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  • Cell Line  (524)
  • Environmental management
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  • Nature Publishing Group (NPG)  (548)
  • Cham : Springer  (47)
  • Tokyo : Springer  (9)
  • 1
    Unknown
    Cham : Springer
    Keywords: Environment ; Applied ecology ; Biodiversity ; Landscape ecology ; Environmental management ; Nature conservation ; Environment ; Nature Conservation ; Environmental Management ; Biodiversity ; Landscape Ecology ; Applied Ecology
    Description / Table of Contents: Part I  - The Theory of Rewilding --- 1. Rewilding Abandoned Landscapes in Europe --- 2. European Wilderness in a Time of Farmland Abandonment --- 3. Ecosystem Services: the Opportunities of Rewilding in Europe --- Part II - Rewilding and Biodiversity --- 4. Bringing Large Mammals Back: Large Carnivores in Europe --- 5. Top Scavengers in a Wilder Europe --- 6. Rewilding: Pitfalls and Opportunities for Moths and Butterflies --- 7. Vegetation Restoration and Other Actions to Enhance Wildlife in European Agricultural Landscapes --- 8. Maintaining Disturbance-dependent Habitats.- Part III - Rewillding in Practice --- 9. Rewilding Europe: A New Strategy for an Old Continent --- 10. Preparing a New Generation of Wilderness Entrepreneurs --- 11. Towards a European Policy for Rewilding --- Index
    Pages: Online-Ressource (XXI, 227 pages) , 44 illustrations, 43 illustrations in color
    ISBN: 9783319120393
    Language: English
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  • 2
    Unknown
    Cham : Springer
    Keywords: Environment ; Ecology ; Climate change ; Environmental law ; Environmental policy ; Environmental management ; Environment ; Environmental Management ; Environmental Law/Policy/Ecojustice ; Ecology ; Climate Change
    Description / Table of Contents: 1. Conceptual development toward a rangeland systems framework --- Part: 1 Processes --- 2. Woody plant encroachment --- 3. Ecohydrology: processes and implications for rangelands --- 4. Soil and belowground processes --- 5. Structural heterogeneity as the basis for rangeland management --- 6. Non-equilibrium ecology and resilience theory --- 7. Ecological consequences of climate change on rangelands --- Part: 2 Management --- 8. Rangelands as social-ecological systems --- 9. State and transition models: theory, applications, and challenges --- 10. Livestock production systems --- 11. Adaptive management of rangeland systems --- 12. Managing the livestock-wildlife interface on rangelands --- Part: 3 Challenges --- 13. Invasive plant species and novel rangeland systems --- 14. Rangeland ecosystem services: nature´s supply and humans´ demand --- 15. Managing climate change risks in rangeland systems --- 16. Monitoring protocols: options, approaches, implementation, benefits --- 17. Rangeland systems in developing nations: conceptual advances and societal implications
    Pages: Online-Ressource (XV, 661 pages) , 101 illustrations, 69 illustrations in color
    ISBN: 9783319467092
    Language: English
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  • 3
    Keywords: Earth sciences ; Environmental management ; Hydrogeology ; Sustainable development ; Economic growth ; Earth Sciences ; Hydrogeology ; Water Policy/Water Governance/Water Management ; Economic Growth ; Sustainable Development
    Description / Table of Contents: From the Contents: Overview concepts, approaches and challenges of integrated groundwater management --- Disentangling the complexity of a groundwater dependent socio-ecological system --- The scale of the groundwater issue internationally --- Groundwater law --- Groundwater regulation and integrated water planning
    Pages: Online-Ressource (XIII, 762 pages) , 101 illustrations
    ISBN: 9783319235769
    Language: English
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  • 4
    Keywords: Environment ; Environmental management ; Political science ; Wildlife ; Fish ; Marine sciences ; Freshwater ; Environment ; Environmental Management ; Political Science ; Water Policy/Water Governance/Water Management ; Marine & Freshwater Sciences ; Fish & Wildlife Biology & Management
    Description / Table of Contents: Chapter 1. Environmental Governance of the Baltic Sea: Identifying Key Challenges Research Topics and Analytical Approaches. Part 1: Interdisciplinary Case Studies of Environmental Governance --- Chapter 2. Eutrophication and the Ecosystem Approach to Management: A Case Study of Baltic Sea Environmental Governance --- Chapter 3. Fisheries: A Case Study of Baltic Sea Environmental Governance --- Chapter 4. Biological Invasions: a Case Study of Baltic Sea Environmental Governance --- Chapter 5. Governance of Chemicals in the Baltic Sea Region: A Study of Three Generations of Hazardous Substances --- Chapter 6. Oil Spills from Shipping: A Case Study of the Governance of Accidental Hazards and Intentional Pollution in the Baltic Sea --- Part 2: Cross-Case Analysis of Key Environmental Governance Challenges --- Chapter 7. The Ecosystem Approach to Management in Baltic Sea Governance: Towards Increased Reflexivity? --- Chapter 8. Science-Policy Interfaces in Baltic Sea Environmental Governance: Towards Regional Cooperation and Management of Uncertainty? --- Chapter 9. Risk Communication and the Role of the Public: Towards Inclusive Environmental Governance of the Baltic Sea? --- Chapter 10. Seeking Pathways Towards Improved Environmental Governance of the Baltic Sea
    Pages: Online-Ressource (XIX, 253 pages) , 10 illustrations, 3 illustrations in color
    ISBN: 9783319270067
    Language: English
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  • 5
    Keywords: Life sciences ; Agriculture ; Climate change ; Environmental management ; Soil science ; Soil conservation ; Air pollution ; Life Sciences ; Agriculture ; Climate Change ; Atmospheric Protection/Air Quality Control/Air Pollution ; Soil Science & Conservation ; Environmental Management
    Description / Table of Contents: Chapter 1 Introduction to the SAMPLES Approach --- Chapter 2 Targeting Landscapes to Identify Mitigation Options --- Chapter 3 Determining Greenhouse Gas Emissions and Removals Associated with Land Use and Land Cover Change --- Chapter 4 Quantifying Greenhouse Gas Emissions from Managed and Natural Soils --- Chapter 5 A Comparison of Methodologies for Measuring Methane Emissions from Ruminants --- Chapter 6 Quantifying Tree Biomass Carbon Stocks and Fluxes in Agricultural Landscapes --- Chapter 7 Methods for Smallholder Quantification of Soil Carbon Stocks and Stock Changes --- Chapter 8 Yield Estimation of Food and Non-Food Crops in Smallholder Production Systems --- Chapter 9 Scaling Point and Plot Measurements of Greenhouse Gas Fluxes, Balances and Intensities to Whole Farms and Landscapes --- Chapter 10 Methods for Environment-Productivity Trade-off Analysis in Agricultural Systems
    Pages: Online-Ressource (XV, 203 pages) , 33 illustrations, 27 illustrations in color
    ISBN: 9783319297941
    Language: English
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  • 6
    Keywords: Marine Sciences ; Environmental management ; Atmospheric Sciences ; Marine & Freshwater Sciences ; Environmental Management
    Description / Table of Contents: Introduction to the Assessment --- Past and Current Climate Change --- Past and Current Changes in the North Sea (and interface regions) --- Climate Change Projections --- Impacts of Current and Future Climate Change in Ecosystems --- Climate Impacts on Socio-economy
    Pages: Online-Ressource (XLV, 528 pages) , 277 illustrations, 215 illustrations in color
    ISBN: 9783319397450
    Language: English
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  • 7
    Keywords: Environmental management ; Cultural heritage ; Tourism ; Management ; Nature conservation ; Sustainable development ; Development economics ; Economics ; Development Economics ; Water Policy/Water Governance/Water Management ; Sustainable Development ; Nature Conservation ; Cultural Heritage ; Tourism Management
    Description / Table of Contents: Introduction --- The Jordan Valley --- Projections And Objectives --- Meeting The Strategic Planning Objectives --- The Year 2050 --- Final Conclusions And Recommendations --- Colophon.
    Pages: Online-Ressource (XLII, 239 pages) , 181 illustrations, 179 illustrations in color
    ISBN: 9783319300368
    Language: English
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  • 8
    Keywords: Earth sciences ; Environmental management ; Hydrogeology ; Sustainable development ; Economic growth ; Earth Sciences ; Hydrogeology ; Water Policy/Water Governance/Water Management ; Economic Growth ; Sustainable Development
    Description / Table of Contents: From the Contents: Overview concepts, approaches and challenges of integrated groundwater management --- Disentangling the complexity of a groundwater dependent socio-ecological system --- The scale of the groundwater issue internationally --- Groundwater law --- Groundwater regulation and integrated water planning
    Pages: Online-Ressource (XIII, 762 pages) , 101 illustrations
    ISBN: 9783319235769
    Language: English
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  • 9
    Keywords: Earth sciences ; Physical geography ; Environmental management ; Sustainable development ; Earth Sciences ; Earth System Sciences ; Environmental Management ; Sustainable Development
    Description / Table of Contents: Managing Environmental Risks and Promoting Sustainability: Science Advancement and Leadership Development --- Biodiversity Agriculture Supports Human Populations --- Conservation and Sustainable Management of Soil Biodiversity for Agricultural Productivity --- Conservation Tillage Assessment For Mitigating Greenhouse Gas Emission In Rainfed Agro-Ecosystem --- Improving Biodiversity in Rice Paddy Fields to Promote Land Sustainability --- Agroforestry Models for Promoting Effective Risk Management and Building Sustainable Communities --- Managing Environmental Risks and Promoting Sustainability: Conservation of Forest Resources in Madagascar --- Community-Based Mangrove Forest Management in Thailand: Key Lesson Learned for Environmental Risk Management --- Necessity of Adaptive Risk Management for Fisheries and Wildlife --- Valuation of Non-Marketed Agricultural Ecosystem Services and Food Security in Southeast Asia --- Emerging Socio-Economic and Environmental Issues Affecting Food Security: A Case Study of Silang-Santa Rosa Subwatershed --- Strengthening the Capacity of Flood-Affected Rural Communities in Padang Terap, State of Kedah, Malaysia --- Mitigating Coastal Erosion in Fort Dauphin, Madagascar --- Risk Management of Chemical Pollution: Principles from the Japanese Experience --- Research on the Sod Between Chlorophyll-a and Organic Matter BOD, COD, Phosphorus and Total Nitrogen in Stagnant Lake Basins --- Managing Construction Development Risks to the Environment --- Ecosystem Restoration Using the Near-Natural Method in Shanghai --- Sustainable Management of Urban Green Environments: Challenges and Opportunities --- Environment and Social Capacity Assessment for Sustainability Promotion and Risk Management --- Rural Landscape Conservation in Japan: Lessons from the Satoyama Conservation Program in Kanagawa Prefecture --- Enhancing Students’ Ecological Thinking to Improve Understanding of Environmental Risk --- Interactive Multimedia Education System (IMES) as a International Education Platform
    Pages: Online-Ressource (XV, 286 pages) , 89 illustrations, 70 illustrations in color
    ISBN: 9784431548041
    Language: English
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  • 10
    Unknown
    Cham : Springer
    Keywords: Environmental management ; International relations ; Behavioral sciences ; Environmental law ; Environmental policy ; Water ; Water Policy/Water Governance/Water Management ; Environmental Law/Policy/Ecojustice ; Environmental Management ; International Relations ; Behavioral Sciences
    Description / Table of Contents: 1. Introduction and Reflections --- 2. The Establishment of Catchment Management Agencies in South Africa with Reference to the Flussgebietsgemeinschaft Elbe: Some Practical Considerations --- 3. Towards Inclusive Water Governance: OECD Evidence and Key Principles of Stakeholder Engagement in the Water Sector --- 4. Free-Market Economics and Developmental Statism as Political Paradigms: Implications for Water Governance Theory and Practice in Developing Countries --- 5. Urban Water Governance as a Function of the “Urban Hydrosocial Transition” --- 6. Urban Water Governance for the 21st Century: A Portfolio-Based Approach to Planning and Management --- 7. Rights-Based Freshwater Governance for the 21st Century: Beyond an Exclusionary Focus on Domestic Water uses --- 8. Inclusive Transboundary Water Governance --- 9. Mechanisms for Inclusive Governance --- 10. Water Integrity - from Concept to Practice --- 11. Addressing the Groundwater Governance Challenge: A Call from the “Groundwater Governance: A Global Framework for Action” Project --- 12. Water Governance Futures in South Asia and Southern Africa: Déjà vu all Over Again?
    Pages: Online-Ressource (XXVII, 250 pages) , 39 illustrations, 28 illustrations in color
    ISBN: 9783319433509
    Language: English
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  • 11
    Keywords: Environment ; Climate change ; Environmental management ; Sustainable development ; Environment ; Climate Change ; Sustainable Development ; Climate Change/Climate Change Impacts ; Environmental Management
    Description / Table of Contents: 1. Introduction --- 2. Action on Climate Change: What Does it Mean and Where Does it Lead To? --- Part 1. Policy --- 3. Mainstreaming Impact Evidence in Climate Change and Sustainable Development --- 4. Pathway to Impact: Supporting and Evaluating Enabling Environments for Research for Development --- 5. Lessons from Taking Stock of 12 years of Swiss International Cooperation on Climate Change --- 6. An Analytical Framework for Evaluating a Diverse Climate Change Portfolio --- 7. Enhancing the Joint Crediting Mechanism MRV to Contribute to Sustainable Development --- Part 2. Climate Change Mitigation --- 8. Using Mixed Methods to Assessing Trade-offs Between Agricultural Decisions and Deforestation --- 9. Methodological Approach of the GEF IEO’s Climate Change Mitigation Impact Evaluation: Assessing Progress in Market Change for Reduction of CO2 Emissions --- 10. Integrating Avoided Emissions in Climate Change Evaluation Policies for LDCs: The Case of Passive Solar Houses in Afghanistan --- 11. Sustainable Development, Climate Change, and Renewable Energy in Rural Central America --- 12. Unpacking the Black Box of Technology Distribution, Development Potential and Carbon Markets Benefits --- Part 3. Climate Change Adaptation.-13. What do Evaluations Tell Us About Climate Change Adaptation? Meta-Analysis with a Realist Approach --- 14. Adaptation Processes in Agriculture and Food Security: Insights from Evaluating Behavioral Changes in West Africa --- 15. Using Participatory Approaches in Measuring Resilience and Development in Isiolo County, Kenya --- 16. Evaluating Climate Change Adaptation in Practice: A Child-Centred, Community-Based Project in the Philippines --- 17. Drought Preparedness Policies and Climate Change Adaptation and Resilience Measures in Brazil: An Institutional Change Assessment --- 18. The Adaptation M&E Navigator: A Decision Support Tool for the Selection of Suitable Approaches to Monitor and Evaluate Adaptation to Climate Change
    Pages: Online-Ressource (XXIV, 355 pages) , 44 illustrations, 36 illustrations in color
    ISBN: 9783319437026
    Language: English
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  • 12
    Keywords: Environment ; Radiation protection ; Radiation ; Safety measures ; Environmental management ; Environmental pollution ; Environment ; Effects of Radiation/Radiation Protection ; Environmental Management ; Terrestrial Pollution
    Description / Table of Contents: Foreword --- Preface --- Cooperators --- Part 1 Radioactivity in the Terrestrial Environment --- Part 2 Decontamination and Radioactive Waste --- Part 3 Environmental Radiation and External Exposure --- Part 4 Radioactivity in Foods and Internal Exposure
    Pages: Online-Ressource (XIII, 232 pages) , 75 illustrations, 32 illustrations in color
    ISBN: 9784431558484
    Language: English
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  • 13
    Keywords: Environment ; Nuclear energy ; Natural disasters ; Probabilities ; Quality control ; Reliability ; Industrial safety ; Environmental management ; Environment ; Environmental Management ; Nuclear Energy ; Natural Hazards ; Quality Control, Reliability, Safety and Risk ; Probability Theory and Stochastic Processes
    Description / Table of Contents: Foreword --- Preface --- Cooperators --- Part 1 Active Faults --- Part 2 Seismic Source Modeling and Seismic Motion --- Part 3 Probabilistic Risk Assessment with External Hazards --- Part 4 Nuclear Risk Governance in Society
    Pages: Online-Ressource (XII, 177 pages) , 74 illustrations, 36 illustrations in color
    ISBN: 9784431558224
    Language: English
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  • 14
    Keywords: Environment ; Environmental management ; Business ; Management science ; Law ; Building construction ; Marine sciences ; Freshwater ; Environment ; Marine & Freshwater Sciences ; Offshore Engineering ; Business and Management, general ; Law, general ; Water Policy/Water Governance/Water Management
    Description / Table of Contents: 1. Foreword --- 2. Preface --- 3. Human Marine Resource Use --- 4 Species, Techniques and System Design, Environmental Impact --- 5. Aquaculture Governance --- 6. Aquaculture Economics --- 7. Case Studies --- 8. Synthesis – Pathways Towards Sustainable Ocean Food Production
    Pages: Online-Ressource (XXII, 404 pages) , 128 illustrations, 104 illustrations in color
    ISBN: 9783319511597
    Language: English
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  • 15
    Keywords: Earth sciences ; Remote sensing ; Environmental management ; Earth Sciences ; Earth Sciences, general ; Big Data ; Remote Sensing/Photogrammetry ; Environmental Management ; Space Sciences (including Extraterrestrial Physics, Space Exploration and Astronautics)
    Description / Table of Contents: This book is published open access under a CC BY 4.0 license. Over  the  past  decades,  rapid developments in digital and sensing technologies, such  as the Cloud, Web and Internet of Things, have dramatically changed the way we live and work. The digital transformation is revolutionizing our ability to monitor our planet and transforming the  way we access, process and exploit Earth Observation data from satellites. This book reviews these megatrends and their implications for the Earth Observation community as well as the wider data economy. It provides insight into new paradigms of Open Science and Innovation applied to space data, which are characterized by openness, access to large volume of complex data, wide availability of new community tools, new techniques for big data analytics such as Artificial Intelligence, unprecedented level of computing power, and new types of collaboration among researchers, innovators, entrepreneurs and citizen scientists. In addition, this book aims to provide readers with some reflections on the future of Earth Observation, highlighting through a series of use cases not just the new opportunities created by the New Space revolution, but also the new challenges that must be addressed in order to make the most of the large volume of complex and diverse data delivered by the new generation of satellites.  
    Pages: Online-Ressource (VIII, 332 pages) , 116 illustrations, 111 illustrations in color
    ISBN: 9783319656335
    Language: English
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  • 16
    Keywords: Environment ; Environmental management ; Business ; Management science ; Law ; Building construction ; Marine sciences ; Freshwater ; Environment ; Marine & Freshwater Sciences ; Offshore Engineering ; Business and Management, general ; Law, general ; Water Policy/Water Governance/Water Management
    Description / Table of Contents: 1. Foreword --- 2. Preface --- 3. Human Marine Resource Use --- 4 Species, Techniques and System Design, Environmental Impact --- 5. Aquaculture Governance --- 6. Aquaculture Economics --- 7. Case Studies --- 8. Synthesis – Pathways Towards Sustainable Ocean Food Production
    Pages: Online-Ressource (XXII, 404 pages) , 128 illustrations, 104 illustrations in color
    ISBN: 9783319511597
    Language: English
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  • 17
    Keywords: Environment ; Business ethics ; Environmental sciences ; Science education ; Environmental management ; Environment ; Environmental Management ; Environmental Science and Engineering ; Science Education ; Business Ethics
    Description / Table of Contents: Asian Program for Incubation of Environmental Leaders --- Concepts of EL --- How to teach EL in a class room - Environmental Challenges and Leadership in Asia --- APIEL resonance --- Leadership Education tackling Water Environmental Issues in Arid Regions --- IPoS: Intensive Program on Sustainability --- Cambodia Considering their sustainable future --- BKK: Sustainable solid waste management in Asian developing countries --- Sustainable urban development toward Green City of the Greater Pearl River Delta, China
    Pages: Online-Ressource (XI, 140 pages) , 34 illustrations, 24 illustrations in color
    ISBN: 9784431543404
    Language: English
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  • 18
    Keywords: Earth sciences ; Environmental management ; Environmental sciences ; Geoecology ; Environmental geology ; Earth Sciences ; Environmental Science and Engineering ; Water Policy/Water Governance/Water Management ; Geoecology/Natural Processes
    Description / Table of Contents: Wetlands and Water Framework Directive: protection, management and climate change --- Synergies and Conflicts between Water Framework Directive and Natura 2000: Legal requirements, technical guidance and experiences from practice --- Can Natura 2000 Sites Benefit from River Basin Management Planning Under a Changing Climate? Lessons from Germany --- Do water management and climate-adapted management of wetlands interfere in practice? Lessons from the Biebrza Valley, Poland --- Wetlands in river valleys as an effect of fluvial processes and anthropopression --- New vision of the role of land reclamation systems in nature protection and water management
    Pages: Online-Ressource (XI, 103 pages) , 19 illustrations, 12 illustrations in color
    ISBN: 9783319137643
    Language: English
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  • 19
    Keywords: Physics ; Complexity, Computational ; Economic theory ; Social sciences ; Physics ; Data-driven Science, Modeling and Theory Building ; Methodology of the Social Sciences ; Economic Theory/Quantitative Economics/Mathematical Methods ; Operations Research/Decision Theory ; Complexity ; Computational Social Sciences
    Description / Table of Contents: Non-Equilibrium Social Science & Policy --- Economics --- Social Psychology and Narrative Economy --- Sociology and Non-Equilibrium Social Science --- Geography far from Equilibrium --- Cities in Disequilibrium --- The Evolutionary Theory of Globalization --- Systems, Networks, and Policy --- Towards a Complexity-Friendly Policy: breaking the vicious circle of equilibrium thinking in economic and public policy --- The Information Economy --- Complexity Science & the Art of Policy Making --- The Complexity of Government --- The Room Around the Elephant: Tackling Context-Dependency in the Social Sciences --- Global Systems Science and Policy --- Index.
