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  • Oxford University Press  (58.120)
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  • 1
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    Oxford University Press
    Publikationsdatum: 2024-03-23
    Beschreibung: "With so much media and political criticism of their shortcomings and failures, it is easy to overlook the fact that many governments work pretty well much of the time. Great Policy Successes turns the spotlight on instances of public policy that are remarkably successful. It develops a framework for identifying and assessing policy successes, paying attention not just to their programmatic outcomes but also to the quality of the processes by which policies are designed and delivered, the level of support and legitimacy they attain, and the extent to which successful performance endures over time. The bulk of the book is then devoted to 15 detailed case studies of striking policy successes from around the world, including Singapore's public health system, Copenhagen and Melbourne's rise from stilted backwaters to the highly liveable and dynamic urban centres they are today, Brazil's Bolsa Familia poverty relief scheme, the US's GI Bill, and Germany's breakthrough labour market reforms of the 2000s. Each case is set in context, its main actors are introduced, key events and decisions are described, the assessment framework is applied to gauge the nature and level of its success, key contributing factors to success are identified, and potential lessons and future challenges are identified. Purposefully avoiding the kind of heavy theorizing that characterizes many accounts of public policy processes, each case is written in an accessible and narrative style ideally suited for classroom use in conjunction with mainstream textbooks on public policy design, implementation, and evaluation.
    Schlagwort(e): public policy ; policy evaluation ; government ; governance ; social policy ; health policy ; economic policy ; thema EDItEUR::J Society and Social Sciences::JP Politics and government
    Sprache: Englisch
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  • 2
    Publikationsdatum: 2021-06-21
    Beschreibung: We present the analysis of rotational and translational ground motions from earthquakes recorded during October–November 2016, in association with the Central Italy seismic sequence. We use co-located measurements of the vertical ground rotation rate from a large ring laser gyroscope and the three components of ground velocity from a broad-band seismometer. Both instruments are positioned in a deep underground environment, within the Gran Sasso National Laboratories of the Istituto Nazionale di Fisica Nucleare. We collected dozens of events spanning the 3.5–5.9 magnitude range and epicentral distances between 30 and 70 km. This data set constitutes an unprecedented observation of the vertical rotational motions associated with an intense seismic sequence at local distance. Under the plane-wave approximation we process the data set in order to get an experimental estimation of the events backazimuth. Peak values of rotation rate (PRR) and horizontal acceleration (PGA) are markedly correlated, according to a scaling constant which is consistent with previous measurements from different earthquake sequences. We used a prediction model in use for Italy to calculate the expected PGA at the recording site, obtaining consequently predictions for PRR. Within the modelling uncertainties, predicted rotations are consistent with the observed ones, suggesting the possibility of establishing specific attenuation models for ground rotations, like the scaling of peak velocity and peak acceleration in empirical ground-motion prediction relationships. In a second step, after identifying the direction of the incoming wavefield, we extract phase-velocity data using the spectral ratio of the translational and rotational components. This analysis is performed over time windows associated with the P-coda, S-coda and Lg phase. Results are consistent with independent estimates of shear wave velocities in the shallow crust of the Central Apennines
    Beschreibung: Published
    Beschreibung: 705-715
    Beschreibung: 4T. Sismicità dell'Italia
    Beschreibung: JCR Journal
    Schlagwort(e): Rotational seismology ; Surface waves and free oscillations ; Wave propagation
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 3
    Publikationsdatum: 2019-12-03
