ALBERT

Description: Using a portable gas analyzer system, the geogenic gas regime below and around an ancient gate to hell at Hierapolis/Phrygia was characterized. The site was first described by Strabo and Plinius as a gate to the underworld. During centuries, it attracted even ancient tourists. In a grotto below the temple of Pluto, CO2 was found to be at deadly concentrations of up to 91%. Astonishingly, these vapors are still emitted in concentrations that nowadays kill insects, birds, and mammals. The concentrations of CO2 escaping from the mouth of the grotto to the outside atmosphere are still in the range of 4–53% CO2 depending on the height above ground level. They reach concentrations during the night that would easily kill even a human being within a minute. These emissions are thought to reflect the Hadean breath and/or the breath of the hellhound Kerberos guarding the entrance to hell. The origin of the geogenic CO2 is the still active seismic structure that crosses the old town of ancient Hierapolis as part of the Babadag fracture zone. Our measurements confirm the presence of geogenic CO2 in concentrations that explain ancient stories of killed bulls, rams, and songbirds during religious ceremonies. They also strongly corroborate that at least in the case of Hierapolis, ancient writers like Strabo or Plinius described a mystic phenomenon very exactly without much exaggeration. Two thousand years ago, only supernatural forces could explain these phenomena from Hadean depths whereas nowadays, modern techniques hint to the well-known phenomenon of geogenic CO2 degassing having mantle components with relatively higher helium and radon concentrations.

Description: Polynoidae contains ~900 species within 18 subfamilies, some of them restricted to the deep sea. Macellicephalinae is the most diverse among these deep-sea subfamilies. In the abyssal Equatorial Pacific Ocean, the biodiversity of benthic communities is at stake in the Clarion-Clipperton Fracture Zone (CCFZ) owing to increased industrial interest in polymetallic nodules. The records of polychaetes in this region are scarce. Data gathered during the JPI Oceans cruise SO239 made a significant contribution to fill this gap, with five different localities sampled between 4000 and 5000 m depth. Benthic samples collected using an epibenthic sledge or a remotely operated vehicle resulted in a large collection of polynoids. The aims of this study are as follows: (1) to describe new species of deep-sea polynoids using morphology and molecular data (COI, 16S and 18S); and (2) to evaluate the monophyly of Macellicephalinae. Based on molecular and morphological phylogenetic analyses, ten subfamilies are synonymized with Macellicephalinae in order to create a homogeneous clade determined by the absence of lateral antennae. Within this clade, the Anantennata clade was well supported, being determined by the absence of a median antenna. Furthermore, 17 new species and four new genera are described, highlighting the high diversity hidden in the deep. A taxonomic key for the 37 valid genera of the subfamily Macellicephalinae is provided.

Description: Continental rifting and ocean basin formation can be observed at the present day in the Red Sea, which is used as the modern analogue for the formation of mid-ocean ridges. Competing theories for how spreading begins—either by quasi-instantaneous formation of a whole spreading segment or by initiation of spreading at multiple discrete “nodes” separated by thinned continental lithosphere—have been put forward based, until recently, on the observations that many seafloor features and geophysical anomalies (gravity, magnetics) along the axis of the Red Sea appeared anomalous compared to ancient and modern examples of ocean basins in other parts of the world. The latest research shows, however, that most of the differences between the Red Sea Rift (RSR) and other (ultra)slow-spreading mid-ocean ridges can be related to its relatively young age and the presence and movement of giant submarine salt flows that blanket large portions of the rift valley. In addition, the geophysical data that was previously used to support the presence of continental crust between the axial basins with outcropping oceanic crust (formerly named “spreading nodes”) can be equally well explained by processes related to the sedimentary blanketing and hydrothermal alteration. The observed spreading nodes are not separated from one another by tectonic boundaries but rather represent “windows” onto a continuous spreading axis which is locally inundated and masked by massive slumping of sediments or evaporites from the rift flanks. Volcanic and tectonic morphologies are comparable to those observed along slow and ultra-slow spreading ridges elsewhere and regional systematics of volcanic occurrences are related to variations in volcanic activity and mantle heat flow. Melt-salt interaction due to salt flows, that locally cover the active spreading segments, and the absence of large detachment faults as a result of the nearby Afar plume are unique features of the RSR. The differences and anomalies seen in the Red Sea still may be applicable to all young oceanic rifts, associated with plumes and/or evaporites, which makes the Red Sea a unique but highly relevant type example for the initiation of slow rifting and seafloor spreading and one of the most interesting targets for future ocean research.

Description: Coral reefs in the Red Sea belong to the most diverse and productive reef ecosystems worldwide, although they are exposed to strong seasonal variability, high temperature, and high salinity. These factors are considered stressful for coral reef biota and challenge reef growth in other oceans, but coral reefs in the Red Sea thrive despite these challenges. In the central Red Sea high temperatures, high salinities, and low dissolved oxygen on the one hand reflect conditions that are predicted for ‘future oceans’ under global warming. On the other hand, alkalinity and other carbonate chemistry parameters are considered favourable for coral growth. In coral reefs of the central Red Sea, temperature and salinity follow a seasonal cycle, while chlorophyll and inorganic nutrients mostly vary spatially, and dissolved oxygen and pH fluctuate on the scale of hours to days. Within these strong environmental gradients micro- and macroscopic reef communities are dynamic and demonstrate plasticity and acclimatisation potential. Epilithic biofilm communities of bacteria and algae, crucial for the recruitment of reef-builders, undergo seasonal community shifts that are mainly driven by changes in temperature, salinity, and dissolved oxygen. These variables are predicted to change with the progression of global environmental change and suggest an immediate effect of climate change on the microbial community composition of biofilms. Corals are so-called holobionts and associate with a variety of microbial organisms that fulfill important functions in coral health and productivity. For instance, coral-associated bacterial communities are more specific and less diverse than those of marine biofilms, and in many coral species in the central Red Sea they are dominated by bacteria from the genus Endozoicomonas. Generally, coral microbiomes align with ecological differences between reef sites. They are similar at sites where these corals are abundant and successful. Coral microbiomes reveal a measurable footprint of anthropogenic influence at polluted sites. Coral-associated communities of endosymbiotic dinoflagellates in central Red Sea corals are dominated by Symbiodinium from clade C. Some corals harbour the same specific symbiont with a high physiological plasticity throughout their distribution range, while others maintain a more flexible association with varying symbionts of high physiological specificity over depths, seasons, or reef locations. The coral-Symbiodinium endosymbiosis drives calcification of the coral skeleton, which is a key process that provides maintenance and formation of the reef framework. Calcification rates and reef growth are not higher than in other coral reef regions, despite the beneficial carbonate chemistry in the central Red Sea. This may be related to the comparatively high temperatures, as indicated by reduced summer calcification and long-term slowing of growth rates that correlate with ocean warming trends. Indeed, thermal limits of abundant coral species in the central Red Sea may have been exceeded, as evidenced by repeated mass bleaching events during previous years. Recent comprehensive baseline data from central Red Sea reefs allow for insight into coral reef functioning and for quantification of the impacts of environmental change in the region.

Description: The Laptev and Eastern Siberian shelves are the world’s broadest shallow shelf systems. Large Siberian rivers and coastal erosion of up to meters per summer deliver large volumes of terrestrial matter into the Arctic shelf seas. In this chapter we investigate the applicability of Ocean Colour Remote Sensing during the ice-free summer season in the Siberian Laptev Sea region. We show that the early summer river peak discharge may be traced using remote sensing in years characterized by early sea-ice retreat. In the summer time after the peak discharge, the spreading of the main Lena River plume east and north-east of the Lena River Delta into the shelf system becomes hardly traceable using optical remote sensing methods. Measurements of suspended particulate matter (SPM) and coloured dissolved organic matter (cDOM) are of the same magnitude in the coastal waters of Buor Khaya Bay as in the Lena River. Match-up analyses of in situ chlorophyll-a (Chl-a) show that standard Medium Resolution Imaging Spectrometer (MERIS) and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite-derived Chl-a is not a valid remote sensing product for the coastal waters and the inner shelf region of the Laptev Sea. All MERIS and MODIS-derived Chl-a products are overestimated by at least a factor of ten, probably due to absorption by the extraordinarily high amount of non-algal particles and cDOM in these coastal and inner-shelf waters. Instead, Ocean Colour remote sensing provides information on wide-spread resuspension over shallows and lateral advection visible in satellite-derived turbidity. Satellite Sea Surface Temperature (SST) data clearly show hydrodynamics and delineate the outflow of the Lena River for hundreds of kilometres out into the shelf seas.

Description: The size of current plankton image datasets renders manual classification virtually infeasible. The training of models for machine classification is complicated by the fact that a large number of classes consist of only a few examples. We employ the recently introduced weight imprinting technique in order to use the available training data to train accurate classifiers in absence of enough examples for some classes. The model architecture used in this work succeeds in the identification of plankton using machine learning with its unique challenges, i.e. a limited number of training examples and a severely skewed class size distribution. Weight imprinting enables a neural network to recognize small classes immediately without re-training. This permits the mining of examples for novel classes.

Description: All around the world, beneath the seafloor, there are huge volumes of natural gas. But these are not the normal gas reservoirs that we collect to use for cooking, heating our homes, and making electricity in power stations. This gas is locked up in what we call gas hydrates. Gas hydrates are a solid form of water, rather like ice, that contains gas molecules locked up in a “cage” of water molecules. Gas hydrates are found on continental shelves around the world and in permafrost in the arctic. We are interested in gas hydrates because they could be used as a future source of natural gas. They are also important because they can cause large landslides on the seafloor, damaging offshore pipelines and cables and contributing to the formation of tsunami waves.

Description: This review article aims to provide an overview and insight into the most relevant aspects of wind energy development and current state-of-the-art. The industry is in a very mature stage, so it seems to be the right time to take stock of the relevant areas of wind energy use for power generation. For this review, the authors considered the essential aspects of the development of wind energy technology: research, modeling, and prediction of wind speed as an energy source, the technology development of the plants divided into the mechanical and electrical systems and the plant control, and finally the optimal plant operation including the maintenance strategies. The focus is on the development in Europe, with a partial focus on Germany. The authors are employees of the Fraunhofer Institutes, Institute for Energy Economics and Energy Systems Technology and Institute for Wind Energy Systems, who have contributed to the development of this technology for decades.

Description: The Alpine orogeny is well recorded onshore and offshore by tectonic inversion of the Mesozoic rift basins. Large scale linear seamounts (more than 250 km long and with up to 5 km of uplift) involving oceanic and continental lithosphere were carried on top of thrusts, such as the Gorringe seamount and the Estremadura Spur in the SouthWest and West Iberia Margin, respectively. The SouthWest Iberia Margin also recorded the westward migration of the Gibraltar Oceanic slab as the westwards propagation of the Neo-Tethys subduction. Rotation of the tectonic compression from NW-SE to WNW-ESE inPliocene times caused the development of large scale dextral wrench faults as the present day Africa-Iberia plate boundary. Neotectonics of this plate boundary caused large to mega-scale destructive earthquakes and tsunamis.

Description: Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous sediments) to predict where hydrothermal venting or now inactive hydrothermal vent fields can be expected. Sites of particular interest for future hydrothermal research are the Mabahiss Deep, the Thetis-HadarbaHatiba Deeps and Shagara-Aswad-Erba Deeps (especially their large axial domes), and Poseidon Deep. Older hydrothermal vent fields may be present at the Nereus and Suakin Deeps. These sites significantly increase the potential of hydrothermal vent field prospection in the Red Sea.

Description: The deep-sea brines of the Red Sea are unusual extreme environments and form characteristically steep gradients across the brine-seawater interfaces. Due to their unusual nature and unique combination of physical-chemical conditions these interfaces provide an interesting source of new findings in the fields of geochemistry, geology, microbiology, biotechnology, virology, and general biology. The current chapter summarizes recent and new results in the study of geochemistry and life at the interfaces of brine-filled deeps of the Red Sea.

Description: Metabolites give us a window into the chemistry of microbes and are split into two subclasses: primary and secondary. Primary metabolites are required for life whereas secondary metabolites have historically been classified as those appearing after exponential growth and are not necessarily needed for survival. Many microbial species are estimated to produce hundreds of metabolites and can be affected by differing nutrients. Using various analytical techniques, metabolites can be directly detected in order to elucidate their biological significance. Currently, a single experiment can produce anywhere from megabytes to terabytes of data. This big data has motivated scientists to develop informatics tools to help target specific metabolites or sets of metabolites. Broadly, it is imperative to identify clear biological questions before embarking on a study of metabolites (metabolomics). For instance, studying the effect of a transposon insertion on phenazine biosynthesis in Pseudomonas is a very different from asking what molecules are present in a specific banana-derived strain of Pseudomonas. This review is meant to serve as a primer for a ‘choose your own adventure’ approach for microbiologists with limited mass spectrometry expertise, with a strong focus on liquid chromatography mass spectrometry based workflows developed or optimized within the past five years.

Description: Did you know that we have better maps of the moon, Mars, and Venus than we do of the seafloor on Earth? Since oceans cover 71% of the Earth’s surface, understanding what the seafloor looks like, and where different processes, such as ocean currents are active, is hugely important. Mapping the seafloor helps us to work out things like where different types of fish live, where we might find resources, such as rare metals and fossil fuels, and whether there is a risk of underwater landslides happening that might cause a tsunami. Mapping the seafloor is very challenging, because we cannot use the same techniques that we would use on land. To map the deep ocean, we use a tool called a multibeam echo-sounder, which is attached to a ship or a submarine vessel.