    Pages: Online-Ressource (VIII, 232 pages)
    ISBN: 9783319424248
    Language: English
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  • 20
    Keywords: Physics ; Mathematical physics ; Quantum physics ; Physics ; Quantum Physics ; Mathematical Applications in the Physical Sciences ; History and Philosophical Foundations of Physics
    Description / Table of Contents: I The Cellular Automaton Interpretation as a general doctrine: Motivation for this work --- Deterministic models in quantum notation --- Interpreting quantum mechanics --- Deterministic quantum mechanics --- Concise description of the CA Interpretation --- Quantum gravity --- Information loss --- More problems --- Alleys to be further investigated and open questions --- Conclusions --- II Calculation Techniques: Introduction to part II --- More on cogwheels --- The continuum limit of cogwheels, harmonic rotators and oscillators --- Locality --- Fermions --- PQ theory --- Models in two space-time dimensions without interactions --- Symmetries --- The discretised Hamiltonian formalism in PQ theory --- Quantum Field Theory --- The cellular automaton --- The problem of quantum locality --- Conclusions of part II --- Some remarks on gravity in 2+1 dimensions --- A summary of our views on Conformal Gravity --- Abbreviations.
    Pages: Online-Ressource (XVIII, 298 pages) , 21 illustrations, 19 illustrations in color
    ISBN: 9783319412856
    Language: English
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  • 21
    Keywords: Environmental management ; Cultural heritage ; Tourism ; Management ; Nature conservation ; Sustainable development ; Development economics ; Economics ; Development Economics ; Water Policy/Water Governance/Water Management ; Sustainable Development ; Nature Conservation ; Cultural Heritage ; Tourism Management
    Description / Table of Contents: Introduction --- The Jordan Valley --- Projections And Objectives --- Meeting The Strategic Planning Objectives --- The Year 2050 --- Final Conclusions And Recommendations --- Colophon.
    Pages: Online-Ressource (XLII, 239 pages) , 181 illustrations, 179 illustrations in color
    ISBN: 9783319300368
    Language: English
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  • 22
    Keywords: Environment ; Climate change ; Remote sensing ; Physics ; Environment ; Climate Change ; Remote Sensing/Photogrammetry ; Energy Efficiency ; Climate Change/Climate Change Impacts ; Applied and Technical Physics
    Description / Table of Contents: Part I The Urban Heat Island – Evidence, Measures and Tools --- Forecasting Models for Urban Warming in Climate Change --- Assessment Indication and Gold Standard --- Methodologies for UHI Analysis --- Decision Support Systems for Urban Planning --- Part II Pilot Actions in European Cities --- Counteracting Urban Heat Islands: Solutions for European Cities.
    Pages: Online-Ressource (LIII, 400 pages) , 213 illustrations
    ISBN: 9783319104256
    Language: English
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  • 23
    Keywords: Geography ; Hydrology ; Environmental management ; Regional planning ; Urban planning ; Landscape ecology ; Sustainable development ; Geography ; Landscape/Regional and Urban Planning ; Hydrology/Water Resources ; Sustainable Development ; Water Policy/Water Governance/Water Management ; Landscape Ecology
    Description / Table of Contents: Part I: Introduction --- 1. Balanced Urban Development: Is it a myth or reality? - Part II: Peri-Urbansation --- 2. Re-Ruralising the Urban Edge: Lessons from Europe, USA & the Global South --- 3. Nimbyism and Nature – Whose Backyard is it Anyway? - 4. Connecting Urban and Rural Futures Through Rural Design --- 5. Archaeology and Contemporary Dynamics for More Sustainable, Resilient Cities in the Peri-Urban Interface --- 6. Decontamination of Urban Run-off: Importance and Methods --- Part III: Peri-Urban Culture and Socio-Economy --- 7. Socio-economy of Peri-Urban Areas: The Case of Lisbon Metropolitan Area --- 8. Changing Economic Scenario of the Peri-Urban Area of Udaipur City, India --- 9. Community Stakeholder Viewpoints on Issues of Urbanisation along the River Ma Oya, Sri Lanka --- Part IV: Peri-Urban Landuse Planning --- 10. The role of peri-urban land use planning in resilient urban agriculture: a case study of Melbourne, Australia --- 11. Engaging Peri-Urban Landholders in Natural Resources Management.-12. Urban Farming Master Plan in Western Sydney - From Planning to Reality --- Part V: Urban Water Security --- 13. Study of urban water bodies in view of potential for micro-climatic cooling and natural purification of waste water --- 14. Groundwater Crisis in a Mega City – A Case Study of New Delhi, India --- 15. Safe Water Supply Determinants in Peri-Urban Communities of South-East Nigeria --- 16. Risks of Coal Seam and Shale Gas Extraction on Groundwater and Aquifers in Eastern Australia --- Part VI: Wastewater and Irrigation --- 17. Use of recycled water for irrigation of open spaces: Benefits and Risks --- 18. Global Experiences on Wastewater Irrigation: Challenges and Prospects --- 19. Impacts of Wastewater Reuse on Peri-Urban Agriculture: Case Study in Udaipur City, India --- Part VII: Urban Agriculture and Food Security --- 20. Urban Agriculture in Cuba: Alternative Legal Structures, Crisis and Change --- 21. High quality agricultural land in Western Australia – A new decision tool for planning --- 22. Food Efficient Planning and Design for Peri-urban Neighbourhoods --- 23. Role of Peri-urban Areas in the Food System of Kampala, Uganda --- Part VIII: Climate Change Impacts and Adaptations --- 24. Climate Change Adaptation Planning with Peri-Urban Local Government in Victoria, Australia --- 25. Awareness of Climate Change Impacts and Adaptation at Local Level in Punjab, Pakistan --- 26. Urbanisation, Nutrition and Food Security: A Climatological Perspective --- 27. Coastal Urban and Peri-Urban Indigenous People’s Adaptive Capacity to Climate Change --- Part IX: Legal, Policy and Institutional Challenges --- 28. Effect of Social and Institutional Fragmentation on Collective Action in Peri-urban Settings --- 29. Gentrification versus Territorialisation: The Peri-Urban Agriculture Area in Beirut --- 30. Reimagining the “Peri-Urban” in the Mega-Urban Regions of Southeast Asia --- Part X: Integrated Urban Development --- 31. Sustainability of Water Resources in Peri-urban Landscapes: Learning from the Journey of Engagement --- 32. Development of Future Management Options for the Hawkesbury River --- 33. Planning Development to Reduce Mosquito Hazard in Coastal Peri-Urban Areas: Case Studies in NSW, Australia --- 34. An Integrated Simulation and Visualisation Platform for the Design of Sustainable Urban Developments in a Peri-Urban Context --- 35. Options and Strategies for Balanced Development for Liveable Cities: An Epilogue
    Pages: Online-Ressource (XXII, 601 pages) , 136 illustrations, 109 illustrations in color
    ISBN: 9783319281124
    Language: English
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  • 24
    Keywords: Earth sciences ; Remote sensing ; Environmental management ; Earth Sciences ; Earth Sciences, general ; Big Data ; Remote Sensing/Photogrammetry ; Environmental Management ; Space Sciences (including Extraterrestrial Physics, Space Exploration and Astronautics)
    Description / Table of Contents: This book is published open access under a CC BY 4.0 license. Over  the  past  decades,  rapid developments in digital and sensing technologies, such  as the Cloud, Web and Internet of Things, have dramatically changed the way we live and work. The digital transformation is revolutionizing our ability to monitor our planet and transforming the  way we access, process and exploit Earth Observation data from satellites. This book reviews these megatrends and their implications for the Earth Observation community as well as the wider data economy. It provides insight into new paradigms of Open Science and Innovation applied to space data, which are characterized by openness, access to large volume of complex data, wide availability of new community tools, new techniques for big data analytics such as Artificial Intelligence, unprecedented level of computing power, and new types of collaboration among researchers, innovators, entrepreneurs and citizen scientists. In addition, this book aims to provide readers with some reflections on the future of Earth Observation, highlighting through a series of use cases not just the new opportunities created by the New Space revolution, but also the new challenges that must be addressed in order to make the most of the large volume of complex and diverse data delivered by the new generation of satellites.  
    Pages: Online-Ressource (VIII, 332 pages) , 116 illustrations, 111 illustrations in color
    ISBN: 9783319656335
    Language: English
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  • 25
    Keywords: Environment ; Climate change ; Environmental management ; Sustainable development ; Environment ; Climate Change ; Sustainable Development ; Climate Change/Climate Change Impacts ; Environmental Management
    Description / Table of Contents: 1. Introduction --- 2. Action on Climate Change: What Does it Mean and Where Does it Lead To? --- Part 1. Policy --- 3. Mainstreaming Impact Evidence in Climate Change and Sustainable Development --- 4. Pathway to Impact: Supporting and Evaluating Enabling Environments for Research for Development --- 5. Lessons from Taking Stock of 12 years of Swiss International Cooperation on Climate Change --- 6. An Analytical Framework for Evaluating a Diverse Climate Change Portfolio --- 7. Enhancing the Joint Crediting Mechanism MRV to Contribute to Sustainable Development --- Part 2. Climate Change Mitigation --- 8. Using Mixed Methods to Assessing Trade-offs Between Agricultural Decisions and Deforestation --- 9. Methodological Approach of the GEF IEO’s Climate Change Mitigation Impact Evaluation: Assessing Progress in Market Change for Reduction of CO2 Emissions --- 10. Integrating Avoided Emissions in Climate Change Evaluation Policies for LDCs: The Case of Passive Solar Houses in Afghanistan --- 11. Sustainable Development, Climate Change, and Renewable Energy in Rural Central America --- 12. Unpacking the Black Box of Technology Distribution, Development Potential and Carbon Markets Benefits --- Part 3. Climate Change Adaptation.-13. What do Evaluations Tell Us About Climate Change Adaptation? Meta-Analysis with a Realist Approach --- 14. Adaptation Processes in Agriculture and Food Security: Insights from Evaluating Behavioral Changes in West Africa --- 15. Using Participatory Approaches in Measuring Resilience and Development in Isiolo County, Kenya --- 16. Evaluating Climate Change Adaptation in Practice: A Child-Centred, Community-Based Project in the Philippines --- 17. Drought Preparedness Policies and Climate Change Adaptation and Resilience Measures in Brazil: An Institutional Change Assessment --- 18. The Adaptation M&E Navigator: A Decision Support Tool for the Selection of Suitable Approaches to Monitor and Evaluate Adaptation to Climate Change
    Pages: Online-Ressource (XXIV, 355 pages) , 44 illustrations, 36 illustrations in color
    ISBN: 9783319437026
    Language: English
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  • 26
    Keywords: Environment ; Climate change ; Medical research ; Environmental management ; Economics ; Quality of life ; Environment ; Environmental Management ; Climate Change/Climate Change Impacts ; Quality of Life Research ; Environment Studies ; Economic Systems
    Description / Table of Contents: Part I Vulnerability of the Arctic environments. Chapter 1 Mysteries of the geological history of the Cenozoic Arctic Ocean sea ice cover --- Chapter 2 Response of Arctic alpine biota to climate change -evidence from Polar Urals GLORIA summits --- Chapter 3 The features of natural and artificial recovery in quarries of the forest-tundra zone of Western Siberia --- Chapter 4 The concept of hierarchical structure of large marine ecosystems in the zoning of Russian Arctic shelf seas --- Chapter 5 Changing climate and outbreaks of forest pest insects in a cold northern country, Finland --- Chapter 6 Wood-based energy as a strategy for climate change mitigation in the Arctic –Perspectives on assessment of climate impacts and resource efficiency with Life Cycle Assessment --- Chapter 7. Geospatial analysis of persistent organic pollutant deposits in the Arctic ecosystems and environment --- Chapter 8 Hydrological probabilistic model MARCS and its application to simulate the probability density functions of multi-year maximal runoff: the Russian Arctic as a case of study --- Chapter 9 Student contribution: Assessment of Atmospheric Circulation in the Atlantic-Eurasian Region and Arctic Using Climate Indices. The Possible Applications of these Indices in Long-term Weather Forecasts --- Chapter 10 Student contribution: Difficulties of Geological Engineering in Arctic Seas --- Part II Vulnerability of the Arctic societies. Chapter 11 The Health Transition: A challenge to indigenous peoples in the Arctic --- Chapter 12 Uncertainties in Arctic socio-economic scenarios --- Chapter 13 Importance of consideration of climate change at managing fish stocks: A case of northern Russian fisheries --- Chapter 14 Preservation of territories and traditional activities of the northern indigenous peoples in the period of the Arctic industrial development --- Chapter 15 The Arctic journey – design experiments in the north --- Chapter 16 The Bicycle and the Arctic. Resilient and sustainable transport in times of climate change --- Part III Building the long-term human capacity. Chapter 17 Human capital development in the Russian Arctic --- Chapter 18 Impact of wages on employment and migration in the High North of Russia --- chapter 19 Well-being in an Arctic city. Designing a longitudinal study on student relationships and perceived quality of life --- Chapter 20 Researching Links between Teacher Wellbeing and Educational Change: Case Studies from Kazakhstan and Sakha Republic --- chapter 21 Student contribution: Well-being at the Polish polar station, Svalbard: Adaptation to extreme environments --- Part IV Arcitc tourism. Chapter 22 Tourism futures in the Arctic --- chapter 23 Uniqueness as a draw for riding under the midnight sun --- Chapter 24 Arctic tourism: the design approach with reference to the Russian North --- Part V Arctic safety. Chapter 25 Maritime operations and emergency preparedness in the Arctic –competence standards for search and rescue operations contingencies in polar waters --- Chapter 26 Risk reduction as a result of implementation of the functional based IMO Polar Code in the Arctic cruise industry --- Chapter 27 Safety of industrial development and transportation routes in the Arctic (SITRA) -collaboration project for research and education of future High North experts --- Chapter 28 Safe Snow and Ice Construction to Arctic Conditions --- Chapter 29 The components of psychological safety of oil and gas shift workers in the Arctic --- Part VI Circumpolar, inclusive and reciprocal Arctic. Chapter 30 Where is gender? Cracking the Arctic box and its persistent “gender neutral” research agendas --- Chapter 31 Towards an Arctic awakening: Neocolonialism, sustainable development, emancipatory research, collective action, and Arctic regional policymaking
    Pages: Online-Ressource (XIV, 311 pages) , 78 illustrations, 69 illustrations in color
    ISBN: 9783319575322
    Language: English
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  • 27
    Keywords: Environment ; Business ethics ; Environmental sciences ; Science education ; Environmental management ; Environment ; Environmental Management ; Environmental Science and Engineering ; Science Education ; Business Ethics
    Description / Table of Contents: Asian Program for Incubation of Environmental Leaders --- Concepts of EL --- How to teach EL in a class room - Environmental Challenges and Leadership in Asia --- APIEL resonance --- Leadership Education tackling Water Environmental Issues in Arid Regions --- IPoS: Intensive Program on Sustainability --- Cambodia Considering their sustainable future --- BKK: Sustainable solid waste management in Asian developing countries --- Sustainable urban development toward Green City of the Greater Pearl River Delta, China
    Pages: Online-Ressource (XI, 140 pages) , 34 illustrations, 24 illustrations in color
    ISBN: 9784431543404
    Language: English
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  • 28
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    Cham : Springer
    Keywords: Environment ; Applied ecology ; Biodiversity ; Landscape ecology ; Environmental management ; Nature conservation ; Environment ; Nature Conservation ; Environmental Management ; Biodiversity ; Landscape Ecology ; Applied Ecology
    Description / Table of Contents: Part I  - The Theory of Rewilding --- 1. Rewilding Abandoned Landscapes in Europe --- 2. European Wilderness in a Time of Farmland Abandonment --- 3. Ecosystem Services: the Opportunities of Rewilding in Europe --- Part II - Rewilding and Biodiversity --- 4. Bringing Large Mammals Back: Large Carnivores in Europe --- 5. Top Scavengers in a Wilder Europe --- 6. Rewilding: Pitfalls and Opportunities for Moths and Butterflies --- 7. Vegetation Restoration and Other Actions to Enhance Wildlife in European Agricultural Landscapes --- 8. Maintaining Disturbance-dependent Habitats.- Part III - Rewillding in Practice --- 9. Rewilding Europe: A New Strategy for an Old Continent --- 10. Preparing a New Generation of Wilderness Entrepreneurs --- 11. Towards a European Policy for Rewilding --- Index
    Pages: Online-Ressource (XXI, 227 pages) , 44 illustrations, 43 illustrations in color
    ISBN: 9783319120393
    Language: English
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  • 29
    Keywords: Marine Sciences ; Environmental management ; Atmospheric Sciences ; Marine & Freshwater Sciences ; Environmental Management
    Description / Table of Contents: Introduction to the Assessment --- Past and Current Climate Change --- Past and Current Changes in the North Sea (and interface regions) --- Climate Change Projections --- Impacts of Current and Future Climate Change in Ecosystems --- Climate Impacts on Socio-economy
    Pages: Online-Ressource (XLV, 528 pages) , 277 illustrations, 215 illustrations in color
    ISBN: 9783319397450
    Language: English
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  • 30
    Keywords: Environment ; Radiation protection ; Radiation ; Safety measures ; Environmental management ; Environmental pollution ; Environment ; Effects of Radiation/Radiation Protection ; Environmental Management ; Terrestrial Pollution
    Description / Table of Contents: Foreword --- Preface --- Cooperators --- Part 1 Radioactivity in the Terrestrial Environment --- Part 2 Decontamination and Radioactive Waste --- Part 3 Environmental Radiation and External Exposure --- Part 4 Radioactivity in Foods and Internal Exposure
    Pages: Online-Ressource (XIII, 232 pages) , 75 illustrations, 32 illustrations in color
    ISBN: 9784431558484
    Language: English
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  • 31
    Keywords: Environment ; Climate change ; Remote sensing ; Physics ; Environment ; Climate Change ; Remote Sensing/Photogrammetry ; Energy Efficiency ; Climate Change/Climate Change Impacts ; Applied and Technical Physics
    Description / Table of Contents: Part I The Urban Heat Island – Evidence, Measures and Tools --- Forecasting Models for Urban Warming in Climate Change --- Assessment Indication and Gold Standard --- Methodologies for UHI Analysis --- Decision Support Systems for Urban Planning --- Part II Pilot Actions in European Cities --- Counteracting Urban Heat Islands: Solutions for European Cities.
