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  • Springer  (106,098)
  • Cell Press  (10,182)
  • Frontiers Media
  • 2015-2019  (121,352)
  • 1975-1979
  • 1940-1944
  • 2015  (121,352)
Collection
Keywords
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Years
  • 2015-2019  (121,352)
  • 1975-1979
  • 1940-1944
Year
  • 1
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    Long-Term Disaster-Prevention Strategies Based on Education (2015)
    Springer
    Details
    Publication Date: 2020-12-23
    Description: Although human behavior is the crucial factor in the degree of vulnerability and the likelihood of disasters taking place, preparedness and prevention programs are not mandatory in all countries around the world. Within the framework of UPStrat-MAFA (Urban disaster Prevention Strategies using MAcroseismic FAults), we have defined the disaster prevention strategies based on education management information and actions taken in Iceland, Portugal, Spain, and Italy. A detailed comparative study shows that compulsory school in these four participating countries is greatly unprepared with regard to hazard education, and these results are in line with worldwide studies. Moreover, when hazards are addressed, this is not done at an early age, which results in a missed chance to intervene in the noncognitive side of awareness, which decreases at later ages. To comply with the urge to take actions towards training and education at an early age, we used hands-on tools and learn-by-playing approaches in an informal learning environment. To reach the older population, the audio- visual media appears to be the best and lowest cost alternative to promote risk perception, awareness and education.
    Description: Published
    Description: 77-80
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: Disaster prevention ; Education ; Seismic hazard ; Information strategies ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 2
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    The European experience of educational seismology (2015)
    Springer
    Details
    Publication Date: 2020-11-25
    Description: This chapter provides an overview of last two decades, European experiences in educational seismology and describes the different contexts in which they have been developed. The basic idea of these educational projects is that Seismology may represent an efficient communication vehicle for teaching a wide range of basic Earth sci-ence topics through laboratory practices and educational activities. Moreover it is also an effective tool to raise in the young citizens the awareness on the earthquake risk and possible mitigation actions. In this frame several seismic stations with different technologies were installed in schools across Europe. The scientific support of re-searchers and the need to establish strong links between teachers and researchers attribute to the school an active role in the knowledge process using the scientific laboratory practice by adopting the “learning by doing” modern approach of science communication (R. Schank and C. Cleary, 1995, Engines for Education, Ed. Routledge, 248 pp). Some educational activities correlated with seismological projects are presented, following different strategies depending on the country, but all aimed at building a new way to communicate science in the schools. The new vogue is the opening toward social networks and blogs. This generalizes the concept of an educational Geoscience website making it an e-platform for science communication and multimedia data sharing, where researchers, teachers, students and education op-erators can interact and constantly be kept informed of ongoing activities and relevant events. All of these 'seismology at school' initiatives rely on the concept of school networking and will merge in the European project NERA (Network of European Research Infrastructures for Earthquake Risk Assessment and Mitigation, http://www.nera-eu.org/) where a spe-cific workpackage is dedicated to networking school seismology programs.
    Description: Published
    Description: 145-170
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: educational seismology ; educational projects ; learning by doing ; science communication ; school seismology ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 3
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    Applying the Disruption Index Procedure to Evaluate the Urban Seismic Risk in the Mt. Etna Area (Italy) (2015)
    Springer
    Details
    Publication Date: 2020-12-23
    Description: The Disruption Index is used here for the assessment of urban disruption in the Mt. Etna area after a natural disaster. The first element of the procedure is the definition of the seismic input, which is based on information about the historical seismicity and seismogenic faults. The second element is the computation of the seismic impact on the building stock and infrastructure in the region considered. Information on urban-scale vulnerability was collected and a geographic information system was used to organize the data relating to buildings and network systems (e.g., typologies, schools, strategic structures, lifelines). The central idea underlying the definition of the Disruption Index is the identification and evaluation of the impacts on a target community, considering the physical elements that contribute most to the severe disruption. The results of this study are therefore very useful for earthquake preparedness planning and for the development of strategies to minimize the risks from earthquakes. This study is a product of the European “Urban Disaster Prevention Strategies using Macroseismic Fields and Fault Sources” project (UPStrat-MAFA European project 2013).
    Description: Published
    Description: Torino
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: open
    Keywords: Seismic impact ; Disruption index ; Urban system ; Risk measures ; Mt. Etna area (Italy) ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 4
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    Towards multi-resolution global climate modeling with ECHAM6–FESOM. Part I: model formulation and mean climate (2015)
    Springer
    In:  EPIC3Climate Dynamics, Springer, 44(3), pp. 757-780, ISSN: 0930-7575
    Details
    Publication Date: 2017-01-27
    Description: A new climate model has been developed that employs a multi-resolution dynamical core for the sea ice-ocean component. In principle, the multi-resolution approach allows one to use enhanced horizontal resolution in dynamically active regions while keeping a coarse-resolution setup otherwise. The coupled model consists of the atmospheric model ECHAM6 and the finite element sea ice-ocean model (FESOM). In this study only moderate refinement of the unstructured ocean grid is applied and the resolution varies from about 25 km in the northern North Atlantic and in the tropics to about 150 km in parts of the open ocean; the results serve as a benchmark upon which future versions that exploit the potential of variable resolution can be built. Details of the formulation of the model are given and its performance in simulating observed aspects of the mean climate is described. Overall, it is found that ECHAM6–FESOM realistically simulates many aspects of the observed climate. More specifically it is found that ECHAM6–FESOM performs at least as well as some of the most sophisticated climate models participating in the fifth phase of the Coupled Model Intercomparison Project. ECHAM6–FESOM shares substantial shortcomings with other climate models when it comes to simulating the North Atlantic circulation.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 5
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    Laboratory activities for seismic and volcanic hazards education: a challenge for scientists (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Balanced information and education are fundamental prerequisites for risk prevention and preparedness. Among others, children embody our best chance to implant appropriate behaviors that will be recalled during hazardous situations and to involve adults according to a knowledge chain reaction. In this work, scientists challenge their communication skills to built a set of hands-on and learn-by-play based laboratory activities, for primary and secondary schools, addressing three major issues: (1) the location of earthquakes and volcanoes on Earth; (2) earthquakes and eruptions mechanisms; (3) earthquakes unpredictability. Students are asked to place volcanoes and earthquakes epicenters (issue 1) on a wooden plate puzzle according to Plate dynamics. To addresses eruption mechanisms (issue 2) and related hazard, we use backing soda forced blowing out from a volcano vent and suggest that a pyroclastic flow is fast, it can spread over a large area and raise high up to the stratosphere. Earthquake mechanisms (issue 2) are discussed describing the energy buildup, release, and transfer, using a wooden sticks bendand- break analogy. The display of acoustic waves caused by the breakage in different situations allows understanding of both the rupture energy and the wave attenuation. Earthquakes occurrence (issue 3) is addressed using steadily pulled blocks sliding on a frictional surface, where pins simulate asperities. These activities were tested, involving thousands of students. Discussions with students and teachers and the analysis of the answers to specific questionnaires gave us confidence that we proposed proper tools to raise risk awareness
    Description: Published
    Description: 89-93
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: Seismic and volcanic hazards, Outreach, Education ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 6
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    Cloudy with a Chance of ideas! ( Piovono idee!): an interactive learning experience on hydrogeological risk and climate change (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: On October 25th 2011 a devastating flood hit the Vara and Magra valleys in Italy and left an unforgettable scratch in the inhabitants’ minds. Cloudy with a Chance of ideas! (Piovono idee!) is an active journey of discovery and training on hydrogeological risk and climate change. Land preservation and safety of people living on it are issues, which we would like to help citizens get perception about, in order to instill awareness on the actions that can be taken towards risk mitigation. Cloudy with a Chance of ideas! stemmed from this belief, and it is the result of a collaborative planning in which primary and secondary school students, living within cities heavily hit by the flood, took actively part. Children were helped by experts and scientists to build an exhibition devoted to hydrogeological risk. Here interactive workspaces, games and educational laboratories, allow visitors explore concepts, phenomena and their consequences on land and inhabitants. Issues are addressed from a daily actions perspective, where everybody might make the difference towards sustainability and trigger good practices on natural hazards risk reduction.
    Description: Published
    Description: 121-124
    Description: 4A. Clima e Oceani
    Description: restricted
    Keywords: hydrogeological risk, climate change, prevention, environmental impact, territory. ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 7
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    Prediction of the shear wave velocity Vs from CPT and DMT at research sites (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: The paper examines the correlations to obtain rough estimates of the shear wave velocity VS from nonseismic dilatometer tests (DMT) and cone penetration tests (CPT). While the direct measurement of VS is obviously preferable, these correlations may turn out useful in various circumstances. The experimental results at six international research sites suggest that the DMT predictions of VS from the parameters ID (material index), KD (horizontal stress index), MDMT (constrained modulus) are more reliable and consistent than the CPT predictions from qc (cone resistance), presumably because of the availability, by DMT, of the stress history index KD.
    Description: Published
    Description: 83-92
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: N/A or not JCR
    Description: restricted
    Keywords: horizontal stress index ; shear wave velocity ; flat dilatometer test ; cone penetration test ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
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    Perception of risk for volcanic hazard in Indian Ocean: La Réunion Island case study. (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: In 2011 a research project on volcanic risk assessment at La Réunion Island (Project Aléa, Institute de Physique du Globe de Paris, France) was conducted in order to determine more efficient strategies to manage future volcanic crises. The project included the evaluation of volcanic scenarios through field and historical data analysis, as well as a survey on volcanic risk perception in resident population. A clear scientific information and an effective communication with public play a crucial role in risk mitigation strategies. In particular, the evaluation of the public perception during both volcanic crises and dormant periods is an important element in developing actions focused on specific social and cultural contexts. A questionnaire was developed based on the ones used in similar researches conducted on Italian active volcanoes. Items were designed to measure variables connected with personal perception of hazard and risk, trust in mitigation actions and in information received about these aspects. In addition, specific items related to the peculiarities of La Réunion Island environment were included. A total of 2,000 questionnaires were distributed taking into account factors such as the proximity to the volcano and the involvement of communities in recent volcanic emergencies. Main results coming out from this survey, if on the one hand show an adequate residents’ perception of natural hazards, on the other hand highlight their poor knowledge of the island’ active volcano, a similar lacking knowledge of emergency plan for volcanic crises, but also a high confidence in scientists to provide accurate and reliable information on volcanic risk and hazards in contrast with Local Authorities. Remarkable findings of this study assess some key elements that should be considered by the institutions in charge for defining policies aimed to volcanic risk mitigation and management of future volcanic crises.
    Description: Unpublished
    Description: 1V. Storia e struttura dei sistemi vulcanici
    Description: reserved
    Keywords: risk perception, volcanic hazards ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 9
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    Engineering Geology for Society and Territory - Volume 7: Education, Professional Ethics and Public Recognition of Engineering Geology (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: This book is one out of 8 IAEG XII Congress volumes, and deals with education and the professional ethics, which scientists, regulators, and practitioners of engineering geology inevitably have to face through the purposes, methods, limitations, and findings of their works. This volume presents contributions on the professional responsibilities of engineering geologists; the interaction of engineering geologists with other professionals; recognition of the engineering geological profession and its particular contribution to society, culture, and economy; and implications for the education of engineering geologists at tertiary level and in further education schemes. Issues treated in this volume are: the position of engineering geology within the geo-engineering profession; professional ethics and communication; resource use and re-use; managing risk in a litigious world; engineering and geological responsibility; and engineering geology at tertiary level. The Engineering Geology for Society and Territory volumes of the IAEG XII Congress held in Torino from September 15-19, 2014, analyze the dynamic role of engineering geology in our changing world and build on the four main themes of the congress: Environment, processes, issues, and approaches.
