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  • 101
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    Nature Publishing Group (NPG)
    Publication Date: 2015-08-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2015 Aug 27;524(7566):387. doi: 10.1038/524387a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26310730" target="_blank"〉PubMed〈/a〉
    Keywords: Benzimidazoles/adverse effects/pharmacology ; Drug Approval/*legislation & jurisprudence ; Female ; Humans ; Lobbying ; Male ; Sex Factors ; Time Factors ; United States ; United States Food and Drug Administration/*ethics/*legislation & jurisprudence ; Women's Health
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 102
    Publication Date: 2015-03-04
    Description: The climatic impact of CO2 and other greenhouse gases is usually quantified in terms of radiative forcing, calculated as the difference between estimates of the Earth's radiation field from pre-industrial and present-day concentrations of these gases. Radiative transfer models calculate that the increase in CO2 since 1750 corresponds to a global annual-mean radiative forcing at the tropopause of 1.82 +/- 0.19 W m(-2) (ref. 2). However, despite widespread scientific discussion and modelling of the climate impacts of well-mixed greenhouse gases, there is little direct observational evidence of the radiative impact of increasing atmospheric CO2. Here we present observationally based evidence of clear-sky CO2 surface radiative forcing that is directly attributable to the increase, between 2000 and 2010, of 22 parts per million atmospheric CO2. The time series of this forcing at the two locations-the Southern Great Plains and the North Slope of Alaska-are derived from Atmospheric Emitted Radiance Interferometer spectra together with ancillary measurements and thoroughly corroborated radiative transfer calculations. The time series both show statistically significant trends of 0.2 W m(-2) per decade (with respective uncertainties of +/-0.06 W m(-2) per decade and +/-0.07 W m(-2) per decade) and have seasonal ranges of 0.1-0.2 W m(-2). This is approximately ten per cent of the trend in downwelling longwave radiation. These results confirm theoretical predictions of the atmospheric greenhouse effect due to anthropogenic emissions, and provide empirical evidence of how rising CO2 levels, mediated by temporal variations due to photosynthesis and respiration, are affecting the surface energy balance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Feldman, D R -- Collins, W D -- Gero, P J -- Torn, M S -- Mlawer, E J -- Shippert, T R -- England -- Nature. 2015 Mar 19;519(7543):339-43. doi: 10.1038/nature14240. Epub 2015 Feb 25.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Lawrence Berkeley National Laboratory, Earth Sciences Division, 1 Cyclotron Road, MS 74R-316C, Berkeley, California 94720, USA. ; 1] Lawrence Berkeley National Laboratory, Earth Sciences Division, 1 Cyclotron Road, MS 74R-316C, Berkeley, California 94720, USA [2] University of California-Berkeley, Department of Earth and Planetary Science, 307 McCone Hall, MC 4767, Berkeley, California 94720, USA. ; University of Wisconsin-Madison, Space Science and Engineering Center, 1225 W. Dayton Street, Madison, Wisconsin 53706, USA. ; 1] Lawrence Berkeley National Laboratory, Earth Sciences Division, 1 Cyclotron Road, MS 74R-316C, Berkeley, California 94720, USA [2] University of California-Berkeley, Energy and Resources Group, Berkeley, 310 Barrows Hall, MC 3050, California 94720, USA. ; Atmospheric and Environmental Research, Inc., 131 Hartwell Avenue, Lexington, Massachusetts 02141, USA. ; Pacific Northwest National Laboratory, Fundamental and Computational Sciences, 902 Battelle Boulevard, Richland, Washington 99354, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25731165" target="_blank"〉PubMed〈/a〉
    Keywords: Alaska ; Atmosphere/chemistry ; *Carbon Dioxide/analysis ; Cell Respiration ; Greenhouse Effect/statistics & numerical data ; *Infrared Rays ; Models, Theoretical ; *Observation ; Photosynthesis ; Seasons ; Time Factors
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  • 103
    Publication Date: 2015-01-22
    Description: In a warming climate, surface meltwater production on large ice sheets is expected to increase. If this water is delivered to the ice sheet base it may have important consequences for ice dynamics. For example, basal water distributed in a diffuse network can decrease basal friction and accelerate ice flow, whereas channelized basal water can move quickly to the ice margin, where it can alter fjord circulation and submarine melt rates. Less certain is whether surface meltwater can be trapped and stored in subglacial lakes beneath large ice sheets. Here we show that a subglacial lake in Greenland drained quickly, as seen in the collapse of the ice surface, and then refilled from surface meltwater input. We use digital elevation models from stereo satellite imagery and airborne measurements to resolve elevation changes during the evolution of the surface and basal hydrologic systems at the Flade Isblink ice cap in northeast Greenland. During the autumn of 2011, a collapse basin about 70 metres deep and about 0.4 cubic kilometres in volume formed near the southern summit of the ice cap as a subglacial lake drained into a nearby fjord. Over the next two years, rapid uplift of the floor of the basin (which is approximately 8.4 square kilometres in area) occurred as surface meltwater flowed into crevasses around the basin margin and refilled the subglacial lake. Our observations show that surface meltwater can be trapped and stored at the bed of an ice sheet. Sensible and latent heat released by this trapped meltwater could soften nearby colder basal ice and alter downstream ice dynamics. Heat transport associated with meltwater trapped in subglacial lakes should be considered when predicting how ice sheet behaviour will change in a warming climate.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Willis, Michael J -- Herried, Bradley G -- Bevis, Michael G -- Bell, Robin E -- England -- Nature. 2015 Feb 12;518(7538):223-7. doi: 10.1038/nature14116. Epub 2015 Jan 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Earth and Atmospheric Sciences, Cornell University, Ithaca, New York 14853, USA [2] Department of Geological Sciences, University of North Carolina, Chapel Hill, North Carolina 27599, USA. ; Polar Geospatial Center, University of Minnesota, Saint Paul, Minnesota 55108, USA. ; School of Earth Sciences, Ohio State University, Columbus, Ohio 43210, USA. ; Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York 10964, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25607355" target="_blank"〉PubMed〈/a〉
    Keywords: Altitude ; Freezing ; Global Warming ; Greenland ; Hydrology ; Ice Cover/*chemistry ; Lakes/*chemistry ; Models, Theoretical ; Rivers/chemistry ; Seasons ; Temperature ; Time Factors ; *Water Movements
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  • 104
    Publication Date: 2015-04-17
    Description: Abrupt climate change is a ubiquitous feature of the Late Pleistocene epoch. In particular, the sequence of Dansgaard-Oeschger events (repeated transitions between warm interstadial and cold stadial conditions), as recorded by ice cores in Greenland, are thought to be linked to changes in the mode of overturning circulation in the Atlantic Ocean. Moreover, the observed correspondence between North Atlantic cold events and increased iceberg calving and dispersal from ice sheets surrounding the North Atlantic has inspired many ocean and climate modelling studies that make use of freshwater forcing scenarios to simulate abrupt change across the North Atlantic region and beyond. On the other hand, previous studies identified an apparent lag between North Atlantic cooling events and the appearance of ice-rafted debris over the last glacial cycle, leading to the hypothesis that iceberg discharge may be a consequence of stadial conditions rather than the cause. Here we further establish this relationship and demonstrate a systematic delay between pronounced surface cooling and the arrival of ice-rafted debris at a site southwest of Iceland over the past four glacial cycles, implying that in general icebergs arrived too late to have triggered cooling. Instead we suggest that--on the basis of our comparisons of ice-rafted debris and polar planktonic foraminifera--abrupt transitions to stadial conditions should be considered as a nonlinear response to more gradual cooling across the North Atlantic. Although the freshwater derived from melting icebergs may provide a positive feedback for enhancing and or prolonging stadial conditions, it does not trigger northern stadial events.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Barker, Stephen -- Chen, James -- Gong, Xun -- Jonkers, Lukas -- Knorr, Gregor -- Thornalley, David -- England -- Nature. 2015 Apr 16;520(7547):333-6. doi: 10.1038/nature14330.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Earth and Ocean Sciences, Cardiff University, Cardiff CF10 3AT, UK. ; Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bussestrasse 24, D-27570 Bremerhaven, Germany. ; 1] Department of Geography, University College London, London WC1E 6BT, UK. [2] Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25877202" target="_blank"〉PubMed〈/a〉
    Keywords: Atlantic Ocean ; Climate Change/*history ; *Cold Temperature ; Foraminifera/isolation & purification ; Greenland ; History, Ancient ; *Ice Cover ; Iceland ; Models, Theoretical ; Time Factors ; Water Movements
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  • 105
    Publication Date: 2015-03-06
    Description: In Drosophila, rapid temperature changes are detected at the periphery by dedicated receptors forming a simple sensory map for hot and cold in the brain. However, flies show a host of complex innate and learned responses to temperature, indicating that they are able to extract a range of information from this simple input. Here we define the anatomical and physiological repertoire for temperature representation in the Drosophila brain. First, we use a photolabelling strategy to trace the connections that relay peripheral thermosensory information to higher brain centres, and show that they largely converge onto three target regions: the mushroom body, the lateral horn (both of which are well known centres for sensory processing) and the posterior lateral protocerebrum, a region we now define as a major site of thermosensory representation. Next, using in vivo calcium imaging, we describe the thermosensory projection neurons selectively activated by hot or cold stimuli. Fast-adapting neurons display transient ON and OFF responses and track rapid temperature shifts remarkably well, while slow-adapting cell responses better reflect the magnitude of simple thermal changes. Unexpectedly, we also find a population of broadly tuned cells that respond to both heating and cooling, and show that they are required for normal behavioural avoidance of both hot and cold in a simple two-choice temperature preference assay. Taken together, our results uncover a coordinated ensemble of neural responses to temperature in the Drosophila brain, demonstrate that a broadly tuned thermal line contributes to rapid avoidance behaviour, and illustrate how stimulus quality, temporal structure, and intensity can be extracted from a simple glomerular map at a single synaptic station.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4554763/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4554763/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Frank, Dominic D -- Jouandet, Genevieve C -- Kearney, Patrick J -- Macpherson, Lindsey J -- Gallio, Marco -- 1R01NS086859-01/NS/NINDS NIH HHS/ -- 2T32MH067564/MH/NIMH NIH HHS/ -- R01 NS076774/NS/NINDS NIH HHS/ -- R01 NS086859/NS/NINDS NIH HHS/ -- T32 MH067564/MH/NIMH NIH HHS/ -- England -- Nature. 2015 Mar 19;519(7543):358-61. doi: 10.1038/nature14284. Epub 2015 Mar 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Neurobiology, Northwestern University, Evanston, Illinois 60208, USA. ; Departments of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25739506" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/anatomy & histology/cytology/*physiology ; Brain Mapping ; Calcium/analysis/metabolism ; Drosophila melanogaster/cytology/*physiology ; Mushroom Bodies/innervation ; *Neural Pathways ; Neurons/metabolism ; Synapses/metabolism ; *Temperature ; Thermoreceptors/metabolism ; Thermosensing/*physiology ; Time Factors
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  • 106
    Publication Date: 2015-03-04
    Description: Evolution of large asexual cell populations underlies approximately 30% of deaths worldwide, including those caused by bacteria, fungi, parasites, and cancer. However, the dynamics underlying these evolutionary processes remain poorly understood because they involve many competing beneficial lineages, most of which never rise above extremely low frequencies in the population. To observe these normally hidden evolutionary dynamics, we constructed a sequencing-based ultra high-resolution lineage tracking system in Saccharomyces cerevisiae that allowed us to monitor the relative frequencies of approximately 500,000 lineages simultaneously. In contrast to some expectations, we found that the spectrum of fitness effects of beneficial mutations is neither exponential nor monotonic. Early adaptation is a predictable consequence of this spectrum and is strikingly reproducible, but the initial small-effect mutations are soon outcompeted by rarer large-effect mutations that result in variability between replicates. These results suggest that early evolutionary dynamics may be deterministic for a period of time before stochastic effects become important.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4426284/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4426284/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Levy, Sasha F -- Blundell, Jamie R -- Venkataram, Sandeep -- Petrov, Dmitri A -- Fisher, Daniel S -- Sherlock, Gavin -- 5-T32-HG-44-17/HG/NHGRI NIH HHS/ -- R01 HG003328/HG/NHGRI NIH HHS/ -- R25 GM067110/GM/NIGMS NIH HHS/ -- T32 HG000044/HG/NHGRI NIH HHS/ -- England -- Nature. 2015 Mar 12;519(7542):181-6. doi: 10.1038/nature14279. Epub 2015 Feb 25.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Genetics, Stanford University, Stanford, California 94305-5120, USA [2] Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794-5252, USA [3] Department of Biochemistry and Cellular Biology, Stony Brook University, Stony Brook, New York 11794-5215, USA. ; 1] Department of Applied Physics, Stanford University, Stanford, California 94305, USA [2] Department of Biology, Stanford University, Stanford, California 94305, USA. ; Department of Biology, Stanford University, Stanford, California 94305, USA. ; Department of Genetics, Stanford University, Stanford, California 94305-5120, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25731169" target="_blank"〉PubMed〈/a〉
    Keywords: *Cell Lineage/genetics ; Cell Tracking/*methods ; DNA Barcoding, Taxonomic/methods ; *Evolution, Molecular ; Genetic Fitness/genetics ; Mutagenesis/genetics ; Mutation Rate ; Saccharomyces cerevisiae/*cytology/genetics ; Time Factors
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  • 107
    Publication Date: 2015-09-01
    Description: Dopamine neurons are thought to facilitate learning by comparing actual and expected reward. Despite two decades of investigation, little is known about how this comparison is made. To determine how dopamine neurons calculate prediction error, we combined optogenetic manipulations with extracellular recordings in the ventral tegmental area while mice engaged in classical conditioning. Here we demonstrate, by manipulating the temporal expectation of reward, that dopamine neurons perform subtraction, a computation that is ideal for reinforcement learning but rarely observed in the brain. Furthermore, selectively exciting and inhibiting neighbouring GABA (gamma-aminobutyric acid) neurons in the ventral tegmental area reveals that these neurons are a source of subtraction: they inhibit dopamine neurons when reward is expected, causally contributing to prediction-error calculations. Finally, bilaterally stimulating ventral tegmental area GABA neurons dramatically reduces anticipatory licking to conditioned odours, consistent with an important role for these neurons in reinforcement learning. Together, our results uncover the arithmetic and local circuitry underlying dopamine prediction errors.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567485/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567485/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Eshel, Neir -- Bukwich, Michael -- Rao, Vinod -- Hemmelder, Vivian -- Tian, Ju -- Uchida, Naoshige -- F30 MH100729/MH/NIMH NIH HHS/ -- F30MH100729/MH/NIMH NIH HHS/ -- R01 MH095953/MH/NIMH NIH HHS/ -- R01 MH101207/MH/NIMH NIH HHS/ -- R01MH095953/MH/NIMH NIH HHS/ -- R01MH101207/MH/NIMH NIH HHS/ -- T32 GM007753/GM/NIGMS NIH HHS/ -- T32GM007753/GM/NIGMS NIH HHS/ -- England -- Nature. 2015 Sep 10;525(7568):243-6. doi: 10.1038/nature14855. Epub 2015 Aug 31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Brain Science, Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26322583" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conditioning, Classical ; Dopamine/*metabolism ; Dopaminergic Neurons/*metabolism ; GABAergic Neurons/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; *Models, Neurological ; Neural Pathways/*physiology ; Odors/analysis ; Optogenetics ; Reinforcement (Psychology) ; Reward ; Time Factors ; Ventral Tegmental Area/*cytology/*physiology ; gamma-Aminobutyric Acid/metabolism
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  • 108
    Publication Date: 2015-11-27
    Description: Non-invasive imaging deep into organs at microscopic scales remains an open quest in biomedical imaging. Although optical microscopy is still limited to surface imaging owing to optical wave diffusion and fast decorrelation in tissue, revolutionary approaches such as fluorescence photo-activated localization microscopy led to a striking increase in resolution by more than an order of magnitude in the last decade. In contrast with optics, ultrasonic waves propagate deep into organs without losing their coherence and are much less affected by in vivo decorrelation processes. However, their resolution is impeded by the fundamental limits of diffraction, which impose a long-standing trade-off between resolution and penetration. This limits clinical and preclinical ultrasound imaging to a sub-millimetre scale. Here we demonstrate in vivo that ultrasound imaging at ultrafast frame rates (more than 500 frames per second) provides an analogue to optical localization microscopy by capturing the transient signal decorrelation of contrast agents--inert gas microbubbles. Ultrafast ultrasound localization microscopy allowed both non-invasive sub-wavelength structural imaging and haemodynamic quantification of rodent cerebral microvessels (less than ten micrometres in diameter) more than ten millimetres below the tissue surface, leading to transcranial whole-brain imaging within short acquisition times (tens of seconds). After intravenous injection, single echoes from individual microbubbles were detected through ultrafast imaging. Their localization, not limited by diffraction, was accumulated over 75,000 images, yielding 1,000,000 events per coronal plane and statistically independent pixels of ten micrometres in size. Precise temporal tracking of microbubble positions allowed us to extract accurately in-plane velocities of the blood flow with a large dynamic range (from one millimetre per second to several centimetres per second). These results pave the way for deep non-invasive microscopy in animals and humans using ultrasound. We anticipate that ultrafast ultrasound localization microscopy may become an invaluable tool for the fundamental understanding and diagnostics of various disease processes that modify the microvascular blood flow, such as cancer, stroke and arteriosclerosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Errico, Claudia -- Pierre, Juliette -- Pezet, Sophie -- Desailly, Yann -- Lenkei, Zsolt -- Couture, Olivier -- Tanter, Mickael -- England -- Nature. 2015 Nov 26;527(7579):499-502. doi: 10.1038/nature16066.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉INSERM, Institut Langevin, 1 rue Jussieu, 75005 Paris, France. ; Institut Langevin, ESPCI-ParisTech, PSL Research University, 1 rue Jussieu, 75005 Paris, France. ; CNRS UMR 7587, 1 rue Jussieu, 75005 Paris, France. ; CNRS, UMR 8249, 10 rue Vauquelin, 75005 Paris, France. ; Brain Plasticity Unit, ESPCI-ParisTech, PSL Research University, 10 rue Vauquelin, 75005 Paris, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26607546" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/*blood supply/cytology ; Contrast Media ; Male ; Microbubbles ; Microscopy/*methods ; *Microvessels ; Molecular Imaging/*methods ; Optics and Photonics ; Rats ; Rats, Sprague-Dawley ; Time Factors ; Ultrasonics/*methods
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  • 109
    Publication Date: 2015-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Michel-Kerjan, Erwann -- England -- Nature. 2015 Jan 22;517(7535):413. doi: 10.1038/517413a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25612017" target="_blank"〉PubMed〈/a〉
    Keywords: Decision Making ; Disaster Planning/*methods ; International Cooperation ; Leadership ; Paris ; Research Report ; Risk Assessment/methods ; Risk Management/*methods ; Terrorism/prevention & control ; Time Factors ; Uncertainty
