ALBERT

Description: In this study MODerate resolution Imaging Spectroradiometer (MODIS) Aqua retrievals of aerosol optical thickness (AOT) at 555 nm are compared to sun-photometer measurements from Svalbard for a period of 9 years. For the 642 daily coincident measurements that were obtained, MODIS AOT generally varies within the predicted uncertainty of the retrieval over ocean (ΔAOT = ±0.03 ± 0.05 · AOT). The results from the remote sensing have been used to examine the accuracy in estimates of aerosol optical properties in the Arctic, generated by global climate models and from in-situ measurements at the Zeppelin station, Svalbard. AOT simulated with the Norwegian Earth System Model (NorESM1-M)/ CAM4-Oslo global climate model does not reproduce the observed seasonal variability of the Arctic aerosol. The model overestimates clear-sky AOT by nearly a factor of 2 for the background summer season, while tending to underestimate the values in the spring season. Furthermore, large differences in all-sky AOT of up to one order of magnitude are found for the Coupled Model Intercomparison Project (CMIP5) model ensemble for the spring and summer seasons. Large differences between satellite/ground-based remote sensing of AOT and AOT estimated from dry and humidified scattering coefficients are found for the subarctic marine boundary layer in summer.

Description: Organisms in all domains, Archaea, Bacteria, and Eukarya will respond to climate change with differential vulnerabilities resulting in shifts in species distribution, coexistence, and interactions. The identification of unifying principles of organism functioning across all domains would facilitate a cause and effect understanding of such changes and their implications for ecosystem shifts. For example, the functional specialization of all organisms in limited temperature ranges leads us to ask for unifying functional reasons. Organisms also specialize in either anoxic or various oxygen ranges, with animals and plants depending on high oxygen levels. Here, we identify thermal ranges, heat limits of growth, and critically low (hypoxic) oxygen concentrations as proxies of tolerance in a meta-analysis of data available for marine organisms, with special reference to domain-specific limits. For an explanation of the patterns and differences observed, we define and quantify a proxy for organismic complexity across species from all domains. Rising complexity causes heat (and hypoxia) tolerances to decrease from Archaea to Bacteria to uni- and then multicellular Eukarya. Within and across domains, taxon-specific tolerance limits likely reflect ultimate evolutionary limits of its species to acclimatization and adaptation. We hypothesize that rising taxon-specific complexities in structure and function constrain organisms to narrower environmental ranges. Low complexity as in Archaea and some Bacteria provide life options in extreme environments. In the warmest oceans, temperature maxima reach and will surpass the permanent limits to the existence of multicellular animals, plants and unicellular phytoplankter. Smaller, less complex unicellular Eukarya, Bacteria, and Archaea will thus benefit and predominate even more in a future, warmer, and hypoxic ocean.

Description: Fragilariopsis kerguelensis, a dominant diatom species throughout the Antarctic Circumpolar Current, is coined to be one of the main drivers of the biological silicate pump. Here, we study the distribution of this important species and expected consequences of climate change upon it, using correlative species distribution modeling and publicly available presence-only data. As experience with SDM is scarce for marine phytoplankton, this also serves as a pilot study for this organism group. Southern Ocean. We used the maximum entropy method to calculate distribution models for the diatom F. kerguelensis based on yearly and monthly environmental data (sea surface temperature, salinity, nitrate and silicate concentrations). Observation data were harvested from GBIF and the Global Diatom Database, and for further analyses also from the Hustedt Diatom Collection (BRM). The models were projected on current yearly and seasonal environmental data to study current distribution and its seasonality. Furthermore, we projected the seasonal model on future environmental data obtained from climate models for the year 2100. Projected on current yearly averaged environmental data, all models showed similar distribution patterns for F. kerguelensis. The monthly model showed seasonality, for example, a shift of the southern distribution boundary toward the north in the winter. Projections on future scenarios resulted in a moderately to negligibly shrinking distribution area and a change in seasonality. We found a substantial bias in the publicly available observation datasets, which could be reduced by additional observation records we obtained from the Hustedt Diatom Collection. Present day distribution patterns inferred from the models coincided well with background knowledge and previous reports about F. kerguelensis distribution, showing that maximum entropy-based distribution models are suitable to map distribution patterns for oceanic planktonic organisms. Our scenario projections indicate moderate effects of climate change upon the biogeography of F. kerguelensis.

Description: Eulimnogammarus verrucosus is an amphipod endemic to the unique ecosystem of Lake Baikal and serves as an emerging model in ecotoxicological studies. We report here on a survey sequencing of its genome as a first step to establish sequence resources for this species. From a single lane of paired-end sequencing data, we estimated the genome size as nearly 10 Gb and we obtained an overview of the repeat content. At least two-thirds of the genome are non-unique DNA, and a third of the genomic DNA is composed of just five families of repetitive elements, including low-complexity sequences. Attempts to use off-the-shelf assembly tools failed on the available low-coverage data both before and after removal of highly repetitive components. Using a seed-based approach we nevertheless assembled short contigs covering 33 pre-microRNAs and the homeodomain-containing exon of nine Hox genes. The absence of clear evidence for paralogs implies that a genome duplication did not contribute to the large genome size. We furthermore report the assembly of the mitochondrial genome using a new, guided “crystallization” procedure. The initial results presented here set the stage for a more complete sequencing and analysis of this large genome.

Description: In this study latent heat flux (λE) measurements made at 65 boreal and arctic eddy-covariance (EC) sites were analyses by using the Penman–Monteith equation. Sites were stratified into nine different ecosystem types: harvested and burnt forest areas, pine forests, spruce or fir forests, Douglas-fir forests, broadleaf deciduous forests, larch forests, wetlands, tundra and natural grasslands. The Penman–Monteith equation was calibrated with variable surface resistances against half-hourly eddy-covariance data and clear differences between ecosystem types were observed. Based on the modeled behavior of surface and aerodynamic resistances, surface resistance tightly control λE in most mature forests, while it had less importance in ecosystems having shorter vegetation like young or recently harvested forests, grasslands, wetlands and tundra. The parameters of the Penman–Monteith equation were clearly different for winter and summer conditions, indicating that phenological effects on surface resistance are important. We also compared the simulated λE of different ecosystem types under meteorological conditions at one site. Values of λE varied between 15% and 38% of the net radiation in the simulations with mean ecosystem parameters. In general, the simulations suggest that λE is higher from forested ecosystems than from grasslands, wetlands or tundra-type ecosystems. Forests showed usually a tighter stomatal control of λE as indicated by a pronounced sensitivity of surface resistance to atmospheric vapor pressure deficit. Nevertheless, the surface resistance of forests was lower than for open vegetation types including wetlands. Tundra and wetlands had higher surface resistances, which were less sensitive to vapor pressure deficits. The results indicate that the variation in surface resistance within and between different vegetation types might play a significant role in energy exchange between terrestrial ecosystems and atmosphere. These results suggest the need to take into account vegetation type and phenology in energy exchange modeling.

Description: The transient response of the Atlantic Meridional Overturning Circulation (AMOC) to a deglacial ice-sheet retreat is studied using the Community Climate System Model version 3 (CCSM3), with a focus on orographic effects rather than meltwater discharge. It is found that the AMOC weakens significantly (41%) in response to the deglacial ice-sheet retreat. The AMOC weakening follows the decrease of the Northern Hemisphere ice-sheet volume linearly, with no evidence of abrupt thresholds. A wind-driven mechanism is proposed to explain the weakening of the AMOC: lowering the Northern Hemisphere ice sheets induces a northward shift of the westerlies, which causes a rapid eastward sea-ice transport and expanded sea-ice cover over the subpolar North Atlantic; this expanded sea ice insulates the ocean from heat loss and leads to suppressed deep convection and a weakened AMOC. A sea ice-ocean positive feedback could be further established between the AMOC decrease and sea-ice expansion.

Description: The impact of assimilating sea ice thickness data derived from ESA's Soil Moisture and Ocean Salinity (SMOS) satellite together with Special Sensor Microwave Imager/Sounder (SSMIS) sea ice concentration data of the National Snow and Ice Data Center (NSIDC) in a coupled sea ice-ocean model is examined. A period of 3 months from 1 November 2011 to 31 January 2012 is selected to assess the forecast skill of the assimilation system. The 24 h forecasts and longer forecasts are based on the Massachusetts Institute of Technology general circulation model (MITgcm), and the assimilation is performed by a localized Singular Evolutive Interpolated Kalman (LSEIK) filter. For comparison, the assimilation is repeated only with the SSMIS sea ice concentrations. By running two different assimilation experiments, and comparing with the unassimilated model, independent satellite-derived data, and in situ observation, it is shown that the SMOS ice thickness assimilation leads to improved thickness forecasts. With SMOS thickness data, the sea ice concentration forecasts also agree better with observations, although this improvement is smaller.

Description: A new seismostratigraphic model has been established within the Arctic Ocean adjacent to the East Siberian Shelf on the basis of multichannel seismic reflection data acquired along a transect at 81°N. Ages for the sedimentary units were estimated via links to seismic lines and drill site data of the US Chukchi Shelf, the Lomonosov Ridge, and the adjacent Laptev Shelf. Two distinct seismic units were mapped throughout the area and are the constraints for dating the remaining strata. The lower marker unit, a pronounced high-amplitude reflector sequence (HARS), is the most striking stratigraphic feature over large parts of the Arctic Ocean. It indicates a strong and widespread change in deposition conditions. Probably, it developed during Oligocene times when a reorientation of Arctic Plates took place, accompanied by the gradual opening of the Fram Strait, and a widespread regression of sea level. The top of the HARS likely marks the end of Oligocene/early Miocene (23Ma). An age estimate for the base of the sequence is less clear but likely corresponds to base of Eocene (˜56Ma). The second marked unit detected on the seismic lines parallels the seafloor with a thickness of about 200ms two-way travel time (160 m). Its base is marked by a change from a partly transparent sequence with weak amplitude reflections below to a set of continuous high-amplitude reflectors above. This interface likely marks the transition to large-scale glaciation of the northern hemisphere and therefore is ascribed to the top Miocene (5.3 Ma).

Description: Aim Fossil pollen spectra from lake sediments in central and western Mongolia have been used to interpret past climatic variations, but hitherto no suitable modern pollen–climate calibration set has been available to infer past climate changes quantitatively. We established such a modern pollen dataset and used it to develop a transfer function model that we applied to a fossil pollen record in order to investigate: (1) whether there was a significant moisture response to the Younger Dryas event in north-western Mongolia; and (2) whether the early Holocene was characterized by dry or wet climatic conditions. Location Central and western Mongolia. Methods We analysed pollen data from surface sediments from 90 lakes. A transfer function for mean annual precipitation (Pann) was developed with weighted averaging partial least squares regression (WA-PLS) and applied to a fossil pollen record from Lake Bayan Nuur (49.98° N, 93.95° E, 932 m a.s.l.). Statistical approaches were used to investigate the modern pollen–climate relationships and assess model performance and reconstruction output. Results Redundancy analysis shows that the modern pollen spectra are characteristic of their respective vegetation types and local climate. Spatial autocorrelation and significance tests of environmental variables show that the WA-PLS model for Pann is the most valid function for our dataset, and possesses the lowest root mean squared error of prediction. Main conclusions Precipitation is the most important predictor of pollen and vegetation distributions in our study area. Our quantitative climate reconstruction indicates a dry Younger Dryas, a relatively dry early Holocene, a wet mid-Holocene and a dry late Holocene.

Description: Ice shelves play an important role in stabilizing the interior grounded ice of the large ice sheets. The thinning of major ice shelves observed in recent years, possibly in connection to warmer ocean waters coming into contact with the ice-shelf base, has focused attention on the ice-ocean interface. Here we reveal a complex network of sub ice-shelf channels under the Fimbul Ice Shelf, Antarctica, mapped using ground-penetrating radar over a 100 km2 grid. The channels are 300–500 m wide and 50 m high, among the narrowest of any reported. Observing narrow channels beneath an ice shelf that is mainly surrounded by cold ocean waters, with temperatures close to the surface freezing point, shows that channelized basal melting is not restricted to rapidly melting ice shelves, indicating that spatial melt patterns around Antarctica are likely to vary on scales that are not yet incorporated in ice-ocean models.

Description: Over the polar oceans, near-surface atmospheric transport of momentum is strongly influenced by sea-ice surface topography. The latter is analyzed on the basis of laser altimeter data obtained during airborne campaigns between 1995 and 2011 over more than 10,000 km of flight distance in different regions of the Arctic Ocean. Spectra of height and spacing between topographic features averaged over 10 km flight sections show that typical values are 0.45 m for the mean height and about 20 m for the mean spacing. Nevertheless, the variability is high and the spatial variability is stronger than the temporal one. The total topography spectrum is divided into a range with small obstacles (between 0.2 m and 0.8 m height) and large obstacles (≥0.8 m). Results show that large pressure ridges represent the dominant topographic feature only along the coast of Greenland. In the Central Arctic, the concentration of large ridges decreased over the years, accompanied by an increase of small obstacles concentration and this might be related to decreasing multiyear ice. The application of a topography-dependent parameterization of neutral atmospheric drag coefficients reflects the large variability in the sea-ice topography and reveals characteristic differences between the regions. Based on the analysis of the two spectral ranges, we find that the consideration of only large pressure ridges is not enough to characterize the roughness degree of an ice field, and the values of drag coefficients are in most regions strongly influenced by small obstacles.

Description: Large-scale patterns of net community production (NCP) were estimated during the late summer cruise ARK-XXVI/3 (TransArc, August/September 2011) to the central Arctic Ocean. Several approaches were used based on the following: (i) continuous measurements of surface water oxygen to argon ratios (O2/Ar), (ii) underway measurements of surface partial pressure of carbon dioxide (pCO2), (iii) discrete samples of dissolved inorganic carbon, and (iv) dissolved inorganic nitrogen and phosphate. The NCP estimates agreed well within the uncertainties associated with each approach. The highest late summer NCP (up to 6 mol C m-2) was observed in the marginal sea ice zone region. Low values (〈1 mol C m-2) were found in the sea ice-covered deep basins with a strong spatial variability. Lowest values were found in the Amundsen Basin and moderate values in the Nansen and Makarov Basins with slightly higher estimates over the Mendeleev Ridge. Our findings support a coupling of NCP to sea ice coverage and nutrient supply and thus stress a potential change in spatial and temporal distribution of NCP in a future Arctic Ocean. To follow the evolution of NCP in space and time, it is suggested to apply one or several of these approaches in shipboard investigations with a time interval of 3 to 5 years.

Description: A Spectral Radiation Buoy (SRB) was developed to autonomously measure the spectral incident, reflected, and transmitted spectral solar radiation (350-800 nm) above and below sea ice. The SRB was deployed on drifting first-year sea ice near the North Pole in mid-April 2012, together with velocity and ice mass balance buoys. The buoys drifted southward and reached Fram Strait after approximately 7 months, covering a complete melt season. At the SRB site, snowmelt started on 10 June, and had completely disappeared by 14 July. Surface albedo was above 0.85 until snowmelt onset and decreased rapidly with the progression of snowmelt. Albedo was lowest on 14 July, when the observed surface was likely a mixture of bare ice and melt pond(s). The transmitted irradiance measured under the ice was largest in July, with a monthly average of 20 W m(-2), compared to 〈0.3 W m(-2) premelt. Under-ice irradiance peaked on 19-20 July, with a daily average around 35 W m(-2). From mid-April to mid-September, the solar energy transmitted through the ice into the ocean contributed about two-thirds of the energy required for the observed bottom melt (0.49 m). The energy absorbed by the ice after snowmelt was enough to melt an additional 0.1 m of ice. Solar energy incident on open water and melt ponds provided significant additional heating, indicating solar heating could explain all of the observed bottom melt in this region in summer 2012.