    Beschreibung: Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra (aph(λ)) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion technique to underway spectrophotometry data. We find that Gaussian decomposition provides good estimates (median absolute percentage error, MPE 21–34%) of total chlorophyll-a (TChl-a), total chlorophyll-b (TChl-b), the combination of chlorophyll-c1 and -c2 (Chl-c1/2), photoprotective (PPC) and photosynthetic carotenoids (PSC). This method outperformed one of the matrix inversion algorithms, i.e., singular value decomposition combined with non-negative least squares (SVD-NNLS), in retrieving TChl-b, Chl-c1/2, PSC, and PPC. However, SVD-NNLS enables robust retrievals of specific carotenoids (MPE 37–65%), i.e., fucoxanthin, diadinoxanthin and 19′-hexanoyloxyfucoxanthin, which is currently not accomplished by Gaussian decomposition. More robust predictions are obtained using the Gaussian decomposition method when the observed aph(λ) is normalized by the package effect index at 675 nm. The latter is determined as a function of “packaged” aph(675) and TChl-a concentration, which shows potential for improving pigment retrieval accuracy by the combined use of aph(λ) and TChl-a concentration data. To generate robust estimation statistics for the matrix inversion technique, we combine leave-one-out cross-validation with data perturbations. We find that both approaches provide useful information on pigment distributions, and hence, phytoplankton community composition indicators, at a spatial resolution much finer than that can be achieved with discrete samples.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
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  • 4
    Publikationsdatum: 2021-02-16
    Beschreibung: Arctic and subarctic regions are sensitive to climate change and, reversely, provide dramatic feedbacks to the global climate. With a focus on discovering paleoclimate and paleoceanographic evolution in the Arctic and Northwest Pacific Oceans during the last 20,000 years, we proposed this German–Sino cooperation program according to the announcement “Federal Ministry of Education and Research (BMBF) of the Federal Republic of Germany for a German–Sino cooperation program in the marine and polar research”. Our proposed program integrates the advantages of the Arctic and Subarctic marine sediment studies in AWI (Alfred Wegener Institute) and FIO (First Institute of Oceanography). For the first time, the collection of sediment cores can cover all climatological key regions in the Arctic and Northwest Pacific Oceans. Furthermore, the climate modeling work at AWI enables a “Data-Model Syntheses”, which are crucial for exploring the underlying mechanisms of observed changes in proxy records.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , peerRev
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  • 5
    Publikationsdatum: 2019-05-28
    Beschreibung: An intercomparison of radiance and irradiance ocean color radiometers (the second laboratory comparison exercise—LCE-2) was organized within the frame of the European Space Agency funded project Fiducial Reference Measurements for Satellite Ocean Color (FRM4SOC) May 8–13, 2017 at Tartu Observatory, Estonia. LCE-2 consisted of three sub-tasks: (1) SI-traceable radiometric calibration of all the participating radiance and irradiance radiometers at the Tartu Observatory just before the comparisons; (2) indoor, laboratory intercomparison using stable radiance and irradiance sources in a controlled environment; (3) outdoor, field intercomparison of natural radiation sources over a natural water surface. The aim of the experiment was to provide a link in the chain of traceability from field measurements of water reflectance to the uniform SI-traceable calibration, and after calibration to verify whether di�erent instruments measuring the same object provide results consistent within the expected uncertainty limits. This paper describes the third phase of LCE-2: The results of the field experiment. The calibration of radiometers and laboratory comparison experiment are presented in a related paper of the same journal issue. Compared to the laboratory comparison, the field intercomparison has demonstrated substantially larger variability between freshly calibrated sensors, because the targets and environmental conditions during radiometric calibration were di�erent, both spectrally and spatially. Major di�erences were found for radiance sensors measuring a sunlit water target at viewing zenith angle of 139� because of the di�erent fields of view. Major di�erences were found for irradiance sensors because of imperfect cosine response of di�users. Variability between individual radiometers did depend significantly also on the type of the sensor and on the specific measurement target. Uniform SI traceable radiometric calibration ensuring fairly good consistency for indoor, laboratory measurements is insu�cient for outdoor, field measurements, mainly due to the di�erent angular variability of illumination. More stringent specifications and individual testing of radiometers for all relevant systematic e�ects (temperature, nonlinearity, spectral stray light, etc.) are needed to reduce biases between instruments and better quantify measurement uncertainties.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
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  • 6
    Publikationsdatum: 2019-05-28