    Description: Published
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: 5A. Energia e georisorse
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: open
    Keywords: Geoethics ; Geoeducation ; Professional Ethics ; Engineering Geology ; Communication ; Society ; Risks management ; Georesources ; Geological responsibility ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book
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  • 10
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    Natural Gas Seepage (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Published
    Description: 7A. Geofisica di esplorazione
    Description: reserved
    Keywords: Gas seepage, methane ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book
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  • 11
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    Geosystemics, entropy and criticality of earthquakes: a vision of our planet and a key of access (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Earth is a system of interconnected systems, whose complexity is far from being fully understood by a reductionist approach alone. In this chapter we introduce the concept of geosystemics and the use of the entropy to characterize some aspects of the phenomena under study. We will show how entropy and criticality of the system are central to better understand the most important general features of earthquakes. We will analyze two recent seismic sequences culminated with a main-shock (2009 L’Aquila and 2012 Emilia, both in Italy) to show the potential of this approach and to understand some important characteristics of the seismicity under scrutiny.
    Description: Published
    Description: 3-20
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: restricted
    Keywords: geosystemics, earthquake, complexity ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 12
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    Geoethical aspects in the natural hazards management (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: The defence against natural hazards involves many actors with different roles: geoscientists, decision makers, local authorities, mass media, citizens. A proper management of georisks requires that each role is well-defined and governed by shared operational protocols, especially during the emergency phase, so that overlapping and misunderstanding don’t jeopardize population safety and economic activities. To achieve good results in this direction, it is necessary to undertake a careful evaluation of the limits and expectations of each component of society and the respect of legitimate aspirations and prerogatives. An effective defence system against natural hazards should be planned rationally and based on scientific data, in order to avoid alarmism among citizens, misleading sensationalism by media, careless decisions by politicians, as well as approximation in managing different phases of the risk cycle. Taking into consideration geoethical aspects related to natural hazards can be helpful to make geoscientists aware of their responsibilities towards society and to clarify the role they can play in the interaction with other actors, aiming at more efficacious actions for georisk mitigation.
    Description: Published
    Description: 59-62
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: 4V. Vulcani e ambiente
    Description: 4A. Clima e Oceani
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: restricted
    Keywords: Geoethics ; Natural hazards ; Risks ; Society ; Responsibility ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.08. Risk::05.08.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 13
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    What’s the seismic risk perception in Italy? (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Risk perception is a fundamental element in the definition and the adoption of preventive counter-measures. In order to develop effective information and risk communication strategies, the perception of risks and the influencing factors should be known. This paper presents preliminary results of a survey on seismic risk perception in Italy. The research design combines a psychometric and a cultural theoretic approach. More than 5,000 on-line tests have been compiled from January 23rd till July 25th, 2013. The data collected show that in Italy seismic risk perception is strongly underestimated; 86 on 100 Italian citizens, living in the most dangerous zone (namely Zone 1), do not have a correct perception of seismic hazard. From these observations we deem that extremely urgent measures are required in Italy to reach an effective way to communicate seismic risk"This study has benefited from funding provided by the Italian Presidenza del Consiglio dei Ministri - Dipartimento di Protezione Civile (DPC). This paper does not necessarily represent DPC official opinion and policies".
    Description: Published
    Description: 69-75
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: open
    Keywords: Risk perception ; Seismic hazard ; Hazard communication ; Seismic risk ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 14
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    Natural tritium determination in groundwater on Mt. Etna (Sicily, Italy) (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Tritium is a naturally occurring radionuclide, due to interactions of cosmic-rays with the upper layers of the atmosphere; but its presence in the environment is mainly due to residual fallout from nuclear weapons atmosphere tests, carried out from 1952 till 1980. Tritium reaches the Earth’s surface mainly in the form of precipitation, becoming part of the hydrological cycle, then the interest of tritium content analysis in drinking water is both for dosimetry and health-risk and for using tritium as a natural tracer in the groundwater circulation system. This paper presents results from a survey carried out in the Mt. Etna area (east and west flanks) and in the southern side of Nebrodi in Sicily (Italy), in order to determine tritium activity concentrations in water samples by using liquid scintillation counter. The investigated areas show quite low tritium concentrations, much below the Italian limit of 100 Bq L-1 for drinking water and even comparable with the minimum detectable activity value. The effective dose due to tritium for public drinking water consumption was also evaluated.
    Description: Published
    Description: 861-866
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: JCR Journal
    Description: restricted
    Keywords: Tritium ; Tritiated water ; Liquid scintillation ; Mt. Etna ; Drinking water ; 03. Hydrosphere::03.04. Chemical and biological::03.04.07. Radioactivity and isotopes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 15
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    Archeoseismology in Sicily: past earthquakes and effects on society (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: This work presents a review of archeological evidence of strong earthquakes occurring in Sicily at a time of Greek and Roman colonization, a period of considerable political, economic and social instability. In this historical context, the earthquake effects may have been obscured or overlooked to some extent and consequently the documentary information on ancient earthquakes, when available, is often sparse and lacking objectivity. The studied cases combine historical and archaeological data together with the evidence of structural damage to archaeological sites. Looking into past, the vocation of archaeoseismology lies in the identification of past seismic events, and particularly what the ancient society knew on earthquakes, and what kind of seismic effects produced on buildings and sites.
    Description: Unpublished
    Description: 491-504
    Description: 2T. Tettonica attiva
    Description: restricted
    Keywords: Archaeoseismology ; Historical seismicity ; 04. Solid Earth::04.06. Seismology::04.06.05. Historical seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 16
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    A comparison of surface and underground array measurements of ambient noise recorded in Naples (Italy). (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: Abstract In this study, we describe two experiments of seismic noise measurements carried out in Naples, Italy. The site allowed measurements to be obtained both at the surface and in a tunnel that is 120-m-deep. The main goal was to compare the seismic response evaluated at the surface to the in-tunnel response, through spectral, polarization, and resonance directivity analyses. In the 1 to 20 Hz frequency band, the noise level was up to 15 dB higher at the surface than in the tunnel. The polarization properties and horizontal-to-vertical spectral ratios appear not to be influenced by the tunnel geometry or by the topography. Some preferential alignments were observed in the polarization azimuths computed at the surface, which are likely to be due to local sources, rather than morphological features. The absence of directivity effects and the low noise levels in the tunnel make this site suitable for installing seismic stations. We also studied how the subsoil structure affects the seismic motion at the surface. The dispersive properties of the Rayleigh waves were investigated using the spatial autocorrelation method. A joint inversion of the dispersion data and the horizontal-to-vertical spectral ratios provided the subsurface Vs profile. The derived model has a low velocity contrast at depth, such as to generate moderate and broad H/V spectral ratio peak amplitude. The normalized spectral ratio appears more appropriate to identify the soil-resonance frequencies.
    Description: Published
    Description: 385 - 400
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: seismic noise ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 17
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    Seismic Microzonation in a Small Municipality: The Canazei Case Study (Trentino, N Italy) (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: The results of a detailed seismic microzonation study performed at Canazei (Trentino—Northern Italy) are here presented. We investigated the local seismic response of this small village using a Level 3 seismic microzonation, the most accurate according to the Italian Code of Seismic Microzonation. This method consists of gradual steps of knowledge to consider different aspects of the amplification phenomena. A multidisciplinary approach has been performed, including a local geological study, geophysical investigations, geotechnical characterization of lithologies and numerical analyses. The obtained elastic response spectra were compared to the spectra prescribed by the Italian Building Code. Our results show the geologic and geophysical subsoil heterogeneities, responsible for different local seismic responses in terms of acceleration spectra and amplification factors.
    Description: Published
    Description: 1085-1089
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: reserved
    Keywords: Seismic microzonation ; Response spectra ; Amplification factor ; Canazei ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion ; 04. Solid Earth::04.06. Seismology::04.06.06. Surveys, measurements, and monitoring ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 18
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    Geoscientific Communication Problem with Communities for Disaster Prevention and Land Planning in Peru (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: The communication process between the geoscientists and native communities in risk areas can significantly affect disaster prevention and land use planning. In Peru, the problem of disaster prevention is a fundamental policy due to unfamiliarity and deficiency of the associate information on the population. It is possible that talk of disaster prevention it will be an unlikely ideal in a country where most towns have settled on unplanned projects by the constant change and the lack of interest from the authorities in such topics. However, it is anachronistic that the rural communities and towns continue to live without a plan to enable them to improve their quality of life. The correct use of geoscience information in the mass media can help in this work. The characteristics of the enterprise in Peru require more training by professionals in the geosciences and support communication specialists. In this paper, we analyze the problem of communication for disaster prevention in Peru, with the aim of contributing to the articulation of a disaster prevention strategy.
    Description: Published
    Description: 81-83
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: 4V. Vulcani e ambiente
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: reserved
    Keywords: Communication process ; Disaster prevention ; Risk management ; Peru ; Geoethics ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.08. Risk::05.08.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 19
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    The Kongsfjorden Channel System offshore NW Svalbard: downslope sedimentary processes in a contour-current-dominated setting (2015)
    Springer
    In:  EPIC3Arktos, Springer, 1(1), ISSN: 2364-9453
    Details
    Publication Date: 2017-01-03
    Description: Submarine channel systems on and off glaciated continental margins can be up to hundreds of kilometres long, tens of kilometres wide and hundreds of metres deep. They result from repeated erosion and various downslope processes predominantly during glacial periods and can, therefore, provide valuable tools for the reconstruction of past ice-sheet dynamics. The Kongsfjorden Channel System (KCS) on the continental slope off northwest Svalbard provides evidence that downslope sedimentary processes are locally more dominant than regional along-slope sedimentation. It is a relatively short channel system (*120 km) that occurs at a large range of water depths (*250–4000 m) with slope gradients varying between 0 and 20. Multiple gullies on the Kongsfjorden Trough Mouth Fan merge to small channels that further merge to a main channel. The overall location of the channel system is controlled by variations in slope gradients and the ambient regional bathymetry. The widest and deepest incisions occur in areas of the steepest slope gradients. The KCS has probably been active since *1 Ma when glacial activity on Svalbard increased and grounded ice expanded to the shelf break off Kongsfjorden repeatedly. Activity within the system was probably highest during glacials. However, reduced activity presumably took place also during interglacials.
    Repository Name: EPIC Alfred Wegener Institut
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    Recent foraminifera in the Arctic Ocean and Kara Sea continental margin (2015)
    Springer
    In:  EPIC3Arktos, Springer, pp. 0-17
    Details
    Publication Date: 2016-02-28
    Repository Name: EPIC Alfred Wegener Institut
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    Pteropod sedimentation patterns in different water depths observed with moored sediment traps over a 4-year period at the LTER station HAUSGARTEN in eastern Fram Strait (2015)
    Springer
    In:  EPIC3Polar Biol, Springer, ISSN: 0722-4000
    Details
    Publication Date: 2015-02-10
    Description: Pteropods are important organisms in highlatitude ecosystems, and they are expected to severely suffer from climate change in the near future. In this study, sedimentation patterns of two pteropod species, the polar Limacina helicina and the subarctic boreal L. retroversa, are presented. Time series data received by moored sediment traps at the Long-Term Ecological Research (LTER) Observatory HAUSGARTEN in eastern Fram Strait were analyzed during the years 2008 to 2012. Results were derived from four different deployment depths (200, 1,250, 2,400, and 2,550 m) at two different sites (79°N 04'200E; 79°430N 04'300E). A species-specific sedimentation pattern was present at all depths and at both sites showing maximal flux rates during September/October for L. helicina and in November/December for L. retroversa. The polar L. helicina was outnumbered by L. retroversa (55–99 %) at both positions and at all depths supporting the recently observed trend toward the dominance of the subarctic boreal species. The largest decrease in pteropod abundance occurred within the mesopelagic zone (*200–1,250 m), indicating loss via microbial degradation and grazing. Pteropod carbonate (aragonite) amounted up to *75 % of the total carbonate flux at 200 m and 2–13 % of the aragonite found in the shallow traps arrived at the deep sediment traps (*160 m above the seafloor), revealing the significance of pteropods in carbonate export at Fram Strait. Our results emphasize the relevance and the need for continuation of long-term studies to detect and trace changes in pteropod abundances and community composition and thus in the vertical transport of aragonite.
