, doi: 10.1029/2019JC015259.
    Description: A 38-day long time series obtained using a combination of moored Wirewalkers equipped with conductivity-temperature-depth profilers and bottom-mounted and subsurface acoustic Doppler current profilers provided detailed high-resolution observations that resolved near-surface velocity and vertical and cross-shelf density gradients of the Chesapeake Bay plume far field. This unprecedented data set allowed for a detailed investigation of the impact of wind forcing on the thermal wind shear of a river plume. Our results showed that thermal wind balance was a valid approximation for the cross-shelf momentum balance over the entire water column during weak winds (|𝜏w 𝑦 | 〈 0.075 Pa), and it was also valid within the interior during moderate downwelling (−0.125〈 𝜏w 𝑦 〈 −0.075 Pa). Stronger wind conditions, however, resulted in the breakdown of the thermal wind balance in the Chesapeake Bay plume, with thermal wind shear overestimating the observed shear during downwelling and underestimating during upwelling conditions. A momentum budget analysis suggests that viscous stresses from wind-generated turbulence are mainly responsible for the generation of ageostrophic shear.
    Description: This study was supported by the National Science Foundation through Grant OCE 1334231. We thank Ken Roma from R/V Arabella for his incredible support in our daily cruises to survey CBP. We also thank the Crew and Captains of the R/V Sharp and R/V Savannah for their efforts in deploying and recovering the moored instrumentation. Eli Hunter was responsible for preprocessing the data and provided invaluable assistance with field work and data collection. The data used in this publication are available in an open access repository (https://doi.org/10.5281/zenodo.3525394) or by contacting the author.
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  • 99
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    Simple metrics predict salt-marsh sediment fluxes (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nowacki, D. J., & Ganju, N. K. Simple metrics predict salt-marsh sediment fluxes. Geophysical Research Letters, 46, (2019): 12250-12257, doi: 10.1029/2019GL083819.
    Description: The growth (or decay) of salt marshes depends on suspended‐sediment flux into and out of the marsh. Suspended‐sediment concentration (SSC) is a key element of the flux, and SSC‐based metrics reflect the long‐term sediment‐flux trajectories of a variety of salt marshes. One metric, the flood‐ebb SSC differential, correlates with area‐normalized sediment flux and can indicate salt‐marsh resilience over months to years. We hypothesize that these metrics may be relevant over shorter time periods. With data from 13 salt‐marsh channels, we show that sediment flux direction and magnitude can be inferred from SSC differential over a wide range of timescales. Furthermore, in settings characterized by a standing tidal wave, the water‐level gradient can be used instead of velocity to compute the SSC differential, enabling less‐intensive measurements that capture fundamental sediment‐flux parameters. Distilling the sediment‐flux trajectory into simple metrics improves sediment‐budget assessment, drives geomorphic model development, and clarifies field observations.
    Description: We thank Jessie Lacy, Scott Ensign, and an anonymous reviewer for their critical comments. Data analyzed in this study are available via the USGS Oceanographic Time‐Series Database at https://stellwagen.er.usgs.gov. This work was supported by the USGS Coastal/Marine Hazards and Resources Program.
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    Hot and heterogenous high-he-3/He-4 components: New constraints from proto-Iceland plume lavas from Baffin Island (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 20, (2019): 5939-5967, doi: 10.1029/2019GC008654.
    Description: The Icelandic hotspot has erupted basaltic magma with the highest mantle‐derived 3He/4He over a period spanning much of the Cenozoic, from the early‐Cenozoic Baffin Island‐West Greenland flood basalt province (49.8 RA), to mid‐Miocene lavas in northwest Iceland (40.2 to 47.5 RA), to Pleistocene lavas in Iceland's neovolcanic zone (34.3 RA). The Baffin Island lavas transited through and potentially assimilated variable amounts of Precambrian continental basement. We use geochemical indicators sensitive to continental crust assimilation (Nb/Th, Ce/Pb, MgO) to identify the least crustally contaminated lavas. Four lavas, identified as “least crustally contaminated,” have high MgO (〉15 wt.%), and Nb/Th and Ce/Pb that fall within the mantle range (Nb/Th = 15.6 ± 2.6, Ce/Pb = 24.3 ± 4.3). These lavas have 87Sr/86Sr = 0.703008–0.703021, 143Nd/144Nd = 0.513094–0.513128, 176Hf/177Hf = 0.283265–0.283284, 206Pb/204Pb = 17.7560–17.9375, 3He/4He up to 39.9 RA, and mantle‐like δ18O of 5.03–5.21‰. The radiogenic isotopic compositions of the least crustally contaminated lavas are more geochemically depleted than Iceland high‐3He/4He lavas, a shift that cannot be explained by continental crust assimilation in the Baffin suite. Thus, we argue for the presence of two geochemically distinct high‐3He/4He components within the Iceland plume. Additionally, the least crustally contaminated primary melts from Baffin Island‐West Greenland have higher mantle potential temperatures (1510 to 1630 °C) than Siqueiros mid‐ocean ridge basalts (1300 to 1410 °C), which attests to a hot, buoyant plume origin for early Iceland plume lavas. These observations support the contention that the geochemically heterogeneous high‐3He/4He domain is dense, located in the deep mantle, and sampled by only the hottest plumes.
    Description: We acknowledge support from NSF EAR‐1624840 (to M.G.J.), NSF EAR‐1900652 (to M.G.J.), and NSF OCE‐1259218 (to M.D.K). We thank Don Francis for generously providing us access to his collection of Baffin Island lavas. We appreciate helpful discussion and feedback from Roberta Rudnick, Matthew Rioux, Douglas Wilson, and Keith Putirka. Jonathan Pinko is thanked for his help with sample preparation. Rick Carlson's continued generosity is gratefully acknowledged, especially discussions regarding 142Nd/144Nd evolution in the Earth. We acknowledge Al Hofmann for suggesting the use of Nb/Th, instead of Nb/U, in older rocks. We are grateful for helpful discussion with Maud Boyet while in Paris celebrating one of the author's birthdays. We thank Lotte Larsen and Asger Pedersen for advice and discussion regarding West Greenland samples. We thank C. Herzberg and G. Fitton for thorough and helpful reviews, which greatly improved this manuscript. All data published in this manuscript are available in the EarthChem data repository (https://doi.org/10.1594/IEDA/111373).
    Description: 2020-05-07
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