Description: This paper addresses visual navigation of autonomous underwater vehicles (AUVs) with and without a given map, where the latter is called Simultaneous Localization and Mapping (SLAM). We summarize the challenges and opportunities in underwater environments that make visual navigation different from land navigation and also briefly survey the current state-of-the-art in this area. Then as a position paper we argue why many of these challenges could be met by a proper modeling of uncertainties in the SLAM representation. This would in particular allow the SLAM algorithm to thoroughly handle the ambiguity between “I see the same feature again.”, “I see a different but similar looking feature.” and “The environment has changed and the feature moved.”.

Description: Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available. © 2018 International Society of Protistologists

Description: Spores of the dinoflagellate Chytriodinium are known to infest copepod eggs causing their lethality. Despite the potential to control the population of such an ecologically important host, knowledge about Chytriodinium parasites is limited: we know little about phylogeny, parasitism, abundance, or geographical distribution. We carried out genome sequence surveys on four manually isolated sporocytes from the same sporangium, which seemed to be attached to a copepod nauplius, to analyze the phylogenetic position of Chytriodinium based on SSU and concatenated SSU/LSU rRNA gene sequences, and also characterize two genes related to the plastidial heme pathway, hemL and hemY. The results suggest the presence of a cryptic plastid in Chytriodinium and a photosynthetic ancestral state of the parasitic Chytriodinium/Dissodinium clade. Finally, by mapping Tara Oceans V9 SSU amplicon data to the recovered SSU rRNA gene sequences from the sporocytes, we show that globally, Chytriodinium parasites are most abundant within the pico/nano- and mesoplankton of the surface ocean and almost absent within microplankton, a distribution indicating that they generally exist either as free-living spores or host-associated sporangia. © 2018 International Society of Protistologists

Description: The application of acoustic techniques, such as multibeam echosounders, has permitted the identification of Maltese submarine landscapes and landforms that were progressively inundated during the postglacial sea-level rise. Remarkably, geomorphological features due to fluvial, gravity-induced and karst processes that took place under former subaerial conditions can be clearly recognised on the present seafloor around the Maltese archipelago, and they were only slightly modified by sea action during the postglacial transgression phases. The analysis of the submerged landforms described in this chapter is crucial for understanding the evolution of the Maltese Islands during the last ca. 20,000 years.

Description: The study presents the results of continuous measurements of carbon dioxide concentration in the atmospheric surface layer at Tiksi and Cape Baranov Arctic stations over the period of August 2010–May 2017 and over the whole 2016, respectively. The amplitude of diurnal variations in the CO2 concentration in Tiksi from June to September is 1.1 ± 1.3, 2.4 ± 2.0, 4.1 ± 2.3, and 2.0 ± 2.4 ppm. Diurnal variations in CO2 at Cape Baranov station are absent. The observed seasonal variations in the CO2 concentration are compared with the data of the MBL empirical model for the marine atmospheric boundary layer of the Arctic region. In 2016, the difference between the observed and model concentrations at Tiksi and Cape Baranov stations amounted to 1.7 and 0.5 ppm, respectively, in winter and −3.0 and −1.9 ppm, respectively, in summer. It is shown that wildfires in Siberia caused a long synchronous increase in the CO2 concentration by 20 ppm in Tiksi and by 15 ppm at Cape Baranov station.

Description: The water of Atlantic origin (Atlantic water) is of special importance for the formation of the hydrological regime of the Arctic Ocean and provides a “building material” for the main water masses in the surface and intermediate layers. Atlantic water are structurally included to the Arctic Transpolar System (ATS); it is a multicomponent physical object whose state defines the role of the Arctic Ocean in the planetary climate. The recent advances in the Atlantic water research are discussed, in particular, the role of Atlantic water in the Arctic sea ice reduction. Particular attention is paid to the possible activation of feedbacks in ATS that may result in an accelerated Arctic sea ice loss recorded after 2007.

Description: Three most common Arctic foraminiferal species of the family Cassidulinidae from the Laptev Sea sediment cores were analyzed for paleoenvironmental reconstructions. This paleontological study is focused on morphological characteristics of apertural elements and the wall structure. The species Cassidulina neoteretis is considered an indicator of the Atlantic influence in contrast to the Arctic species Cassidulina reniforme and Islandiella norcrossi.

Description: The ecology and taxonomy of Islandiella norcrossi (Cushman, 1933), a typical representative of the Arctic calcareous benthic foraminifers, are analyzed based on microfossils from the Late Pleistocene-Holocene deposits of the Laptev Sea. This species is distributed on the shelf and continental slope of the Arctic seas, and indicates normal marine conditions with a seasonal ice cover and cold Arctic water masses. The species is also associated with a high seasonal productivity in sea-ice marginal zone. Tests are abundant in the Laptev Sea sediments, and show some variability in the size and shape of chambers, which was possibly caused by harsh environmental conditions of the Arctic (limited period of growth and reproduction); aberrant forms with an additional aperture being also present. The population contains tests of macrospherical and microspherical generations, as well as juveniles.

Description: Marine prey and predators will respond to future climate through physiological and behavioral adjustments. However, our understanding of how such direct effects may shift the outcome of predator–prey interactions is still limited. Here, we investigate the effects of ocean warming and acidification on foraging behavior and biomass of a common prey (shrimps, Palaemon spp.) tested in large mesocosms harboring natural resources and habitats. Acidification did not alter foraging behavior in prey. Under warming, however, prey showed riskier behavior by foraging more actively and for longer time periods, even in the presence of a live predator. No effects of longer-term exposure to climate stressors were detected on prey biomass. Our findings suggest that ocean warming may increase the availability of some prey to predators via a behavioral pathway (i.e., increased risk-taking by prey), likely by elevating metabolic demand of prey species.

Description: The last extended time period when climate may have been warmer than today was during the Last Interglacial (LIG; ca. 129 to 120 thousand years ago). However, a global view of LIG precipitation is lacking. Here, seven new LIG climate models are compared to the first global database of proxies for LIG precipitation. In this way, models are assessed in their ability to capture important hydroclimatic processes during a different climate. The models can reproduce the proxy-based positive precipitation anomalies from the preindustrial period over much of the boreal continents. Over the Southern Hemisphere, proxy-model agreement is partial. In models, LIG boreal monsoons have 42% wider area than in the preindustrial and produce 55% more precipitation and 50% more extreme precipitation. Austral monsoons are weaker. The mechanisms behind these changes are consistent with stronger summer radiative forcing over boreal high latitudes and with the associated higher temperatures during the LIG.

Description: Climate change influences the Baltic Sea ecosystem via its effects on oceanography and biogeochemistry. Sea surface temperature has been projected to increase by 2 to 4 °C until 2100 due to global warming; the changes will be more significant in the northern areas and less so in the south. The warming up will also diminish the annual sea ice cover by 57% to 71%, and ice season will be one to three months shorter than in the early 21st century, depending on latitude. A significant decrease in sea surface salinity has been projected because of an increase in rainfall and decrease of saline inflows into the Baltic Sea. The increasing surface flow has, in turn, been projected to increase leaching of nutrients from the soil to the watershed and eventually into the Baltic Sea. Also, acidification of the seawater and sea-level rise have been predicted. Increasing seawater temperature speeds up metabolic processes and increases growth rates of many secondary producers. Species associated with sea ice, from salt brine microbes to seals, will suffer. Due to the specific salinity tolerances, species’ geographical ranges may shift by tens or hundreds of kilometres with decreasing salinity. A decrease in pH will slow down calcification of bivalve shells, and higher temperatures also alleviate establishment of non-indigenous species originating from more southern sea areas. Many uncertainties still remain in predicting the couplings between atmosphere, oceanography and ecosystem. Especially projections of many oceanographic parameters, such as wind speeds and directions, the mean salinity level, and density stratification, are still ambiguous. Also, the effects of simultaneous changes in multiple environmental factors on species with variable preferences to temperature, salinity, and nutrient conditions are difficult to project. There is, however, enough evidence to claim that due to increasing runoff of nutrients from land and warming up of water, primary production and sedimentation of organic matter will increase; this will probably enhance anoxia and release of phosphorus from sediments. Such changes may keep the Baltic Sea in an eutrophicated state for a long time, unless strong measures to decrease nutrient runoff from land are taken. Changes in the pelagic and benthic communities are anticipated. Benthic communities will change from marine to relatively more euryhaline communities and will suffer from hypoxic events. The projected temperature increase and salinity decline will contribute to maintain the pelagic ecosystem of the Central Baltic and the Gulf of Finland in a state dominated by cyanobacteria, flagellates, small-sized zooplankton and sprat, instead of diatoms, large marine copepods, herring, and cod. Effects vary from area to area, however. In particular the Bothnian Sea, where hypoxia is less common and rivers carry a lot of dissolved organic carbon, primary production will probably not increase as much as in the other basins. The coupled oceanography-biogeochemistry ecosystem models have greatly advanced our understanding of the effects of climate change on marine ecosystems. Also, studies on climate associated “regime shifts” and cascading effects from top predators to plankton have been fundamental for understanding of the response of the Baltic Sea ecosystem to anthropogenic and climatic stress. In the future, modeling efforts should be focusing on coupling of biogeochemical processes and lower trophic levels to the top predators. Also, fine resolution species distribution models should be developed and combined with 3-D modelling, to describe how the species and communities are responding to climate-induced changes in environmental variables.

Description: Dome ports act as spherical windows in underwater housings through which a camera can observe objects in the water. As compared to flat glass interfaces, they do not limit the field of view, and they do not cause refraction of light observed by a pinhole camera positioned exactly in the center of the dome. Mechanically adjusting a real lens to this position is a challenging task, in particular for those integrated in deep sea housings. In this contribution a mechanical adjustment procedure based on straight line observations above and below water is proposed that allows for accurate alignments. Additionally, we show a chessboard-based method employing an underwater/above-water image pair to estimate potentially remaining offsets from the dome center to allow refraction correction in photogrammetric applications. Besides providing intuition about the severity of refraction in certain settings, we demonstrate the methods on real data for acrylic and glass domes in the water.

Description: Heteroplasmy occurs when copies of an organellar genome (plastid or mitochondrial) differ from one another either within a cell or among cells within an individual. This phenomenon was first discovered in plastids over 100 years ago, though ‘heteroplasmy’ was not formally defined until decades later. Mitochondrial and plastid heteroplasmy have since been discovered in diverse taxa, including numerous plants, particularly those with the gynodioecious breeding system. Though heteroplasmy can arise through mutations in organellar genomes, biparental inheritance of organelles often generates heteroplasmy. This article is intended to summarise the cytoploid nature of organellar genomes and different aspects of mitochondrial and plastid heteroplasmy, from its discovery, to the development of detection methods. We will also discuss the effects of heteroplasmy on individuals, populations, and species, with regard to fitness, cytonuclear interactions, and genome evolution. Finally, we highlight a few research questions which we consider in need of further investigation to understand the prevalence and effects of heteroplasmy in natural settings.

Description: We discuss the results of measurements in the region of Cape Baranov (the Severnaya Zemlya archipelago) of the set of physicochemical characteristics of atmospheric aerosol: aerosol optical depth, aerosol and black carbon concentrations, elemental and ion compositions of aerosol, organic and elemental carbon contents in aerosol, as well as the isotopic composition of carbon in the aerosol and snow samples. It is shown that the average values of most aerosol characteristics, measured in April–June 2018, are a little lower than in the Arctic settlement Barentsburg (Spitsbergen archipelago) and several-fold smaller than in the south of Western Siberia in the same period.

Description: Plastic has become indispensable for human life. When plastic debris is discarded into waterways, these items can interact with organisms. Of particular concern are microscopic plastic particles (microplastics) which are subject to ingestion by several taxa. This review summarizes the results of cutting-edge research about the interactions between a range of aquatic species and microplastics, including effects on biota physiology and secondary ingestion. Uptake pathways via digestive or ventilatory systems are discussed, including (1) the physical penetration of microplastic particles into cellular structures, (2) leaching of chemical additives or adsorbed persistent organic pollutants (POPs), and (3) consequences of bacterial or viral microbiota contamination associated with microplastic ingestion. Following uptake, a number of individual-level effects have been observed, including reduction of feeding activities, reduced growth and reproduction through cellular modifications, and oxidative stress. Microplastic-associated effects on marine biota have become increasingly investigated with growing concerns regarding human health through trophic transfer. We argue that research on the cellular interactions with microplastics provide an understanding of their impact to the organisms’ fitness and, therefore, its ability to sustain their functional role in the ecosystem. The review summarizes information from 236 scientific publications. Of those, only 4.6% extrapolate their research of microplastic intake on individual species to the impact on ecosystem functioning. We emphasize the need for risk evaluation from organismal effects to an ecosystem level to effectively evaluate the effect of microplastic pollution on marine environments. Further studies are encouraged to investigate sublethal effects in the context of environmentally relevant microplastic pollution conditions.

Description: Stable carbon isotopes of sediment organic matter (δ13COM) are widely applied in paleoenvironmental studies. Interpretations of δ13COM, however, remain challenging and factors that influence δ13COM may not apply across all lakes. Common explanations for stratigraphic shifts in δ13COM include changes in lake productivity or changes in inputs of allochthonous OM. We investigated the influence of different oxygen conditions (oxic versus anoxic) on the δ13COM values in the sediments of Lake Tiefer See. We analysed (1) a long sediment core from the deepest part of the lake, (2) two short, sediment–water interface cores from shallower water depths, and (3) OM in the water column, i.e. from sediment traps. Fresh OM throughout the entire water column showed a relatively constant δ13COM value of approximately − 30.5‰. Similar values, about − 31‰, were obtained for well-varved sediments in both the long and short, sediment–water interface cores. In contrast, δ13COM values from non-varved sediments in all cores were significantly less negative (− 29‰). The δ13COM values in the sediment–water interface cores from different water depths differ for sediments of the same age, if oxygen conditions at the time of deposition were different at these sites, as suggested by the state of varve preservation. Sediments deposited from AD 1924 to 1980 at 62 m water depth are varved and exhibit δ13COM values around − 31‰, whereas sediments of the same age in the core from 35 m water depth are not varved and show less negative δ13COM values of about − 29‰. The relation between varve occurrence and δ13COM values suggests that δ13COM is associated with oxygen conditions because varve preservation depends on hypolimnetic anoxia. A mechanism that likely influences δ13COM is selective degradation of OM under oxic conditions, such that organic components with more negative δ13COM are preferably decomposed, leading to less negative δ13COM values in the remaining, undegraded OM pool. Greater decomposition of OM in non-varved sediments is supported by lower TOC concentrations in these deposits (~ 5%) compared to well-varved sediments (~ 15%). Even in lakes that display small variations in productivity and terrestrial OM input through time, large spatial and temporal differences in hypolimnetic oxygen concentrations may be an important factor controlling sediment δ13COM.