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  • 110
    Publication Date: 2015-02-13
    Description: Grid cells are neurons with periodic spatial receptive fields (grids) that tile two-dimensional space in a hexagonal pattern. To provide useful information about location, grids must be stably anchored to an external reference frame. The mechanisms underlying this anchoring process have remained elusive. Here we show in differently sized familiar square enclosures that the axes of the grids are offset from the walls by an angle that minimizes symmetry with the borders of the environment. This rotational offset is invariably accompanied by an elliptic distortion of the grid pattern. Reversing the ellipticity analytically by a shearing transformation removes the angular offset. This, together with the near-absence of rotation in novel environments, suggests that the rotation emerges through non-coaxial strain as a function of experience. The systematic relationship between rotation and distortion of the grid pattern points to shear forces arising from anchoring to specific geometric reference points as key elements of the mechanism for alignment of grid patterns to the external world.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stensola, Tor -- Stensola, Hanne -- Moser, May-Britt -- Moser, Edvard I -- England -- Nature. 2015 Feb 12;518(7538):207-12. doi: 10.1038/nature14151.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology, Olav Kyrres gate 9, 7491 Trondheim, Norway.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25673414" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Brain Mapping ; Entorhinal Cortex/*cytology/physiology ; *Environment ; Male ; Models, Neurological ; Neurons/cytology/*physiology ; Orientation/*physiology ; Pattern Recognition, Visual/*physiology ; Rats ; Rats, Long-Evans ; Rotation ; Space Perception/*physiology ; Time Factors
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  • 111
    Publication Date: 2015-08-27
    Description: Most cancers in humans are large, measuring centimetres in diameter, and composed of many billions of cells. An equivalent mass of normal cells would be highly heterogeneous as a result of the mutations that occur during each cell division. What is remarkable about cancers is that virtually every neoplastic cell within a large tumour often contains the same core set of genetic alterations, with heterogeneity confined to mutations that emerge late during tumour growth. How such alterations expand within the spatially constrained three-dimensional architecture of a tumour, and come to dominate a large, pre-existing lesion, has been unclear. Here we describe a model for tumour evolution that shows how short-range dispersal and cell turnover can account for rapid cell mixing inside the tumour. We show that even a small selective advantage of a single cell within a large tumour allows the descendants of that cell to replace the precursor mass in a clinically relevant time frame. We also demonstrate that the same mechanisms can be responsible for the rapid onset of resistance to chemotherapy. Our model not only provides insights into spatial and temporal aspects of tumour growth, but also suggests that targeting short-range cellular migratory activity could have marked effects on tumour growth rates.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Waclaw, Bartlomiej -- Bozic, Ivana -- Pittman, Meredith E -- Hruban, Ralph H -- Vogelstein, Bert -- Nowak, Martin A -- CA43460/CA/NCI NIH HHS/ -- CA62924/CA/NCI NIH HHS/ -- England -- Nature. 2015 Sep 10;525(7568):261-4. doi: 10.1038/nature14971. Epub 2015 Aug 26.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Physics and Astronomy, University of Edinburgh, JCMB, Peter Guthrie Tait Road, Edinburgh EH9 3FD, UK. ; Program for Evolutionary Dynamics, Harvard University, One Brattle Square, Cambridge, Massachusetts 02138, USA. ; Department of Mathematics, Harvard University, One Oxford Street, Cambridge, Massachusetts 02138, USA. ; The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, 401 North Broadway, Weinberg 2242, Baltimore, Maryland 21231, USA. ; Ludwig Center and Howard Hughes Medical Institute, Johns Hopkins Kimmel Cancer Center, 1650 Orleans Street, Baltimore, Maryland 21287, USA. ; Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26308893" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Division ; *Cell Movement ; Drug Resistance, Neoplasm/genetics ; Evolution, Molecular ; Genetic Variation/*genetics ; Humans ; *Models, Biological ; Mutation/genetics ; Neoplasms/*genetics/metabolism/*pathology ; *Selection, Genetic ; Time Factors
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  • 112
    Publication Date: 2015-08-08
    Description: The source of new hepatocytes in the uninjured liver has remained an open question. By lineage tracing using the Wnt-responsive gene Axin2 in mice, we identify a population of proliferating and self-renewing cells adjacent to the central vein in the liver lobule. These pericentral cells express the early liver progenitor marker Tbx3, are diploid, and thereby differ from mature hepatocytes, which are mostly polyploid. The descendants of pericentral cells differentiate into Tbx3-negative, polyploid hepatocytes, and can replace all hepatocytes along the liver lobule during homeostatic renewal. Adjacent central vein endothelial cells provide Wnt signals that maintain the pericentral cells, thereby constituting the niche. Thus, we identify a cell population in the liver that subserves homeostatic hepatocyte renewal, characterize its anatomical niche, and identify molecular signals that regulate its activity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589224/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589224/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, Bruce -- Zhao, Ludan -- Fish, Matt -- Logan, Catriona Y -- Nusse, Roel -- F32DK091005/DK/NIDDK NIH HHS/ -- K08 DK101603/DK/NIDDK NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Aug 13;524(7564):180-5. doi: 10.1038/nature14863. Epub 2015 Aug 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Department of Developmental Biology, Howard Hughes Medical Institute, Stanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, California 94305, USA [2] Department of Medicine and Liver Center, University of California San Francisco, San Francisco, California 94143, USA. ; Department of Developmental Biology, Howard Hughes Medical Institute, Stanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26245375" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Axin Protein/*metabolism ; Biomarkers/metabolism ; Cell Lineage ; Cell Proliferation ; Clone Cells/cytology/metabolism ; *Diploidy ; Endothelial Cells/metabolism ; Female ; Hepatocytes/*cytology/*metabolism ; *Homeostasis ; Liver/blood supply/*cytology ; Male ; Mice ; Polyploidy ; Regeneration ; Staining and Labeling ; Stem Cell Niche/physiology ; Stem Cells/cytology/metabolism ; T-Box Domain Proteins/deficiency/metabolism ; Time Factors ; Veins/cytology/metabolism ; Wnt Signaling Pathway
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 113
    Publication Date: 2015-05-02
    Description: When Staphylococcus aureus undergoes cytokinesis, it builds a septum, generating two hemispherical daughters whose cell walls are only connected via a narrow peripheral ring. We found that resolution of this ring occurred within milliseconds ("popping"), without detectable changes in cell volume. The likelihood of popping depended on cell-wall stress, and the separating cells split open asymmetrically, leaving the daughters connected by a hinge. An elastostatic model of the wall indicated high circumferential stress in the peripheral ring before popping. Last, we observed small perforations in the peripheral ring that are likely initial points of mechanical failure. Thus, the ultrafast daughter cell separation in S. aureus appears to be driven by accumulation of stress in the peripheral ring and exhibits hallmarks of mechanical crack propagation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhou, Xiaoxue -- Halladin, David K -- Rojas, Enrique R -- Koslover, Elena F -- Lee, Timothy K -- Huang, Kerwyn Casey -- Theriot, Julie A -- 1S10OD01227601/OD/NIH HHS/ -- DP2OD006466/OD/NIH HHS/ -- P50-GM107615/GM/NIGMS NIH HHS/ -- R01 AI036929/AI/NIAID NIH HHS/ -- R01-AI36929/AI/NIAID NIH HHS/ -- R37 AI036929/AI/NIAID NIH HHS/ -- T32 GM007276/GM/NIGMS NIH HHS/ -- T32-GM007276/GM/NIGMS NIH HHS/ -- U54-GM072970/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2015 May 1;348(6234):574-8. doi: 10.1126/science.aaa1511.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Stanford University, Stanford, CA 94305, USA. Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. Howard Hughes Medical Institute (HHMI), Stanford University School of Medicine, Stanford, CA 94305, USA. ; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. Howard Hughes Medical Institute (HHMI), Stanford University School of Medicine, Stanford, CA 94305, USA. Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. ; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. Howard Hughes Medical Institute (HHMI), Stanford University School of Medicine, Stanford, CA 94305, USA. Department of Bioengineering, Stanford University, Stanford, CA 94305, USA. ; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. Howard Hughes Medical Institute (HHMI), Stanford University School of Medicine, Stanford, CA 94305, USA. ; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA. ; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. Department of Bioengineering, Stanford University, Stanford, CA 94305, USA. ; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. Howard Hughes Medical Institute (HHMI), Stanford University School of Medicine, Stanford, CA 94305, USA. Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. theriot@stanford.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25931560" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Wall/physiology/ultrastructure ; *Cytokinesis ; Microscopy, Electron, Scanning ; Microscopy, Video ; Staphylococcus aureus/cytology/*physiology/ultrastructure ; Stress, Mechanical ; Time Factors
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  • 114
    Publication Date: 2015-05-09
    Description: Immunosuppression after measles is known to predispose people to opportunistic infections for a period of several weeks to months. Using population-level data, we show that measles has a more prolonged effect on host resistance, extending over 2 to 3 years. We find that nonmeasles infectious disease mortality in high-income countries is tightly coupled to measles incidence at this lag, in both the pre- and post-vaccine eras. We conclude that long-term immunologic sequelae of measles drive interannual fluctuations in nonmeasles deaths. This is consistent with recent experimental work that attributes the immunosuppressive effects of measles to depletion of B and T lymphocytes. Our data provide an explanation for the long-term benefits of measles vaccination in preventing all-cause infectious disease. By preventing measles-associated immune memory loss, vaccination protects polymicrobial herd immunity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mina, Michael J -- Metcalf, C Jessica E -- de Swart, Rik L -- Osterhaus, A D M E -- Grenfell, Bryan T -- T32 GM008169/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2015 May 8;348(6235):694-9. doi: 10.1126/science.aaa3662. Epub 2015 May 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA. Medical Scientist Training Program, School of Medicine, Emory University, Atlanta, GA, USA. michael.j.mina@gmail.com. ; Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA. Fogarty International Center, National Institutes of Health, Bethesda, MD, USA. ; Department of Viroscience, Erasmus University Medical Center, Rotterdam, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25954009" target="_blank"〉PubMed〈/a〉
    Keywords: B-Lymphocytes/immunology ; Child ; *Child Mortality ; Child, Preschool ; England/epidemiology ; Female ; Humans ; Immunologic Memory ; *Immunomodulation ; Incidence ; Lymphocyte Depletion ; Male ; Measles/*epidemiology/*immunology/prevention & control ; Measles Vaccine/administration & dosage/*immunology ; Opportunistic Infections/immunology/*mortality/*prevention & control ; T-Lymphocytes/immunology ; Time Factors ; United States/epidemiology ; Vaccination ; Wales/epidemiology
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 115
    Publication Date: 2015-11-28
    Description: Protein domains can fold into stable tertiary structures while they are synthesized on the ribosome. We used a high-performance, reconstituted in vitro translation system to investigate the folding of a small five-helix protein domain-the N-terminal domain of Escherichia coli N5-glutamine methyltransferase HemK-in real time. Our observations show that cotranslational folding of the protein, which folds autonomously and rapidly in solution, proceeds through a compact, non-native conformation that forms within the peptide tunnel of the ribosome. The compact state rearranges into a native-like structure immediately after the full domain sequence has emerged from the ribosome. Both folding transitions are rate-limited by translation, allowing for quasi-equilibrium sampling of the conformational space restricted by the ribosome. Cotranslational folding may be typical of small, intrinsically rapidly folding protein domains.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Holtkamp, Wolf -- Kokic, Goran -- Jager, Marcus -- Mittelstaet, Joerg -- Komar, Anton A -- Rodnina, Marina V -- New York, N.Y. -- Science. 2015 Nov 27;350(6264):1104-7. doi: 10.1126/science.aad0344.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physical Biochemistry, Max Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany. ; Center for Gene Regulation in Health and Disease and Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA. ; Department of Physical Biochemistry, Max Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany. rodnina@mpibpc.mpg.de.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26612953" target="_blank"〉PubMed〈/a〉
    Keywords: Escherichia coli Proteins/biosynthesis/chemistry ; Fluorescence Resonance Energy Transfer/*methods ; Peptides/chemistry ; *Protein Biosynthesis ; *Protein Folding ; Protein Methyltransferases/biosynthesis/chemistry ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Proteolysis ; Ribosomes/chemistry/*metabolism ; Time Factors
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  • 116
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2015-10-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cohen, Jeremiah Y -- New York, N.Y. -- Science. 2015 Oct 2;350(6256):47. doi: 10.1126/science.aad3003.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Solomon H. Snyder Department of Neuroscience, Brain Science Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. jeremiah.cohen@jhmi.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26430113" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/*physiology ; Dopamine/*metabolism ; Dopaminergic Neurons/*metabolism ; Electric Stimulation ; Humans ; Mice ; Neurophysiology/trends ; *Reward ; Serotonin/*metabolism ; Signal Transduction ; Time Factors ; Ventral Tegmental Area/*cytology
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  • 117
    Publication Date: 2015-04-11
    Description: Mountain gorillas are an endangered great ape subspecies and a prominent focus for conservation, yet we know little about their genomic diversity and evolutionary past. We sequenced whole genomes from multiple wild individuals and compared the genomes of all four Gorilla subspecies. We found that the two eastern subspecies have experienced a prolonged population decline over the past 100,000 years, resulting in very low genetic diversity and an increased overall burden of deleterious variation. A further recent decline in the mountain gorilla population has led to extensive inbreeding, such that individuals are typically homozygous at 34% of their sequence, leading to the purging of severely deleterious recessive mutations from the population. We discuss the causes of their decline and the consequences for their future survival.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4668944/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4668944/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Xue, Yali -- Prado-Martinez, Javier -- Sudmant, Peter H -- Narasimhan, Vagheesh -- Ayub, Qasim -- Szpak, Michal -- Frandsen, Peter -- Chen, Yuan -- Yngvadottir, Bryndis -- Cooper, David N -- de Manuel, Marc -- Hernandez-Rodriguez, Jessica -- Lobon, Irene -- Siegismund, Hans R -- Pagani, Luca -- Quail, Michael A -- Hvilsom, Christina -- Mudakikwa, Antoine -- Eichler, Evan E -- Cranfield, Michael R -- Marques-Bonet, Tomas -- Tyler-Smith, Chris -- Scally, Aylwyn -- 098051/Wellcome Trust/United Kingdom -- 099769/Z/12/Z/Wellcome Trust/United Kingdom -- 260372/European Research Council/International -- HG002385/HG/NHGRI NIH HHS/ -- R01 HG002385/HG/NHGRI NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2015 Apr 10;348(6231):242-5. doi: 10.1126/science.aaa3952. Epub 2015 Apr 9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK. ; Institut de Biologia Evolutiva (CSIC/UPF), Parque de Investigacion Biomedica de Barcelona (PRBB), Barcelona, Catalonia 08003, Spain. ; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. ; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK. Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK. ; Department of Biology, University of Copenhagen, DK-2200 Copenhagen N, Denmark. ; Institute of Medical Genetics, Cardiff University, Cardiff CF14 4XN, UK. ; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK. Department of Biological, Geological and Environmental Sciences, University of Bologna, 40134 Bologna, Italy. ; Research and Conservation, Copenhagen Zoo, DK-2000 Frederiksberg, Denmark. ; Rwanda Development Board, KG 9 Avenue, Kigali, Rwanda. ; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Howard Hughes Medical Institute, Seattle, WA 91895, USA. ; Gorilla Doctors, Karen C. Drayer Wildlife Health Center, University of California, Davis, CA 95616, USA. ; Institut de Biologia Evolutiva (CSIC/UPF), Parque de Investigacion Biomedica de Barcelona (PRBB), Barcelona, Catalonia 08003, Spain. Centro Nacional de Analisis Genomico (Parc Cientific de Barcelona), Baldiri Reixac 4, 08028 Barcelona, Spain. ; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK. cts@sanger.ac.uk aos21@cam.ac.uk. ; Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK. cts@sanger.ac.uk aos21@cam.ac.uk.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25859046" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological ; Animals ; Biological Evolution ; DNA Copy Number Variations ; Democratic Republic of the Congo ; Endangered Species ; Female ; *Genetic Variation ; *Genome ; Gorilla gorilla/classification/*genetics/physiology ; Homozygote ; *Inbreeding ; Linkage Disequilibrium ; Male ; Mutation ; Population Dynamics ; Rwanda ; Selection, Genetic ; Sequence Analysis, DNA ; Species Specificity ; Time Factors
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  • 118
    Publication Date: 2015-01-30
    Description: Estimating and accounting for twentieth-century global mean sea level (GMSL) rise is critical to characterizing current and future human-induced sea-level change. Several previous analyses of tide gauge records--employing different methods to accommodate the spatial sparsity and temporal incompleteness of the data and to constrain the geometry of long-term sea-level change--have concluded that GMSL rose over the twentieth century at a mean rate of 1.6 to 1.9 millimetres per year. Efforts to account for this rate by summing estimates of individual contributions from glacier and ice-sheet mass loss, ocean thermal expansion, and changes in land water storage fall significantly short in the period before 1990. The failure to close the budget of GMSL during this period has led to suggestions that several contributions may have been systematically underestimated. However, the extent to which the limitations of tide gauge analyses have affected estimates of the GMSL rate of change is unclear. Here we revisit estimates of twentieth-century GMSL rise using probabilistic techniques and find a rate of GMSL rise from 1901 to 1990 of 1.2 +/- 0.2 millimetres per year (90% confidence interval). Based on individual contributions tabulated in the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, this estimate closes the twentieth-century sea-level budget. Our analysis, which combines tide gauge records with physics-based and model-derived geometries of the various contributing signals, also indicates that GMSL rose at a rate of 3.0 +/- 0.7 millimetres per year between 1993 and 2010, consistent with prior estimates from tide gauge records.The increase in rate relative to the 1901-90 trend is accordingly larger than previously thought; this revision may affect some projections of future sea-level rise.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hay, Carling C -- Morrow, Eric -- Kopp, Robert E -- Mitrovica, Jerry X -- England -- Nature. 2015 Jan 22;517(7535):481-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25629092" target="_blank"〉PubMed〈/a〉
    Keywords: Bias (Epidemiology) ; Climate Change/statistics & numerical data ; History, 20th Century ; History, 21st Century ; Human Activities ; Oceans and Seas ; Probability ; Seawater/*analysis ; Tidal Waves ; Time Factors ; Uncertainty
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  • 119
    facet.materialart.