    Repository Name: EPIC Alfred Wegener Institut
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    Annual changes of aerosol optical depth and Ångström exponent over Spitsbergen (2015)
    Springer
    In:  EPIC3Free Preview Impact of Climate Changes on Marine Environments, Book, Springer, 15 p., pp. 23-37, ISBN: 978-3-319-14282-1
    Details
    Publication Date: 2020-03-05
    Description: This book contributes to the current discussion on global environmental changes by discussing modifications in marine ecosystems related to global climate changes. In marine ecosystems, rising atmospheric CO2 and climate changes are associated with shifts in temperature, circulation, stratification, nutrient input, oxygen concentration and ocean acidification, which have significant biological effects on a regional and global scale. Knowing how these changes affect the distribution and abundance of plankton in the ocean currents is crucial to our understanding of how climate change impacts the marine environment. Ocean temperatures, weather and climatic changes greatly influence the amount and location of nutrients in the water column. If temperatures and currents change, the plankton production cycle may not coincide with the reproduction cycle of fish. The above changes are closely related to the changes in radiative forcing, which initiate feedback mechanisms like changes in surface temperature, circulation, and atmospheric chemistry.
    Repository Name: EPIC Alfred Wegener Institut
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    Mineral dust variability in Antarctic ice for different climate conditions (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics, Springer Briefs in Earth System Sciences, Heidelberg, Springer, pp. 89-95, ISBN: 978-3-319-00692-5
    Details
    Publication Date: 2015-04-07
    Description: This study aims to understand the dust deposition changes on the Antarctic ice sheet in different climatic stages. To this end high resolution dust concentration and size profiles from the EPICA-DML ice core over the transition from the last Glacial to the Holocene (T1) were combined with model experiments for four interglacial time slices and the Last Glacial Maximum (LGM). A strong decrease in dust concentration (factor 46) and a slight increase in dust size was observed during T1. A strong coupling between transport and intensified sources during the Glacial could be derived from the seasonal variability of concentration and size and its phase-lag. This strong coupling vanishes during the Holocene. The model simulates increased dust deposition in Antarctica for all past interglacial time slices compared to the pre-industrial period. The major cause for the increase is enhanced Southern Hemisphere dust emission, but changes in atmospheric transport are also relevant. The maximum dust deposition in Antarctica is simulated for the LGM, showing a 10-fold increase compared to preindustrial conditions.
    Repository Name: EPIC Alfred Wegener Institut
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    Cell-vertex discretization of shallow water equations on mixed unstructured meshes (2015)
    Springer
    In:  EPIC3Ocean Dynamics, Springer, 65(1), pp. 33-47, ISSN: 1616-7341
    Details
    Publication Date: 2015-02-10
    Description: Finite-volume discretizations can be formulated on unstructured meshes composed of different polygons. A staggered cell-vertex finite-volume discretization of shallow water equations is analyzed on mixed meshes composed of triangles and quads. Although triangular meshes are most flexible geometrically, quads are more efficient numerically and do not support spurious inertial modes of triangular cell- vertex discretization. Mixed meshes composed of triangles and quads combine benefits of both. In particular, triangular transitional zones can be used to join quadrilateral meshes of differing resolution. Based on a set of examples involving shallow water equations, it is shown that mixed meshes offer a viable approach provided some background biharmonic viscosity (or the biharmonic filter) is added to stabilize the triangular part of the mesh.
    Repository Name: EPIC Alfred Wegener Institut
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    Snow Accumulation In North Greenland Over The Last Millenium (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Springer Earth System Sciences, Heidelberg, Springer, 9 p., pp. 197-205, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2016-11-14
    Description: Knowledge of snow accumulation rates of the large polar ice sheets and their variability over time is crucial for mass budget studies and sea level predictions. Here we present mean long-term snow accumulation rates of 12 shallow ice cores drilled by the North Greenland traverse in the northern part of Greenland. The ice core records cover the last 500 to 1000 years. We find a trend of decreasing accumulation rate from the southwest (~180 mmWE/a) to northeast (~95 mmWE/a). Ice divide sites show higher accumulation rates but also higher variability (up to 20%) than sites off the ice divides (less than 10%). Unlike a recent modeling study our results indicate no change in the accumulation in the north of Greenland during the last 400 years
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    Bivalve Shells—Unique High-Resolution Archives of the Environmental Past (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, (Springer Earth System Sciences), Heidelberg [u.a.], Springer, 251 p., pp. 173-182, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2015-02-11
    Description: Understanding the climate of the past is essential for anticipating future climate change. Palaeoclimatic archives are the key to the past, but few marine archives (including tropical corals) combine long recording times (decades to centuries) with high temporal resolution (decadal to intra-annual). In temperate and polar regions carbonate shells can perform the equivalent function as a proxy archive as corals do in the tropics. The bivalve Arctica islandica is a particularly unique bio-archive owing to its wide distribution throughout the North Atlantic and its extreme longevity (up to 500 years). This paper exemplifies how information at intra-annual and decadal scales is derived from A. islandica shells and combined into a detailed picture of past conditions. Oxygen isotope analysis (δ18O) provides information on the intra-annual temperature cycle while frequency analysis of shell growth records identifies decadal variability such as a distinct 5-year signal, which might be linked to the North Atlantic Oscillation.
    Repository Name: EPIC Alfred Wegener Institut
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    A Sediment Budget for the Transkei Basin, Southwest Indian Ocean (2015)
    Springer
    In:  EPIC3Marine Geophysical Reseach, Springer, 36, pp. 281-291
    Details
    Publication Date: 2015-11-06
    Description: Deep sea sediment budgets can be used to constrain erosion rates in the neighboring continents from which the material was derived. Here we construct a sediment budget for the Transkei Basin, offshore South Africa using an existing seismic reflection survey and dated by correlation of seismic attributes to dated sections in nearby basins. Backstripping of the sections reveals that sediment accumulation rates fell from 110 to 11 Ma, with a possible period of rapid accumulation from 36 to 34 Ma that may be driven by strengthening of the Antarctic Bottom Water (AABW). The long term trend is linked to erosional degradation of the onshore continental escarpment, formed as a consequence of continental break-up. No change is noted at 30 Ma, coincident with proposed uplift of southern Africa driven by plume activity. The basin shows a significant increase in sediment accumulation after 11 Ma, which we interpret to reflect strengthening and rerouting of the AABW from the south into Transkei Basin, as a far field effect of the start of closure of the Indonesian Throughflow.
    Repository Name: EPIC Alfred Wegener Institut
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    Evaluation of Eemian and Holocene Climate Trends: Combining Marine Archives with Climate Modelling (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics (INTERDYNAMIC), SpringerBriefs in Earth System Sciences, Germany, Springer, 5 p., pp. 31-35, ISBN: 978-3-319-00693-2
    Details
    Publication Date: 2015-06-05
    Description: In an attempt to assess trends of Holocene sea-surface temperature (SST), two proxies have been compiled and analyzed in light of model simulations. The data reveal contrasting SST trends, depending upon the proxy used to derive Holocene SST history. To reconcile these mismatches between proxies in the estimated Holocene SST trends, it has been proposed that the Holocene evolution of orbitally-driven seasonality of the incoming radiation is the first-order driving mechanism of the observed SST trends. Such hypothesis has been further tested in numerical models of the Earth system with important implications for SST signals ultimately recorded by marine sediment cores. The analysis of model results and alkenone proxy data for the Holocene indicate a similar pattern in temperature change, but the simulated SST trends underestimate the proxy-based SST trends by a factor of two to five. SST trends based on Mg/Ca show no correspondence with model results. We explore whether the consideration of different growing seasons and depth habitats of the planktonic organisms used for temperature reconstruction could lead to a better agreement of model results with alkenone data on a regional scale. We found that invoking shifts in the living season and habitat depth can remove some of the model–data discrepancies in SST trends. Our results indicate that modeled and reconstructed temperature trends are to a large degree only qualitatively comparable, thus providing at present a challenge for the interpretation of proxy data as well as the model sensitivity to orbital forcing.
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    Social recognition in amphipods: An overview (2015)
    Springer
    In:  EPIC3Social recognition in invertebrates - The knowns and the unknowns, Springer, 16 p., pp. 85-100, ISBN: 978-3-319-17599-7
    Details
    Publication Date: 2015-06-02
    Repository Name: EPIC Alfred Wegener Institut
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    Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 647, doi:10.3389/fmicb.2014.00647.
    Description: The Southern Ocean is currently subject to intense investigations, mainly related to its importance for global biogeochemical cycles and its alarming rate of warming in response to climate change. Microbes play an essential role in the functioning of this ecosystem and are the main drivers of the biogeochemical cycling of elements. Yet, the diversity and abundance of microorganisms in this system remain poorly studied, in particular with regards to changes along environmental gradients. Here, we used amplicon sequencing of 16S rRNA gene tags using primers covering both Bacteria and Archaea to assess the composition and diversity of the microbial communities from four sampling depths (surface, the maximum and minimum of the oxygen concentration, and near the seafloor) at 10 oceanographic stations located in Bransfield Strait [northwest of the Antarctic Peninsula (AP)] and near the sea ice edge (north of the AP). Samples collected near the seafloor and at the oxygen minimum exhibited a higher diversity than those from the surface and oxygen maximum for both bacterial and archaeal communities. The main taxonomic groups identified below 100 m were Thaumarchaeota, Euryarchaeota and Proteobacteria (Gamma-, Delta-, Beta-, and Alphaproteobacteria), whereas in the mixed layer above 100 m Bacteroidetes and Proteobacteria (mainly Alpha- and Gammaproteobacteria) were found to be dominant. A combination of environmental factors seems to influence the microbial community composition. Our results help to understand how the dynamic seascape of the Southern Ocean shapes the microbial community composition and set a baseline for upcoming studies to evaluate the response of this ecosystem to future changes.
    Description: This work was supported by the Brazilian National Counsel of Technological and Scientific Development (Polar Canion CNPq 556848/2009-8, ProOasis CNPq 565040/2010-3, Interbiota CNPq 407889/2013-2 and INCT-MAR-COI). Alex Enrich-Prast received a CNPq Productivity fellowship. Camila N. Signori was supported by a WHOI Mary Sears Visitor Award (for the microbial community analyses) and by the Brazilian Federal Agency for Support and Evaluation of Graduate Education (CAPES) for the “Doctorate Sandwich” scholarship (n. 18835/12-0).
    Keywords: Antarctica ; Pyrosequencing ; Microbial community structure ; Environmental factors ; Microbial oceanography ; Climate change
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    The gut microbiota of rural Papua New Guineans : composition, diversity patterns, and ecological processes (2015)
    Cell Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cell Reports 11 (2015): 1-12, doi:10.1016/j.celrep.2015.03.049.