Description: Variations in Earth’s orbit pace the glacial-interglacial cycles of the Quaternary, but the mechanisms that transform regional and seasonal variations in solar insolation into glacial-interglacial cycles are still elusive. Here, we present transient simulations of coevolution of climate, ice sheets, and carbon cycle over the past 3 million years. We show that a gradual lowering of atmospheric CO2 and regolith removal are essential to reproduce the evolution of climate variability over the Quaternary. The long-term CO2 decrease leads to the initiation of Northern Hemisphere glaciation and an increase in the amplitude of glacial-interglacial variations, while the combined effect of CO2 decline and regolith removal controls the timing of the transition from a 41,000- to 100,000-year world. Our results suggest that the current CO2 concentration is unprecedented over the past 3 million years and that global temperature never exceeded the preindustrial value by more than 2°C during the Quaternary.

Description: In den tropischen und subtropischen Meeren existieren in mittleren Tiefen riesige sauerstoffarme Zonen. Im Zuge des Klimawandels dehnen sie sich immer stärker aus. Auch in Küstenregionen entstehen durch Stickstoffbelastung aus der Landwirtschaft lebensfeindliche Zonen ohne Sauerstoff – mit verheerenden Folgen für das marine Ökosystem.

Description: The invasive round goby has established a viable population within 9 years of its first introduction to Lithuanian coastal waters (SE Baltic Sea). During its expansion phase, abundances increased 23-fold, which led to the near complete eradication of its main prey, the blue mussel, at 〈 20 m depth. The round goby population showed a stabilizing trend after blue mussel biomass was depleted; however, their abundance has not declined. The round goby feeds efficiently on newly settled mollusks, causing a severe constraint for blue mussel recovery. Changes in blue mussel availability and size structure induced a dietary shift in wintering long-tailed duck towards fish prey. An energetically dense food source sustains a good body condition in long-tailed ducks, however the change in trophic position (from 3.1 to 4.3 trophic level) suggests the potential for a reduction in their carrying capacity. Results from this study also show that coastal habitats with low and unpredictable population dynamics of blue mussel become less attractive wintering sites for long-tailed duck in the Baltic Sea. We also document a cascading effect of invasive species in the food web.

Description: We introduce a new parallelizable numerical multiscale method for advection-dominated problems as they often occur in engineering and geosciences. State of the art multiscale simulation methods work well in situations in which stationary and elliptic scenarios prevail but are prone to fail when the model involves dominant lower order terms which is common in applications. We suggest to overcome the associated difficulties through a reconstruction of subgrid variations into a modified basis by solving many independent (local) inverse problems that are constructed in a semi-Lagrangian step. Globally the method looks like a Eulerian method with multiscale stabilized basis. The method is extensible to other types of Galerkin methods, higher dimensions, nonlinear problems and can potentially work with real data. We provide examples inspired by tracer transport in climate systems in one and two dimensions and numerically compare our method to standard methods.

Description: Natural polysaccharides of marine origin are gaining interest in biomedical applications. Seaweeds are most abundant source of polysaccharides, as alginates, agar and agarose as well as Carrageenans. Even cellulose and amylose have been extracted from the macroalgae. Chitin and chitosan are derived from the exoskeleton of marine crustaceans. Interdisciplinary fields involving various science and technology aspects such as cell sciences, biomaterials, medical sciences and engineering are referred to as tissue engineering, which is an upcoming new field intended to replace biological functions in human body. Tissue engineered scaffolds and artificial organs developed by such technique has replace injured parts in human body. Technological advancements have made it possible to obtain active ingredient in marine organisms by controlling the growth and isolation conditions. Present review has focused on progress in discovering and producing new applications of marine polysaccharides in biomedical and tissue engineering.

Description: Although narrow‐azimuth towed‐streamer data provides good image quality for structural interpretation, it is generally accepted that for wide‐azimuth marine surveys seabed receivers deliver superior seismic reflection measurements and seismically derived reservoir attributes. However, seabed surveys are not widely used due to the higher acquisition costs when compared to streamer acquisition. In recent years, there have been significant engineering efforts to automate receiver deployment and retrieval in order to minimize the cost differential and conduct cost‐efficient seabed receiver seismic surveys. These engineering efforts include industrially engineered nodes, nodes‐on‐a‐rope deployment schemes and even robotic nodes, which swim to and from the deployment location. This move to automation is inevitable, leading to robotization of seismic data acquisition for exploration and development activities in the oil and gas industry. We are developing a robotic‐based technology, which utilizes autonomous underwater vehicles as seismic sensors without the need of using a remotely operated vehicle for deployment and retrieval. In this paper, we describe the autonomous underwater vehicle evolution throughout the project years from initial heavy and bulky nodes to fully autonomous light and flexible underwater receivers. Results obtained from two field pilot tests using different generations of autonomous underwater vehicles indicate that the seismic coupling, and navigation based on underwater acoustics are very reliable and robust.

Description: Regional climate modeling bridges the gap between the coarse resolution of current global climate models and the regional-to-local scales, where the impacts of climate change are of primary interest. Here, we present a review of the added value of the regional climate modeling approach within the scope of paleoclimate research and discuss the current major challenges and perspectives. Two time periods serve as an example: the Holocene, including the Last Millennium, and the Last Glacial Maximum. Reviewing the existing literature reveals the benefits of regional paleo climate modeling, particularly over areas with complex terrain. However, this depends largely on the variable of interest, as the added value of regional modeling arises from a more realistic representation of physical processes and climate feedbacks compared to global climate models, and this affects different climate variables in various ways. In particular, hydrological processes have been shown to be better represented in regional models, and they can deliver more realistic meteorological data to drive ice sheet and glacier modeling. Thus, regional climate models provide a clear benefit to answer fundamental paleoclimate research questions and may be key to advance a meaningful joint interpretation of climate model and proxy data.

Description: A marine seismic method based on continuous source and receiver wavefields has been developed. The method requires continuous recording of the seismic data. The source that may consist of multiple source elements can emit signals continuously while moving. The ideal source wavefield to be used with this method should be as white as possible both in a temporal and a spatial sense to avoid deep notches in the spectrum enabling a stable multi‐dimensional deconvolution. White noise has such properties. However, equipment that can generate white noise does not exist. In order to generate a continuous source wavefield that is approaching the properties of white noise using existing equipment onboard marine seismic vessels, individual air‐guns can be triggered with short randomized time intervals in a near‐continuous fashion. The main potential benefits with the method are to reduce the environmental impact of marine seismic surveys and to improve acquisition efficiency. The peak sound pressure levels are significantly reduced by triggering one air‐gun at a time compared to conventional marine seismic sources. Sound exposure levels are also reduced in most directions. Since the method is based on continuous recording of seismic data and the air‐guns are triggered based on time and not based on position, there are less vessel speed limitations compared to conventional marine seismic data acquisition. Also, because the source wavefield is spread out in time, the wavefields emitted from source elements in different cross‐line positions can be designed such that the emitted wavefield is spatially white in this direction. This means that source elements in multiple cross‐line positions can be operated simultaneously, potentially improving the cross‐line sampling and/or the acquisition efficiency.

Description: This review shows that the presence of seagrass microbial community is critical for the development of seagrasses; from seed germination, through to phytohormone production and enhanced nutrient availability, and defence against pathogens and saprophytes. The tight seagrass-bacterial relationship highlighted in this review supports the existence of a seagrass holobiont and adds to the growing evidence for the importance of marine eukaryotic microorganisms in sustaining vital ecosystems. Incorporating a micro-scale view on seagrass ecosystems substantially expands our understanding of ecosystem functioning and may have significant implications for future seagrass management and mitigation against human disturbance.

Description: Differences in habitat and diet between species are often associated with morphological differences. Habitat and trophic adaptation have therefore been proposed as important drivers of speciation and adaptive radiation. Importantly, habitat and diet shifts likely impose changes in exposure to different parasites and infection risk. As strong selective agents influencing survival and mate choice, parasites might play an important role in host diversification. We explore this possibility for the adaptive radiation of Lake Tanganyika (LT) cichlids. We first compare metazoan macroparasites infection levels between cichlid tribes. We then describe the cichlids’ genetic diversity at the major histocompatibility complex (MHC), which plays a key role in vertebrate immunity. Finally, we evaluate to what extent trophic ecology and morphology explain variation in infection levels and MHC, accounting for phylogenetic relationships. We show that different cichlid tribes in LT feature partially non-overlapping parasite communities and partially non-overlapping MHC diversity. While morphology explained 15% of the variation in mean parasite abundance, trophic ecology accounted for 16% and 22% of the MHC variation at the nucleotide and at the amino acid level, respectively. Parasitism and immunogenetic adaptation may thus add additional dimensions to the LT cichlid radiation.

Description: Common problems in state-of-the-art climate models are a cold sea surface temperature (SST) bias in the equatorial Pacific and the underestimation of the two most important atmospheric feedbacks operating in the El Niño/Southern Oscillation (ENSO): the positive, i.e. amplifying wind-SST feedback and the negative, i.e. damping heat flux-SST feedback. To a large extent, the underestimation of those feedbacks can be explained by the cold equatorial SST bias, which shifts the rising branch of the Pacific Walker Circulation (PWC) too far to the west by up to 30°, resulting in an erroneous convective response during ENSO events. Based on simulations from the Kiel Climate Model (KCM) and the 5th phase of Coupled Model Intercomparison Project (CMIP5), we investigate how well ENSO dynamics are simulated in case of underestimated ENSO atmospheric feedbacks (EAF), with a special focus on ocean–atmosphere coupling over the equatorial Pacific. While models featuring realistic atmospheric feedbacks simulate ENSO dynamics close to observations, models with underestimated EAF exhibit fundamental biases in ENSO dynamics. In models with too weak feedbacks, ENSO is not predominantly wind-driven as observed; instead ENSO is driven significantly by a positive shortwave radiation feedback. Thus, although these models simulate ENSO, which in terms of simple indices is consistent with observations, it originates from very different dynamics. A too weak oceanic forcing on the SST via the positive thermocline, the Ekman and the zonal advection feedback is compensated by weaker atmospheric heat flux damping. The latter is mainly caused by a biased shortwave-SST feedback that erroneously is positive in most climate models. In the most biased models, the shortwave-SST feedback contributes to the SST anomaly growth to a similar degree as the ocean circulation. Our results suggest that a broad continuum of ENSO dynamics can exist in climate models and explain why climate models with less than a half of the observed EAF strength can still depict realistic ENSO amplitude.

Description: Diseases increasingly threaten aquaculture of kelps and other seaweeds. At the same time, protection concepts that are based upon application of biocides are usually not applicable, as such compounds would be rapidly diluted in the sea, causing ecological damage. An alternative concept could be the application of immune stimulants to prevent and control diseases in farmed seaweeds. We here present a pilot study that investigated the effects of oligoalginate elicitation on juvenile and adult sporophytes of Saccharina japonica cultivated in China and on adult sporophytes of Saccharina latissima cultivated in Germany. In two consecutive years, treatment with oligoalginate clearly reduced the detachment of S. japonica juveniles from their substrate curtains during the nursery stage in greenhouse ponds. Oligoalginate elicitation also decreased the density of endobionts and the number of bacterial cells on sporophytes of S. latissima that were cultivated on sea-based rafts. However, the treatment increased the susceptibility of kelp adults to settlement of epibionts (barnacles in Germany and filamentous algal epiphytes in China). In addition, oligoalginate elicitation accelerated the aging of S. japonica adults. Based upon these findings, oligoalginate elicitation could be a feasible way to provide “environmentally friendly” protection of kelp juveniles in nurseries. The same treatment causes not only beneficial, but also unwanted effects in adult kelp sporophytes. Therefore, it is not recommended as a treatment after the juvenile stage is completed. Future tests with other elicitors and other cultivated seaweed species may allow for the development of more feasible applications of targeted defense elicitation in seaweed aquaculture.

Description: We investigate the role of the tropics, the stratosphere, and atmosphere‐ocean coupling for seasonal forecasts of strong, potentially damaging, Northern Hemisphere extratropical winter wind storm frequencies. This is done by means of relaxation experiments with the European Centre for Medium‐Range Weather Forecasts model, which allow us to prescribe perfect forecasts for specific parts of the coupled atmosphere‐ocean system. We find that perfect predictions of the Northern Hemisphere stratosphere significantly enhance winter storm predictive skill between eastern Greenland and Northern Europe. Correct seasonal predictions of the occurrence of stratospheric sudden warmings play a decisive role. The importance of correctly predicting the tropics and of two‐way atmosphere‐ocean coupling, both for forecasting stratospheric sudden warming risk and, correspondingly, severe winter storm frequency, is noted.