    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2015-06-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Landskron, Kai -- England -- Nature. 2015 Jun 11;522(7555):247.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26065303" target="_blank"〉PubMed〈/a〉
    Keywords: Crowdsourcing/*economics/*methods ; Financing, Organized/economics ; Laboratories/*economics/manpower ; Nanotechnology/economics ; Research/*economics ; Research Personnel/*economics ; Research Support as Topic/economics/*methods ; Time Factors ; United States
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  • 120
    Publication Date: 2015-09-01
    Description: In all domains of life, DNA synthesis occurs bidirectionally from replication origins. Despite variable rates of replication fork progression, fork convergence often occurs at specific sites. Escherichia coli sets a 'replication fork trap' that allows the first arriving fork to enter but not to leave the terminus region. The trap is set by oppositely oriented Tus-bound Ter sites that block forks on approach from only one direction. However, the efficiency of fork blockage by Tus-Ter does not exceed 50% in vivo despite its apparent ability to almost permanently arrest replication forks in vitro. Here we use data from single-molecule DNA replication assays and structural studies to show that both polarity and fork-arrest efficiency are determined by a competition between rates of Tus displacement and rearrangement of Tus-Ter interactions that leads to blockage of slower moving replisomes by two distinct mechanisms. To our knowledge this is the first example where intrinsic differences in rates of individual replisomes have different biological outcomes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Elshenawy, Mohamed M -- Jergic, Slobodan -- Xu, Zhi-Qiang -- Sobhy, Mohamed A -- Takahashi, Masateru -- Oakley, Aaron J -- Dixon, Nicholas E -- Hamdan, Samir M -- England -- Nature. 2015 Sep 17;525(7569):394-8. doi: 10.1038/nature14866. Epub 2015 Aug 31.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia. ; Centre for Medical &Molecular Bioscience, Illawarra Health &Medical Research Institute and University of Wollongong, New South Wales 2522, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26322585" target="_blank"〉PubMed〈/a〉
    Keywords: Base Sequence ; Binding, Competitive ; Chromosomes, Bacterial/genetics/metabolism ; Crystallography, X-Ray ; *DNA Replication ; DNA-Directed DNA Polymerase/chemistry/*metabolism ; Escherichia coli/*genetics/metabolism ; Escherichia coli Proteins/chemistry/*metabolism ; Kinetics ; Models, Biological ; Models, Molecular ; Movement ; Multienzyme Complexes/chemistry/*metabolism ; Protein Conformation ; Regulatory Sequences, Nucleic Acid/*genetics ; Surface Plasmon Resonance ; Time Factors
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  • 121
    Publication Date: 2015-08-13
    Description: Tropical mountains are hot spots of biodiversity and endemism, but the evolutionary origins of their unique biotas are poorly understood. In varying degrees, local and regional extinction, long-distance colonization, and local recruitment may all contribute to the exceptional character of these communities. Also, it is debated whether mountain endemics mostly originate from local lowland taxa, or from lineages that reach the mountain by long-range dispersal from cool localities elsewhere. Here we investigate the evolutionary routes to endemism by sampling an entire tropical mountain biota on the 4,095-metre-high Mount Kinabalu in Sabah, East Malaysia. We discover that most of its unique biodiversity is younger than the mountain itself (6 million years), and comprises a mix of immigrant pre-adapted lineages and descendants from local lowland ancestors, although substantial shifts from lower to higher vegetation zones in this latter group were rare. These insights could improve forecasts of the likelihood of extinction and 'evolutionary rescue' in montane biodiversity hot spots under climate change scenarios.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Merckx, Vincent S F T -- Hendriks, Kasper P -- Beentjes, Kevin K -- Mennes, Constantijn B -- Becking, Leontine E -- Peijnenburg, Katja T C A -- Afendy, Aqilah -- Arumugam, Nivaarani -- de Boer, Hugo -- Biun, Alim -- Buang, Matsain M -- Chen, Ping-Ping -- Chung, Arthur Y C -- Dow, Rory -- Feijen, Frida A A -- Feijen, Hans -- Feijen-van Soest, Cobi -- Geml, Jozsef -- Geurts, Rene -- Gravendeel, Barbara -- Hovenkamp, Peter -- Imbun, Paul -- Ipor, Isa -- Janssens, Steven B -- Jocque, Merlijn -- Kappes, Heike -- Khoo, Eyen -- Koomen, Peter -- Lens, Frederic -- Majapun, Richard J -- Morgado, Luis N -- Neupane, Suman -- Nieser, Nico -- Pereira, Joan T -- Rahman, Homathevi -- Sabran, Suzana -- Sawang, Anati -- Schwallier, Rachel M -- Shim, Phyau-Soon -- Smit, Harry -- Sol, Nicolien -- Spait, Maipul -- Stech, Michael -- Stokvis, Frank -- Sugau, John B -- Suleiman, Monica -- Sumail, Sukaibin -- Thomas, Daniel C -- van Tol, Jan -- Tuh, Fred Y Y -- Yahya, Bakhtiar E -- Nais, Jamili -- Repin, Rimi -- Lakim, Maklarin -- Schilthuizen, Menno -- England -- Nature. 2015 Aug 20;524(7565):347-50. doi: 10.1038/nature14949. Epub 2015 Aug 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Naturalis Biodiversity Center, Darwinweg 2, 2333 CR Leiden, The Netherlands. ; Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands. ; Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborg 7, 9747 AG Groningen, The Netherlands. ; Wageningen University &Research centre, Marine Animal Ecology Group, PO Box 338, 6700 AH Wageningen, The Netherlands. ; Department of Environmental Science, Policy, &Management, University of California Berkeley, 130 Mulford Hall #3114, Berkeley, California 94720, USA. ; Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands. ; Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, Malaysia. ; Faculty of Earth Science, Universiti Malaysia Kelantan, Jeli Campus, Locked bag No.100, 17600 Jeli, Kelantan Darul Naim, Malaysia. ; Department of Organismal Biology, Uppsala University, Norbyvagen 18D, 75236 Uppsala, Sweden. ; Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, NO-0318 Oslo, Norway. ; Sabah Parks, Lot 45 &46, Level 1-5, Blok H, KK Times Square, 88806 Kota Kinabalu, Sabah, Malaysia. ; Forest Research Centre, Sabah Forestry Department, P.O. Box 1407, 90175 Sandakan, Sabah, Malaysia. ; Wageningen University, Department of Plant Sciences, Laboratory of Molecular Biology, 6700AP Wageningen, The Netherlands. ; University of Applied Sciences Leiden, Zernikedreef 11, 2333 CK Leiden, The Netherlands. ; Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia. ; Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium. ; Royal Belgian Institute of Natural Sciences, Aquatic and Terrestrial Ecology, Vautierstraat 29, 1000 Brussels, Belgium. ; Rutgers, The State University of New Jersey, Department of Biological Sciences, 195 University Avenue, Boyden Hall, Newark, New Jersey 07102, USA. ; Zoological Institute, University of Cologne, Zulpicher Strasse 47b, D-50674 Cologne, Germany. ; Natuurmuseum Fryslan, Schoenmakersperk 2, 8911 EM Leeuwarden, The Netherlands. ; EEB Department, University of Connecticut, 75 N. Eagleville Road, Storrs, Connecticut 06269-3043, USA. ; School of Biological Sciences, University of Hong Kong, Pok Fu Lam Road, Hong Kong, China. ; Singapore Botanic Gardens, 1 Cluny Road, 259569 Singapore, Republic of Singapore.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26266979" target="_blank"〉PubMed〈/a〉
    Keywords: *Altitude ; Animal Migration ; Animals ; *Biota ; Climate Change ; DNA Barcoding, Taxonomic ; Extinction, Biological ; Introduced Species/*statistics & numerical data ; Malaysia ; Molecular Sequence Data ; *Phylogeny ; *Phylogeography ; Plants/classification/genetics ; Time Factors ; *Tropical Climate
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  • 122
    Publication Date: 2015-12-23
    Description: The global occurrence in water resources of organic micropollutants, such as pesticides and pharmaceuticals, has raised concerns about potential negative effects on aquatic ecosystems and human health. Activated carbons are the most widespread adsorbent materials used to remove organic pollutants from water but they have several deficiencies, including slow pollutant uptake (of the order of hours) and poor removal of many relatively hydrophilic micropollutants. Furthermore, regenerating spent activated carbon is energy intensive (requiring heating to 500-900 degrees Celsius) and does not fully restore performance. Insoluble polymers of beta-cyclodextrin, an inexpensive, sustainably produced macrocycle of glucose, are likewise of interest for removing micropollutants from water by means of adsorption. beta-cyclodextrin is known to encapsulate pollutants to form well-defined host-guest complexes, but until now cross-linked beta-cyclodextrin polymers have had low surface areas and poor removal performance compared to conventional activated carbons. Here we crosslink beta-cyclodextrin with rigid aromatic groups, providing a high-surface-area, mesoporous polymer of beta-cyclodextrin. It rapidly sequesters a variety of organic micropollutants with adsorption rate constants 15 to 200 times greater than those of activated carbons and non-porous beta-cyclodextrin adsorbent materials. In addition, the polymer can be regenerated several times using a mild washing procedure with no loss in performance. Finally, the polymer outperformed a leading activated carbon for the rapid removal of a complex mixture of organic micropollutants at environmentally relevant concentrations. These findings demonstrate the promise of porous cyclodextrin-based polymers for rapid, flow-through water treatment.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Alsbaiee, Alaaeddin -- Smith, Brian J -- Xiao, Leilei -- Ling, Yuhan -- Helbling, Damian E -- Dichtel, William R -- England -- Nature. 2016 Jan 14;529(7585):190-4. doi: 10.1038/nature16185. Epub 2015 Dec 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and Chemical Biology, Cornell University, Baker Laboratory, Ithaca, New York 14853, USA. ; School of Civil and Environmental Engineering, Cornell University, Ithaca, New York 14853, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26689365" target="_blank"〉PubMed〈/a〉
    Keywords: Adsorption ; Benzhydryl Compounds/chemistry/isolation & purification ; Cellulose/chemical synthesis/*chemistry ; Charcoal/chemistry ; Cyclodextrins/chemical synthesis/*chemistry ; Phenols/chemistry/isolation & purification ; Porosity ; Recycling/economics/methods ; Temperature ; Time Factors ; Waste Disposal, Fluid/economics/methods ; Water/*chemistry ; Water Pollutants, Chemical/chemistry/*isolation & purification ; Water Purification/economics/*methods
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 123
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    Nature Publishing Group (NPG)
    Publication Date: 2015-03-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2015 Mar 26;519(7544):S75. doi: 10.1038/519S75a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25806700" target="_blank"〉PubMed〈/a〉
    Keywords: *Bibliometrics ; *Databases, Factual ; Efficiency ; Internationality ; *Periodicals as Topic/standards/statistics & numerical data ; Publishing/*statistics & numerical data ; Research/standards/*statistics & numerical data ; Research Personnel/standards/*statistics & numerical data ; Time Factors
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  • 124
    Publication Date: 2015-04-02
    Description: In the context of most induced pluripotent stem (iPS) cell reprogramming methods, heterogeneous populations of non-productive and staggered productive intermediates arise at different reprogramming time points. Despite recent reports claiming substantially increased reprogramming efficiencies using genetically modified donor cells, prospectively isolating distinct reprogramming intermediates remains an important goal to decipher reprogramming mechanisms. Previous attempts to identify surface markers of intermediate cell populations were based on the assumption that, during reprogramming, cells progressively lose donor cell identity and gradually acquire iPS cell properties. Here we report that iPS cell and epithelial markers, such as SSEA1 and EpCAM, respectively, are not predictive of reprogramming during early phases. Instead, in a systematic functional surface marker screen, we find that early reprogramming-prone cells express a unique set of surface markers, including CD73, CD49d and CD200, that are absent in both fibroblasts and iPS cells. Single-cell mass cytometry and prospective isolation show that these distinct intermediates are transient and bridge the gap between donor cell silencing and pluripotency marker acquisition during the early, presumably stochastic, reprogramming phase. Expression profiling reveals early upregulation of the transcriptional regulators Nr0b1 and Etv5 in this reprogramming state, preceding activation of key pluripotency regulators such as Rex1 (also known as Zfp42), Dppa2, Nanog and Sox2. Both factors are required for the generation of the early intermediate state and fully reprogrammed iPS cells, and thus represent some of the earliest known regulators of iPS cell induction. Our study deconvolutes the first steps in a hierarchical series of events that lead to pluripotency acquisition.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441548/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441548/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lujan, Ernesto -- Zunder, Eli R -- Ng, Yi Han -- Goronzy, Isabel N -- Nolan, Garry P -- Wernig, Marius -- F32 GM093508-01/GM/NIGMS NIH HHS/ -- RC4 NS073015/NS/NINDS NIH HHS/ -- England -- Nature. 2015 May 21;521(7552):352-6. doi: 10.1038/nature14274. Epub 2015 Apr 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, California 94305, USA [2] Department of Genetics, Stanford University, Stanford, California 94305, USA [3] Department of Pathology, Stanford University, Stanford, California 94305, USA. ; Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, California 94305, USA. ; 1] Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, California 94305, USA [2] Department of Pathology, Stanford University, Stanford, California 94305, USA [3] Department of Microbiology and Immunology, Stanford University, Stanford, California 94305, USA. ; 1] Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, California 94305, USA [2] Department of Pathology, Stanford University, Stanford, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25830878" target="_blank"〉PubMed〈/a〉
    Keywords: 5'-Nucleotidase/metabolism ; Animals ; Antigens, CD/metabolism ; Antigens, CD15/metabolism ; Antigens, Neoplasm/metabolism ; Biomarkers/analysis/metabolism ; Cell Adhesion Molecules/metabolism ; *Cell Separation ; Cellular Reprogramming/*physiology ; DAX-1 Orphan Nuclear Receptor/metabolism ; DNA-Binding Proteins/metabolism ; Epithelial Cells/metabolism ; Fibroblasts/cytology/metabolism ; *Flow Cytometry ; Gene Expression Profiling ; Homeodomain Proteins/metabolism ; Induced Pluripotent Stem Cells/*cytology/*metabolism ; Integrin alpha4/metabolism ; Mice ; Nuclear Proteins/metabolism ; SOXB1 Transcription Factors/metabolism ; Time Factors ; Transcription Factors/analysis/*metabolism
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  • 125
    Publication Date: 2015-12-04
    Description: Tuberculosis is a major source of global mortality caused by infection, partly because of a tremendous ongoing burden of undiagnosed disease. Improved diagnostic technology may play an increasingly crucial part in global efforts to end tuberculosis, but the ability of diagnostic tests to curb tuberculosis transmission is dependent on multiple factors, including the time taken by a patient to seek health care, the patient's symptoms, and the patterns of transmission before diagnosis. Novel diagnostic assays for tuberculosis have conventionally been evaluated on the basis of characteristics such as sensitivity and specificity, using assumptions that probably overestimate the impact of diagnostic tests on transmission. We argue for a shift in focus to the evaluation of such tests' incremental value, defining outcomes that reflect each test's purpose (for example, transmissions averted) and comparing systems with the test against those without, in terms of those outcomes. Incremental value can also be measured in units of outcome per incremental unit of resource (for example, money or human capacity). Using a novel, simplified model of tuberculosis transmission that addresses some of the limitations of earlier tuberculosis diagnostic models, we demonstrate that the incremental value of any novel test depends not just on its accuracy, but also on elements such as patient behaviour, tuberculosis natural history and health systems. By integrating these factors into a single unified framework, we advance an approach to the evaluation of new diagnostic tests for tuberculosis that considers the incremental value at the population level and demonstrates how additional data could inform more-effective implementation of tuberculosis diagnostic tests under various conditions.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Arinaminpathy, Nimalan -- Dowdy, David -- England -- Nature. 2015 Dec 3;528(7580):S60-7. doi: 10.1038/nature16045.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, Norfolk Place, London W2 1PG, UK. ; Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26633767" target="_blank"〉PubMed〈/a〉
    Keywords: Cost-Benefit Analysis ; *Diagnostic Tests, Routine/economics/standards ; Health Resources/economics ; Humans ; Sensitivity and Specificity ; Time Factors ; Tuberculosis/*diagnosis/*prevention & control/transmission
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  • 126
    Publication Date: 2015-12-18
    Description: Understanding how ecological communities are organized and how they change through time is critical to predicting the effects of climate change. Recent work documenting the co-occurrence structure of modern communities found that most significant species pairs co-occur less frequently than would be expected by chance. However, little is known about how co-occurrence structure changes through time. Here we evaluate changes in plant and animal community organization over geological time by quantifying the co-occurrence structure of 359,896 unique taxon pairs in 80 assemblages spanning the past 300 million years. Co-occurrences of most taxon pairs were statistically random, but a significant fraction were spatially aggregated or segregated. Aggregated pairs dominated from the Carboniferous period (307 million years ago) to the early Holocene epoch (11,700 years before present), when there was a pronounced shift to more segregated pairs, a trend that continues in modern assemblages. The shift began during the Holocene and coincided with increasing human population size and the spread of agriculture in North America. Before the shift, an average of 64% of significant pairs were aggregated; after the shift, the average dropped to 37%. The organization of modern and late Holocene plant and animal assemblages differs fundamentally from that of assemblages over the past 300 million years that predate the large-scale impacts of humans. Our results suggest that the rules governing the assembly of communities have recently been changed by human activity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lyons, S Kathleen -- Amatangelo, Kathryn L -- Behrensmeyer, Anna K -- Bercovici, Antoine -- Blois, Jessica L -- Davis, Matt -- DiMichele, William A -- Du, Andrew -- Eronen, Jussi T -- Faith, J Tyler -- Graves, Gary R -- Jud, Nathan -- Labandeira, Conrad -- Looy, Cindy V -- McGill, Brian -- Miller, Joshua H -- Patterson, David -- Pineda-Munoz, Silvia -- Potts, Richard -- Riddle, Brett -- Terry, Rebecca -- Toth, Aniko -- Ulrich, Werner -- Villasenor, Amelia -- Wing, Scott -- Anderson, Heidi -- Anderson, John -- Waller, Donald -- Gotelli, Nicholas J -- England -- Nature. 2016 Jan 7;529(7584):80-3. doi: 10.1038/nature16447. Epub 2015 Dec 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington DC 20013, USA. ; Department of Environmental Science and Biology, The College at Brockport - SUNY, Brockport, New York 14420, USA. ; School of Natural Sciences, University of California, Merced, 5200 North Lake Road, Merced, California 95343, USA. ; Department of Geology and Geophysics, Yale University, New Haven, Connecticut 06520, USA. ; Hominid Paleobiology Doctoral Program, Center for the Advanced Study of Hominid Paleobiology, Department of Anthropology, George Washington University, Washington DC 20052, USA. ; Department of Geosciences and Geography, University of Helsinki, PO Box 64, 00014 University of Helsinki, Finland. ; School of Social Science, The University of Queensland, Brisbane, Queensland 4072, Australia. ; Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC 20013, USA. ; Center for Macroecology, Evolution and Climate, University of Copenhagen, Copenhagen 2100, Denmark. ; Biological Sciences Graduate Program, University of Maryland, College Park, Maryland 20742, USA. ; Florida Museum of Natural History, University of Florida, Gainsville, Florida 32611, USA. ; Department of Entomology, University of Maryland College Park, College Park, Maryland 20742, USA. ; Key Lab of Insect Evolution and Environmental Changes, Capital Normal University, Beijing 100048, China. ; Department of Integrative Biology and Museum of Paleontology, University of California Berkeley, Berkeley, California 94720, USA. ; School Biology and Ecology &Sustainability Solutions Initiative, University of Maine, Orono, Maine 04469, USA. ; Department of Geology, University of Cincinnati, Cincinnati, Ohio 45221, USA. ; Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia. ; Department of Anthropology, Human Origins Program, National Museum of Natural History, Smithsonian Institution, Washington DC 20013, USA. ; School of Life Sciences, University of Nevada-Las Vegas, Las Vegas, Nevada 89154, USA. ; Department of Integrative Biology, Oregon State University, Corvallis, Oregon 97331, USA. ; Chair of Ecology and Biogeography, Nicolaus Copernicus University, Lwowska 1, 87-100 Torun, Poland. ; Evolutionary Studies Institute, University of the Witwatersrand, Jorissen Street, Braamfontein, Johannesburg 2001, South Africa. ; Department of Botany, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA. ; Department of Biology, University of Vermont, Burlington, Vermont 05405, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26675730" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*history ; Animals ; *Ecosystem ; History, Ancient ; Human Activities/*history ; Humans ; North America ; *Plant Physiological Phenomena ; Population Dynamics ; Time Factors
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  • 127
    Publication Date: 2015-02-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yozwiak, Nathan L -- Schaffner, Stephen F -- Sabeti, Pardis C -- England -- Nature. 2015 Feb 26;518(7540):477-9. doi: 10.1038/518477a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Broad Institute and Harvard University in Cambridge, Massachusetts, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25719649" target="_blank"〉PubMed〈/a〉
    Keywords: *Access to Information/ethics ; Biomedical Research/ethics/*organization & administration ; *Cooperative Behavior ; Coronavirus Infections/epidemiology/virology ; Databases, Nucleic Acid ; *Disease Outbreaks/prevention & control/statistics & numerical data ; Ebolavirus/genetics ; Genomics/methods/organization & administration ; Guidelines as Topic ; Guinea/epidemiology ; *Hemorrhagic Fever, Ebola/diagnosis/epidemiology/therapy/virology ; Humans ; Influenza, Human/epidemiology/virology ; *Information Dissemination/ethics/methods ; International Cooperation ; Internet ; Publishing ; Research Personnel/organization & administration ; Sierra Leone/epidemiology ; Time Factors ; Virology/organization & administration
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  • 128
    Publication Date: 2015-12-04
    Description: Ebola emerged in West Africa around December 2013 and swept through Guinea, Sierra Leone and Liberia, giving rise to 27,748 confirmed, probable and suspected cases reported by 29 July 2015. Case diagnoses during the epidemic have relied on polymerase chain reaction-based tests. Owing to limited laboratory capacity and local transport infrastructure, the delays from sample collection to test results being available have often been 2 days or more. Point-of-care rapid diagnostic tests offer the potential to substantially reduce these delays. We review Ebola rapid diagnostic tests approved by the World Health Organization and those currently in development. Such rapid diagnostic tests could allow early triaging of patients, thereby reducing the potential for nosocomial transmission. In addition, despite the lower test accuracy, rapid diagnostic test-based diagnosis may be beneficial in some contexts because of the reduced time spent by uninfected individuals in health-care settings where they may be at increased risk of infection; this also frees up hospital beds. We use mathematical modelling to explore the potential benefits of diagnostic testing strategies involving rapid diagnostic tests alone and in combination with polymerase chain reaction testing. Our analysis indicates that the use of rapid diagnostic tests with sensitivity and specificity comparable with those currently under development always enhances control, whether evaluated at a health-care-unit or population level. If such tests had been available throughout the recent epidemic, we estimate, for Sierra Leone, that their use in combination with confirmatory polymerase chain-reaction testing might have reduced the scale of the epidemic by over a third.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nouvellet, Pierre -- Garske, Tini -- Mills, Harriet L -- Nedjati-Gilani, Gemma -- Hinsley, Wes -- Blake, Isobel M -- Van Kerkhove, Maria D -- Cori, Anne -- Dorigatti, Ilaria -- Jombart, Thibaut -- Riley, Steven -- Fraser, Christophe -- Donnelly, Christl A -- Ferguson, Neil M -- Medical Research Council/United Kingdom -- Wellcome Trust/United Kingdom -- England -- Nature. 2015 Dec 3;528(7580):S109-16. doi: 10.1038/nature16041.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, Norfolk Place, London W2 1PG, UK. ; Center for Global Health, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26633764" target="_blank"〉PubMed〈/a〉