    Pages: Online-Ressource (LIII, 400 pages) , 213 illustrations
    ISBN: 9783319104256
    Language: English
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  • 32
    Keywords: Environment ; Environmental management ; Ecotoxicology ; Waste management ; Environment ; Ecotoxicology ; Environmental Management ; Waste Management/Waste Technology
    Description / Table of Contents: Preface --- Foreword by Keith Solomon and John Giesy --- Foreword by Coordinating Board of Editors --- Ecological Risk Assessment for Chlorpyrifos in Terrestrial and Aquatic Systems in The United States – Overview and Conclusions --- Properties and Uses of Chlorpyrifos in the United States --- Fate in the Environment and Long-Range Atmospheric Transport of the Organophosphorus Insecticide, Chlorpyrifos and its Oxon in the United States --- Exposures of Aquatic Organisms to the Organophosphorus Insecticide, Chlorpyrifos Resulting from Use in the United States --- Risks to Aquatic Organisms from Use of Chlorpyrifos in the United States --- Refined Avian Risk Assessment for Chlorpyrifos in the United States --- Risk to Pollinators from the Use of Chlorpyrifos in the United States --- Index
    Pages: Online-Ressource (XVI, 269 pages) , 40 illustrations
    ISBN: 9783319038650
    Language: English
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  • 33
    Keywords: Environment ; Nuclear energy ; Natural disasters ; Probabilities ; Quality control ; Reliability ; Industrial safety ; Environmental management ; Environment ; Environmental Management ; Nuclear Energy ; Natural Hazards ; Quality Control, Reliability, Safety and Risk ; Probability Theory and Stochastic Processes
    Description / Table of Contents: Foreword --- Preface --- Cooperators --- Part 1 Active Faults --- Part 2 Seismic Source Modeling and Seismic Motion --- Part 3 Probabilistic Risk Assessment with External Hazards --- Part 4 Nuclear Risk Governance in Society
    Pages: Online-Ressource (XII, 177 pages) , 74 illustrations, 36 illustrations in color
    ISBN: 9784431558224
    Language: English
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  • 34
    Keywords: Environment ; Environmental management ; Ecotoxicology ; Waste management ; Environment ; Ecotoxicology ; Environmental Management ; Waste Management/Waste Technology
    Description / Table of Contents: Preface --- Foreword by Keith Solomon and John Giesy --- Foreword by Coordinating Board of Editors --- Ecological Risk Assessment for Chlorpyrifos in Terrestrial and Aquatic Systems in The United States – Overview and Conclusions --- Properties and Uses of Chlorpyrifos in the United States --- Fate in the Environment and Long-Range Atmospheric Transport of the Organophosphorus Insecticide, Chlorpyrifos and its Oxon in the United States --- Exposures of Aquatic Organisms to the Organophosphorus Insecticide, Chlorpyrifos Resulting from Use in the United States --- Risks to Aquatic Organisms from Use of Chlorpyrifos in the United States --- Refined Avian Risk Assessment for Chlorpyrifos in the United States --- Risk to Pollinators from the Use of Chlorpyrifos in the United States --- Index
    Pages: Online-Ressource (XVI, 269 pages) , 40 illustrations
    ISBN: 9783319038650
    Language: English
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  • 35
    Keywords: Physics ; History ; Nuclear physics ; Heavy ions ; Hadrons ; Particle acceleration ; Physics ; Nuclear Physics, Heavy Ions, Hadrons ; History and Philosophical Foundations of Physics ; Particle Acceleration and Detection, Beam Physics ; History of Science
    Description / Table of Contents: Part I Reminiscences: Rolf Hagedorn and Relativistic Heavy Ion Research.-- Part II The Hagedorn Temperature --- Part III Melting Hadrons, Boiling Quarks Heavy Ion Path to Quark-Gluon Plasma --- Acronyms
    Pages: Online-Ressource (XVI, 441 pages)
    ISBN: 9783319175454
    Language: English
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  • 36
    Keywords: Life sciences ; Agriculture ; Climate change ; Environmental management ; Soil science ; Soil conservation ; Air pollution ; Life Sciences ; Agriculture ; Climate Change ; Atmospheric Protection/Air Quality Control/Air Pollution ; Soil Science & Conservation ; Environmental Management
    Description / Table of Contents: Chapter 1 Introduction to the SAMPLES Approach --- Chapter 2 Targeting Landscapes to Identify Mitigation Options --- Chapter 3 Determining Greenhouse Gas Emissions and Removals Associated with Land Use and Land Cover Change --- Chapter 4 Quantifying Greenhouse Gas Emissions from Managed and Natural Soils --- Chapter 5 A Comparison of Methodologies for Measuring Methane Emissions from Ruminants --- Chapter 6 Quantifying Tree Biomass Carbon Stocks and Fluxes in Agricultural Landscapes --- Chapter 7 Methods for Smallholder Quantification of Soil Carbon Stocks and Stock Changes --- Chapter 8 Yield Estimation of Food and Non-Food Crops in Smallholder Production Systems --- Chapter 9 Scaling Point and Plot Measurements of Greenhouse Gas Fluxes, Balances and Intensities to Whole Farms and Landscapes --- Chapter 10 Methods for Environment-Productivity Trade-off Analysis in Agricultural Systems
    Pages: Online-Ressource (XV, 203 pages) , 33 illustrations, 27 illustrations in color
    ISBN: 9783319297941
    Language: English
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  • 37
    Keywords: Environment ; Environmental management ; Political science ; Wildlife ; Fish ; Marine sciences ; Freshwater ; Environment ; Environmental Management ; Political Science ; Water Policy/Water Governance/Water Management ; Marine & Freshwater Sciences ; Fish & Wildlife Biology & Management
    Description / Table of Contents: Chapter 1. Environmental Governance of the Baltic Sea: Identifying Key Challenges Research Topics and Analytical Approaches. Part 1: Interdisciplinary Case Studies of Environmental Governance --- Chapter 2. Eutrophication and the Ecosystem Approach to Management: A Case Study of Baltic Sea Environmental Governance --- Chapter 3. Fisheries: A Case Study of Baltic Sea Environmental Governance --- Chapter 4. Biological Invasions: a Case Study of Baltic Sea Environmental Governance --- Chapter 5. Governance of Chemicals in the Baltic Sea Region: A Study of Three Generations of Hazardous Substances --- Chapter 6. Oil Spills from Shipping: A Case Study of the Governance of Accidental Hazards and Intentional Pollution in the Baltic Sea --- Part 2: Cross-Case Analysis of Key Environmental Governance Challenges --- Chapter 7. The Ecosystem Approach to Management in Baltic Sea Governance: Towards Increased Reflexivity? --- Chapter 8. Science-Policy Interfaces in Baltic Sea Environmental Governance: Towards Regional Cooperation and Management of Uncertainty? --- Chapter 9. Risk Communication and the Role of the Public: Towards Inclusive Environmental Governance of the Baltic Sea? --- Chapter 10. Seeking Pathways Towards Improved Environmental Governance of the Baltic Sea
    Pages: Online-Ressource (XIX, 253 pages) , 10 illustrations, 3 illustrations in color
    ISBN: 9783319270067
    Language: English
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  • 38
    Keywords: Environment ; Environmental management ; Nutrition ; Medical research ; Agriculture ; Sustainable development ; Quality of life ; Environment ; Sustainable Development ; Quality of Life Research ; Water Policy/Water Governance/Water Management ; Agriculture ; Nutrition
    Description / Table of Contents: Introduction: Understanding the Complexities of Eating, Drinking, and Surviving --- Globalization and Malnutrition: Geographical Perspectives on Its Paradoxes --- Drinking Water --- The Politics and Consequences of Virtual Water Export --- Integrated Water Resources Management as a New Approach to Water Security --- Surviving as an Unequal Community: WASH for Those on the Margins --- Challenges to Food Security in a Changing World --- Moral Economies of Food in the Socialist/Post-socialist World --- The Nutrition Transition in Developing Asia: Dietary Change, Drivers and Health Impacts. Food Sovereignty and the Possibilities for an Equitable, Just and Sustainable Food System --- Food Security and Food Waste
    Pages: Online-Ressource (XI, 105 pages) , 32 illustrations in color
    ISBN: 9783319424682
    Language: English
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  • 39
    Keywords: Physics ; Matrix theory ; Algebra ; Mathematical physics ; Quantum physics ; Physics ; Quantum Physics ; Mathematical Physics ; History and Philosophical Foundations of Physics ; Linear and Multilinear Algebras, Matrix Theory
    Description / Table of Contents: Introduction --- Part I Co(X) and B(H): Classical physics on a finite phase space --- Quantum mechanics on a finite-dimensional Hilbert space --- Classical physics on a general phase space --- Quantum physics on a general Hilbert space --- Symmetry in quantum mechanics --- Part II Between Co(X) and B(H): Classical models of quantum mechanics --- Limits: Small hbar --- Limits: large N --- Symmetry in algebraic quantum theory --- Spontaneous Symmetry Breaking --- The Measurement Problem --- Topos theory and quantum logic --- Appendix A: Finite-dimensional Hilbert spaces --- Appendix B: Basic functional analysis --- Appendix C: Operator algebras --- Appendix D: Lattices and logic --- Appendix E: Category theory and topos theory --- References
    Pages: Online-Ressource (XXXVI, 861 pages) , 9 illustrations, 8 illustrations in color
    ISBN: 9783319517773
    Language: English
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  • 40
    Keywords: Physics ; Mathematical physics ; Quantum physics ; Physics ; Quantum Physics ; Mathematical Applications in the Physical Sciences ; History and Philosophical Foundations of Physics
    Description / Table of Contents: I The Cellular Automaton Interpretation as a general doctrine: Motivation for this work --- Deterministic models in quantum notation --- Interpreting quantum mechanics --- Deterministic quantum mechanics --- Concise description of the CA Interpretation --- Quantum gravity --- Information loss --- More problems --- Alleys to be further investigated and open questions --- Conclusions --- II Calculation Techniques: Introduction to part II --- More on cogwheels --- The continuum limit of cogwheels, harmonic rotators and oscillators --- Locality --- Fermions --- PQ theory --- Models in two space-time dimensions without interactions --- Symmetries --- The discretised Hamiltonian formalism in PQ theory --- Quantum Field Theory --- The cellular automaton --- The problem of quantum locality --- Conclusions of part II --- Some remarks on gravity in 2+1 dimensions --- A summary of our views on Conformal Gravity --- Abbreviations.
    Pages: Online-Ressource (XVIII, 298 pages) , 21 illustrations, 19 illustrations in color
    ISBN: 9783319412856
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  • 41
    Keywords: Physics ; Complexity, Computational ; Economic theory ; Social sciences ; Physics ; Data-driven Science, Modeling and Theory Building ; Methodology of the Social Sciences ; Economic Theory/Quantitative Economics/Mathematical Methods ; Operations Research/Decision Theory ; Complexity ; Computational Social Sciences
    Description / Table of Contents: Non-Equilibrium Social Science & Policy --- Economics --- Social Psychology and Narrative Economy --- Sociology and Non-Equilibrium Social Science --- Geography far from Equilibrium --- Cities in Disequilibrium --- The Evolutionary Theory of Globalization --- Systems, Networks, and Policy --- Towards a Complexity-Friendly Policy: breaking the vicious circle of equilibrium thinking in economic and public policy --- The Information Economy --- Complexity Science & the Art of Policy Making --- The Complexity of Government --- The Room Around the Elephant: Tackling Context-Dependency in the Social Sciences --- Global Systems Science and Policy --- Index.
    Pages: Online-Ressource (VIII, 232 pages)
    ISBN: 9783319424248
    Language: English
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  • 42
    Keywords: Physics ; Quantum optics ; Physics ; Optics, Lasers, Photonics, Optical Devices ; Quantum Optics ; Popular Science in Physics ; History and Philosophical Foundations of Physics
    Description / Table of Contents: History --- A brief history of light --- Ibn Al-Haitham – Father of modern optics --- Optical Sources --- Femtosecond light --- Laser --- LED light --- Electron optics --- Applications --- Biophotonics --- Optical communication --- Optical astronomy --- Solar cells --- Optics in Remote Sensing --- Optics in nanotechnology --- Optics in art --- Eye --- Optics in medicine --- Optical illusions --- Quantum Optics --- Optical tests of foundations of physics --- Nonlinear Optics: Historical Perspectives and New Opportunities --- Quantum communication --- Nature of photon --- Atom optics --- Coherent effects: From EIT to slow light
    Pages: Online-Ressource (XX, 504 pages) , 355 illustrations, 277 illustrations in color
    ISBN: 9783319319032
    Language: English
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  • 43
    Keywords: Sustainable development ; Environmental management ; Renewable energy sources ; Industrial management-Environmen ; Sustainable Development ; Environmental Management ; Renewable and Green Energy ; Environmental Science and Engineering ; Sustainability Management
    Description / Table of Contents: Part I: Introducing Life Cycle Management --- Introduction: Life Cycle Management --- Life Cycle Management: Implementing Sustainability in Business Practice --- Life Cycle Management as a Way to Operationalize Sustainability Within Organizations --- How to Implement Life Cycle Management in Business? --- Life Cycle Sustainability Assessment: A Tool for Exercising due Diligence in Life Cycle Management --- Life Cycle Management: Labeling, Declarations and Certifications at the Product Level —Different Approaches --- Mainstreaming the Use of Life Cycle Management in Small and Medium Sized Enterprises Using a Sector Based and Regional Approach --- Part II: Advancing the Implementation of Life Cycle Management in Business Practice --- From Projects to Processes to Implement Life Cycle Management in Business --- How to Make the LCA Team a Business Partner --- Sustainability Improvements and Life Cycle Approaches in Industry Partnerships --- Sustainable Value Creation with Life Cycle Management --- Part III: Life Cycle Management as Part of Sustainable Consumption and Production Strategies and Policies --- Hotspots Analysis: Providing the Focus for Action --- From Sustainable Production to Sustainable Consumption.-Life Cycle Management Responsibilities and Procedures in the Value Chain --- Policy Options for Life Cycle Assessment Deployment in Legislation --- Part IV: Mainstreaming and Capacity Building on Life Cycle Management --- Taking Life Cycle Management Mainstream: Integration in Corporate Finance and Accounting --- Building Organizational Capability for Life Cycle Management --- Promoting Life Cycle Thinking, Life Cycle Assessment and Life Cycle Management Within Business in Brazil --- Mainstreaming Life Cycle Sustainability Management in Rapidly Growing and Emerging Economies Through Capacity-building.-Communication and Collaboration as Essential Elements for Mainstreaming Life Cycle Management.-Part V: Implementation and Case Studies of Life Cycle Management in Different Business and Industry Sector --- Exploring Challenges and Opportunities of Life Cycle Management in the Electricity Sector --- Life Cycle Management Applied to Urban Fabric Planning --- Implementing Life Cycle Engineering in Automotive Development as a Helpful Management Tool to Support Design for Environment --- Managing Life cycle Sustainability Aspects in the Automotive Industry --- Life Cycle Management as a Way to Operationalize the Creating Shared Value Concept in the Food and Beverage Industry: A Case Study
    Pages: Online-Ressource (XIV, 520 pages) , 106 illustrations, 27 illustrations in color
    ISBN: 9783319669816
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  • 44
    Keywords: Earth sciences ; Geology ; Natural disasters ; Environmental management ; Communication ; Earth Sciences ; Natural Hazards ; Geology ; Environmental Management ; Communication Studies
    Description / Table of Contents: Part I: Bill McGuire --- Volcano Crisis Communication: Challenges and Solutions in the 21st Century --- Volcanic Gases: Silent Killers --- The Communication and Risk Management of Volcanic Ballistic Hazards --- Part One Summary: Adapting Warnings for Volcanic Hazards --- Part II: Gill Jolly --- Volcanic Unrest and Hazard Communication in Long Valley Volcanic Region, California --- Organisational Response to the 2007 Ruapehu Crater Lake Dam-Break Lahar in New Zealand: Use of Communication in Creating an Effective Response --- Social Representation of Human Resettlement Associated with Risk from Volcán de Colima, Mexico --- Part Two Summary: Observing Volcanic Crises --- Part III: Deanne Bird and Kat Haynes --- Communicating Information on Eruptions and Their Impacts from the Earliest Times Until the Late Twentieth Century --- “There’s no Plastic in Our Volcano”: A Story About Losing and Finding a Path to Participatory Volcanic Risk Management in Colombia --- Challenges of Volcanic Crises on Small Islands States --- Living with an Active Volcano: Informal and Community Learning for Preparedness in South of Japan --- Part Three Summary: Communicating into the Future. Volcanic Crisis Communication: Where Do We Go from Here?
    Pages: Online-Ressource (XV, 771 pages)
    ISBN: 9783319440972
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  • 45
    Keywords: Environment ; Renewable energy resources ; Energy policy ; Energy and state ; Ecosystems ; Renewable energy sources ; Alternate energy sources ; Green energy industries ; Environmental law ; Environmental policy ; Environmental management ; Sustainable development ; Environment ; Sustainable Development ; Energy Policy, Economics and Management ; Ecosystems ; Environmental Management ; Renewable and Green Energy ; Environmental Law/Policy/Ecojustice
    Description / Table of Contents: Preface.-Introduction.-Part 1: Biofuels and Sustainability Conceptual Framework --- Chapter 1. Sustainability Science Perspective for Biofuels [Takeuchi, Matsuda] --- Chapter 2. Stakeholder perspectives and Multilevel Governance [Shiroyama, Matsuura] --- Chapter 3. Applying stakeholder perspectives to sustainable biofuel strategy: a summary of our analyses [Shiroyama, Matsuura].-Part 2: Impacts on land use and ecosystem services --- Chapter 4. Global Economic and Environmental Impacts - Economic Impacts of biofuels and related policy [Suzuki and Takahashi] --- Chapter 5. Global Economic and Environmental Impacts - Environmental impacts of biofuel production on the GHG emission reduction [Hanaki] --- Chapter 6. Impacts at the National & Regional Scales - Land use change impacts [Hayashi] --- Chapter 7. Impacts at the National & Regional Scales - Socioeconomic impacts in East Asia [Elder, Kozima, Sano and Hayashi] --- Chapter 8. Social, Economic and Political Impacts - Socio-Political impacts to the roles of stakeholders [Shiroyama and Matsuura ] --- Chapter 9. Social, Economic and Political Impacts - Impacts on ecosystem services [Alexandros and Stromberg] --- Part 3: Sustainable biofuels strategy options --- Chapter 10. Roadmap for building sustainable strategy options - Developing sustainable strategy options [Shiroyama and Matsuura] --- Chapter 11. Roadmap for building sustainable strategy options - Application of Ontology for developing strategy options [Kozaki, Mizoguchi and Saito] --- Chapter 12. Key strategies for policy makers - Global Strategies options [Arai, Matsuda and Suzuki] --- Chapter 13. Key strategies for policy makers - Regional Strategy options for East Asia [Elder, Kozima, Sano and Hayashi] --- Chapter 14. Key strategies for policy makers - National strategy options for Japan [Shiroyama, Matsuura and Saito]
    Pages: Online-Ressource (VI, 265 pages) , 72 illustrations, 22 illustrations in color
    ISBN: 9784431548959
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  • 46
    Keywords: Geography ; Climate change ; Remote sensing ; Environmental management ; Geography ; Remote Sensing/Photogrammetry ; Environmental Management ; Climate Change/Climate Change Impacts
    Description / Table of Contents: Climate services in the Tropics --- Climate planning in medium-size cities of the Tropics --- Setting up and managing automatic weather stations for remote sites monitoring: from Niger to Nepal --- Characterization of climate risks for rice crop in Casamance --- Climate change, drought and food security: a methodology for the vulnerability analysis. The case of the West Arsi Woreda in Ethiopia --- Visualize and communicate extreme weather risk to improve urban resilience --- Climate change adaptation and resilience in Mali --- Building resilience to drought in the Sahel by early risk identification and advices --- Risk analysis and evaluation to improve climate adaptation planning in Western Niger --- A simplified hydrological method for flood risk assessment at sub-basin level in Niger --- Socio-technical transitions and resilient infrastructure: analyzing changes in access to water following infrastructure upgrade in Dar es Salaam, Tanzania --- Monitoring and evaluating advocacy and mainstreaming of climate change adaptation in Haiti --- Knowledge for transformational adaptation planning: comparing the potential of forecasting and back casting methods for assessing people vulnerability --- Possible impact of pelletized crop residues use as a fuel for cooking in Niger --- An effective Mainstreaming DRR and Resilience approach in La Paz (Mexico) and San Jose (Costa-Rica) --- Climate vulnerability reduction credits: measuring results of adaptation; potential applicability for sub-Saharan communities --- Review of pilot projects on index-based insurance in Africa: insights and lessons Learned --- A new perspective for integrating climate change in local development plans
    Pages: Online-Ressource (XVI, 372 pages) , 91 illustrations
    ISBN: 9783319590967
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  • 47
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    Cham : Springer
    Keywords: Environmental management ; International relations ; Behavioral sciences ; Environmental law ; Environmental policy ; Water ; Water Policy/Water Governance/Water Management ; Environmental Law/Policy/Ecojustice ; Environmental Management ; International Relations ; Behavioral Sciences
    Description / Table of Contents: 1. Introduction and Reflections --- 2. The Establishment of Catchment Management Agencies in South Africa with Reference to the Flussgebietsgemeinschaft Elbe: Some Practical Considerations --- 3. Towards Inclusive Water Governance: OECD Evidence and Key Principles of Stakeholder Engagement in the Water Sector --- 4. Free-Market Economics and Developmental Statism as Political Paradigms: Implications for Water Governance Theory and Practice in Developing Countries --- 5. Urban Water Governance as a Function of the “Urban Hydrosocial Transition” --- 6. Urban Water Governance for the 21st Century: A Portfolio-Based Approach to Planning and Management --- 7. Rights-Based Freshwater Governance for the 21st Century: Beyond an Exclusionary Focus on Domestic Water uses --- 8. Inclusive Transboundary Water Governance --- 9. Mechanisms for Inclusive Governance --- 10. Water Integrity - from Concept to Practice --- 11. Addressing the Groundwater Governance Challenge: A Call from the “Groundwater Governance: A Global Framework for Action” Project --- 12. Water Governance Futures in South Asia and Southern Africa: Déjà vu all Over Again?