Description: The northern part of the South China Sea is characterized by widespread occurrence of bottom simulating reflectors (BSR) indicating the presence of marine gas hydrate. Because the area covers both a tectonically inactive passive margin and the termination of a subduction zone, the influence of tectonism on the dynamics of gas hydrate systems can be studied in this region. Geophysical data show that there are multiple thrust faults on the active margin while much fewer and smaller faults exist in the passive margin. This tectonic difference matches with a difference in the geophysical characteristics of the gas hydrate systems. High hydrate saturation derived from ocean bottom seismometer data and controlled source electromagnetic data and conspicuous high‐amplitude reflections in P‐Cable 3D seismic data above the BSR are found in the anticlinal ridges of the active margin. In contrast all geophysical evidence for the passive margin points to normal to low hydrate saturations. Geochemical analyses of gas samples collected at seep sites on the active margin show methane with heavy δ13C isotope composition, while gas collected at the passive margin shows light carbon isotope composition. Thus, we interpret the passive margin as a typical gas hydrate province fuelled by biogenic production of methane and the active margin gas hydrate system as a system that is fuelled not only by biogenic gas production but also by additional advection of thermogenic methane from the subduction system.

Description: The present study details the effects of basin-scale hydrographic characteristics of the Red Sea on the macroecology of Chaetognatha, a major plankton component in the pelagic realm. The hydrographic attributes and circulation of the Red Sea as a result of its limited connection with the northern Indian Ocean make it a unique ecohydrographic region in the world ocean. Here, we aimed to identify the prime determinants governing the community structure and vertical distribution of the Cheatognatha in this ecologically significant world ocean basin. The intrusion of Gulf of Aden Water influenced the Chaetognatha community composition in the south, whereas the overturning circulation altered their vertical distribution in the north. The existence of hypoxic waters (〈 100 µmol kg−1) at mid-depth also influenced their vertical distribution. The detailed evaluation of the responses of the different life stages of Chaetognatha revealed an increased susceptibility of adult individuals to hypoxic waters compared to immature stages. Higher oxygen demands of the adults for the egg and sperm production might have prevented them from inhabiting the oxygen-deficient mid-depth zones. The carbon and nitrogen content of the Copepoda and Chaetognatha communities and the quantification of the predation impact of Chaetognatha on Copepoda based on the feeding rate helped in corroborating the significant trophic link between these two prey–predator taxa. The observed influences of physical and chemical attributes on the distribution of Chaetognatha can be used as a model example for the role of the hydrography on the zooplankton community of the Red Sea.

Description: To provide an observational basis for the Intergovernmental Panel on Climate Change projections of a slowing Atlantic meridional overturning circulation (MOC) in the 21st century, the Overturning in the Subpolar North Atlantic Program (OSNAP) observing system was launched in the summer of 2014. The first 21-month record reveals a highly variable overturning circulation responsible for the majority of the heat and freshwater transport across the OSNAP line. In a departure from the prevailing view that changes in deep water formation in the Labrador Sea dominate MOC variability, these results suggest that the conversion of warm, salty, shallow Atlantic waters into colder, fresher, deep waters that move southward in the Irminger and Iceland basins is largely responsible for overturning and its variability in the subpolar basin.

Description: The mechanisms controlling the variability of oxygen levels in the ocean are poorly quantified. We focus here on the impact of wind synoptic variability associated with tropical convective regions and extra‐tropical storms. Removing the wind higher frequencies of variability (2 days – 1 month) in an atmosphere reanalysis used to force an ocean model decreases wind stress by up to 20% in the tropics and 50% in the mid‐latitudes, weakening wind‐driven ocean circulation by 20%. Oxygen levels decrease by up to 10 mmol.m‐3 in tropical oceans and 30 mmol.m‐3 in subtropical gyres mainly due to changes in advective processes. While a large part of the tropical oxygen anomaly has local origins, changes in oxygen levels in the subtropical gyres modulate tropical oxygen distribution. Our study suggests that the “storminess” of the ocean is an important parameter that could determine the future evolution of poorly oxygenated regions.

Description: The Benguela Upwelling system (BUS) is the most productive of all eastern boundary upwelling ecosystems and it hosts a well‐developed oxygen minimum zone. As such, the BUS is a potential hotspot for production of N2O, a potent greenhouse gas derived from microbially‐driven decay of sinking organic matter. Yet, the extent at which near‐surface waters emit N2O to the atmosphere in the BUS is highly uncertain. Here we present the first high‐resolution surface measurements of N2O across the northern part of the BUS (nBUS). We found strong gradients with a three‐fold increase in N2O concentrations near the coast as compared with open ocean waters. Our observations show enhanced sea‐to‐air fluxes of N2O (up to 1.67 nmol m−2 s−1) in association with local upwelling cells. Based on our data we suggest that the nBUS can account for 13% of the total coastal upwelling source of N2O to the atmosphere.

Description: Hydroxylamine (NH 2 OH), a short-lived intermediate in the nitrogen cycle, is a potential precursor of nitrous oxide (N 2 O) in the ocean. However, measurements of NH 2 OH in the ocean are sparse. Here we present a data set of depth profiles of NH 2 OH from the equatorial Atlantic Ocean and the eastern tropical South Pacific and compare it to N 2 O, nitrate, and nitrite profiles under varying oxygen conditions. The presence of NH 2 OH in surface waters points toward surface nitrification in the upper 100 m. Overall, we found a ratio of 1:3 between NH 2 OH and N 2 O in open ocean areas when oxygen concentrations were 〉50 μmol/L. In the equatorial Atlantic Ocean and the open ocean eastern tropical South Pacific, where nitrification is the dominant N 2 O production pathway, stepwise multiple regressions demonstrated that N 2 O, NH 2 OH, and nitrate concentrations were highly correlated, suggesting that NH 2 OH is a potential indicator for nitrification.

Description: Ocean acidification (OA) is affecting marine ecosystems through changes in carbonate chemistry that may influence consumers of phytoplankton, often via trophic pathways. Using a mesocosm approach, we investigated OA effects on a subtropical zooplankton community during oligotrophic, bloom, and post-bloom phases under a range of different pCO2 levels (from ∼400 to ∼1480 μatm). Furthermore, we simulated an upwelling event by adding 650 m-depth nutrient-rich water to the mesocosms, which initiated a phytoplankton bloom. No effects of pCO2 on the zooplankton community were visible in the oligotrophic conditions before the bloom. The zooplankton community responded to phytoplankton bloom by increased abundances in all treatments, although the response was delayed under high-pCO2 conditions. Microzooplankton was dominated by small dinoflagellates and aloricate ciliates, which were more abundant under medium- to high-pCO2 conditions. The most abundant mesozooplankters were calanoid copepods, which did not respond to CO2 treatments during the oligotrophic phase of the experiment but were found in higher abundance under medium- and high-pCO2 conditions toward the end of the experiment, most likely as a response to increased phyto- and microzooplankton standing stocks. The second most abundant mesozooplankton taxon were appendicularians, which did not show a response to the different pCO2 treatments. Overall, CO2 effects on zooplankton seemed to be primarily transmitted through significant CO2 effects on phytoplankton and therefore indirect pathways. We conclude that elevated pCO2 can change trophic cascades with significant effects on zooplankton, what might ultimately affect higher trophic levels in the future.

Description: As coastal areas become increasingly vulnerable to climate change, the study of nearshore sediment textures along the littoral cell of the Medjerda delta in the Gulf of Tunis, southern Mediterranean coast can provide valuable information (i) on the origin (continental or marine) of the sediment, (ii) its transport direction, and (iii) constitutes an important tool in the assessment of coastal sensitivity. A total of 120 sediments samples underwent grain size analysis and statistic parameters have been calculated. These allowed the identification of five different Sedimentary Types (ST). Accordingly, using grain size indexes (i.e. Mz, SKI and Ku), Sediment Trend Analysis (STA) modeling tools were applied to define the seasonal sediment transport pathways throughout the nearshore of the Medjerda sedimentary cell. Results show that grain size distribution (GSD) and STA model pathways are determined by cross-shore geomorphology, location of the sediment-cell, seasonal incident wave and local terrestrial supply. The appearance in an atypical seabed location of the finer (Mo = 0.1 mm) and the coarser STs (Mo = 0.8 mm) can be indicative of human influence since the coarser particles are usually retained by dam structures. Moreover, the bimodality and the increased distribution of mud are also related to the seasonal incident wave winnowing of the historic deltaic plain submerged by the relative rise in sea level. The evolution of the sediment pattern towards a greater proportion of very fine grains indicates a deficit of sediment supply, particularly of the coarser grains, and demonstrates the coastal vulnerability of the Gulf of Tunis due to anthropic effects.

Description: Radiative forcing from volcanic aerosol impacts surface temperatures; however, the background climate state also affects the response. A key question thus concerns whether constraining forcing estimates is more important than constraining initial conditions for accurate simulation and attribution of posteruption climate anomalies. Here we test whether different realistic volcanic forcing magnitudes for the 1815 Tambora eruption yield distinguishable ensemble surface temperature responses. We perform a cluster analysis on a superensemble of climate simulations including three 30-member ensembles using the same set of initial conditions but different volcanic forcings based on uncertainty estimates. Results clarify how forcing uncertainties can overwhelm initial-condition spread in boreal summer due to strong direct radiative impact, while the effect of initial conditions predominate in winter, when dynamics contribute to large ensemble spread. In our setup, current uncertainties affecting reconstruction-simulation comparisons prevent conclusions about the magnitude of the Tambora eruption and its relation to the “year without summer.”

Description: Increasing global energy demands have led to the ongoing intensification of hydrocarbon extraction from marine areas. Hydrocarbon extractive activities pose threats to native marine biodiversity, such as noise, light, and chemical pollution, physical changes to the sea floor, invasive species, and greenhouse gas emissions. Here, we assessed at a global scale the spatial overlap between offshore hydrocarbon activities and marine biodiversity (〉25,000 species, nine major ecosystems, and marine protected areas), and quantify the changes over time. We discovered that two-thirds of global offshore hydrocarbon activities occur in areas within the top 10% for species richness, range rarity, and proportional range rarity values globally. Thus, while hydrocarbon activities are undertaken in less than one percent of the ocean's area, they overlap with approximately 85% of all assessed species. Of conservation concern, 4% of species with the largest proportion of their range overlapping hydrocarbon activities are range restricted, potentially increasing their vulnerability to localized threats such as oil spills. While hydrocarbon activities have extended to greater depths since the mid-1990s, we found that the largest overlap is with coastal ecosystems, particularly estuaries, saltmarshes and mangroves. Furthermore, in most countries where offshore hydrocarbon exploration licensing blocks have been delineated, they do not overlap with marine protected areas (MPAs). Although this is positive in principle, many countries have far more licensing block areas than protected areas, and in some instances, MPA coverage is minimal. These findings suggest the need for marine spatial prioritization to help limit future spatial overlap between marine conservation priorities and hydrocarbon activities. Such prioritization can be informed by the spatial and quantitative baseline information provided here. In increasingly shared seascapes, prioritizing management actions that set both conservation and development targets could help minimize further declines of biodiversity and environmental changes at a global scale.

Description: Rapid mass loss from the Greenland Ice Sheet (GrIS) is affecting sea level and, through increased freshwater and sediment discharge, ocean circulation, sea-ice, biogeochemistry, and marine ecosystems around Greenland. Key to interpreting ongoing and projecting future ice loss, and its impact on the ocean, is understanding exchanges of heat, freshwater, and nutrients that occur at the GrIS marine margins. Processes governing these exchanges are not well understood because of limited observations from the regions where glaciers terminate into the ocean and the challenge of modeling the spatial and temporal scales involved. Thus, notwithstanding their importance, ice sheet/ocean exchanges are poorly represented or not accounted for in models used for projection studies. Widespread community consensus maintains that concurrent and long-term records of glaciological, oceanic, and atmospheric parameters at the ice sheet/ocean margins are key to addressing this knowledge gap by informing understanding, and constraining and validating models. Through a series of workshops and documents endorsed by the community-at-large, a framework for an international, collaborative, Greenland Ice sheet-Ocean Observing System (GrIOOS), that addresses the needs of society in relation to a changing GrIS, has been proposed. This system would consist of a set of ocean, glacier, and atmosphere essential variables to be collected at a number of diverse sites around Greenland for a minimum of two decades. Internationally agreed upon data protocols and data sharing policies would guarantee uniformity and availability of the information for the broader community. Its development, maintenance, and funding will require close international collaboration. Engagement of end-users, local people, and groups already active in these areas, as well as synergy with ongoing, related, or complementary networks will be key to its success and effectiveness.

Description: A broad variety of materials of biological origin have been successfully used in recent decades for the removal of pollutants from waters. These biosorbents include natural polymers that play a key role for adsorption. It is therefore critical to understand the physicochemical properties of the chemical groups of these biopolymers. The acid–base properties of biomass are affected by pH, ionic strength and medium composition. Nevertheless, these parameters are not always considered during biosorption studies. According to the literature, less than 3% of biosorption reports include studies on proton binding. Moreover, in 60% of these papers, there is key experimental information missing such as the calibration of the electrodes employed for potentiometric titrations. We consider therefore that there is an important need for reviewing the role of proton binding in biosorption studies. This review outlines the major advances on data interpretation and modelling of proton binding on biosorbents. In addition, we discuss issues concerning the acid–base properties of biosorbents.

Description: Genetic data have great potential for improving fisheries management by identifying the fundamental management units—that is, the biological populations—and their mixing. However, so far, the number of practical cases of marine fisheries management using genetics has been limited. Here, we used Atlantic cod in the Baltic Sea to demonstrate the applicability of genetics to a complex management scenario involving mixing of two genetically divergent populations. Specifically, we addressed several assumptions used in the current assessment of the two populations. Through analysis of 483 single nucleotide polymorphisms (SNPs) distributed across the Atlantic cod genome, we confirmed that a model of mechanical mixing, rather than hybridization and introgression, best explained the pattern of genetic differentiation. Thus, the fishery is best monitored as a mixed-stock fishery. Next, we developed a targeted panel of 39 SNPs with high statistical power for identifying population of origin and analyzed more than 2,000 tissue samples collected between 2011 and 2015 as well as 260 otoliths collected in 2003/2004. These data provided high spatial resolution and allowed us to investigate geographical trends in mixing, to compare patterns for different life stages and to investigate temporal trends in mixing. We found similar geographical trends for the two time points represented by tissue and otolith samples and that a recently implemented geographical management separation of the two populations provided a relatively close match to their distributions. In contrast to the current assumption, we found that patterns of mixing differed between juveniles and adults, a signal likely linked to the different reproductive dynamics of the two populations. Collectively, our data confirm that genetics is an operational tool for complex fisheries management applications. We recommend focussing on developing population assessment models and fisheries management frameworks to capitalize fully on the additional information offered by genetically assisted fisheries monitoring.