    Beschreibung: An intercomparison of radiance and irradiance ocean color radiometers (The Second Laboratory Comparison Exercise—LCE-2) was organized within the frame of the European Space Agency funded project Fiducial Reference Measurements for Satellite Ocean Color (FRM4SOC) May 8–13, 2017 at Tartu Observatory, Estonia. LCE-2 consisted of three sub-tasks: 1) SI-traceable radiometric calibration of all the participating radiance and irradiance radiometers at the Tartu Observatory just before the comparisons; 2) Indoor intercomparison using stable radiance and irradiance sources in controlled environment; and 3) Outdoor intercomparison of natural radiation sources over terrestrial water surface. The aim of the experiment was to provide one link in the chain of traceability from field measurements of water reflectance to the uniform SI-traceable calibration, and after calibration to verify whether di�erent instruments measuring the same object provide results consistent within the expected uncertainty limits. This paper describes the activities and results of the first two phases of LCE-2: the SI-traceable radiometric calibration and indoor intercomparison, the results of outdoor experiment are presented in a related paper of the same journal issue. The indoor experiment of the LCE-2 has proven that uniform calibration just before the use of radiometers is highly e�ective. Distinct radiometers from di�erent manufacturers operated by di�erent scientists can yield quite close radiance and irradiance results (standard deviation s 〈 1%) under defined conditions. This holds when measuring stable lamp-based targets under stationary laboratory conditions with all the radiometers uniformly calibrated against the same standards just prior to the experiment. In addition, some unification of measurement and data processing must be settled. Uncertaint of radiance and irradiance measurement under these conditions largely consists of the sensor’s calibration uncertainty and of the spread of results obtained by individual sensors measuring the same object.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
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  • 7
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    MDPI
    In:  EPIC3Remote Sensing, MDPI, 11(9), pp. 1-18, ISSN: 2072-4292
    Publikationsdatum: 2019-05-20
    Beschreibung: Real-time quality-controlled surface current data derived from X-Band marine radar (MR) measurements were evaluated to estimate their operational reliability. The presented data were acquired by the standard commercial o�-the-shelf MR-based sigma s6 WaMoS® II (WaMoS® II) deployed onboard the German Research vessel Polarstern. The measurement reliability is specified by an IQ value obtained by the WaMoS® II real-time quality control (rtQC). Data which pass the rtQC without objection are assumed to be reliable. For these data sets accuracy and correlation with corresponding vessel-mounted acoustic Doppler current profiler (ADCP) measurements are determined. To reduce potential misinterpretation due to short-term oceanic variability/turbulences, the evaluation of the WaMoS® II accuracy was carried out based on sliding means over 20 min of the reliable data only. The associated standard deviation �WaMoS = 0.02 m/s of the meanWaMoS® II measurements reflect a high precision of the measurement and the successful rtQC during di�erent wave, current and weather conditions. The direct comparison of 7272 WaMoS® II/ADCP northward and eastward velocity data pairs yield a correlation of r � 0.94, with jbiasDj � 0.06 m/s and �S = 0.05 m/s. This confirms that the MR-based surface current measurements are accurate and reliable.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 8
    Publikationsdatum: 2019-09-01
    Beschreibung: Coring sediments in subglacial aquatic environments offers unique opportunities for research on paleo-environments and paleo-climates because it can provide data from periods even earlier than ice cores, as well as the overlying ice histories, interactions between ice and the water system, life forms in extreme habitats, sedimentology, and stratigraphy. However, retrieving sediment cores from a subglacial environment faces more difficulties than sediment coring in oceans and lakes, resulting in low yields from the most current subglacial sediment coring methods. The coring tools should pass through a hot water-drilled access borehole, then the water column, to reach the sediment layers. The access boreholes are size-limited by the hot water drilling tools and techniques. These holes are drilled through ice up to 3000–4000 m thick, with diameters ranging from 10–60 cm, and with a refreezing closure rate of up to 6 mm/h after being drilled. Several purpose-built streamline corers have been developed to pass through access boreholes and collect the sediment core. The main coring objectives are as follows: (i) To obtain undisturbed water–sediment cores, either singly or as multi-cores and (ii) to obtain long cores with minimal stratigraphic