Description: The interpretation of seismic refraction and gravity data acquired in 2010 gives new insights into the crustal structure of the West Greenland coast and the adjacent deep central Baffin Bay basin. Underneath Melville Bay, the depth of the Moho varies between 26 to 17 km. Stretched continental crust with a thickness of 25 to 14 km and deep sedimentary basins are present in this area. The deep Melville Bay Graben contains an up to ~11km thick infill of consolidated and unconsolidated sediments with velocities of 1.6 to 4.9 km/s. Seawards, at the ~60 km wide transition between oceanic and stretched continental crust, a mount-shaped magmatic structure is observed, which most likely formed prior to the initial formation of oceanic crust. The up to 4 km high magmatic structure is underlain by a ~2 km thick and ~50 km wide high velocity lower crust. More to the west, in the oceanic part of the Baffin Bay basin, we identify a 2-layered, 3.5 to 6 km thin igneous oceanic crust with increasing thickness toward the shelf. Beneath the oceanic crust, the depth of the Moho ranges between 11.5 and 13.5 km. In the western part of the profile, oceanic layer 3 is unusually thin (~1.5 km) A possible explanation for the thin crust is accretion due to slow spreading, although the basement is notably smooth compared to the basement of other regions formed by ultra-slow spreading. The oceanic crust is underlain by partly serpentinized upper mantle with velocities of 7.6 to 7.8 km/s.

Description: Stratospheric ozone depletion and emission of greenhouse gases lead to a trend of the Southern Annular Mode (SAM) towards its high-index polarity. The positive phase of the SAM is characterised by stronger than usual westerly winds that induce changes in the physical carbon transport. Changes in the natural carbon budget of the upper 100 m of the Southern Ocean in response to a positive SAM phase are explored with a coupled ecosystem-general circulation model and regression analysis. Previously overlooked processes that are important for the upper ocean carbon budget during a positive SAM period are identified, namely export production and downward transport of carbon north of the Polar Front (PF) as large as the upwelling in the south. The limiting micronutrient iron is brought into the surface layer by upwelling and stimulates phytoplankton growth and export production, but only in summer. This leads to a drawdown of carbon and less summertime outgassing (or more uptake) of natural CO2. In winter, biological mechanisms are inactive and the surface ocean equilibrates with the atmosphere by releasing CO2. In the annual mean, the upper ocean region south of the PF loses more carbon by additional export production than by the release of CO2 into the atmosphere, highlighting the role of the biological carbon pump in response to a positive SAM event.

Description: Ice shelves are formed by the viscous flow of inland ice into the ocean, they are floating and loosing mass by iceberg calving. There are two different kinds of calving: large tabular icebergs detach as singular events in time, and small scale calving occuring on a rather continuous time scale. Three visco-elastic approaches are discussed, in order to derive a general law for calving rates applicable to small scale calving. The results are highly dependent on the termination criterium for each approach, hence the computed calving rate has to be adapted and validated with measurements to get the most qualified value.

Description: Break-up events in ice shelves have been studied extensively during the last years. One popular assumption links disintegration events to surface melting of the ice shelf in conjunction with growing melt-water ponds, leading to hydro-fracture. As this explanation only holds during warm seasons [1], the possibility of frost wedging as forcing mechanism for autumn and winter break-up events is considered. Frost wedging can only occur if a closed ice lid seals the water inside the crack. Hence, the present study of frost wedging in a single crack uses ice lid thicknesses to evaluate the additional pressure on the crack faces. The investigation of the resulting stress intensity factor as a measure of crack criticality follows consequently. The results show that freezing water inside a crack can result in unstable crack growth of an initially stable water filled crack.

Description: Ensemble experiments with a climate model are carried out in order to explore how incorporating a stochastic ice strength parameterization to account for model uncertainty affects estimates of potential sea ice predictability on time scales from days to seasons. The impact of this new parameterization depends strongly on the spatial scale, lead time and the hemisphere being considered: Whereas the representation of model uncertainty increases the ensemble spread of Arctic sea ice thickness predictions generated by atmospheric initial perturbations up to about 4 weeks into the forecast, rather small changes are found for longer lead times as well as integrated quantities such as total sea ice area. The regions where initial condition uncertainty generates spread in sea ice thickness on subseasonal time scales (primarily along the ice edge) differ from that of the stochastic sea ice strength parameterization (along the coast lines and in the interior of the Arctic). For the Antarctic the influence of the stochastic sea ice strength parameterization is much weaker due to the predominance of thinner first year ice. These results suggest that sea ice data assimilation and prediction on subseasonal time scales could benefit from taking model uncertainty into account, especially in the Arctic.

Description: Whereas millennial to submillennial climate variability has been identified during the current interglacial period, past interglacial variability features remain poorly explored because of lacking data at sufficient temporal resolutions. Here we present new deuterium data from the EPICA Dome C ice core, documenting at decadal resolution temperature changes occurring over the East Antarctic plateau during the warmer-than-today last interglacial. Expanding previous evidence of instabilities during the last interglacial, multicentennial subevents are identified and labeled for the first time in a past interglacial context. A variance analysis further reveals two major climatic features. First, an increase in variability is detected prior to the glacial inception, as already observed at the end of Marine Isotopic Stage 11 in the same core. Second, the overall variance level is systematically higher during the last interglacial than during the current one, suggesting that a warmer East Antarctic climate may also be more variable.

Description: We analyze simulated sea ice changes in eight different Earth System Models that have conducted experiment G1 of the Geoengineering Model Intercomparison Project (GeoMIP). The simulated response of balancing abrupt quadrupling of CO2 (abrupt4xCO2) with reduced shortwave radiation successfully moderates annually averaged Arctic temperature rise to about 1°C, with modest changes in seasonal sea ice cycle compared with the preindustrial control simulations (piControl). Changes in summer and autumn sea ice extent are spatially correlated with temperature patterns but much less in winter and spring seasons. However, there are changes of ±20% in sea ice concentration in all seasons, and these will induce changes in atmospheric circulation patterns. In summer and autumn, the models consistently simulate less sea ice relative to preindustrial simulations in the Beaufort, Chukchi, East Siberian, and Laptev Seas, and some models show increased sea ice in the Barents/Kara Seas region. Sea ice extent increases in the Greenland Sea, particularly in winter and spring and is to some extent associated with changed sea ice drift. Decreased sea ice cover in winter and spring in the Barents Sea is associated with increased cyclonic activity entering this area under G1. In comparison, the abrupt4xCO2 experiment shows almost total sea ice loss in September and strong correlation with regional temperatures in all seasons consistent with open ocean conditions. The tropospheric circulation displays a Pacific North America pattern-like anomaly with negative phase in G1-piControl and positive phase under abrupt4xCO2-piControl.

Description: Sea level variations prior to the launch of satellite altimeters are estimated by analyzing historic tide gauge records. Recently, a number of groups have reconstructed sea level by applying EOF techniques to fill missing observations. We complement this study with alternative methods. In a first step gaps in 178 records of sea level change are filled using the pattern recognition capabilities of artificial neural networks. Afterward satellite altimetry is used to extrapolate local sea level change to global fields. Patterns of sea level change are compared to prior studies. Global mean sea level change since 1900 is found to be inline image on average. Local trends are essentially positive with the highest values found in the western tropical Pacific and in the Indian Ocean east of Madagascar where it reaches about inline image. Regions with negative trends are spotty with a minimum value of about inline image south of the Aleutian Islands. Although the acceleration found for the global mean, inline image, is not significant, local values range from inline image in the central Indian Ocean to inline image in the western tropical Pacific and east of Japan. These extrema are associated with patterns of sea level change that differ significantly from the first half of the analyzed period (i.e., 1900–1950) to the second half (1950–2000). We take this as an indication of long period oceanic processes that are superimposed to the general sea level rise.

Description: Geochemical evidence from boreholes suggests enhanced transport of Northern Component Water (NCW) to southern latitudes from about 6 Ma onwards. However, information on how this change in transport influenced the intensity and position of current systems is sparse. Here we use seismic reflection profiles interpreted together with bathymetric data to investigate current derived deposits at the central Argentine Margin. Upslope migrating mudwaves overlying a late Miocene erosional unconformity provide evidence that Circumpolar Deepwater (CDW) flow slowed down with the onset of NCW inflow. During the last ~3 Ma changes in dimensions and migration rates of the waves are small indicating continuous bottom current flow conditions similar to today with only minor variations in flow speed, suggesting that the Deep Western Boundary Current (DWBC) in the western south Atlantic as observed today, has been a pervasive feature of the global thermohaline circulation system during the Plio-/Pleistocene.

Description: The response of the oceanic circulation to mesoscale atmospheric forcing is studied by comparing integrations of a global sea ice-ocean model with high-resolution European Centre for Medium-Range Weather Forecasts analysis data (0.4◦) to those with the same forcing coarse grained to a resolution typically employed in climate models and atmospheric reanalyses (1.8◦). It is shown that the representation of mesoscale features in atmospheric forcing fields leads to an increase in the strength of the wind-driven gyres in the North Atlantic and North Pacific regions of about 5–10% of its mean value. An increase of similar magnitude is found for the Atlantic meridional overturning circulation. From the results of this study it is argued that small-scale atmospheric phenomena such as fronts, mesoscale cyclones, and topographic jets play an important role in driving the mean oceanic circulation.

Description: Concentrations of dissolved inorganic carbon (DIC), total alkalinity (TA), nutrients, and oxygen in subsurface waters of the central Arctic Ocean have been investigated for conceivable time trends over the last two decades. Data from six cruises (1991–2011) that cover the Nansen, Amundsen, and Makarov Basins were included in this analysis. In waters deeper than 2000 m, no statistically significant trend could be observed for DIC, TA, phosphate, or nitrate, but a small rate of increase in apparent oxygen utilization (AOU) was noticeable. For the individual stations, differences in concentration of each property were computed between the mean concentrations in the Arctic Atlantic Water (AAW) or the upper Polar Deep Water (uPDW), i.e., between about 150 and 1400 m depth, and in the deep water (assumed invariable over time). In these shallower water layers, we observe significant above-zero time trends for DIC, in the range of 0.6–0.9 µmol kg-1 yr-1 (for AAW) and 0.4–0.6 µmol kg-1 yr-1 (for uPDW). No time trend in nutrients could be observed, indicating no change in the rate of organic matter mineralization within this depth range. Consequently, the buildup of DIC is attributed to increasing concentrations of anthropogenic carbon in the waters flowing into these depth layers of the Arctic Ocean. The resulting rate of increase of the column inventory of anthropogenic CO2 is estimated to be between 0.6 and 0.9 mol C m-2 yr-1, with distinct differences between basins.

Description: Forecast experiments with the European Centre for Medium-Range Weather Forecasts model with and without relaxation of the Arctic troposphere toward reanalysis data are carried out in order to explore the influence that improved Arctic forecasts during wintertime would have on the skill of medium-range and extended-range prediction of 500 hPa geopotential height in the Northern Hemisphere midlatitudes. It turns out that the largest midlatitude improvements are found over eastern Europe, northern Asia, and North America; no discernible impact is found over the North Atlantic and North Pacific, where midlatitude and tropical dynamics appear to be more important. The strength of the linkage between the Arctic and the midlatitudes is found to be flow dependent, with anomalous northerly wind leading to a stronger Arctic influence. Finally, the results are discussed in the context of the possible impact of Arctic sea ice decline on midlatitude weather and climate.

Description: The results of numerical simulations of the Eltanin impact are combined with the available geological data in order to reconstruct the impact dynamics and to get some constraints on the impact parameters. Numerical simulations show that the Eltanin projectile size should be less than 2 km for a 45° oblique impact and less than 1.5 km for a vertical impact. On the other hand, we demonstrate that the projectile diameter cannot be considerably smaller than 1 km; otherwise, the impact-induced water flow cannot transport eroded sediments across large distances. The maximum displacement approximately equals the water crater radius and rapidly decreases with increasing distances. Numerical simulations also show that ejecta deposits strongly depend on impact angle and projectile size and, therefore, cannot be used for reliable estimates of the initial projectile mass. The initial amplitudes of tsunami-like waves are estimated. The presence of clay-rich sediments, typical for the abyssal basins in cores PS2709 and PS2708 on the Freeden Seamounts (Bellingshausen Sea, Southern Ocean) combined with numerical data allow us to suggest a probable point of impact to the east of the seamounts. The results do not exclude the possibility that a crater in the ocean bottom may exist, but such a structure has not been found yet

Description: Sedimentary proxies used to reconstructmarine productivity suffer fromvariable preservation and are sensitive to factors other than productivity. Therefore, proxy calibration is warranted. Here we map the spatial patterns of two paleoproductivity proxies, biogenic opal and barium fluxes, from a set of core-top sediments recovered in the Subarctic North Pacific. Comparisons of the proxy data with independent estimates of primary and export production, surface water macronutrient concentrations, and biological pCO2 drawdown indicate that neither proxy shows a significant correlation with primary or export productivity for the entire region. Biogenic opal fluxes, when corrected for preservation using 230Th-normalized accumulation rates, show a good correlation with primary productivity along the volcanic arcs (τ =0.71, p = 0.0024) and with export productivity throughout the western Subarctic North Pacific (τ = 0.71, p = 0.0107). Moderate and good correlations of biogenic barium flux with export production (τ = 0.57, p = 0.0022) and with surface water silicate concentrations (τ =0.70, p = 0.0002) are observed for the central and eastern Subarctic North Pacific. For reasons unknown, however, no correlation is found in the western Subarctic North Pacific between biogenic barium flux and the reference data. Nonetheless, we show that barite saturation, uncertainty in the lithogenic barium corrections, and problems with the reference data sets are not responsible for the lack of a significant correlation between biogenic barium flux and the reference data. Further studies evaluating the factors controlling the variability of the biogenic constituents in the sediments are desirable in this region.

Description: Recent models of South Atlantic opening history focus on early plate divergence by incorporating intracontinental deformation, which is poorly constrained. Aiming to avoid the uncertainties in this approach, we model the entire divergence history with a joint inversion for seafloor spreading data. For this history, the pre-Campanian motion parameters are the first to feature formal uncertainty estimates. We date the onset of spreading at 138 Ma, with movement along intracontinental accommodation zones leading to the assembly of South America by 123 Ma and Africa by 106 Ma. Part of the ridge in the Agulhas Basin jumped westward soon afterward toward the Bouvet plume, initiating the motion of a short-lived Malvinas Plate. The NE Georgia and Maud rises and Agulhas Plateau formed as a large igneous province over the plume. Farther north, part of the ridge jumped eastward toward the Tristan plume around 94–93 Ma but seems not to have resulted in independent plate motion. Our results show that the South Atlantic grew by diachronous breakup of continents on just two plates. Cretaceous intracontinental deformation in South America and Africa can be interpreted in terms of the accommodation of stress associated with northward propagation of this process. The pattern of accommodation is usually envisaged as focusing all of the strain in narrow belts. With our rotations, a commonly used set of such belts accounts instead for just 42–67% of the implied total strain. We suggest that the remainder was accommodated at all scales within the continental interiors and the extended continental margins.

Description: Freshwater in the Arctic Ocean plays an important role in the regional ocean circulation, sea ice, and global climate. From salinity observed by a variety of platforms, we are able, for the first time, to estimate a statistically reliable liquid freshwater trend from monthly gridded fields over all upper Arctic Ocean basins. From 1992 to 2012 this trend was 600 ± 300 km3 yr−1. A numerical model agrees very well with the observed freshwater changes. A decrease in salinity made up about two thirds of the freshwater trend and a thickening of the upper layer up to one third. The Arctic Ocean Oscillation index, a measure for the regional wind stress curl, correlated well with our freshwater time series. No clear relation to Arctic Oscillation or Arctic Dipole indices could be found. Following other observational studies, an increased Bering Strait freshwater import to the Arctic Ocean, a decreased Davis Strait export, and enhanced net sea ice melt could have played an important role in the freshwater trend we observed.