Description: Prediction and Research Moored Array in the Tropical Atlantic (PIRATA) is a multinational program initiated in 1997 in the tropical Atlantic to improve our understanding and ability to predict ocean-atmosphere variability. PIRATA consists of a network of moored buoys providing meteorological and oceanographic data transmitted in real time to address fundamental scientific questions as well as societal needs. The network is maintained through dedicated yearly cruises, which allow for extensive complementary shipboard measurements and provide platforms for deployment of other components of the Tropical Atlantic Observing System. This paper describes network enhancements, scientific accomplishments and successes obtained from the last 10 years of observations, and additional results enabled by cooperation with other national and international programs. Capacity building activities and the role of PIRATA in a future Tropical Atlantic Observing System that is presently being optimized are also described.

Description: The tropical Atlantic is home to multiple coupled climate variations covering a wide range of timescales and impacting societally relevant phenomena such as continental rainfall, Atlantic hurricane activity, oceanic biological productivity, and atmospheric circulation in the equatorial Pacific. The tropical Atlantic also connects the southern and northern branches of the Atlantic meridional overturning circulation and receives freshwater input from some of the world’s largest rivers. To address these diverse, unique, and interconnected research challenges, a rich network of ocean observations has developed, building on the backbone of the Prediction and Research Moored Array in the Tropical Atlantic (PIRATA). This network has evolved naturally over time and out of necessity in order to address the most important outstanding scientific questions and to improve predictions of tropical Atlantic severe weather and global climate variability and change. The tropical Atlantic observing system is motivated by goals to understand and better predict phenomena such as tropical Atlantic interannual to decadal variability and climate change; multidecadal variability and its links to the meridional overturning circulation; air-sea fluxes of CO2 and their implications for the fate of anthropogenic CO2; the Amazon River plume and its interactions with biogeochemistry, vertical mixing, and hurricanes; the highly productive eastern boundary and equatorial upwelling systems; and oceanic oxygen minimum zones, their impacts on biogeochemical cycles and marine ecosystems, and their feedbacks to climate. Past success of the tropical Atlantic observing system is the result of an international commitment to sustained observations and scientific cooperation, a willingness to evolve with changing research and monitoring needs, and a desire to share data openly with the scientific community and operational centers. The observing system must continue to evolve in order to meet an expanding set of research priorities and operational challenges. This paper discusses the tropical Atlantic observing system, including emerging scientific questions that demand sustained ocean observations, the potential for further integration of the observing system, and the requirements for sustaining and enhancing the tropical Atlantic observing system.

Description: Ultraslow spreading ridges account for one-third of the global mid-ocean ridges. Their impact on the diversity and connectivity of benthic deep-sea microbial assemblages is poorly understood, especially for hydrothermally inactive, magma-starved ridges. We investigated bacterial and archaeal diversity in sediments collected from an amagmatic segment (10∘–17∘E) of the Southwest Indian Ridge (SWIR) and in the adjacent northern and southern abyssal zones of similar water depths within one biogeochemical province of the Indian Ocean. Microbial diversity was determined by 16S ribosomal RNA (rRNA) gene sequencing. Our results show significant differences in microbial communities between stations outside and inside the SWIR, which were mostly explained by environmental selection. Community similarity correlated significantly with differences in chlorophyll a content and with the presence of upward porewater fluxes carrying reduced compounds (e.g., ammonia and sulfide), suggesting that trophic resource availability is a main driver for changes in microbial community composition. At the stations in the SWIR axial valley (3,655–4,448 m water depth), microbial communities were enriched in bacterial and archaeal taxa common in organic matter-rich subsurface sediments (e.g., SEEP-SRB1, Dehalococcoida, Atribacteria, and Woesearchaeota) and chemosynthetic environments (mainly Helicobacteraceae). The abyssal stations outside the SWIR communities (3,760–4,869 m water depth) were dominated by OM1 clade, JTB255, Planctomycetaceae, and Rhodospirillaceae. We conclude that ultraslow spreading ridges create a unique environmental setting in sedimented segments without distinct hydrothermal activity, and play an important role in shaping microbial communities and promoting diversity, but also in connectivity among deep-sea habitats.

Description: Parasites are one of the strongest selective agents in nature. They select for hosts that evolve counter‐adaptive strategies to cope with infection. Helminth parasites are special because they can modulate their hosts’ immune responses. This phenomenon is important in epidemiological contexts, where coinfections may be affected. How different types of hosts and helminths interact with each other is insufficiently investigated. We used the three‐spined stickleback (Gasterosteus aculeatus) – Schistocephalus solidus model to study mechanisms and temporal components of helminth immune modulation. Sticklebacks from two contrasting populations with either high resistance (HR) or low resistance (LR) against S. solidus, were individually exposed to S. solidus strains with characteristically high growth (HG) or low growth (LG) in G. aculeatus. We determined the susceptibility to another parasite, the eye fluke Diplostomum pseudospathaceum, and the expression of 23 key immune genes at three time points after S. solidus infection. D. pseudospathaceum infection rates and the gene expression responses depended on host and S. solidus type and changed over time. Whereas the effect of S. solidus type was not significant after three weeks, T regulatory responses and complement components were upregulated at later time points if hosts were infected with HG S. solidus. HR hosts showed a well orchestrated immune response, which was absent in LR hosts. Our results emphasize the role of regulatory T cells and the timing of specific immune responses during helminth infections. This study elucidates the importance to consider different coevolutionary trajectories and ecologies when studying host‐parasite interactions.

Description: Seafloor massive sulphide (SMS) deposits are of increasing economic interest in order to satisfy the relentless growth in worldwide metal demand. The Trans‐Atlantic Geotraverse (TAG) hydrothermal field at 26°N on the Mid‐Atlantic Ridge hosts several such deposits. This study presents new controlled source electromagnetic (CSEM), bathymetric and magnetic results from the TAG field. Potential SMS targets were selected based on their surface expressions in high‐resolution bathymetric data. High‐resolution reduced‐to‐the‐pole magnetic data show negative anomalies beneath and surrounding the SMS deposits, revealing large areas of hydrothermal alteration. CSEM data, sensitive to the electrical conductivity of SMS mineralization, further reveal a maximum thickness of up to 80 m and conductivities of up to 5 S/m. SMS samples have conductivities of up to a few thousand S/m, suggesting that remotely inferred conductivities represent an average of metal sulphide ores combined with silicified and altered host basalt that likely dominates at greater depths.

Description: Oceanic oxygen decline due to anthropogenic climate change is a matter of growing concern. A quantitative oxygen proxy is highly desirable in order to identify and monitor recent dynamics as well as to reconstruct pre-Anthropocene changes in amplitude and extension of oxygen depletion. Geochemical proxies like foraminiferal I/Ca ratios seem to be promising redox proxies. Nevertheless, recent studies on microanalyses of benthic foraminiferal I/Ca ratios at the Peruvian oxygen minimum zone (OMZ) measured with secondary-ion mass spectrometry (SIMS) revealed a possible association of iodine with organic accumulations within the test. Here, we present a new study on the micro-distribution of nitrogen, sulfur, and iodine within the test walls of Uvigerina striata from the Peruvian OMZ measured with Nano-SIMS. A quantification of the foraminiferal I/Ca ratios from our NanoSIMS study is in good agreement with quantitative results from a previous SIMS study. Additionally, we compared uncleaned specimens with specimens that have been treated with an oxidative cleaning procedure. Both nitrogen and sulfur, which are used as tracer for organic matter, show a patchy distribution within the test walls of the uncleaned specimens and a statistically significant correlation with the iodine distribution. This patchy organic-rich phase has a different geochemical signature than the pristine calcitic parts of the test and another phase that shows a banding-like structure and that is characterized by a strong sulfur enrichment. All three elements, sulfur, nitrogen, and iodine, are strongly depleted in the cleaned specimens, even within the massive parts of the test walls that lack the connection with the test pores. These results indicate that the organic parts of the test walls are located inside a microporous framework within the foraminiferal calcite. This has to be considered in the interpretation of geochemical proxies on foraminiferal calcite, especially for microanalytical methods, since the chemical signature of these organic parts likely alters some element-to-calcium ratios within the foraminiferal test.

Description: The climate of the last two millennia was characterised by decadal to multi‐centennial variations which were recorded in terrestrial records and had important societal impacts. The cause of these climatic events is still under debate but changes in the North Atlantic circulation have often been proposed to play an important role. In this review we compile available high‐resolution paleoceanographic datasets from the northern North Atlantic and Nordic Seas. The records are grouped into regions related to modern ocean conditions and their variability is discussed. We additionally discuss our current knowledge from modelling studies, with a specific focus on the dynamical changes that are not well inferred from the proxy records. An illustration is provided through the analysis of two climate model ensembles and an individual simulation of the last millennium. This review thereby provides an up‐to‐date paleo‐perspective on the North Atlantic multidecadal to multi‐centennial ocean variability across the last two millennia.

Description: Marine sponges (Phylum Porifera) are globally distributed within marine and freshwater ecosystems. In addition, sponges host dense and diverse prokaryotic communities, which are potential sources of novel bioactive metabolites and other complex compounds. Those sponge-derived natural products can span a broad spectrum of bioactivities, from antibacterial and antifungal to antitumor and antiviral compounds. However, most analyses concerning sponge-associated prokaryotes have mainly focused on conveniently accessible relatively shallow sampling locations for sponges. Hence, knowledge of community composition, host-relatedness and biotechnological potential of prokaryotic associations in temperate and cold-water sponges from greater depths (mesophotic to mesopelagic zones) is still scarce. Therefore, we analyzed the prokaryotic community diversity of four phylogenetically divergent sponge taxa from mesophotic to mesopelagic depths of Antarctic shelf at different depths and locations in the region of the South Shetland Islands using 16S rRNA gene amplicon-based sequencing. In addition, we predicted functional profiles applying Tax4Fun from metagenomic 16S rRNA gene data to estimate their biotechnological capability and possible roles as sources of novel bioactive compounds. We found indications that cold and deep-water sponges exhibit host-specific prokaryotic communities, despite different sampling sites and depths. Functional prediction analysis suggests that the associated prokaryotes may enhance the roles of sponges in biodegradation processes of xenobiotics and their involvement in the biosynthesis of secondary metabolites.

Description: Hydrothermal fluids on the modern seafloor are important carriers of base and precious metals in a wide range of volcanic and tectonic settings. The concentrations and distribution, especially of gold and silver, in associated seafloor massive sulfide (SMS) deposits are strongly influenced by variable source rocks, fluid chemistry, and precipitation mechanisms. Compositional data of 130 SMS deposits around the world show a large range of gold and silver grades, in part reflecting strong buffering of the hydrothermal fluids by their host rocks. Geochemical reaction-path modeling shows that in most cases the investigated hydrothermal fluids are undersaturated with gold and silver, and solubilities can be orders of magnitude higher than the Au and Ag concentrations measured in the corresponding fluids. Precipitation of gold during conductive cooling of mid-ocean ridge black smoker (MOR) fluids occurs at low temperatures but can be very rapid, with 〉 90% of the gold deposited in the first 25 °C of cooling below ~ 150 °C. The result is a Zn–Au polymetallic assemblage with Au and Ag deposited at the same time together with Pb and sulfosalts. In ultramafic-dominated (UM) systems, the strongly reduced hydrothermal fluids promote the deposition of gold at higher temperatures and explain the correlation between gold and copper in these deposits. In this case, the lower stability of the AuHS° complex at low ƒO2 (buffered by fayalite, magnetite, and quartz) results in gold deposition at 〉 250 °C with early bornite and chalcopyrite and before sphalerite and silver, producing a high-temperature Cu–Au assemblage. In sediment-hosted (SED) systems, the much higher pH stabilizes Au(HS)2− and keeps gold in solution to very low temperatures, after the precipitation of chalcopyrite, sphalerite, and galena, resulting in Au-poor polymetallic sulfides and very late-stage deposition of gold, commonly with amorphous silica. In arc-related (ARC) systems, gold deposition occurs at somewhat higher temperatures than in the MOR case, in part because the fluids start with higher gold concentrations. This can be explained by probable direct magmatic contributions, and the high ƒO2 of the fluids, which promotes the solubility of gold at the source. During cooling, gold precipitates at about 160 °C with sphalerite, tennantite, silver, and galena, resulting in an Au-rich polymetallic sulfide assemblage. The mixing of hydrothermal fluids with seawater generally causes oxidation and eventually a decrease in the pH at a mixing ratio of 1:1, causing an initial increase in the solubility of gold and silver. This can delay gold deposition from aqueous species to very low temperatures. These complex systematics make prediction of Au and Ag grades difficult. However, important new data are coming to light on the actual concentrations of the precious metals in hydrothermal fluids. In particular, the input of magmatic volatiles and leaching of pre-existing gold can lead to significant increases in the Au and Ag concentrations of the venting fluids and earlier deposition. In several cases, it appears that at least part of the gold load is present as nanoparticles in suspension, allowing bulk gold concentrations that may be far in excess of liquid saturation. Boiling at the seafloor is now widely observed, even at great water depths close to the critical point of seawater. Model calculations of phase separation during boiling show the competing effects on gold solubility of H2, H2S, and CO2 partitioning into the vapor, which can result in highly variable gold-to-base metal ratios in the deposits. Flashing of the vent fluids into steam at high temperatures is also commonly observed and can lead to spectacular Au grades, with a strong Cu–Au association in the deepest and hottest vents.