deformation. Subglacial sediment coring methods use similar tools to those used in lake and ocean coring. These methods include the following: Gravity coring, push coring, piston coring, hammer or percussion coring, vibrocoring, and composite methods. Several core length records have been attained by different coring methods, including a 290 cm percussion core from the sub-ice-shelf seafloor, a 400 cm piston core from the sub-ice-stream, and a 170 cm gravity core from a subglacial lake. There are also several undisturbed water–sediment cores that have been obtained by gravity corers or hammer corers. Most current coring tools are deployed by winch and cable facilities on the ice surface. There are three main limitations for obtaining long sediment cores which determines coring tool development, as follows: Hot-water borehole radial size restriction, the sedimentary structure, and the coring techniques. In this paper, we provide a general view on current developments in coring tools, including the working principles, corer characteristics, operational methods, coring site locations, field conditions, coring results, and possible technical improvements. Future prospects in corer design and development are also discussed.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
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  • 9
    Publikationsdatum: 2019-10-21
    Beschreibung: Air temperatures in the Arctic have increased substantially over the last decades, which has extensively altered the properties of the land surface. Capturing the state and dynamics of Land Surface Temperatures (LSTs) at high spatial detail is of high interest as LST is dependent on a variety of surficial properties and characterizes the land–atmosphere exchange of energy. Accordingly, this study analyses the influence of different physical surface properties on the long-term mean of the summer LST in the Arctic Mackenzie Delta Region (MDR) using Landsat 30 m-resolution imagery between 1985 and 2018 by taking advantage of the cloud computing capabilities of the Google Earth Engine. Multispectral indices, including the Normalized Difference Vegetation Index (NDVI), Normalized Difference Water Index (NDWI) and Tasseled Cap greenness (TCG), brightness (TCB), and wetness (TCW) as well as topographic features derived from the TanDEM-X digital elevation model are used in correlation and multiple linear regression analyses to reveal their influence on the LST. Furthermore, surface alteration trends of the LST, NDVI, and NDWI are revealed using the Theil-Sen (T-S) regression method. The results indicate that the mean summer LST appears to be mostly influenced by the topographic exposition as well as the prevalent moisture regime where higher evapotranspiration rates increase the latent heat flux and cause a cooling of the surface, as the variance is best explained by the TCW and northness of the terrain. However, fairly diverse model outcomes for different regions of the MDR (R2 from 0.31 to 0.74 and RMSE from 0.51 °C to 1.73 °C) highlight the heterogeneity of the landscape in terms of influential factors and suggests accounting for a broad spectrum of different factors when modeling mean LSTs. The T-S analysis revealed large-scale wetting and greening trends with a mean decadal increase of the NDVI/NDWI of approximately +0.03 between 1985 and 2018, which was mostly accompanied by a cooling of the land surface given the inverse relationship between mean LSTs and vegetation and moisture conditions. Disturbance through wildfires intensifies the surface alterations locally and lead to significantly cooler LSTs in the long-term compared to the undisturbed surroundings.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 10
    Publikationsdatum: 2021-07-23
    Beschreibung: In this work, laboratory tests with live bivalves as well as the conceptual design of additively manufactured surrogate models are presented. The overall task of this work is to develop a surrogate best fitting to the live mussels tested in accordance to the identified surface descriptor, i.e., the Abbott–Firestone Curve, and to the hydrodynamic behaviour by means of drag and inertia coefficients. To date, very few investigations have focused on loads from currents as well as waves. Therefore, tests with a towing carriage were carried out in a wave flume. A custom-made rack using mounting clamps was built to facilitate carriage-run tests with minimal delays. Blue mussels (Mytilus edulis) extracted from a site in Germany, which were kept in aerated seawater to ensure their survival for the test duration, were used. A set of preliminary results showed drag and inertia coefficients CD and CM ranging from 1.16–3.03 and 0.25 to 1.25. To derive geometrical models of the mussel dropper lines, 3-D point clouds were prepared by means of 3-D laser scanning to obtain a realistic surface model. Centered on the 3-D point cloud, a suitable descriptor for the mass distribution over the surface was identified and three 3-D printed surrogates of the blue mussel were developed for further testing. These were evaluated regarding their fit to the original 3-D point cloud of the live blue mussels via the chosen surface descriptor.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 11