    Description: Although recent research revealed an impact of westernization on diversity and composition of the human gut microbiota, the exact consequences on metacommunity characteristics are insufficiently understood, and the underlying ecological mechanisms have not been elucidated. Here, we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity, lower inter-individual variation, vastly different abundance profiles, and bacterial lineages undetectable in US residents. A quantification of the ecological processes that govern community assembly identified bacterial dispersal as the dominant process that shapes the microbiome in PNG but not in the US. These findings suggest that the microbiome alterations detected in industrialized societies might arise from modern lifestyle factors limiting bacterial dispersal, which has implications for human health and the development of strategies aimed to redress the impact of westernization.
    Description: This study was partly funded by BioGaia AB. BioGaia had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. A portion of this research is part of the Microbiomes in Transition Initiative at Pacific Northwest National Laboratory (PNNL). This research was conducted under the Laboratory Directed Research and Development Program at PNNL, a multi-program national laboratory operated by Battelle for the US Department of Energy under contract DE-AC05-76RL01830.
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    Character, distribution, and ecological significance of storm wave-induced scour in Rhode Island Sound, USA (2015)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Geo-Marine Letters 35 (2015): 135-144, doi:10.1007/s00367-014-0392-0.
    Description: Multibeam bathymetry, collected during NOAA hydrographic surveys in 2008 and 2009, is coupled with USGS data from sampling and photographic stations to map the seabed morphology and composition of Rhode Island Sound along the US Atlantic coast, and to provide information on sediment transport and benthic habitats. Patchworks of scour depressions cover large areas on seaward-facing slopes and bathymetric highs in the sound. These depressions average 0.5–0.8 m deep and occur in water depths reaching as much as 42 m. They have relatively steep well-defined sides and coarser-grained floors, and vary strongly in shape, size, and configuration. Some individual scour depressions have apparently expanded to combine with adjacent depressions, forming larger eroded areas that commonly contain outliers of the original seafloor sediments. Where cobbles and scattered boulders are present on the depression floors, the muddy Holocene sands have been completely removed and the winnowed relict Pleistocene deposits exposed. Low tidal-current velocities and the lack of obstacle marks suggest that bidirectional tidal currents alone are not capable of forming these features. These depressions are formed and maintained under high-energy shelf conditions owing to repetitive cyclic loading imposed by high-amplitude, long-period, storm-driven waves that reduce the effective shear strength of the sediment, cause resuspension, and expose the suspended sediments to erosion by wind-driven and tidal currents. Because epifauna dominate on gravel floors of the depressions and infauna are prevalent in the finer-grained Holocene deposits, it is concluded that the resultant close juxtaposition of silty sand-, sand-, and gravel-dependent communities promotes regional faunal complexity. These findings expand on earlier interpretations, documenting how storm wave-induced scour produces sorted bedforms that control much of the benthic geologic and biologic diversity in Rhode Island Sound.
    Description: This work was supported by the Coastal and Marine Geology Program of the U.S. Geological Survey and the Atlantic Hydrographic Branch of the National Oceanic and Atmospheric Administration.
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    Long-term forest soil warming alters microbial communities in temperate forest soils (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 104, doi:10.3389/fmicb.2015.00104.
    Description: Soil microbes are major drivers of soil carbon cycling, yet we lack an understanding of how climate warming will affect microbial communities. Three ongoing field studies at the Harvard Forest Long-term Ecological Research (LTER) site (Petersham, MA) have warmed soils 5°C above ambient temperatures for 5, 8, and 20 years. We used this chronosequence to test the hypothesis that soil microbial communities have changed in response to chronic warming. Bacterial community composition was studied using Illumina sequencing of the 16S ribosomal RNA gene, and bacterial and fungal abundance were assessed using quantitative PCR. Only the 20-year warmed site exhibited significant change in bacterial community structure in the organic soil horizon, with no significant changes in the mineral soil. The dominant taxa, abundant at 0.1% or greater, represented 0.3% of the richness but nearly 50% of the observations (sequences). Individual members of the Actinobacteria, Alphaproteobacteria and Acidobacteria showed strong warming responses, with one Actinomycete decreasing from 4.5 to 1% relative abundance with warming. Ribosomal RNA copy number can obfuscate community profiles, but is also correlated with maximum growth rate or trophic strategy among bacteria. Ribosomal RNA copy number correction did not affect community profiles, but rRNA copy number was significantly decreased in warming plots compared to controls. Increased bacterial evenness, shifting beta diversity, decreased fungal abundance and increased abundance of bacteria with low rRNA operon copy number, including Alphaproteobacteria and Acidobacteria, together suggest that more or alternative niche space is being created over the course of long-term warming.
    Description: This work was supported by funding from the University of Massachusetts Amherst to DeAngelis and the National Science Foundation Long-term Ecological Research (LTER) Program.
    Keywords: Climate change ; Microbial ecology ; Ribosomal RNA ; rrn operon copy number ; Trophic strategy
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    Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 90, doi:10.3389/fmicb.2015.00090.
    Description: Tropical smallholder agriculture is undergoing rapid transformation in nutrient cycling pathways as international development efforts strongly promote greater use of mineral fertilizers to increase crop yields. These changes in nutrient availability may alter the composition of microbial communities with consequences for rates of biogeochemical processes that control nutrient losses to the environment. Ecological theory suggests that altered microbial diversity will strongly influence processes performed by relatively few microbial taxa, such as denitrification and hence nitrogen losses as nitrous oxide, a powerful greenhouse gas. Whether this theory helps predict nutrient losses from agriculture depends on the relative effects of microbial community change and increased nutrient availability on ecosystem processes. We find that mineral and organic nutrient addition to smallholder farms in Kenya alters the taxonomic and functional diversity of soil microbes. However, we find that the direct effects of farm management on both denitrification and carbon mineralization are greater than indirect effects through changes in the taxonomic and functional diversity of microbial communities. Changes in functional diversity are strongly coupled to changes in specific functional genes involved in denitrification, suggesting that it is the expression, rather than abundance, of key functional genes that can serve as an indicator of ecosystem process rates. Our results thus suggest that widely used broad summary statistics of microbial diversity based on DNA may be inappropriate for linking microbial communities to ecosystem processes in certain applied settings. Our results also raise doubts about the relative control of microbial composition compared to direct effects of management on nutrient losses in applied settings such as tropical agriculture.
    Description: SAW, MA, CN, and CAP were supported by NSF PIRE grant OISE-0968211. GeoChip analysis was supported by the Office of the Vice President for Research at the University of Oklahoma and NSF MacroSystems Biology program EF-1065844 to JZ.
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    Presynaptic nanodomains : a tale of two synapses (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Cellular Neuroscience 8 (2015): 455, doi:10.3389/fncel.2014.00455.
    Description: Here we summarize the evidence from two “giant” presynaptic terminals—the squid giant synapse and the mammalian calyx of Held—supporting the involvement of nanodomain calcium signals in triggering of neurotransmitter release. At the squid synapse, there are three main lines of experimental evidence for nanodomain signaling. First, changing the size of the unitary calcium channel current by altering external calcium concentration causes a non-linear change in transmitter release, while changing the number of open channels by broadening the presynaptic action potential causes a linear change in release. Second, low-affinity calcium indicators, calcium chelators, and uncaging of calcium all suggest that presynaptic calcium concentrations are as high as hundreds of micromolar, which is more compatible with a nanodomain type of calcium signal. Finally, neurotransmitter release is much less affected by the slow calcium chelator, ethylene glycol tetraacetic acid (EGTA), in comparison to the rapid chelator 1,2-bis(o-aminophenoxy)ethane-N,N,N’,N’-tetraacetic acid (BAPTA). Similarly, as the calyx of Held synapse matures, EGTA becomes less effective in attenuating transmitter release while the number of calcium channels required to trigger a single fusion event declines. This suggests a developmental transformation of microdomain to nanodomain coupling between calcium channels and transmitter release. Calcium imaging and uncaging experiments, in combination with simulations of calcium diffusion, indicate the peak calcium concentration seen by presynaptic calcium sensors reaches at least tens of micromolar at the calyx of Held. Taken together, data from these provide a compelling argument that nanodomain calcium signaling gates very rapid transmitter release.
    Description: This work was supported by a CRP grant from the National Research Foundation of Singapore and by the World Class Institute (WCI) Program of the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology of Korea (MEST) (NRF Grant Number: WCI 2009-003) (to George J. Augustine), and by Operating Grants from the Canadian Institutes of Health Research (MOP-77610, MOP-81159, MOP-14692, VIH-105441) and Canada Research Chair (to Lu-Yang Wang).
    Keywords: Neurotransmitter release ; Calcium signaling ; Calcium channels ; Presynaptic terminals ; Synaptic vesicle trafficking
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    Heaving modes in the world oceans (2015)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Climate Dynamics 45 (2015): 3563-3591, doi:10.1007/s00382-015-2557-6.
    Description: Part of climate changes on decadal time scales can be interpreted as the result of adiabatic motions associated with the adjustment of wind-driven circulation, i.e., the heaving of the isopycnal surfaces. Heat content changes in the ocean, including hiatus of global surface temperature and other phenomena, can be interpreted in terms of heaving associated with adjustment of wind-driven circulation induced by decadal variability of wind. A simple reduced gravity model is used to examine the consequence of adiabatic adjustment of the wind-driven circulation. Decadal changes in wind stress forcing can induce three-dimensional redistribution of warm water in the upper ocean. In particular, wind stress change can generate baroclinic modes of heat content anomaly in the vertical direction; in fact, changes in stratification observed in the ocean may be induced by wind stress change at local or in the remote parts of the world oceans. Intensification of the equatorial easterly can induce cooling in the upper layer and warming in the subsurface layer. The combination of this kind of heat content anomaly with the general trend of warming of the whole water column under the increasing greenhouse effect may offer an explanation for the hiatus of global surface temperature and the accelerating subsurface warming over the past 10–15 years. Furthermore, the meridional transport of warm water in the upper ocean can lead to sizeable transient meridional overturning circulation, poleward heat flux and vertical heat flux. Thus, heaving plays a key role in the oceanic circulation and climate.
    Keywords: Adiabatic motions ; Heaving ; Subtropical and subpolar gyres ; Southern oceans ; Baroclinic modes of heating content anomaly ; Wind-driven circulation ; Climate variability of heat content
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    Combined culture-based and culture-independent approaches provide insights into diversity of jakobids, an extremely plesiomorphic eukaryotic lineage (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 1288, doi:10.3389/fmicb.2015.01288.
    Description: We used culture-based and culture-independent approaches to discover diversity and ecology of anaerobic jakobids (Excavata: Jakobida), an overlooked, deep-branching lineage of free-living nanoflagellates related to Euglenozoa. Jakobids are among a few lineages of nanoflagellates frequently detected in anoxic habitats by PCR-based studies, however only two strains of a single jakobid species have been isolated from those habitats. We recovered 712 environmental sequences and cultured 21 new isolates of anaerobic jakobids that collectively represent at least ten different species in total, from which four are uncultured. Two cultured species have never been detected by environmental, PCR-based methods. Surprisingly, culture-based and culture-independent approaches were able to reveal a relatively high proportion of overall species diversity of anaerobic jakobids—60 or 80%, respectively. Our phylogenetic analyses based on SSU rDNA and six protein-coding genes showed that anaerobic jakobids constitute a clade of morphologically similar, but genetically and ecologically diverse protists—Stygiellidae fam. nov. Our investigation combines culture-based and environmental molecular-based approaches to capture a wider extent of species diversity and shows Stygiellidae as a group that ordinarily inhabits anoxic, sulfide- and ammonium-rich marine habitats worldwide.