Description: The large-scale boreal winter climatic patterns associated with interannual variability in a coral oxygen isotope (δ18O) record from the southern Red Sea (Klein et al. [1997]) covering most of the last century are investigated. From the early 1930’s to the early 1960’s, the winter coral δ18O record, reflecting temperature and salinity variations in southern Red Sea surface waters, is associated with global (or large scale) sea surface temperature (SST) and 850mb geopotential height (Z850) anomalies which project on the corresponding patterns associated with the El Niño-Southern Oscillation (ENSO). In contrast, since the early 1960’s the winter coral δ18O record is related to a Z850 pattern that reflects the ENSO-independent part of the East Asian Winter Monsoon (EAWM), which includes the Siberian High, the East Asian through and the East Asian upper-tropospheric Jet. Our results indicate a weakening of the ENSO control on interannual temperature/salinity variations in southern Red Sea surface waters in the early 1960’s, due to the warming of the Indian Ocean, and suggest that information about the non-stationarity in the relationship between ENSO and two distinct modes of EAWM can be documented in southern Red Sea coral δ18O records.

Description: Die ursprünglich marine und auch heute noch vorwiegend im Meer lebende Crustaceen-Gruppe der Decapoda hat es im Laufe ihrer Evolution geschafft, auch festes Land sowie Süßwasser zu besiedeln. Den mit diesen Lebensräumen verbundenen Stressfaktoren konnten die langlebigen Juvenil- und Erwachsenen-Stadien mit strukturellen und physiologischen Anpassungen entgegengewirken. Sehr viel schwächer ausgeprägt ist die evolutive Anpassungsfähigkeit der ursprünglich planktischen, physiologisch empfindlichen und von planktischer Nahrung abhängigen Larven-Stadien. Terrestrische und limnische Dekapoden haben verschiedene “Export-Strategien” entwickelt, die auf ausgeprägten Wanderungen der erwachsenen Weibchen und/oder des ersten Larvenstadiums beruhen und auf eine Stressvermeidung in der Larvalphase hinzielen. Um die Larvalentwicklung ganz im Süßwasser vollenden zu können, müssen schon in frühen Entwicklungsstadien spezielle Strukturen und physiologische Funktionen ausgebildet werden, die der Aufrechterhaltung der osmotischen Homöostase durch Osmoregulation sowie einer Unabhängigkeit von planktischer Nahrung dienen. Decapod Crustaceans, which are by origin a marine group that still occurs mainly in the sea, invaded during their evolution also firm land and freshwater habitats. Stress factors associated with those non-marine environments have successfully been countervailed by long-lived benthic juvenile and adult life-history stages, which were able to evolve structural and physiological adaptations. By contrast, the adaptability of the short-lived planktonic larval stages has been much weaker, remaining physiologically fragile and mostly dependant on planktonic food sources. Terrestrial as well as limnic decapods have evolved various ”export strategies" based on extended migrations. These are performed by the adult females and/or the first larval stage, being aimed at an avoidance of stress conditions during the larval phase. In order to successfully complete the larval phase in freshwater, already the earliest developmental stages must express special structures and physiological functions aiding to the maintenance of osmotic homeostasis and to an independance from planktonic food sources.

Description: The temperature variability simulated by climate models is generally consistent with that observed in instrumental records at the scale of global averages, but further insight can also be obtained from regional analysis of the marine temperature record. A protocol is developed for comparing model simulations to observations that account for observational noise and missing data. General consistency between Coupled Model Intercomparison Project Phase 5 model simulations and regional sea surface temperature variability is demonstrated at interannual timescales. At interdecadal timescales, however, the variability diagnosed from observations is significantly greater. Discrepancies are greatest at low latitudes, with none of the 41 models showing equal or greater interdecadal variability. The pattern of suppressed variability at longer timescales and smaller spatial scales appears consistent with models generally being too diffusive. Suppressed variability of low-latitude marine temperatures points to underestimation of intrinsic variability and may help explain why few models reproduce the observed temperature trends during the last 15 years.

Description: Air-sea gas exchange plays a key role in the cycling of greenhouse and other biogeochemically important gases. Although air-sea gas transfer is expected to change as a consequence of the rapid decline in summer Arctic sea ice cover, little is known about the effect of sea-ice cover on gas exchange fluxes, especially in the marginal ice zone. During the Polarstern expedition ARK-XXVI/3 (TransArc, Aug/Sep 2011) to the central Arctic Ocean, we compared 222Rn/226Ra ratios in the upper 50m of 14 ice-covered and 4 ice-free stations. At three of the ice-free stations, we find 222Rn-based gas transfer coefficients in good agreement with expectation based on published relationships between gas transfer and wind speed over open water when accounting for wind history from wind reanalysis data. We hypothesize that the low gas transfer rate at the fourth station results from reduced fetch due to the proximity of the ice edge, or lateral exchange across the front at the ice edge by restratification. No significant radon deficit could be observed at the ice-covered stations. At these stations, the average gas transfer velocity was less than 0.1 m/d (97.5% confidence), compared to 0.5-2.2 m/d expected for open water. Our results show that air-sea gas exchange in an ice-covered ocean is reduced by at least an order of magnitude compared to open water. In contrast to previous studies, we show that in partially ice-covered regions, gas exchange is lower than expected based on a linear scaling to percent ice cover.

Description: Two parameterizations of turbulent boundary layer processes at the interface between an ice shelf and the ocean beneath are investigated in terms of their impact on simulated melt rates and feedbacks. The parameterizations differ in the transfer coefficients for heat and freshwater fluxes. In their simplest form, they are assumed constant and hence are independent of the velocity of ocean currents at the ice shelf base. An augmented melt rate parameterization accounts for frictional turbulence via transfer coefficients that do depend on boundary layer current velocities via a drag law. In simulations with both parameterizations for idealized as well as realistic cavity geometries under Pine Island Ice Shelf, West Antarctica, significant differences in melt rate patterns between the velocity-independent and velocity-dependent formulations are found. While patterns are strongly correlated to those of thermal forcing for velocity-independent transfer coefficients, melting in the case of velocity-dependent coefficients is collocated with regions of high boundary layer currents, in particular where rapid plume outflow occurs. Both positive and negative feedbacks between melt rates, boundary layer temperature, velocities, and buoyancy fluxes are identified. Melt rates are found to increase with increasing drag coefficient inline image, in agreement with plume model simulations, but optimal values of Cd inferred from plume models are not easily transferable. Uncertainties therefore remain, both regarding simulated melt rate spatial distributions and magnitudes.

Description: A critical question regarding the organic carbon cycle in the Arctic Ocean is whether the decline in ice extent and thickness and the associated increase in solar irradiance in the upper ocean will result in increased primary production and particulate organic carbon (POC) export. To assess spatial and temporal variability in POC export, under-ice export fluxes were measured with short-term sediment traps in the northern Laptev Sea in July-August-September 1995, north of the Fram Strait in July 1997, and in the Central Arctic in August–September 2012. Sediment traps were deployed at 2–5 m and 20–25 m under ice for periods ranging from 8.5 to 71 h. In addition to POC fluxes, total particulate matter, chlorophyll a, biogenic particulate silica, phytoplankton, and zooplankton fecal pellet fluxes were measured to evaluate the amount and composition of the material exported in the upper Arctic Ocean. Whereas elevated export fluxes observed on and near the Laptev Sea shelf were likely the combined result of high primary production, resuspension, and release of particulate matter from melting ice, low export fluxes above the central basins despite increased light availability during the record minimum ice extent of 2012 suggest that POC export was limited by nutrient supply during summer. These results suggest that the ongoing decline in ice cover affects export fluxes differently on Arctic shelves and over the deep Arctic Ocean and that POC export is likely to remain low above the central basins unless additional nutrients are supplied to surface waters.

Description: While wave heights globally have been growing over recent decades, observations of their regional trends vary. Simulations of future wave climate can be achieved by coupling wave and climate models. At present, wave heights and their future trends in the Arctic Ocean remain unknown. We use the third-generation wave forecast model WAVEWATCH-III forced by winds and sea ice concentration produced within the regional model HIRHAM, under the anthropogenic scenario SRES-A1B. We find that significant wave height and its extremes will increase over different inner Arctic areas due to reduction of sea ice cover and regional wind intensification in the 21st century. The opposite tendency, with a slight reduction in wave height appears for the Atlantic sector and the Barents Sea. Our results demonstrate the complex wave response in the Arctic Ocean to a combined effect of wind and sea ice forcings in a climate-change scenario during the 21st

Description: Assessment of marine downscaling of global model simulations to the regional scale is a prerequisite for understanding ocean feedback to the atmosphere in regional climate downscaling. Major difficulties arise from the coarse grid resolution of global models, which cannot provide sufficiently accurate boundary values for the regional model. In this study, we first setup a stretched global model (MPIOM) to focus on the North Sea by shifting poles. Second, a regional model (HAMSOM) was performed with higher resolution, while the open boundary values were provided by the stretched global model. In general, the sea surface temperatures (SSTs) in the two experiments are similar. Major SST differences are found in coastal regions (root mean square difference of SST is reaching up to 2°C). The higher sea surface salinity in coastal regions in the global model indicates the general limitation of this global model and its configuration (surface layer thickness is 16 m). By comparison, the advantage of the absence of open lateral boundaries in the global model can be demonstrated, in particular for the transition region between the North Sea and Baltic Sea. On long timescales, the North Atlantic Current (NAC) inflow through the northern boundary correlates well between both model simulations (R~0.9). After downscaling with HAMSOM, the NAC inflow through the northern boundary decreases by ~10%, but the circulation in the Skagerrak is stronger in HAMSOM. The circulation patterns of both models are similar in the northern North Sea. The comparison suggests that the stretched global model system is a suitable tool for long-term free climate model simulations, and the only limitations occur in coastal regions. Regarding the regional studies focusing on the coastal zone, nested regional model can be a helpful alternative.

Description: The horizontal and vertical circulation of the Weddell Gyre is diagnosed using a box inverse model constructed with recent hydrographic sections and including mobile sea ice and eddy transports. The gyre is found to convey 42 +/- 8 Sv (1 Sv = 10^6 m3 s–1) across the central Weddell Sea and to intensify to 54 +/- 15 Sv further offshore. This circulation injects 36 +/- 13 TW of heat from the Antarctic Circumpolar Current to the gyre, and exports 51 +/- 23 mSv of freshwater, including 13 +/- 1 mSv as sea ice to the midlatitude Southern Ocean. The gyre’s overturning circulation has an asymmetric double-cell structure, in which 13 +/- 4 Sv of Circumpolar Deep Water (CDW) and relatively light Antarctic Bottom Water (AABW) are transformed into upper-ocean water masses by midgyre upwelling (at a rate of 2 +/- 2 Sv) and into denser AABW by downwelling focussed at the western boundary (8 +/- 2 Sv). The gyre circulation exhibits a substantial throughflow component, by which CDW and AABW enter the gyre from the Indian sector, undergo ventilation and densification within the gyre, and are exported to the South Atlantic across the gyre’s northern rim. The relatively modest net production of AABW in the Weddell Gyre (6 +/- 2 Sv) suggests that the gyre’s prominence in the closure of the lower limb of global oceanic overturning stems largely from the recycling and equatorward export of Indian-sourced AABW.

Description: We present a new, high resolution (300 m) bathymetric grid of the continental shelf surrounding the South Orkney Islands, northeast of the Antarctic Peninsula. The new grid, derived from a compilation of marine echo-sounding data, improves previous regional bathymetric representations and helps to visualize the morphology of the shelf in unrivalled detail. The compilation forms important baseline information for a range of scientific applications and end users including oceanographers, glacial modelers, biologists, and geologists. In particular, due to the limited understanding of glacial history in this region, the bathymetry provides the first detailed insights into past glacial regimes. The continental shelf is dominated by seven glacially eroded troughs, marking the pathways of glacial outlets that once drained a former ice cap centered on the South Orkney Islands. During previous glacial periods, grounded ice extended to the shelf edge north of the islands. A large, ∼250 km long sediment depocenter, interpreted as a maximum former ice limit of one or more Cenozoic glaciations, suggests that ice was only grounded to the ∼300–350 m contour in the south. Hypsometric analyses support this interpretation, indicating that a significant proportion of the shelf has been unaffected by glacial erosion. Using these observations, we propose a preliminary ice cap reconstruction for maximum glaciation of the South Orkney plateau, suggesting an ice coverage of about ∼19,000 km2. The timing of maximum ice extent, number of past advances and pattern of subsequent deglaciation(s) remain uncertain and will require further targeted marine geological and geophysical investigations to resolve.

Description: Paleo data have been frequently used to determine the equilibrium (Charney) climate sensitivity Sa, and—if slow feedback processes (e.g., land-ice albedo) are adequately taken into account—they indicate a similar range as estimates based on instrumental data and climate model results. Many studies assume the (fast) feedback processes to be independent of the background climate state, e.g., equally strong during warm and cold periods. Here we assess the dependency of the fast feedback processes on the background climate state using data of the last 800 kyr and a box model of the climate system for interpretation. Applying a new method to account for background state dependency, we find Sa=0.61±0.07 K (W m−2)−1(±1σ) using a reconstruction of Last Glacial Maximum (LGM) cooling of −4.0 K and significantly lower climate sensitivity during glacial climates. Due to uncertainties in reconstructing the LGM temperature anomaly, Sa is estimated in the range Sa = 0.54–0.95 K (W m−2)−1.

Description: In multibeam echosounder and sub-bottom profiler data acquired during RV Polarstern cruise ARK-VII/3a from the Hovgaard Ridge (Fram Strait), we found evidence for very deep (〉1200 m) iceberg scouring. Five elongated seafloor features have been detected that are interpreted to be iceberg scours. The scours are oriented in north-south/south-north direction and are about 15 m deep, 300 m wide, and 4 km long crossing the entire width of the ridge. They are attributed to multiple giant palaeo-icebergs that most probably left the Arctic Ocean southward through Fram Strait. The huge keel-depths are indicative of ice sheets extending into the Arctic Ocean being at least 1200 m thick at the calving front during glacial maxima. The deep St Anna Trough or grounded ice observed at the East Siberian Continental Margin are likely source regions of these icebergs that delivered freshwater to the Nordic Seas.

Description: Magnetic anomaly identifications underpin plate tectonic reconstructions and form the primary dataset from which age of the oceanic lithosphere and seafloor spreading regimes in the ocean basins can be determined. Although these identifications are an invaluable resource, their usefulness to the wider scientific community has been limited due to the lack of a central community infrastructure to organize, host and update these interpretations. We have developed an open-source, community-driven online infrastructure as a repository for quality-checked magnetic anomaly identifications from all ocean basins. We provide a global sample dataset that comprises 96,733 individually picked magnetic anomaly identifications organized by ocean basin and publication reference, and provide accompanying Hellinger-format files, where available. Our infrastructure is designed to facilitate research in plate tectonic reconstructions or research that relies on an assessment of plate reconstructions, for both experts and non-experts alike. To further enhance the existing repository and strengthen its value, we encourage others in the community to contribute to this effort.

Description: In this paper we pose the question where the source regions of the aerosol which occurs in the European Arctic are located. Long-term aerosol optical depth (AOD) data from Ny-Alesund and Sodankylä as well as short data from a campaign on a Russian drifting station were analysed by air backtrajectories, analysis of the general circulation pattern and a correlation to chemical composition from in-situ measurements. Surprisingly our data clearly shows that direct transport of pollutants from Europe does not play an important role. Instead, Arctic haze in Ny-AAlesund has been found for air masses from the Eastern Arctic, while events with increased AOD but chemically more diverse composition have been found for air from Siberia or the central Arctic. Moreover, the AOD in Ny-AAlesund does not depend on the North Atlantic Oszillation (NAO). Hence, either the pollution pathways of aerosol are more complex or aerosol is significantly altered by clouds.

Description: Radiative transfer in sea ice is subject to anisotropic, multiple scattering. The impact of anisotropy on the light field under sea ice was found to be substantial and has been quantified. In this study, a large data set of irradiance and radiance measurements under sea ice has been acquired with a Remotely Operated Vehicle (ROV) in the central Arctic. Measurements are interpreted in the context of numerical radiative transfer calculations, laboratory experiments, and microstructure analysis. The ratio of synchronous measurements of transmitted irradiance to radiance shows a clear deviation from an isotropic under-ice light field. We find that the angular radiance distribution under sea ice is more downward directed than expected for an isotropic light field. This effect can be attributed to the anisotropic scattering coefficient within sea ice. Assuming an isotropic radiance distribution under sea ice leads to significant errors in light-field modeling and the interpretation of radiation measurements. Quantification of the light field geometry is crucial for correct conversion of radiance data acquired by Autonomous Underwater Vehicles (AUVs) and ROVs.