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    MDPI
    In:  EPIC3Remote Sensing, MDPI, 8(871), pp. 1-21, ISSN: ISSN 2072-4292
    Publikationsdatum: 2016-11-08
    Beschreibung: Studying phytoplankton functional types (PFTs) from space is possible due to recent advances in remote sensing. Though a variety of products are available, the limited number of wavelengths available compared to the number of model parameters needed to be retrieved is still a major problem in using ocean-color data for PFT retrievals. Here, we investigated which band placement could improve retrievals of three particular PFTs (diatoms, coccolithophores and cyanobacteria). In addition to analyzing dominant spectral features in the absorption spectra of the target PFTs, two previously-developed methods using measured spectra were applied to simulated data. Such a synthetic dataset allowed for significantly increasing the number of scenarios and enabled a full control over parameters causing spectral changes. We evaluated the chosen band placement by applying an adapted ocean reflectance inversion, as utilized in the generalized inherent optical properties (GIOP) retrieval. Results show that the optimal band settings depend on the method applied to determine the bands placement, as well as on the internal variability of the dataset investigated. Therefore, continuous hyperspectral instruments would be most beneficial for discriminating multiple PFTs, though a small improvement in spectral sampling and resolution does not significantly modify the results. Bands, which could be added to future instruments (e.g., Ocean and Land Colour Instrument (OLCI) instrument on the upcoming Sentinel-3B,-3C,-3D, etc., and further satellites) in order to enhance PFT retrieval capabilities, were also determined.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 12
    Publikationsdatum: 2016-05-20
    Repository-Name: EPIC Alfred Wegener Institut
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  • 13
    Publikationsdatum: 2017-04-04
    Beschreibung: The mineralogy of thermometamorphic granites is relatively simple, making it possible to track the spatial distribution of chemical and mineralogical variations in these rocks and investigate the processes that underpin these metamorphic reactions.We have undertaken a detailed investigation of metagranites from the contact aureole that fringes a quartz diorite intrusion of Late Permian age, emplaced into Carboniferous peraluminous granites of the Gennargentu Igneous Complex (Sardinia, Italy). New data are presented including the petrography of metagranites within a 500 m zone adjacent to the quartz diorite intrusion, the compositions of minerals and bulk-rocks, and the oxygen isotope compositions of separated minerals. We have used these data to assess the mobility of elements, expressed as oxide, in the aureole, and the physical conditions of fluid-assisted thermometamorphism. Modal variations and the oscillatory zoning of plagioclase demonstrate that the shallow (P 200MPa) quartz diorite intrusion was emplaced through a number of magmatic injections.The border zone of the quartz diorite intrusion presents evidence of two main processes: hybridization between andesite and rhyolite magmas and volatile saturation of the mingled magma. Modal differences in the contact zone with respect to the protolith (i.e. peraluminous granite), variations in mineral composition, temperature constraints and K2O, Na2O, SiO2 and Al2O3 indicate that a relatively large volume of the host granite (up to 400 m from the contact) was metasomatized by high-temperature (650^3508C) fluids derived from the mingled zone of the quartz diorite intrusion. In detail, the metasomatic K2O-rich fluid reacted with albite to form K-feldspar, and triggered the recrystallization of quartz and plagioclase to higher calcium concentrations. The progressive increase in the MgO/(MgOþFeO) of chlorite closer to the contact indicates that this phase also recrystallized. The iron released during chlorite recrystallization was buffered by hematite formation in the pores of metasomatic K-feldspar. The Gennargentu metagranites provide evidence that metasomatic fluids can play a major role in driving metamorphic reactions in contact aureoles. For instance, the expected increase of Ca in plagioclase owing to thermal equilibration was not achieved in the high-T zone of the aureole because of fluid-assisted removal of cations.We conclude that caution should be taken when interpreting the processes that underpin contact metamorphism in terms of thermally driven, ionic diffusion alone, because the role of fluids may be significant, if not overwhelming, in the domains closest to the magmatic source.