Description: In the course of the ongoing global intensification and diversification of human pressures, the study of variation patterns of biological traits along environmental gradients can provide relevant information on the performance of species under shifting conditions. The pronounced salinity gradient, co‐occurrence of multiple stressors, and accelerated rates of change make the Baltic Sea and its transition to North Sea a suitable region for this type of study. Focusing on the bladderwrack Fucus vesiculosus, one of the main foundation species on hard‐bottoms of the Baltic Sea, we analyzed the phenotypic variation among populations occurring along 2,000 km of coasts subjected to salinities from 4 to 〉30 and a variety of other stressors. Morphological and biochemical traits, including palatability for grazers, were recorded at 20 stations along the Baltic Sea and four stations in the North Sea. We evaluated in a common modeling framework the relative contribution of multiple environmental drivers to the observed trait patterns. Salinity was the main and, in some cases, the only environmental driver of the geographic trait variation in F. vesiculosus. The decrease in salinity from North Sea to Baltic Sea stations was accompanied by a decline in thallus size, photosynthetic pigments, and energy storage compounds, and affected the interaction of the alga with herbivores and epibiota. For some traits, drivers that vary locally such as wave exposure, light availability or nutrient enrichment were also important. The strong genetic population structure in this macroalgae might play a role in the generation and maintenance of phenotypic patterns across geographic scales. In light of our results, the desalination process projected for the Baltic Sea could have detrimental impacts on F. vesiculosus in areas close to its tolerance limit, affecting ecosystem functions such as habitat formation, primary production, and food supply.

Description: N2-fixing cyanobacteria mediate H2 fluxes through the opposing processes of H2 evolution, which is a by-product of the N2 fixation reaction, and H2 uptake, which is driven by uptake hydrogenases. Here, we used microelectrodes to characterize H2 and O2 dynamics in single natural colonies of the globally important N2 fixer Trichodesmium collected from the Gulf of Eilat. We observed gradually changing H2 dynamics over the course of the day, including both net H2 evolution and net H2 uptake, as well as large differences in H2 fluxes between individual colonies. Net H2 uptake was observed in colonies amended with H2 in both light and dark. Net H2 evolution was recorded in the light only, reflecting light-dependent N2 fixation coupled to H2 evolution. Both net H2 evolution and H2 uptake rates were higher before 2 pm than later in the day. These pronounced H2 dynamics in the morning coincided with strong net O2 uptake and the previously reported diel peak in N2 fixation. Later in the afternoon, when photosynthesis rates determined by O2 measurements were highest, and N2 fixation rates decrease according to previous studies, the H2 dynamics were also less pronounced. Thus, the observed diel variations in H2 dynamics reflect diel changes in the rates of O2 consumption and N2 fixation. Remarkably, the presence of H2 strongly stimulated the uptake of mineral iron by natural colonies. The magnitude of this effect was dependent on the time of day, with the strongest response in incubations that started before 2 pm, i.e., the period that covered the time of highest uptake hydrogenase activity. Based on these findings, we propose that by providing an electron source for mineral iron reduction in N2-fixing cells, H2 may contribute to iron uptake in Trichodesmium colonies.

Description: Heme b is an iron-containing co-factor in hemoproteins. Heme b concentrations are low (〈1 pmol L-1) in iron limited phytoplankton in cultures and in the field. Here, we determined heme b in marine particulate material (〉0.7 μm) from the North Atlantic Ocean (GEOVIDE cruise – GEOTRACES section GA01), which spanned several biogeochemical regimes. We examined the relationship between heme b abundance and the microbial community composition, and its utility for mapping iron limited phytoplankton. Heme b concentrations ranged from 0.16 to 5.1 pmol L-1 (median = 2.0 pmol L-1, n = 62) in the surface mixed layer (SML) along the cruise track, driven mainly by variability in biomass. However, in the Irminger Basin, the lowest heme b levels (SML: median = 0.53 pmol L-1, n = 12) were observed, whilst the biomass was highest (particulate organic carbon, median = 14.2 μmol L-1, n = 25; chlorophyll a: median = 2.0 nmol L-1, n = 23) pointing to regulatory mechanisms of the heme b pool for growth conservation. Dissolved iron (DFe) was not depleted (SML: median = 0.38 nmol L-1, n = 11) in the Irminger Basin, but large diatoms (Rhizosolenia sp.) dominated. Hence, heme b depletion and regulation is likely to occur during bloom progression when phytoplankton class-dependent absolute iron requirements exceed the available ambient concentration of DFe. Furthermore, high heme b concentrations found in the Iceland Basin and Labrador Sea (median = 3.4 pmol L-1, n = 20), despite having similar DFe concentrations to the Irminger Basin, were attributed to an earlier growth phase of the extant phytoplankton populations. Thus, heme b provides a snapshot of the cellular activity in situ and could both be used as indicator of iron limitation and contribute to understanding phytoplankton adaptation mechanisms to changing iron supplies.

Description: Key Points: • A regional ocean model is used to examine multidecadal shelf temperature changes on the Agulhas Bank • There are distinct shelf temperature regime changes in 1966 and 1996 • These regime shifts are caused by changes in coastal upwelling linked to large-scale wind variability The Agulhas Bank is an important area for the spawning of small pelagic fish and other species. Here, within a NEMO ocean model, we investigate changes in temperature over the Bank on multidecadal time scales. In agreement with previous observational studies, a shift to colder temperatures is found in 1997. The model also simulates an earlier shift from colder to warmer temperatures in 1966. These shifts are coastally confined and shown, using a climatologically forced model run as a control, to be driven by a north‐south migration in the large‐scale wind belts, rather than by changes in downward heat fluxes or changes in the Agulhas Current itself. The zonal wind changes on the Agulhas Bank show a significant relationship with the Southern Annular Mode, showing some promise for future predictability of cold and warm regimes on the Agulhas Bank. Thus, while the Agulhas Current has been shown in previous work to have a large impact on intra‐annual and interannual temperature variability, this work shows that multidecadal variability in temperature on the shelf is likely to be wind forced.

Description: The ecological approach to comparative cognition emphasizes that the ecological and social environment are important predictors of cognitive performance. We used this approach to test whether differences in habitat use and social behavior in the facultative Caribbean cleaning goby Elacatinus prochilos predict differences in learning performance in two discriminatory two-choice tasks. This species has two behavioral ecotypes: one that frequently engages in cleaning interactions and inhabits corals in male–female pairs (cleaning gobies) and another that rarely engages in cleaning interactions and inhabits barrel sponges in large groups (sponge-dwellers). We predicted that cleaning gobies would outperform sponge-dwellers in a pattern-cued task, which consisted of identifying the pattern on a plate that consistently provided food, while sponge-dwellers would outperform cleaning gobies in a spatial task, which consisted of identifying the location of the plate. Contrary to our predictions, there was no difference in performance between the two ecotypes. Most of the gobies performed poorly in the pattern-cued task and well in the spatial task. A possible explanation for these results is that the association of a pattern with positive and negative reinforcement may not be a pre-requisite for engaging in cleaning interactions, while spatial skills might be equally required in both ecotypes. Alternatively, the two ecotypes can flexibly adjust to new feeding conditions, which would explain their similar performance in the spatial task. Further research should investigate which aspects of E. prochilos’ social and ecological environment might impose challenges that require spatial cognition and whether individuals can flexibly adjust to new habitats and feeding conditions.

Description: Gravitational sinking of photosynthetically fixed particulate organic carbon (POC) constitutes a key component of the biological carbon pump. The fraction of POC leaving the surface ocean depends on POC sinking velocity (SV) and remineralization rate (Cremin), both of which depend on plankton community structure. However, the key drivers in plankton communities controlling SV and Cremin are poorly constrained. In fall 2014, we conducted a 6 weeks mesocosm experiment in the subtropical NE Atlantic Ocean to study the influence of plankton community structure on SV and Cremin. Oligotrophic conditions prevailed for the first 3 weeks, until nutrient‐rich deep water injected into all mesocosms stimulated diatom blooms. SV declined steadily over the course of the experiment due to decreasing CaCO3 ballast and – according to an optical proxy proposed herein – due to increasing aggregate porosity mostly during an aggregation event after the diatom bloom. Furthermore, SV was positively correlated with the contribution of picophytoplankton to the total phytoplankton biomass. Cremin was highest during a Synechococcus bloom under oligotrophic conditions and in some mesocosms during the diatom bloom after the deep‐water addition while it was particularly low during harmful algal blooms. The temporal changes were considerably larger in Cremin (max. 15‐fold) than in SV (max. 3‐fold). Accordingly, estimated POC transfer efficiency to 1000 m was mainly dependent on how the plankton community structure affected Cremin. Our approach revealed key players and interactions in the plankton food web influencing POC export efficiency thereby improving our mechanistic understanding of the biological carbon pump. Key points Sinking velocity was higher during oligotrophy than during blooms which is linked to ballast, porosity, and phytoplankton size structure Remineralization was highly variable but tended to be higher during Synechococcus or diatom blooms and lower during harmful algal blooms Plankton community structure had a considerably larger influence on particle remineralization rate than on sinking velocity

Description: The physiological processes driving the rapid rates of calcification in larval bivalves are poorly understood. Here, we use a calcification substrate-limited approach (low dissolved inorganic carbon, CT) and mRNA sequencing to identify proteins involved in bicarbonate acquisition during shell formation. As a secondary approach, we examined expression of ion transport and shell matrix proteins (SMPs) over the course of larval development and shell formation. We reared four families of Mytilus edulis under ambient (ca. 1865 µmol/kg) and low CT (ca. 941 µmol/kg) conditions and compared expression patterns at six developmental time points. Larvae reared under low CT exhibited a developmental delay, and a small subset of contigs was differentially regulated between ambient and low CT conditions. Of particular note was the identification of one contig encoding an anion transporter (SLC26) which was strongly upregulated (2.3–2.9 fold) under low CT conditions. By analyzing gene expression profiles over the course of larval development, we are able to isolate sequences encoding ion transport and SMPs to enhance our understanding of cellular pathways underlying larval calcification processes. In particular, we observe the differential expression of contigs encoding SLC4 family members (sodium bicarbonate cotransporters, anion exchangers), calcium-transporting ATPases, sodium/calcium exchangers, and SMPs such as nacrein, tyrosinase, and transcripts related to chitin production. With a range of candidate genes, this work identifies ion transport pathways in bivalve larvae and by applying comparative genomics to investigate temporal expression patterns, provides a foundation for further studies to functionally characterize the proteins involved in larval calcification.

Description: Mid‐ocean ridge axes are marked by segmentation of the axes and underlying magmatic systems. Fine‐scale segmentation has mainly been studied along fast‐spreading ridges. Here we offer insight into the third‐ and fourth‐order segmentation of intermediate‐spreading ridges and their temporal evolution. The Alarcón Rise and the Endeavour Segment have similar spreading rates (49 and 52.5 mm/year, respectively) but contrasting morphologies that vary from an axial high with a relatively narrow axial summit trough to an axial valley. One‐meter resolution bathymetry acquired by autonomous underwater vehicles, lava geochemistry, and ages from sediment cores is combined with available seismic reflection profiles to analyze variations in (1) geometry and orientation of the axial summit trough or valley, (2) seafloor depth near the axis, and (3) distribution of hydrothermal vents, (4) lava chemistry, and (5) flow ages between contiguous axes. Along both intermediate‐spreading segments, third‐ and fourth‐order discontinuities and associated segments are similar in dimension to what has been observed along fast‐spreading ridges. The Alarcón Rise and the Endeavour Segment also allow the study of the evolution of fine‐scale segmentation over periods of 300 to 4,000 years. Comparison between old and young axes reveals that the evolution of fine‐scale segmentation depends on the intensity of the magmatic activity. High magmatic periods are associated with rapid evolution of third‐order segments, while low magmatic activity periods, dominated by tectonic deformation and/or hydrothermal activity, are associated with little to no change in segmentation.

Description: The subterranean flow of water through sand barriers between coastal lagoons and the sea, driven by a positive hydraulic gradient, is a net new pathway for solute transfer to the sea. On the sea side of sand barriers, seawater circulation in the swash-zone generates a flux of recycled and new solutes. The significance and temporal variability of these vectors to the French Mediterranean Sea is unknown, despite lagoons constituting ~ 50% of the coastline. A one-dimensional Ra-224(ex)/Ra-223 reactive-transport model was used to quantify water flow between a coastal lagoon (La Palme) and the sea over a 6-month period. Horizontal flow between the lagoon and sea decreased from ~ 85 cm d(-1) during May 2017 (0.3 m(3) d(-1) m(-1) of shoreline) to ~ 20 cm d(-1) in July and was negligible in the summer months thereafter due to a decreasing hydraulic gradient. Seawater circulation in the swash-zone varied from 10 to 52 cm d(-1) (0.4-2.1 m(3) d(-1) m(-1)), driven by short-term changes in the prevailing wind and wave regimes. Both flow paths supply minor dissolved silica fluxes on the order of ~ 3-10 mmol Si d(-1) m(-1). Lagoon-sea water exchange supplies a net dissolved inorganic carbon (DIC) flux (320-1100 mmol C d(-1) m(-1)) two orders of magnitude greater than seawater circulation and may impact coastal ocean acidification. The subterranean flow of water through sand barriers represents a significant source of new DIC, and potentially other solutes, to the Mediterranean Sea during high lagoon water-level periods and should be considered in seasonal element budgets.