Description: Es gibt viele geologische Hinweise darauf, dass die Erde vor etwa 850 bis 635 Millionen Jahren phasenweise fast vollständig mit Eis bedeckt war. In einer solchen Klimaphase schirmte ein dicker Eispanzer den Ozean von den Einflüssen der Atmosphäre ab. Trotzdem konnte sich, angetrieben von Geothermie am Ozeanboden, eine ganz besondere Ozeanzirkulation entwickeln. Ihre Charakteristika unterscheiden sich deutlich von der heutigen Zirkulation. Sie könnte das Überleben von damaligen Mikroben- und Algenpopulationen in eisfreien Küstenoasen gewährleistet haben.

Description: Sea ice and snow on sea ice to a large extent determine the surface heat budget in the Arctic Ocean. In spite of the advances in modeling sea-ice thermodynamics, a good number of models still rely on simple parameterizations of the thermodynamics of ice and snow. Based on simulations with an Arctic sea-ice model coupled to an ocean general circulation model, we analyzed the impact of changing two sea-ice parameterizations: (1) the prescribed ice thickness distribution (ITD) for surface heat budget calculations, and (2) the description of the snow layer. For the former, we prescribed a realistic ITD derived from airborne electromagnetic induction sounding measurements. For the latter, two different types of parameterizations were tested: (1) snow thickness independent of the sea-ice thickness below, and (2) a distribution proportional to the prescribed ITD. Our results show that changing the ITD from seven uniform categories to fifteen nonuniform categories derived from field measurements, and distributing the snow layer according to the ITD, leads to an increase in average Arctic-wide ice thickness by 0.56 m and an increase by 1 m in the Canadian Arctic Archipelago and Canadian Basin. This increase is found to be a direct consequence of 524 km3 extra thermodynamic growth during the months of ice formation (January, February, and March). Our results emphasize that these parameterizations are a key factor in sea-ice modeling to improve the representation of the sea-ice energy balance.

Description: UV-laser-based microscopic systems were utilized to dissect and sample organic tissue for stable isotope measurements from thin wood cross-sections. We tested UV-laser-based microscopic tissue dissection in practice for high-resolution isotopic analyses (δ13C/δ18O) on thin cross-sections from different tree species. The method allows serial isolation of tissue of any shape and from millimetre down to micrometre scales. On-screen pre-defined areas of interest were automatically dissected and collected for mass spectrometric analysis. Three examples of high-resolution isotopic analyses revealed that: in comparison to δ13C of xylem cells, woody ray parenchyma of deciduous trees have the same year-to-year variability, but reveal offsets that are opposite in sign depending on whether wholewood or cellulose is considered; high-resolution tree-ring δ18O profiles of Indonesian teak reflect monsoonal rainfall patterns and are sensitive to rainfall extremes caused by ENSO; and seasonal moisture signals in intra-tree-ring δ18O of white pine are weighted by nonlinear intra-annual growth dynamics. The applications demonstrate that the use of UV-laser-based microscopic dissection allows for sampling plant tissue at ultrahigh resolution and unprecedented precision. This new technique facilitates sampling for stable isotope analysis of anatomical plant traits like combined tree eco-physiological, wood anatomical and dendroclimatological studies.

Description: As the Arctic coast erodes, it drains thermokarst lakes, transforming them into lagoons and, eventually, integrates them into subsea permafrost. Lagoons represent the first stage of a thermokarst lake transition to a marine setting and possibly more saline and colder upper boundary conditions. In this research, borehole data, electrical resistivity surveying, and modelling of heat and salt diffusion were carried out at Polar Fox Lagoon on the Bykovsky Peninsula, Siberia. Polar Fox Lagoon is a seasonally isolated water body connected to Tiksi Bay through a channel, leading to hypersaline waters under the ice cover. The boreholes in the centre of the lagoon revealed floating ice and a saline cryotic bed underlain by a saline cryotic talik, a thin ice‐bearing permafrost layer, and unfrozen ground. The bathymetry showed that most of the lagoon was ice‐grounded in spring. In bedfast ice areas, the electrical resistivity profiles suggest that an unfrozen saline layer was underlain by a thick layer of refrozen talik. The modelling suggests thermokarst lake taliks refreeze when submerged in saltwater with mean annual bottom water temperatures below or slightly above 0 °C. This occurs, because the top‐down chemical degradation of newly formed ice‐bearing permafrost is slower than the cooling of the talik. Hence, lagoons may pre‐condition taliks with a layer of ice‐bearing permafrost before encroachment by the sea and this frozen layer may act as a cap on gas migration out of the underlying talik.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Romagnoni, G., Kvile, K. o., Dagestad, K., Eikeset, A. M., Kristiansen, T., Stenseth, N. C., & Langangen, O. Influence of larval transport and temperature on recruitment dynamics of North Sea cod (Gadus morhua) across spatial scales of observation. Fisheries Oceanography, (2020): 1-16, doi:10.1111/fog.12474.

Description: The survival of fish eggs and larvae, and therefore recruitment success, can be critically affected by transport in ocean currents. Combining a model of early‐life stage dispersal with statistical stock–recruitment models, we investigated the role of larval transport for recruitment variability across spatial scales for the population complex of North Sea cod (Gadus morhua ). By using a coupled physical–biological model, we estimated the egg and larval transport over a 44‐year period. The oceanographic component of the model, capable of capturing the interannual variability of temperature and ocean current patterns, was coupled to the biological component, an individual‐based model (IBM) that simulated the cod eggs and larvae development and mortality. This study proposes a novel method to account for larval transport and success in stock–recruitment models: weighting the spawning stock biomass by retention rate and, in the case of multiple populations, their connectivity. Our method provides an estimate of the stock biomass contributing to recruitment and the effect of larval transport on recruitment variability. Our results indicate an effect, albeit small, in some populations at the local level. Including transport anomaly as an environmental covariate in traditional stock–recruitment models in turn captures recruitment variability at larger scales. Our study aims to quantify the role of larval transport for recruitment across spatial scales, and disentangle the roles of temperature and larval transport on effective connectivity between populations, thus informing about the potential impacts of climate change on the cod population structure in the North Sea.

Description: G.R. was supported by the Norden Top‐level Research Initiative sub‐programme “Effect Studies and Adaptation to Climate Change” through the Nordic Centre for Research on Marine Ecosystems and Resources under Climate Change (NorMER). K.Ø.K. was supported by the WHOI John H. Steele Post‐doctoral Scholar award and VISTA – a basic research program in collaboration between The Norwegian Academy of Science and Letters, and Equinor. We thank an anonymous referee for valuable comments that substantially improved the article.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Carroll, E. L., Ott, P. H., McMillan, L. F., Galletti Vernazzani, B., Neveceralova, P., Vermeulen, E., Gaggiotti, O. E., Andriolo, A., Baker, C. S., Bamford, C., Best, P., Cabrera, E., Calderan, S., Chirife, A., Fewster, R. M., Flores, P. A. C., Frasier, T., Freitas, T. R. O., Groch, K., Hulva, P., Kennedy, A., Leaper, R., Leslie, M. S., Moore, M., Oliveira, L., Seger, J., Stepien, E. N., Valenzuela, L. O., Zerbini, A., & Jackson, J. A. Genetic diversity and connectivity of southern right whales (Eubalaena australis) found in the Brazil and Chile-Peru wintering grounds and the South Georgia (Islas Georgias del Sur) feeding ground. Journal of Heredity, 111(3), (2020): 263-276, doi:10.1093/jhered/esaa010.

Description: As species recover from exploitation, continued assessments of connectivity and population structure are warranted to provide information for conservation and management. This is particularly true in species with high dispersal capacity, such as migratory whales, where patterns of connectivity could change rapidly. Here we build on a previous long-term, large-scale collaboration on southern right whales (Eubalaena australis) to combine new (nnew) and published (npub) mitochondrial (mtDNA) and microsatellite genetic data from all major wintering grounds and, uniquely, the South Georgia (Islas Georgias del Sur: SG) feeding grounds. Specifically, we include data from Argentina (npub mtDNA/microsatellite = 208/46), Brazil (nnew mtDNA/microsatellite = 50/50), South Africa (nnew mtDNA/microsatellite = 66/77, npub mtDNA/microsatellite = 350/47), Chile–Peru (nnew mtDNA/microsatellite = 1/1), the Indo-Pacific (npub mtDNA/microsatellite = 769/126), and SG (npub mtDNA/microsatellite = 8/0, nnew mtDNA/microsatellite = 3/11) to investigate the position of previously unstudied habitats in the migratory network: Brazil, SG, and Chile–Peru. These new genetic data show connectivity between Brazil and Argentina, exemplified by weak genetic differentiation and the movement of 1 genetically identified individual between the South American grounds. The single sample from Chile–Peru had an mtDNA haplotype previously only observed in the Indo-Pacific and had a nuclear genotype that appeared admixed between the Indo-Pacific and South Atlantic, based on genetic clustering and assignment algorithms. The SG samples were clearly South Atlantic and were more similar to the South American than the South African wintering grounds. This study highlights how international collaborations are critical to provide context for emerging or recovering regions, like the SG feeding ground, as well as those that remain critically endangered, such as Chile–Peru.

Description: This work was supported by the EU BEST 2.0 medium grant 1594 and UK DARWIN PLUS grant 057 and additional funding from the World Wildlife Fund GB107301. The collection of the Chile–Peru sample was supported by the Global Greengrants Fund and the Pacific Whale Foundation. The collection of the Brazilian samples was supported through grants by the Brazilian National Research Council to Paulo H. Ott (CNPq proc. n° 144064/98-7) and Paulo A.C. Flores (CNPq proc. n° 146609/1999-9) and with support from the World Wildlife Fund (WWF-Brazil). The collection of the South African samples was supported by the Global Greengrants Fund, the Pacific Whale Foundation and Charles University Grant Agency (1140217). E.L.C. was partially supported by a Rutherford Discovery Fellowship from the Royal Society of New Zealand. This study forms part of the Ecosystems component of the British Antarctic Survey Polar Sciences for Planet Earth Programme, funded by the Natural Environment Research Council.

Description: Author Posting. © The Authors, 2014. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 197 (2014): 697-704, doi:10.1093/gji/ggu048.

Description: After the 1960 M9.5 Valdivia, Chile earthquake, three types of geodetic observations were made during four time periods at nearby locations. These post-seismic observations were previously explained by post-seismic afterslip on the downdip extension of the 1960 rupture plane. In this study, we demonstrate that the post-seismic observations can be explained alternatively by volumetric viscoelastic relaxation of the asthenosphere mantle. In searching for the best-fitting viscosity model, we invert for two variables, the thickness of the elastic lithosphere, He, and the effective Maxwell decay time of the asthenosphere mantle, TM, assuming a 100-km-thick asthenosphere mantle. The best solutions to fit the observations in four sequential time periods, 1960–1964, 1960–1968, 1965–1973 and 1980–2010, each yield a similar He value of about 65 km but significantly increasing TM values of 0.7, 6, 10 and 80 yr, respectively. We calculate the corresponding viscoelastic Coulomb stress increase since 1960 on the future rupture plane of the 2010 M8.8 Maule, Chile earthquake. The calculated viscoelastic stress increase on the 2010 rupture plane varies gradually from 13.1 bars at the southern end to 0.1 bars at the northern end. In contrast, the stress increase caused by an afterslip model has a similar spatial distribution but slightly smaller values of 0.1–3.2 bars on the 2010 rupture plane.

Description: This work was supported by a MIT/WHOI Joint Program Student Fellowship and a Graduate Student Fellowship from the WHOI Deep Ocean Exploration Institute (MD), as well as NSF Grant OCE-1141785 and a Deerbrook Foundation Award (JL).

Description: The Arctic sea ice cover is rapidly shrinking, but a direct, longer-term assessment of the ice thinning remains challenging. A new time series constructed from in situ measurements of sea ice thickness at the end of the melt season in Fram Strait shows a thinning by over 50% during 2003-2012. The modal and mean ice thickness along 79 degrees N decreased at a rate of 0.3 and 0.2 m yr(-1), respectively, with long-term averages of 2.5 and 3 m. Airborne observations reveal an east-west thickness gradient across the strait in spring but not in summer due to advection from more different source regions. There is no clear relationship between interannual ice thickness variability and the source regions of the ice. The observed thinning is therefore likely a result of Arctic-wide reduction in ice thickness with a potential shift in exported ice types playing a minor role.

Description: In the vast Low Nutrient Low-Chlorophyll (LNLC) Ocean, the vertical nutrient supply from the subsurface to the sunlit surface waters is low, and atmospheric contribution of nutrients may be one order of magnitude greater over short timescales. The short turnover time of atmospheric Fe and N supply (〈1 month for nitrate) further supports deposition being an important source of nutrients in LNLC regions. Yet, the extent to which atmospheric inputs are impacting biological activity and modifying the carbon balance in oligotrophic environments has not been constrained. Here, we quantify and compare the biogeochemical impacts of atmospheric deposition in LNLC regions using both a compilation of experimental data and model outputs. A metadata-analysis of recently conducted field and laboratory bioassay experiments reveals complex responses, and the overall impact is not a simple “fertilization effect of increasing phytoplankton biomass” as observed in HNLC regions. Although phytoplankton growth may be enhanced, increases in bacterial activity and respiration result in weakening of biological carbon sequestration. The application of models using climatological or time-averaged non-synoptic deposition rates produced responses that were generally much lower than observed in the bioassay experiments. We demonstrate that experimental data and model outputs show better agreement on short timescale (days to weeks) when strong synoptic pulse of aerosols deposition, similar in magnitude to those observed in the field and introduced in bioassay experiments, is superimposed over the mean atmospheric deposition fields. These results suggest that atmospheric impacts in LNLC regions have been underestimated by models, at least at daily to weekly timescales, as they typically overlook large synoptic variations in atmospheric deposition and associated nutrient and particle inputs. Inclusion of the large synoptic variability of atmospheric input, and improved representation and parameterization of key processes that respond to atmospheric deposition, is required to better constrain impacts in ocean biogeochemical models. This is critical for understanding and prediction of current and future functioning of LNLC regions and their contribution to the global carbon cycle.

Description: The dominant modes of blocking frequency variability in the Atlantic-European region are evaluated for the 1871–2010 period. An Empirical Orthogonal Function (EOF) analysis of a two-dimensional blocking indicator field reveals three dominant EOFs, describing about 35% of interannual to multidecadal blocking variability. The first EOF captures an out-of-phase blocking frequency anomaly over Greenland and Western Europe regions. The corresponding principal component time series is strongly correlated with the North Atlantic Oscillation index, but shows also significant correlations with indices of the East Atlantic, Scandinavian and East Atlantic-Western Russia patterns. The second EOF shows a dominant center over the North Sea region as well as a less pronounced center with anomalies of the same sign over southeastern Greenland. The multidecadal variations of this mode of blocking variability are related with a basin wide North Atlantic sea surface temperature anomaly which projects partly on the Atlantic Multidecadal Oscillation (AMO). The third mode is an east–west dipole of blocking frequency anomalies from Scandinavian and southern Greenland regions and shows enhanced variability at ~20 year time scales. The coherent variations of the time coefficients of this pattern with open solar flux suggest a possible solar influence on blocking variability at these time scales. Furthermore the dominant patterns of blocking variability are related with distinct anomaly patterns in the occurrence of extreme low temperature events over Europe at interannual to multidecadal time-scales. AMO as well as the solar signals were detected also in the corresponding extreme low temperature blocking patterns. We argue that multivariate analysis of blocking indicators gives additional information about blocking and related extreme climate phenomena variability and predictability comparative with classical sectorial approach.