    Pages: Online-Ressource (XXVII, 250 pages) , 39 illustrations, 28 illustrations in color
    ISBN: 9783319433509
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    Cham : Springer
    Keywords: Environment ; Ecology ; Climate change ; Environmental law ; Environmental policy ; Environmental management ; Environment ; Environmental Management ; Environmental Law/Policy/Ecojustice ; Ecology ; Climate Change
    Description / Table of Contents: 1. Conceptual development toward a rangeland systems framework --- Part: 1 Processes --- 2. Woody plant encroachment --- 3. Ecohydrology: processes and implications for rangelands --- 4. Soil and belowground processes --- 5. Structural heterogeneity as the basis for rangeland management --- 6. Non-equilibrium ecology and resilience theory --- 7. Ecological consequences of climate change on rangelands --- Part: 2 Management --- 8. Rangelands as social-ecological systems --- 9. State and transition models: theory, applications, and challenges --- 10. Livestock production systems --- 11. Adaptive management of rangeland systems --- 12. Managing the livestock-wildlife interface on rangelands --- Part: 3 Challenges --- 13. Invasive plant species and novel rangeland systems --- 14. Rangeland ecosystem services: nature´s supply and humans´ demand --- 15. Managing climate change risks in rangeland systems --- 16. Monitoring protocols: options, approaches, implementation, benefits --- 17. Rangeland systems in developing nations: conceptual advances and societal implications
    Pages: Online-Ressource (XV, 661 pages) , 101 illustrations, 69 illustrations in color
    ISBN: 9783319467092
    Language: English
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  • 49
    Keywords: Geography ; Hydrology ; Environmental management ; Regional planning ; Urban planning ; Landscape ecology ; Sustainable development ; Geography ; Landscape/Regional and Urban Planning ; Hydrology/Water Resources ; Sustainable Development ; Water Policy/Water Governance/Water Management ; Landscape Ecology
    Description / Table of Contents: Part I: Introduction --- 1. Balanced Urban Development: Is it a myth or reality? - Part II: Peri-Urbansation --- 2. Re-Ruralising the Urban Edge: Lessons from Europe, USA & the Global South --- 3. Nimbyism and Nature – Whose Backyard is it Anyway? - 4. Connecting Urban and Rural Futures Through Rural Design --- 5. Archaeology and Contemporary Dynamics for More Sustainable, Resilient Cities in the Peri-Urban Interface --- 6. Decontamination of Urban Run-off: Importance and Methods --- Part III: Peri-Urban Culture and Socio-Economy --- 7. Socio-economy of Peri-Urban Areas: The Case of Lisbon Metropolitan Area --- 8. Changing Economic Scenario of the Peri-Urban Area of Udaipur City, India --- 9. Community Stakeholder Viewpoints on Issues of Urbanisation along the River Ma Oya, Sri Lanka --- Part IV: Peri-Urban Landuse Planning --- 10. The role of peri-urban land use planning in resilient urban agriculture: a case study of Melbourne, Australia --- 11. Engaging Peri-Urban Landholders in Natural Resources Management.-12. Urban Farming Master Plan in Western Sydney - From Planning to Reality --- Part V: Urban Water Security --- 13. Study of urban water bodies in view of potential for micro-climatic cooling and natural purification of waste water --- 14. Groundwater Crisis in a Mega City – A Case Study of New Delhi, India --- 15. Safe Water Supply Determinants in Peri-Urban Communities of South-East Nigeria --- 16. Risks of Coal Seam and Shale Gas Extraction on Groundwater and Aquifers in Eastern Australia --- Part VI: Wastewater and Irrigation --- 17. Use of recycled water for irrigation of open spaces: Benefits and Risks --- 18. Global Experiences on Wastewater Irrigation: Challenges and Prospects --- 19. Impacts of Wastewater Reuse on Peri-Urban Agriculture: Case Study in Udaipur City, India --- Part VII: Urban Agriculture and Food Security --- 20. Urban Agriculture in Cuba: Alternative Legal Structures, Crisis and Change --- 21. High quality agricultural land in Western Australia – A new decision tool for planning --- 22. Food Efficient Planning and Design for Peri-urban Neighbourhoods --- 23. Role of Peri-urban Areas in the Food System of Kampala, Uganda --- Part VIII: Climate Change Impacts and Adaptations --- 24. Climate Change Adaptation Planning with Peri-Urban Local Government in Victoria, Australia --- 25. Awareness of Climate Change Impacts and Adaptation at Local Level in Punjab, Pakistan --- 26. Urbanisation, Nutrition and Food Security: A Climatological Perspective --- 27. Coastal Urban and Peri-Urban Indigenous People’s Adaptive Capacity to Climate Change --- Part IX: Legal, Policy and Institutional Challenges --- 28. Effect of Social and Institutional Fragmentation on Collective Action in Peri-urban Settings --- 29. Gentrification versus Territorialisation: The Peri-Urban Agriculture Area in Beirut --- 30. Reimagining the “Peri-Urban” in the Mega-Urban Regions of Southeast Asia --- Part X: Integrated Urban Development --- 31. Sustainability of Water Resources in Peri-urban Landscapes: Learning from the Journey of Engagement --- 32. Development of Future Management Options for the Hawkesbury River --- 33. Planning Development to Reduce Mosquito Hazard in Coastal Peri-Urban Areas: Case Studies in NSW, Australia --- 34. An Integrated Simulation and Visualisation Platform for the Design of Sustainable Urban Developments in a Peri-Urban Context --- 35. Options and Strategies for Balanced Development for Liveable Cities: An Epilogue
    Pages: Online-Ressource (XXII, 601 pages) , 136 illustrations, 109 illustrations in color
    ISBN: 9783319281124
    Language: English
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  • 50
    Keywords: Earth sciences ; Physical geography ; Environmental management ; Sustainable development ; Earth Sciences ; Earth System Sciences ; Environmental Management ; Sustainable Development
    Description / Table of Contents: Managing Environmental Risks and Promoting Sustainability: Science Advancement and Leadership Development --- Biodiversity Agriculture Supports Human Populations --- Conservation and Sustainable Management of Soil Biodiversity for Agricultural Productivity --- Conservation Tillage Assessment For Mitigating Greenhouse Gas Emission In Rainfed Agro-Ecosystem --- Improving Biodiversity in Rice Paddy Fields to Promote Land Sustainability --- Agroforestry Models for Promoting Effective Risk Management and Building Sustainable Communities --- Managing Environmental Risks and Promoting Sustainability: Conservation of Forest Resources in Madagascar --- Community-Based Mangrove Forest Management in Thailand: Key Lesson Learned for Environmental Risk Management --- Necessity of Adaptive Risk Management for Fisheries and Wildlife --- Valuation of Non-Marketed Agricultural Ecosystem Services and Food Security in Southeast Asia --- Emerging Socio-Economic and Environmental Issues Affecting Food Security: A Case Study of Silang-Santa Rosa Subwatershed --- Strengthening the Capacity of Flood-Affected Rural Communities in Padang Terap, State of Kedah, Malaysia --- Mitigating Coastal Erosion in Fort Dauphin, Madagascar --- Risk Management of Chemical Pollution: Principles from the Japanese Experience --- Research on the Sod Between Chlorophyll-a and Organic Matter BOD, COD, Phosphorus and Total Nitrogen in Stagnant Lake Basins --- Managing Construction Development Risks to the Environment --- Ecosystem Restoration Using the Near-Natural Method in Shanghai --- Sustainable Management of Urban Green Environments: Challenges and Opportunities --- Environment and Social Capacity Assessment for Sustainability Promotion and Risk Management --- Rural Landscape Conservation in Japan: Lessons from the Satoyama Conservation Program in Kanagawa Prefecture --- Enhancing Students’ Ecological Thinking to Improve Understanding of Environmental Risk --- Interactive Multimedia Education System (IMES) as a International Education Platform
    Pages: Online-Ressource (XV, 286 pages) , 89 illustrations, 70 illustrations in color
    ISBN: 9784431548041
    Language: English
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  • 51
    Unknown
    Cham : Springer
    Keywords: Environment ; Engineering economics ; Engineering economy ; Environmental management ; Waste management ; Sustainable development ; Industrial organization ; Environmental economics ; Environment ; Sustainable Development ; Waste Management/Waste Technology ; Environmental Economics ; Industrial Organization ; Engineering Economics, Organization, Logistics, Marketing ; Environmental Management
    Description / Table of Contents: Introduction --- General reflections --- The Price of Everything and the Value of Nothing: sustainability ‘after the crisis’ --- Impacts of global trade flows --- Stocks and flows in the performance economy --- The Embeddedness of carbon in UK Lifestyles --- Ethics of Industrial Ecology --- Complexity and prediction --- Urban metabolism --- Industrial Symbiosis --- Industrial Ecology and the Solidarity Economy --- Industrial Ecology in Developing Countries --- Material Flow Analysis and Waste Management --- Social sciences in Industrial Ecology --- Life Cycle Sustainability Assessment --- Prospective Models of Society’s Future Metabolism --- Planetary boundaries and sustainable business --- Working with policymakers --- Portugal’s national waste plan --- The Industrial Ecology of the automobile
    Pages: Online-Ressource (XXI, 362 pages) , 43 illustrations, 34 illustrations in color
    ISBN: 9783319205717
    Language: English
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  • 52
    Keywords: Earth sciences ; Environmental management ; Environmental sciences ; Geoecology ; Environmental geology ; Earth Sciences ; Environmental Science and Engineering ; Water Policy/Water Governance/Water Management ; Geoecology/Natural Processes
    Description / Table of Contents: Wetlands and Water Framework Directive: protection, management and climate change --- Synergies and Conflicts between Water Framework Directive and Natura 2000: Legal requirements, technical guidance and experiences from practice --- Can Natura 2000 Sites Benefit from River Basin Management Planning Under a Changing Climate? Lessons from Germany --- Do water management and climate-adapted management of wetlands interfere in practice? Lessons from the Biebrza Valley, Poland --- Wetlands in river valleys as an effect of fluvial processes and anthropopression --- New vision of the role of land reclamation systems in nature protection and water management
    Pages: Online-Ressource (XI, 103 pages) , 19 illustrations, 12 illustrations in color
    ISBN: 9783319137643
    Language: English
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  • 53
    Keywords: Physics ; Quantum field theory ; String theory ; Elementary particles (Physics) ; Physics ; Elementary Particles, Quantum Field Theory ; Quantum Field Theories, String Theory
    Description / Table of Contents: Preface --- Gauge Theories and the Standard Model --- QCD: The Theory of Strong Interactions --- The Theory of Electroweak Interactions --- References
    Pages: Online-Ressource (XIV, 173 pages) , 60 illustrations, 34 illustrations in color
    ISBN: 9783319519203
    Language: English
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  • 54
    Keywords: Earth sciences ; Remote sensing ; Environmental management ; Earth Sciences ; Earth Sciences, general ; Big Data ; Remote Sensing/Photogrammetry ; Environmental Management ; Space Sciences (including Extraterrestrial Physics, Space Exploration and Astronautics)
    Description / Table of Contents: This book is published open access under a CC BY 4.0 license. Over  the  past  decades,  rapid developments in digital and sensing technologies, such  as the Cloud, Web and Internet of Things, have dramatically changed the way we live and work. The digital transformation is revolutionizing our ability to monitor our planet and transforming the  way we access, process and exploit Earth Observation data from satellites. This book reviews these megatrends and their implications for the Earth Observation community as well as the wider data economy. It provides insight into new paradigms of Open Science and Innovation applied to space data, which are characterized by openness, access to large volume of complex data, wide availability of new community tools, new techniques for big data analytics such as Artificial Intelligence, unprecedented level of computing power, and new types of collaboration among researchers, innovators, entrepreneurs and citizen scientists. In addition, this book aims to provide readers with some reflections on the future of Earth Observation, highlighting through a series of use cases not just the new opportunities created by the New Space revolution, but also the new challenges that must be addressed in order to make the most of the large volume of complex and diverse data delivered by the new generation of satellites.  
    Pages: Online-Ressource (VIII, 332 pages) , 116 illustrations, 111 illustrations in color
    ISBN: 9783319656335
    Language: English
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  • 55
    Keywords: Physics ; History ; Nuclear physics ; Heavy ions ; Hadrons ; Particle acceleration ; Physics ; Nuclear Physics, Heavy Ions, Hadrons ; History and Philosophical Foundations of Physics ; Particle Acceleration and Detection, Beam Physics ; History of Science
    Description / Table of Contents: Part I Reminiscences: Rolf Hagedorn and Relativistic Heavy Ion Research.-- Part II The Hagedorn Temperature --- Part III Melting Hadrons, Boiling Quarks Heavy Ion Path to Quark-Gluon Plasma --- Acronyms
    Pages: Online-Ressource (XVI, 441 pages)
    ISBN: 9783319175454
    Language: English
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  • 56
    Keywords: Physics ; Epistemology ; Philosophy and science ; Probabilities ; Physics ; History and Philosophical Foundations of Physics ; Theoretical, Mathematical and Computational Physics ; Epistemology ; Probability Theory and Stochastic Processes ; Philosophy of Science
    Description / Table of Contents: Part I Embedded observers, reflexive perception and representation: Intrinsic and extrinsic observation mode --- Embedded observers and self-expression --- Reflexive measurement --- Intrinsic self-representation --- Part II Provable unknowns: On what is entirely hopeless --- Forecasting and unpredictability --- Induction by rule inference --- Other types of recursion theoretic unknowables --- What if there are no laws? Emergence of laws --- Part III Quantum unknowns: "Shut up and calculate" --- Evolution by permutation --- Quantum mechanics in a nutshell --- Quantum oracles --- Vacuum fluctuations --- Radioactive decay --- Part IV Exotic unknowns: Classical continua and infinities --- Classical (in)determinism --- Deterministic chaos --- Partition logics, finite automata and generalized urn models --- Part V Transcendence: Miracles --- Dualistic interfaces --- Part VI Executive summary: Executive summary --- Appendix A: Formal (in)computability and randomness --- B: Two particle correlations and expectations
    Pages: Online-Ressource (XIV, 219 pages) , 32 illustrations, 24 illustrations in color
    ISBN: 9783319708157
    Language: English
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  • 57
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2010-07-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Paterlini, Marta -- England -- Nature. 2010 May 27;465(7297):514-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20597184" target="_blank"〉PubMed〈/a〉
    Keywords: Denmark ; Education, Graduate/statistics & numerical data ; Emigration and Immigration/statistics & numerical data ; Foreign Professional Personnel/supply & distribution ; Personnel Selection ; Physics ; Research/economics/education/*manpower/standards
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 58
    Publication Date: 2010-06-26
    Description: The canonical role of messenger RNA (mRNA) is to deliver protein-coding information to sites of protein synthesis. However, given that microRNAs bind to RNAs, we hypothesized that RNAs could possess a regulatory role that relies on their ability to compete for microRNA binding, independently of their protein-coding function. As a model for the protein-coding-independent role of RNAs, we describe the functional relationship between the mRNAs produced by the PTEN tumour suppressor gene and its pseudogene PTENP1 and the critical consequences of this interaction. We find that PTENP1 is biologically active as it can regulate cellular levels of PTEN and exert a growth-suppressive role. We also show that the PTENP1 locus is selectively lost in human cancer. We extended our analysis to other cancer-related genes that possess pseudogenes, such as oncogenic KRAS. We also demonstrate that the transcripts of protein-coding genes such as PTEN are biologically active. These findings attribute a novel biological role to expressed pseudogenes, as they can regulate coding gene expression, and reveal a non-coding function for mRNAs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206313/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206313/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Poliseno, Laura -- Salmena, Leonardo -- Zhang, Jiangwen -- Carver, Brett -- Haveman, William J -- Pandolfi, Pier Paolo -- R01 CA-82328-09/CA/NCI NIH HHS/ -- R01 CA102142/CA/NCI NIH HHS/ -- R01 CA102142-07/CA/NCI NIH HHS/ -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2010 Jun 24;465(7301):1033-8. doi: 10.1038/nature09144.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cancer Genetics Program, Beth Israel Deaconess Cancer Center, Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02215, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20577206" target="_blank"〉PubMed〈/a〉
    Keywords: 3' Untranslated Regions/genetics ; Binding, Competitive ; Cell Line ; Gene Expression Regulation, Neoplastic/*genetics ; Genes, Tumor Suppressor ; Humans ; MicroRNAs/*genetics ; Models, Genetic ; Neoplasms/*genetics ; PTEN Phosphohydrolase/*genetics ; Proto-Oncogene Proteins/genetics ; Pseudogenes/*genetics ; RNA, Messenger/*genetics ; ras Proteins/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 59
    Publication Date: 2010-01-19
    Description: Influenza A virus, being responsible for seasonal epidemics and reoccurring pandemics, represents a worldwide threat to public health. High mutation rates facilitate the generation of viral escape mutants, rendering vaccines and drugs directed against virus-encoded targets potentially ineffective. In contrast, targeting host cell determinants temporarily dispensable for the host but crucial for virus replication could prevent viral escape. Here we report the discovery of 287 human host cell genes influencing influenza A virus replication in a genome-wide RNA interference (RNAi) screen. Using an independent assay we confirmed 168 hits (59%) inhibiting either the endemic H1N1 (119 hits) or the current pandemic swine-origin (121 hits) influenza A virus strains, with an overlap of 60%. Notably, a subset of these common hits was also essential for replication of a highly pathogenic avian H5N1 strain. In-depth analyses of several factors provided insights into their infection stage relevance. Notably, SON DNA binding protein (SON) was found to be important for normal trafficking of influenza virions to late endosomes early in infection. We also show that a small molecule inhibitor of CDC-like kinase 1 (CLK1) reduces influenza virus replication by more than two orders of magnitude, an effect connected with impaired splicing of the viral M2 messenger RNA. Furthermore, influenza-virus-infected p27(-/-) (cyclin-dependent kinase inhibitor 1B; Cdkn1b) mice accumulated significantly lower viral titres in the lung, providing in vivo evidence for the importance of this gene. Thus, our results highlight the potency of genome-wide RNAi screening for the dissection of virus-host interactions and the identification of drug targets for a broad range of influenza viruses.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Karlas, Alexander -- Machuy, Nikolaus -- Shin, Yujin -- Pleissner, Klaus-Peter -- Artarini, Anita -- Heuer, Dagmar -- Becker, Daniel -- Khalil, Hany -- Ogilvie, Lesley A -- Hess, Simone -- Maurer, Andre P -- Muller, Elke -- Wolff, Thorsten -- Rudel, Thomas -- Meyer, Thomas F -- England -- Nature. 2010 Feb 11;463(7282):818-22. doi: 10.1038/nature08760. Epub 2010 Jan 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Molecular Biology Department, Max Planck Institute for Infection Biology, Chariteplatz 1, 10117 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20081832" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Factors/genetics/metabolism ; Cell Line ; Cells, Cultured ; Chick Embryo ; Cyclin-Dependent Kinase Inhibitor p27/deficiency/genetics/metabolism ; Epithelial Cells/virology ; Genome, Human/genetics ; *Host-Pathogen Interactions/genetics/physiology ; Humans ; Influenza A Virus, H1N1 Subtype/classification/*growth & development ; Influenza, Human/*genetics/*virology ; Lung/cytology ; Mice ; Mice, Inbred C57BL ; Protein-Serine-Threonine Kinases/genetics ; Protein-Tyrosine Kinases/genetics ; *RNA Interference ; Virus Replication/*physiology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 60
    Publication Date: 2010-02-09
    Description: Ca(2+) channels and calmodulin (CaM) are two prominent signalling hubs that synergistically affect functions as diverse as cardiac excitability, synaptic plasticity and gene transcription. It is therefore fitting that these hubs are in some sense coordinated, as the opening of Ca(V)1-2 Ca(2+) channels are regulated by a single CaM constitutively complexed with channels. The Ca(2+)-free form of CaM (apoCaM) is already pre-associated with the isoleucine-glutamine (IQ) domain on the channel carboxy terminus, and subsequent Ca(2+) binding to this 'resident' CaM drives conformational changes that then trigger regulation of channel opening. Another potential avenue for channel-CaM coordination could arise from the absence of Ca(2+) regulation in channels lacking a pre-associated CaM. Natural fluctuations in CaM concentrations might then influence the fraction of regulable channels and, thereby, the overall strength of Ca(2+) feedback. However, the prevailing view has been that the ultrastrong affinity of channels for apoCaM ensures their saturation with CaM, yielding a significant form of concentration independence between Ca(2+) channels and CaM. Here we show that significant exceptions to this autonomy exist, by combining electrophysiology (to characterize channel regulation) with optical fluorescence resonance energy transfer (FRET) sensor determination of free-apoCaM concentration in live cells. This approach translates quantitative CaM biochemistry from the traditional test-tube context into the realm of functioning holochannels within intact cells. From this perspective, we find that long splice forms of Ca(V)1.3 and Ca(V)1.4 channels include a distal carboxy tail that resembles an enzyme competitive inhibitor that retunes channel affinity for apoCaM such that natural CaM variations affect the strength of Ca(2+) feedback modulation. Given the ubiquity of these channels, the connection between ambient CaM levels and Ca(2+) entry through channels is broadly significant for Ca(2+) homeostasis. Strategies such as ours promise key advances for the in situ analysis of signalling molecules resistant to in vitro reconstitution, such as Ca(2+) channels.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553577/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553577/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Xiaodong -- Yang, Philemon S -- Yang, Wanjun -- Yue, David T -- P30 DC005211/DC/NIDCD NIH HHS/ -- R01 DC000276/DC/NIDCD NIH HHS/ -- England -- Nature. 2010 Feb 18;463(7283):968-72. doi: 10.1038/nature08766. Epub 2010 Feb 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Calcium Signals Laboratory, Department of Biomedical Engineering, The Johns Hopkins University School of Medicine, Ross Building, Room 713, 720 Rutland Avenue, Baltimore, Maryland 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20139964" target="_blank"〉PubMed〈/a〉