    Description: This work was supported by grants from the Czech Science Foundation (project GA14-14105S), the Grant Agency of Charles University (project 301711), Charles University Specific Research SVV 260208/2015. VE and MP acknowledge support from NSF OCE-0849578 and OCE-0326175 for DHAB and Cariaco data. Unpublished data from Saanich Inlet were generously provided by Steven Hallam whose long-term research at this site is made possible through funding from the Tula Foundation-funded Centre for Microbial Diversity and Evolution, the Natural Sciences and Engineering Research Council of Canada, the Canada Foundation for Innovation, and the Canadian Institute for Advanced Research for Saanich Inlet data.
    Keywords: Cryptic species ; Environmental clones ; Marine communities ; Species diversity ; Anaerobic protists
    Repository Name: Woods Hole Open Access Server
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    Microbial- and thiosulfate-mediated dissolution of mercury sulfide minerals and transformation to gaseous mercury (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 596, doi:10.3389/fmicb.2015.00596.
    Description: Mercury (Hg) is a toxic heavy metal that poses significant environmental and human health risks. Soils and sediments, where Hg can exist as the Hg sulfide mineral metacinnabar (β-HgS), represent major Hg reservoirs in aquatic environments. Metacinnabar has historically been considered a sink for Hg in all but severely acidic environments, and thus disregarded as a potential source of Hg back to aqueous or gaseous pools. Here, we conducted a combination of field and laboratory incubations to identify the potential for metacinnabar as a source of dissolved Hg within near neutral pH environments and the underpinning (a)biotic mechanisms at play. We show that the abundant and widespread sulfur-oxidizing bacteria of the genus Thiobacillus extensively colonized metacinnabar chips incubated within aerobic, near neutral pH creek sediments. Laboratory incubations of axenic Thiobacillus thioparus cultures led to the release of metacinnabar-hosted Hg(II) and subsequent volatilization to Hg(0). This dissolution and volatilization was greatly enhanced in the presence of thiosulfate, which served a dual role by enhancing HgS dissolution through Hg complexation and providing an additional metabolic substrate for Thiobacillus. These findings reveal a new coupled abiotic-biotic pathway for the transformation of metacinnabar-bound Hg(II) to Hg(0), while expanding the sulfide substrates available for neutrophilic chemosynthetic bacteria to Hg-laden sulfides. They also point to mineral-hosted Hg as an underappreciated source of gaseous elemental Hg to the environment.
    Description: This work was supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-0644491 awarded to AV.
    Keywords: Mercury ; Metacinnabar ; Sulfur chemosynthesis ; Thiobacillus ; Thiosulfate ; Mercury sulfide dissolution ; Sulfur metabolism ; Sulfur oxidation
    Repository Name: Woods Hole Open Access Server
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    Quantifying the residence time and flushing characteristics of a shallow, back-barrier estuary : application of hydrodynamic and particle tracking models (2015)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Estuaries and Coasts 38 (2015): 1719-1734, doi:10.1007/s12237-014-9885-3.
    Description: Estuarine residence time is a major driver of eutrophication and water quality. Barnegat Bay-Little Egg Harbor (BB-LEH), New Jersey, is a lagoonal back-barrier estuary that is subject to anthropogenic pressures including nutrient loading, eutrophication, and subsequent declines in water quality. A combination of hydrodynamic and particle tracking modeling was used to identify the mechanisms controlling flushing, residence time, and spatial variability of particle retention. The models demonstrated a pronounced northward subtidal flow from Little Egg Inlet in the south to Pt. Pleasant Canal in the north due to frictional effects in the inlets, leading to better flushing of the southern half of the estuary and particle retention in the northern estuary. Mean residence time for BB-LEH was 13 days but spatial variability was between ∼0 and 30 days depending on the initial particle location. Mean residence time with tidal forcing alone was 24 days (spatial variability between ∼0 and 50 days); the tides were relatively inefficient in flushing the northern end of the Bay. Scenarios with successive exclusion of physical processes from the models revealed that meteorological and remote offshore forcing were stronger drivers of exchange than riverine inflow. Investigations of water quality and eutrophication should take into account spatial variability in hydrodynamics and residence time in order to better quantify the roles of nutrient loading, production, and flushing.
    Description: Funding was provided by the New Jersey Department of Environmental Protection and the Coastal and Marine Geology Program of the U.S. Geological Survey.
    Keywords: Hydrodynamic modeling ; Residence time ; Particle tracking ; Back-barrier estuaries ; Eutrophication
    Repository Name: Woods Hole Open Access Server
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    Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 901, doi:10.3389/fmicb.2015.00901.
    Description: Many deep-sea hydrothermal vent systems are regularly impacted by volcanic eruptions, leaving fresh basalt where abundant animal and microbial communities once thrived. After an eruption, microbial biofilms are often the first visible evidence of biotic re-colonization. The present study is the first to investigate microbial colonization of newly exposed basalt surfaces in the context of vent fluid chemistry over an extended period of time (4–293 days) by deploying basalt blocks within an established diffuse-flow vent at the 9°50′ N vent field on the East Pacific Rise. Additionally, samples obtained after a recent eruption at the same vent field allowed for comparison between experimental results and those from natural microbial re-colonization. Over 9 months, the community changed from being composed almost exclusively of Epsilonproteobacteria to a more diverse assemblage, corresponding with a potential expansion of metabolic capabilities. The process of biofilm formation appears to generate similar surface-associated communities within and across sites by selecting for a subset of fluid-associated microbes, via species sorting. Furthermore, the high incidence of shared operational taxonomic units over time and across different vent sites suggests that the microbial communities colonizing new surfaces at diffuse-flow vent sites might follow a predictable successional pattern.
    Description: This work was partly supported by grants from the US National Science Foundation to SS (OCE-0452333, 1136727), to TS (OCE-0117117, 0525907, 0961186, 1043064, 0327261, 1131620), to WS and KD (1434798), as well as a grant by the WHOI Deep Ocean Exploration Institute to SB, TS, and SS.
    Keywords: Hydrothermal vents ; Colonization ; Species sorting ; Settlement ; Volcanic eruption ; 16S rRNA ; Epsilonproteobacteria ; Disturbance
    Repository Name: Woods Hole Open Access Server
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    Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 605, doi:10.3389/fmicb.2014.00605.
    Description: Some of the most extreme marine habitats known are the Mediterranean deep hypersaline anoxic basins (DHABs; water depth ∼3500 m). Brines of DHABs are nearly saturated with salt, leading many to suspect they are uninhabitable for eukaryotes. While diverse bacterial and protistan communities are reported from some DHAB water-column haloclines and brines, the existence and activity of benthic DHAB protists have rarely been explored. Here, we report findings regarding protists and fungi recovered from sediments of three DHAB (Discovery, Urania, L’ Atalante) haloclines, and compare these to communities from sediments underlying normoxic waters of typical Mediterranean salinity. Halocline sediments, where the redoxcline impinges the seafloor, were studied from all three DHABs. Microscopic cell counts suggested that halocline sediments supported denser protist populations than those in adjacent control sediments. Pyrosequencing analysis based on ribosomal RNA detected eukaryotic ribotypes in the halocline sediments from each of the three DHABs, most of which were fungi. Sequences affiliated with Ustilaginomycotina Basidiomycota were the most abundant eukaryotic signatures detected. Benthic communities in these DHABs appeared to differ, as expected, due to differing brine chemistries. Microscopy indicated that only a low proportion of protists appeared to bear associated putative symbionts. In a considerable number of cases, when prokaryotes were associated with a protist, DAPI staining did not reveal presence of any nuclei, suggesting that at least some protists were carcasses inhabited by prokaryotic scavengers.
    Description: K. Kormas was partially supported by the University of Thessaly through a sabbatical in 2013. Supported by NSF grants OCE-0849578 to Virginia P. Edgcomb and Joan M. Bernhard and OCE-1061391 to Joan M. Bernhard and Virginia P. Edgcomb.
    Keywords: Eukaryote ; DHABs ; Discovery ; Urania, L’ Atalante ; Diversity ; rRNA
    Repository Name: Woods Hole Open Access Server
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    Rapid and gradual modes of aerosol trace metal dissolution in seawater (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2015): 794, doi:10.3389/fmicb.2014.00794.
    Description: Atmospheric deposition is a major source of trace metals in marine surface waters and supplies vital micronutrients to phytoplankton, yet measured aerosol trace metal solubility values are operationally defined, and there are relatively few multi-element studies on aerosol-metal solubility in seawater. Here we measure the solubility of aluminum (Al), cadmium (Cd), cobalt (Co), copper (Cu), iron (Fe), manganese (Mn), nickel (Ni), lead (Pb), and zinc (Zn) from natural aerosol samples in seawater over a 7 days period to (1) evaluate the role of extraction time in trace metal dissolution behavior and (2) explore how the individual dissolution patterns could influence biota. Dissolution behavior occurs over a continuum ranging from rapid dissolution, in which the majority of soluble metal dissolved immediately upon seawater exposure (Cd and Co in our samples), to gradual dissolution, where metals dissolved slowly over time (Zn, Mn, Cu, and Al in our samples). Additionally, dissolution affected by interactions with particles was observed in which a decline in soluble metal concentration over time occurred (Fe and Pb in our samples). Natural variability in aerosol chemistry between samples can cause metals to display different dissolution kinetics in different samples, and this was particularly evident for Ni, for which samples showed a broad range of dissolution rates. The elemental molar ratio of metals in the bulk aerosols was 23,189Fe: 22,651Al: 445Mn: 348Zn: 71Cu: 48Ni: 23Pb: 9Co: 1Cd, whereas the seawater soluble molar ratio after 7 days of leaching was 11Fe: 620Al: 205Mn: 240Zn: 20Cu: 14Ni: 9Pb: 2Co: 1Cd. The different kinetics and ratios of aerosol metal dissolution have implications for phytoplankton nutrition, and highlight the need for unified extraction protocols that simulate aerosol metal dissolution in the surface ocean.
    Description: This work was supported by NSF-OCE grant 0850467 to Adina Paytan, NSF-OCE grant 1233261 to Mak A. Saito, and NATO Science for Peace Grant to Adina Paytan and Anton F. Post (SfP 982161). Katherine R. M. Mackey was supported by a National Science Foundation Postdoctoral Research Fellowship in Biology (Grant No. NSF 1103575) and Chia-Te Chien by an international graduate student fellowship from the ministry of education, Taiwan.
    Keywords: Aerosols ; Atmospheric deposition ; Phytoplankton ; Trace metals ; Ligands
    Repository Name: Woods Hole Open Access Server
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    The transcriptional response of microbial communities in thawing Alaskan permafrost soils (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 197, doi:10.3389/fmicb.2015.00197.
    Description: Thawing of permafrost soils is expected to stimulate microbial decomposition and respiration of sequestered carbon. This could, in turn, increase atmospheric concentrations of greenhouse gasses, such as carbon dioxide and methane, and create a positive feedback to climate warming. Recent metagenomic studies suggest that permafrost has a large metabolic potential for carbon processing, including pathways for fermentation and methanogenesis. Here, we performed a pilot study using ultrahigh throughput Illumina HiSeq sequencing of reverse transcribed messenger RNA to obtain a detailed overview of active metabolic pathways and responsible organisms in up to 70 cm deep permafrost soils at a moist acidic tundra location in Arctic Alaska. The transcriptional response of the permafrost microbial community was compared before and after 11 days of thaw. In general, the transcriptional profile under frozen conditions suggests a dominance of stress responses, survival strategies, and maintenance processes, whereas upon thaw a rapid enzymatic response to decomposing soil organic matter (SOM) was observed. Bacteroidetes, Firmicutes, ascomycete fungi, and methanogens were responsible for largest transcriptional response upon thaw. Transcripts indicative of heterotrophic methanogenic pathways utilizing acetate, methanol, and methylamine were found predominantly in the permafrost table after thaw. Furthermore, transcripts involved in acetogenesis were expressed exclusively after thaw suggesting that acetogenic bacteria are a potential source of acetate for acetoclastic methanogenesis in freshly thawed permafrost. Metatranscriptomics is shown here to be a useful approach for inferring the activity of permafrost microbes that has potential to improve our understanding of permafrost SOM bioavailability and biogeochemical mechanisms contributing to greenhouse gas emissions as a result of permafrost thaw.