Description: Our civilization needs a clean, resilient, productive, safe, well-observed, documented and predicted ocean. “The ocean we need for the future we want” was the motto of the Intergovernmental Oceanographic Commission proposal to the United Nations to consider the merit of an Ocean Science Decade. By proclaiming the Decade, the UN General Assembly offered the oceanographic community a unique, once in a life-time, opportunity to change the way we do things, make oceanography fit for purpose of effectively supporting sustainable development, and energize the ocean sciences for future generations. The Decade is the chance to put in place a more complete and sustainable observing system and feed the resulting data into a science-based informed decision-making system allowing increased reliance of our civilization on the ocean, its ecosystem services and, at the same time, preserving ocean health. Strong and proactive engagement of the oceanographic community in the design of the Decade and its observing component and subsequent energetic implementation of the ideas are sought. Participants in OceanObs’19 are invited to consider the additional possibilities and requirements associated with the Decade in their contributions to and brainstorming at the Conference. It is essential to use collective wisdom of OceanObs’19 to help developing an ambitious and also realistic implementation plan for the Decade, with a strong observational component.

Description: Climate change and variability are major societal challenges, and the ocean is an integral part of this complex and variable system. Key to the understanding of the ocean's role in the Earth's climate system is the study of ocean and sea-ice physical processes, including its interactions with the atmosphere, cryosphere, land and biosphere. These processes include those linked to ocean circulation; the storage and redistribution of heat, carbon, salt and other water properties; and air-sea exchanges of heat, momentum, freshwater, carbon and other gasses. Measurements of ocean physics variables are fundamental to reliable earth prediction systems for a range of applications and users. In addition, knowledge of the physical environment is fundamental to growing understanding of the ocean's biogeochemistry and biological/ecosystem variability and function. Through the progress from OceanObs'99 to OceanObs'09, the ocean observing system has evolved from a platform centric perspective to an integrated observing system. The challenge now is for the observing system to evolve to respond to an increasingly diverse end user group. The Ocean Observations Physics and Climate panel (OOPC), formed in 1995, has undertaken many activities that led to observing system-related agreements. Here, OOPC will explore the opportunities and challenges for the development of a fit-for-purpose, sustained and prioritized ocean observing system, focusing on physical variables that maximize support for fundamental research, climate monitoring, forecasting on different timescales, and society. OOPC recommendations are guided by the Framework for Ocean Observing (Lindstrom et al. 2012) which emphasizes identifying user requirements by considering time and space scales of the Essential Ocean Variables. This approach provides a framework for reviewing the adequacy of the observing system, looking for synergies in delivering an integrated observing system for a range of applications and focusing innovation in areas where existing technologies do not meet these requirements

Description: We study the structure and tectonics of the collision zone between the Nazca Ridge (NR) and the Peruvian margin constrained by seismic, gravimetric, bathymetric, and natural seismological data. The NR was formed in an on-ridge setting, and it is characterized by a smooth and broad shallow seafloor (swell) with an estimated buoyancy flux of ~7 Mg/s. The seismic results show that the NR hosts an oceanic lower crust 10–14 km thick with velocities of 7.2–7.5 km/s suggesting intrusion of magmatic material from the hot spot plume to the oceanic plate. Our results show evidence for subduction erosion in the frontal part of the margin likely enhanced by the collision of the NR. The ridge-trench collision zone correlates with the presence of a prominent normal scarp, a narrow continental slope, and (uplifted) shelf. In contrast, adjacent of the collision zone, the slope does not present a topographic scarp and the continental slope and shelf become wider and deeper. Geophysical and geodetic evidence indicate that the collision zone is characterized by low seismic coupling at the plate interface. This is consistent with vigorous subduction erosion enhanced by the subducting NR causing abrasion and increase of fluid pore pressure at the interplate contact. Furthermore, the NR has behaved as a barrier for rupture propagation of megathrust earthquakes (e.g., 1746 Mw 8.6 and 1942 Mw 8.1 events). In contrast, for moderate earthquakes (e.g., 1996 Mw 7.7 and 2011 Mw 6.9 events), the NR has behaved as a seismic asperity nucleating at depths 〉20 km.

Description: Precipitation in California is modulated by variability in the tropical Pacific associated with El Nino/Southern Oscillation (ENSO): more rainfall is expected during El Nino episodes, and reduced rainfall during La Nina. It has been suggested that besides the shape and location of the sea surface temperature ( SST) anomaly this remote connection depends on the strength and location of the atmospheric convection response in the tropical Pacific. Here we show in a perturbed physics ensemble of the Kiel Climate Model and CMIP5 models that due to a cold equatorial SST bias many climate models are in a La Nina-like mean state, resulting in a too westward position of the rising branch of the Pacific Walker Circulation. This in turn results in a convective response along the equator during ENSO events that is too far west in comparison to observations. This effect of the equatorial cold SST bias is not restricted to the tropics, moreover it leads to a too westward SLP response in the North Pacific and too westward precipitation response that does not reach California. Further we show that climate models with a reduced equatorial cold SST bias have a more realistic representation of the spatial asymmetry of the teleconnections between El Nino and La Nina.

Description: Repeated and independent emergence of trait divergence that matches habitat differences is a sign of parallel evolution by natural selection. Yet, the molecular underpinnings that are targeted by adaptive evolution often remain elusive. We investigate this question by combining genome-wide analyses of copy number variants (CNVs), single nucleotide polymorphisms (SNPs), and gene expression across four pairs of lake and river populations of the three-spined stickleback (Gasterosteus aculeatus). We tested whether CNVs that span entire genes and SNPs occurring in putative cis-regulatory regions contribute to gene expression differences between sticklebacks from lake and river origins. We found 135 gene CNVs that showed a significant positive association between gene copy number and gene expression, suggesting that CNVs result in dosage effects that can fuel phenotypic variation and serve as substrates for habitat-specific selection. Copy number differentiation between lake and river sticklebacks also contributed to expression differences of two immune-related genes in immune tissues, cathepsin A and GIMAP7. In addition, we identified SNPs in cis-regulatory regions (eSNPs) associated with the expression of 1,865 genes, including one eSNP upstream of a carboxypeptidase gene where both the SNP alleles differentiated and the gene was differentially expressed between lake and river populations. Our study highlights two types of mutations as important sources of genetic variation involved in the evolution of gene expression and in potentially facilitating repeated adaptation to novel environments.

Description: Does disease resistance evolution in vitro reflect resistance evolution in vivo? Hernandez and Koskella conducted serial passage experiments of the plant pathogenic bacterium Pseudomonas syringae and two lytic bacteriophages in high‐nutrient medium (in vitro) and in a tomato plant (in vivo). High levels of bacterial resistance to phages evolved in vitro but not in vivo, suggesting that high costs and low benefits of resistance explain the observed pattern.

Description: Rationale: Nitrous oxide (N2O) is an atmospheric trace gas regulating Earth's climate, and is a key intermediate of many nitrogen cycling processes in aquatic ecosystems. Laser-based technology for N2O concentration and isotopic/isotopomeric analyses has potential advantages, which include high analytical specificity, low sample size requirement and reduced cost. Methods: An autosampler with a purge-and-trap module is coupled to a cavity ring-down spectrometer to achieve automated and high-throughput measurements of N2O concentrations, N2O isotope ratios (δ15Nbulk and δ18O values) and position-specific isotopomer ratios (δ15Nα and δ15Nβ values). The system provides accuracy and precision similar to those for measurements made by traditional isotope ratio mass spectrometry (IRMS) techniques. Results: The sample sizes required were 0.01–1.1 nmol-N2O. Measurements of four N2O isotopic/isotopomeric references were cross-calibrated with those obtained by IRMS. With a sample size of 0.50 nmol-N2O, the measurement precision (1σ) for δ15Nα, δ15Nβ, δ15Nbulk and δ18O values was 0.61, 0.33, 0.41 and 0.43‰, respectively. Correction schemes were developed for sample size-dependent isotopic/isotopomeric deviations. The instrumental system demonstrated consistent measurements of dissolved N2O concentrations, isotope/isotopomer ratios and production rates in seawater. Conclusions: The coupling of an autosampler with a purge-and-trap module to a cavity ring-down spectrometer not only significantly reduces sample size requirements, but also offers comprehensive investigation of N2O production pathways by the measurement of natural abundance and tracer level isotopes and isotopomers. Furthermore, the system can perform isotopic analyses of dissolved and solid nitrogen-containing samples using N2O as the analytical proxy.

Description: Distinct differences were observed in geochemical signatures in sediments from two sites drilled in the upper plate of the Costa Rica margin during Integrated Ocean Drilling Program (IODP) Expedition 334. The upper 80 m at Site U1379, located on the outer shelf, show pore water non‐steady state conditions characteristic of a declining methane flux. These contrast with analyses of the upper sediment layers at the middle slope site (U1378) that reflect steady state conditions. Distinct carbonate‐rich horizons up to 11 meters thick were recovered between 63 and 310 meters below seafloor at Site U1379 but were not found at Site U1378. The carbonates and dissolved inorganic carbon from Site U1379 have a depleted carbon stable isotope signal (up to ‐25‰) that indicates anaerobic methane oxidation. This inference is further supported by distinct δ34S‐pyrite and magnetic susceptibility records that reveal fluctuations of the sulfate‐methane transition in response to methane flux variations. Tectonic reconstructions of this margin document a marked subsidence event after arrival of the Cocos Ridge, 2.2 ± 0.2 million years ago (Ma), followed by increased sedimentation rates and uplift. As the seafloor at Site U1379 rose from ~2000 m to the present water depth of ~126 m, the site moved out of the gas hydrate stability zone (GHSZ) at ~1.1 Ma, triggering upward methane advection, methane oxidation, and the onset of massive carbonate formation. Younger carbonate occurrences and the non‐steady state pore profiles at Site U1379 reflect continued episodic venting likely modulated by changes in the underlying methane reservoir.

Description: The pelagic ocean receives terrigenous inputs of a range of organic compounds; however, the role that this terrigenous material plays in the ocean carbon cycle and biological pump is not entirely understood, and questions remain as to how oceanic cycles of terrigenous and autochthonous carbon interact. A significant portion of organic carbon that cannot be utilized by marine microbes in the epipelagic ocean escapes microbial remineralization to be sequestered in the deep ocean as refractory dissolved organic matter (DOM). Lignin, a “model” terrigenous compound, is thought to be refractory in the open ocean unless chemically altered. However, in this study, incubation experiments performed using lignin-amended oligotrophic seawater from the Sargasso Sea exhibited bacteria and archaea growth that doubled compared to unamended control treatments. The increase in bacteria and archaea cell abundance in lignin-amended treatments coincided with a 21–25% decrease in absorbance (250–400 nm) of chromophoric dissolved organic matter (CDOM), suggesting that certain microbes may be capable of altering fractions of this ostensibly recalcitrant organic matter. Furthermore, the microbial response to the lignin-amended treatments appears to be taxon-specific. Two phyla of Archaea, Euryarchaeota and Thaumarchaeota, exhibited an increase in abundance of 7-fold and 28-fold (from 2.42 × 106 cells L–1 to 1.72 × 107 cells L–1, and from 1.60 × 106 cells L–1 to 4.54 × 107 cells L–1, respectively), over 4 days of incubation in lignin-amended treatments. Additionally, an increase of 11-fold and 13-fold (from 2.93 × 106 cells L–1 to 3.30 × 107 cells L–1, and from 3.26 × 106 cells L–1 to 4.28 × 107 cells L–1, respectively), was observed in the abundance of these phyla in treatments containing lignin with added nitrogen and phosphorus, thus raising questions regarding primary and/or secondary responses to lignin degradation. Our findings indicate that marine bacteria and archaea play a role in the transformation of the optical properties of lignin in the open ocean and that they may serve as a potential sink for a portion of the lignin macromolecule.

Description: Multidisciplinary ocean observing activities provide critical ocean information to satisfy ever-changing socioeconomic needs and require coordinated implementation. The upper oxycline (transition between high and low oxygen waters) is fundamentally important for the ecosystem structure and can be a useful proxy for multiple observing objectives connected to eastern boundary systems (EBSs) that neighbor oxygen minimum zones (OMZs). The variability of the oxycline and its impact on the ecosystem (VOICE) initiative demonstrates how societal benefits drive the need for integration and optimization of biological, biogeochemical, and physical components of regional ocean observing related to EBS. In liaison with the Global Ocean Oxygen Network, VOICE creates a roadmap toward observation-model syntheses for a comprehensive understanding of selected oxycline-dependent objectives. Local to global effects, such as habitat compression or deoxygenation trends, prompt for comprehensive observing of the oxycline on various space and time scales, and for an increased awareness of its impact on ecosystem services. Building on the Framework for Ocean Observing (FOO), we present a first readiness level assessment for ocean observing of the oxycline in EBS. This was to determine current ocean observing design and future needs in EBS regions (e.g., the California Current System, the Equatorial Eastern Pacific off Ecuador, the Peru–Chile Current system, the Northern Benguela off Namibia, etc.) building on the FOO strategy. We choose regional champions to assess the ocean observing design elements proposed in the FOO, namely, requirement processes, coordination of observational elements, and data management and information products and the related best practices. The readiness level for the FOO elements was derived for each EBS through a similar and very general ad hoc questionnaire. Despite some weaknesses in the questionnaire design and its completion, an assessment was achievable. We found that fisheries and ecosystem management are a societal requirement for all regions, but maturity levels of observational elements and data management and information products differ substantially. Identification of relevant stakeholders, developing strategies for readiness level improvements, and building and sustaining infrastructure capacity to implement these strategies are fundamental milestones for the VOICE initiative over the next 2–5 years and beyond.

