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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Gonçalves-Araujo, Rafael; de Souza, Márcio Silva; Mendes, Carlos Rafael; Souza, Ronald Buss; Tavano, Virginia Maria; Schultz, Cristina; Pollery, Ricardo Cesar (submitted): Hydrographic control over winter phytoplankton assemblages in southern Brazil. PLoS ONE
    Publication Date: 2023-12-09
    Description: The response of phytoplankton assemblages to hydrographical forcing across the southern Brazilian shelf was studied based on data collected during wintertime (June/2012), complemented with MODIS-Aqua satellite imagery. The in situ data set was comprised by water column structure properties (derived from CTD casts), dissolved inorganic nutrients (ammonium, nitrite, nitrate, phosphate and silicate) and phytoplankton biomass [chlorophyll a (Chl a) concentration] and composition. Phytoplankton assemblages were assessed by both microscopy and HPLC-CHEMTAX approaches. A canonical correspondence analysis associating physical, chemical and phytoplankton composition data at surface evinced a tight coupling between the phytoplankton community and hydrographic conditions, with remarkable environmental gradients across three different domains: the pelagic, outer shelf Tropical Water (TW); the mid shelf domain under influence of Subtropical Shelf Water (STSW); and the inner shelf domain mainly under influence of riverine outflow of the Plata River Plume Water (PPW). Results showed that intrusion of low salinity and nutrient-rich PPW stimulated the phytoplankton growth and diversity within the inner shelf region, with enhanced Chl a levels (〉1.3 mg/m**3) and a great abundance of diatoms, ciliates, dinoflagellates, raphidophyceans and cryptophytes. Conversely, other diatoms (e.g. Rhizosolenia clevei), tiny species of prochlorophytes and cyanobacteria and a noticeable contribution of dinoflagellates and other flagellates associated with lower Chl a levels (〈0.93 mg/m**3), characterized the TW domain, where low nutrient concentrations and deep upper mixed layer were found. The transitional mid shelf domain showed intermediate levels of both nutrients and Chl a (ranging 1.06-1.59 mg/m**3), and phytoplankton was mainly composed by dinoflagellates, such as Dinophysis spp., and gymnodinioids. Results have shown considerable phytoplankton diversity in winter at that section of the southwestern Atlantic Ocean.
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 2
    Publication Date: 2023-12-09
    Keywords: ACEx/SIMTECO; ACEx/SIMTECO_1; ACEx/SIMTECO_10; ACEx/SIMTECO_11; ACEx/SIMTECO_12; ACEx/SIMTECO_13; ACEx/SIMTECO_15; ACEx/SIMTECO_16; ACEx/SIMTECO_17; ACEx/SIMTECO_18; ACEx/SIMTECO_19; ACEx/SIMTECO_2; ACEx/SIMTECO_20; ACEx/SIMTECO_21; ACEx/SIMTECO_22; ACEx/SIMTECO_23; ACEx/SIMTECO_24; ACEx/SIMTECO_25; ACEx/SIMTECO_26; ACEx/SIMTECO_27; ACEx/SIMTECO_28; ACEx/SIMTECO_29; ACEx/SIMTECO_3; ACEx/SIMTECO_30; ACEx/SIMTECO_31; ACEx/SIMTECO_4; ACEx/SIMTECO_5; ACEx/SIMTECO_6; ACEx/SIMTECO_7; ACEx/SIMTECO_8; ACEx/SIMTECO_9; Ammonium; Calculated; Chlorophyll a; Cruzeiro do Sul; Cryptophytes; CTD; CTD/Rosette; CTD-RO; Cyanobacteria; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Diatoms; Dinoflagellates; Elevation of event; Event label; Haptophytes; HPLC/CHEMTAX (Mackey et al. 1996); Latitude of event; Longitude of event; Mixed layer depth, upper; Nitrate; Nitrite; Nitrogen, inorganic, dissolved; Phosphate; Prasinophytes; Prochlorophytes; Raphydophyceae; Salinity; Silicate; South Atlantic Ocean; Stability at pycnocline; Temperature, water; Temperature, water, potential
    Type: Dataset
    Format: text/tab-separated-values, 648 data points
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  • 3
    Publication Date: 2023-12-09
    Keywords: ACEx/SIMTECO; ACEx/SIMTECO_1; ACEx/SIMTECO_10; ACEx/SIMTECO_11; ACEx/SIMTECO_12; ACEx/SIMTECO_13; ACEx/SIMTECO_15; ACEx/SIMTECO_16; ACEx/SIMTECO_17; ACEx/SIMTECO_18; ACEx/SIMTECO_19; ACEx/SIMTECO_2; ACEx/SIMTECO_20; ACEx/SIMTECO_21; ACEx/SIMTECO_22; ACEx/SIMTECO_23; ACEx/SIMTECO_24; ACEx/SIMTECO_25; ACEx/SIMTECO_26; ACEx/SIMTECO_27; ACEx/SIMTECO_28; ACEx/SIMTECO_29; ACEx/SIMTECO_3; ACEx/SIMTECO_30; ACEx/SIMTECO_31; ACEx/SIMTECO_4; ACEx/SIMTECO_5; ACEx/SIMTECO_6; ACEx/SIMTECO_7; ACEx/SIMTECO_8; ACEx/SIMTECO_9; Calculated; Cruzeiro do Sul; CTD; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Latitude of event; Longitude of event; Salinity; South Atlantic Ocean; Temperature, water; Temperature, water, potential
    Type: Dataset
    Format: text/tab-separated-values, 21304 data points
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  • 4
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schultz, C., Doney, S. C., Hauck, J., Kavanaugh, M. T., & Schofield, O. Modeling phytoplankton blooms and inorganic carbon responses to sea-ice variability in the West Antarctic Peninsula. Journal of Geophysical Research: Biogeosciences, 126(4), (2021): e2020JG006227, https://doi.org/10.1029/2020JG006227.