    Keywords: Africa, Western/epidemiology ; *Diagnostic Tests, Routine ; *Hemorrhagic Fever, Ebola/diagnosis/epidemiology/prevention & ; control/transmission ; Humans ; Time Factors ; Triage
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  • 129
    Publication Date: 2015-10-16
    Description: Studies of individual living cells have revealed that many transcription factors activate in dynamic, and often stochastic, pulses within the same cell. However, it has remained unclear whether cells might exploit the dynamic interaction of these pulses to control gene expression. Here, using quantitative single-cell time-lapse imaging of Saccharomyces cerevisiae, we show that the pulsatile transcription factors Msn2 and Mig1 combinatorially regulate their target genes through modulation of their relative pulse timing. The activator Msn2 and repressor Mig1 showed pulsed activation in either a temporally overlapping or non-overlapping manner during their transient response to different inputs, with only the non-overlapping dynamics efficiently activating target gene expression. Similarly, under constant environmental conditions, where Msn2 and Mig1 exhibit sporadic pulsing, glucose concentration modulated the temporal overlap between pulses of the two factors. Together, these results reveal a time-based mode of combinatorial gene regulation. Regulation through relative signal timing is common in engineering and neurobiology, and these results suggest that it could also function broadly within the signalling and regulatory systems of the cell.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lin, Yihan -- Sohn, Chang Ho -- Dalal, Chiraj K -- Cai, Long -- Elowitz, Michael B -- R01 GM079771/GM/NIGMS NIH HHS/ -- R01 GM079771B/GM/NIGMS NIH HHS/ -- R01 GM086793/GM/NIGMS NIH HHS/ -- R01 GM086793A/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Nov 5;527(7576):54-8. doi: 10.1038/nature15710. Epub 2015 Oct 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California 91125, USA. ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125, USA. ; Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26466562" target="_blank"〉PubMed〈/a〉
    Keywords: DNA-Binding Proteins/metabolism ; *Gene Expression Regulation, Fungal ; Glucose/deficiency/metabolism ; Repressor Proteins/metabolism ; Saccharomyces cerevisiae/*genetics/metabolism ; Saccharomyces cerevisiae Proteins/metabolism ; Signal Transduction ; Single-Cell Analysis ; Time Factors ; Time-Lapse Imaging ; Transcription Factors/metabolism
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  • 130
    Publication Date: 2015-11-13
    Description: Contraction of both skeletal muscle and the heart is thought to be controlled by a calcium-dependent structural change in the actin-containing thin filaments, which permits the binding of myosin motors from the neighbouring thick filaments to drive filament sliding. Here we show by synchrotron small-angle X-ray diffraction of frog (Rana temporaria) single skeletal muscle cells that, although the well-known thin-filament mechanism is sufficient for regulation of muscle shortening against low load, force generation against high load requires a second permissive step linked to a change in the structure of the thick filament. The resting (switched 'OFF') structure of the thick filament is characterized by helical tracks of myosin motors on the filament surface and a short backbone periodicity. This OFF structure is almost completely preserved during low-load shortening, which is driven by a small fraction of constitutively active (switched 'ON') myosin motors outside thick-filament control. At higher load, these motors generate sufficient thick-filament stress to trigger the transition to its long-periodicity ON structure, unlocking the major population of motors required for high-load contraction. This concept of the thick filament as a regulatory mechanosensor provides a novel explanation for the dynamic and energetic properties of skeletal muscle. A similar mechanism probably operates in the heart.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Linari, Marco -- Brunello, Elisabetta -- Reconditi, Massimo -- Fusi, Luca -- Caremani, Marco -- Narayanan, Theyencheri -- Piazzesi, Gabriella -- Lombardi, Vincenzo -- Irving, Malcolm -- England -- Nature. 2015 Dec 10;528(7581):276-9. doi: 10.1038/nature15727. Epub 2015 Nov 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Physiology, Department of Biology, Universita di Firenze, Sesto Fiorentino, 50019 Florence, Italy. ; Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, UdR Firenze, Sesto Fiorentino, 50019 Florence, Italy. ; Randall Division and BHF Centre for Research Excellence, King's College London, London SE1 1UL, UK. ; European Synchrotron Radiation Facility, BP220, F-38043 Grenoble, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26560032" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Male ; Mechanotransduction, Cellular/*physiology ; Muscle, Skeletal/*metabolism ; Myosins/*metabolism ; Rana temporaria ; Synchrotrons ; Time Factors ; X-Ray Diffraction
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  • 131
    Publication Date: 2015-05-29
    Description: Reinforcement learning is a branch of machine learning concerned with using experience gained through interacting with the world and evaluative feedback to improve a system's ability to make behavioural decisions. It has been called the artificial intelligence problem in a microcosm because learning algorithms must act autonomously to perform well and achieve their goals. Partly driven by the increasing availability of rich data, recent years have seen exciting advances in the theory and practice of reinforcement learning, including developments in fundamental technical areas such as generalization, planning, exploration and empirical methodology, leading to increasing applicability to real-life problems.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Littman, Michael L -- England -- Nature. 2015 May 28;521(7553):445-51. doi: 10.1038/nature14540.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Computer Science, Brown University, Providence, Rhode Island 02912, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26017443" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; *Artificial Intelligence ; Empirical Research ; *Feedback ; Markov Chains ; Monte Carlo Method ; Reward ; Time Factors
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  • 132
    Publication Date: 2015-01-07
    Description: Antibiotic resistance is spreading faster than the introduction of new compounds into clinical practice, causing a public health crisis. Most antibiotics were produced by screening soil microorganisms, but this limited resource of cultivable bacteria was overmined by the 1960s. Synthetic approaches to produce antibiotics have been unable to replace this platform. Uncultured bacteria make up approximately 99% of all species in external environments, and are an untapped source of new antibiotics. We developed several methods to grow uncultured organisms by cultivation in situ or by using specific growth factors. Here we report a new antibiotic that we term teixobactin, discovered in a screen of uncultured bacteria. Teixobactin inhibits cell wall synthesis by binding to a highly conserved motif of lipid II (precursor of peptidoglycan) and lipid III (precursor of cell wall teichoic acid). We did not obtain any mutants of Staphylococcus aureus or Mycobacterium tuberculosis resistant to teixobactin. The properties of this compound suggest a path towards developing antibiotics that are likely to avoid development of resistance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ling, Losee L -- Schneider, Tanja -- Peoples, Aaron J -- Spoering, Amy L -- Engels, Ina -- Conlon, Brian P -- Mueller, Anna -- Schaberle, Till F -- Hughes, Dallas E -- Epstein, Slava -- Jones, Michael -- Lazarides, Linos -- Steadman, Victoria A -- Cohen, Douglas R -- Felix, Cintia R -- Fetterman, K Ashley -- Millett, William P -- Nitti, Anthony G -- Zullo, Ashley M -- Chen, Chao -- Lewis, Kim -- AI085612/AI/NIAID NIH HHS/ -- T-RO1AI085585/AI/NIAID NIH HHS/ -- England -- Nature. 2015 Jan 22;517(7535):455-9. doi: 10.1038/nature14098. Epub 2015 Jan 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA. ; 1] Institute of Medical Microbiology, Immunology and Parasitology-Pharmaceutical Microbiology Section, University of Bonn, Bonn 53115, Germany [2] German Centre for Infection Research (DZIF), Partner Site Bonn-Cologne, 53115 Bonn, Germany. ; Antimicrobial Discovery Center, Northeastern University, Department of Biology, Boston, Massachusetts 02115, USA. ; 1] German Centre for Infection Research (DZIF), Partner Site Bonn-Cologne, 53115 Bonn, Germany [2] Institute for Pharmaceutical Biology, University of Bonn, Bonn 53115, Germany. ; Department of Biology, Northeastern University, Boston, Massachusetts 02115, USA. ; Selcia, Ongar, Essex CM5 0GS, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25561178" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anti-Bacterial Agents/biosynthesis/chemistry/isolation & ; purification/*pharmacology ; Betaproteobacteria/chemistry/genetics ; Biological Products/chemistry/isolation & purification/pharmacology ; Cell Wall/chemistry/drug effects/metabolism ; Depsipeptides/biosynthesis/chemistry/isolation & purification/*pharmacology ; Disease Models, Animal ; *Drug Resistance, Microbial/genetics ; Female ; Mice ; Microbial Sensitivity Tests ; Microbial Viability/*drug effects ; Molecular Sequence Data ; Multigene Family/genetics ; Mycobacterium tuberculosis/cytology/*drug effects/genetics ; Peptidoglycan/biosynthesis ; Staphylococcal Infections/drug therapy/microbiology ; Staphylococcus aureus/chemistry/cytology/*drug effects/genetics ; Teichoic Acids/biosynthesis ; Time Factors
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  • 133
    Publication Date: 2015-04-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rubin, Mark A -- England -- Nature. 2015 Apr 16;520(7547):290-1. doi: 10.1038/520290a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute for Precision Medicine at Weill Cornell Medical College and NewYork-Presbyterian Hospital in New York City, New York, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25877189" target="_blank"〉PubMed〈/a〉
    Keywords: Databases, Factual ; Electronic Health Records/*utilization ; Female ; Genetics, Medical/methods/trends ; Genome, Human/genetics ; Genomics/trends ; Humans ; Information Dissemination/*methods ; Molecular Targeted Therapy/trends/*utilization ; Neoplasms/*drug therapy/*genetics ; Pharmacogenetics/trends ; Precision Medicine/trends/*utilization ; Quinolines/adverse effects/therapeutic use ; Time Factors
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  • 134
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2015-04-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Xiangmei, Chen -- Xuan, Zeng -- Li, Piao -- England -- Nature. 2015 Apr 30;520(7549):S26-7. doi: 10.1038/520S26a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25924196" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Child ; Child Rearing ; China ; Female ; Humans ; Male ; Parental Leave ; Pregnancy ; Research Personnel/education/psychology/*statistics & numerical data ; Sex Factors ; Sexism/psychology/*trends ; Time Factors
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  • 135
    Publication Date: 2015-09-25
    Description: Observations of cometary nuclei have revealed a very limited amount of surface water ice, which is insufficient to explain the observed water outgassing. This was clearly demonstrated on comet 9P/Tempel 1, where the dust jets (driven by volatiles) were only partially correlated with the exposed ice regions. The observations of 67P/Churyumov-Gerasimenko have revealed that activity has a diurnal variation in intensity arising from changing insolation conditions. It was previously concluded that water vapour was generated in ice-rich subsurface layers with a transport mechanism linked to solar illumination, but that has not hitherto been observed. Periodic condensations of water vapour very close to, or on, the surface were suggested to explain short-lived outbursts seen near sunrise on comet 9P/Tempel 1. Here we report observations of water ice on the surface of comet 67P/Churyumov-Gerasimenko, appearing and disappearing in a cyclic pattern that follows local illumination conditions, providing a source of localized activity. This water cycle appears to be an important process in the evolution of the comet, leading to cyclical modification of the relative abundance of water ice on its surface.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉De Sanctis, M C -- Capaccioni, F -- Ciarniello, M -- Filacchione, G -- Formisano, M -- Mottola, S -- Raponi, A -- Tosi, F -- Bockelee-Morvan, D -- Erard, S -- Leyrat, C -- Schmitt, B -- Ammannito, E -- Arnold, G -- Barucci, M A -- Combi, M -- Capria, M T -- Cerroni, P -- Ip, W-H -- Kuehrt, E -- McCord, T B -- Palomba, E -- Beck, P -- Quirico, E -- VIRTIS Team -- England -- Nature. 2015 Sep 24;525(7570):500-3. doi: 10.1038/nature14869.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Istituto di Astrofisica e Planetologia Spaziali - INAF, via del fosso del cavaliere 100, 00133 Rome, Italy. ; Institute for Planetary Research, DLR, Rutherfordstrasse 2, 12489 Berlin, Germany. ; LESIA-Observatoire de Paris, CNRS, Universite Pierre et Marie Curie, Universite Paris Diderot, 5 place Jules Janssen, 92195 Meudon, France. ; Universite Grenoble Alpes - CNRS Institut de Planetologie et Astrophysique de Grenoble, Batiment D de Physique, BP 53, 38041 Grenoble Cedex 9, France. ; University of California, Los Angeles, California 90095, USA. ; Department of Atmospheric, Oceanic and Space Sciences, University of Michigan, 2455 Hayward Street, Ann Arbor, Michigan 48109, USA. ; National Central University, No. 300, Jhongda Road, Jhongli District, Taoyuan City, 32001 Taipei, Taiwan. ; Bear Fight Institute, 22 Fiddler's Road, Box 667, Winthrop, Washington 98862, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26399830" target="_blank"〉PubMed〈/a〉
    Keywords: Extraterrestrial Environment/*chemistry ; Ice/*analysis ; *Meteoroids ; Temperature ; Time Factors ; Volatilization
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  • 136
    Publication Date: 2015-02-06
    Description: The platyrrhine primates, or New World monkeys, are immigrant mammals whose fossil record comes from Tertiary and Quaternary sediments of South America and the Caribbean Greater Antilles. The time and place of platyrrhine origins are some of the most controversial issues in primate palaeontology, although an African Palaeogene ancestry has been presumed by most primatologists. Until now, the oldest fossil records of New World monkeys have come from Salla, Bolivia, and date to approximately 26 million years ago, or the Late Oligocene epoch. Here we report the discovery of new primates from the ?Late Eocene epoch of Amazonian Peru, which extends the fossil record of primates in South America back approximately 10 million years. The new specimens are important for understanding the origin and early evolution of modern platyrrhine primates because they bear little resemblance to any extinct or living South American primate, but they do bear striking resemblances to Eocene African anthropoids, and our phylogenetic analysis suggests a relationship with African taxa. The discovery of these new primates brings the first appearance datum of caviomorph rodents and primates in South America back into close correspondence, but raises new questions about the timing and means of arrival of these two mammalian groups.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bond, Mariano -- Tejedor, Marcelo F -- Campbell, Kenneth E Jr -- Chornogubsky, Laura -- Novo, Nelson -- Goin, Francisco -- England -- Nature. 2015 Apr 23;520(7548):538-41. doi: 10.1038/nature14120. Epub 2015 Feb 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET), Division Paleontologia Vertebrados, Museo de Ciencias Naturales de La Plata, B1900FWA La Plata, Argentina. ; 1] CONICET, Centro Nacional Patagonico, Boulevard Almirante Brown 2915, 9120 Puerto Madryn, Chubut, Argentina [2] Facultad de Ciencias Naturales, Sede Trelew, Universidad Nacional de la Patagonia 'San Juan Bosco', 9100 Trelew, Chubut, Argentina. ; Vertebrate Zoology, Natural History Museum of Los Angeles County, Los Angeles, California 90007, USA. ; 1] CONICET, Seccion Paleontologia de Vertebrados, Museo Argentino de Ciencias Naturales 'Bernardino Rivadavia', Avenida Angel Gallardo 470, C1405DJR Buenos Aires, Argentina [2] Universidad Nacional de Lujan, Departamento de Ciencias Basicas. Ruta Nacional 5 and Avenida Constitucion, 6700 Lujan, Buenos Aires Province, Argentina. ; CONICET, Centro Nacional Patagonico, Boulevard Almirante Brown 2915, 9120 Puerto Madryn, Chubut, Argentina.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25652825" target="_blank"〉PubMed〈/a〉
    Keywords: Africa/ethnology ; Animal Migration ; Animals ; *Fossils ; Microscopy, Electron, Scanning ; *Phylogeny ; Platyrrhini/anatomy & histology/*classification ; South America ; Time Factors
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  • 137
    Publication Date: 2015-07-15
    Description: Volcanic eruptions contribute to climate variability, but quantifying these contributions has been limited by inconsistencies in the timing of atmospheric volcanic aerosol loading determined from ice cores and subsequent cooling from climate proxies such as tree rings. Here we resolve these inconsistencies and show that large eruptions in the tropics and high latitudes were primary drivers of interannual-to-decadal temperature variability in the Northern Hemisphere during the past 2,500 years. Our results are based on new records of atmospheric aerosol loading developed from high-resolution, multi-parameter measurements from an array of Greenland and Antarctic ice cores as well as distinctive age markers to constrain chronologies. Overall, cooling was proportional to the magnitude of volcanic forcing and persisted for up to ten years after some of the largest eruptive episodes. Our revised timescale more firmly implicates volcanic eruptions as catalysts in the major sixth-century pandemics, famines, and socioeconomic disruptions in Eurasia and Mesoamerica while allowing multi-millennium quantification of climate response to volcanic forcing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sigl, M -- Winstrup, M -- McConnell, J R -- Welten, K C -- Plunkett, G -- Ludlow, F -- Buntgen, U -- Caffee, M -- Chellman, N -- Dahl-Jensen, D -- Fischer, H -- Kipfstuhl, S -- Kostick, C -- Maselli, O J -- Mekhaldi, F -- Mulvaney, R -- Muscheler, R -- Pasteris, D R -- Pilcher, J R -- Salzer, M -- Schupbach, S -- Steffensen, J P -- Vinther, B M -- Woodruff, T E -- England -- Nature. 2015 Jul 30;523(7562):543-9. doi: 10.1038/nature14565. Epub 2015 Jul 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Desert Research Institute, Nevada System of Higher Education, Reno, Nevada 89512, USA. ; Department of Earth and Space Sciences, University of Washington, Seattle, Washington 98195, USA. ; Space Sciences Laboratory, University of California, Berkeley, California 94720, USA. ; School of Geography, Archaeology and Palaeoecology, Queen's University Belfast, Belfast BT7 1NN, UK. ; Yale Climate and Energy Institute, and Department of History, Yale University, New Haven, Connecticut 06511, USA. ; 1] Swiss Federal Research Institute WSL, 8903 Birmensdorf, Switzerland [2] Oeschger Centre for Climate Change Research, University of Bern, 3012 Bern, Switzerland [3] Global Change Research Centre AS CR, 60300 Brno, Czech Republic. ; 1] Department of Physics, Purdue University, West Lafayette, Indiana 47907, USA [2] Department of Earth, Atmospheric, and Planetary Sciences, Purdue University, West Lafayette, Indiana 47907, USA. ; Centre for Ice and Climate, Niels Bohr Institute, University of Copenhagen, 2100 Copenhagen, Denmark. ; 1] Oeschger Centre for Climate Change Research, University of Bern, 3012 Bern, Switzerland [2] Climate and Environmental Physics, University of Bern, 3012 Bern, Switzerland. ; Alfred-Wegener-Institut Helmholtz-Zentrum fur Polar- und Meeresforschung, 27570 Bremerhaven, Germany. ; Department of History, The University of Nottingham, Nottingham NG7 2RD, UK. ; Department of Geology, Quaternary Sciences, Lund University, 22362 Lund, Sweden. ; British Antarctic Survey, Natural Environment Research Council, Cambridge CB3 0ET, UK. ; The Laboratory of Tree-Ring Research, University of Arizona, Tucson, Arizona 85721, USA. ; Department of Physics, Purdue University, West Lafayette, Indiana 47907, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26153860" target="_blank"〉PubMed〈/a〉
    Keywords: Aerosols/analysis ; Americas ; Antarctic Regions ; Atmosphere/chemistry ; Beryllium ; Carbon Radioisotopes ; *Climate ; Disasters/history ; Europe ; Greenland ; History, Ancient ; History, Medieval ; Ice/analysis ; Radioisotopes ; Radiometric Dating ; Seasons ; Sulfur ; *Temperature ; Time Factors ; Trees/anatomy & histology/growth & development ; Tropical Climate ; Volcanic Eruptions/*history
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  • 138
    Publication Date: 2015-05-23
    Description: Human evolutionary scholars have long supposed that the earliest stone tools were made by the genus Homo and that this technological development was directly linked to climate change and the spread of savannah grasslands. New fieldwork in West Turkana, Kenya, has identified evidence of much earlier hominin technological behaviour. We report the discovery of Lomekwi 3, a 3.3-million-year-old archaeological site where in situ stone artefacts occur in spatiotemporal association with Pliocene hominin fossils in a wooded palaeoenvironment. The Lomekwi 3 knappers, with a developing understanding of stone's fracture properties, combined core reduction with battering activities. Given the implications of the Lomekwi 3 assemblage for models aiming to converge environmental change, hominin evolution and technological origins, we propose for it the name 'Lomekwian', which predates the Oldowan by 700,000 years and marks a new beginning to the known archaeological record.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Harmand, Sonia -- Lewis, Jason E -- Feibel, Craig S -- Lepre, Christopher J -- Prat, Sandrine -- Lenoble, Arnaud -- Boes, Xavier -- Quinn, Rhonda L -- Brenet, Michel -- Arroyo, Adrian -- Taylor, Nicholas -- Clement, Sophie -- Daver, Guillaume -- Brugal, Jean-Philip -- Leakey, Louise -- Mortlock, Richard A -- Wright, James D -- Lokorodi, Sammy -- Kirwa, Christopher -- Kent, Dennis V -- Roche, Helene -- England -- Nature. 2015 May 21;521(7552):310-5. doi: 10.1038/nature14464.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Turkana Basin Institute, Stony Brook University, Stony Brook, New York 11794-4364, USA [2] CNRS, UMR 7055, Prehistoire et Technologie, Universite Paris Ouest Nanterre La Defense, 21 allee de l'Universite, 92023 Nanterre Cedex, France [3] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya. ; 1] Turkana Basin Institute, Stony Brook University, Stony Brook, New York 11794-4364, USA [2] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [3] Department of Anthropology and Center for Human Evolutionary Studies, Rutgers University, New Brunswick, New Jersey 08901, USA. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] Department of Anthropology and Center for Human Evolutionary Studies, Rutgers University, New Brunswick, New Jersey 08901, USA [3] Department of Earth and Planetary Sciences, Rutgers University, Piscataway, New Jersey 08854, USA. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] Department of Earth and Planetary Sciences, Rutgers University, Piscataway, New Jersey 08854, USA [3] Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York 10964, USA. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] CNRS, UPR 2147, Dynamique de l'Evolution Humaine, 44 rue de l'Amiral Mouchez, 75014 Paris, France. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] CNRS, UMR 5199 PACEA, Universite de Bordeaux, 33615 Pessac, France. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] Department of Earth and Planetary Sciences, Rutgers University, Piscataway, New Jersey 08854, USA [3] Department of Sociology, Anthropology and Social Work, Seton Hall University, South Orange, New Jersey 07079, USA. ; 1] CNRS, UMR 5199 PACEA, Universite de Bordeaux, 33615 Pessac, France [2] Inrap, Centre Mixte de Recherche Archeologique, Domaine de Campagne, 24620 Campagne, France. ; CNRS, UMR 7055, Prehistoire et Technologie, Universite Paris Ouest Nanterre La Defense, 21 allee de l'Universite, 92023 Nanterre Cedex, France. ; 1] CNRS, UMR 7055, Prehistoire et Technologie, Universite Paris Ouest Nanterre La Defense, 21 allee de l'Universite, 92023 Nanterre Cedex, France [2] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] Inrap, 34-36 avenue Paul-Vaillant Couturier, 93120 La Courneuve, France. ; IPHEP, Institut de Paleoprimatologie, Paleontologie Humaine: Evolution et Paleoenvironnements, CNRS, UMR 7262, Universite de Poitiers, Bat. B35 - TSA 51106, 6 rue Michel Brunet, 86073 Poitiers Cedex 9, France. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] Aix-Marseille Universite, CNRS, MCC, UMR 7269, LAMPEA, 13094 Aix-en-Provence Cedex 2, France. ; Turkana Basin Institute, Stony Brook University, Stony Brook, New York 11794-4364, USA. ; Department of Earth and Planetary Sciences, Rutgers University, Piscataway, New Jersey 08854, USA. ; West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya. ; 1] West Turkana Archaeological Project, P.O. Box 40658-00100, Ngara Rd, Nairobi, Kenya [2] National Museums of Kenya, Department of Earth Sciences, Archaeology Section, P.O. Box 40658-00100 Ngara Rd, Nairobi, Kenya. ; 1] Department of Earth and Planetary Sciences, Rutgers University, Piscataway, New Jersey 08854, USA [2] Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York 10964, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25993961" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Archaeology ; Biological Evolution ; Environment ; Fossils ; History, Ancient ; *Hominidae ; Kenya ; Paleontology ; Technology/history ; Time Factors ; *Tool Use Behavior