    Keywords: Alternative Splicing ; Animals ; Apoproteins/analysis/metabolism ; Binding, Competitive/drug effects ; Calcium/analysis/metabolism/pharmacology ; Calcium Channel Blockers/*chemistry/*metabolism ; Calcium Channels/*chemistry/genetics/*metabolism ; Calmodulin/analysis/*metabolism ; Cell Line ; Cell Survival ; Electrophysiology ; *Feedback, Physiological ; Fluorescence Resonance Energy Transfer ; Humans ; Protein Structure, Tertiary ; Rats ; Recombinant Fusion Proteins/chemistry/genetics/metabolism
    Print ISSN: 0028-0836
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 61
    Publication Date: 2010-04-23
    Description: The worldwide prevalence of chronic hepatitis C virus (HCV) infection is estimated to be approaching 200 million people. Current therapy relies upon a combination of pegylated interferon-alpha and ribavirin, a poorly tolerated regimen typically associated with less than 50% sustained virological response rate in those infected with genotype 1 virus. The development of direct-acting antiviral agents to treat HCV has focused predominantly on inhibitors of the viral enzymes NS3 protease and the RNA-dependent RNA polymerase NS5B. Here we describe the profile of BMS-790052, a small molecule inhibitor of the HCV NS5A protein that exhibits picomolar half-maximum effective concentrations (EC(50)) towards replicons expressing a broad range of HCV genotypes and the JFH-1 genotype 2a infectious virus in cell culture. In a phase I clinical trial in patients chronically infected with HCV, administration of a single 100-mg dose of BMS-790052 was associated with a 3.3 log(10) reduction in mean viral load measured 24 h post-dose that was sustained for an additional 120 h in two patients infected with genotype 1b virus. Genotypic analysis of samples taken at baseline, 24 and 144 h post-dose revealed that the major HCV variants observed had substitutions at amino-acid positions identified using the in vitro replicon system. These results provide the first clinical validation of an inhibitor of HCV NS5A, a protein with no known enzymatic function, as an approach to the suppression of virus replication that offers potential as part of a therapeutic regimen based on combinations of HCV inhibitors.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gao, Min -- Nettles, Richard E -- Belema, Makonen -- Snyder, Lawrence B -- Nguyen, Van N -- Fridell, Robert A -- Serrano-Wu, Michael H -- Langley, David R -- Sun, Jin-Hua -- O'Boyle, Donald R 2nd -- Lemm, Julie A -- Wang, Chunfu -- Knipe, Jay O -- Chien, Caly -- Colonno, Richard J -- Grasela, Dennis M -- Meanwell, Nicholas A -- Hamann, Lawrence G -- England -- Nature. 2010 May 6;465(7294):96-100. doi: 10.1038/nature08960. Epub 2010 Apr 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Virology, Bristol-Myers Squibb Research and Development, 5 Research Parkway, Wallingford, Connecticut 06492, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20410884" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Adult ; Animals ; Antiviral Agents/blood/chemistry/*pharmacology/therapeutic use ; Cell Line ; Cercopithecus aethiops ; Drug Resistance, Viral ; Female ; Genotype ; HeLa Cells ; Hepacivirus/*drug effects ; Hepatitis C/drug therapy/virology ; Humans ; Imidazoles/blood/chemistry/*pharmacology ; Inhibitory Concentration 50 ; Male ; Middle Aged ; Time Factors ; Vero Cells ; Viral Load/drug effects ; Viral Nonstructural Proteins/*antagonists & inhibitors ; Young Adult
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 62
    Publication Date: 2010-02-25
    Description: Tumours with mutant BRAF are dependent on the RAF-MEK-ERK signalling pathway for their growth. We found that ATP-competitive RAF inhibitors inhibit ERK signalling in cells with mutant BRAF, but unexpectedly enhance signalling in cells with wild-type BRAF. Here we demonstrate the mechanistic basis for these findings. We used chemical genetic methods to show that drug-mediated transactivation of RAF dimers is responsible for paradoxical activation of the enzyme by inhibitors. Induction of ERK signalling requires direct binding of the drug to the ATP-binding site of one kinase of the dimer and is dependent on RAS activity. Drug binding to one member of RAF homodimers (CRAF-CRAF) or heterodimers (CRAF-BRAF) inhibits one protomer, but results in transactivation of the drug-free protomer. In BRAF(V600E) tumours, RAS is not activated, thus transactivation is minimal and ERK signalling is inhibited in cells exposed to RAF inhibitors. These results indicate that RAF inhibitors will be effective in tumours in which BRAF is mutated. Furthermore, because RAF inhibitors do not inhibit ERK signalling in other cells, the model predicts that they would have a higher therapeutic index and greater antitumour activity than mitogen-activated protein kinase (MEK) inhibitors, but could also cause toxicity due to MEK/ERK activation. These predictions have been borne out in a recent clinical trial of the RAF inhibitor PLX4032 (refs 4, 5). The model indicates that promotion of RAF dimerization by elevation of wild-type RAF expression or RAS activity could lead to drug resistance in mutant BRAF tumours. In agreement with this prediction, RAF inhibitors do not inhibit ERK signalling in cells that coexpress BRAF(V600E) and mutant RAS.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178447/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178447/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Poulikakos, Poulikos I -- Zhang, Chao -- Bollag, Gideon -- Shokat, Kevan M -- Rosen, Neal -- 1P01CA129243-02/CA/NCI NIH HHS/ -- 2R01EB001987/EB/NIBIB NIH HHS/ -- P01 CA129243-010002/CA/NCI NIH HHS/ -- R01 EB001987/EB/NIBIB NIH HHS/ -- U01 CA091178/CA/NCI NIH HHS/ -- U01 CA091178-01/CA/NCI NIH HHS/ -- England -- Nature. 2010 Mar 18;464(7287):427-30. doi: 10.1038/nature08902.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Program in Molecular Pharmacology and Chemistry and Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20179705" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Animals ; Catalytic Domain ; Cell Line ; Cell Line, Tumor ; Enzyme Activation/drug effects ; Extracellular Signal-Regulated MAP Kinases/*metabolism ; Humans ; Indoles/pharmacology ; MAP Kinase Signaling System/*drug effects ; Mice ; Mitogen-Activated Protein Kinase Kinases/metabolism ; Models, Biological ; Neoplasms/drug therapy/enzymology/genetics/metabolism ; Phosphorylation ; Protein Binding ; Protein Kinase Inhibitors/metabolism/*pharmacology/therapeutic use ; Protein Multimerization ; Proto-Oncogene Proteins B-raf/antagonists & ; inhibitors/chemistry/genetics/*metabolism ; Sulfonamides/pharmacology ; Transcriptional Activation/*drug effects ; raf Kinases/*antagonists & inhibitors/chemistry/genetics/*metabolism ; ras Proteins/genetics/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 63
    Publication Date: 2010-07-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Johnston, Josephine -- England -- Nature. 2010 Jul 8;466(7303):179. doi: 10.1038/466179a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20613819" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Consent Forms/legislation & jurisprudence ; Embryo Research/ethics/*legislation & jurisprudence ; *Embryonic Stem Cells/cytology ; Guidelines as Topic/*standards ; Humans ; Tissue and Organ Procurement/legislation & jurisprudence
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 64
    Publication Date: 2010-01-29
    Description: Cellular differentiation and lineage commitment are considered to be robust and irreversible processes during development. Recent work has shown that mouse and human fibroblasts can be reprogrammed to a pluripotent state with a combination of four transcription factors. This raised the question of whether transcription factors could directly induce other defined somatic cell fates, and not only an undifferentiated state. We hypothesized that combinatorial expression of neural-lineage-specific transcription factors could directly convert fibroblasts into neurons. Starting from a pool of nineteen candidate genes, we identified a combination of only three factors, Ascl1, Brn2 (also called Pou3f2) and Myt1l, that suffice to rapidly and efficiently convert mouse embryonic and postnatal fibroblasts into functional neurons in vitro. These induced neuronal (iN) cells express multiple neuron-specific proteins, generate action potentials and form functional synapses. Generation of iN cells from non-neural lineages could have important implications for studies of neural development, neurological disease modelling and regenerative medicine.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829121/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829121/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vierbuchen, Thomas -- Ostermeier, Austin -- Pang, Zhiping P -- Kokubu, Yuko -- Sudhof, Thomas C -- Wernig, Marius -- 1018438-142-PABCA/PHS HHS/ -- 5T32NS007280/NS/NINDS NIH HHS/ -- T32 CA009302/CA/NCI NIH HHS/ -- U01 HL100397/HL/NHLBI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Feb 25;463(7284):1035-41. doi: 10.1038/nature08797. Epub 2010 Jan 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Stem Cell Biology and Regenerative Medicine, Department of Pathology, Stanford University School of Medicine, 1050 Arastradero Road, Palo Alto, California 94304, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20107439" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Basic Helix-Loop-Helix Transcription Factors/genetics/metabolism ; Biomarkers/analysis ; Cell Line ; *Cell Lineage ; *Cell Transdifferentiation ; Cells, Cultured ; Embryo, Mammalian/cytology ; Fibroblasts/*cytology ; Mice ; Nerve Tissue Proteins/genetics/metabolism ; Neurons/*cytology/metabolism/*physiology ; POU Domain Factors/genetics/metabolism ; Regenerative Medicine ; Synapses/metabolism ; Tail/cytology ; Time Factors ; Transcription Factors/genetics/metabolism
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  • 65
    Publication Date: 2010-12-24
    Description: Impulsivity, describing action without foresight, is an important feature of several psychiatric diseases, suicidality and violent behaviour. The complex origins of impulsivity hinder identification of the genes influencing it and the diseases with which it is associated. Here we perform exon-focused sequencing of impulsive individuals in a founder population, targeting fourteen genes belonging to the serotonin and dopamine domain. A stop codon in HTR2B was identified that is common (minor allele frequency 〉 1%) but exclusive to Finnish people. Expression of the gene in the human brain was assessed, as well as the molecular functionality of the stop codon, which was associated with psychiatric diseases marked by impulsivity in both population and family-based analyses. Knockout of Htr2b increased impulsive behaviours in mice, indicative of predictive validity. Our study shows the potential for identifying and tracing effects of rare alleles in complex behavioural phenotypes using founder populations, and indicates a role for HTR2B in impulsivity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183507/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183507/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bevilacqua, Laura -- Doly, Stephane -- Kaprio, Jaakko -- Yuan, Qiaoping -- Tikkanen, Roope -- Paunio, Tiina -- Zhou, Zhifeng -- Wedenoja, Juho -- Maroteaux, Luc -- Diaz, Silvina -- Belmer, Arnaud -- Hodgkinson, Colin A -- Dell'osso, Liliana -- Suvisaari, Jaana -- Coccaro, Emil -- Rose, Richard J -- Peltonen, Leena -- Virkkunen, Matti -- Goldman, David -- AA-09203/AA/NIAAA NIH HHS/ -- AA-12502/AA/NIAAA NIH HHS/ -- Z01 AA000301-09/Intramural NIH HHS/ -- Z01 AA000301-10/Intramural NIH HHS/ -- Z99 AA999999/Intramural NIH HHS/ -- England -- Nature. 2010 Dec 23;468(7327):1061-6. doi: 10.1038/nature09629.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Neurogenetics, National Institute on Alcohol Abuse and Alcoholism, NIH, Rockville, Maryland 20852, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21179162" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/metabolism ; Case-Control Studies ; Cell Line ; Female ; Finland ; Founder Effect ; Gene Expression Regulation ; Gene Knockout Techniques ; Genotype ; Humans ; Impulsive Behavior/*genetics ; Male ; Mental Disorders/genetics ; Mice ; Mice, 129 Strain ; Mice, Knockout ; Pedigree ; Polymorphism, Single Nucleotide/genetics ; Receptor, Serotonin, 5-HT2B/*genetics/*metabolism ; Testosterone/blood/cerebrospinal fluid
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  • 66
    Publication Date: 2010-09-03
    Description: The contribution of REST to embryonic stem (ES) cell pluripotency has been uncertain. Two years ago, Singh et al. claimed that Rest(+/-) and REST knock-down ES cells expressed reduced levels of pluripotency markers, in contrast to a prior and subsequent reports. To understand the basis of this difference, we analysed the YHC334 (YHC) and RRC160 (RRC) gene-trap ES cell lines used by Singh et al., obtained directly from BayGenomics. Both REST mutant lines generated REST-betaGeo fusion proteins, but expressed pluripotency genes at levels similar to appropriately matched parental wild ES cells, consistent with expression being REST-independent.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jorgensen, Helle F -- Fisher, Amanda G -- MC_U120027516/Medical Research Council/United Kingdom -- England -- Nature. 2010 Sep 2;467(7311):E3-4; discussion E5. doi: 10.1038/nature09305.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Lymphocyte Development Group, MRC Clinical Sciences Centre, Imperial College School of Medicine, Hammersmith Hospital Campus, Du Cane Road, London W12 0NN, UK. amanda.fisher@csc.mrc.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20811409" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; Embryonic Stem Cells/*cytology ; Mice ; Mutagenesis, Insertional ; Pluripotent Stem Cells/*cytology ; Recombinant Fusion Proteins/genetics ; Repressor Proteins/*genetics
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  • 67
    Publication Date: 2009-12-23
    Description: Reprogramming of somatic cell nuclei to yield induced pluripotent stem (iPS) cells makes possible derivation of patient-specific stem cells for regenerative medicine. However, iPS cell generation is asynchronous and slow (2-3 weeks), the frequency is low (〈0.1%), and DNA demethylation constitutes a bottleneck. To determine regulatory mechanisms involved in reprogramming, we generated interspecies heterokaryons (fused mouse embryonic stem (ES) cells and human fibroblasts) that induce reprogramming synchronously, frequently and fast. Here we show that reprogramming towards pluripotency in single heterokaryons is initiated without cell division or DNA replication, rapidly (1 day) and efficiently (70%). Short interfering RNA (siRNA)-mediated knockdown showed that activation-induced cytidine deaminase (AID, also known as AICDA) is required for promoter demethylation and induction of OCT4 (also known as POU5F1) and NANOG gene expression. AID protein bound silent methylated OCT4 and NANOG promoters in fibroblasts, but not active demethylated promoters in ES cells. These data provide new evidence that mammalian AID is required for active DNA demethylation and initiation of nuclear reprogramming towards pluripotency in human somatic cells.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2906123/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2906123/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bhutani, Nidhi -- Brady, Jennifer J -- Damian, Mara -- Sacco, Alessandra -- Corbel, Stephane Y -- Blau, Helen M -- AG009521/AG/NIA NIH HHS/ -- AG024987/AG/NIA NIH HHS/ -- AI007328/AI/NIAID NIH HHS/ -- R01 AG009521/AG/NIA NIH HHS/ -- R01 AG009521-25/AG/NIA NIH HHS/ -- R01 AG024987/AG/NIA NIH HHS/ -- R01 AG024987-05/AG/NIA NIH HHS/ -- T32 AI007328/AI/NIAID NIH HHS/ -- U01 HL100397/HL/NHLBI NIH HHS/ -- England -- Nature. 2010 Feb 25;463(7284):1042-7. doi: 10.1038/nature08752.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Baxter Laboratory for Stem Cell Biology, Institute for Stem Cell Biology and Regenerative Medicine, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305-5175, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20027182" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Division ; Cell Fusion ; Cell Line ; Cells, Cultured ; Cellular Reprogramming/genetics/*physiology ; Chromatin Immunoprecipitation ; Cytidine Deaminase/deficiency/genetics/*metabolism ; DNA/chemistry/genetics/metabolism ; *DNA Methylation ; DNA Replication ; Embryonic Stem Cells/cytology/metabolism ; Fibroblasts/cytology/metabolism ; Gene Expression Regulation ; Gene Knockdown Techniques ; Homeodomain Proteins/genetics ; Humans ; Induced Pluripotent Stem Cells/*cytology/enzymology/*metabolism ; Lung/cytology/embryology ; Mice ; Models, Biological ; Octamer Transcription Factor-3/genetics ; Promoter Regions, Genetic/genetics ; Time Factors
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  • 68
    Publication Date: 2010-10-12
    Description: Reciprocity of inflammation, oxidative stress and neovascularization is emerging as an important mechanism underlying numerous processes from tissue healing and remodelling to cancer progression. Whereas the mechanism of hypoxia-driven angiogenesis is well understood, the link between inflammation-induced oxidation and de novo blood vessel growth remains obscure. Here we show that the end products of lipid oxidation, omega-(2-carboxyethyl)pyrrole (CEP) and other related pyrroles, are generated during inflammation and wound healing and accumulate at high levels in ageing tissues in mice and in highly vascularized tumours in both murine and human melanoma. The molecular patterns of carboxyalkylpyrroles are recognized by Toll-like receptor 2 (TLR2), but not TLR4 or scavenger receptors on endothelial cells, leading to an angiogenic response that is independent of vascular endothelial growth factor. CEP promoted angiogenesis in hindlimb ischaemia and wound healing models through MyD88-dependent TLR2 signalling. Neutralization of endogenous carboxyalkylpyrroles impaired wound healing and tissue revascularization and diminished tumour angiogenesis. Both TLR2 and MyD88 are required for CEP-induced stimulation of Rac1 and endothelial migration. Taken together, these findings establish a new function of TLR2 as a sensor of oxidation-associated molecular patterns, providing a key link connecting inflammation, oxidative stress, innate immunity and angiogenesis.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990914/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990914/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉West, Xiaoxia Z -- Malinin, Nikolay L -- Merkulova, Alona A -- Tischenko, Mira -- Kerr, Bethany A -- Borden, Ernest C -- Podrez, Eugene A -- Salomon, Robert G -- Byzova, Tatiana V -- CA126847/CA/NCI NIH HHS/ -- GM021249/GM/NIGMS NIH HHS/ -- HL071625/HL/NHLBI NIH HHS/ -- HL073311/HL/NHLBI NIH HHS/ -- HL077213/HL/NHLBI NIH HHS/ -- R01 HL071625/HL/NHLBI NIH HHS/ -- R01 HL071625-07/HL/NHLBI NIH HHS/ -- R01 HL071625-08/HL/NHLBI NIH HHS/ -- R01 HL077213/HL/NHLBI NIH HHS/ -- England -- Nature. 2010 Oct 21;467(7318):972-6. doi: 10.1038/nature09421. Epub 2010 Oct 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Cardiology, J. J. Jacobs Center for Thrombosis and Vascular Biology, NB50, The Cleveland Clinic Foundation, 9500 Euclid Avenue, Cleveland, Ohio 44195, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20927103" target="_blank"〉PubMed〈/a〉
    Keywords: Aging/metabolism ; Animals ; Antigens, CD31/metabolism ; Aorta/cytology/drug effects ; Cell Line ; Cell Movement ; Endothelial Cells/metabolism ; Hindlimb/metabolism ; Humans ; Immunity, Innate/immunology ; Inflammation/metabolism ; Ischemia/metabolism ; Ligands ; Melanoma/blood supply/metabolism ; Mice ; Mice, Inbred C57BL ; Myeloid Differentiation Factor 88/metabolism ; Neovascularization, Pathologic/*metabolism ; *Neovascularization, Physiologic/drug effects ; Oxidation-Reduction ; Oxidative Stress/*physiology ; Propionates ; Pyrroles/chemistry/*metabolism/pharmacology ; Receptors, Scavenger/metabolism ; Signal Transduction/drug effects ; Toll-Like Receptor 2/agonists/*metabolism ; Toll-Like Receptor 4/metabolism ; Vascular Endothelial Growth Factor A/metabolism ; Wound Healing/drug effects/physiology ; rac1 GTP-Binding Protein/metabolism
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  • 69
    Publication Date: 2010-04-16
    Description: Primary cilia are evolutionarily conserved cellular organelles that organize diverse signalling pathways. Defects in the formation or function of primary cilia are associated with a spectrum of human diseases and developmental abnormalities. Genetic screens in model organisms have discovered core machineries of cilium assembly and maintenance. However, regulatory molecules that coordinate the biogenesis of primary cilia with other cellular processes, including cytoskeletal organization, vesicle trafficking and cell-cell adhesion, remain to be identified. Here we report the results of a functional genomic screen using RNA interference (RNAi) to identify human genes involved in ciliogenesis control. The screen identified 36 positive and 13 negative ciliogenesis modulators, which include molecules involved in actin dynamics and vesicle trafficking. Further investigation demonstrated that blocking actin assembly facilitates ciliogenesis by stabilizing the pericentrosomal preciliary compartment (PPC), a previously uncharacterized compact vesiculotubular structure storing transmembrane proteins destined for cilia during the early phase of ciliogenesis. The PPC was labelled by recycling endosome markers. Moreover, knockdown of modulators that are involved in the endocytic recycling pathway affected the formation of the PPC as well as ciliogenesis. Our results uncover a critical regulatory step that couples actin dynamics and endocytic recycling with ciliogenesis, and also provides potential target molecules for future study.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929961/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929961/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kim, Joon -- Lee, Ji Eun -- Heynen-Genel, Susanne -- Suyama, Eigo -- Ono, Keiichiro -- Lee, Kiyoung -- Ideker, Trey -- Aza-Blanc, Pedro -- Gleeson, Joseph G -- GM070743/GM/NIGMS NIH HHS/ -- P30 CA023100/CA/NCI NIH HHS/ -- P30 CA23100/CA/NCI NIH HHS/ -- P30 NS047101/NS/NINDS NIH HHS/ -- P30 NS057096/NS/NINDS NIH HHS/ -- R01 GM070743/GM/NIGMS NIH HHS/ -- R01 NS052455/NS/NINDS NIH HHS/ -- R01 NS052455-05/NS/NINDS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Apr 15;464(7291):1048-51. doi: 10.1038/nature08895.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurosciences, Institute for Genomic Medicine, Howard Hughes Medical Institute, University of California San Diego, La Jolla, California 92093, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20393563" target="_blank"〉PubMed〈/a〉
    Keywords: Actins/metabolism ; Cell Line ; Cilia/drug effects/*genetics/pathology/*physiology ; Cytochalasin D/pharmacology ; Endocytosis ; Humans ; RNA Interference ; Tumor Suppressor Proteins/genetics/metabolism
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  • 70
    Publication Date: 2010-08-20