    Description: The ocean coastal-shelf-slope ecosystem west of the Antarctic Peninsula (WAP) is a biologically productive region that could potentially act as a large sink of atmospheric carbon dioxide. The duration of the sea-ice season in the WAP shows large interannual variability. However, quantifying the mechanisms by which sea ice impacts biological productivity and surface dissolved inorganic carbon (DIC) remains a challenge due to the lack of data early in the phytoplankton growth season. In this study, we implemented a circulation, sea-ice, and biogeochemistry model (MITgcm-REcoM2) to study the effect of sea ice on phytoplankton blooms and surface DIC. Results were compared with satellite sea-ice and ocean color, and research ship surveys from the Palmer Long-Term Ecological Research (LTER) program. The simulations suggest that the annual sea-ice cycle has an important role in the seasonal DIC drawdown. In years of early sea-ice retreat, there is a longer growth season leading to larger seasonally integrated net primary production (NPP). Part of the biological uptake of DIC by phytoplankton, however, is counteracted by increased oceanic uptake of atmospheric CO2. Despite lower seasonal NPP, years of late sea-ice retreat show larger DIC drawdown, attributed to lower air-sea CO2 fluxes and increased dilution by sea-ice melt. The role of dissolved iron and iron limitation on WAP phytoplankton also remains a challenge due to the lack of data. The model results suggest sediments and glacial meltwater are the main sources in the coastal and shelf regions, with sediments being more influential in the northern coast.
    Description: C. Schultz, S. C. Doney, M. T. Kavanaugh, and O. Schofield acknowledge support by the US National Science Foundation (Grant no. PLR-1440435), and C. Schultz and S. C. Doney acknowledge support from the University of Virginia. This research has also received funding from the Helmholtz Young Investigator Group Marine Carbon and Ecosystem Feedbacks in the Earth System (MarESys), Grant number VH-NG-1301.
    Keywords: Air-sea fluxes ; Biogeochemical modeling ; Inorganic carbon cycle ; Phytoplankton bloom ; Sea ice ; West Antarctic Peninsula
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schultz, C., Doney, S. C., Zhang, W. G., Regan, H., Holland, P., Meredith, M. P., & Stammerjohn, S. Modeling of the influence of sea ice cycle and Langmuir circulation on the upper ocean mixed layer depth and freshwater distribution at the West Antarctic Peninsula. Journal of Geophysical Research: Oceans, 125(8), (2020): e2020JC016109, doi:10.1029/2020JC016109.
    Description: The Southern Ocean is chronically undersampled due to its remoteness, harsh environment, and sea ice cover. Ocean circulation models yield significant insight into key processes and to some extent obviate the dearth of data; however, they often underestimate surface mixed layer depth (MLD), with consequences for surface water‐column temperature, salinity, and nutrient concentration. In this study, a coupled circulation and sea ice model was implemented for the region adjacent to the West Antarctic Peninsula, a climatically sensitive region which has exhibited decadal trends towards higher ocean temperature, shorter sea ice season, and increasing glacial freshwater input, overlain by strong interannual variability. Hindcast simulations were conducted with different air‐ice drag coefficients and Langmuir circulation parameterizations to determine the impact of these factors on MLD. Including Langmuir circulation deepened the surface mixed layer, with the deepening being more pronounced in the shelf and slope regions. Optimal selection of an air‐ice drag coefficient also increased modeled MLD by similar amounts and had a larger impact in improving the reliability of the simulated MLD interannual variability. This study highlights the importance of sea ice volume and redistribution to correctly reproduce the physics of the underlying ocean, and the potential of appropriately parameterizing Langmuir circulation to help correct for biases towards shallow MLD in the Southern Ocean. The model also reproduces observed freshwater patterns in the West Antarctic Peninsula during late summer and suggests that areas of intense summertime sea ice melt can still show net annual freezing due to high sea ice formation during the winter.