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  • 139
    Publication Date: 2015-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- Weiss, Kenneth R -- England -- Nature. 2015 Dec 17;528(7582):315-6. doi: 10.1038/528315a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26672532" target="_blank"〉PubMed〈/a〉
    Keywords: Congresses as Topic ; Developing Countries/economics ; Disasters/prevention & control ; Global Warming/*legislation & jurisprudence/*prevention & control ; Goals ; Government Regulation ; Greenhouse Effect/legislation & jurisprudence/prevention & control ; International Cooperation/*legislation & jurisprudence ; Negotiating ; Paris ; Renewable Energy ; Research Report ; Temperature ; Time Factors
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  • 140
    Publication Date: 2015-06-23
    Description: Neanderthals are thought to have disappeared in Europe approximately 39,000-41,000 years ago but they have contributed 1-3% of the DNA of present-day people in Eurasia. Here we analyse DNA from a 37,000-42,000-year-old modern human from Pestera cu Oase, Romania. Although the specimen contains small amounts of human DNA, we use an enrichment strategy to isolate sites that are informative about its relationship to Neanderthals and present-day humans. We find that on the order of 6-9% of the genome of the Oase individual is derived from Neanderthals, more than any other modern human sequenced to date. Three chromosomal segments of Neanderthal ancestry are over 50 centimorgans in size, indicating that this individual had a Neanderthal ancestor as recently as four to six generations back. However, the Oase individual does not share more alleles with later Europeans than with East Asians, suggesting that the Oase population did not contribute substantially to later humans in Europe.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537386/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537386/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Fu, Qiaomei -- Hajdinjak, Mateja -- Moldovan, Oana Teodora -- Constantin, Silviu -- Mallick, Swapan -- Skoglund, Pontus -- Patterson, Nick -- Rohland, Nadin -- Lazaridis, Iosif -- Nickel, Birgit -- Viola, Bence -- Prufer, Kay -- Meyer, Matthias -- Kelso, Janet -- Reich, David -- Paabo, Svante -- GM100233/GM/NIGMS NIH HHS/ -- R01 GM100233/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Aug 13;524(7564):216-9. doi: 10.1038/nature14558. Epub 2015 Jun 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, IVPP, CAS, Beijing 100044, China [2] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany. ; Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany. ; Emil Racovita" Institute of Speleology, Cluj Branch, 400006 Cluj, Romania. ; Emil Racovita" Institute of Speleology, Department of Geospeleology and Paleontology, 010986 Bucharest 12, Romania. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA [3] Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany. ; Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA. ; 1] Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany [2] Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany [3] Department of Anthropology, University of Toronto, Toronto, Ontario, M5S 2S2, Canada. ; 1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA [3] Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts, 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26098372" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Asian Continental Ancestry Group/genetics ; European Continental Ancestry Group/genetics ; Far East ; *Fossils ; Genome, Human/genetics ; Humans ; Hybridization, Genetic/*genetics ; Indians, North American/genetics ; Male ; Neanderthals/*genetics ; *Phylogeny ; Romania ; Sequence Analysis, DNA ; Time Factors
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  • 141
    Publication Date: 2015-03-06
    Description: Over 20% of Earth's terrestrial surface is underlain by permafrost with vast stores of carbon that, once thawed, may represent the largest future transfer of carbon from the biosphere to the atmosphere. This process is largely dependent on microbial responses, but we know little about microbial activity in intact, let alone in thawing, permafrost. Molecular approaches have recently revealed the identities and functional gene composition of microorganisms in some permafrost soils and a rapid shift in functional gene composition during short-term thaw experiments. However, the fate of permafrost carbon depends on climatic, hydrological and microbial responses to thaw at decadal scales. Here we use the combination of several molecular 'omics' approaches to determine the phylogenetic composition of the microbial communities, including several draft genomes of novel species, their functional potential and activity in soils representing different states of thaw: intact permafrost, seasonally thawed active layer and thermokarst bog. The multi-omics strategy reveals a good correlation of process rates to omics data for dominant processes, such as methanogenesis in the bog, as well as novel survival strategies for potentially active microbes in permafrost.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hultman, Jenni -- Waldrop, Mark P -- Mackelprang, Rachel -- David, Maude M -- McFarland, Jack -- Blazewicz, Steven J -- Harden, Jennifer -- Turetsky, Merritt R -- McGuire, A David -- Shah, Manesh B -- VerBerkmoes, Nathan C -- Lee, Lang Ho -- Mavrommatis, Kostas -- Jansson, Janet K -- England -- Nature. 2015 May 14;521(7551):208-12. doi: 10.1038/nature14238. Epub 2015 Mar 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, 94720, USA. ; US Geological Survey, 345 Middlefield Road, Menlo Park, California 94025, USA. ; 1] Biology Department, 18111 Nordhoff Street, California State University Northridge, Northridge, California 91330, USA [2] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA. ; Department of Integrative Biology, 50 Stone Road East, University of Guelph, Guelph, Ontario N1G 2W1, Canada. ; US Geological Survey, Alaska Cooperative Fish and Wildlife Research Unit, 211A Irving I Building, University of Alaska Fairbanks, Fairbanks, Alaska 99775, USA. ; Chemical Sciences Division, One Bethel Valley Road, Building 1059, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6420, USA. ; Graduate School of Genome Science and Technology, University of Tennessee and Oak Ridge National Laboratory, 2510 River Drive, Knoxville, Tennessee 37996, USA. ; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA. ; 1] Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, 94720, USA [2] US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA [3] Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, Berkeley, California 94720, USA [4] Center for Permafrost Research (CENPERM), Department of Biology, Universitetsparken 15, University of Copenhagen, Copenhagen, DK-2100 Copenhagen, Denmark.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25739499" target="_blank"〉PubMed〈/a〉
    Keywords: Alaska ; Atmosphere/chemistry ; Carbon Cycle ; Climate ; Denitrification ; Freezing ; Genome, Bacterial/*genetics ; Iron/metabolism ; Metagenome/*genetics ; Methane/metabolism ; Microbiota/genetics/*physiology ; Nitrates/metabolism ; Nitrogen/metabolism ; Oxidation-Reduction ; Permafrost/*microbiology ; Phylogeny ; Seasons ; *Soil Microbiology ; Sulfur/metabolism ; Time Factors ; *Wetlands
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  • 142
    Publication Date: 2015-06-05
    Description: During bacterial growth, a cell approximately doubles in size before division, after which it splits into two daughter cells. This process is subjected to the inherent perturbations of cellular noise and thus requires regulation for cell-size homeostasis. The mechanisms underlying the control and dynamics of cell size remain poorly understood owing to the difficulty in sizing individual bacteria over long periods of time in a high-throughput manner. Here we measure and analyse long-term, single-cell growth and division across different Escherichia coli strains and growth conditions. We show that a subset of cells in a population exhibit transient oscillations in cell size with periods that stretch across several (more than ten) generations. Our analysis reveals that a simple law governing cell-size control-a noisy linear map-explains the origins of these cell-size oscillations across all strains. This noisy linear map implements a negative feedback on cell-size control: a cell with a larger initial size tends to divide earlier, whereas one with a smaller initial size tends to divide later. Combining simulations of cell growth and division with experimental data, we demonstrate that this noisy linear map generates transient oscillations, not just in cell size, but also in constitutive gene expression. Our work provides new insights into the dynamics of bacterial cell-size regulation with implications for the physiological processes involved.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tanouchi, Yu -- Pai, Anand -- Park, Heungwon -- Huang, Shuqiang -- Stamatov, Rumen -- Buchler, Nicolas E -- You, Lingchong -- DP2 OD008654/OD/NIH HHS/ -- DP2 OD008654-01/OD/NIH HHS/ -- R01GM098642/GM/NIGMS NIH HHS/ -- R01GM110494/GM/NIGMS NIH HHS/ -- England -- Nature. 2015 Jul 16;523(7560):357-60. doi: 10.1038/nature14562. Epub 2015 Jun 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biomedical Engineering, Duke University, Durham, North Carolina 27708, USA. ; 1] Department of Physics, Duke University, Durham, North Carolina 27708, USA [2] Department of Biology, Duke University, Durham, North Carolina 27708, USA. ; Computational Biology and Bioinformatics, Duke University, Durham, North Carolina 27708, USA. ; 1] Department of Physics, Duke University, Durham, North Carolina 27708, USA [2] Department of Biology, Duke University, Durham, North Carolina 27708, USA [3] Center for Genomic and Computational Biology, Duke University, Durham, North Carolina 27708, USA. ; 1] Department of Biomedical Engineering, Duke University, Durham, North Carolina 27708, USA [2] Center for Genomic and Computational Biology, Duke University, Durham, North Carolina 27708, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26040722" target="_blank"〉PubMed〈/a〉
    Keywords: *Cell Division/genetics ; Cell Size ; Computer Simulation ; Escherichia coli/classification/*cytology/*genetics/growth & development ; *Feedback, Physiological ; *Gene Expression Regulation, Bacterial ; Homeostasis/genetics ; Models, Biological ; Single-Cell Analysis ; Time Factors
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  • 143
    Publication Date: 2015-12-04
    Description: Most human breast cancers have diversified genomically and biologically by the time they become clinically evident. Early events involved in their genesis and the cellular context in which these events occur have thus been difficult to characterize. Here we present the first formal evidence of the shared and independent ability of basal cells and luminal progenitors, isolated from normal human mammary tissue and transduced with a single oncogene (KRAS(G12D)), to produce serially transplantable, polyclonal, invasive ductal carcinomas within 8 weeks of being introduced either subrenally or subcutaneously into immunodeficient mice. DNA barcoding of the initial cells revealed a dramatic change in the numbers and sizes of clones generated from them within 2 weeks, and the first appearance of many 'new' clones in tumours passaged into secondary recipients. Both primary and secondary tumours were phenotypically heterogeneous and primary tumours were categorized transcriptionally as 'normal-like'. This system challenges previous concepts that carcinogenesis in normal human epithelia is necessarily a slow process requiring the acquisition of multiple driver mutations. It also presents the first description of initial events that accompany the genesis and evolution of malignant human mammary cell populations, thereby contributing new understanding of the rapidity with which heterogeneity in their properties can develop.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nguyen, Long V -- Pellacani, Davide -- Lefort, Sylvain -- Kannan, Nagarajan -- Osako, Tomo -- Makarem, Maisam -- Cox, Claire L -- Kennedy, William -- Beer, Philip -- Carles, Annaick -- Moksa, Michelle -- Bilenky, Misha -- Balani, Sneha -- Babovic, Sonja -- Sun, Ivan -- Rosin, Miriam -- Aparicio, Samuel -- Hirst, Martin -- Eaves, Connie J -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2015 Dec 10;528(7581):267-71. doi: 10.1038/nature15742. Epub 2015 Dec 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Terry Fox Laboratory, BC Cancer Agency, 675 West 10th Avenue, Vancouver, British Columbia V5Z 1L3, Canada. ; Department of Medical Genetics, University of British Columbia, Vancouver, British ColumbiaV6T 2B5, Canada. ; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia V6T 2B5, Canada. ; Department of Molecular Oncology, BC Cancer Agency, 675 West 10th Avenue, Vancouver, British Columbia V5Z 1L3, Canada. ; Centre for High-Throughput Biology, Department of Microbiology &Immunology, University of British Columbia, 2125 East Mall, Vancouver, British Columbia V6T 1Z4, Canada. ; Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 675 West 10th Avenue, Vancouver, British Columbia V5Z 1L3, Canada. ; Biomedical Physiology and Kinesiology, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia V5A 1S6, Canada. ; Cancer Control Unit, BC Cancer Agency, 675 West 10th Avenue, Vancouver, British Columbia V5Z 1L3, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26633636" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breast Neoplasms/genetics/*physiopathology ; Carcinoma, Ductal, Breast/genetics/*physiopathology ; Cell Lineage/genetics ; *Cell Transformation, Neoplastic ; Cells, Cultured ; DNA Barcoding, Taxonomic ; Female ; Gene Expression Profiling ; Heterografts ; Humans ; Lentivirus/genetics ; Mammary Glands, Human/cytology/*physiopathology ; Mice ; Mice, Inbred Strains ; Mice, SCID ; Proto-Oncogene Proteins/genetics ; Time Factors ; Transduction, Genetic ; ras Proteins/genetics
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  • 144
    Publication Date: 2015-08-20
    Description: Chloroplasts arose from cyanobacteria, mitochondria arose from proteobacteria. Both organelles have conserved their prokaryotic biochemistry, but their genomes are reduced, and most organelle proteins are encoded in the nucleus. Endosymbiotic theory posits that bacterial genes in eukaryotic genomes entered the eukaryotic lineage via organelle ancestors. It predicts episodic influx of prokaryotic genes into the eukaryotic lineage, with acquisition corresponding to endosymbiotic events. Eukaryotic genome sequences, however, increasingly implicate lateral gene transfer, both from prokaryotes to eukaryotes and among eukaryotes, as a source of gene content variation in eukaryotic genomes, which predicts continuous, lineage-specific acquisition of prokaryotic genes in divergent eukaryotic groups. Here we discriminate between these two alternatives by clustering and phylogenetic analysis of eukaryotic gene families having prokaryotic homologues. Our results indicate (1) that gene transfer from bacteria to eukaryotes is episodic, as revealed by gene distributions, and coincides with major evolutionary transitions at the origin of chloroplasts and mitochondria; (2) that gene inheritance in eukaryotes is vertical, as revealed by extensive topological comparison, sparse gene distributions stemming from differential loss; and (3) that continuous, lineage-specific lateral gene transfer, although it sometimes occurs, does not contribute to long-term gene content evolution in eukaryotic genomes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ku, Chuan -- Nelson-Sathi, Shijulal -- Roettger, Mayo -- Sousa, Filipa L -- Lockhart, Peter J -- Bryant, David -- Hazkani-Covo, Einat -- McInerney, James O -- Landan, Giddy -- Martin, William F -- England -- Nature. 2015 Aug 27;524(7566):427-32. doi: 10.1038/nature14963. Epub 2015 Aug 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Molecular Evolution, Heinrich-Heine University, 40225 Dusseldorf, Germany. ; Institute of Fundamental Sciences, Massey University, Palmerston North 4474, New Zealand. ; Department of Mathematics and Statistics, University of Otago, Dunedin 9054, New Zealand. ; Department of Natural and Life Sciences, The Open University of Israel, Ra'anana 43107, Israel. ; Department of Biology, National University of Ireland, Maynooth, County Kildare, Ireland. ; Michael Smith Building, The University of Manchester, Oxford Rd, Manchester M13 9PL, UK. ; Genomic Microbiology Group, Institute of Microbiology, Christian-Albrechts-University of Kiel, 24118 Kiel, Germany. ; Instituto de Tecnologia Quimica e Biologica, Universidade Nova de Lisboa, 2780-157 Oeiras, Portugal.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26287458" target="_blank"〉PubMed〈/a〉
    Keywords: Archaea/genetics ; Bacteria/genetics ; Cluster Analysis ; Eukaryota/classification/*genetics ; Eukaryotic Cells/metabolism ; *Evolution, Molecular ; Gene Transfer, Horizontal/genetics ; Genome/genetics ; Mitochondria/genetics ; *Models, Genetic ; Organelles/*genetics ; Phylogeny ; Plastids/genetics ; Prokaryotic Cells/metabolism ; Proteome/genetics ; Symbiosis/*genetics ; Time Factors
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  • 145
    Publication Date: 2015-02-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Iovanna, Juan -- England -- Nature. 2015 Feb 5;518(7537):35. doi: 10.1038/518035b.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉INSERM UMR1068, CNRS UMR7258, Aix-Marseille University and Institute Paoli-Calmettes, Marseille, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25652985" target="_blank"〉PubMed〈/a〉
    Keywords: Contract Services/economics/*legislation & jurisprudence ; Contracts/legislation & jurisprudence ; Employment/economics/*legislation & jurisprudence ; France ; Laboratories/*manpower ; Laboratory Personnel/*economics ; Research Personnel/*economics ; Time Factors
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  • 146
    Publication Date: 2015-07-16
    Description: Grid cells in the medial entorhinal cortex have spatial firing fields that repeat periodically in a hexagonal pattern. When animals move, activity is translated between grid cells in accordance with the animal's displacement in the environment. For this translation to occur, grid cells must have continuous access to information about instantaneous running speed. However, a powerful entorhinal speed signal has not been identified. Here we show that running speed is represented in the firing rate of a ubiquitous but functionally dedicated population of entorhinal neurons distinct from other cell populations of the local circuit, such as grid, head-direction and border cells. These 'speed cells' are characterized by a context-invariant positive, linear response to running speed, and share with grid cells a prospective bias of approximately 50-80 ms. Our observations point to speed cells as a key component of the dynamic representation of self-location in the medial entorhinal cortex.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kropff, Emilio -- Carmichael, James E -- Moser, May-Britt -- Moser, Edvard I -- England -- Nature. 2015 Jul 23;523(7561):419-24. doi: 10.1038/nature14622. Epub 2015 Jul 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology, Olav Kyrres gate 9, MTFS, 7491 Trondheim, Norway [2] Leloir Institute, IIBBA - CONICET, Buenos Aires, C1405BWE, Argentina. ; Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology, Olav Kyrres gate 9, MTFS, 7491 Trondheim, Norway.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26176924" target="_blank"〉PubMed〈/a〉
    Keywords: Acceleration ; Action Potentials/physiology ; Animals ; Entorhinal Cortex/*cytology/*physiology ; Environment ; Male ; Models, Neurological ; Neurons/*physiology ; Rats ; Rats, Long-Evans ; Running/*physiology/*psychology ; Time Factors
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  • 147
    Publication Date: 2015-06-26
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hartgerink, Chris H J -- England -- Nature. 2015 Jun 25;522(7557):419. doi: 10.1038/522419d.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Tilburg University, the Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26108842" target="_blank"〉PubMed〈/a〉
    Keywords: California ; Language ; *Research Report ; Scientific Misconduct/*legislation & jurisprudence ; Sweden ; Time Factors ; *Translations
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  • 148
    Publication Date: 2015-01-09
    Description: Policy makers have generally agreed that the average global temperature rise caused by greenhouse gas emissions should not exceed 2 degrees C above the average global temperature of pre-industrial times. It has been estimated that to have at least a 50 per cent chance of keeping warming below 2 degrees C throughout the twenty-first century, the cumulative carbon emissions between 2011 and 2050 need to be limited to around 1,100 gigatonnes of carbon dioxide (Gt CO2). However, the greenhouse gas emissions contained in present estimates of global fossil fuel reserves are around three times higher than this, and so the unabated use of all current fossil fuel reserves is incompatible with a warming limit of 2 degrees C. Here we use a single integrated assessment model that contains estimates of the quantities, locations and nature of the world's oil, gas and coal reserves and resources, and which is shown to be consistent with a wide variety of modelling approaches with different assumptions, to explore the implications of this emissions limit for fossil fuel production in different regions. Our results suggest that, globally, a third of oil reserves, half of gas reserves and over 80 per cent of current coal reserves should remain unused from 2010 to 2050 in order to meet the target of 2 degrees C. We show that development of resources in the Arctic and any increase in unconventional oil production are incommensurate with efforts to limit average global warming to 2 degrees C. Our results show that policy makers' instincts to exploit rapidly and completely their territorial fossil fuels are, in aggregate, inconsistent with their commitments to this temperature limit. Implementation of this policy commitment would also render unnecessary continued substantial expenditure on fossil fuel exploration, because any new discoveries could not lead to increased aggregate production.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McGlade, Christophe -- Ekins, Paul -- England -- Nature. 2015 Jan 8;517(7533):187-90. doi: 10.1038/nature14016.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University College London (UCL), Institute for Sustainable Resources, Central House, 14 Upper Woburn Place, London WC1H 0NN, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25567285" target="_blank"〉PubMed〈/a〉
    Keywords: Arctic Regions ; Atmosphere/chemistry ; Carbon Dioxide/analysis ; Coal/economics/supply & distribution/utilization ; Databases, Factual ; Fossil Fuels/economics/*supply & distribution/*utilization ; *Geography ; Global Warming/*prevention & control/*statistics & numerical data ; Greenhouse Effect/prevention & control/statistics & numerical data ; Models, Theoretical ; Oil and Gas Fields ; Time Factors
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  • 149
    Publication Date: 2015-01-22