Description: Dissolved organic carbon (DOC) plays critical roles in marine carbon cycling, but its sources and sinks remain uncertain. In this study, we monitored DOC exudation rates of Sargassum natans under visible light (lambda 〉 390 nm) and solar radiation. DOC release rates ranged from 7 to 10 mu g C g(biomass)(-1) hr(-1) (wet weight) under visible light, but increased to 23 to 41 mu g C g(biomass)(-1) hr(-1) when exposed to natural sunlight. Results indicate that DOC released by Sargassum could amount to 0.3 to 1.2 Tg C/year, potentially contributing significantly to the marine DOC pool in the Gulf of Mexico and Western North Atlantic. We employed the Folin-Ciocalteu phenolic content method, nuclear magnetic resonance (NMR) spectroscopy, and ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) to characterize the diverse pool of organic compounds exuded from Sargassum. Results from these complementary methods showed that Sargassum release large quantities of phlorotannins, a class of polyphenols that have very similar properties to terrestrial DOC. These phlorotannins and their oxygenated phenolic derivatives exhibit a high hydrogen deficiency and functionalization (i.e., 4 to 6 oxygen atoms per aromatic ring), representing 5 to 18% of the released DOC isolated by solid phase extraction. Thus, Sargassum is the largest biological source of open ocean polyphenols recorded to date. The amount of polyphenolic DOC released by Sargassum challenges previous beliefs that all polyphenols found within the oceans are remnants of terrestrial organic matter, although the stability of phlorotannins and their derivatives needs to be further evaluated.

Description: We present a three-dimensional gas hydrate systems model of the southern Hikurangi subduction margin in eastern New Zealand. The model integrates thermal and microbial gas generation, migration, and hydrate formation. Modeling these processes has improved the understanding of factors controlling hydrate distribution. Three spatial trends of concentrated hydrate occurrence are predicted. The first trend (I) is aligned with the principal deformation front in the overriding Australian plate. Concentrated hydrate deposits are predicted at or near the apexes of anticlines and to be mainly sourced from focused migration and recycling of microbial gas generated beneath the hydrate stability zone. A second predicted trend (II) is related to deformation in the subducting Pacific plate associated with former Mesozoic subduction beneath Gondwana and the modern Pacific-Australian plate boundary. This trend is enhanced by increased advection of thermogenic gas through permeable layers in the subducting plate and focused migration into the Neogene basin fill above Cretaceous-Paleogene structures. The third trend (III) follows the northern margin of the Hikurangi Channel and is related to the presence of buried strata of the Hikurangi Channel system. The predicted trends are consistent with pronounced seismic reflection anomalies related to free gas in the pore space and strength of the bottom-simulating reflection. However, only trend I is also associated with clear and widespread seismic indications of concentrated gas hydrate. Total predicted hydrate masses at the southern Hikurangi Margin are between 52,800 and 69,800 Mt. This equates to 3.4–4.5 Mt hydrate/km2, containing 6.33 × 108–8.38 × 108 m3/km2 of methane.

Description: Global climatic changes during the last Glacial and Deglacial have been related to variations of the Atlantic Meridional Overturning Circulation (AMOC). Here, we present new and refined 231Pa/230Th down‐core profiles extending back to 30 ka BP from the northwestern Atlantic along the Atlantic Deep Western Boundary Current (DWBC), which is the main component of the southward deep backflow of the AMOC. Besides the well‐known Bermuda Rise records, available high‐resolution 231Pa/230Th data in the northwestern Atlantic are still sparse. Our new records along with reconstructions of deep water provenance from Nd isotopes constrain the timing and magnitude of past changes in AMOC from an additional northwestern Atlantic region forming a depth transect between 3000 and 4760 m water depth. Our extended and improved dataset confirms the weakening of the AMOC during deglacial cold spells such as Heinrich Event 1 and the Younger Dryas interrupted by a reinvigoration during the Bølling‐Allerød interstadial as seen in the prominent 231Pa/230Th records from the Bermuda Rise. However, in contrast to the Bermuda Rise records we find a clearly reduced circulation strength during the Last Glacial Maximum in the deep Atlantic.

Description: Corals exert a strong biological control over their calcification processes, but there is a lack of knowledge on their capability of long-term acclimatization to ocean acidification (OA). We used a dual geochemical proxy approach to estimate the calcifying fluid pH (pHcf) and carbonate chemistry of a Mediterranean coral (Balanophyllia europaea) naturally growing along a pH gradient (range: pHTS 8.07–7.74). The pHcf derived from skeletal boron isotopic composition (δ11B) was 0.3–0.6 units above seawater values and homogeneous along the gradient (mean ± SEM: Site 1 = 8.39 ± 0.03, Site 2 = 8.34 ± 0.03, Site 3 = 8.34 ± 0.02). Also carbonate ion concentration derived from B/Ca was homogeneous [mean ± SEM (μmol kg–1): Site 1 = 579 ± 34, Site 2 = 541 ± 27, Site 3 = 568 ± 30] regardless of seawater pH. Furthermore, gross calcification rate (GCR, mass of CaCO3 deposited on the skeletal unit area per unit of time), estimated by a “bio-inorganic model” (IpHRAC), was homogeneous with decreasing pH. The homogeneous GCR, internal pH and carbonate chemistry confirm that the features of the “building blocks” – the fundamental structural components – produced by the biomineralization process were substantially unaffected by increased acidification. Furthermore, the pH up-regulation observed in this study could potentially explain the previous hypothesis that less “building blocks” are produced with increasing acidification ultimately leading to increased skeletal porosity and to reduced net calcification rate computed by including the total volume of the pore space. In fact, assuming that the available energy at the three sites is the same, this energy at the low pH sites could be partitioned among fewer calicoblastic cells that consume more energy given the larger difference between external and internal pH compared to the control, leading to the production of less building blocks (i.e., formation of pores inside the skeleton structure, determining increased porosity). However, we cannot exclude that also dissolution may play a role in increasing porosity. Thus, the ability of scleractinian corals to maintain elevated pHcf relative to ambient seawater might not always be sufficient to counteract declines in net calcification under OA scenarios.

Description: Gelatinous zooplankton (Cnidaria, Ctenophora, and Urochordata, namely, Thaliacea) are ubiquitous members of plankton communities linking primary production to higher trophic levels and the deep ocean by serving as food and transferring “jelly‐carbon” (jelly‐C) upon bloom collapse. Global biomass within the upper 200 m reaches 0.038 Pg C, which, with a 2–12 months life span, serves as the lower limit for annual jelly‐C production. Using over 90,000 data points from 1934 to 2011 from the Jellyfish Database Initiative as an indication of global biomass (JeDI: http://jedi.nceas.ucsb.edu, http://www.bco‐dmo.org/dataset/526852), upper ocean jelly‐C biomass and production estimates, organism vertical migration, jelly‐C sinking rates, and water column temperature profiles from GLODAPv2, we quantitatively estimate jelly‐C transfer efficiency based on Longhurst Provinces. From the upper 200 m production estimate of 0.038 Pg C year−1, 59–72% reaches 500 m, 46–54% reaches 1,000 m, 43–48% reaches 2,000 m, 32–40% reaches 3,000 m, and 25–33% reaches 4,500 m. This translates into ~0.03, 0.02, 0.01, and 0.01 Pg C year−1, transferred down to 500, 1,000, 2,000, and 4,500 m, respectively. Jelly‐C fluxes and transfer efficiencies can occasionally exceed phytodetrital‐based sediment trap estimates in localized open ocean and continental shelves areas under large gelatinous blooms or jelly‐C mass deposition events, but this remains ephemeral and transient in nature. This transfer of fast and permanently exported carbon reaching the ocean interior via jelly‐C constitutes an important component of the global biological soft‐tissue pump, and should be addressed in ocean biogeochemical models, in particular, at the local and regional scale.

Description: Sea surface salinity (SSS) is an important variable in the global ocean circulation. However, decadal to interdecadal changes in SSS are not well understood due to the lack of instrumental data. Here we reconstruct SSS from a paired, bimonthly resolved coral δ18O and Sr/Ca record from La Reunion Island that extends from 1913 to 1995. Coral Sr/Ca correlates with regional sea surface temperature (SST) back to 1966, when instrumental coverage is good, while coral δ18O does not. The slope of the monthly (annual mean) coral Sr/Ca-SST regression is −0.040 mmol/mol per 1 °C (−0.068 mmol/mol per 1 °C) consistent with published estimates of the Sr/Ca-SST relationship. Coral Sr/Ca suggest a warming of 0.39 °C since 1913. δ18O seawater is calculated by subtracting the temperature component from measured coral δ18O, using coral Sr/Ca as well as historical SST products. The derived δ18O seawater reconstructions are correlated (r 〉 0.6), and all show a significant shift in the midtwentieth century (−0.17‰ to −0.19‰), indicating a freshening of SSS by 0.7 psu. However, the timing of this shift depends on the temperature component and varies from 1947 (δ18O seawater calculated with historical SST) to the late 1950s (δ18O seawater calculated with coral Sr/Ca). Coral Sr/Ca shows warm temperature anomalies in the mid-1950s, while historical SST products show warm anomalies from 1940 to 1945 followed by cooling in the 1950s, a pattern typical for the World War II bias. This suggests that historical SST may bias reconstructions of δ18O seawater and SSS from corals.

Description: The ability of state-of-the-art regional climate models (RCMs) to simulate the trends of intense cyclone activity in the Arctic is assessed based on an ensemble of 13 simulations from 11 models from the Arctic-CORDEX initiative. Some models employ large-scale spectral nudging techniques. Cyclone characteristics simulated by the ensemble in winter and summer are compared with the results from four reanalyses (ERA-Interim, NCEP-CFSR, NASA-MERRA2 and JMA-JRA55) in winter and summer for 1981-2010 period.

Description: The presence of optically active water constituents is known to attenuate the light penetration in the ocean and impact the ocean heat content. Here, we investigate the influence of colored dissolved organic matter (CDOM) and total suspended matter (TSM) on the radiative heating of the Laptev Sea shelf waters. The Laptev Sea region is heavily influenced by the Lena River, one of the largest river systems in the Arctic region. We simulate the radiative heating by using a coupled atmosphere-ocean radiative transfer model (RTM) and in situ measurements from the TRANSDRIFT XVII expedition carried out in September 2010. The results indicate that CDOM and TSM have significant influence on the energy budget of the Laptev Sea shelf waters, absorbing most of the solar energy in the first 2 m of the water column. In the station with the highest CDOM absorption (aCDOM(443) = 1.77 m−1) ~43% more energy is absorbed in the surface layer compared to the station with the lowest aCDOM(443) (~0.2 m−1), which translates to an increased radiative heating of ~0.6°C/day. The increased absorbed energy by the water constituents also implies increased sea ice melt rate and changes in the surface heat fluxes to the atmosphere. By using satellite remote sensing and RTM we quantify the spatial distribution of the radiative heating in the Laptev Sea for a typical summer day. The combined use of satellite remote sensing, RT modeling and in situ observations can be used to improve parameterization schemes in atmosphere-ocean circulation models to assess the role of the ocean in the effect of Arctic amplification.

Description: The spatial pattern of the first mode of interannual variability associated with the East Asian summer monsoon (EASM), obtained from a multivariate Empirical Orthogonal Functions (MV-EOF) analysis, corresponds to the Pacific–Japan (PJ) pattern and is referred to as the PJ-mode. The present study investigates the interannual variation of the PJ-mode from the perspective of the intraseasonal timescale. In particular, the impact of the Madden–Julian oscillation (MJO) on the interannual variation of the PJ-mode is investigated. The results show that the MJO has a significant influence on the interannual variation of the PJ-mode mainly in the lower troposphere (850 hPa) and that the former accounts for approximately 11% of the amplitude of the latter. The major part of the contribution comes from a change in frequency of the different phases of the MJO, especially that of MJO phase 6. This suggests that intraseasonal variation of the convection anomalies over the tropical eastern Indian and western Pacific Oceans plays an important role in the interannual variation of the PJ-mode. In addition, MJO phase 7 also contributes to the interannual variability of the PJ-mode, in this case induced by both the change in frequency and the change in circulation anomalies associated with MJO phase 7.

Description: Aim: Numerous regions worldwide are highly impacted by anthropogenic activities and globalization, with climate change and species introductions being among the greatest stressors to biodiversity and ecosystems. A main donor region of non‐indigenous species (NIS) for numerous European water bodies, as well as in the North American Great Lakes is the Ponto‐Caspian region (i.e., Black, Azov and Caspian Seas), with some of those species having significant impact on local communities and ecosystem functioning. Location: Northern European, Ponto‐Caspian and North American regions. Methods: To determine environmental tolerance of native species and related NIS under current and future global warming scenarios of the Baltic Sea, we conducted common garden experiments to test temperature tolerance of three euryhaline gammarid species: one Baltic (Gammarus oceanicus), one Ponto‐Caspian (Pontogammarus maeoticus) and one North American species (Gammarus tigrinus) in two different salinities. Results: Our results determined that mortality of P. maeoticus in all temperature treatments (i.e., increased, control, and decreased) at the end of both experiments (i.e., conducted in salinities of 10 and 16 g/kg) was lower when compared to mortality of G. oceanicus and (c) G. tigrinus. The highest mortality was observed for G. oceanicus, reaching 100% in both experiments in the increased temperature treatment. Main conclusions: Due to the high environmental tolerance of the Ponto‐Caspian species tested in this study, as well as the fact that Ponto‐Caspian species evolved in environmentally variable habitats and currently inhabit warmer waters than species from North America and Northern Europe, we suggest that species from the Ponto‐Caspian region may benefit from global warming when invading new areas. Those new invasions may, in the best case scenario, increase biodiversity of the Baltic Sea. However, if notorious invaders arrive, they may have a significant impact on local communities and ecosystem functioning.

Description: This book includes invited contributions presenting the latest research on the oceanography and environment of the Red Sea. In addition to covering topics relevant to research in the region and providing insights into marine science for non-experts, it is also of interest to those involved in the management of coastal zones and encourages further research on the Red Sea