    Description: Epigenetic modifications must underlie lineage-specific differentiation as terminally differentiated cells express tissue-specific genes, but their DNA sequence is unchanged. Haematopoiesis provides a well-defined model to study epigenetic modifications during cell-fate decisions, as multipotent progenitors (MPPs) differentiate into progressively restricted myeloid or lymphoid progenitors. Although DNA methylation is critical for myeloid versus lymphoid differentiation, as demonstrated by the myeloerythroid bias in Dnmt1 hypomorphs, a comprehensive DNA methylation map of haematopoietic progenitors, or of any multipotent/oligopotent lineage, does not exist. Here we examined 4.6 million CpG sites throughout the genome for MPPs, common lymphoid progenitors (CLPs), common myeloid progenitors (CMPs), granulocyte/macrophage progenitors (GMPs), and thymocyte progenitors (DN1, DN2, DN3). Marked epigenetic plasticity accompanied both lymphoid and myeloid restriction. Myeloid commitment involved less global DNA methylation than lymphoid commitment, supported functionally by myeloid skewing of progenitors following treatment with a DNA methyltransferase inhibitor. Differential DNA methylation correlated with gene expression more strongly at CpG island shores than CpG islands. Many examples of genes and pathways not previously known to be involved in choice between lymphoid/myeloid differentiation have been identified, such as Arl4c and Jdp2. Several transcription factors, including Meis1, were methylated and silenced during differentiation, indicating a role in maintaining an undifferentiated state. Additionally, epigenetic modification of modifiers of the epigenome seems to be important in haematopoietic differentiation. Our results directly demonstrate that modulation of DNA methylation occurs during lineage-specific differentiation and defines a comprehensive map of the methylation and transcriptional changes that accompany myeloid versus lymphoid fate decisions.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956609/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956609/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ji, Hong -- Ehrlich, Lauren I R -- Seita, Jun -- Murakami, Peter -- Doi, Akiko -- Lindau, Paul -- Lee, Hwajin -- Aryee, Martin J -- Irizarry, Rafael A -- Kim, Kitai -- Rossi, Derrick J -- Inlay, Matthew A -- Serwold, Thomas -- Karsunky, Holger -- Ho, Lena -- Daley, George Q -- Weissman, Irving L -- Feinberg, Andrew P -- CA09151/CA/NCI NIH HHS/ -- F32 AI058521/AI/NIAID NIH HHS/ -- F32 AI058521-02/AI/NIAID NIH HHS/ -- F32AI058521/AI/NIAID NIH HHS/ -- P50 HG003233/HG/NHGRI NIH HHS/ -- P50 HG003233-07/HG/NHGRI NIH HHS/ -- P50 HG003233-08/HG/NHGRI NIH HHS/ -- P50HG003233/HG/NHGRI NIH HHS/ -- R00 AG029760/AG/NIA NIH HHS/ -- R00 AG029760-04/AG/NIA NIH HHS/ -- R00AGO29760/PHS HHS/ -- R01 AI047457/AI/NIAID NIH HHS/ -- R01 AI047457-04/AI/NIAID NIH HHS/ -- R01 AI047457-05/AI/NIAID NIH HHS/ -- R01 AI047458/AI/NIAID NIH HHS/ -- R01 CA086065/CA/NCI NIH HHS/ -- R01 GM083084/GM/NIGMS NIH HHS/ -- R01 GM083084-04/GM/NIGMS NIH HHS/ -- R01AI047457/AI/NIAID NIH HHS/ -- R01AI047458/AI/NIAID NIH HHS/ -- R37 CA054358/CA/NCI NIH HHS/ -- R37 CA054358-18/CA/NCI NIH HHS/ -- R37 CA054358-19/CA/NCI NIH HHS/ -- R37CA053458/CA/NCI NIH HHS/ -- England -- Nature. 2010 Sep 16;467(7313):338-42. doi: 10.1038/nature09367. Epub 2010 Aug 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Epigenetics and Department of Medicine, Johns Hopkins University School of Medicine, 570 Rangos, 725 N. Wolfe St., Baltimore, Maryland 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20720541" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; *Cell Lineage/genetics ; CpG Islands/genetics ; *DNA Methylation/genetics ; Epigenesis, Genetic ; Gene Expression Profiling ; Genome/genetics ; *Hematopoiesis/genetics ; Hematopoietic Stem Cells/*cytology/*metabolism ; Lymphocytes/cytology/metabolism ; Metabolome ; Metabolomics ; Mice ; Myeloid Cells/cytology/metabolism ; Pluripotent Stem Cells/cytology/metabolism
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  • 71
    Publication Date: 2010-10-19
    Description: The derivation of human ES cells (hESCs) from human blastocysts represents one of the milestones in stem cell biology. The full potential of hESCs in research and clinical applications requires a detailed understanding of the genetic network that governs the unique properties of hESCs. Here, we report a genome-wide RNA interference screen to identify genes which regulate self-renewal and pluripotency properties in hESCs. Interestingly, functionally distinct complexes involved in transcriptional regulation and chromatin remodelling are among the factors identified in the screen. To understand the roles of these potential regulators of hESCs, we studied transcription factor PRDM14 to gain new insights into its functional roles in the regulation of pluripotency. We showed that PRDM14 regulates directly the expression of key pluripotency gene POU5F1 through its proximal enhancer. Genome-wide location profiling experiments revealed that PRDM14 colocalized extensively with other key transcription factors such as OCT4, NANOG and SOX2, indicating that PRDM14 is integrated into the core transcriptional regulatory network. More importantly, in a gain-of-function assay, we showed that PRDM14 is able to enhance the efficiency of reprogramming of human fibroblasts in conjunction with OCT4, SOX2 and KLF4. Altogether, our study uncovers a wealth of novel hESC regulators wherein PRDM14 exemplifies a key transcription factor required for the maintenance of hESC identity and the reacquisition of pluripotency in human somatic cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chia, Na-Yu -- Chan, Yun-Shen -- Feng, Bo -- Lu, Xinyi -- Orlov, Yuriy L -- Moreau, Dimitri -- Kumar, Pankaj -- Yang, Lin -- Jiang, Jianming -- Lau, Mei-Sheng -- Huss, Mikael -- Soh, Boon-Seng -- Kraus, Petra -- Li, Pin -- Lufkin, Thomas -- Lim, Bing -- Clarke, Neil D -- Bard, Frederic -- Ng, Huck-Hui -- England -- Nature. 2010 Nov 11;468(7321):316-20. doi: 10.1038/nature09531. Epub 2010 Oct 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Gene Regulation Laboratory, Genome Institute of Singapore, 60 Biopolis Street, Singapore 138672.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20953172" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Base Sequence ; Cell Line ; Cellular Reprogramming/genetics ; DNA-Binding Proteins/genetics/metabolism ; Embryonic Stem Cells/*cytology/*metabolism ; Enhancer Elements, Genetic/genetics ; Fibroblasts/cytology/metabolism ; Gene Expression Regulation/genetics ; Genome, Human/*genetics ; Humans ; Induced Pluripotent Stem Cells/cytology/metabolism ; Mice ; Octamer Transcription Factor-3/genetics/metabolism ; *RNA Interference ; Repressor Proteins/genetics/*metabolism ; SOXB1 Transcription Factors/metabolism
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  • 72
    Publication Date: 2010-04-02
    Description: Adiponectin is an anti-diabetic adipokine. Its receptors possess a seven-transmembrane topology with the amino terminus located intracellularly, which is the opposite of G-protein-coupled receptors. Here we provide evidence that adiponectin induces extracellular Ca(2+) influx by adiponectin receptor 1 (AdipoR1), which was necessary for subsequent activation of Ca(2+)/calmodulin-dependent protein kinase kinase beta (CaMKKbeta), AMPK and SIRT1, increased expression and decreased acetylation of peroxisome proliferator-activated receptor gamma coactivator-1alpha (PGC-1alpha), and increased mitochondria in myocytes. Moreover, muscle-specific disruption of AdipoR1 suppressed the adiponectin-mediated increase in intracellular Ca(2+) concentration, and decreased the activation of CaMKK, AMPK and SIRT1 by adiponectin. Suppression of AdipoR1 also resulted in decreased PGC-1alpha expression and deacetylation, decreased mitochondrial content and enzymes, decreased oxidative type I myofibres, and decreased oxidative stress-detoxifying enzymes in skeletal muscle, which were associated with insulin resistance and decreased exercise endurance. Decreased levels of adiponectin and AdipoR1 in obesity may have causal roles in mitochondrial dysfunction and insulin resistance seen in diabetes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Iwabu, Masato -- Yamauchi, Toshimasa -- Okada-Iwabu, Miki -- Sato, Koji -- Nakagawa, Tatsuro -- Funata, Masaaki -- Yamaguchi, Mamiko -- Namiki, Shigeyuki -- Nakayama, Ryo -- Tabata, Mitsuhisa -- Ogata, Hitomi -- Kubota, Naoto -- Takamoto, Iseki -- Hayashi, Yukiko K -- Yamauchi, Naoko -- Waki, Hironori -- Fukayama, Masashi -- Nishino, Ichizo -- Tokuyama, Kumpei -- Ueki, Kohjiro -- Oike, Yuichi -- Ishii, Satoshi -- Hirose, Kenzo -- Shimizu, Takao -- Touhara, Kazushige -- Kadowaki, Takashi -- England -- Nature. 2010 Apr 29;464(7293):1313-9. doi: 10.1038/nature08991. Epub 2010 Mar 31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Diabetes and Metabolic Diseases, Graduate School of Medicine, University of Tokyo, Tokyo 113-0033, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20357764" target="_blank"〉PubMed〈/a〉
    Keywords: AMP-Activated Protein Kinases/*metabolism ; Adiponectin/*metabolism ; Animals ; Calcium/*metabolism ; Calcium Signaling ; Calcium-Calmodulin-Dependent Protein Kinase Kinase/metabolism ; Cell Line ; Glucose/metabolism ; Homeostasis ; Insulin/metabolism ; Insulin Resistance ; Mice ; Mitochondria/*metabolism ; Muscle Cells/cytology/metabolism ; Muscle, Skeletal/cytology/metabolism ; Oocytes/metabolism ; Oxidative Stress ; Physical Conditioning, Animal ; Receptors, Adiponectin/deficiency/*metabolism ; Sirtuin 1/*metabolism ; Trans-Activators/*metabolism ; Transcription Factors ; Xenopus laevis
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  • 73
    Publication Date: 2010-07-14
    Description: While reversible histone modifications are linked to an ever-expanding range of biological functions, the demethylases for histone H4 lysine 20 and their potential regulatory roles remain unknown. Here we report that the PHD and Jumonji C (JmjC) domain-containing protein, PHF8, while using multiple substrates, including H3K9me1/2 and H3K27me2, also functions as an H4K20me1 demethylase. PHF8 is recruited to promoters by its PHD domain based on interaction with H3K4me2/3 and controls G1-S transition in conjunction with E2F1, HCF-1 (also known as HCFC1) and SET1A (also known as SETD1A), at least in part, by removing the repressive H4K20me1 mark from a subset of E2F1-regulated gene promoters. Phosphorylation-dependent PHF8 dismissal from chromatin in prophase is apparently required for the accumulation of H4K20me1 during early mitosis, which might represent a component of the condensin II loading process. Accordingly, the HEAT repeat clusters in two non-structural maintenance of chromosomes (SMC) condensin II subunits, N-CAPD3 and N-CAPG2 (also known as NCAPD3 and NCAPG2, respectively), are capable of recognizing H4K20me1, and ChIP-Seq analysis demonstrates a significant overlap of condensin II and H4K20me1 sites in mitotic HeLa cells. Thus, the identification and characterization of an H4K20me1 demethylase, PHF8, has revealed an intimate link between this enzyme and two distinct events in cell cycle progression.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059551/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059551/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Wen -- Tanasa, Bogdan -- Tyurina, Oksana V -- Zhou, Tian Yuan -- Gassmann, Reto -- Liu, Wei Ting -- Ohgi, Kenneth A -- Benner, Chris -- Garcia-Bassets, Ivan -- Aggarwal, Aneel K -- Desai, Arshad -- Dorrestein, Pieter C -- Glass, Christopher K -- Rosenfeld, Michael G -- R01 CA097134/CA/NCI NIH HHS/ -- R01 CA097134-09/CA/NCI NIH HHS/ -- R01 DK018477/DK/NIDDK NIH HHS/ -- R01 DK018477-35/DK/NIDDK NIH HHS/ -- R01 DK039949/DK/NIDDK NIH HHS/ -- R01 DK039949-18/DK/NIDDK NIH HHS/ -- R01 HL065445/HL/NHLBI NIH HHS/ -- R01 NS034934/NS/NINDS NIH HHS/ -- R01 NS034934-21/NS/NINDS NIH HHS/ -- R37 DK039949/DK/NIDDK NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Jul 22;466(7305):508-12. doi: 10.1038/nature09272. Epub 2010 Jul 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, School of Medicine, University of California at San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20622854" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/chemistry/metabolism ; Cell Cycle/*physiology ; Cell Line ; Chromatin/metabolism ; Chromosomal Proteins, Non-Histone/chemistry/deficiency/genetics/*metabolism ; DNA-Binding Proteins/chemistry/metabolism ; HeLa Cells ; Histone Demethylases/chemistry/genetics/*metabolism ; Histone-Lysine N-Methyltransferase/metabolism ; Histones/chemistry/*metabolism ; Host Cell Factor C1/genetics/metabolism ; Humans ; Lysine/*metabolism ; Methylation ; Multiprotein Complexes/chemistry/metabolism ; Phosphorylation ; Promoter Regions, Genetic ; Protein Structure, Tertiary ; Transcription Factors/chemistry/deficiency/genetics/*metabolism
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  • 74
    Publication Date: 2010-04-30
    Description: The interferon-inducible dynamin-like myxovirus resistance protein 1 (MxA; also called MX1) GTPase is a key mediator of cell-autonomous innate immunity against pathogens such as influenza viruses. MxA partially localizes to COPI-positive membranes of the smooth endoplasmic reticulum-Golgi intermediate compartment. At the point of infection, it redistributes to sites of viral replication and promotes missorting of essential viral constituents. It has been proposed that the middle domain and the GTPase effector domain of dynamin-like GTPases constitute a stalk that mediates oligomerization and transmits conformational changes from the G domain to the target structure; however, the molecular architecture of this stalk has remained elusive. Here we report the crystal structure of the stalk of human MxA, which folds into a four-helical bundle. This structure tightly oligomerizes in the crystal in a criss-cross pattern involving three distinct interfaces and one loop. Mutations in each of these interaction sites interfere with native assembly, oligomerization, membrane binding and antiviral activity of MxA. On the basis of these results, we propose a structural model for dynamin oligomerization and stimulated GTP hydrolysis that is consistent with previous structural predictions and has functional implications for all members of the dynamin family.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gao, Song -- von der Malsburg, Alexander -- Paeschke, Susann -- Behlke, Joachim -- Haller, Otto -- Kochs, Georg -- Daumke, Oliver -- England -- Nature. 2010 May 27;465(7297):502-6. doi: 10.1038/nature08972. Epub 2010 Apr 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max-Delbruck-Centrum for Molecular Medicine, Crystallography, Robert-Rossle-Strasse 10, 13125 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20428112" target="_blank"〉PubMed〈/a〉
    Keywords: Antiviral Agents/chemistry/metabolism/pharmacology ; Binding Sites ; Cell Line ; Crystallography, X-Ray ; Dynamins/*chemistry/metabolism ; GTP Phosphohydrolases/metabolism ; GTP-Binding Proteins/*chemistry/genetics/*metabolism/pharmacology ; Guanosine Triphosphate/metabolism ; Humans ; Hydrolysis ; Hydrophobic and Hydrophilic Interactions ; Influenza A Virus, H5N1 Subtype/drug effects/physiology ; Models, Molecular ; Myxovirus Resistance Proteins ; Protein Conformation ; *Protein Multimerization ; Virus Replication/drug effects
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  • 75
    Publication Date: 2010-07-30
    Description: The post-translational methylation of alpha-amino groups was first discovered over 30 years ago on the bacterial ribosomal proteins L16 and L33 (refs 1, 2), but almost nothing is known about the function or enzymology of this modification. Several other bacterial and eukaryotic proteins have since been shown to be alpha-N-methylated. However, the Ran guanine nucleotide-exchange factor, RCC1, is the only protein for which any biological function of alpha-N-methylation has been identified. Methylation-defective mutants of RCC1 have reduced affinity for DNA and cause mitotic defects, but further characterization of this modification has been hindered by ignorance of the responsible methyltransferase. All fungal and animal N-terminally methylated proteins contain a unique N-terminal motif, Met-(Ala/Pro/Ser)-Pro-Lys, indicating that they may be targets of the same, unknown enzyme. The initiating Met is cleaved, and the exposed alpha-amino group is mono-, di- or trimethylated. Here we report the discovery of the first alpha-N-methyltransferase, which we named N-terminal RCC1 methyltransferase (NRMT). Substrate docking and mutational analysis of RCC1 defined the NRMT recognition sequence and enabled the identification of numerous new methylation targets, including SET (also known as TAF-I or PHAPII) and the retinoblastoma protein, RB. Knockdown of NRMT recapitulates the multi-spindle phenotype seen with methylation-defective RCC1 mutants, demonstrating the importance of alpha-N-methylation for normal bipolar spindle formation and chromosome segregation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2939154/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2939154/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tooley, Christine E Schaner -- Petkowski, Janusz J -- Muratore-Schroeder, Tara L -- Balsbaugh, Jeremy L -- Shabanowitz, Jeffrey -- Sabat, Michal -- Minor, Wladek -- Hunt, Donald F -- Macara, Ian G -- R01 GM050526/GM/NIGMS NIH HHS/ -- R01 GM050526-17/GM/NIGMS NIH HHS/ -- England -- Nature. 2010 Aug 26;466(7310):1125-8. doi: 10.1038/nature09343.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, Center for Cell Signaling, University of Virginia School of Medicine, Charlottesville, Virginia 22908, USA. ces5g@virginia.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20668449" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Cycle Proteins/*metabolism ; Cell Line ; Chromosome Segregation ; Gene Knockdown Techniques ; Guanine Nucleotide Exchange Factors/*metabolism ; HeLa Cells ; Histone Chaperones/metabolism ; Humans ; Methyltransferases/chemistry/genetics/*metabolism ; Models, Molecular ; Mutation/genetics ; Nuclear Proteins/*metabolism ; Protein Binding ; Protein Structure, Tertiary ; Retinoblastoma Protein/*metabolism ; Spindle Apparatus/metabolism ; Transcription Factors/metabolism
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  • 76
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    Nature Publishing Group (NPG)
    Publication Date: 2010-09-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2010 Sep 2;467(7311):7. doi: 10.1038/467007a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20811412" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Embryo Research/*economics/*legislation & jurisprudence ; *Embryonic Stem Cells ; Financing, Government/legislation & jurisprudence ; Humans ; National Institutes of Health (U.S.)/economics/*legislation & jurisprudence ; United States
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  • 77
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    Nature Publishing Group (NPG)
    Publication Date: 2010-10-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Penzias, Arno Allan -- England -- Nature. 2010 Oct 14;467(7317):S4. doi: 10.1038/467S4a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20944619" target="_blank"〉PubMed〈/a〉
    Keywords: Computing Methodologies ; Genomics ; *Nobel Prize ; Physics ; Politics ; Private Sector ; Public Opinion ; Public Policy ; Research/trends ; *Research Personnel
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  • 78
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2010-06-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2010 Jun 17;465(7300):852. doi: 10.1038/465852a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20559353" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Consent Forms/*ethics/standards ; *Embryonic Stem Cells ; Humans ; National Institutes of Health (U.S.)/*ethics/legislation & ; jurisprudence/standards ; United States
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  • 79
    Publication Date: 2010-02-26
    Description: Despite the essential roles of sphingolipids both as structural components of membranes and critical signalling molecules, we have a limited understanding of how cells sense and regulate their levels. Here we reveal the function in sphingolipid metabolism of the ORM genes (known as ORMDL genes in humans)-a conserved gene family that includes ORMDL3, which has recently been identified as a potential risk factor for childhood asthma. Starting from an unbiased functional genomic approach in Saccharomyces cerevisiae, we identify Orm proteins as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase, the first and rate-limiting enzyme in sphingolipid production. We also define a regulatory pathway in which phosphorylation of Orm proteins relieves their inhibitory activity when sphingolipid production is disrupted. Changes in ORM gene expression or mutations to their phosphorylation sites cause dysregulation of sphingolipid metabolism. Our work identifies the Orm proteins as critical mediators of sphingolipid homeostasis and raises the possibility that sphingolipid misregulation contributes to the development of childhood asthma.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877384/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877384/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Breslow, David K -- Collins, Sean R -- Bodenmiller, Bernd -- Aebersold, Ruedi -- Simons, Kai -- Shevchenko, Andrej -- Ejsing, Christer S -- Weissman, Jonathan S -- N01-HV-28179/HV/NHLBI NIH HHS/ -- P50 GM073210/GM/NIGMS NIH HHS/ -- P50 GM073210-06/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Feb 25;463(7284):1048-53. doi: 10.1038/nature08787.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cellular and Molecular Pharmacology, University of California, San Francisco, 1700 4th Street, San Francisco, California 94158, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20182505" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Asthma/metabolism ; Cell Line ; Conserved Sequence ; Fatty Acids, Monounsaturated/pharmacology ; HeLa Cells ; *Homeostasis ; Humans ; Molecular Sequence Data ; *Multigene Family ; Multiprotein Complexes/chemistry/metabolism ; Phosphoric Monoester Hydrolases/genetics/metabolism ; Phosphorylation ; Protein Binding ; Saccharomyces cerevisiae/drug effects/enzymology/genetics/*metabolism ; Saccharomyces cerevisiae Proteins/classification/genetics/*metabolism ; Serine C-Palmitoyltransferase/genetics/metabolism ; Sphingolipids/biosynthesis/*metabolism
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  • 80
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    Nature Publishing Group (NPG)
    Publication Date: 2010-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Abbott, Alison -- England -- Nature. 2010 Dec 16;468(7326):879. doi: 10.1038/468879a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21164453" target="_blank"〉PubMed〈/a〉
    Keywords: Cooperative Behavior ; Drug-Related Side Effects and Adverse Reactions ; Germany ; Hepatocytes/metabolism ; Humans ; Interdisciplinary Communication ; Liver/*physiology ; Models, Biological ; Pharmaceutical Preparations/metabolism ; Physics ; Research Personnel ; Systems Biology/economics/manpower/*trends
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  • 81
    Publication Date: 2010-03-09