    Description: Neurobiological models of long-term memory propose a mechanism by which initially weak memories are strengthened through subsequent activation that engages common neural pathways minutes to hours later. This synaptic tag-and-capture model has been hypothesized to explain how inconsequential information is selectively consolidated following salient experiences. Behavioural evidence for tag-and-capture is provided by rodent studies in which weak early memories are strengthened by future behavioural training. Whether a process of behavioural tagging occurs in humans to transform weak episodic memories into stable long-term memories is unknown. Here we show, in humans, that information is selectively consolidated if conceptually related information, putatively represented in a common neural substrate, is made salient through an emotional learning experience. Memory for neutral objects was selectively enhanced if other objects from the same category were paired with shock. Retroactive enhancements as a result of emotional learning were observed following a period of consolidation, but were not observed in an immediate memory test or for items strongly encoded before fear conditioning. These findings provide new evidence for a generalized retroactive memory enhancement, whereby inconsequential information can be retroactively credited as relevant, and therefore selectively remembered, if conceptually related information acquires salience in the future.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432479/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432479/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dunsmoor, Joseph E -- Murty, Vishnu P -- Davachi, Lila -- Phelps, Elizabeth A -- F31 DA036361/DA/NIDA NIH HHS/ -- R01 MH047692/MH/NIMH NIH HHS/ -- R01 MH074692/MH/NIMH NIH HHS/ -- R01 MH097085/MH/NIMH NIH HHS/ -- T32 MH019524/MH/NIMH NIH HHS/ -- England -- Nature. 2015 Apr 16;520(7547):345-8. doi: 10.1038/nature14106. Epub 2015 Jan 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Psychology and Center for Neural Sciences, New York University, New York, New York 10003, USA. ; 1] Department of Psychology and Center for Neural Sciences, New York University, New York, New York 10003, USA [2] Nathan Kline Institute, Orangeburg, New York 10962, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25607357" target="_blank"〉PubMed〈/a〉
    Keywords: Conditioning, Classical/physiology ; Emotions/*physiology ; Fear/physiology/psychology ; Female ; Humans ; Male ; Memory, Episodic ; Memory, Long-Term/*physiology ; Memory, Short-Term/*physiology ; Mental Recall/physiology ; Models, Neurological ; Neural Pathways ; Photic Stimulation ; Recognition (Psychology)/physiology ; Time Factors ; Young Adult
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  • 150
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2015-04-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Powell, Kendall -- England -- Nature. 2015 Apr 9;520(7546):144-7. doi: 10.1038/520144a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25855437" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Career Mobility ; Education, Graduate/*statistics & numerical data/*trends ; Employment/*statistics & numerical data ; Laboratories/manpower/organization & administration ; Research Personnel/economics/*education/*statistics & numerical data ; Salaries and Fringe Benefits/economics/statistics & numerical data ; Time Factors
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  • 151
    Publication Date: 2015-04-10
    Description: HIV-1 immunotherapy with a combination of first generation monoclonal antibodies was largely ineffective in pre-clinical and clinical settings and was therefore abandoned. However, recently developed single-cell-based antibody cloning methods have uncovered a new generation of far more potent broadly neutralizing antibodies to HIV-1 (refs 4, 5). These antibodies can prevent infection and suppress viraemia in humanized mice and nonhuman primates, but their potential for human HIV-1 immunotherapy has not been evaluated. Here we report the results of a first-in-man dose escalation phase 1 clinical trial of 3BNC117, a potent human CD4 binding site antibody, in uninfected and HIV-1-infected individuals. 3BNC117 infusion was well tolerated and demonstrated favourable pharmacokinetics. A single 30 mg kg(-1) infusion of 3BNC117 reduced the viral load in HIV-1-infected individuals by 0.8-2.5 log10 and viraemia remained significantly reduced for 28 days. Emergence of resistant viral strains was variable, with some individuals remaining sensitive to 3BNC117 for a period of 28 days. We conclude that, as a single agent, 3BNC117 is safe and effective in reducing HIV-1 viraemia, and that immunotherapy should be explored as a new modality for HIV-1 prevention, therapy and cure.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Caskey, Marina -- Klein, Florian -- Lorenzi, Julio C C -- Seaman, Michael S -- West, Anthony P Jr -- Buckley, Noreen -- Kremer, Gisela -- Nogueira, Lilian -- Braunschweig, Malte -- Scheid, Johannes F -- Horwitz, Joshua A -- Shimeliovich, Irina -- Ben-Avraham, Sivan -- Witmer-Pack, Maggi -- Platten, Martin -- Lehmann, Clara -- Burke, Leah A -- Hawthorne, Thomas -- Gorelick, Robert J -- Walker, Bruce D -- Keler, Tibor -- Gulick, Roy M -- Fatkenheuer, Gerd -- Schlesinger, Sarah J -- Nussenzweig, Michel C -- HHSN261200800001E/PHS HHS/ -- U19AI111825-01/AI/NIAID NIH HHS/ -- UL1 TR000043/TR/NCATS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Jun 25;522(7557):487-91. doi: 10.1038/nature14411. Epub 2015 Apr 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Molecular Immunology, The Rockefeller University, New York, New York 10065, USA. ; Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02215, USA. ; Division of Biology, California Institute of Technology, Pasadena, California 91125, USA. ; 1] First Department of Internal Medicine, University Hospital of Cologne, D-50924 Cologne, Germany [2] Clinical Trials Center Cologne, ZKS Koln, BMBF 01KN1106, University of Cologne, Cologne, Germany. ; 1] Laboratory of Molecular Immunology, The Rockefeller University, New York, New York 10065, USA [2] Albert Ludwigs University of Freiburg, 79085 Freiburg, Germany. ; 1] First Department of Internal Medicine, University Hospital of Cologne, D-50924 Cologne, Germany [2] German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany. ; 1] Laboratory of Molecular Immunology, The Rockefeller University, New York, New York 10065, USA [2] Division of Infectious Diseases, Weill Medical College of Cornell University, New York, New York 10065, USA. ; Celldex Therapeutics, Inc., Hampton, New Jersey 08827, USA. ; AIDS and Cancer Virus Program, Leidos Biomedical Research, Frederick, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA. ; Ragon Institute of MGH, MIT and Harvard, Howard Hughes Medical Institute, Massachusetts General Hospital and Harvard Medical School, Cambridge, Massachusetts 02139, USA. ; Division of Infectious Diseases, Weill Medical College of Cornell University, New York, New York 10065, USA. ; 1] Laboratory of Molecular Immunology, The Rockefeller University, New York, New York 10065, USA [2] Howard Hughes Medical Institute, The Rockefeller University, New York, New York 10065, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25855300" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Amino Acid Sequence ; Antibodies, Monoclonal/administration & ; dosage/immunology/pharmacokinetics/therapeutic use ; Antibodies, Neutralizing/administration & dosage/adverse ; effects/*immunology/pharmacology/therapeutic use ; Antigens, CD4/metabolism ; Binding Sites ; Case-Control Studies ; Evolution, Molecular ; Female ; HIV Antibodies/administration & dosage/adverse ; effects/*immunology/pharmacology/therapeutic use ; HIV Envelope Protein gp120/chemistry/immunology ; HIV Infections/immunology/*therapy/virology ; HIV-1/chemistry/drug effects/*immunology ; Humans ; Immunization, Passive/methods ; Male ; Middle Aged ; Molecular Sequence Data ; Time Factors ; Viral Load/drug effects/*immunology ; Viremia/immunology/*therapy/virology ; Young Adult
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 152
    Publication Date: 1989-06-16
    Description: Phencyclidine (PCP), a dissociative anesthetic and widely abused psychotomimetic drug, and MK-801, a potent PCP receptor ligand, have neuroprotective properties stemming from their ability to antagonize the excitotoxic actions of endogenous excitatory amino acids such as glutamate and aspartate. There is growing interest in the potential application of these compounds in the treatment of neurological disorders. However, there is an apparent neurotoxic effect of PCP and related agents (MK-801, tiletamine, and ketamine), which has heretofore been overlooked: these drugs induce acute pathomorphological changes in specific populations of brain neurons when administered subcutaneously to adult rats in relatively low doses. These findings raise new questions regarding the safety of these agents in the clinical management of neurodegenerative diseases and reinforce concerns about the potential risks associated with illicit use of PCP.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Olney, J W -- Labruyere, J -- Price, M T -- DA 53568/DA/NIDA NIH HHS/ -- MH 38894/MH/NIMH NIH HHS/ -- New York, N.Y. -- Science. 1989 Jun 16;244(4910):1360-2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2660263" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cerebral Cortex/cytology/*drug effects/pathology ; Dibenzocycloheptenes/*toxicity ; Dizocilpine Maleate ; Female ; Ketamine/toxicity ; Male ; Microscopy, Electron ; Neurons/drug effects ; Phencyclidine/*toxicity ; Rats ; Rats, Inbred Strains ; Tiletamine/toxicity ; Time Factors
    Print ISSN: 0036-8075
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  • 153
    Publication Date: 1989-01-20
    Description: Both interleukin-1 (IL-1) and platelet-derived growth factor (PDGF) induce proliferation of cultured fibroblasts and smooth muscle cells. These polypeptide mediators are released by activated macrophages and other cell types in response to injury and are thought to have a role in tissue remodeling and a number of pathologic processes. Analysis of the kinetics of [3H]thymidine incorporation by cultured fibroblasts demonstrated that the response to IL-1 is delayed approximately 8 hours relative to their response to PDGF. IL-1 transiently stimulated expression of the PDGF A-chain gene, with maximum induction after approximately 2 hours. Subsequent synthesis and release of PDGF activity into the medium was detected as early as 4 hours after IL-1 stimulation, and downregulation of the binding site for the PDGF-AA isoform of PDGF followed PDGF-AA secretion. Antibodies to PDGF completely block the mitogenic response to IL-1. Therefore, the mitogenic activity of IL-1 for fibroblasts and smooth muscle cells appears to be indirect and mediated by induction of the PDGF A-chain gene.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Raines, E W -- Dower, S K -- Ross, R -- HL-18645/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1989 Jan 20;243(4889):393-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, University of Washington, Seattle 98195.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2783498" target="_blank"〉PubMed〈/a〉
    Keywords: Cells, Cultured ; Fibroblasts/cytology/*drug effects ; Gene Expression Regulation/drug effects ; Humans ; Interleukin-1/*pharmacology ; Muscle, Smooth/cytology/*drug effects ; Platelet-Derived Growth Factor/*physiology ; RNA, Messenger/genetics ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 154
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-01-06
    Description: Gravitropism, the bending of plants in response to gravity, is caused by differential growth rates on two sides of a responding organ. The general belief, although somewhat controversial, is that auxins play a major role in gravitropism by controlling the rate of cell extension. The tissue print technique was used to ascertain the distribution of auxin-regulated RNAs during the gravitropic response of soybean hypocotyls. In vertically oriented seedlings, auxin-regulated RNAs are symmetrically distributed in the elongating region of the hypocotyl. In horizontally orientated seedlings the distribution becomes asymmetrical within 20 minutes and the greatest asymmetry coincides with the onset of rapid bending. The results provide a clear correlation between the dynamic expression of genes under auxin control and a morphogenetic phenomenon traditionally known as an auxin response.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McClure, B A -- Guilfoyle, T -- DCB 8517676/DC/NIDCD NIH HHS/ -- New York, N.Y. -- Science. 1989 Jan 6;243:91-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, University of Missouri-Columbia 65211, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11540631" target="_blank"〉PubMed〈/a〉
    Keywords: Gene Expression Regulation, Plant/drug effects/physiology ; *Gravitation ; Gravitropism/drug effects/*genetics ; Hybridization, Genetic ; Hypocotyl/cytology/genetics/growth & development/metabolism ; Indoleacetic Acids/genetics/*metabolism/pharmacology ; Plant Growth Regulators/genetics/*metabolism/pharmacology ; RNA Probes ; RNA, Plant/*metabolism ; Soybeans/cytology/*genetics/growth & development/metabolism ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 155
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-11-03
    Description: We review the recent advances in understanding transitions within the cell cycle. These have come from both genetic and biochemical approaches. We discuss the phylogenetic conservation of the mechanisms that induce mitosis and their implications for other transitions in the cell cycle.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Murray, A W -- Kirschner, M W -- New York, N.Y. -- Science. 1989 Nov 3;246(4930):614-21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physiology, School of Medicine, University of California, San Francisco 94143-0448.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2683077" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Cell Cycle ; *Genes, Regulator ; Interphase ; Mitosis ; *Models, Biological ; Models, Genetic ; Time Factors
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  • 156
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-07-07
    Description: Tomato plants homozygous for the diageotropica (dgt) mutation exhibit morphological and physiological abnormalities which suggest that they are unable to respond to the plant growth hormone auxin (indole-3-acetic acid). The photoaffinity auxin analog [3H]5N3-IAA specifically labels a polypeptide doublet of 40 and 42 kilodaltons in membrane preparations from stems of the parental variety, VFN8, but not from stems of plants containing the dgt mutation. In roots of the mutant plants, however, labeling is indistinguishable from that in VFN8. These data suggest that the two polypeptides are part of a physiologically important auxin receptor system, which is altered in a tissue-specific manner in the mutant.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hicks, G R -- Rayle, D L -- Lomax, T L -- DCB-8718731/DC/NIDCD NIH HHS/ -- New York, N.Y. -- Science. 1989 Jul 7;245:52-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Botany and Plant Pathology, Oregon State University, Corvallis 97331-2902.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11537490" target="_blank"〉PubMed〈/a〉
    Keywords: Affinity Labels ; Azides/*metabolism ; Binding Sites ; Hypocotyl/cytology/genetics/metabolism/ultrastructure ; Indoleacetic Acids/*analysis/*metabolism ; Intracellular Membranes/chemistry/metabolism/ultrastructure ; Lycopersicon esculentum/cytology/*genetics/metabolism/ultrastructure ; Microsomes/ultrastructure ; *Mutation ; Photolysis ; *Plant Growth Regulators ; Plant Proteins ; Plant Roots/cytology/genetics/metabolism/ultrastructure ; Receptors, Cell Surface/analysis/genetics/metabolism ; Time Factors
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 157
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-11-03
    Description: The events of the cell cycle of most organisms are ordered into dependent pathways in which the initiation of late events is dependent on the completion of early events. In eukaryotes, for example, mitosis is dependent on the completion of DNA synthesis. Some dependencies can be relieved by mutation (mitosis may then occur before completion of DNA synthesis), suggesting that the dependency is due to a control mechanism and not an intrinsic feature of the events themselves. Control mechanisms enforcing dependency in the cell cycle are here called checkpoints. Elimination of checkpoints may result in cell death, infidelity in the distribution of chromosomes or other organelles, or increased susceptibility to environmental perturbations such as DNA damaging agents. It appears that some checkpoints are eliminated during the early embryonic development of some organisms; this fact may pose special problems for the fidelity of embryonic cell division.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hartwell, L H -- Weinert, T A -- GM17709/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1989 Nov 3;246(4930):629-34.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, University of Washington, Seattle 98195.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2683079" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Cell Cycle ; DNA Replication ; Embryo, Mammalian/physiology ; Embryo, Nonmammalian ; Models, Biological ; Models, Genetic ; Time Factors
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  • 158
    Publication Date: 1989-03-17
    Description: Human endothelial cells produced a neutrophil chemotactic factor (NCF) upon stimulation with tumor necrosis factor-alpha (TNF-alpha), interleukin-1 beta (IL-1 beta), or lipopolysaccharide (LPS). The expression of endothelial cell-derived NCF messenger RNA and biological activity was both time- and concentration-dependent. Maximal NCF mRNA expression occurred at 10 and at 2 nanograms per milliliter for TNF and IL-1 beta, respectively; mRNA expression was first observed 1 hour after stimulation and was maintained for at least 24 hours. In situ hybridization analysis showed that NCF mRNA peaked in treated cells by 24 hours, whereas unstimulated cells were negative. These studies demonstrated that endothelial cells may participate in neutrophil-mediated inflammation by synthesizing a chemotactic factor in response to specific monokines and LPS.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Strieter, R M -- Kunkel, S L -- Showell, H J -- Remick, D G -- Phan, S H -- Ward, P A -- Marks, R M -- HL31237/HL/NHLBI NIH HHS/ -- HL31936/HL/NHLBI NIH HHS/ -- HL35276/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1989 Mar 17;243(4897):1467-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Internal Medicine, University of Michigan Medical School, Ann Arbor 48109.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2648570" target="_blank"〉PubMed〈/a〉
    Keywords: Blotting, Northern ; Chemotactic Factors/*genetics ; Endothelium, Vascular/*physiology ; Gene Expression Regulation/drug effects ; Humans ; In Vitro Techniques ; Interleukin-1/*pharmacology ; Interleukin-8 ; Lipopolysaccharides/*pharmacology ; Oligonucleotide Probes ; Time Factors ; Tumor Necrosis Factor-alpha/*pharmacology
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 159
    Publication Date: 1989-03-17
    Description: Wall shear stress generated by blood flow may regulate the expression of fibrinolytic proteins by endothelial cells. Tissue plasminogen activator (tPA) and plasminogen activator inhibitor, type 1 (PAI-1) secretion by cultured human endothelial cells were not affected by exposure to venous shear stress (4 dynes/cm2). However, at arterial shear stresses of 15 and 25 dynes/cm2, the tPA secretion rate was 2.1 and 3.0 times greater, respectively, than the basal tPA secretion rate. PAI-1 secretion was unaffected by shear stress over the entire physiological range.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Diamond, S L -- Eskin, S G -- McIntire, L V -- HL 18672/HL/NHLBI NIH HHS/ -- HL 23016/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1989 Mar 17;243(4897):1483-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Rice University, Biomedical Engineering Laboratory, Houston, TX 77251.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2467379" target="_blank"〉PubMed〈/a〉
    Keywords: 1-Methyl-3-isobutylxanthine/pharmacology ; Cells, Cultured ; Endothelium, Vascular/*secretion ; Epoprostenol/pharmacology ; Glycoproteins/secretion ; Humans ; Iloprost ; In Vitro Techniques ; Indomethacin/pharmacology ; Plasminogen Inactivators ; Rheology ; Secretory Rate/drug effects ; Stress, Mechanical ; Time Factors ; Tissue Plasminogen Activator/*secretion
    Print ISSN: 0036-8075
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 160
    Publication Date: 1989-05-12
    Description: The age of the molecular organization of life as expressed in the genetic code can be estimated from experimental data. Comparative sequence analysis of transfer RNA by the method of statistical geometry in sequence space suggests that about one-third of the present transfer RNA sequence divergence was present at the urkingdom level about the time when archaebacteria separated from eubacteria. It is concluded that the genetic code is not older than, but almost as old as our planet. While this result may not be unexpected, it was not clear until now that interpretable data exist that permit inferences about such early stages of life as the establishment of the genetic code.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Eigen, M -- Lindemann, B F -- Tietze, M -- Winkler-Oswatitsch, R -- Dress, A -- von Haeseler, A -- New York, N.Y. -- Science. 1989 May 12;244(4905):673-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max-Planck-Institut fur biophysikalische Chemie, Gottingen, Federal Republic of Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2497522" target="_blank"〉PubMed〈/a〉
    Keywords: Anticodon ; Archaea/genetics ; Base Sequence ; *Biological Evolution ; Codon ; Computer Simulation ; Eubacterium/genetics ; *Genetic Code ; Mutation ; Nucleic Acid Conformation ; Phylogeny ; *RNA, Transfer ; Statistics as Topic ; Time Factors
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  • 161
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1989-01-20
    Description: Interaction of antigen in the proper histocompatibility context with the T lymphocyte antigen receptor leads to an orderly series of events resulting in morphologic change, proliferation, and the acquisition of immunologic function. In most T lymphocytes two signals are required to initiate this process, one supplied by the antigen receptor and the other by accessory cells or agents that activate protein kinase C. Recently, DNA sequences have been identified that act as response elements for one or the other of the two signals, but do not respond to both signals. The fact that these sequences lie within the control regions of the same genes suggests that signals originating from separate cell membrane receptors are integrated at the level of the responsive gene. The view is put forth that these signals initiate a contingent series of gene activations that bring about proliferation and impart immunologic function.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Crabtree, G R -- CA 39612/CA/NCI NIH HHS/ -- HL 33942/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1989 Jan 20;243(4889):355-61.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, Stanford University Medical School, CA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2783497" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Gene Expression Regulation ; Humans ; Interleukin-2/genetics ; *Lymphocyte Activation ; Mice ; Oncogenes ; Protein-Tyrosine Kinases/genetics ; T-Lymphocytes/*physiology ; Time Factors
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  • 162
    Publication Date: 1989-06-16
    Description: The response of the human circadian pacemaker to light was measured in 45 resetting trials. Each trial consisted of an initial endogenous circadian phase assessment, a three-cycle stimulus which included 5 hours of bright light per cycle, and a final phase assessment. The stimulus induced strong (type 0) resetting, with responses highly dependent on the initial circadian phase of light exposure. The magnitude and direction of the phase shifts were modulated by the timing of exposure to ordinary room light, previously thought to be undetectable by the human pacemaker. The data indicate that the sensitivity of the human circadian pacemaker to light is far greater than previously recognized and have important implications for the therapeutic use of light in the management of disorders of circadian regulation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Czeisler, C A -- Kronauer, R E -- Allan, J S -- Duffy, J F -- Jewett, M E -- Brown, E N -- Ronda, J M -- 1-RO1-AG06072/AG/NIA NIH HHS/ -- 2-S07-RR-05950/RR/NCRR NIH HHS/ -- 5-M01-RR00888/RR/NCRR NIH HHS/ -- New York, N.Y. -- Science. 1989 Jun 16;244(4910):1328-33.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Medicine, Harvard Medical School, Brigham and Women's Hospital, Boston, MA 02115.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2734611" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; *Circadian Rhythm ; Humans ; Male ; Models, Biological ; *Phototherapy ; Time Factors
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  • 163
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-06-24
    Description: Recovery of hair cells was studied at various times after acoustic trauma in adult quail. An initial loss of hair cells recovered to within 5 percent of the original number of cells. Tritium-labeled thymidine was injected after this acoustic trauma to determine if mitosis played a role in recovery of hair cells. Within 10 days of acoustic trauma, incorporation of [3H]thymidine was seen over the nuclei of hair cells and supporting cells in the region of initial hair cell loss. Thus, hair cell regeneration can occur after embryonic terminal mitosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ryals, B M -- Rubel, E W -- NS24522/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 1988 Jun 24;240(4860):1774-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Audiology and Speech Pathology, Veterans Administration Medical Center, Richmond, VA 23249.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3381101" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Animals ; Cell Division ; Coturnix ; DNA Replication ; Hair Cells, Auditory/*cytology/physiology ; Hearing Loss, Noise-Induced/*physiopathology ; Time Factors