    Description: This work was fostered by grants from WHOI's Arctic Research Initiative to MJLC and AS, as well as a Center for Dark Energy Biosphere Investigations (CDEBI) grant OCE-0939564 to WDO.
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    Ontology-based mediation of OGC catalogue service for the Web requests: a virtual solution for integrating coastal web atlases. (2015)
    Springer | Berlin
    Details
    Publication Date: 2021-05-19
    Description: In recent years significant momentum has occurred in the development of Internet resources for decision makers and scientists interested in the coast. Chief among these has been the development of coastal web atlases (CWAs). While multiple benefits are derived from these tailor-made atlases (e.g., speedy access to multiple sources of coastal data and information), the potential exists to derive added value from the integration of disparate CWAs, to optimize decision making at a variety of levels and across themes. This paper describes the development of a semantic mediator prototype to provide a common access point to coastal data, maps and information from distributed CWAs. The prototype showcases how ontologies and ontology mappings can be used to integrate different heterogeneous and autonomous atlases, using the Open Geospatial Consortium’s Catalogue Services for the Web.
    Description: Published
    Keywords: Coastal web atlas ; Coastal atlas ; Data semantics ; Semantic web technologies ; Information retrieval ; GIS ; Ontologies ; Catalogue services for the web (CSW) ; Mediation
    Repository Name: AquaDocs
    Type: Conference Material , Refereed
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    North-West African Hydrologic Changes in the Holocene: A Combined Isotopic Data and Model Approach (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics (INTERDYNAMIC), (SpringerBriefs in Earth System Sciences), Heidelberg, Springer, 139 p., pp. 109-114, ISBN: 978-3-319-00692-5, ISSN: 2191-589X
    Details
    Publication Date: 2015-02-04
    Description: To achieve a better understanding of the hydrologic evolution of the North-West (NW) African monsoon system during the Holocene, in particular during inferred abrupt climate changes at the end of the African Humid Period (AHP), we investigated terrigenous plant lipids deposited in marine sediments offshore NW Africa. Changes in rainfall amount were estimated by compound-specific hydrogen isotope (δD) analyses. The spatial gradient of rainfall isotopic compositions is reflected in marine surface sediments. δD changes in plant waxes covering the last 100 years confirm the observed decrease in rainfall during the late twentieth century Sahel drought, and thus can be used for a quantitative calibration of δD and pre- cipitation. δD changes in sedimentary plant waxes show no abrupt change at the end of the AHP suggesting a gradual precipitation decline. These results are supported by Holocene climate simulations using a coupled atmosphere-land surface model, which includes an explicit modeling of isotopic fractionation within the hydrological cycle.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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    Introduction to Modern Fortran for Earth System Sciences (2015)
    Springer
    In:  EPIC3Heidelberg, Springer, 250 p., ISBN: 978-3-642-37008-3
    Details
    Publication Date: 2015-06-05
    Description: This work provides a short "getting started" guide to Fortran 90/95. The main target audience consists of newcomers to the field of numerical computation within Earth system sciences (students, researchers or scientific programmers). Furthermore, readers accustomed to other programming languages may also benefit from this work, by discovering how some programming techniques they are familiar with map to Fortran 95.
    Repository Name: EPIC Alfred Wegener Institut
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    Holocene Environmental Variability in the Arctic Gateway (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics (INTERDYNAMIC), Integrated Analysis of Interglacial Climate Dynamics (INTERDYNAMIC), Heidelberg, Springer, pp. 37-42, ISBN: 978-3-319-00692-5, ISSN: 2191-589X
    Details
    Publication Date: 2016-05-13
    Description: Environmental changes in the region connecting the Arctic Ocean and the northern North Atlantic were studied for the last 9,000 years (9 ka) by a combination of proxy-based paleoceanographic reconstructions as well as transient and time-slice simulations with climate models. Today, the area is perennially ice-covered in the west and ice-free in the east. Results show that sea-ice conditions were highly variable on short timescales in the last 9 ka. However, sea-ice proxies reveal an overall eastward movement of the sea-ice margin, in line with a decreasing influence of warm Atlantic Water advected to the Arctic Ocean. These cooling trends were rapidly reversed 100 years ago and replaced by the general warming in the Arctic. Model results show a consistently high freshwater input to the Arctic Ocean during the last 7 ka. The signal is robust against the Holocene cooling trend, however sensitive towards the warming trend of the last century. These results may play a role in the observed Arctic changes.
    Repository Name: EPIC Alfred Wegener Institut
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    Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 358, doi:10.3389/fmicb.2015.00358.
    Description: Despite extensive direct sequencing efforts and advanced analytical tools, reconstructing microbial genomes from soil using metagenomics have been challenging due to the tremendous diversity and relatively uniform distribution of genomes found in this system. Here we used enrichment techniques in an attempt to decrease the complexity of a soil microbiome prior to sequencing by submitting it to a range of physical and chemical stresses in 23 separate microcosms for 4 months. The metagenomic analysis of these microcosms at the end of the treatment yielded 540 Mb of assembly using standard de novo assembly techniques (a total of 559,555 genes and 29,176 functions), from which we could recover novel bacterial genomes, plasmids and phages. The recovered genomes belonged to Leifsonia (n = 2), Rhodanobacter (n = 5), Acidobacteria (n = 2), Sporolactobacillus (n = 2, novel nitrogen fixing taxon), Ktedonobacter (n = 1, second representative of the family Ktedonobacteraceae), Streptomyces (n = 3, novel polyketide synthase modules), and Burkholderia (n = 2, includes mega-plasmids conferring mercury resistance). Assembled genomes averaged to 5.9 Mb, with relative abundances ranging from rare (〈0.0001%) to relatively abundant (〉0.01%) in the original soil microbiome. Furthermore, we detected them in samples collected from geographically distant locations, particularly more in temperate soils compared to samples originating from high-latitude soils and deserts. To the best of our knowledge, this study is the first successful attempt to assemble multiple bacterial genomes directly from a soil sample. Our findings demonstrate that developing pertinent enrichment conditions can stimulate environmental genomic discoveries that would have been impossible to achieve with canonical approaches that focus solely upon post-sequencing data treatment.
    Description: This research was supported by the French National Research Agency (Agence National de Recherche) project Metasoil (Projet ANR-08-GENM-025). TOD was funded by the Rhone-Alpes Région. LM was supported with a PhD fellowship from the Région Rhône-Alpes.
    Keywords: Rare biosphere ; Soil ; Metagenomics ; Environmental genomics ; Plasmids ; Phages
    Repository Name: Woods Hole Open Access Server
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    Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 646, doi:10.3389/fmicb.2014.00646.
    Description: Rising temperatures and changing winds drive the expansion of the highly productive polynyas (open water areas surrounded by sea ice) abutting the Antarctic continent. Phytoplankton blooms in polynyas are often dominated by the haptophyte Phaeocystis antarctica, and they generate the organic carbon that enters the resident microbial food web. Yet, little is known about how Phaeocystis blooms shape bacterial community structures and carbon fluxes in these systems. We identified the bacterial communities that accompanied a Phaeocystis bloom in the Amundsen Sea polynya during the austral summers of 2007–2008 and 2010–2011. These communities are distinct from those determined for the Antarctic Circumpolar Current (ACC) and off the Palmer Peninsula. Diversity patterns for most microbial taxa in the Amundsen Sea depended on location (e.g., waters abutting the pack ice near the shelf break and at the edge of the Dotson glacier) and depth, reflecting different niche adaptations within the confines of this isolated ecosystem. Inside the polynya, P. antarctica coexisted with the bacterial taxa Polaribacter sensu lato, a cryptic Oceanospirillum, SAR92 and Pelagibacter. These taxa were dominated by a single oligotype (genotypes partitioned by Shannon entropy analysis) and together contributed up to 73% of the bacterial community. Size fractionation of the bacterial community [〈3 μm (free-living bacteria) vs. 〉3 μm (particle-associated bacteria)] identified several taxa (especially SAR92) that were preferentially associated with Phaeocystis colonies, indicative of a distinct role in Phaeocystis bloom ecology. In contrast, particle-associated bacteria at 250 m depth were enriched in Colwellia and members of the Cryomorphaceae suggesting that they play important roles in the decay of Phaeocystis blooms.
    Description: This work received financial support from NSF Antarctic Sciences awards ANT-1142095 (Anton F. Post), ANT-0839069 and ANT-0741409 (Patricia L. Yager), and ANT-0839012 (Hugh W. Ducklow). We further acknowledge the support by “Oden Southern Ocean,” SWEDARP 2010/2011, a project organized by the Swedish Polar Research Secretariat and National Science Foundation Office of Polar Programs.
    Keywords: Amundsen Sea polynya ; Phytoplankton bloom ; Phaeocystis antarctica ; Microbial community structure ; Mutualism
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    Microbes in the coral holobiont : partners through evolution, development, and ecological interactions (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Cellular and Infection Microbiology 4 (2015): 176, doi:10.3389/fcimb.2014.00176.
    Description: In the last two decades, genetic and genomic studies have revealed the astonishing diversity and ubiquity of microorganisms. Emergence and expansion of the human microbiome project has reshaped our thinking about how microbes control host health—not only as pathogens, but also as symbionts. In coral reef environments, scientists have begun to examine the role that microorganisms play in coral life history. Herein, we review the current literature on coral-microbe interactions within the context of their role in evolution, development, and ecology. We ask the following questions, first posed by McFall-Ngai et al. (2013) in their review of animal evolution, with specific attention to how coral-microbial interactions may be affected under future environmental conditions: (1) How do corals and their microbiome affect each other's genomes? (2) How does coral development depend on microbial partners? (3) How is homeostasis maintained between corals and their microbial symbionts? (4) How can ecological approaches deepen our understanding of the multiple levels of coral-microbial interactions? Elucidating the role that microorganisms play in the structure and function of the holobiont is essential for understanding how corals maintain homeostasis and acclimate to changing environmental conditions.
    Description: Support for this work was provided to Janelle R. Thompson by the National Research Foundation of Singapore through the Center for Environmental Sensing and Modeling (CENSAM) and by the MIT Civil and Environmental Engineering Department; to Hanny E. Rivera by the MIT Presidential Fellowship; to Collin J. Closek by the National Geographic Society; and to Mónica Medina by NSF projects IOS 1146880 and IOS 0926906.
    Keywords: Coral ; Holobiont ; Metamorphosis ; Biological ; Symbiosis ; Pollution and global change ; Ecosystem ; Bacterial interactions
    Repository Name: Woods Hole Open Access Server
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    Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica (2015)
    Frontiers Media
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 1090, doi:10.3389/fmicb.2015.01090.