    Beschreibung: Published
    Beschreibung: 839-859
    Beschreibung: 3V. Dinamiche e scenari eruttivi
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): contact metamorphism ; metasomatism ; red metagranites ; oxygen isotopes ; Gennargentu Igneous Complex ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 14
    Publikationsdatum: 2017-04-04
    Beschreibung: Abstract: The conservation of architectural heritage usually requires a multidisciplinary approach involving a variety of specialist expertise and techniques. Nevertheless, destructive techniques should be avoided, wherever possible, in order to preserve the integrity of the historical buildings, therefore the development of non-destructive and non-contact techniques is extremely important. In this framework, a methodology for combining the terrestrial laser scanning and the infrared thermal images is proposed, in order to obtain a reconnaissance of the conservation state of a historical building. The proposed case study is represented by St. Augustine Monumental Compound, located in the historical centre of the town of Cosenza (Calabria, South Italy). Adopting the proposed methodology, the paper illustrates the main results obtained for the building test overlaying and comparing the collected data with both techniques, in order to outline the capabilities both to detect the anomalies and to improve the knowledge on health state of the masonry building. The 3D model, also, allows to provide a reference model, laying the groundwork for implementation of a monitoring multisensor system based on the use of non-destructive techniques.
    Beschreibung: The presented work has been carried out in the PON Monitoraggio in Area Sismica di SIstemi MOnumentali (MASSIMO) project framework, managed by the Italian National Institute of Geophysics and Volcanology (INGV) and funded by the Italian Ministry of Education, University and Research
    Beschreibung: Published
    Beschreibung: 194-213
    Beschreibung: 6A. Monitoraggio ambientale, sicurezza e territorio
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): terrestrial laser scanner ; IR thermography ; historical buildings conservation ; preventive diagnosis ; 05. General::05.04. Instrumentation and techniques of general interest::05.04.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 15
    Publikationsdatum: 2017-04-04
    Beschreibung: We reply to the comments of De Natale and Pino (2013) on the paper “Are the source models of the M 7.1 1908 Messina Straits earthquake reliable? Insights from a novel inversion and sensitivity analysis of levelling data” by Aloisi et al. (2012). We entirely reject their speculative comments and confirm our viewpoint about the impossibility of discriminating between the two oppositely dipping fault models on the basis of the levelling data alone; we state again that their role as a keystone for modellers is untenable. The comment of De Natale and Pino (2013) are welcomed insofar they give us the possibility to improve our previous analysis, and to criticize the mainstream hypothesis favoring to a low-angle East dipping fault in the Sicilian side of the Messina Straits as responsible of the 1908 destructive earthquake.
    Beschreibung: Published
    Beschreibung: 1403–1409
    Beschreibung: 2T. Tettonica attiva
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): Transient deformation ; Earthquake dynamics ; Earthquake source observations ; 04. Solid Earth::04.03. Geodesy::04.03.01. Crustal deformations ; 04. Solid Earth::04.06. Seismology::04.06.01. Earthquake faults: properties and evolution ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 16
    Publikationsdatum: 2017-04-04
    Beschreibung: In order to exploit radon profiles for geophysical purposes and also to estimate its entry indoors, it is necessary to study its transport through porous soils. The great number of involved parameters and processes affecting the emanation of radon from the soil grains and its transport in the source medium has led to many theoretical and/or laboratory studies. The authors report the first results of a laboratory study carried out at the Radioactivity Laboratory of the Department of Physics and Astronomy (University of Catania) by means of a facility for measuring radon concentrations in the sample pores at various depths under well-defined and controlled conditions of physical parameters. In particular, radon concentration vertical profiles extracted in low-moisture samples for different advective fluxes and temperatures were compared with expected concentrations, according to a three-phase transport model developed by Andersen (Risø National Laboratory, Denmark), showing, in general, a good agreement between measurements and model calculations.