Description: Understanding the cooling effect of recent volcanoes is of particular interest in the context of the post-2000 slowing of the rate of global warming. Satellite observations of aerosol optical depth above 15 km have demonstrated that small-magnitude volcanic eruptions substantially perturb incoming solar radiation. Here we use lidar, Aerosol Robotic Network, and balloon-borne observations to provide evidence that currently available satellite databases neglect substantial amounts of volcanic aerosol between the tropopause and 15 km at middle to high latitudes and therefore underestimate total radiative forcing resulting from the recent eruptions. Incorporating these estimates into a simple climate model, we determine the global volcanic aerosol forcing since 2000 to be −0.19 ± 0.09 Wm−2. This translates into an estimated global cooling of 0.05 to 0.12°C. We conclude that recent volcanic events are responsible for more post-2000 cooling than is implied by satellite databases that neglect volcanic aerosol effects below 15 km.

Description: An intercomparison of four low-resolution remotely sensed ice-drift products in the Arctic Ocean is presented. The purpose of the study is to examine the uncertainty in space and time of these different drift products. The comparison is based on monthly mean ice drifts from October 2002 to December 2006. The ice drifts were also compared with available buoy data. The result shows that the differences of the drift vectors are not spatially uniform, but are covariant with ice concentration and thickness. In high (low) ice-concentration areas, the differences are small (large), and in thick (thin) ice-thickness areas, the differences are small (large). A comparison with the drift deduced from buoys reveals that the error of the drift speed depends on the magnitude of the drift speed: larger drift speeds have larger errors. Based on the intercomparison of the products and comparison with buoy data, uncertainties of the monthly mean drift are estimated. The estimated uncertainty maps reasonably reflect the difference between the products in relation to ice concentration and the bias from the buoy drift in relation to drift speed. Examinations of distinctive features of Arctic sea ice motion demonstrate that the transpolar drift speed differs among the products by 13% (0.32 cm s−1) on average, and ice drift curl in the Amerasian Basin differs by up to 24% (3.3 × 104 m2 s−1). These uncertainties should be taken into account if these products are used, particularly for model validation and data assimilation within the Arctic.

Description: The breakup of Gondwana is manifested by coeval early Jurassic Karoo magmatism in South Africa and East Antarctica. In South Africa, the large volumes of volcanic rocks of the adjoining Lebombo and Mwenetzi-Save monoclines represent a volcanic rift margin, and in East Antarctica, a corresponding feature, the Explora Wedge is buried below sediments and floating ice shelves on the continental margin of Dronning Maud Land. We use the seismic vibrator source to explore the sub-ice geology in Antarctica, and the new seismic reflection and available regional aeromagnetic data enable us to outline a dogleg landward extent of the Explora Wedge in Dronning Maud Land. The congruent inboard wedge geometries on the two continents define a high quality constraint, which facilitate for the first time, a geologically consistent and tight reconstruction of Africa relative to East Antarctica within Gondwana. The uncertainties in correlations of major geological features (mobile belts) from one continent to the other may now be of the order of ten’s of kilometers rather than hundreds of kilometers.

Description: The climate during the Cenozoic era changed in several steps from ice-free poles and warm conditions to ice-covered poles and cold conditions. Since the 1950s, a body of information on ice volume and temperature changes has been built up predominantly on the basis of measurements of the oxygen isotopic composition of shells of benthic foraminifera collected from marine sediment cores. The statistical methodology of time series analysis has also evolved, allowing more information to be extracted from these records. Here we provide a comprehensive view of Cenozoic climate evolution by means of a coherent and systematic application of time series analytical tools to each record from a compilation spanning the interval from 4 to 61 Myr ago. We quantitatively describe several prominent features of the oxygen isotope record, taking into account the various sources of uncertainty (including measurement, proxy noise, and dating errors). The estimated transition times and amplitudes allow us to assess causal climatological-tectonic influences on the following known features of the Cenozoic oxygen isotopic record: Paleocene-Eocene Thermal Maximum, Eocene-Oligocene Transition, Oligocene-Miocene Boundary, and the Middle Miocene Climate Optimum. We further describe and causally interpret the following features: Paleocene-Eocene warming trend, the two-step, long-term Eocene cooling, and the changes within the most recent interval (Miocene-Pliocene). We review the scope and methods of constructing Cenozoic stacks of benthic oxygen isotope records and present two new latitudinal stacks, which capture besides global ice volume also bottom water temperatures at low (less than 30°) and high latitudes. This review concludes with an identification of future directions for data collection, statistical method development, and climate modeling.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, W. M., Alexander, H., Bier, R. L., Miller, D. R., Muscarella, M. E., Pitz, K. J., & Smith, H. Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities? FEMS Microbiology Ecology, (2020): fiaa115, doi: 10.1093/femsec/fiaa115.

Description: Auxotrophy, or an organism's requirement for an exogenous source of an organic molecule, is widespread throughout species and ecosystems. Auxotrophy can result in obligate interactions between organisms, influencing ecosystem structure and community composition. We explore how auxotrophy-induced interactions between aquatic microorganisms affect microbial community structure and stability. While some studies have documented auxotrophy in aquatic microorganisms, these studies are not widespread, and we therefore do not know the full extent of auxotrophic interactions in aquatic environments. Current theoretical and experimental work suggests that auxotrophy links microbial community members through a complex web of metabolic dependencies. We discuss the proposed ways in which auxotrophy may enhance or undermine the stability of aquatic microbial communities, highlighting areas where our limited understanding of these interactions prevents us from being able to predict the ecological implications of auxotrophy. Finally, we examine an example of auxotrophy in harmful algal blooms to place this often theoretical discussion in a field context where auxotrophy may have implications for the development and robustness of algal bloom communities. We seek to draw attention to the relationship between auxotrophy and community stability in an effort to encourage further field and theoretical work that explores the underlying principles of microbial interactions.

Description: This work was supported by the National Science Foundation [OCE-1356192].

Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(15), (2020): e2020GL087266, doi:10.1029/2020GL087266.

Description: Using a recently compiled global marine data set of dissolved helium isotopes and helium and neon concentrations, we make an estimate of the inventory of hydrothermal 3He in the Southern Ocean to be 4.9 ± 0.6 × 104 moles. Under the assumption that the bulk of the hydrothermally sourced 3He is upwelled there, we use recent estimates of the global hydrothermal 3He flux to determine an e‐folding residence time of 99 ± 18 years, depending on assumptions of water mass and upwelling boundaries. Our estimate is within the broad range of values obtained from recent Southern Ocean circulation models.

Description: This work was funded under the auspices of the U.S. National Science Foundation's Grant OCE‐1756138.

Description: 2021-02-04

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ryan, S., Hellmer, H. H., Janout, M., Darelius, E., Vignes, L., & Schroeder, M. Exceptionally warm and prolonged flow of warm deep water toward the Filchner-Ronne Ice Shelf in 2017. Geophysical Research Letters, 47(13),(2020): e2020GL088119, doi:10.1029/2020GL088119.

Description: The Filchner‐Ronne Ice Shelf, fringing the southern Weddell Sea, is Antarctica's second largest ice shelf. At present, basal melt rates are low due to active dense water formation; however, model projections suggest a drastic increase in the future due to enhanced inflow of open‐ocean warm water. Mooring observations from 2014 to 2016 along the eastern flank of the Filchner Trough (76°S) revealed a distinct seasonal cycle with inflow if Warm Deep Water during summer and autumn. Here we present extended time series showing an exceptionally warm and long inflow in 2017, with maximum temperatures exceeding 0.5°C. Warm temperatures persisted throughout winter, associated with a fresh anomaly, which lead to a change in stratification over the shelf, favoring an earlier inflow in the following summer. We suggest that the fresh anomaly developed upstream after anomalous summer sea ice melting and contributed to a shoaling of the shelf break thermocline.

Description: The authors would like to express their gratitude to the officers and crews of RV Polarstern (cruises PS92 [Grant AWI_PS82_02], PS96 [Grant AWI_PS96_01], and PS111 [Grant AWI_PS111_01]), RRS Ernest Shackleton (Cruise ES060), and RSS James Clark Ross (Cruise JR16004) for their efficient assistance. E. D. received funding from the project TOBACO (267660), POLARPROG, Norges Forskningsrd.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wang, P., Huang, C., Lin, J., Jian, Z., Sun, Z., & Zhao, M. The South China Sea is not a mini-Atlantic: plate-edge rifting vs intra-plate rifting. National Science Review, 6(5), (2019): 902-913, doi:10.1093/nsr/nwz135.

Description: The South China Sea, as ‘a non-volcanic passive margin basin’ in the Pacific, has often been considered as a small-scale analogue of the Atlantic. The recent ocean drilling in the northern South China Sea margin found, however, that the Iberian model of non-volcanic rifted margin from the Atlantic does not apply to the South China Sea. In this paper, we review a variety of rifted basins and propose to discriminate two types of rifting basins: plate-edge type such as the South China Sea and intra-plate type like the Atlantic. They not only differ from each other in structure, formation process, lifespan and geographic size, but also occur at different stages of the Wilson cycle. The intra-plate rifting occurred in the Mesozoic and gave rise to large oceans, whereas the plate-edge rifting took place mainly in the mid-Cenozoic, with three-quarters of the basins concentrated in the Western Pacific. As a member of the Western Pacific system of marginal seas, the South China Sea should be studied not in isolation on its origin and evolution, but in a systematic context to include also its neighboring counterparts.

Description: This work was supported by the National Natural Science Foundation of China as a part of the ‘South China Sea Deep’ Project (91128000).

Description: Thaw slumps in ice‐rich permafrost can retreat tens of metres per summer, driven by the melt of subaerially exposed ground ice. However, some slumps retain an ice‐veneering debris cover as they retreat. A quantitative understanding of the thermal regime and geomorphic evolution of debris‐covered slumps in a warming climate is largely lacking. To characterize the thermal regime, we instrumented four debris‐covered slumps in the Canadian Low Arctic and developed a numerical conduction‐based model. The observed surface temperatures 20°C and steep thermal gradients indicate that debris insulates the ice by shifting the energy balance towards radiative and turbulent losses. After the model was calibrated and validated with field observations, it predicted sub‐debris ice melt to decrease four‐fold from 1.9 to 0.5 m as the thickness of the fine‐grained debris quadruples from 0.1 to 0.4 m. With warming temperatures, melt is predicted to increase most rapidly, in relative terms, for thick (~0.5‐1.0 m) debris covers. The morphology and evolution of the debris‐covered slumps were characterized using field and remote sensing observations, which revealed differences in association with morphology and debris composition. Two low‐angle slumps retreated continually despite their persistent fine‐grained debris covers. The observed elevation losses decreased from ~1.0 m/yr where debris thickness ~.2 m to 0.1 m/yr where thickness ~1.0 m. Conversely, a steep slump with a coarse‐grained debris veneer underwent short‐lived bursts of retreat, hinting at a complex interplay of positive and negative feedback processes. The insulative protection and behaviour of debris vary significantly with factors such as thickness, grain size and climate: debris thus exerts a fundamental, spatially variable influence on slump trajectories in a warming climate.

Description: This paper investigates different methods for quantifying thaw subsidence using terrestrial laser scanning (TLS) point clouds. Thaw subsidence is a slow (millimetre to centimetre per year) vertical displacement of the ground surface common in ice‐rich permafrost‐underlain landscapes. It is difficult to quantify thaw subsidence in tundra areas as they often lack stable reference frames. Also, there is no solid ground surface to serve as a basis for elevation measurements, due to a continuous moss–lichen cover. We investigate how an expert‐driven method improves the accuracy of benchmark measurements at discrete locations within two sites using multitemporal TLS data of a 1‐year period. Our method aggregates multiple experts’ determination of the ground surface in 3D point clouds, collected in a web‐based tool. We then compare this to the performance of a fully automated ground surface determination method. Lastly, we quantify ground surface displacement by directly computing multitemporal point cloud distances, thereby extending thaw subsidence observation to an area‐based assessment. Using the expert‐driven quantification as reference, we validate the other methods, including in‐situ benchmark measurements from a conventional field survey. This study demonstrates that quantifying the ground surface using 3D point clouds is more accurate than the field survey method. The expert‐driven method achieves an accuracy of 0.1 ± 0.1 cm. Compared to this, in‐situ benchmark measurements by single surveyors yield an accuracy of 0.4 ± 1.5 cm. This difference between the two methods is important, considering an observed displacement of 1.4 cm at the sites. Thaw subsidence quantification with the fully automatic benchmark‐based method achieves an accuracy of 0.2 ± 0.5 cm and direct point cloud distance computation an accuracy of 0.2 ± 0.9 cm. The range in accuracy is largely influenced by properties of vegetation structure at locations within the sites. The developed methods enable a link of automated quantification and expert judgement for transparent long‐term monitoring of permafrost subsidence.

Description: Microbial permafrost communities play an important role in carbon cycling and greenhouse gas fluxes. Despite the importance of these processes, there is a lack of knowledge about how environmental and climatic changes affect the abundance and composition of microorganisms. Here, we investigated the changing distribution of permafrost microorganisms in response to climate and lake-level changes. The permafrost core was drilled at the near shore of Lake El'gygytgyn, Far East Russian Arctic, and a combined microbiological and lipid biomarker approach was applied. The lower part of the permafrost core, deposited under subaquatic conditions, contains only small amounts of microbial signals; total organic carbon (TOC) content is sparse. After exposure of the site to subaerial conditions during the Allerød, the abundance of Bacteria and Archaea started to increase and the lake-level change is especially evidenced by the relative proportion of archaeal biomarkers. This increase is supported by rising bacterial and archaeal 16S ribosomal ribonucleic acid (rRNA) gene copy numbers and significant amounts of TOC during the late Allerød. After a small decrease during the colder Younger Dryas, the TOC content and the microbial signals strongly increase during the Holocene, presumably stimulated by pedogenesis. The occurrence of intact phospholipids indicates the presence of living microorganisms in these deposits. Our data suggest that methane formation is mainly expected for the subaerial interval, especially the Holocene where methanogens were identified by fingerprinting. This study emphasises the role of the uppermost permafrost deposits as a hotspot of carbon cycling in arctic environments, especially in the light of expected future global warming.

Description: Collapse of permafrost coasts delivers large quantities of particulate organic carbon (POC) to arctic coastal areas. With rapidly‐changing environmental conditions, sediment and organic carbon (OC) mobilization and transport pathways are also changing. Here, we assess the sources and sinks of POC in the highly‐dynamic nearshore zone of Herschel Island ‐ Qikiqtaruk (Yukon, Canada). Our results show that POC concentrations sharply decrease, from 15.9 to 0.3 mg L‐1, within the first 100 – 300 meters offshore. Simultaneously, radiocarbon ages of POC drop from 16,400 to 3,600 14C years, indicating rapid settling of old permafrost POC to underlying sediments. This suggests that permafrost OC is, apart from a very narrow resuspension zone (〈5 m water depth), predominantly deposited in nearshore sediments. While long‐term storage of permafrost OC in marine sediments potentially limits biodegradation and its subsequent release as greenhouse gas, resuspension of fine‐grained, OC‐rich sediments in the nearshore zone potentially enhances OC turnover.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lasek-Nesselquist, E., & Johnson, M. D. A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mixed-species transcriptome analyses. Genome Biology and Evolution, 11(11), (2019): 3218–3232, doi:10.1093/gbe/evz233.

Description: Recent high-throughput sequencing endeavors have yielded multigene/protein phylogenies that confidently resolve several inter- and intra-class relationships within the phylum Ciliophora. We leverage the massive sequencing efforts from the Marine Microbial Eukaryote Transcriptome Sequencing Project, other SRA submissions, and available genome data with our own sequencing efforts to determine the phylogenetic position of Mesodinium and to generate the most taxonomically rich phylogenomic ciliate tree to date. Regardless of the data mining strategy, the multiprotein data set, or the molecular models of evolution employed, we consistently recovered the same well-supported relationships among ciliate classes, confirming many of the higher-level relationships previously identified. Mesodinium always formed a monophyletic group with members of the Litostomatea, with mixotrophic species of Mesodinium—M. rubrum, M. major, and M. chamaeleon—being more closely related to each other than to the heterotrophic member, M. pulex. The well-supported position of Mesodinium as sister to other litostomes contrasts with previous molecular analyses including those from phylogenomic studies that exploited the same transcriptomic databases. These topological discrepancies illustrate the need for caution when mining mixed-species transcriptomes and indicate that identifying ciliate sequences among prey contamination—particularly for Mesodinium species where expression from stolen prey nuclei appears to dominate—requires thorough and iterative vetting with phylogenies that incorporate sequences from a large outgroup of prey.