    Description: Antarctica polynyas support intense phytoplankton blooms, impacting their environment by a substantial depletion of inorganic carbon and nutrients. These blooms are dominated by the colony-forming haptophyte Phaeocystis antarctica and they are accompanied by a distinct bacterial population. Yet, the ecological role these bacteria may play in P. antarctica blooms awaits elucidation of their functional gene pool and of the geochemical activities they support. Here, we report on a metagenome (~160 million reads) analysis of the microbial community associated with a P. antarctica bloom event in the Amundsen Sea polynya (West Antarctica). Genomes of the most abundant Bacteroidetes and Proteobacteria populations have been reconstructed and a network analysis indicates a strong functional partitioning of these bacterial taxa. Three of them (SAR92, and members of the Oceanospirillaceae and Cryomorphaceae) are found in close association with P. antarctica colonies. Distinct features of their carbohydrate, nitrogen, sulfur and iron metabolisms may serve to support mutualistic relationships with P. antarctica. The SAR92 genome indicates a specialization in the degradation of fatty acids and dimethylsulfoniopropionate (compounds released by P. antarctica) into dimethyl sulfide, an aerosol precursor. The Oceanospirillaceae genome carries genes that may enhance algal physiology (cobalamin synthesis). Finally, the Cryomorphaceae genome is enriched in genes that function in cell or colony invasion. A novel pico-eukaryote, Micromonas related genome (19.6 Mb, ~94% completion) was also recovered. It contains the gene for an anti-freeze protein, which is lacking in Micromonas at lower latitudes. These draft genomes are representative for abundant microbial taxa across the Southern Ocean surface.
    Description: This work was performed with financial support from NSF Antarctic Sciences awards ANT-1142095 to AP.
    Keywords: Southern Ocean ; Amundsen Sea Polynya ; Phytoplankton bloom ; Phaeocystis ; Micromonas ; Microbial communities ; Metagenomics ; Genome reconstruction
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    Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: .© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 568, doi:10.3389/fmicb.2014.00568.
    Description: The human mouth is an excellent system to study the dynamics of microbial communities and their interactions with their host. We employed oligotyping to analyze, with single-nucleotide resolution, oral microbial 16S ribosomal RNA (rRNA) gene sequence data from a time course sampled from the tongue of two individuals, and we interpret our results in the context of oligotypes that we previously identified in the oral data from the Human Microbiome Project. Our previous work established that many of these oligotypes had dramatically different distributions between individuals and across oral habitats, suggesting that they represented functionally different organisms. Here we demonstrate the presence of a consistent tongue microbiome but with rapidly fluctuating proportions of the characteristic taxa. In some cases closely related oligotypes representing strains or variants within a single species displayed fluctuating relative abundances over time, while in other cases an initially dominant oligotype was replaced by another oligotype of the same species. We use this high temporal and taxonomic level of resolution to detect correlated changes in oligotype abundance that could indicate which taxa likely interact synergistically or occupy similar habitats, and which likely interact antagonistically or prefer distinct habitats. For example, we found a strong correlation in abundance over time between two oligotypes from different families of Gamma Proteobacteria, suggesting a close functional or ecological relationship between them. In summary, the tongue is colonized by a microbial community of moderate complexity whose proportional abundance fluctuates widely on time scales of days. The drivers and functional consequences of these community dynamics are not known, but we expect they will prove tractable to future, targeted studies employing taxonomically resolved analysis of high-throughput sequencing data sampled at appropriate temporal intervals and spatial scales.
    Description: Supported by National Institutes of Health (NIH) National Institute of Dental and Craniofacial Research Grant DE022586 (to Gary G. Borisy). Daniel R. Utter was supported by the Woods Hole Partnership Education Program; A. Murat Eren was supported by a G. Unger Vetlesen Foundation grant to the Marine Biological Laboratory; David B. Mark Welch was supported by NSF DBI-1262592
    Keywords: Human microbiome ; Oral microbiota ; 16S ribosomal RNA ; Haemophilus ; Neisseria ; Streptococcus ; Veillonella
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    Oligotyping reveals community level habitat selection within the genus Vibrio (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 563, doi:10.3389/fmicb.2014.00563.
    Description: The genus Vibrio is a metabolically diverse group of facultative anaerobic bacteria, common in aquatic environments and marine hosts. The genus contains several species of importance to human health and aquaculture, including the causative agents of human cholera and fish vibriosis. Vibrios display a wide variety of known life histories, from opportunistic pathogens to long-standing symbionts with individual host species. Studying Vibrio ecology has been challenging as individual species often display a wide range of habitat preferences, and groups of vibrios can act as socially cohesive groups. Although strong associations with salinity, temperature and other environmental variables have been established, the degree of habitat or host specificity at both the individual and community levels is unknown. Here we use oligotyping analyses in combination with a large collection of existing Vibrio 16S ribosomal RNA (rRNA) gene sequence data to reveal patterns of Vibrio ecology across a wide range of environmental, host, and abiotic substrate associated habitats. Our data show that individual taxa often display a wide range of habitat preferences yet tend to be highly abundant in either substrate-associated or free-living environments. Our analyses show that Vibrio communities share considerable overlap between two distinct hosts (i.e., sponge and fish), yet are distinct from the abiotic plastic substrates. Lastly, evidence for habitat specificity at the community level exists in some habitats, despite considerable stochasticity in others. In addition to providing insights into Vibrio ecology across a broad range of habitats, our study shows the utility of oligotyping as a facile, high-throughput and unbiased method for large-scale analyses of publically available sequence data repositories and suggests its wide application could greatly extend the range of possibilities to explore microbial ecology.
    Description: This work was supported by an NSF Collaborative grant to Erik Zettler (OCE-1155379), Tracy J. Mincer (OCE-1155671) and Linda A. Amaral-Zettler (OCE-1155571), NSF TUES grant to Erik Zettler and Linda A. Amaral-Zettler (DUE-1043468). Additional support came from the Woods Hole Center for Oceans and Human Health from the National Institutes of Health and National Science Foundation (NIH/NIEHS 1 P50 ES012742-01 and NSF/OCE 0430724-J: Linda A. Amaral-Zettler and Leslie Murphy) and an NSF/OCE-1128039 award (Linda A. Amaral-Zettler and Leslie Murphy). Victor Schmidt was supported during this work by an NSF IGERT fellowship (DGE 0966060, Dr. David Rand, PI).
    Keywords: Oligotyping ; Vibrio ecology ; Host-microbe interactions ; Illumina sequencing ; 16S rRNA analysis ; Plastisphere ; Aquaculture pathogens ; Meta-analysis
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    Does elevated CO2 alter silica uptake in trees? (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Plant Science 5 (2015): 793, doi:10.3389/fpls.2014.00793.
    Description: Human activities have greatly altered global carbon (C) and Nitrogen (N) cycling. In fact, atmospheric concentrations of carbon dioxide (CO2) have increased 40% over the last century and the amount of N cycling in the biosphere has more than doubled. In an effort to understand how plants will respond to continued global CO2 fertilization, long-term free-air CO2 enrichment experiments have been conducted at sites around the globe. Here we examine how atmospheric CO2 enrichment and N fertilization affects the uptake of silicon (Si) in the Duke Forest, North Carolina, a stand dominated by Pinus taeda (loblolly pine), and five hardwood species. Specifically, we measured foliar biogenic silica concentrations in five deciduous and one coniferous species across three treatments: CO2 enrichment, N enrichment, and N and CO2 enrichment. We found no consistent trends in foliar Si concentration under elevated CO2, N fertilization, or combined elevated CO2 and N fertilization. However, two-thirds of the tree species studied here have Si foliar concentrations greater than well-known Si accumulators, such as grasses. Based on net primary production values and aboveground Si concentrations in these trees, we calculated forest Si uptake rates under control and elevated CO2 concentrations. Due largely to increased primary production, elevated CO2 enhanced the magnitude of Si uptake between 20 and 26%, likely intensifying the terrestrial silica pump. This uptake of Si by forests has important implications for Si export from terrestrial systems, with the potential to impact C sequestration and higher trophic levels in downstream ecosystems.
    Description: This research was supported in part by the Sloan Foundation in a fellowship to Robinson W. Fulweiler. The Duke Forest FACE was supported by his study was supported by the US Department of Energy (Grant No. DE-FG02-95ER62083) through the Office of Biological and Environmental Research (BER) and its National Institute for Global Environmental Change (NIGEC), Southeast Regional Center (SERC) at the University of Alabama, and by the US Forest Service through both the Southern Global Climate Change Program and the Southern Research Station. Adrien C. Finzi acknowledges ancillary support from the US NSF (DEB0236356).
    Keywords: Elevated CO2 ; Silicon ; Forest Si uptake ; Terrestrial Si pump ; Active Si accumulation ; Si cycling
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    Seismostratigraphic analysis and glacial history of the Weddell Sea region, Antarctica (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, (Springer Earth System Sciences), Heidelberg [u.a.], Springer, 251 p., pp. 207-217, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2023-06-21
    Description: The Weddell Sea basin is of particular significance for understanding climate processes, including the generation of ocean water masses and their influence on ocean circulation as well as the dynamics of the Antarctic ice sheets. The sedimentary record, preserved below the basin floor, serves as an archive of the pre-glacial to glacial development of these processes, which were accompanied by tectonic processes in its early glacial phase. Three multichannel seismic reflection transects, in total nearly 5,000 km long, are used to interpret horizons and define a seismostratigraphic model for the basin. We expand this initial stratigraphy model to the greater Weddell Sea region through a network of more than 50 additional seismic lines. Information from few boreholes are used to constrain sediment ages in this stratigraphy, supported by magnetic anomalies indicating decreasing oceanic basement ages from southeast to northwest. Using these constraints, we calculate grids to depict the depths, thicknesses and sedimentation rates of pre-glacial (145–34 Ma), transitional (34–15 Ma) and full-glacial (15 Ma to present) units. Sedimentation thicknesses and sedimentation rates were calculated at the 12 selected points in the entire basin to give a brief overview of the deposition history, which will contribute to the understanding of the Antarctic ice sheet development and dynamics from the greenhouse to icehouse world in the Cenozoic.
    Repository Name: EPIC Alfred Wegener Institut
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    Impact of Sea-Ice Bottom Topography on the Ekman Pumping (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, (Springer Earth System Sciences), Heidelberg [u.a.], Springer, Toward, 251 p., pp. 139-148, ISBN: 978-3-319-13865-7
    Details
    Publication Date: 2023-06-21
    Description: Sea-ice elevation profiles and thickness measurements have been collected during summer 2011 in the Central Arctic. These two different data sets have been combined in order to obtain surface and bottom topography of the sea-ice. From the bottom profile, the keels of ridges are detected. Then, a parameterization of oceanic drag coefficients that accounts for the keels depth and density is applied. The calculated oceanic drag coefficients are highly variable (between about 2 × 10−3 and about 8 × 10−3) within the range of observed values. In order to estimate the contribution of variable drag coefficients on the Ekman pumping, the calculated drag coefficients are used in an idealized model experiment, where sea ice is drifting at constant velocity on an ocean at rest. The resulting variations of the Ekman vertical velocity are in the same order of magnitude as for variable ice velocity at the surface. In most state-of-the-art general circulation models, the variations of drag coefficients are not taken into account. The simple experiment carried out in the present study suggests that neglecting this contribution can lead to an incorrect representation of the momentum exchange between ice and ocean and to an underestimation of the Ekman pumping, with consequences for the large scale ocean circulation.