    Description: The tumour suppressor ARF is specifically required for p53 activation under oncogenic stress. Recent studies showed that p53 activation mediated by ARF, but not that induced by DNA damage, acts as a major protection against tumorigenesis in vivo under certain biological settings, suggesting that the ARF-p53 axis has more fundamental functions in tumour suppression than originally thought. Because ARF is a very stable protein in most human cell lines, it has been widely assumed that ARF induction is mediated mainly at the transcriptional level and that activation of the ARF-p53 pathway by oncogenes is a much slower and largely irreversible process by comparison with p53 activation after DNA damage. Here we report that ARF is very unstable in normal human cells but that its degradation is inhibited in cancerous cells. Through biochemical purification, we identified a specific ubiquitin ligase for ARF and named it ULF. ULF interacts with ARF both in vitro and in vivo and promotes the lysine-independent ubiquitylation and degradation of ARF. ULF knockdown stabilizes ARF in normal human cells, triggering ARF-dependent, p53-mediated growth arrest. Moreover, nucleophosmin (NPM) and c-Myc, both of which are commonly overexpressed in cancer cells, are capable of abrogating ULF-mediated ARF ubiquitylation through distinct mechanisms, and thereby promote ARF stabilization in cancer cells. These findings reveal the dynamic feature of the ARF-p53 pathway and suggest that transcription-independent mechanisms are critically involved in ARF regulation during responses to oncogenic stress.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737736/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737736/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chen, Delin -- Shan, Jing -- Zhu, Wei-Guo -- Qin, Jun -- Gu, Wei -- P01 CA080058/CA/NCI NIH HHS/ -- P01 CA097403/CA/NCI NIH HHS/ -- R01 CA085533/CA/NCI NIH HHS/ -- R01 CA118561/CA/NCI NIH HHS/ -- R01 CA129627/CA/NCI NIH HHS/ -- R01 CA131439/CA/NCI NIH HHS/ -- England -- Nature. 2010 Mar 25;464(7288):624-7. doi: 10.1038/nature08820. Epub 2010 Mar 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Cancer Genetics, and Department of Pathology and Cell Biology College of Physicians & Surgeons, Columbia University, 1130 St Nicholas Avenue, New York, New York 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20208519" target="_blank"〉PubMed〈/a〉
    Keywords: ADP-Ribosylation Factors/*metabolism ; Cell Line ; Fibroblasts/metabolism ; *Gene Expression Regulation ; Humans ; Molecular Sequence Data ; Nuclear Proteins/metabolism ; Proto-Oncogene Proteins c-myc/metabolism ; Stress, Physiological/*physiology ; Tumor Suppressor Protein p53/*metabolism ; U937 Cells ; Ubiquitin-Protein Ligases/metabolism ; Ubiquitination
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  • 82
    Publication Date: 2010-09-11
    Description: Dendritic cells serve a key function in host defence, linking innate detection of microbes to activation of pathogen-specific adaptive immune responses. Whether there is cell-intrinsic recognition of human immunodeficiency virus (HIV) by host innate pattern-recognition receptors and subsequent coupling to antiviral T-cell responses is not yet known. Dendritic cells are largely resistant to infection with HIV-1, but facilitate infection of co-cultured T-helper cells through a process of trans-enhancement. Here we show that, when dendritic cell resistance to infection is circumvented, HIV-1 induces dendritic cell maturation, an antiviral type I interferon response and activation of T cells. This innate response is dependent on the interaction of newly synthesized HIV-1 capsid with cellular cyclophilin A (CYPA) and the subsequent activation of the transcription factor IRF3. Because the peptidylprolyl isomerase CYPA also interacts with HIV-1 capsid to promote infectivity, our results indicate that capsid conformation has evolved under opposing selective pressures for infectivity versus furtiveness. Thus, a cell-intrinsic sensor for HIV-1 exists in dendritic cells and mediates an antiviral immune response, but it is not typically engaged owing to the absence of dendritic cell infection. The virulence of HIV-1 may be related to evasion of this response, the manipulation of which may be necessary to generate an effective HIV-1 vaccine.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051279/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051279/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Manel, Nicolas -- Hogstad, Brandon -- Wang, Yaming -- Levy, David E -- Unutmaz, Derya -- Littman, Dan R -- AI28900/AI/NIAID NIH HHS/ -- AI33856/AI/NIAID NIH HHS/ -- R01 AI033856/AI/NIAID NIH HHS/ -- R01 AI033856-16/AI/NIAID NIH HHS/ -- R01AI065303/AI/NIAID NIH HHS/ -- R21 AI084633/AI/NIAID NIH HHS/ -- U54-AI057158/AI/NIAID NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Sep 9;467(7312):214-7. doi: 10.1038/nature09337.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Molecular Pathogenesis Program, The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York 10016, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20829794" target="_blank"〉PubMed〈/a〉
    Keywords: Capsid Proteins/immunology ; Cell Line ; Cyclophilin A/immunology ; Dendritic Cells/cytology/*immunology/metabolism/*virology ; HIV Infections/*immunology/virology ; HIV-1/*immunology/physiology ; Humans ; *Immunity, Innate ; Interferon Regulatory Factor-3/genetics/metabolism ; Lymphocyte Activation ; Monocytes/cytology ; T-Lymphocytes/immunology
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  • 83
    Publication Date: 2010-12-24
    Description: The multi-component mechanistic target of rapamycin complex 1 (mTORC1) kinase is the central node of a mammalian pathway that coordinates cell growth with the availability of nutrients, energy and growth factors. Progress has been made in the identification of mTORC1 pathway components and in understanding their functions in cells, but there is relatively little known about the role of the pathway in vivo. Specifically, we have little knowledge regarding the role mTOCR1 has in liver physiology. In fasted animals, the liver performs numerous functions that maintain whole-body homeostasis, including the production of ketone bodies for peripheral tissues to use as energy sources. Here we show that mTORC1 controls ketogenesis in mice in response to fasting. We find that liver-specific loss of TSC1 (tuberous sclerosis 1), an mTORC1 inhibitor, leads to a fasting-resistant increase in liver size, and to a pronounced defect in ketone body production and ketogenic gene expression on fasting. The loss of raptor (regulatory associated protein of mTOR, complex 1) an essential mTORC1 component, has the opposite effects. In addition, we find that the inhibition of mTORC1 is required for the fasting-induced activation of PPARalpha (peroxisome proliferator activated receptor alpha), the master transcriptional activator of ketogenic genes, and that suppression of NCoR1 (nuclear receptor co-repressor 1), a co-repressor of PPARalpha, reactivates ketogenesis in cells and livers with hyperactive mTORC1 signalling. Like livers with activated mTORC1, livers from aged mice have a defect in ketogenesis, which correlates with an increase in mTORC1 signalling. Moreover, we show that the suppressive effects of mTORC1 activation and ageing on PPARalpha activity and ketone production are not additive, and that mTORC1 inhibition is sufficient to prevent the ageing-induced defect in ketogenesis. Thus, our findings reveal that mTORC1 is a key regulator of PPARalpha function and hepatic ketogenesis and suggest a role for mTORC1 activity in promoting the ageing of the liver.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sengupta, Shomit -- Peterson, Timothy R -- Laplante, Mathieu -- Oh, Stephanie -- Sabatini, David M -- CA103866/CA/NCI NIH HHS/ -- CA129105/CA/NCI NIH HHS/ -- R01 CA129105/CA/NCI NIH HHS/ -- R01 CA129105-04/CA/NCI NIH HHS/ -- Canadian Institutes of Health Research/Canada -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Dec 23;468(7327):1100-4. doi: 10.1038/nature09584.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, Massachusetts 02142, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21179166" target="_blank"〉PubMed〈/a〉
    Keywords: *Aging ; Animals ; Cell Line ; Fasting/*metabolism ; *Gene Expression Regulation ; Humans ; Ketone Bodies/*biosynthesis/metabolism ; Liver/metabolism ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Multiprotein Complexes ; Nuclear Receptor Co-Repressor 1/metabolism ; PPAR alpha/antagonists & inhibitors/metabolism ; Proteins/genetics/*metabolism ; TOR Serine-Threonine Kinases
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  • 84
    Publication Date: 2010-09-08
    Description: Cell cycle checkpoints are implemented to safeguard the genome, avoiding the accumulation of genetic errors. Checkpoint loss results in genomic instability and contributes to the evolution of cancer. Among G1-, S-, G2- and M-phase checkpoints, genetic studies indicate the role of an intact S-phase checkpoint in maintaining genome integrity. Although the basic framework of the S-phase checkpoint in multicellular organisms has been outlined, the mechanistic details remain to be elucidated. Human chromosome-11 band-q23 translocations disrupting the MLL gene lead to poor prognostic leukaemias. Here we assign MLL as a novel effector in the mammalian S-phase checkpoint network and identify checkpoint dysfunction as an underlying mechanism of MLL leukaemias. MLL is phosphorylated at serine 516 by ATR in response to genotoxic stress in the S phase, which disrupts its interaction with, and hence its degradation by, the SCF(Skp2) E3 ligase, leading to its accumulation. Stabilized MLL protein accumulates on chromatin, methylates histone H3 lysine 4 at late replication origins and inhibits the loading of CDC45 to delay DNA replication. Cells deficient in MLL showed radioresistant DNA synthesis and chromatid-type genomic abnormalities, indicative of S-phase checkpoint dysfunction. Reconstitution of Mll(-/-) (Mll also known as Mll1) mouse embryonic fibroblasts with wild-type but not S516A or DeltaSET mutant MLL rescues the S-phase checkpoint defects. Moreover, murine myeloid progenitor cells carrying an Mll-CBP knock-in allele that mimics human t(11;16) leukaemia show a severe radioresistant DNA synthesis phenotype. MLL fusions function as dominant negative mutants that abrogate the ATR-mediated phosphorylation/stabilization of wild-type MLL on damage to DNA, and thus compromise the S-phase checkpoint. Together, our results identify MLL as a key constituent of the mammalian DNA damage response pathway and show that deregulation of the S-phase checkpoint incurred by MLL translocations probably contributes to the pathogenesis of human MLL leukaemias.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940944/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940944/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, Han -- Takeda, Shugaku -- Kumar, Rakesh -- Westergard, Todd D -- Brown, Eric J -- Pandita, Tej K -- Cheng, Emily H-Y -- Hsieh, James J-D -- CA119008/CA/NCI NIH HHS/ -- CA123232/CA/NCI NIH HHS/ -- CA129537/CA/NCI NIH HHS/ -- R01 CA119008/CA/NCI NIH HHS/ -- R01 CA119008-01/CA/NCI NIH HHS/ -- R01 CA119008-02/CA/NCI NIH HHS/ -- R01 CA119008-03/CA/NCI NIH HHS/ -- R01 CA119008-04/CA/NCI NIH HHS/ -- R01 CA119008-05/CA/NCI NIH HHS/ -- England -- Nature. 2010 Sep 16;467(7313):343-6. doi: 10.1038/nature09350. Epub 2010 Sep 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Washington University School of Medicine, St Louis, Missouri 63110, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20818375" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Ataxia Telangiectasia Mutated Proteins ; Cell Cycle Proteins/*metabolism ; Cell Line ; Chromatin/metabolism ; DNA Damage ; DNA Replication/physiology ; Genes, Dominant/genetics ; Genomic Instability/physiology ; Histone-Lysine N-Methyltransferase ; Histones/chemistry/metabolism ; Humans ; Leukemia/genetics ; Lysine/metabolism ; Methylation ; Mice ; Myeloid Progenitor Cells/metabolism ; Myeloid-Lymphoid Leukemia Protein/chemistry/deficiency/genetics/*metabolism ; Phosphorylation ; Phosphoserine/metabolism ; Protein Binding ; Protein-Serine-Threonine Kinases/*metabolism ; S Phase/*physiology ; S-Phase Kinase-Associated Proteins/metabolism ; Signal Transduction ; Translocation, Genetic/genetics
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  • 85
    Publication Date: 2010-10-22
    Description: Two forms of X-chromosome inactivation (XCI) ensure the selective silencing of female sex chromosomes during mouse embryogenesis. Imprinted XCI begins with the detection of Xist RNA expression on the paternal X chromosome (Xp) at about the four-cell stage of embryonic development. In the embryonic tissues of the inner cell mass, a random form of XCI occurs in blastocysts that inactivates either Xp or the maternal X chromosome (Xm). Both forms of XCI require the non-coding Xist RNA that coats the inactive X chromosome from which it is expressed. Xist has crucial functions in the silencing of X-linked genes, including Rnf12 (refs 3, 4) encoding the ubiquitin ligase RLIM (RING finger LIM-domain-interacting protein). Here we show, by targeting a conditional knockout of Rnf12 to oocytes where RLIM accumulates to high levels, that the maternal transmission of the mutant X chromosome (Deltam) leads to lethality in female embryos as a result of defective imprinted XCI. We provide evidence that in Deltam female embryos the initial formation of Xist clouds and Xp silencing are inhibited. In contrast, embryonic stem cells lacking RLIM are able to form Xist clouds and silence at least some X-linked genes during random XCI. These results assign crucial functions to the maternal deposit of Rnf12/RLIM for the initiation of imprinted XCI.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967734/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967734/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shin, Jongdae -- Bossenz, Michael -- Chung, Young -- Ma, Hong -- Byron, Meg -- Taniguchi-Ishigaki, Naoko -- Zhu, Xiaochun -- Jiao, Baowei -- Hall, Lisa L -- Green, Michael R -- Jones, Stephen N -- Hermans-Borgmeyer, Irm -- Lawrence, Jeanne B -- Bach, Ingolf -- 5 P30 DK32520/DK/NIDDK NIH HHS/ -- DK32520/DK/NIDDK NIH HHS/ -- GM053234/GM/NIGMS NIH HHS/ -- R01 CA131158/CA/NCI NIH HHS/ -- R01 CA131158-04/CA/NCI NIH HHS/ -- R01 GM033977/GM/NIGMS NIH HHS/ -- R01 GM053234/GM/NIGMS NIH HHS/ -- R01CA131158/CA/NCI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2010 Oct 21;467(7318):977-81. doi: 10.1038/nature09457.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Program in Gene Function and Expression, University of Massachusetts Medical School (UMMS), Worcester, Massachusetts 01605, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20962847" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Congenic ; Blastocyst/metabolism ; Cell Line ; Chromosomes, Mammalian/*genetics ; Embryo Loss/genetics ; Fathers ; Female ; Gene Silencing ; *Genomic Imprinting ; Male ; Mice ; Mice, Transgenic ; *Mothers ; RNA, Long Noncoding ; RNA, Untranslated/genetics ; Repressor Proteins/deficiency/genetics/*metabolism ; Ubiquitin-Protein Ligases ; X Chromosome/*genetics ; X Chromosome Inactivation/*genetics
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  • 86
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2010-09-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2010 Sep 2;467(7311):12-3. doi: 10.1038/467012a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20811425" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Embryo Research/*economics/*legislation & jurisprudence ; *Embryonic Stem Cells ; Financing, Government/*legislation & jurisprudence ; Humans
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  • 87
    Publication Date: 2010-02-19
    Description: Endogenous retroviruses (ERVs), retrovirus-like elements with long terminal repeats, are widely dispersed in the euchromatic compartment in mammalian cells, comprising approximately 10% of the mouse genome. These parasitic elements are responsible for 〉10% of spontaneous mutations. Whereas DNA methylation has an important role in proviral silencing in somatic and germ-lineage cells, an additional DNA-methylation-independent pathway also functions in embryonal carcinoma and embryonic stem (ES) cells to inhibit transcription of the exogenous gammaretrovirus murine leukaemia virus (MLV). Notably, a recent genome-wide study revealed that ERVs are also marked by histone H3 lysine 9 trimethylation (H3K9me3) and H4K20me3 in ES cells but not in mouse embryonic fibroblasts. However, the role that these marks have in proviral silencing remains unexplored. Here we show that the H3K9 methyltransferase ESET (also called SETDB1 or KMT1E) and the Kruppel-associated box (KRAB)-associated protein 1 (KAP1, also called TRIM28) are required for H3K9me3 and silencing of endogenous and introduced retroviruses specifically in mouse ES cells. Furthermore, whereas ESET enzymatic activity is crucial for HP1 binding and efficient proviral silencing, the H4K20 methyltransferases Suv420h1 and Suv420h2 are dispensable for silencing. Notably, in DNA methyltransferase triple knockout (Dnmt1(-/-)Dnmt3a(-/-)Dnmt3b(-/-)) mouse ES cells, ESET and KAP1 binding and ESET-mediated H3K9me3 are maintained and ERVs are minimally derepressed. We propose that a DNA-methylation-independent pathway involving KAP1 and ESET/ESET-mediated H3K9me3 is required for proviral silencing during the period early in embryogenesis when DNA methylation is dynamically reprogrammed.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Matsui, Toshiyuki -- Leung, Danny -- Miyashita, Hiroki -- Maksakova, Irina A -- Miyachi, Hitoshi -- Kimura, Hiroshi -- Tachibana, Makoto -- Lorincz, Matthew C -- Shinkai, Yoichi -- 77805/Canadian Institutes of Health Research/Canada -- 92090/Canadian Institutes of Health Research/Canada -- England -- Nature. 2010 Apr 8;464(7290):927-31. doi: 10.1038/nature08858. Epub 2010 Feb 17.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Experimental Research Center for Infectious Diseases, Institute for Virus Research, Kyoto University, 53 Shogoin, Kawara-cho, Sakyo-ku, Kyoto 606-8507, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20164836" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; DNA (Cytosine-5-)-Methyltransferase/deficiency/genetics/metabolism ; DNA Methylation/genetics ; Embryonic Stem Cells/*enzymology/metabolism/*virology ; Endogenous Retroviruses/*genetics ; Fibroblasts ; Gene Deletion ; *Gene Silencing ; Histone-Lysine N-Methyltransferase/deficiency/genetics/*metabolism ; Mice ; Nuclear Proteins/metabolism ; Protein Methyltransferases/deficiency/genetics/*metabolism ; Proviruses/*genetics ; Repressor Proteins/metabolism
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  • 88
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2008-03-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shadan, Sadaf -- England -- Nature. 2008 Mar 20;452(7185):296. doi: 10.1038/452296b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18354470" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anthelmintics/*pharmacology/therapeutic use/toxicity ; Antioxidants/metabolism ; Cell Line ; *Drug Evaluation, Preclinical ; Drug Resistance ; Humans ; Mice ; Oxadiazoles/*pharmacology/toxicity ; Praziquantel/pharmacology/therapeutic use/toxicity ; Schistosoma mansoni/drug effects/metabolism ; Schistosomiasis/*drug therapy/*parasitology
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  • 89
    Publication Date: 2008-09-30
    Description: Ca(2+)-release-activated Ca(2+) (CRAC) channels underlie sustained Ca(2+) signalling in lymphocytes and numerous other cells after Ca(2+) liberation from the endoplasmic reticulum (ER). RNA interference screening approaches identified two proteins, Stim and Orai, that together form the molecular basis for CRAC channel activity. Stim senses depletion of the ER Ca(2+) store and physically relays this information by translocating from the ER to junctions adjacent to the plasma membrane, and Orai embodies the pore of the plasma membrane calcium channel. A close interaction between Stim and Orai, identified by co-immunoprecipitation and by Forster resonance energy transfer, is involved in the opening of the Ca(2+) channel formed by Orai subunits. Most ion channels are multimers of pore-forming subunits surrounding a central channel, which are preassembled in the ER and transported in their final stoichiometry to the plasma membrane. Here we show, by biochemical analysis after cross-linking in cell lysates and intact cells and by using non-denaturing gel electrophoresis without cross-linking, that Orai is predominantly a dimer in the plasma membrane under resting conditions. Moreover, single-molecule imaging of green fluorescent protein (GFP)-tagged Orai expressed in Xenopus oocytes showed predominantly two-step photobleaching, again consistent with a dimeric basal state. In contrast, co-expression of GFP-tagged Orai with the carboxy terminus of Stim as a cytosolic protein to activate the Orai channel without inducing Ca(2+) store depletion or clustering of Orai into punctae yielded mostly four-step photobleaching, consistent with a tetrameric stoichiometry of the active Orai channel. Interaction with the C terminus of Stim thus induces Orai dimers to dimerize, forming tetramers that constitute the Ca(2+)-selective pore. This represents a new mechanism in which assembly and activation of the functional ion channel are mediated by the same triggering molecule.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2597643/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2597643/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Penna, Aubin -- Demuro, Angelo -- Yeromin, Andriy V -- Zhang, Shenyuan L -- Safrina, Olga -- Parker, Ian -- Cahalan, Michael D -- P30 CA062203/CA/NCI NIH HHS/ -- R37 NS014609/NS/NINDS NIH HHS/ -- R37 NS014609-29/NS/NINDS NIH HHS/ -- England -- Nature. 2008 Nov 6;456(7218):116-20. doi: 10.1038/nature07338. Epub 2008 Sep 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology and Biophysics, University of California Irvine, California 92697-4561, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18820677" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Calcium Channels/*chemistry/genetics/*metabolism ; Cell Line ; Cross-Linking Reagents ; Drosophila Proteins/*chemistry/genetics/*metabolism ; Drosophila melanogaster/*chemistry/*metabolism ; Humans ; Membrane Proteins/*chemistry/genetics/*metabolism ; Oocytes/metabolism ; Photobleaching ; Protein Multimerization ; Protein Structure, Quaternary ; Xenopus ; Xenopus Proteins/*chemistry/genetics/*metabolism
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  • 90
    Publication Date: 2008-10-03
    Description: Bacterial virulence determinants can be identified, according to the molecular Koch's postulates, if inactivation of a gene associated with a suspected virulence trait results in a loss in pathogenicity. This approach is commonly used with genetically tractable organisms. However, the current lack of tools for targeted gene disruptions in obligate intracellular microbial pathogens seriously hampers the identification of their virulence factors. Here we demonstrate an approach to studying potential virulence factors of genetically intractable organisms, such as Chlamydia. Heterologous expression of Chlamydia pneumoniae CopN in yeast and mammalian cells resulted in a cell cycle arrest, presumably owing to alterations in the microtubule cytoskeleton. A screen of a small molecule library identified two compounds that alleviated CopN-induced growth inhibition in yeast. These compounds interfered with C. pneumoniae replication in mammalian cells, presumably by 'knocking out' CopN function, revealing an essential role of CopN in the support of C. pneumoniae growth during infection. This work demonstrates the role of a specific chlamydial protein in virulence. The chemical biology approach described here can be used to identify virulence factors, and the reverse chemical genetic strategy can result in the identification of lead compounds for the development of novel therapeutics.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673727/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673727/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huang, Jin -- Lesser, Cammie F -- Lory, Stephen -- R01 AI064285/AI/NIAID NIH HHS/ -- R01 AI064285-03/AI/NIAID NIH HHS/ -- England -- Nature. 2008 Nov 6;456(7218):112-5. doi: 10.1038/nature07355. Epub 2008 Oct 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology and Molecular Genetics, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18830244" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacterial Proteins/antagonists & inhibitors/genetics/*metabolism ; Cell Cycle ; Cell Line ; Chlamydophila pneumoniae/drug effects/genetics/*growth & ; development/*pathogenicity ; Gene Expression ; Genes, Essential ; Heterocyclic Compounds with 4 or More Rings/pharmacology ; Humans ; Intracellular Space/*microbiology ; Microtubules/metabolism ; Saccharomyces cerevisiae/cytology/drug effects/genetics/metabolism ; Virulence/drug effects ; Virulence Factors/antagonists & inhibitors/genetics/*metabolism