    Beschreibung: Published
    Beschreibung: 575-581
    Beschreibung: 4V. Vulcani e ambiente
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Radon ; profile ; geophysic ; porous ; 01. Atmosphere::01.01. Atmosphere::01.01.05. Radiation
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 17
    Publikationsdatum: 2017-04-04
    Beschreibung: The three volcanoes that are the object of this paper show different types of activity that are representative of the large variety of volcanism present in the Central Mediterranean area. Etna and Stromboli are sub-aerial volcanoes, with significant part of their structure under the sea, while the Marsili Seamount is submerged, and its activity is still open to debate. The study of these volcanoes can benefit from multi-parametric observations from the seafloor. Each volcano was studied with a different kind of observation system. Stromboli seismic recordings are acquired by means of a single Ocean Bottom Seismometer (OBS). From these data, it was possible to identify two different magma chambers at different depths. At Marsili Seamount, gravimetric and seismic signals are recorded by a battery-powered multi-disciplinary observatory (GEOSTAR). Gravimetric variations and seismic Short Duration Events (SDE) confirm the presence of hydrothermal activity. At the Etna observation site, seismic signals, water pressure, magnetic field and acoustic echo intensity are acquired in real-time thanks to a cabled multi-disciplinary observatory (NEMO-SN1 ). This observatory is one of the operative nodes of the European Multidisciplinary Seafloor and water-column Observatory (EMSO; www.emso-eu.org) research infrastructure. Through a multidisciplinary approach, we speculate about deep Etna sources and follow some significant events, such as volcanic ash diffusion in the seawater.
    Beschreibung: Published
    Beschreibung: 298
    Beschreibung: 3A. Ambiente Marino
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): EMSO ; volcanic ash clouds ; seafloor observatories ; stand-alone monitoring systems ; volcano seismology ; 03. Hydrosphere::03.04. Chemical and biological::03.04.08. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 18
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2017-04-04
    Beschreibung: We provide an updated present-day stress map for the Italian territory. Following the World Stress Map (WSM) Project guidelines, we list the different stress indicators, explaining the criteria used to select data. We discuss the data, which will also be included in the 2016 release of the WSM, highlighting the areas for which we have added stress information. Our map displays the minimum horizontal stress orientations inferred from crustal stress indicators down to 40 km depth using data of A–C quality, updated for earthquakes until December 2015. We have completely reviewed all data, and the data set now contains 855 entries, in contrast to the previous 715. The number of data with A–C quality of 630 corresponds to an increase of 26 per cent relative to the previous data set. In particular, the new data set contains the results of the analysis of borehole breakouts, critically reviewed data from earthquake focal mechanisms, data concerning active faults, formal inversions of focal mechanisms of seismic sequences or of restricted areas and one stress determination from overcoring. The new data set defines the stress field in areas not well covered by the previous data: the region north to the Po Plain and the central Adriatic sea, both characterized by a thrust- and strike-faulting regime, the northern Sicilian belt with a prevailing normal-faulting regime, and the Ionian sea with a strike-slip regime.