    Description: C. Schultz and S. Doney acknowledge support by the U.S. National Science Foundation (grant PLR‐1440435 to the Palmer Long Term Ecological Research program) and support from the University of Virginia. W. G. Zhang acknowledge support by the U.S. National Science Foundation (grant OPP‐1643901). The MITgcm model is an open source model (mitgcm.org). The version used in this study, with added parameterizations and specific configurations, is on C. Schultz’s github (https://github.com/crisoceano/WAP_MITgcm). A copy of the files with specific configurations for this study, the forcing files needed for the simulations, and a copy of the files used for the KPP package are in three separate records on zenodo.org, under DOIs 10.5281/zenodo.3627365, 10.5281/zenodo.3627564, and 10.5281/zenodo.3627742.
    Keywords: West Antarctic Peninsula ; sea ice ; Langmuir circulation ; mixed layer depth ; glacial runoff
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    Unknown
    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-26
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Oceanography/Applied Ocean Science and Engineering at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2019.
    Description: Over the past several decades, the West Antarctic Peninsula (WAP) has undergone physical and ecological changes at a rapid pace, with warming surface ocean and a sharp decrease in the duration of the sea ice season. The impact of these changes in the ocean chemistry and ecosystem are not fully understood and have been investigated by the Palmer-LTER since 1991. Given the data acquisition constraints imposed by weather conditions in this region, an ocean circulation, sea ice and biogeochemistry model was implemented to help fill the gaps in the dataset. The results with the present best case from the suite of sensitivity experiments indicate that the model is able to represent the seasonal and interannual variations observed in the circulation, water mass distribution and sea ice observed in the WAP, and has identified gaps in the observations that could guide improvement of the simulation of the regional biogeochemistry. Comparison of model results with data from the Palmer-LTER project suggests that the large spatial and temporal variability observed in the phytoplankton bloom in the WAP is influenced by variability in the glacial sources of dissolved iron. Seasonal progression of the phytoplankton bloom is well represented in the model, and values of vertically integrated net primary production (NPP) are largely consistent with observations. Although a bias towards lower surface dissolved inorganic carbon (DIC) and alkalinity was identified in the model results, interannual variability was similar to the observed in the Palmer-LTER cruise data.
    Keywords: Ocean temperature ; Biogeochemistry ; Plankton ; Carbon cycle (Biogeochemistry) ; Antarctic Peninsula (Antarctica)
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 7
    Publication Date: 2020-07-29
    Description: The coastal ecosystem of the Gulf of Alaska (GOA) is especially vulnerable to the effects of ocean acidification and climate change. Detection of these long-term trends requires a good understanding of the system’s natural state. The GOA is a highly dynamic system that exhibits large inorganic carbon variability on subseasonal to interannual timescales. This variability is poorly understood due to the lack of observations in this expansive and remote region. We developed a new model setup for the GOA that couples the three-dimensional Regional Oceanic Model System (ROMS) and the Carbon, Ocean Biogeochemistry and Lower Trophic (COBALT) ecosystem model. To improve our conceptual understanding of the system, we conducted a hindcast simulation from 1980 to 2013. The model was explicitly forced with temporally and spatially varying coastal freshwater discharges from a high-resolution terrestrial hydrological model, thereby affecting salinity, alkalinity, dissolved inorganic carbon, and nutrient concentrations. This represents a substantial improvement over previous GOA modeling attempts. Here, we evaluate the model on seasonal to interannual timescales using the best available inorganic carbon observations. The model was particularly successful in reproducing observed aragonite oversaturation and undersaturation of near-bottom water in May and September, respectively. The largest deficiency in the model is its inability to adequately simulate springtime surface inorganic carbon chemistry, as it overestimates surface dissolved inorganic carbon, which translates into an underestimation of the surface aragonite saturation state at this time. We also use the model to describe the seasonal cycle and drivers of inorganic carbon parameters along the Seward Line transect in under-sampled months. Model output suggests that the majority of the near-bottom water along the Seward Line is seasonally undersaturated with respect to aragonite between June and January, as a result of upwelling and remineralization. Such an extensive period of reoccurring aragonite undersaturation may be harmful to ocean acidification-sensitive organisms. Furthermore, the influence of freshwater not only decreases the aragonite saturation state in coastal surface waters in summer and fall, but it simultaneously decreases the surface partial pressure of carbon dioxide (pCO2), thereby decoupling the aragonite saturation state from pCO2. The full seasonal cycle and geographic extent of the GOA region is under-sampled, and our model results give new and important insights for months of the year and areas that lack in situ inorganic carbon observations.
    Print ISSN: 1726-4170
    Electronic ISSN: 1726-4189
    Topics: Biology , Geosciences
    Published by Copernicus on behalf of European Geosciences Union.
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  • 8
    Publication Date: 2018-08-01
    Print ISSN: 0924-7963
    Electronic ISSN: 1879-1573
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Geosciences , Physics
    Published by Elsevier
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  • 9
  • 10
    Publication Date: 2021-04-01
    Print ISSN: 2169-9275
    Electronic ISSN: 2169-9291
    Topics: Geosciences , Physics
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