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  • 91
    Publication Date: 2008-03-14
    Description: Growth factors stimulate cells to take up excess nutrients and to use them for anabolic processes. The biochemical mechanism by which this is accomplished is not fully understood but it is initiated by phosphorylation of signalling proteins on tyrosine residues. Using a novel proteomic screen for phosphotyrosine-binding proteins, we have made the observation that an enzyme involved in glycolysis, the human M2 (fetal) isoform of pyruvate kinase (PKM2), binds directly and selectively to tyrosine-phosphorylated peptides. We show that binding of phosphotyrosine peptides to PKM2 results in release of the allosteric activator fructose-1,6-bisphosphate, leading to inhibition of PKM2 enzymatic activity. We also provide evidence that this regulation of PKM2 by phosphotyrosine signalling diverts glucose metabolites from energy production to anabolic processes when cells are stimulated by certain growth factors. Collectively, our results indicate that expression of this phosphotyrosine-binding form of pyruvate kinase is critical for rapid growth in cancer cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Christofk, Heather R -- Vander Heiden, Matthew G -- Wu, Ning -- Asara, John M -- Cantley, Lewis C -- R01 GM056203/GM/NIGMS NIH HHS/ -- T32 CA009172/CA/NCI NIH HHS/ -- England -- Nature. 2008 Mar 13;452(7184):181-6. doi: 10.1038/nature06667.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Systems Biology.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18337815" target="_blank"〉PubMed〈/a〉
    Keywords: Allosteric Site ; Animals ; Catalysis ; Cell Line ; Cell Proliferation/drug effects ; Cells/drug effects/metabolism ; HeLa Cells ; Humans ; Lysine/metabolism ; Models, Molecular ; Peptide Library ; Phosphotyrosine/*metabolism ; Protein Binding ; Proteomics ; Pyruvate Kinase/antagonists & inhibitors/*metabolism ; Substrate Specificity
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  • 92
    Publication Date: 2008-08-22
    Description: DNA double-strand breaks (DSBs) are repaired by two principal mechanisms: non-homologous end-joining (NHEJ) and homologous recombination (HR). HR is the most accurate DSB repair mechanism but is generally restricted to the S and G2 phases of the cell cycle, when DNA has been replicated and a sister chromatid is available as a repair template. By contrast, NHEJ operates throughout the cell cycle but assumes most importance in G1 (refs 4, 6). The choice between repair pathways is governed by cyclin-dependent protein kinases (CDKs), with a major site of control being at the level of DSB resection, an event that is necessary for HR but not NHEJ, and which takes place most effectively in S and G2 (refs 2, 5). Here we establish that cell-cycle control of DSB resection in Saccharomyces cerevisiae results from the phosphorylation by CDK of an evolutionarily conserved motif in the Sae2 protein. We show that mutating Ser 267 of Sae2 to a non-phosphorylatable residue causes phenotypes comparable to those of a sae2Delta null mutant, including hypersensitivity to camptothecin, defective sporulation, reduced hairpin-induced recombination, severely impaired DNA-end processing and faulty assembly and disassembly of HR factors. Furthermore, a Sae2 mutation that mimics constitutive Ser 267 phosphorylation complements these phenotypes and overcomes the necessity of CDK activity for DSB resection. The Sae2 mutations also cause cell-cycle-stage specific hypersensitivity to DNA damage and affect the balance between HR and NHEJ. These findings therefore provide a mechanistic basis for cell-cycle control of DSB repair and highlight the importance of regulating DSB resection.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2635538/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2635538/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huertas, Pablo -- Cortes-Ledesma, Felipe -- Sartori, Alessandro A -- Aguilera, Andres -- Jackson, Stephen P -- A5290/Cancer Research UK/United Kingdom -- LSHG-CT-2005-512113/Cancer Research UK/United Kingdom -- England -- Nature. 2008 Oct 2;455(7213):689-92. doi: 10.1038/nature07215. Epub 2008 Aug 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Wellcome Trust and Cancer Research UK Gurdon Institute, and Department of Zoology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18716619" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; CDC28 Protein Kinase, S cerevisiae/*metabolism ; Cell Cycle ; Cell Line ; Cell Survival ; Conserved Sequence ; *DNA Breaks, Double-Stranded ; *DNA Repair ; Endodeoxyribonucleases/metabolism ; Endonucleases ; Exodeoxyribonucleases/metabolism ; Humans ; Mutation ; Phosphorylation ; Phosphoserine/metabolism ; Rad52 DNA Repair and Recombination Protein/metabolism ; *Recombination, Genetic ; Saccharomyces cerevisiae/enzymology/*genetics/*metabolism ; Saccharomyces cerevisiae Proteins/chemistry/*metabolism
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  • 93
    Publication Date: 2008-10-25
    Description: BAX is a pro-apoptotic protein of the BCL-2 family that is stationed in the cytosol until activated by a diversity of stress stimuli to induce cell death. Anti-apoptotic proteins such as BCL-2 counteract BAX-mediated cell death. Although an interaction site that confers survival functionality has been defined for anti-apoptotic proteins, an activation site has not been identified for BAX, rendering its explicit trigger mechanism unknown. We previously developed stabilized alpha-helix of BCL-2 domains (SAHBs) that directly initiate BAX-mediated mitochondrial apoptosis. Here we demonstrate by NMR analysis that BIM SAHB binds BAX at an interaction site that is distinct from the canonical binding groove characterized for anti-apoptotic proteins. The specificity of the human BIM-SAHB-BAX interaction is highlighted by point mutagenesis that disrupts functional activity, confirming that BAX activation is initiated at this novel structural location. Thus, we have now defined a BAX interaction site for direct activation, establishing a new target for therapeutic modulation of apoptosis.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2597110/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2597110/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gavathiotis, Evripidis -- Suzuki, Motoshi -- Davis, Marguerite L -- Pitter, Kenneth -- Bird, Gregory H -- Katz, Samuel G -- Tu, Ho-Chou -- Kim, Hyungjin -- Cheng, Emily H-Y -- Tjandra, Nico -- Walensky, Loren D -- 5P01CA92625/CA/NCI NIH HHS/ -- 5R01CA125562/CA/NCI NIH HHS/ -- 5R01CA50239/CA/NCI NIH HHS/ -- K99 HL095929/HL/NHLBI NIH HHS/ -- K99 HL095929-01A1/HL/NHLBI NIH HHS/ -- K99 HL095929-02/HL/NHLBI NIH HHS/ -- R00 HL095929/HL/NHLBI NIH HHS/ -- R01 CA050239/CA/NCI NIH HHS/ -- R01 CA125562/CA/NCI NIH HHS/ -- R01 CA125562-02/CA/NCI NIH HHS/ -- Intramural NIH HHS/ -- England -- Nature. 2008 Oct 23;455(7216):1076-81. doi: 10.1038/nature07396.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pediatric Oncology and the Program in Cancer Chemical Biology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18948948" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Apoptosis ; Apoptosis Regulatory Proteins/chemistry/metabolism ; BH3 Interacting Domain Death Agonist Protein/metabolism ; Cell Line ; *Gene Expression Regulation ; Humans ; Membrane Proteins/chemistry/metabolism ; Mice ; Mutagenesis, Site-Directed ; Mutation/genetics ; Nuclear Magnetic Resonance, Biomolecular ; Protein Binding ; Proto-Oncogene Proteins/chemistry/metabolism ; Sequence Alignment ; bcl-2-Associated X Protein/chemistry/*metabolism
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  • 94
    Publication Date: 2008-11-14
    Description: Crosstalk between the oestrogen receptor (ER) and ERBB2/HER-2 pathways has long been implicated in breast cancer aetiology and drug response, yet no direct connection at a transcriptional level has been shown. Here we show that oestrogen-ER and tamoxifen-ER complexes directly repress ERBB2 transcription by means of a cis-regulatory element within the ERBB2 gene in human cell lines. We implicate the paired box 2 gene product (PAX2), in a previously unrecognized role, as a crucial mediator of ER repression of ERBB2 by the anti-cancer drug tamoxifen. We show that PAX2 and the ER co-activator AIB-1/SRC-3 compete for binding and regulation of ERBB2 transcription, the outcome of which determines tamoxifen response in breast cancer cells. The repression of ERBB2 by ER-PAX2 links these two breast cancer subtypes and suggests that aggressive ERBB2-positive tumours can originate from ER-positive luminal tumours by circumventing this repressive mechanism. These data provide mechanistic insight into the molecular basis of endocrine resistance in breast cancer.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920208/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920208/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hurtado, Antoni -- Holmes, Kelly A -- Geistlinger, Timothy R -- Hutcheson, Iain R -- Nicholson, Robert I -- Brown, Myles -- Jiang, Jie -- Howat, William J -- Ali, Simak -- Carroll, Jason S -- P01CA8011105/CA/NCI NIH HHS/ -- R01 DK074967/DK/NIDDK NIH HHS/ -- R01 DK074967-03/DK/NIDDK NIH HHS/ -- R01DK074967/DK/NIDDK NIH HHS/ -- Cancer Research UK/United Kingdom -- England -- Nature. 2008 Dec 4;456(7222):663-6. doi: 10.1038/nature07483. Epub 2008 Nov 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cancer Research UK, Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19005469" target="_blank"〉PubMed〈/a〉
    Keywords: Breast Neoplasms/drug therapy/genetics/pathology ; Cell Line ; Cell Line, Tumor ; Chromatin Immunoprecipitation ; Drug Resistance, Neoplasm/genetics ; Estrogens/metabolism ; Gene Expression Regulation, Neoplastic/drug effects ; Gene Silencing ; Genes, erbB-2/*genetics ; Histone Acetyltransferases ; Humans ; Nuclear Receptor Coactivator 3 ; PAX2 Transcription Factor/deficiency/genetics/*metabolism ; Receptor, ErbB-2/*genetics ; Receptors, Estrogen/*metabolism ; Regulatory Sequences, Nucleic Acid/genetics ; Repressor Proteins/metabolism ; Tamoxifen/metabolism/*pharmacology ; Trans-Activators
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  • 95
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    Nature Publishing Group (NPG)
    Publication Date: 2008-11-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Nov 20;456(7220):282. doi: 10.1038/456282a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020565" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; *Federal Government ; Humans ; Leadership ; National Institutes of Health (U.S.)/*organization & administration ; *Stem Cells/cytology ; United States
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  • 96
    Publication Date: 2008-11-04
    Description: Through alternative processing of pre-messenger RNAs, individual mammalian genes often produce multiple mRNA and protein isoforms that may have related, distinct or even opposing functions. Here we report an in-depth analysis of 15 diverse human tissue and cell line transcriptomes on the basis of deep sequencing of complementary DNA fragments, yielding a digital inventory of gene and mRNA isoform expression. Analyses in which sequence reads are mapped to exon-exon junctions indicated that 92-94% of human genes undergo alternative splicing, 86% with a minor isoform frequency of 15% or more. Differences in isoform-specific read densities indicated that most alternative splicing and alternative cleavage and polyadenylation events vary between tissues, whereas variation between individuals was approximately twofold to threefold less common. Extreme or 'switch-like' regulation of splicing between tissues was associated with increased sequence conservation in regulatory regions and with generation of full-length open reading frames. Patterns of alternative splicing and alternative cleavage and polyadenylation were strongly correlated across tissues, suggesting coordinated regulation of these processes, and sequence conservation of a subset of known regulatory motifs in both alternative introns and 3' untranslated regions suggested common involvement of specific factors in tissue-level regulation of both splicing and polyadenylation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593745/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593745/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, Eric T -- Sandberg, Rickard -- Luo, Shujun -- Khrebtukova, Irina -- Zhang, Lu -- Mayr, Christine -- Kingsmore, Stephen F -- Schroth, Gary P -- Burge, Christopher B -- R01 GM085319/GM/NIGMS NIH HHS/ -- R01 GM085319-01/GM/NIGMS NIH HHS/ -- R01 HG002439/HG/NHGRI NIH HHS/ -- R01 HG002439-07/HG/NHGRI NIH HHS/ -- England -- Nature. 2008 Nov 27;456(7221):470-6. doi: 10.1038/nature07509.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18978772" target="_blank"〉PubMed〈/a〉
    Keywords: Alternative Splicing/*genetics ; Base Sequence ; Cell Line ; Exons/genetics ; *Gene Expression Profiling ; Humans ; Open Reading Frames/genetics ; Organ Specificity ; Polyadenylation ; Protein Isoforms/*genetics ; RNA, Messenger/*analysis/*genetics ; RNA-Binding Proteins/metabolism ; Repressor Proteins/metabolism
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  • 97
    Publication Date: 2008-10-14
    Description: Human primordial germ cells and mouse neonatal and adult germline stem cells are pluripotent and show similar properties to embryonic stem cells. Here we report the successful establishment of human adult germline stem cells derived from spermatogonial cells of adult human testis. Cellular and molecular characterization of these cells revealed many similarities to human embryonic stem cells, and the germline stem cells produced teratomas after transplantation into immunodeficient mice. The human adult germline stem cells differentiated into various types of somatic cells of all three germ layers when grown under conditions used to induce the differentiation of human embryonic stem cells. We conclude that the generation of human adult germline stem cells from testicular biopsies may provide simple and non-controversial access to individual cell-based therapy without the ethical and immunological problems associated with human embryonic stem cells.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Conrad, Sabine -- Renninger, Markus -- Hennenlotter, Jorg -- Wiesner, Tina -- Just, Lothar -- Bonin, Michael -- Aicher, Wilhelm -- Buhring, Hans-Jorg -- Mattheus, Ulrich -- Mack, Andreas -- Wagner, Hans-Joachim -- Minger, Stephen -- Matzkies, Matthias -- Reppel, Michael -- Hescheler, Jurgen -- Sievert, Karl-Dietrich -- Stenzl, Arnulf -- Skutella, Thomas -- England -- Nature. 2008 Nov 20;456(7220):344-9. doi: 10.1038/nature07404. Epub 2008 Oct 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Anatomy, Department of Experimental Embryology, Tubingen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18849962" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Animals ; Biomarkers/metabolism ; Cell Culture Techniques ; Cell Differentiation ; Cell Line ; Cell Lineage ; Cells, Cultured ; Embryonic Stem Cells/cytology/metabolism ; Epigenesis, Genetic ; Gene Expression Profiling ; Humans ; Male ; Mice ; Mice, Nude ; Neoplasm Transplantation ; Pluripotent Stem Cells/*cytology/metabolism ; Spermatogonia/cytology/ultrastructure ; Teratoma/pathology ; Testis/*cytology
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  • 98
    Publication Date: 2008-03-26
    Description: The neuronal repressor REST (RE1-silencing transcription factor; also called NRSF) is expressed at high levels in mouse embryonic stem (ES) cells, but its role in these cells is unclear. Here we show that REST maintains self-renewal and pluripotency in mouse ES cells through suppression of the microRNA miR-21. We found that, as with known self-renewal markers, the level of REST expression is much higher in self-renewing mouse ES cells than in differentiating mouse ES (embryoid body, EB) cells. Heterozygous deletion of Rest (Rest+/-) and its short-interfering-RNA-mediated knockdown in mouse ES cells cause a loss of self-renewal-even when these cells are grown under self-renewal conditions-and lead to the expression of markers specific for multiple lineages. Conversely, exogenously added REST maintains self-renewal in mouse EB cells. Furthermore, Rest+/- mouse ES cells cultured under self-renewal conditions express substantially reduced levels of several self-renewal regulators, including Oct4 (also called Pou5f1), Nanog, Sox2 and c-Myc, and exogenously added REST in mouse EB cells maintains the self-renewal phenotypes and expression of these self-renewal regulators. We also show that in mouse ES cells, REST is bound to the gene chromatin of a set of miRNAs that potentially target self-renewal genes. Whereas mouse ES cells and mouse EB cells containing exogenously added REST express lower levels of these miRNAs, EB cells, Rest+/- ES cells and ES cells treated with short interfering RNA targeting Rest express higher levels of these miRNAs. At least one of these REST-regulated miRNAs, miR-21, specifically suppresses the self-renewal of mouse ES cells, corresponding to the decreased expression of Oct4, Nanog, Sox2 and c-Myc. Thus, REST is a newly discovered element of the interconnected regulatory network that maintains the self-renewal and pluripotency of mouse ES cells.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830094/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830094/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Singh, Sanjay K -- Kagalwala, Mohamedi N -- Parker-Thornburg, Jan -- Adams, Henry -- Majumder, Sadhan -- CA81255/CA/NCI NIH HHS/ -- CA97124/CA/NCI NIH HHS/ -- P30 CA016672/CA/NCI NIH HHS/ -- R01 CA081255/CA/NCI NIH HHS/ -- R01 CA081255-10/CA/NCI NIH HHS/ -- R01 CA097124/CA/NCI NIH HHS/ -- R01 CA097124-07/CA/NCI NIH HHS/ -- England -- Nature. 2008 May 8;453(7192):223-7. doi: 10.1038/nature06863. Epub 2008 Mar 23.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Cancer Genetics, The University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18362916" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomarkers ; Cell Differentiation ; Cell Line ; Cell Lineage ; Cell Proliferation ; Chromatin/genetics/metabolism ; Embryonic Stem Cells/*cytology/*metabolism ; Mice ; Mice, Inbred C57BL ; Pluripotent Stem Cells/*cytology/*metabolism ; Repressor Proteins/genetics/*metabolism ; Transcription Factors/deficiency/genetics/*metabolism
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  • 99
    Publication Date: 2008-02-26
    Description: Maintaining cell shape and tone is crucial for the function and survival of cells and tissues. Mechanotransduction relies on the transformation of minuscule mechanical forces into high-fidelity electrical responses. When mechanoreceptors are stimulated, mechanically sensitive cation channels open and produce an inward transduction current that depolarizes the cell. For this process to operate effectively, the transduction machinery has to retain integrity and remain unfailingly independent of environmental changes. This is particularly challenging for poikilothermic organisms, where changes in temperature in the environment may impact the function of mechanoreceptor neurons. Thus, we wondered how insects whose habitat might quickly vary over several tens of degrees of temperature manage to maintain highly effective mechanical senses. We screened for Drosophila mutants with defective mechanical responses at elevated ambient temperatures, and identified a gene, spam, whose role is to protect the mechanosensory organ from massive cellular deformation caused by heat-induced osmotic imbalance. Here we show that Spam protein forms an extracellular shield that guards mechanosensory neurons from environmental insult. Remarkably, heterologously expressed Spam protein also endowed other cells with superb defence against physically and chemically induced deformation. We studied the mechanical impact of Spam coating and show that spam-coated cells are up to ten times stiffer than uncoated controls. Together, these results help explain how poikilothermic organisms preserve the architecture of critical cells during environmental stress, and illustrate an elegant and simple solution to such challenge.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387185/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2387185/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cook, Boaz -- Hardy, Robert W -- McConnaughey, William B -- Zuker, Charles S -- R01 EY006979/EY/NEI NIH HHS/ -- R01 EY006979-18/EY/NEI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 Mar 20;452(7185):361-4. doi: 10.1038/nature06603. Epub 2008 Feb 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Departments of Neurobiology and Neurosciences, University of California at San Diego, La Jolla, California 92093-0649, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18297055" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; Cell Shape/*drug effects/*physiology ; Drosophila Proteins/genetics/metabolism ; Drosophila melanogaster/*cytology/drug effects/genetics/physiology ; Electrophysiology ; *Environment ; Eye Proteins/genetics/metabolism ; Hot Temperature ; Humidity ; Mechanoreceptors/cytology/physiology ; Mechanotransduction, Cellular/*drug effects/*physiology ; Models, Biological ; Osmotic Pressure ; Stimulation, Chemical ; Stress, Mechanical
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  • 100
    Publication Date: 2008-07-11
    Description: Polo-like kinase-1 (PLK1) is an essential mitotic kinase regulating multiple aspects of the cell division process. Activation of PLK1 requires phosphorylation of a conserved threonine residue (Thr 210) in the T-loop of the PLK1 kinase domain, but the kinase responsible for this has not yet been affirmatively identified. Here we show that in human cells PLK1 activation occurs several hours before entry into mitosis, and requires aurora A (AURKA, also known as STK6)-dependent phosphorylation of Thr 210. We find that aurora A can directly phosphorylate PLK1 on Thr 210, and that activity of aurora A towards PLK1 is greatly enhanced by Bora (also known as C13orf34 and FLJ22624), a known cofactor for aurora A (ref. 7). We show that Bora/aurora-A-dependent phosphorylation is a prerequisite for PLK1 to promote mitotic entry after a checkpoint-dependent arrest. Importantly, expression of a PLK1-T210D phospho-mimicking mutant partially overcomes the requirement for aurora A in checkpoint recovery. Taken together, these data demonstrate that the initial activation of PLK1 is a primary function of aurora A.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Macurek, Libor -- Lindqvist, Arne -- Lim, Dan -- Lampson, Michael A -- Klompmaker, Rob -- Freire, Raimundo -- Clouin, Christophe -- Taylor, Stephen S -- Yaffe, Michael B -- Medema, Rene H -- CA112967/CA/NCI NIH HHS/ -- GM-60594/GM/NIGMS NIH HHS/ -- England -- Nature. 2008 Sep 4;455(7209):119-23. doi: 10.1038/nature07185. Epub 2008 Jul 9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medical Oncology, University Medical Center Utrecht, Utrecht 3584CG, The Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18615013" target="_blank"〉PubMed〈/a〉
    Keywords: Aurora Kinase A ; Aurora Kinases ; Cell Cycle/*physiology ; Cell Cycle Proteins/genetics/*metabolism ; Cell Line ; DNA Damage ; Enzyme Activation ; Humans ; Mitosis ; Molecular Sequence Data ; Phosphorylation ; Phosphothreonine/metabolism ; Protein-Serine-Threonine Kinases/genetics/*metabolism ; Proto-Oncogene Proteins/genetics/*metabolism ; Time Factors
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