    Repository Name: EPIC Alfred Wegener Institut
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    Earth System Science—Past Experiences and Future Trends (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Earth System Science—Past Experiences and Future Trends, Heidelberg, Springer, pp. 3-7, ISBN: 978-3-319-13864-0, ISSN: 2197-9596
    Details
    Publication Date: 2023-06-21
    Description: Earth System Science has developed over the last two decades from an interesting concept in Earth sciences education to a fully integrative science focussed on understanding the complex system Earth. This evolution is partially due to the radical and far reaching anthropogenic changes and the general feeling of helplessness with regards to the possible consequences and future impacts on the Earth System. This paper proposes that a paradigm shift in undergraduate and graduate education is needed to further develop Earth System Science. Graduate programs such as the Earth System Science Research School (ESSReS), which are intrinsically trans- and interdisciplinary will help to change rigid subject specific mind-set among faculty and students. The health and sustainability of our planet is at stake
    Repository Name: EPIC Alfred Wegener Institut
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    Integration of Passive Tracers in a Three-Dimensional Ice Sheet Model (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Towards an Interdisciplinary Approach in Earth System Science, Heidelberg, Springer, pp. 161-170, ISBN: 978-3-319-13864-0, ISSN: 2197-9596
    Details
    Publication Date: 2023-06-21
    Description: Components of the climate system, such as ice sheets and marine sediments serve as invaluable archives, which can be tapped into, to reconstruct paleoclimate conditions. The relative abundance of hydrogen and oxygen isotopes in ice cores is a proxy for past local temperature evolution. However the translation of these proxies into temperature is not straightforward. Complex interdependencies in the climate system can hide or override the local climate signal at which the ice core was drilled. Using 3D ice sheet modelling in concert with passive tracer advection one can simulate the isotopic distribution in ice sheets and compare them to ice core data. Combining this method in a coupled climate model environment, containing atmosphere and ocean components, one can theoretically simulate the isotopic cycle from the source to the actual ice record. Such an approach would greatly support the interpretation of proxy data whilst constraining the output of 3D ice sheet models (ISMs). We present the implementation of passive tracer advection in our 3D ISM RIMBAY (Thoma et al. in Geosci Model Dev 1:1–21, 2014, Goeller et al. in Cryosphere 7:1095–1106, 2014) and asses the potential of the method to reproduce chronologies of the polar ice sheets
    Repository Name: EPIC Alfred Wegener Institut
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    Marine Litter as Habitat and Dispersal Vector (2015)
    Springer
    In:  EPIC3Marine Anthropogenic Litter, Marine Anthropogenic Litter, Berlin, Springer, 447 p., pp. 141-181, ISBN: 978-3-319-16509-7
    Details
    Publication Date: 2023-06-21
    Description: Floating anthropogenic litter provides habitat for a diverse community of marine organisms. A total of 387 taxa, including pro- and eukaryotic micro-organisms, seaweeds and invertebrates, have been found rafting on floating litter in all major oceanic regions. Among the invertebrates, species of bryozoans, crustaceans, molluscs and cnidarians are most frequently reported as rafters on marine litter. Microorganisms are also ubiquitous on marine litter although the composition of the microbial community seems to depend on specific substratum characteristics such as the polymer type of floating plastic items. Sessile suspension feeders are particularly well-adapted to the limited autochthonous food resources on artificial floating substrata and an extended planktonic larval development seems to facilitate colonization of floating litter at sea. Properties of floating litter, such as size and surface rugosity, are crucial for colonization by marine organisms and the subsequent succession of the rafting community. The rafters themselves affect substratum characteristics such as floating stability, buoyancy, and degradation. Under the influence of currents and winds marine litter can transport associated organisms over extensive distances. Because of the great persistence (especially of plastics) and the vast quantities of litter in the world’s oceans, rafting dispersal has become more prevalent in the marine environment, potentially facilitating the spread of invasive species.
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    Marine Anthropogenic Litter (2015)
    Springer
    In:  EPIC3Berlin, Springer, 447 p., ISBN: 978-3-319-16510-3
    Details
    Publication Date: 2023-06-21
    Description: This book describes how manmade litter, primarily plastic, has spread into the remotest parts of the oceans and covers all aspects of this pollution problem from the impacts on wildlife and human health to socio-economic and political issues. Marine litter is a prime threat to marine wildlife, habitats and food webs worldwide. The book illustrates how advanced technologies from deep-sea research, microbiology and mathematic modelling as well as classic beach litter counts by volunteers contributed to the broad awareness of marine litter as a problem of global significance. The authors summarise more than five decades of marine litter research, which receives growing attention after the recent discovery of great oceanic garbage patches and the ubiquity of microscopic plastic particles in marine organisms and habitats. In 16 chapters, authors from all over the world have created a universal view on the diverse field of marine litter pollution, the biological impacts, dedicated research activities, and the various national and international legislative efforts to combat this environmental problem. They recommend future research directions necessary for a comprehensive understanding of this environmental issue and the development of efficient management strategies. This book addresses scientists, and it provides a solid knowledge base for policy makers, NGOs, and the broader public.
    Repository Name: EPIC Alfred Wegener Institut
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    Progress in Earth System Science: What Does It Take to Make Our Ideas Clear? (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Towards an Interdisciplinary Approach in Earth System Science, Heidelberg, Springer, pp. 25-35, ISBN: 978-3-319-13864-0, ISSN: 2197-9596
    Details
    Publication Date: 2023-06-21
    Description: To describe the progress in Earth System Science, a conceptual framework is proposed which includes hypothesis testing, the formulation of models with different complexity as well as expressing discoveries in terms of metaphors. The later approach is demonstrated by the conveyor belt concept in oceanography which influenced the discussion about abrupt climate changes where the ocean circulation may be involved. It is argued that the combination of different methodologies/complexities and independent results is necessary to prevent over-simplistic views in each discipline of Earth System Science. Emphasis is given on typical steps to obtain new ideas for a new discovery. Examples for over-simplistic views are mentioned for past climate information from proxy data. The recorder system of the proxy has to be taken into account, otherwise the climate information can be misinterpreted. It is concluded that in the field of Earth System Science, basic knowledge and true collaborative problem solving is necessary to make scientists aware of the underlying principles, the limitations and open questions. This is furthermore necessary to develop and sharpen our ideas about the complex Earth System.
    Repository Name: EPIC Alfred Wegener Institut
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    Methodology Used for the Detection and Identification of Microplastics—A Critical Appraisal (2015)
    Springer
    In:  EPIC3Marine Anthropogenic Litter, Marine Anthropogenic Litter, Berlin, Springer, 447 p., pp. 201-227, ISBN: 978-3-319-16510-3
    Details
    Publication Date: 2023-06-21
    Description: Microplastics in aquatic ecosystems and especially in the marine environment represent a pollution of increasing scientific and societal concern, thus, meanwhile a substantial number of studies on microplastics exist. Although first steps towards a standardisation of methodologies used for the detection and identification of microplastics in environmental samples are made, the comparability of data on microplastics is currently hampered by a huge variety of different methodologies which result in the generation of data of extremely different quality and resolution. This chapter reviews the methodology presently used for assessing the concentration of microplastics in the marine environment with focus on the most convenient techniques and approaches. After an overview of non-selective sampling approaches, sample processing and treatment in the laboratory, the reader is introduced to the currently applied techniques for the identification and quantification of microplastics. The subsequent case study on microplastics in sediment samples from the North Sea measured with focal plane array (FPA)-based micro-Fourier transform infrared (micro-FTIR) spectroscopy shows that only 1.4 % of the particles visually resembling microplastics were of synthetic polymer origin. This finding emphasizes the importance of verifying the synthetic polymer origin of potential microplastics. Thus, a burning issue concerning current microplastic research is the generation of standards that allow for the assessment of reliable data on concentrations of microscopic plastic particles and the involved polymers with analytical laboratory techniques such as micro-FTIR or micro-Raman spectroscopy.
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    Evolution of Lightweight Structures: Analyses and Technical Applications (2015)
    Springer
    In:  EPIC3Springer, 206 p., ISBN: 9401793972
    Details
    Publication Date: 2022-11-10
    Description: This volume contains studies on the evolution and function of lightweight constructions of planktonic and other organisms, and examples of how they can be used to create new solutions for radical innovations of lightweight constructions for technological application. The principles and underlying processes responsible for evolution and biodiversity of marine plankton organisms are highly relevant and largely unresolved issues in the field of marine science. Amongst the most promising objects for the study of evolution of stable lightweight constructions are marine organisms such as diatoms or radiolarians. Research in these fields requires interdisciplinary expertises such as in evolutionary modelling, paleontology, lightweight optimization, functional morphology, and marine ecology. Considerable effort and expert knowledge in production engineering or lightweight optimization is necessary to transfer knowledge on biogenic structures and evolutionary principles into new lightweight solutions. This book shows methods and examples of how this can be achieved efficiently.
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    The educational program of the Earth System Science Research School (ESSReS) (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Towards an Interdisciplinary Approach in Earth System Science, Heidelberg, Springer, pp. 9-17, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2023-06-21
    Description: The Earth System Science Research School (ESSReS) is an international and interdisciplinary research school for 23 PhD students at the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI) and their partner universities: University of Bremen and Jacobs University Bremen. ESSReS combines observations, modelling, and data analysis in order to decipher the Earth’s complex climate system. Structured training, international exchange and supervision support interdisciplinary research at an early stage of the scientific career.
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    Geological Storage of CO2 - long term security aspects (2015)
    Springer
    In:  Geotechnologien science report | Advanced Technologies in Earth Sciences
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    Publication Date: 2020-02-12
    Type: info:eu-repo/semantics/book
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    Restoration of rare earth mine areas: organic amendments and phytoremediation (2015)
    Springer
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    Publication Date: 2015-07-03
    Print ISSN: 0944-1344
    Electronic ISSN: 1614-7499
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Response of extracellular carboxylic and thiol ligands (oxalate, thiol compounds) to Pb2+ stress in Phanerochaete chrysosporium (2015)
    Springer
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    Publication Date: 2015-04-28
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Resonance Raman imaging as a tool to assess the atmospheric pollution level: carotenoids in Lecanoraceae lichens as bioindicators (2015)
    Springer
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    Publication Date: 2015-12-01
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Levels of perfluorinated compounds in human breast milk in Jordan: the impact of sociodemographic characteristics (2015)
    Springer
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    Publication Date: 2015-04-24
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Effects of untreated and treated oilfield-produced water on seed germination, seedling development, and biomass production of sunflower (Helianthus annuus L.) (2015)
    Springer
    Details
    Publication Date: 2015-06-10
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Effects of the size and morphology of zinc oxide nanoparticles on the germination of Chinese cabbage seeds (2015)
    Springer
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    Publication Date: 2015-02-28
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Greenhouse gas emissions, soil quality, and crop productivity from a mono-rice cultivation system as influenced by fallow season straw management (2015)
    Springer
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    Publication Date: 2015-08-26
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Organic fraction of municipal solid waste from mechanical selection: biological stabilization and recovery options (2015)
    Springer
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    Publication Date: 2015-09-17
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    An experimental study on usage of plastic oil and B20 algae biodiesel blend as substitute fuel to diesel engine (2015)
    Springer
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    Publication Date: 2015-12-23
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Impact of flash flood events on the distribution of organic pollutants in surface sediments from a Mediterranean coastal lagoon (Mar Menor, SE Spain) (2015)
    Springer
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    Publication Date: 2015-05-12
    Print ISSN: 0944-1344
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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    Cumulative effect of zinc oxide and titanium oxide nanoparticles on growth and chlorophyll a content of Picochlorum sp. (2015)
    Springer
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    Publication Date: 2015-10-10
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    Publication Date: 2015-10-24
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    Publication Date: 2015-05-13
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    Publication Date: 2015-06-26
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    Publication Date: 2015-10-26
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    Publication Date: 2015-03-20
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    Publication Date: 2015-05-22
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