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  • 164
    Publication Date: 1988-06-24
    Description: Inclusion of normal rabbit serum (NRS) in culture medium after interspecific fusion of hyperimmunized rabbit spleen cells with murine SP2/0 myeloma cells produced 271 rabbit-mouse hybridomas (RMHs) that secreted rabbit immunoglobulin against group A Streptococcus (GAS). Continued use of NRS-supplemented medium during cloning yielded stabilized monoclonal RMH lines that have secreted GAS-specific rabbit antibody at concentrations similar to murine hybridomas (3 to 8 micrograms per 10(6) cells per 24 hours), for over 4 months of culture in vitro. The use of NRS as a medium supplement during initial culture, cloning, and stabilization of RMHs enables production of considerably more specific rabbit monoclonal antibody (mAb)-secreting RMHs than have previously been reported.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Raybould, T J -- Takahashi, M -- New York, N.Y. -- Science. 1988 Jun 24;240(4860):1788-90.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Allelix Inc., Diagnostics Division, Mississauga, Ontario, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3289119" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Bacterial/*immunology ; Antibodies, Monoclonal/*immunology ; Antibody Specificity ; Cell Fusion ; Cell Line ; Hybridomas/*immunology ; Karyotyping ; Mice/*immunology ; Rabbits/*immunology ; Streptococcus pyogenes/immunology ; Time Factors
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  • 165
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-09-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Young, S S -- New York, N.Y. -- Science. 1988 Sep 2;241(4870):1232-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Glaxo Inc., Research Triangle Park, NC 27709.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3413488" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; False Positive Reactions ; *Mutagenicity Tests/methods ; Rodentia ; Time Factors
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  • 166
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-12-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Roberts, L -- New York, N.Y. -- Science. 1988 Dec 2;242(4883):1245.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2848316" target="_blank"〉PubMed〈/a〉
    Keywords: *Base Sequence ; Cytomegalovirus/genetics ; DNA/*genetics ; Growth Hormone/genetics ; Humans ; Molecular Biology/methods ; Time Factors
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  • 167
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-06-24
    Description: Epidermal growth factor (EGF) is a well-characterized polypeptide hormone with diverse biological activities, including stimulation of astrocyte division. A soluble astrocyte mitogen inhibitor, immunologically related to the EGF receptor, is present in rat brain. Injury to the brain causes a time-dependent reduction in the levels of this inhibitor and the concomitant appearance of EGF receptor on the astrocyte surface. Intracerebral injection of antibody capable of binding the inhibitor caused the appearance of numerous reactive astrocytes. EGF receptor-related inhibitors may play a key role in the control of glial cell division in both normal and injured brain.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nieto-Sampedro, M -- AG 00538-09A/AG/NIA NIH HHS/ -- New York, N.Y. -- Science. 1988 Jun 24;240(4860):1784-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Psychobiology, University of California, Irvine 92717.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3289118" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Astrocytes/*physiology ; Brain Injuries/*physiopathology ; Cell Division ; Cross Reactions ; Immunologic Techniques ; Rats ; Receptor, Epidermal Growth Factor/*antagonists & inhibitors/immunology ; Receptors, Mitogen/*antagonists & inhibitors ; Structure-Activity Relationship ; Time Factors
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  • 168
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-05-06
    Description: In many bird species, those pairs that breed earlier in the season have higher reproductive success than those that breed later. Since breeding date is known to be heritable, it is unclear why it does not evolve to an earlier time. Under assumptions outlined by Fisher, a model is developed that shows how breeding date may have considerable additive genetic variance, appear to be under directional selection, and yet not evolve. These results provide a general explanation for a persistent correlation of fitness with a variety of traits in natural populations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Price, T -- Kirkpatrick, M -- Arnold, S J -- 1R01GM3549201/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1988 May 6;240(4853):798-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, University of California, San Diego, La Jolla 92093.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3363360" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Birds/*physiology ; Female ; Fertility ; Genetic Variation ; Nutritional Status ; *Reproduction ; *Seasons ; *Selection, Genetic ; Time Factors
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  • 169
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-09-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Booth, W -- New York, N.Y. -- Science. 1988 Sep 16;241(4872):1426.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3047869" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials as Topic ; Drug Evaluation/*standards ; Risk ; Time Factors ; United States ; *United States Food and Drug Administration
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  • 170
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-02-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lewin, R -- New York, N.Y. -- Science. 1988 Feb 5;239(4840):561-3.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3340843" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; DNA/genetics ; Humans ; *Models, Genetic ; Time Factors
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  • 171
    Publication Date: 1988-07-29
    Description: The binding of antigen or monoclonal antibody to the T cell receptor for antigen or the closely associated CD3 complex causes increases in the concentration of intracellular ionized calcium and subsequent cell proliferation. By measuring second messenger production in primary cultures of human immunodeficiency virus (HIV-1)--infected T cells stimulated with monoclonal antibodies specific for either CD3 or CD2, a specific impairment of membrane signaling was revealed. The HIV-1--infected T cells were unable to mobilize Ca2+ after stimulation with anti-CD3, whereas CD2-induced calcium mobilization remained intact. Furthermore, the HIV-1--infected cells proliferated poorly after CD3 stimulation, although the cells retained normal DNA synthesis in response to interleukin-2 stimulation. These results show that the signals initiated by CD2 and CD3 can be regulated independently within the same T cell; uncoupling of signal transduction after antigen-specific stimulation provides a biochemical mechanism to explain, in part, the profound immunodeficiency of patients with HIV-1 infection.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Linette, G P -- Hartzman, R J -- Ledbetter, J A -- June, C H -- New York, N.Y. -- Science. 1988 Jul 29;241(4865):573-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, Georgetown University School of Medicine, Washington, DC 20007.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2899908" target="_blank"〉PubMed〈/a〉
    Keywords: Acquired Immunodeficiency Syndrome/*physiopathology ; Antibodies, Monoclonal/immunology ; Antigens, CD2 ; Antigens, CD3 ; Antigens, Differentiation/physiology ; Antigens, Differentiation, T-Lymphocyte/*physiology ; Calcium/physiology ; Hiv ; Humans ; Receptors, Antigen, T-Cell/*physiology ; Receptors, Immunologic/physiology ; T-Lymphocytes/microbiology/*physiology ; Time Factors
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  • 172
    Publication Date: 1988-06-03
    Description: Because of the difficulty in identifying the date of exposure to type 1 of the human immunodeficiency virus (HIV-1) infection in persons other than transfusion recipients, studies of the incubation periods for acquired immunodeficiency syndrome (AIDS) have been limited. When data from a cohort of 84 homosexual and bisexual men that provided the information to determine the years of conversion of sera infected with HIV-1 were analyzed, a model for the proportion likely to develop AIDS and the incubation period for AIDS in homosexual men could be derived. The maximum likelihood estimate for the proportion of infected homosexual men developing AIDS is 0.99 (90% confidence interval ranging from 0.38 to 1). Furthermore, the maximum likelihood estimate for the mean incubation period for AIDS in homosexual men is 7.8 years (90% confidence interval ranging from 4.2 years to 15.0 years), which is close to the estimate of 8.2 years for adults developing transfusion-associated AIDS.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lui, K J -- Darrow, W W -- Rutherford, G W 3rd -- New York, N.Y. -- Science. 1988 Jun 3;240(4857):1333-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Injury Epidemiology and Control, Centers for Disease Control, Atlanta, GA 30333.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3163848" target="_blank"〉PubMed〈/a〉
    Keywords: Acquired Immunodeficiency Syndrome/etiology/immunology/*physiopathology ; Antibodies, Viral/analysis ; Blood Transfusion ; Enzyme-Linked Immunosorbent Assay ; HIV/physiology ; HIV Antibodies ; HIV Seropositivity ; *Homosexuality ; Humans ; Immunoassay ; Male ; Mathematics ; *Models, Biological ; Time Factors
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  • 173
    Publication Date: 1988-07-08
    Description: Three forms of nonassociative learning (habituation, dishabituation, and sensitization) have commonly been explained by a dual-process view in which a single decrementing process produces habituation and a single facilitatory process produces both dishabituation and sensitization. A key prediction of this view is that dishabituation and sensitization should always occur together. However, we show that dishabituation and sensitization, as well as an additional process, inhibition, can be behaviorally dissociated in Aplysia by (i) their differential time of onset, (ii) their differential sensitivity to stimulus intensity, and (iii) their differential emergence during development. A simple dual-process view cannot explain these results; rather, a multiprocess view appears necessary to account for nonassociative learning in Aplysia.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Marcus, E A -- Nolen, T G -- Rankin, C H -- Carew, T J -- 5-F32-NS-07480/NS/NINDS NIH HHS/ -- MH41083/MH/NIMH NIH HHS/ -- New York, N.Y. -- Science. 1988 Jul 8;241(4862):210-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Yale University, New Haven, CT 06520.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3388032" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Animals ; Aplysia/*physiology ; Behavior, Animal/*physiology ; Learning/*physiology ; Time Factors
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  • 174
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-08-19
    Description: The study of resistance marker rearrangement in Spiroplasma citri mutants provides evidence of transfer of chromosomal information followed by recombination. This is the first report of such a transfer in vivo in the mollicutes--that is, in the smallest self-replicating organisms. The double-resistant phenotypes obtained are stable even without selection pressure. The mechanism of gene transfer is insensitive to deoxyribonuclease, requires contact, and possibly, areas of fusion of the cell membranes; it shares properties with the transfer by protoplast fusion in Gram-positive bacteria. The extensive degenerative evolution of mollicutes has retained, in S. citri, bacterial functions of chromosomal transfer and recombination.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Barroso, G -- Labarere, J -- New York, N.Y. -- Science. 1988 Aug 19;241(4868):959-61.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratoire de Genetique Moleculaire, Universite de Bordeaux II-INRA, C.R.A. de Bordeaux, Pont-de-la-Maye, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3261453" target="_blank"〉PubMed〈/a〉
    Keywords: Arsenates/pharmacology ; *Chromosomes, Bacterial ; Cloning, Molecular ; Culture Media ; Drug Resistance, Microbial/genetics ; Herbicides/pharmacology ; Mutation ; Oxides/pharmacology ; Phenotype ; *Recombination, Genetic ; Spiroplasma/drug effects/*genetics ; Time Factors ; *Transfection ; Vanadates/pharmacology
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  • 175
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-09-30
    Description: An increase in the synthesis of heat shock proteins that is induced in cells in vitro by hyperthermia or other types of metabolic stress correlates with enhanced cell survival upon further stress. To determine if a similar increase in stress tolerance could be elicited in vivo, rats were made hyperthermic, and then their retinas were tested for sensitivity to light damage. This treatment resulted in a marked decrease in photoreceptor degeneration after exposure to bright light as compared to normothermic animals. Concomitant with such protection was an increase in retinal synthesis of three heat shock proteins. Thus, a physiological rise in body temperature enhances the stress tolerance of nerve tissue, perhaps by increasing heat shock protein production.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Barbe, M F -- Tytell, M -- Gower, D J -- Welch, W J -- 1 R01 EY07616/EY/NEI NIH HHS/ -- GM 33551-06/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1988 Sep 30;241(4874):1817-20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Anatomy, Medical College of Pennsylvania, Philadelphia 19144.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3175623" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blotting, Western ; Heat-Shock Proteins/*physiology ; *Hot Temperature ; In Vitro Techniques ; Rats ; Retina/pathology/physiology/*radiation effects ; Time Factors
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  • 176
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1988-11-04
    Description: The rat lens undergoes dramatic growth during early postnatal development. Lens weight increased by a factor of 23 in 26 days. Growth rate per day oscillated between 0 and 87 percent. A new culture system was designed to study the oscillations in growth during development. Lens growth and transparency in vitro required pulsatile delivery of platelet-derived growth factor (PDGF) in HL-1 serum-free medium. Continuous delivery of HL-1 medium with PDGF or pulsatile delivery of HL-1 medium without PDGF resulted in lens opacity and no growth. These results provide direct evidence that PDGF stimulates an epithelial tissue and that oscillations in growth occur during normal development of the rat lens.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brewitt, B -- Clark, J I -- EY-04542/EY/NEI NIH HHS/ -- EY-07031/EY/NEI NIH HHS/ -- New York, N.Y. -- Science. 1988 Nov 4;242(4879):777-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Structure, University of Washington, School of Medicine, Seattle 98195.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3187521" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Drug Administration Schedule ; Epithelium/physiology ; In Vitro Techniques ; Lens, Crystalline/anatomy & histology/*growth & development ; Organ Size ; Periodicity ; Platelet-Derived Growth Factor/administration & dosage/*pharmacology ; Rats ; Time Factors
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  • 177
    Publication Date: 1988-09-30
    Description: Interleukin-3 (IL-3) is a member of a family of growth factors, each of which supports the proliferation and development of hematopoietic precursors in culture. Although the biologic effects of the different hematopoietic growth factors have been well documented in different culture systems, it has only recently become possible to study the activities of these molecules in vivo. In comparison with the later acting hematopoietic growth factors granulocyte-macrophage colony-stimulating factor (GM-CSF) and granulocyte colony-stimulating factor, IL-3 elicited a delayed and relatively modest leukocytosis when continuously infused intravenously in primates. The IL-3 infusion, however, greatly potentiated the responsiveness of the animal to subsequent administration of a low dose of GM-CSF. These results suggest that IL-3 expands an early cell population in vivo that subsequently requires the action of a later acting factor such as GM-CSF to complete its development. Optimal stimulation of hematopoiesis may be achieved with combinations of hematopoietic growth factors.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Donahue, R E -- Seehra, J -- Metzger, M -- Lefebvre, D -- Rock, B -- Carbone, S -- Nathan, D G -- Garnick, M -- Sehgal, P K -- Laston, D -- RR00168/RR/NCRR NIH HHS/ -- New York, N.Y. -- Science. 1988 Sep 30;241(4874):1820-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Genetics Institute, Cambridge, MA 02140.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3051378" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Colony-Stimulating Factors/*pharmacology ; Drug Synergism ; Granulocyte-Macrophage Colony-Stimulating Factor ; Growth Substances/*pharmacology ; Hematopoiesis/*drug effects ; Interleukin-3/*pharmacology ; Leukocyte Count ; Macaca fascicularis ; Time Factors
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  • 178
    Publication Date: 1987-04-10
    Description: Survey questions often probe respondents for quantitative facts about events in their past: "During the last 2 weeks, on days when you drank liquor, about how many drinks did you have?" "During the past 12 months, how many visits did you make to a dentist?" "When did you last work at a full-time job?" are all examples from national surveys. Although questions like these make an implicit demand to remember and enumerate specific autobiographical episodes, respondents frequently have trouble complying because of limits on their ability to recall. In these situations, respondents resort to inferences that use partial information from memory to construct a numeric answer. Results from cognitive psychology can be useful in understanding and investigating these phenomena. In particular, cognitive research can help in identifying situations that inhibit or facilitate recall and can reveal inferences that affect the accuracy of respondents' answers.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bradburn, N M -- Rips, L J -- Shevell, S K -- New York, N.Y. -- Science. 1987 Apr 10;236(4798):157-61.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3563494" target="_blank"〉PubMed〈/a〉
    Keywords: Cognition ; Data Collection ; Humans ; Memory/*physiology ; Mental Recall ; *Surveys and Questionnaires ; Time Factors
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  • 179
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-07-03
    Description: The functional organization of the cerebral cortex is modified dramatically by sensory experience during early postnatal life. The basis for these modifications is a type of synaptic plasticity that may also contribute to some forms of adult learning. The question of how synapses modify according to experience has been approached by determining theoretically what is required of a modification mechanism to account for the available experimental data in the developing visual cortex. The resulting theory states precisely how certain variables might influence synaptic modifications. This insight has led to the development of a biologically plausible molecular model for synapse modification in the cerebral cortex.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bear, M F -- Cooper, L N -- Ebner, F F -- New York, N.Y. -- Science. 1987 Jul 3;237(4810):42-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3037696" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Algorithms ; Animals ; Cats ; Learning/*physiology ; Models, Theoretical ; *Neuronal Plasticity ; Synapses/*physiology ; Synaptic Transmission ; Time Factors ; Visual Cortex/*physiology ; Visual Pathways/physiology
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  • 180
    Publication Date: 1987-11-20
    Description: The distribution of presynaptic endings on the surfaces of autonomic ganglion cells was mapped in living mice after intravenous administration of a styryl pyridinium dye. The staining and imaging techniques did not appear to damage the ganglion cells, or the synapses on them; these procedures could therefore be repeated after an arbitrary period. Observations of the same neurons at intervals of up to 3 weeks indicate that the pattern of preganglionic terminals on many of these nerve cells gradually changes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Purves, D -- Voyvodic, J T -- Magrassi, L -- Yawo, H -- New York, N.Y. -- Science. 1987 Nov 20;238(4830):1122-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, MO 63110.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3685967" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Coloring Agents ; Fluorescent Dyes ; Ganglia, Parasympathetic/*cytology/physiology ; Membrane Potentials ; Mice ; Nerve Endings/ultrastructure ; Neuronal Plasticity ; Pyridinium Compounds ; Time Factors ; Video Recording
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  • 181
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-01-02
    Description: The occurrence of seizure activity in human temporal lobe epilepsy or status epilepticus is often associated with a characteristic pattern of cell loss in the hippocampus. An experimental model that replicates this pattern of damage in normal animals by electrical stimulation of the afferent pathway to the hippocampus was developed to study changes in structure and function that occur as a result of repetitive seizures. Hippocampal granule cell seizure activity caused a persistent loss of recurrent inhibition and irreversibly damaged adjacent interneurons. Immunocytochemical staining revealed unexpectedly that gamma-aminobutyric acid (GABA)-containing neurons, thought to mediate inhibition in this region and predicted to be damaged by seizures, had survived. In contrast, there was a nearly complete loss of adjacent somatostatin-containing interneurons and mossy cells that may normally activate inhibitory neurons. These results suggest that the seizure-induced loss of a basket cell-activating system, rather than a loss of inhibitory basket cells themselves, may cause disinhibition and thereby play a role in the pathophysiology and pathology of the epileptic state.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sloviter, R S -- NS 18201/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 1987 Jan 2;235(4784):73-6.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2879352" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cholecystokinin/physiology ; Disease Models, Animal ; Electric Stimulation ; Epilepsy/pathology/*physiopathology ; Hippocampus/*physiopathology ; Immunologic Techniques ; Interneurons/*pathology/physiopathology ; Male ; Neural Inhibition ; Rats ; Somatostatin/*physiology ; Time Factors ; Vasoactive Intestinal Peptide/metabolism ; gamma-Aminobutyric Acid/*physiology
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  • 182
    Publication Date: 1987-01-30
    Description: In seven right-handed adults, the brain electrical patterns before accurate performance differed from the patterns before inaccurate performance. Activity overlying the left frontal cortex and the motor and parietal cortices contralateral to the performing hand preceded accurate left- or right-hand performance. Additional strong activity overlying midline motor and premotor cortices preceded left-hand performance. These measurements suggest that brief, spatially distributed neural activity patterns, or "preparatory sets," in distinct cognitive, somesthetic-motor, and integrative motor areas of the human brain may be essential precursors of accurate visuomotor performance.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gevins, A S -- Morgan, N H -- Bressler, S L -- Cutillo, B A -- White, R M -- Illes, J -- Greer, D S -- Doyle, J C -- Zeitlin, G M -- New York, N.Y. -- Science. 1987 Jan 30;235(4788):580-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3810158" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Cerebral Cortex/*physiology ; Cognition/physiology ; Electroencephalography ; Electrophysiology ; Functional Laterality ; Humans ; Male ; Motor Activity/physiology ; Time Factors ; Visual Perception/physiology
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  • 183
    Publication Date: 1987-04-24