Description: We thank David Beaudoin and Holly V. Moeller for their assistance in collecting cells and extracting RNA. We thank the Josephine Bay Paul Center for Comparative Molecular Biology and Evolution at the Marine Biological Laboratory for the generous use of their servers. This work was supported in part by a National Science Foundation grant to both authors (IOS 1354773).

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Long, M. H., Rheuban, J. E., McCorkle, D. C., Burdige, D. J., & Zimmerman, R. C. Closing the oxygen mass balance in shallow coastal ecosystems. Limnology and Oceanography, 64(6), (2019): 2694-2708, doi: 10.1002/lno.11248.

Description: The oxygen concentration in marine ecosystems is influenced by production and consumption in the water column and fluxes across both the atmosphere–water and benthic–water boundaries. Each of these fluxes has the potential to be significant in shallow ecosystems due to high fluxes and low water volumes. This study evaluated the contributions of these three fluxes to the oxygen budget in two contrasting ecosystems, a Zostera marina (eelgrass) meadow in Virginia, U.S.A., and a coral reef in Bermuda. Benthic oxygen fluxes were evaluated by eddy covariance. Water column oxygen production and consumption were measured using an automated water incubation system. Atmosphere–water oxygen fluxes were estimated by parameterizations based on wind speed or turbulent kinetic energy dissipation rates. We observed significant contributions of both benthic fluxes and water column processes to the oxygen mass balance, despite the often‐assumed dominance of the benthic communities. Water column rates accounted for 45% and 58% of the total oxygen rate, and benthic fluxes accounted for 23% and 39% of the total oxygen rate in the shallow (~ 1.5 m) eelgrass meadow and deeper (~ 7.5 m) reef site, respectively. Atmosphere–water fluxes were a minor component at the deeper reef site (3%) but a major component at the shallow eelgrass meadow (32%), driven by diel changes in the sign and strength of atmosphere–water gradient. When summed, the measured benthic, atmosphere–water, and water column rates predicted, with 85–90% confidence, the observed time rate of change of oxygen in the water column and provided an accurate, high temporal resolution closure of the oxygen mass balance.

Description: This work was substantially improved by comments from two anonymous reviewers. We thank Victoria Hill, David Ruble, Jeremy Bleakney, and Brian Collister for assistance in the field and the staff of the Bermuda Institute of Ocean Sciences and the Anheuser‐Busch Coastal Research Center for logistical support. This work was supported by NSF OCE grants 1657727 (to M.H.L. and D.C.M.), 1635403 (to R.C.Z. and D.J.B.), and 1633951 (to M.H.L.).

Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems XX (2019): Tyne, R. L., Barry, P. H., Hillegonds, D. J., Hunt, A. G., Kulongoski, J. T., Stephens, M. J., Byrne, D. J., & Ballentine, C. J. A novel method for the extraction, purification, and characterization of noble gases in produced fluids. Geochemistry Geophysics Geosystems, 20, (2019): 5588-5597, doi: 10.1029/2019GC008552.

Description: Hydrocarbon systems with declining or viscous oil production are often stimulated using enhanced oil recovery (EOR) techniques, such as the injection of water, steam, and CO2, in order to increase oil and gas production. As EOR and other methods of enhancing production such as hydraulic fracturing have become more prevalent, environmental concerns about the impact of both new and historical hydrocarbon production on overlying shallow aquifers have increased. Noble gas isotopes are powerful tracers of subsurface fluid provenance and can be used to understand the impact of EOR on hydrocarbon systems and potentially overlying aquifers. In oil systems, produced fluids can consist of a mixture of oil, water and gas. Noble gases are typically measured in the gas phase; however, it is not always possible to collect gases and therefore produced fluids (which are water, oil, and gas mixtures) must be analyzed. We outline a new technique to separate and analyze noble gases in multiphase hydrocarbon‐associated fluid samples. An offline double capillary method has been developed to quantitatively isolate noble gases into a transfer vessel, while effectively removing all water, oil, and less volatile hydrocarbons. The gases are then cleaned and analyzed using standard techniques. Air‐saturated water reference materials (n = 24) were analyzed and results show a method reproducibility of 2.9% for 4He, 3.8% for 20Ne, 4.5% for 36Ar, 5 .3% for 84Kr, and 5.7% for 132Xe. This new technique was used to measure the noble gas isotopic compositions in six produced fluid samples from the Fruitvale Oil Field, Bakersfield, California.

Description: This work was supported by a Natural Environment Research Council studentship to R. L. Tyne (grant NE/L002612/1) and the USGS (grant 15‐080‐250), as part of the California State Water Resource Control Board's, Oil and Gas Regional Groundwater Monitoring Program (RMP). Data can be accessed in Tables 1 and 2 and in the data release from Gannon et al. (2018). We thank the owners and operators at the Fruitvale Oil Field for access to wells. We thank Stuart Gilfillan and an anonymous reviewer for their constructive reviews as well as Marie Edmonds for editorial handling. We also thank Matthew Landon and Myles Moor from the USGS who provided helpful comments on an earlier version of the manuscript. Any use of trade, firm or product names are for descriptive purposes only and do not imply endorsement by the U.S. Government.

Description: 2020-04-14

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chapman, A. S. A., Beaulieu, S. E., Colaco, A., Gebruk, A. V., Hilario, A., Kihara, T. C., Ramirez-Llodra, E., Sarrazin, J., Tunnicliffe, V., Amon, D. J., Baker, M. C., Boschen-Rose, R. E., Chen, C., Cooper, I. J., Copley, J. T., Corbari, L., Cordes, E. E., Cuvelier, D., Duperron, S., Du Preez, C., Gollner, S., Horton, T., Hourdez, S., Krylova, E. M., Linse, K., LokaBharathi, P. A., Marsh, L., Matabos, M., Mills, S. W., Mullineaux, L. S., Rapp, H. T., Reid, W. D. K., Rybakova (Goroslavskaya), E., Thomas, T. R. A., Southgate, S. J., Stohr, S., Turner, P. J., Watanabe, H. K., Yasuhara, M., & Bates, A. E. sFDvent: a global trait database for deep-sea hydrothermal-vent fauna. Global Ecology and Biogeography, 28(11), (2019): 1538-1551, doi: 10.1111/geb.12975.

Description: Motivation Traits are increasingly being used to quantify global biodiversity patterns, with trait databases growing in size and number, across diverse taxa. Despite growing interest in a trait‐based approach to the biodiversity of the deep sea, where the impacts of human activities (including seabed mining) accelerate, there is no single repository for species traits for deep‐sea chemosynthesis‐based ecosystems, including hydrothermal vents. Using an international, collaborative approach, we have compiled the first global‐scale trait database for deep‐sea hydrothermal‐vent fauna – sFDvent (sDiv‐funded trait database for the Functional Diversity of vents). We formed a funded working group to select traits appropriate to: (a) capture the performance of vent species and their influence on ecosystem processes, and (b) compare trait‐based diversity in different ecosystems. Forty contributors, representing expertise across most known hydrothermal‐vent systems and taxa, scored species traits using online collaborative tools and shared workspaces. Here, we characterise the sFDvent database, describe our approach, and evaluate its scope. Finally, we compare the sFDvent database to similar databases from shallow‐marine and terrestrial ecosystems to highlight how the sFDvent database can inform cross‐ecosystem comparisons. We also make the sFDvent database publicly available online by assigning a persistent, unique DOI. Main types of variable contained Six hundred and forty‐six vent species names, associated location information (33 regions), and scores for 13 traits (in categories: community structure, generalist/specialist, geographic distribution, habitat use, life history, mobility, species associations, symbiont, and trophic structure). Contributor IDs, certainty scores, and references are also provided. Spatial location and grain Global coverage (grain size: ocean basin), spanning eight ocean basins, including vents on 12 mid‐ocean ridges and 6 back‐arc spreading centres. Time period and grain sFDvent includes information on deep‐sea vent species, and associated taxonomic updates, since they were first discovered in 1977. Time is not recorded. The database will be updated every 5 years. Major taxa and level of measurement Deep‐sea hydrothermal‐vent fauna with species‐level identification present or in progress. Software format .csv and MS Excel (.xlsx).

Description: We would like to thank the following experts, who are not authors on this publication but made contributions to the sFDvent database: Anna Metaxas, Alexander Mironov, Jianwen Qiu (seep species contributions, to be added to a future version of the database) and Anders Warén. We would also like to thank Robert Cooke for his advice, time, and assistance in processing the raw data contributions to the sFDvent database using R. Thanks also to members of iDiv and its synthesis centre – sDiv – for much‐valued advice, support, and assistance during working‐group meetings: Doreen Brückner, Jes Hines, Borja Jiménez‐Alfaro, Ingolf Kühn and Marten Winter. We would also like to thank the following supporters of the database who contributed indirectly via early design meetings or members of their research groups: Malcolm Clark, Charles Fisher, Adrian Glover, Ashley Rowden and Cindy Lee Van Dover. Finally, thanks to the families of sFDvent working group members for their support while they were participating in meetings at iDiv in Germany. Financial support for sFDvent working group meetings was gratefully received from sDiv, the Synthesis Centre of iDiv (DFG FZT 118). ASAC was a PhD candidate funded by the SPITFIRE Doctoral Training Partnership (supported by the Natural Environmental Research Council, grant number: NE/L002531/1) and the University of Southampton at the time of submission. ASAC also thanks Dominic, Lesley, Lettice and Simon Chapman for their support throughout this project. AEB and VT are sponsored through the Canada Research Chair Programme. SEB received support from National Science Foundation Division of Environmental Biology Award #1558904 and The Joint Initiative Awards Fund from the Andrew W. Mellon Foundation. AC is supported by Program Investigador (IF/00029/2014/CP1230/CT0002) from Fundação para a Ciência e a Tecnologia (FCT). This study also had the support of Fundação para a Ciência e a Tecnologia, through the strategic project UID/MAR/04292/2013 granted to marine environmental sciences centre. Data compiled by AVG and EG were supported by Russian science foundation Grant 14‐50‐00095. AH was supported by the grant BPD/UI88/5805/2017 awarded by CESAM (UID/AMB/50017), which is financed by FCT/Ministério da Educação through national funds and co‐funded by fundo Europeu de desenvolvimento regional, within the PT2020 Partnership Agreement and Compete 2020. ERLL was partially supported by the MarMine project (247626/O30). JS was supported by Ifremer. Data on vent fauna from the East Scotia Ridge, Mid‐Cayman Spreading Centre, and Southwest Indian Ridge were obtained by UK natural environment research council Grants NE/D01249X/1, NE/F017774/1 and NE/H012087/1, respectively. REBR's contribution was supported by a Postdoctoral Fellowship at the University of Victoria, funded by the Canadian Healthy Oceans Network II Strategic Research Program (CHONe II). DC is supported by a post‐doctoral scholarship (SFRH/BPD/110278/2015) from FCT. HTR was supported by the Research Council of Norway through project number 70184227 and the KG Jebsen Centre for Deep Sea Research (University of Bergen). MY was partially supported by grants from the Research Grants Council of the Hong Kong Special Administrative Region, China (project codes: HKU 17306014, HKU 17311316).

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Weber, L., González-Díaz, P., Armenteros, M., Ferrer, V. M., Bretos, F., Bartels, E., Santoro, A. E., & Apprill, A. Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys. Environmental Microbiology, 22(1), (2019): 499-519, doi: 10.1111/1462-2920.14870.

Description: There are a few baseline reef‐systems available for understanding the microbiology of healthy coral reefs and their surrounding seawater. Here, we examined the seawater microbial ecology of 25 Northern Caribbean reefs varying in human impact and protection in Cuba and the Florida Keys, USA, by measuring nutrient concentrations, microbial abundances, and respiration rates as well as sequencing bacterial and archaeal amplicons and community functional genes. Overall, seawater microbial composition and biogeochemistry were influenced by reef location and hydrogeography. Seawater from the highly protected ‘crown jewel’ offshore reefs in Jardines de la Reina, Cuba had low concentrations of nutrients and organic carbon, abundant Prochlorococcus, and high microbial community alpha diversity. Seawater from the less protected system of Los Canarreos, Cuba had elevated microbial community beta‐diversity whereas waters from the most impacted nearshore reefs in the Florida Keys contained high organic carbon and nitrogen concentrations and potential microbial functions characteristic of microbialized reefs. Each reef system had distinct microbial signatures and within this context, we propose that the protection and offshore nature of Jardines de la Reina may preserve the oligotrophic paradigm and the metabolic dependence of the community on primary production by picocyanobacteria.

Description: We thank Justin Ossolinski, Sean McNally, Tom Lankiewicz, Lázaro García, and the crew from R/V Felipe Poey for assistance with sample collection and processing. We thank Marlin Nauticas and Marinas for the use of their dive facilities. We thank Chris Wright, Mark Band, and staff at the University of Illinois W. M. Keck Center for Comparative and Functional Genomics for sequencing assistance, Karen Selph for training in flow cytometry, Krista Longnecker for TOC and TN analyses, and Joe Jennings for nutrient analyses. Funding was provided to A.A. and A.E.S. by a Dalio Explore award from the Dalio Foundation (now 'OceanX') and analysis time was supported with the NSF Graduate Research Fellowship award to L.W. and NSF award OCE 1736288 to A.A. Research was conducted under the LH112 AN (25) 2015 licence granted by the Cuban Center for Inspection and Environmental Control.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Xu, X., Li, G., Li, C., Zhang, J., Wang, Q., Simmons, D. K., Chen, X., Wijesena, N., Zhu, W., Wang, Z., Wang, Z., Ju, B., Ci, W., Lu, X., Yu, D., Wang, Q., Aluru, N., Oliveri, P., Zhang, Y. E., Martindale, M. Q., & Liu, J. Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis. National Science Review, 6(5), (2019):993-1003, doi:10.1093/nsr/nwz064.

Description: Major evolutionary transitions are enigmas, and the most notable enigma is between invertebrates and vertebrates, with numerous spectacular innovations. To search for the molecular connections involved, we asked whether global epigenetic changes may offer a clue by surveying the inheritance and reprogramming of parental DNA methylation across metazoans. We focused on gametes and early embryos, where the methylomes are known to evolve divergently between fish and mammals. Here, we find that methylome reprogramming during embryogenesis occurs neither in pre-bilaterians such as cnidarians nor in protostomes such as insects, but clearly presents in deuterostomes such as echinoderms and invertebrate chordates, and then becomes more evident in vertebrates. Functional association analysis suggests that DNA methylation reprogramming is associated with development, reproduction and adaptive immunity for vertebrates, but not for invertebrates. Interestingly, the single HOX cluster of invertebrates maintains unmethylated status in all stages examined. In contrast, the multiple HOX clusters show dramatic dynamics of DNA methylation during vertebrate embryogenesis. Notably, the methylation dynamics of HOX clusters are associated with their spatiotemporal expression in mammals. Our study reveals that DNA methylation reprogramming has evolved dramatically during animal evolution, especially after the evolutionary transitions from invertebrates to vertebrates, and then to mammals.

Description: This work was supported by the National Key Research and Development Program of China (2018YFC1003303), the Strategic Priority Research Program of the CAS (XDB13040200), the National Natural Science Foundation of China (91519306, 31425015), the Youth Innovation Promotion Association of the CAS and the Key Research Program of Frontier Sciences, CAS (QYZDY-SSW-SMC016).

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Staudinger, M. D., Goyert, H., Suca, J. J., Coleman, K., Welch, L., Llopiz, J. K., Wiley, D., Altman, I., Applegate, A., Auster, P., Baumann, H., Beaty, J., Boelke, D., Kaufman, L., Loring, P., Moxley, J., Paton, S., Powers, K., Richardson, D., Robbins, J., Runge, J., Smith, B., Spiegel, C., & Steinmetz, H. The role of sand lances (Ammodytes sp.) in the Northwest Atlantic ecosystem: a synthesis of current knowledge with implications for conservation and management. Fish and Fisheries, 00, (2020): 1-34, doi:10.1111/faf.12445.

Description: The American sand lance (Ammodytes americanus, Ammodytidae) and the Northern sand lance (A. dubius, Ammodytidae) are small forage fishes that play an important functional role in the Northwest Atlantic Ocean (NWA). The NWA is a highly dynamic ecosystem currently facing increased risks from climate change, fishing and energy development. We need a better understanding of the biology, population dynamics and ecosystem role of Ammodytes to inform relevant management, climate adaptation and conservation efforts. To meet this need, we synthesized available data on the (a) life history, behaviour and distribution; (b) trophic ecology; (c) threats and vulnerabilities; and (d) ecosystem services role of Ammodytes in the NWA. Overall, 72 regional predators including 45 species of fishes, two squids, 16 seabirds and nine marine mammals were found to consume Ammodytes. Priority research needs identified during this effort include basic information on the patterns and drivers in abundance and distribution of Ammodytes, improved assessments of reproductive biology schedules and investigations of regional sensitivity and resilience to climate change, fishing and habitat disturbance. Food web studies are also needed to evaluate trophic linkages and to assess the consequences of inconsistent zooplankton prey and predator fields on energy flow within the NWA ecosystem. Synthesis results represent the first comprehensive assessment of Ammodytes in the NWA and are intended to inform new research and support regional ecosystem‐based management approaches.

Description: This manuscript is the result of follow‐up work stemming from a working group formed at a two‐day multidisciplinary and international workshop held at the Parker River National Wildlife Refuge, Massachusetts in May 2017, which convened 55 experts scientists, natural resource managers and conservation practitioners from 15 state, federal, academic and non‐governmental organizations with interest and expertise in Ammodytes ecology. Support for this effort was provided by USFWS, NOAA Stellwagen Bank National Marine Sanctuary, U.S. Department of the Interior, U.S. Geological Survey, Northeast Climate Adaptation Science Center (Award # G16AC00237), an NSF Graduate Research Fellowship to J.J.S., a CINAR Fellow Award to J.K.L. under Cooperative Agreement NA14OAR4320158, NSF award OCE‐1325451 to J.K.L., NSF award OCE‐1459087 to J.A.R, a Regional Sea Grant award to H.B. (RNE16‐CTHCE‐l), a National Marine Sanctuary Foundation award to P.J.A. (18‐08‐B‐196) and grants from the Mudge Foundation. The contents of this paper are the responsibility of the authors and do not necessarily represent the views of the National Oceanographic and Atmospheric Administration, U.S. Fish and Wildlife Service, New England Fishery Management Council and Mid‐Atlantic Fishery Management Council. This manuscript is submitted for publication with the understanding that the United States Government is authorized to reproduce and distribute reprints for Governmental purposes. Any use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vallecillo-Viejo, I. C., Liscovitch-Brauer, N., Diaz Quiroz, J. F., Montiel-Gonzalez, Maria F., Nemes, Sonya E., Rangan, K. J., Levinson, S. R., Eisenberg, E., & Rosenthal, J. J. C. Spatially regulated editing of genetic information within a neuron. Nucleic Acids Research, (2020): gkaa172, doi: 10.1093/nar/gkaa172.

Description: In eukaryotic cells, with the exception of the specialized genomes of mitochondria and plastids, all genetic information is sequestered within the nucleus. This arrangement imposes constraints on how the information can be tailored for different cellular regions, particularly in cells with complex morphologies like neurons. Although messenger RNAs (mRNAs), and the proteins that they encode, can be differentially sorted between cellular regions, the information itself does not change. RNA editing by adenosine deamination can alter the genome’s blueprint by recoding mRNAs; however, this process too is thought to be restricted to the nucleus. In this work, we show that ADAR2 (adenosine deaminase that acts on RNA), an RNA editing enzyme, is expressed outside of the nucleus in squid neurons. Furthermore, purified axoplasm exhibits adenosine-to-inosine activity and can specifically edit adenosines in a known substrate. Finally, a transcriptome-wide analysis of RNA editing reveals that tens of thousands of editing sites (〉70% of all sites) are edited more extensively in the squid giant axon than in its cell bodies. These results indicate that within a neuron RNA editing can recode genetic information in a region-specific manner.

Description: National Science Foundation (NSF) [IOS1557748 to J.R.]; United States–Israel Binational Science Foundation [BSF2013094 to J.R. and E.E.]; The Grass Foundation grant in support of the Doryteuthis pealeii Genome Project, and a gift by Mr. Edward Owens. Funding for open access charge: United States–Israel Binational Science Foundation [BSF2013094].

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, A. M., Barrio-Hernandez, I., Hoving, H. J., Tafur-Jimenez, R., Chu, C., Frazao, B., Petersen, B., Penaloza, F., Musacchia, F., Alexander, G. C., Osorio, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Ponten, T., Nielsen, R., & Gilbert, M. T. P. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience, 9(1), (2020): giz152. doi: 10.1093/gigascience/giz152.

Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea–dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.

Description: R.R.F. thanks the Villum Fonden for grant VKR023446 (Villum Fonden Young Investigator Grant), the Portuguese Science Foundation (FCT) for grant PTDC/MAR/115347/2009; COMPETE-FCOMP-01-012; FEDER-015453, Marie Curie Actions (FP7-PEOPLE-2010-IEF, Proposal 272927), and the Danish National Research Foundation (DNRF96) for its funding of the Center for Macroecology, Evolution, and Climate. H.O. thanks the Rede Nacional de Espectrometria de Massa, ROTEIRO/0028/2013, ref. LISBOA-01-0145-FEDER-022125, supported by COMPETE and North Portugal Regional Operational Programme (Norte2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). A.C. thanks FCT for project UID/Multi/04423/2019. M.P. acknowledges the support from the Wellcome Trust (grant number WT108749/Z/15/Z) and the European Molecular Biology Laboratory. M.P.T.G. thanks the Danish National Research Foundation for its funding of the Center for GeoGenetics (grant DNRF94) and Lundbeck Foundation for grant R52–5062 on Pathogen Palaeogenomics. S.R. was supported by the Novo Nordisk Foundation grant NNF14CC0001. A.H. is supported by a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (fellowship reference: BB/N020146/1). T.B. is supported by the Biotechnology and Biological Sciences Research Council-funded South West Biosciences Doctoral Training Partnership (training grant reference BB/M009122/1). This work was partially funded by the Lundbeck Foundation (R52-A4895 to B.B.). H.J.T.H. was supported by the David and Lucile Packard Foundation, the Netherlands Organization for Scientific Research (#825.09.016), and currently by the Deutsche Forschungsgemeinschaft (DFG) under grant HO 5569/2-1 (Emmy Noether Junior Research Group). T.V. and B. Brejova were supported by grants from the Slovak grant agency VEGA (1/0684/16, 1/0458/18). F.S. was supported by a PhD grant (SFRH/BD/126560/2016) from FCT. A.A. was partly supported by the FCT project PTDC/CTA-AMB/31774/2017. C.C. and Y.W. are partly supported by grant IIS-1526415 from the US National Science Foundation. Computation for the work described in this article was partially supported by the DeiC National Life Science Supercomputer at DTU.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ritschard, E. A., Whitelaw, B., Albertin, C. B., Cooke, I. R., Strugnell, J. M., & Simakov, O. Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods: co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of cephalopod novelties. BioEssays, 41, (2019): 1900073, doi: 10.1002/bies.201900073.

Description: How genomic innovation translates into organismal organization remains largely unanswered. Possessing the largest invertebrate nervous system, in conjunction with many species‐specific organs, coleoid cephalopods (octopuses, squids, cuttlefishes) provide exciting model systems to investigate how organismal novelties evolve. However, dissecting these processes requires novel approaches that enable deeper interrogation of genome evolution. Here, the existence of specific sets of genomic co‐evolutionary signatures between expanded gene families, genome reorganization, and novel genes is posited. It is reasoned that their co‐evolution has contributed to the complex organization of cephalopod nervous systems and the emergence of ecologically unique organs. In the course of reviewing this field, how the first cephalopod genomic studies have begun to shed light on the molecular underpinnings of morphological novelty is illustrated and their impact on directing future research is described. It is argued that the application and evolutionary profiling of evolutionary signatures from these studies will help identify and dissect the organismal principles of cephalopod innovations. By providing specific examples, the implications of this approach both within and beyond cephalopod biology are discussed.

Description: E.A.R. and O.S. are supported by the Austrian Science Fund (Grant No. P30686‐B29). E.A.R. is supported by Stazione Zoologica Anton Dohrn (Naples, Italy) PhD Program. The authors wish to thank Graziano Fiorito (SZN, Italy), Hannah Schmidbaur (University of Vienna, Austria), Thomas Hummel (University of Vienna, Austria) for many insightful comments and reading of the draft manuscript. The authors would like to apologize to all colleagues whose work has been omitted due to space constraints.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Arenas Gómez, Claudia M., Sabin, K. Z., & Echeverri, K. Wound healing across the animal kingdom: Crosstalk between the immune system and the extracellular matrix. Developmental Dynamics, (2020): 1-13, doi:10.1002/dvdy.178.

Description: Tissue regeneration is widespread in the animal kingdom. To date, key roles for different molecular and cellular programs in regeneration have been described, but the ultimate blueprint for this talent remains elusive. In animals capable of tissue regeneration, one of the most crucial stages is wound healing, whose main goal is to close the wound and prevent infection. In this stage, it is necessary to avoid scar formation to facilitate the activation of the immune system and remodeling of the extracellular matrix, key factors in promoting tissue regeneration. In this review, we will discuss the current state of knowledge regarding the role of the immune system and the interplay with the extracellular matrix to trigger a regenerative response.

Description: The research in the Echeverri lab is supported NIH NCID R01 to Karen Echeverri and start‐up funds from the MBL. Keith Z. Sabin has been supported by an NIH T32 GM113846 grant.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Munoz, S. E., Porter, T. J., Bakkelund, A., Nusbaumer, J., Dee, S. G., Hamilton, B., Giosan, L., & Tierney, J. E. Lipid biomarker record documents hydroclimatic variability of the Mississippi River Basin during the common era. Geophysical Research Letters, 47(12), (2020): e2020GL087237, doi:10.1029/2020GL087237.

Description: Floods and droughts in the Mississippi River basin are perennial hazards that cause severe economic disruption. Here we develop and analyze a new lipid biomarker record from Horseshoe Lake (Illinois, USA) to evaluate the climatic conditions associated with hydroclimatic extremes that occurred in this region over the last 1,800 years. We present geochemical proxy evidence of temperature and moisture variability using branched glycerol dialkyl glycerol tetraethers (brGDGTs) and plant leaf wax hydrogen isotopic composition (δ2Hwax) and use isotope‐enabled coupled model simulations to diagnose the controls on these proxies. Our data show pronounced warming during the Medieval era (CE 1000–1,600) that corresponds to midcontinental megadroughts. Severe floods on the upper Mississippi River basin also occurred during the Medieval era and correspond to periods of enhanced warm‐season moisture. Our findings imply that projected increases in temperature and warm‐season precipitation could enhance both drought and flood hazards in this economically vital region.

Description: This project was supported by grants to S. E. M and L. G. (NSF EAR‐1804107), T. J. P. (NSERC Discovery Grant), and S. G. D. (NOAA‐NA18OAR4310427).

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bowen, J. C., Ward, C. P., Kling, G. W., & Cory, R. M. Arctic amplification of global warming strengthened by sunlight oxidation of permafrost carbon to CO2. Geophysical Research Letters, 47(12), (2020): e2020GL087085, doi:10.1029/2020GL087085.

Description: Once thawed, up to 15% of the ∼1,000 Pg of organic carbon (C) in arctic permafrost soils may be oxidized to carbon dioxide (CO2) by 2,100, amplifying climate change. However, predictions of this amplification strength ignore the oxidation of permafrost C to CO2 in surface waters (photomineralization). We characterized the wavelength dependence of permafrost dissolved organic carbon (DOC) photomineralization and demonstrate that iron catalyzes photomineralization of old DOC (4,000–6,300 a BP) derived from soil lignin and tannin. Rates of CO2 production from photomineralization of permafrost DOC are twofold higher than for modern DOC. Given that model predictions of future net loss of ecosystem C from thawing permafrost do not include the loss of CO2 to the atmosphere from DOC photomineralization, current predictions of an average of 208 Pg C loss by 2,299 may be too low by ~14%.

Description: This research was supported by National Science Foundation (NSF) CAREER 1351745 (R.M.C.), DEB 1637459 and 1754835 (G.W.K.), the Camille and Henry Dreyfus Postdoctoral Program in Environmental Chemistry (R.M.C. and C.P.W.), the Frank and Lisina Hock Endowed Fund (C.P.W.), and the NOSAMS Graduate Student Internship Program (J.C.B.).

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Martins, M. C. I., Miller, C., Hamilton, P., Robbins, J., Zitterbart, D. P., & Moore, M. Respiration cycle duration and seawater flux through open blowholes of humpback (Megaptera novaeangliae) and North Atlantic right (Eubalaena glacialis) whales. Marine Mammal Science, (2020): 1-20, doi:10.1111/mms.12703.

Description: Little is known about the dynamics of baleen whale respiratory cycles, especially the mechanics and activity of the blowholes and their interaction with seawater. In this study, the duration of complete respiration cycles (expiration/inhalation events) were quantified for the first time in two species: North Atlantic right whale (NARW) and humpback whale (HW) using high resolution, detailed imagery from an unoccupied aerial system (UAS). The mean duration of complete respiration cycles (expiration/inhalation event) in the NARW and HW were 3.07 s (SD = 0.503, n = 15) and 2.85 s (SD = 0.581, n = 21), respectively. Furthermore, we saw no significant differences in respiration cycle duration between age and sex classes in the NARW, but significant differences were observed between age classes in the HW. The observation of seawater covering an open blowhole was also quantified, with NARW having 20% of all breaths with seawater presence versus 90% in HW. Seawater incursion has not been described previously and challenges the general consensus that water does not enter the respiratory tract in baleen whales. Prevalent seawater has implications for the analysis and interpretation of exhaled respiratory vapor/mucosa samples, as well as for the potential inhalation of oil in spills.

Description: Samples were collected under NMFS NOAA Permits 17355, 17355‐01, and 21371, and with approval from the Woods Hole Oceanographic Institution Institutional Animal Care and Use Committee. Funding by Ocean Life Institute of the Woods Hole Oceanographic Institution, NOAA NA14OAR4320158 and University College London Master of Research in Biodiversity, Evolution and Conservation program.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huynh, A., Maktabi, B., Reddy, C. M., O'Neil, G. W., Chandler, M., & Baki, G. Evaluation of alkenones, a renewably sourced, plant-derived wax as a structuring agent for lipsticks. International Journal of Cosmetic Science, (2020), doi:10.1111/ics.12597.