    Description: The early events in viral dissemination via the bloodstream were identified by monitoring the fate of 123I-radiolabeled reovirus after it was injected intravenously in rats. Continuous scintillation camera imaging showed that reovirus serotypes 1 and 3 were cleared from the circulation in less than 10 minutes by specific and distinct target organs. Reovirus serotype 1 accumulated predominantly in the lungs and the liver, whereas serotype 3 accumulated in the liver and the spleen with very little virus uptake by the lungs. Incubation of reovirus serotype 1 with a monoclonal antibody directed against the viral hemagglutinin before injection totally inhibited the clearance of the virus by the lungs. Similar results were obtained when viruses biolabeled with 35S were used. These results demonstrate that viruses can be rapidly transported through the bloodstream to specific target organs and that the localization of the viruses depends on the interaction between specific viral surface components and the target organ.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Verdin, E M -- Maratos-Flier, E -- Kahn, C R -- Sodoyez, J C -- Sodoyez-Goffaux, F -- De Vos, C J -- Lynn, S P -- Fields, B N -- AI 3178/AI/NIAID NIH HHS/ -- AM 01252/AM/NIADDK NIH HHS/ -- New York, N.Y. -- Science. 1987 Apr 24;236(4800):439-42.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3031817" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigen-Antibody Complex ; Iodine Radioisotopes ; Mammalian orthoreovirus 3/physiology ; Reoviridae/immunology/*physiology ; Reoviridae Infections/*microbiology ; Time Factors ; Tissue Distribution
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  • 184
    Publication Date: 1987-08-07
    Description: Human peripheral blood eosinophils, cells often associated with allergic and parasitic diseases, were maintained in vitro for at least 14 days when they were cocultured with bovine endothelial cells and for at least 7 days when cultured with either bovine or human endothelial cell-derived conditioned medium. The cocultured eosinophils became hypodense and generated about three times as much leukotriene C4 upon activation with calcium ionophore and killed about three times as many antibody-coated larvae of Schistosoma mansoni as freshly isolated normodense eosinophils. That these cells can be maintained in vitro by coculture with endothelial cells, and the surprising finding that the cocultured eosinophils have biochemical, cytotoxic, and density properties similar to those of eosinophils in patients with allergic and other disorders, will facilitate investigation of the regulation and role of these cells in health and disease.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rothenberg, M E -- Owen, W F Jr -- Silberstein, D S -- Soberman, R J -- Austen, K F -- Stevens, R L -- AI-22531/AI/NIAID NIH HHS/ -- AI-23483/AI/NIAID NIH HHS/ -- AM-01401/AM/NIADDK NIH HHS/ -- etc. -- New York, N.Y. -- Science. 1987 Aug 7;237(4815):645-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3110954" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibody-Dependent Cell Cytotoxicity ; Calcimycin/pharmacology ; Cattle ; *Cell Communication ; Cell Survival ; Cells, Cultured ; Endothelium/*cytology ; Eosinophils/*cytology ; Humans ; SRS-A/biosynthesis ; Schistosoma mansoni/immunology ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 185
    Publication Date: 1987-01-16
    Description: Digital imaging of calcium indicator signals (fura-2 fluorescence) from single cardiac cells has revealed different subcellular patterns of cytoplasmic calcium ion concentration ([Ca2+]i) that are associated with different types of cellular appearance and behavior. In any population of enzymatically isolated rat heart cells, there are mechanically quiescent cells in which [Ca2+]i is spatially uniform, constant over time, and relatively low; spontaneously contracting cells, which have an increased [Ca2+]i, but in which the spatial uniformity of [Ca2+]i is interrupted periodically by spontaneous propagating waves of high [Ca2+]i; and cells that are hypercontracted (rounded up) and that have higher levels of [Ca2+]i than the other two types. The observed cellular and subcellular heterogeneity of [Ca2+]i in isolated cells indicates that experiments performed on suspensions of cells should be interpreted with caution. The spontaneous [Ca2+]i fluctuations previously observed without spatial resolution in multicellular preparations may actually be inhomogeneous at the subcellular level.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wier, W G -- Cannell, M B -- Berlin, J R -- Marban, E -- Lederer, W J -- HL25675/HL/NHLBI NIH HHS/ -- HL29473/HL/NHLBI NIH HHS/ -- New York, N.Y. -- Science. 1987 Jan 16;235(4786):325-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3798114" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Benzofurans ; Calcium/*metabolism ; Cell Compartmentation ; Fura-2 ; In Vitro Techniques ; Myocardial Contraction ; Myocardium/*cytology/metabolism ; Rats ; Spectrometry, Fluorescence ; Time Factors
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  • 186
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-02-06
    Description: A fundamental problem in the cellular analysis of learning and memory is the identification of the neuronal substrates of long-term information storage and their relation to short-term cellular alterations. In this report, biophysical correlates of long-term sensitization of a simple withdrawal reflex in the mollusc Aplysia were examined. A voltage-clamp analysis of the sensory neurons that control the reflex, 24 hours after sensitization training, revealed a significant reduction in net outward current. The results indicate that one mechanism for the storage of long-term sensitization is the regulation of membrane currents that influence the characteristics of the action potential and the excitability of individual neurons. The results also provide insights into the relation between short- and long-term sensitization in that the biophysical loci involved in the storage of long-term sensitization appear similar to those involved in short-term sensitization.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scholz, K P -- Byrne, J H -- NS 19895/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 1987 Feb 6;235(4789):685-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2433766" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aplysia/*physiology ; Behavior, Animal/physiology ; Electric Conductivity ; Ion Channels/physiology ; Membrane Potentials ; Neurons, Afferent/*physiology ; Reflex/*physiology ; Tail/innervation ; Time Factors
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  • 187
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-10-16
    Description: Instrumental and specimen considerations pertinent to performing time-resolved x-ray diffraction on biological materials are discussed. Existing synchrotron x-ray sources, in conjunction with integrating x-ray detectors, have made millisecond diffraction experiments feasible; exposure times several orders of magnitude shorter than this will be possible with synchrotron sources now on the drawing boards. Experience gained from time-resolved studies together with order-of-magnitude estimates of specimen requirements can be used to determine the instrumental capabilities needed for various time-resolved experiments. Existing instrumental capabilities and methods of dealing with time-resolved specimens are reviewed.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gruner, S M -- GM32614/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1987 Oct 16;238(4825):305-12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Princeton University, NJ 08544.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3310232" target="_blank"〉PubMed〈/a〉
    Keywords: Particle Accelerators ; Temperature ; Time Factors ; *X-Ray Diffraction/instrumentation ; X-Rays
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  • 188
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-04-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kolata, G -- New York, N.Y. -- Science. 1987 Apr 10;236(4798):146-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3563492" target="_blank"〉PubMed〈/a〉
    Keywords: Humans ; *Metabolism ; *Physical Exertion ; Time Factors
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  • 189
    Publication Date: 1987-03-06
    Description: Under the influence of estrogen, uterine smooth muscle becomes highly excitable, generating spontaneous and prolonged bursts of action potentials. In a study of the mechanisms by which this transition in excitability occurs, polyadenylated RNA from the uteri of estrogen-treated rats was injected into Xenopus oocytes. The injected oocytes expressed a novel voltage-dependent potassium current. This current was not observed in oocytes injected with RNA from several other excitable tissues, including rat brain and uterine smooth muscle from ovariectomized rats not treated with estrogen. The activation of this current on depolarization was exceptionally slow, particularly for depolarizations from relatively negative membrane potentials. Such a slowly activating channel may play an important role in the slow, repetitive bursts of action potentials in the myometrium.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Boyle, M B -- Azhderian, E M -- MacLusky, N J -- Naftolin, F -- Kaczmarek, L K -- New York, N.Y. -- Science. 1987 Mar 6;235(4793):1221-4.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2434999" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Calcium/pharmacology ; Egtazic Acid/pharmacology ; Female ; Injections ; Ion Channels/*metabolism ; Oocytes/*metabolism ; Potassium/*metabolism ; RNA/*pharmacology ; Rats ; Rats, Inbred Strains ; Time Factors ; Uterus/*metabolism ; Xenopus
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  • 190
    Publication Date: 1987-08-07
    Description: The first human vaccines against the malaria parasite have been designed to elicit antibodies to the circumsporozoite protein of Plasmodium falciparum. However, it is not known whether any level of naturally acquired antibodies to the circumsporozoite protein can predict resistance to Plasmodium falciparum malaria. In this study, 83 adults in a malaria-endemic region of Kenya were tested for circumsporozoite antibodies and then treated for malaria. They were monitored for the development of new malaria infections for 98 days. Antibody levels, as determined by four assays in vitro, were indistinguishable between the 60 individuals who did and the 23 who did not develop parasitemia during follow-up, and there was no apparent relation between day of onset of parasitemia and level of antibodies to circumsporozoite protein. Unless immunization with sporozoite vaccines induces antibodies that are quantitatively or qualitatively superior to the circumsporozoite antibodies in these adults, it is unlikely that such antibodies will prevent infection in areas with as intense malaria transmission as western Kenya.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hoffman, S L -- Oster, C N -- Plowe, C V -- Woollett, G R -- Beier, J C -- Chulay, J D -- Wirtz, R A -- Hollingdale, M R -- Mugambi, M -- New York, N.Y. -- Science. 1987 Aug 7;237(4815):639-42.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3299709" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Antibodies/*analysis ; Antigens, Protozoan ; Antigens, Surface/*immunology ; Humans ; Kenya ; Malaria/*prevention & control ; Male ; Middle Aged ; Plasmodium falciparum/*immunology ; Prospective Studies ; *Protozoan Proteins ; Spores/immunology ; Time Factors ; *Vaccines
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  • 191
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-05-01
    Description: A large number of proteins were tested for the property of intrinsic phosphorescence in deoxygenated aqueous solution at room temperature. The majority of proteins exhibit phosphorescence under normal solution conditions. Phosphorescence lifetimes from 0.5 millisecond to 2 seconds were observed in three-fourths of the proteins tested. The lifetime appears to correlate with relative isolation of the tryptophan indole side chain from solvent. With few exceptions, proteins in general can be expected to display a phosphorescence lifetime greater than 30 microseconds. This widespread characteristic of proteins has been largely overlooked because long-lived phosphorescence is highly sensitive to quenching by low levels of dissolved oxygen in solution. Protein phosphorescence offers a new time domain and a far wider dynamic range than has been used before for photoluminescence experimentation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3438914/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3438914/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vanderkooi, J M -- Calhoun, D B -- Englander, S W -- AM 11295/AM/NIADDK NIH HHS/ -- GM 34448/GM/NIGMS NIH HHS/ -- GM 36393/GM/NIGMS NIH HHS/ -- R01 GM031847/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1987 May 1;236(4801):568-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3576185" target="_blank"〉PubMed〈/a〉
    Keywords: Fluorescence ; *Luminescence ; *Luminescent Proteins ; Oxygen/pharmacology ; Solutions ; Spectrophotometry ; Temperature ; Time Factors ; Tryptophan
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  • 192
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1987-10-16
    Description: The visual system is able to accurately represent the spatiotemporal relations among the elements of a changing visual scene as the image moves across the retinal surface. This precise spatiotemporal mapping occurs despite great variability in retinal position and conduction velocity even among retinal ganglion cells of the same physiological class-a variability that would seem to reduce the precision with which spatiotemporal information can be transmitted to central visual areas. There was a strong negative relation between the intraretinal and extraretinal conduction time for axons of individual ganglion cells of the X-cell class. The effect of this relation was to produce a nearly constant total transmission time between the soma of a retinal X cell and its central target site. Thus, the variation in the conduction velocities of retinal ganglion cell axons may ensure that, regardless of the constraints imposed by retinal topography, a precise spatiotemporal central representation of the retinal image is maintained.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stanford, L R -- EY04977/EY/NEI NIH HHS/ -- HD03352/HD/NICHD NIH HHS/ -- New York, N.Y. -- Science. 1987 Oct 16;238(4825):358-60.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Comparative Biosciences, University of Wisconsin-Madison 53705.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3659918" target="_blank"〉PubMed〈/a〉
    Keywords: Action Potentials ; Animals ; Axons/*physiology ; Cats ; Electric Stimulation ; Evoked Potentials, Visual ; *Neural Conduction ; Optic Nerve/physiology/ultrastructure ; Retina/physiology/*ultrastructure ; Retinal Ganglion Cells/*ultrastructure ; Time Factors ; Visual Perception/physiology
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  • 193
    Publication Date: 1986-12-12
    Description: A direct measurement of the avidity of the junction between a cytotoxic T lymphocyte and its target cell was achieved by using a biophysical approach. A micromanipulation technique was used to determine the force required to separate a cytotoxic T cell (human clone F1, with specificity for HLA-DRw6) from its specific target cell (JY: HLA-A2, -B7, -DR4, w6) prior to delivery of the lethal hit. The force required to separate the F1-JY pair is 1.5 X 10(4) dynes per square centimeter. This junction avidity for F1-JY pairs is 6 to 13 times greater than that for F1-F1 and JY-JY pairs; the F1-JY conjugate requires a stronger separating force and is more easily rejoined than the homologous cell pairs. This study provides an estimate of the avidity of cytotoxic T cells for their target cells and insights into the biophysical correlates of the molecular complexes formed in the interaction of cytotoxic T cells and their targets during the cytotoxic process.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sung, K L -- Sung, L A -- Crimmins, M -- Burakoff, S J -- Chien, S -- CA-13429/CA/NCI NIH HHS/ -- P01 HL 16851/HL/NHLBI NIH HHS/ -- R23 CA-37955/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 1986 Dec 12;234(4782):1405-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3491426" target="_blank"〉PubMed〈/a〉
    Keywords: *Cell Communication ; Cytotoxicity, Immunologic ; HLA-DR Antigens/immunology ; HLA-DR6 Antigen ; Humans ; Mathematics ; T-Lymphocytes, Cytotoxic/*cytology/immunology ; Time Factors
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  • 194
    Publication Date: 1986-09-05
    Description: Expression of the ras oncogene is thought to be one of the contributing events in the initiation of certain types of human cancer. To determine the cellular activities that are directly triggered by ras proteins, the early consequences of microinjection of the human H-ras proteins into quiescent rat embryo fibroblasts were investigated. Within 30 minutes to 1 hour after injection, cells show a marked increase in surface ruffles and fluid-phase pinocytosis. The rapid enhancement of membrane ruffling and pinocytosis is induced by both the proto-oncogenic and the oncogenic forms of the H-ras protein. The effects produced by the oncogenic protein persist for more than 15 hours after injection, whereas the effects of the proto-oncogenic protein are short-lived, being restricted to a 3-hour interval after injection. The stimulatory effect of the ras oncogene protein on ruffling and pinocytosis is dependent on the amount of injected protein and is accompanied by an apparent stimulation of phospholipase A2 activity. These rapid changes in cell membrane activities induced by ras proteins may represent primary events in the mechanism of action of ras proteins.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bar-Sagi, D -- Feramisco, J R -- CA07896/CA/NCI NIH HHS/ -- CA39811/CA/NCI NIH HHS/ -- GM28277/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 1986 Sep 5;233(4768):1061-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3090687" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Cycle/drug effects ; Cell Membrane/*drug effects/ultrastructure ; Cells, Cultured ; Culture Media ; DNA/biosynthesis ; GTP-Binding Proteins/*pharmacology ; Humans ; Microinjections ; Oncogene Proteins, Viral/*pharmacology ; Phospholipases A/metabolism ; Phospholipases A2 ; Phospholipids/metabolism ; Pinocytosis/*drug effects ; Rats ; Time Factors
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  • 195
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1986-12-12
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Barnes, D M -- New York, N.Y. -- Science. 1986 Dec 12;234(4782):1324-6.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2431480" target="_blank"〉PubMed〈/a〉
    Keywords: Alzheimer Disease/*diagnosis/pathology ; Animals ; Brain/pathology ; Cells, Cultured ; Glutamates/pharmacology ; Glutamic Acid ; Humans ; Ion Channels/*physiology ; Mollusca ; Neurons/drug effects ; Neurotransmitter Agents/*physiology ; Time Factors
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  • 196
    Publication Date: 1986-02-07
    Description: When the human T-cell line A3.01 is infected with HTLV-III/LAV, the virus associated with the acquired immune deficiency syndrome (AIDS), most of the cells are killed. However, a small number of cells that lack the Leu-3 surface marker survive. Under normal conditions these surviving cells do not produce virus, nor can they be infected by the virus, but they can be induced to produce virus by treatment with 5-iodo-2'-deoxyuridine. This response can be induced for as long as 3 months after the initial infection, suggesting that the cells may harbor a latent form of HTLV-III/LAV.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Folks, T -- Powell, D M -- Lightfoote, M M -- Benn, S -- Martin, M A -- Fauci, A S -- New York, N.Y. -- Science. 1986 Feb 7;231(4738):600-2.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3003906" target="_blank"〉PubMed〈/a〉
    Keywords: Acquired Immunodeficiency Syndrome/genetics/microbiology ; Cell Line ; Deltaretrovirus/*growth & development ; Humans ; Idoxuridine/pharmacology ; Models, Genetic ; T-Lymphocytes/drug effects/*microbiology ; Time Factors ; *Virus Activation/drug effects
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  • 197
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 1986-07-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kolata, G -- New York, N.Y. -- Science. 1986 Jul 25;233(4762):417-8.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3726536" target="_blank"〉PubMed〈/a〉
    Keywords: Cerebrovascular Disorders/etiology ; Humans ; Myocardial Infarction/*etiology ; Time Factors
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  • 198
    Publication Date: 1986-07-18
    Description: Addition of mouse interferon-alpha/beta (IFN) to confluent, quiescent BALB/c 3T3 (clone A31) mouse fibroblasts resulted in a block or delay in serum-induced activation of the cell cycle. It was necessary to add IFN within 6 hours after serum stimulation to inhibit nuclear labeling with [3H]thymidine. This is consistent with the time required for platelet-derived growth factor (PDGF) to induce cells to become competent to respond to additional growth factors present in platelet-poor plasma. Simultaneous addition of IFN with PDGF inhibited the PDGF-induced synthesis of a 29-kilodalton and a 35-kilodalton protein that normally occurs within 1 hour after PDGF addition. IFN also suppressed the general increase in protein synthesis that occurs by the fifth hour after PDGF addition. These results show that IFN antagonizes the action of PDGF, thereby interfering with the activation of Go cells for G1 traverse and S-phase entry.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lin, S L -- Kikuchi, T -- Pledger, W J -- Tamm, I -- CA 18213/CA/NCI NIH HHS/ -- CA 18608/CA/NCI NIH HHS/ -- CA 42713/CA/NCI NIH HHS/ -- etc. -- New York, N.Y. -- Science. 1986 Jul 18;233(4761):356-9.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3726533" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Blood ; Cell Cycle/*drug effects ; Electrophoresis, Polyacrylamide Gel ; Interferon Type I/*pharmacology ; Interphase ; Mice ; Mice, Inbred BALB C ; Molecular Weight ; Platelet-Derived Growth Factor/pharmacology ; Protein Biosynthesis ; Time Factors
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    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 199
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 1986-07-18
    Description: Protein kinase C, an enzyme that is activated by the receptor-mediated hydrolysis of inositol phospholipids, relays information in the form of a variety of extracellular signals across the membrane to regulate many Ca2+-dependent processes. At an early phase of cellular responses, the enzyme appears to have a dual effect, providing positive forward as well as negative feedback controls over various steps of its own and other signaling pathways, such as the receptors that are coupled to inositol phospholipid hydrolysis and those of some growth factors. In biological systems, a positive signal is frequently followed by immediate negative feedback regulation. Such a novel role of this protein kinase system seems to give a logical basis for clarifying the biochemical mechanism of signal transduction, and to add a new dimension essential to our understanding of cell-to-cell communication.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nishizuka, Y -- New York, N.Y. -- Science. 1986 Jul 18;233(4761):305-12.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3014651" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/metabolism ; Animals ; Blood Platelets/metabolism ; Calcimycin/pharmacology ; Calcium-Transporting ATPases/metabolism ; Carrier Proteins/metabolism ; *Cation Transport Proteins ; Cell Membrane/physiology ; Cyclic AMP/metabolism ; Diglycerides/metabolism ; Electric Conductivity ; Enzyme Activation ; Fluorescent Antibody Technique ; Isoenzymes/metabolism ; Models, Biological ; Phosphatidylinositols/*metabolism ; Potassium/metabolism ; Protein Kinase C/*metabolism ; Purkinje Cells/enzymology ; Rats ; Serotonin/blood ; Sodium/metabolism ; Sodium-Hydrogen Antiporter ; Tetradecanoylphorbol Acetate/pharmacology ; Time Factors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 200
    Publication Date: 1986-02-07
    Description: Rat optic and sciatic nerves were crushed, and 10 minutes to 3 days later nerve segments between the crushed site and the cell body were removed and assayed for posttranslational protein modification by amino acid addition. Protein modification was comparable in intact optic and sciatic nerves, but in sciatic nerves increased to 1.6 times control levels 10 minutes after crushing and reached a maximum of ten times control levels by 2 hours. In optic nerves activity was decreased throughout the time course studied. The results indicate that, in a nerve which is capable of regeneration (sciatic), protein modification by the addition of amino acids increases immediately after injury, but a nerve incapable of regeneration (optic) is incapable of activating the modification reaction. These findings may be important in understanding the reasons for the lack of a regenerative response after injury to central mammalian nerves.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shyne-Athwal, S -- Riccio, R V -- Chakraborty, G -- Ingoglia, N A -- NS19148/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 1986 Feb 7;231(4738):603-5.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/3080804" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acids/*metabolism ; Animals ; Arginine/metabolism ; Decapodiformes ; Goldfish ; Leucine/metabolism ; Lysine/metabolism ; Nerve Regeneration ; Nerve Tissue Proteins/*metabolism ; Optic Nerve/*metabolism/physiology ; Optic Nerve Injuries ; Rats ; Sciatic Nerve/injuries/*metabolism/physiology ; Time Factors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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