Description: OBJECTIVE Waxes are used as structuring agents in lipsticks. There are a variety of waxes combined in a single lipstick to provide good stability, pleasant texture and good pay‐off. Due to a significant growth for natural, green and sustainable products, there is a constant search for alternatives to animal‐derived and petroleum‐derived ingredients. In this study, a green, non‐animalderived wax, namely long‐chain ketones (referred to as alkenones), sourced from marine microalgae was formulated into lipsticks and evaluated as a structuring agent. METHODS Alkenones were used as a substitute for microcrystalline wax, ozokerite and candelilla wax, typical structuring agents. In total, 384 lipsticks were formulated: L1 (control, no alkenones), L2 (alkenones as a substitute for ozokerite), L3 (alkenones as a substitute for microcrystalline wax) and L4 (alkenones as a substitute for candelilla wax). Products were tested for hardness (bending force), stiffness, firmness (needle penetration), pay‐off (using a texture analyser and a consumer panel), friction, melting point and stability for 12 weeks at 25 and 45°C. RESULTS Alkenones influenced each characteristic evaluated. In general, lipsticks with alkenones (L2‐L4) became softer and easier to bend compared to the control (L1). In terms of firmness, lipsticks were similar to the control, except for L4, which was significantly (P 〈 0.05) firmer. The effect on pay‐off was not consistent. L2 and L3 had higher pay‐off to skin and fabric than L1. In addition, L4 had the lowest amount transferred, but it still had the highest colour intensity on skin. Alkenones influenced friction (glide) positively; the average friction decreased for L2‐L4. The lowest friction (i.e. best glide) was shown in L4. Melting point of the lipsticks was lower when alkenones were present. Overall, L4, containing 7% of 4 alkenones in combination with microcrystalline wax, ozokerite and carnauba wax, was found to have the most desirable attributes, including ease of bending, high level of firmness, low pay‐off in terms of amount, high colour intensity on skin and low friction (i.e. better glide). Consumers preferred L4 the most overall. CONCLUSION Results of this study indicate that alkenones offer a sustainable, non‐animal and non‐petroleum‐derived choice as a structuring agent for lipsticks.

Description: The authors would like to thank Texture Technologies for the technical assistance provided during this project. This research was funded by the Washington Research Foundation and a private donor from friends of the Woods Hole Oceanographic Institution, grant number N‐127244.

Description: The attenuation coefficient b is one of the most common ways to describe how strong the carbon flux is attenuated throughout the water column. Therefore, b is an essential input variable in many carbon flux and climate models. Marsay et al. (2015, https://doi.org/10.1073/pnas.1415311112) proposed that the median surface water temperature (0–500 m) may be a predictor of b, but our observations from Arctic waters challenge this hypothesis. We found a highly variable attenuation coefficient (b = 0.43–1.84) in cold Arctic waters (〈4.1 °C). Accordingly, we suggest that water temperature is not a globally valid predictor of the attenuation coefficient. We advocate instead that the phytoplankton composition and especially the relative abundance of diatoms can be used to parametrize the carbon flux attenuation in local and global carbon flux models.

Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 5 (2013): 2368-2381, doi:10.1093/gbe/evt179.

Description: The dinoflagellates are an evolutionarily and ecologically important group of microbial eukaryotes. Previous work suggests that horizontal gene transfer (HGT) is an important source of gene innovation in these organisms. However, dinoflagellate genomes are notoriously large and complex, making genomic investigation of this phenomenon impractical with currently available sequencing technology. Fortunately, de novo transcriptome sequencing and assembly provides an alternative approach for investigating HGT. We sequenced the transcriptome of the dinoflagellate Alexandrium tamarense Group IV to investigate how HGT has contributed to gene innovation in this group. Our comprehensive A. tamarense Group IV gene set was compared with those of 16 other eukaryotic genomes. Ancestral gene content reconstruction of ortholog groups shows that A. tamarense Group IV has the largest number of gene families gained (314–1,563 depending on inference method) relative to all other organisms in the analysis (0–782). Phylogenomic analysis indicates that genes horizontally acquired from bacteria are a significant proportion of this gene influx, as are genes transferred from other eukaryotes either through HGT or endosymbiosis. The dinoflagellates also display curious cases of gene loss associated with mitochondrial metabolism including the entire Complex I of oxidative phosphorylation. Some of these missing genes have been functionally replaced by bacterial and eukaryotic xenologs. The transcriptome of A. tamarense Group IV lends strong support to a growing body of evidence that dinoflagellate genomes are extraordinarily impacted by HGT.

Description: J.H.W. was supported by the NSF IGERT Program in Comparative Genomics at the University of Arizona (grant number DGE-0654435). This work was supported by grants from the National Science Foundation (grant numbers OCE-0723498, EF-0732440) and funding provided by the BIO5 Institute at the University of Arizona to J.D.H.

Description: Author Posting. © Author, 2014. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 198 (2014): 622-636, doi: 10.1093/gji/ggu121.

Description: The robust statistical model of a Gaussian core contaminated by outlying data that underlies robust estimation of the magnetotelluric (MT) response function has been re-examined. The residuals from robust estimators are systematically long tailed compared to a distribution based on the Gaussian, and hence are inconsistent with the robust model. Instead, MT data are pervasively described by the alpha stable distribution family whose variance and sometimes mean are undefined. A maximum likelihood estimator (MLE) that exploits the stable nature of MT data is formulated, and its two-stage implementation in which stable parameters are first fit to the data and then the MT responses are solved for is described. The MLE is shown to be inherently robust, but differs from the conventional robust estimator because it is based on a model derived from the data, while robust estimators are ad hoc, being based on the robust model that is inconsistent with actual data. Propriety versus impropriety of the complex MT response was investigated, and a likelihood ratio test for propriety and its null distribution was established. The Cramér-Rao lower bounds for the covariance matrix of proper and improper MT responses were specified. The MLE was applied to exemplar long period and broad-band data sets from South Africa. Both are shown to be significantly stably distributed using the Kolmogorov–Smirnov goodness of fit and Ansari-Bradley non-parametric dispersion tests. Impropriety of the MT responses at both sites is pervasive, hence the improper Cramér-Rao bound was used to estimate the MLE covariance. The MLE is shown to be nearly unbiased and well described by a Gaussian distribution based on bootstrap simulation. The MLE was compared to a conventional robust estimator, establishing that the standard errors of the former are systematically smaller than for the latter and that the standardized differences between them exhibit excursions that are both too frequent and too large to be described by a Gaussian model. This is ascribed to pervasive bias of the robust estimator that is to some degree obscured by their systematically large confidence bounds. Finally, a series of topics for further investigation is proposed.

Description: This work was supported by NSF grant EAR0809074.

Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Plankton Research 36 (2014): 943-955, doi:10.1093/plankt/fbu029.

Description: The mechanisms by which phytoplankton cope with stressors in the marine environment are neither fully characterized nor understood. As viruses are the most abundant entities in the global ocean and represent a strong top-down regulator of phytoplankton abundance and diversity, we sought to characterize the cellular response of two marine haptophytes to virus infection in order to gain more knowledge about the nature and diversity of microalgal responses to this chronic biotic stressor. We infected laboratory cultures of the haptophytes Haptolina ericina and Phaeocystis pouchetii with CeV-01B or PpV-01B dsDNA viruses, respectively, and assessed the extent to which host cellular responses resemble programmed cell death (PCD) through the activation of diagnostic molecular and biochemical markers. Pronounced DNA fragmentation and activation of cysteine aspartate-specific proteases (caspases) were only detected in virus-infected cultures of these phytoplankton. Inhibition of host caspase activity by addition of the pan-caspase inhibitor z-VAD-fmk did not impair virus production in either host–virus system, differentiating it from the Emiliania huxleyi-Coccolithovirus model of haptophyte–virus interactions. Nonetheless, our findings point to a general conservation of PCD-like activation during virus infection in ecologically diverse haptophytes, with the subtle heterogeneity of cell death biochemical responses possibly exerting differential regulation on phytoplankton abundance and diversity.

Description: Funding to J.L.R, R.-A.S. and A.L. was provided by the Norwegian Research Council for the “VIPMAP” (nr. 186142) and “HAPTODIV” (nr. 190307) projects, and by the European Research Council Advanced Grant ERC-AG-LS8 “Microbial Network Organisation” (MINOS, project number 250254). J.L.R. received a FRIBIO overseas research fellowship from the Norwegian Research Council. K.D.B. and B.V.M. were supported by funding from the United States National Science Foundation (OCE-1061883).

Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 6 (2014): 2210-2217, doi:10.1093/gbe/evu177.

Description: The alpha subunits of voltage-gated calcium channels (Cavs) are large transmembrane proteins responsible for crucial physiological processes in excitable cells. They are assisted by three auxiliary subunits that can modulate their electrical behavior. Little is known about the evolution and roles of the various subunits of Cavs in nonbilaterian animals and in nonanimal lineages. For this reason, we mapped the phyletic distribution of the four channel subunits and reconstructed their phylogeny. Although alpha subunits have deep evolutionary roots as ancient as the split between plants and opistokonths, beta subunits appeared in the last common ancestor of animals and their close-relatives choanoflagellates, gamma subunits are a bilaterian novelty and alpha2/delta subunits appeared in the lineage of Placozoa, Cnidaria, and Bilateria. We note that gene losses were extremely common in the evolution of Cavs, with noticeable losses in multiple clades of subfamilies and also of whole Cav families. As in vertebrates, but not protostomes, Cav channel genes duplicated in Cnidaria. We characterized by in situ hybridization the tissue distribution of alpha subunits in the sea anemone Nematostella vectensis, a nonbilaterian animal possessing all three Cav subfamilies common to Bilateria. We find that some of the alpha subunit subtypes exhibit distinct spatiotemporal expression patterns. Further, all six sea anemone alpha subunit subtypes are conserved in stony corals, which separated from anemones 500 MA. This unexpected conservation together with the expression patterns strongly supports the notion that these subtypes carry unique functional roles.

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Beckman, N. G., Asian, C. E., Rogers, H. S., Kogan, O., Bronstein, J. L., Bullock, J. M., Hartig, F., HilleRisLambers, J., Zhou, Y., Zurell, D., Brodie, J. F., Bruna, E. M., Cantrell, R. S., Decker, R. R., Efiom, E., Fricke, E. C., Gurski, K., Hastings, A., Johnson, J. S., Loiselle, B. A., Miriti, M. N., Neubert, M. G., Pejchar, L., Poulsen, J. R., Pufal, G., Razafindratsima, O. H., Sandor, M. E., Shea, K., Schreiber, S., Schupp, E. W., Snell, R. S., Strickland, C., & Zambrano, J. Advancing an interdisciplinary framework to study seed dispersal ecology. Aob Plants, 12(2), (2020): plz048, doi:10.1093/aobpla/plz048.

Description: Although dispersal is generally viewed as a crucial determinant for the fitness of any organism, our understanding of its role in the persistence and spread of plant populations remains incomplete. Generalizing and predicting dispersal processes are challenging due to context dependence of seed dispersal, environmental heterogeneity and interdependent processes occurring over multiple spatial and temporal scales. Current population models often use simple phenomenological descriptions of dispersal processes, limiting their ability to examine the role of population persistence and spread, especially under global change. To move seed dispersal ecology forward, we need to evaluate the impact of any single seed dispersal event within the full spatial and temporal context of a plant’s life history and environmental variability that ultimately influences a population’s ability to persist and spread. In this perspective, we provide guidance on integrating empirical and theoretical approaches that account for the context dependency of seed dispersal to improve our ability to generalize and predict the consequences of dispersal, and its anthropogenic alteration, across systems. We synthesize suitable theoretical frameworks for this work and discuss concepts, approaches and available data from diverse subdisciplines to help operationalize concepts, highlight recent breakthroughs across research areas and discuss ongoing challenges and open questions. We address knowledge gaps in the movement ecology of seeds and the integration of dispersal and demography that could benefit from such a synthesis. With an interdisciplinary perspective, we will be able to better understand how global change will impact seed dispersal processes, and potential cascading effects on plant population persistence, spread and biodiversity.

Description: Ideas for this manuscript initiated during the Seed Dispersal Workshop held in May 2016 at the Socio-Environmental Synthesis Center in Annapolis, MD and supported by the US National Science Foundation Grant DEB-1548194 to N.G.B. and the National Socio-Environmental Synthesis Center under the US National Science Foundation Grant DBI-1052875. D.Z. received funding from the Swiss National Science Foundation (SNF, grant: PZ00P3_168136/1) and from the German Science Foundation (DFG, grant: ZU 361/1-1).

Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sosa, O. A., Burrell, T. J., Wilson, S. T., Foreman, R. K., Karl, D. M., & Repeta, D. J. Phosphonate cycling supports methane and ethylene supersaturation in the phosphate-depleted western North Atlantic Ocean. Limnology and Oceanography, (2020), doi:10.1002/lno.11463.

Description: In oligotrophic ocean regions, dissolved organic phosphorus (DOP) plays a prominent role as a source of phosphorus (P) to microorganisms. An important bioavailable component of DOP is phosphonates, organophosphorus compounds with a carbon‐phosphorus (C‐P) bond, which are ubiquitous in high molecular weight dissolved organic matter (HMWDOM). In addition to being a source of P, the degradation of phosphonates by the bacterial C‐P lyase enzymatic pathway causes the release of trace hydrocarbon gases relevant to climate and atmospheric chemistry. In this study, we investigated the roles of phosphate and phosphonate cycling in the production of methane (CH4) and ethylene (C2H4) in the western North Atlantic Ocean, a region that features a transition in phosphate concentrations from coastal to open ocean waters. We observed an inverse relationship between phosphate and the saturation state of CH4 and C2H4 in the water column, and between phosphate and the relative abundance of the C‐P lyase marker gene phnJ . In phosphate‐depleted waters, methylphosphonate and 2‐hydroxyethylphosphonate, the C‐P lyase substrates that yield CH4 and C2H4, respectively, were readily degraded in proportions consistent with their abundance and bioavailability in HMWDOM and with the concentrations of CH4 and C2H4 in the water column. We conclude that phosphonate degradation through the C‐P lyase pathway is an important source and a common production pathway of CH4 and C2H4 in the phosphate‐depleted surface waters of the western North Atlantic Ocean and that phosphate concentration can be an important control on the saturation state of these gases in the upper ocean.

Description: We thank the captain and crew of the R/V Neil Armstrong and chief scientist Benjamin Van Mooy for supporting and leading research at sea. Chiara Santinelli and Eric Grabowski provided analyses of dissolved organic carbon. This research was funded by NSF Chemical Oceanography award OCE‐1634080 to D.J.R. Additional support was provided by the Gordon and Betty Moore Foundation grant 3794 to D.M.K. and grant 6000 to D.J.R., and the Simons Collaboration on Ocean Processes and Ecology (SCOPE) program grant 329108 to D.M.K., E.F.D., and D.J.R.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sakinan, S., Lawson, G. L., Wiebe, P. H., Chu, D., & Copley, N. J. Accounting for seasonal and composition-related variability in acoustic material properties in estimating copepod and krill target strength. Limnology and Oceanography-Methods, 17, (2019): 607-625, doi: 10.1002/lom3.10336.

Description: Estimation of abundance or biomass, using acoustic techniques requires knowledge of the frequency dependent acoustic backscatter characteristics, or target strength, of organisms. Target strength of zooplankton is typically estimated from physics‐based models that involve multiple parameters, notably including the acoustic material properties (i.e., the contrasts in density and sound speed between the animal and surrounding seawater). In this work, variability in the acoustic material properties of two zooplankton species in the Gulf of Maine, the copepod (Calanus finmarchicus) and krill (Meganyctiphanes norvegica), was investigated relative to changing season as well as, for the copepod, temperature and depth. Increases in the density and sound speed contrasts of these species from fall to spring were observed. Target strength predictions based on these measurements varied between fall and spring by 2‐3 dB in krill. Measurements were also conducted on C. finmarchicus lipid extract at changing temperature and pressure. The density contrast of the extract varied negatively with temperature, while the sound speed contrast changed by more than 10 % over the temperature and pressure ranges that the organism expected to occupy. C. finmarchicus target strength predictions showed that the combined effect of temperature and pressure can be significant (more than 10 dB) due to the varying response of lipids. The large vertical migration ranges and lipid accumulation characteristics of these species (e.g., the diapause behaviour of Calanus copepods) suggest that it is necessary for seasonal and environmental variability in material properties to be taken into account to achieve reliable measurements.

Description: We thank Captain Ken Houtler and Mate Ian Hanley on the R/V Tioga for assistance at sea. Al Bradley kindly loaned and provided assistance with the pressure chamber. We would also like to thank Phil Alatalo and Taylor Crockford for their assistance with at‐sea sampling, Dave Kulis and Jennifer Johnson for their assistance in the laboratory, and Andone Lavery for advice and loaning of the data acquisition system. Special thanks to Alex Bergan for general logistics and overall support. Funding was provided by the WHOI Ocean Life Institute. S.S. was supported by TUBITAK 2219 ‐ International Postdoctoral Research Fellowship Program.