    Beschreibung: Published
    Beschreibung: 1525-1531
    Beschreibung: 2T. Tettonica attiva
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): Seismicity and tectonics ; Dynamics: seismotectonics ; Crustal structure ; Europe ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 19
    Publikationsdatum: 2019-03-13
    Beschreibung: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2015. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Beschreibung: Mud volcanoes are geological systems often characterized by elevated fluid pressures at depth deviating from hydrostatic conditions. This near-critical state makes mud volcanoes particularly sensitive to external forcing induced by natural or man-made perturbations. We used the Nirano mud volcanic field as a natural laboratory to test pre- and post-seismic effects generated by distant earthquakes.We first characterized the subsurface structure of the Nirano mud volcanic field with a geoelectrical study. Next, we deployed a broad-band seismic station in the area to understand the typical seismic signal generated by the mud volcano. Seismic records show a background noise below 2 s, sometimes interrupted by pulses of drumbeatlike high-frequency signals lasting from several minutes to hours. To date this is the first observation of drumbeat signal observed in mud volcanoes. In 2013 June we recorded a M4.7 earthquake, that occurred approximately 60 km far from our seismic station. According to empirical estimations the Nirano mud volcanic field should not have been affected by the M4.7 earthquake. Yet, before the seismic event we recorded an increasing amplitude of the signal in the 10–20 Hz frequency band. The signal emerged approximately two hours before the earthquake and lasted for about three hours. Our statistical analysis suggests the presence of a possible precursory signal about 10 min before the earthquake.
    Beschreibung: Published
    Beschreibung: 907–917
    Beschreibung: 7A. Geofisica per il monitoraggio ambientale
    Beschreibung: JCR Journal
    Schlagwort(e): Tomography ; Gas and hydrate systems ; Earthquake interaction, forecasting, and prediction ; Seismicity and tectonics ; Volcano seismology ; Mud volcanism
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 20
    Publikationsdatum: 2017-04-04
    Beschreibung: Although there are many methods for investigating tectonic structures, many faults remain hidden, and they can endanger the life and property of people living along them. The slopes of volcanoes are covered with such hidden faults, near which strong earthquakes and gas releases can appear. Revealing hidden faults can therefore contribute significantly to the protection of people living in volcanic areas. In the study, seven different techniques were used for making measurements of in-soil radon concentrations in order to search for hidden faults on the SE flank of the Mt. Etna volcano. These reported methods had previously been proved to be useful tools for investigating fault structures. The main aim of the experiment presented here was to evaluate the usability of these methods in the geological conditions of the Mt. Etna region, and to find the best place for continual radon monitoring using a permanent station in the near future.
    Beschreibung: Published
    Beschreibung: 70-73
    Beschreibung: 5V. Sorveglianza vulcanica ed emergenze
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): Mt. Etna ; soil gas ; hidden faults ; radon ; 04. Solid Earth::04.02. Exploration geophysics::04.02.01. Geochemical exploration
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
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    Unbekannt
    Oxford University Press
    In:  EPIC3The Natural History of Crustacea, Physiology (Vol. 4), New York, Oxford University Press, 35 p., pp. 285-319, ISBN: 9780199832415
    Publikationsdatum: 2015-03-23
    Repository-Name: EPIC Alfred Wegener Institut
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  • 22
    Publikationsdatum: 2019-06-17
    Beschreibung: Automatic detection of icebergs in satellite images is regarded a useful tool to provide information necessary for safety in Arctic shipping or operations over large ocean areas in near-real time. In this work, we investigated the feasibility of automatic iceberg detection in Sentinel-1 Extra Wide Swath (EWS) SAR images which follow the preferred image mode in operational ice charting. As test region, we selected the Barents Sea where the size of many icebergs is on the order of the spatial resolution of the EWS-mode. We tested a new approach for a detection scheme. It is based on a combination of a filter for enhancing the contrast between icebergs and background, subsequent blob detection, and final application of a Constant False Alarm Rate (CFAR) algorithm. The filter relies mainly on the HV-polarized intensity which often reveals a larger difference between icebergs and sea ice or open water. The blob detector identifies locations of potential icebergs and thus shortens computation time. The final detection is performed on the identified blobs using the CFAR algorithm. About 2000 icebergs captured in fast ice were visually identified in Sentinel-2 Multi Spectral Imager (MSI) data and exploited for an assessment of the detection scheme performance using confusion matrices. For our performance tests, we used four Sentinel-1 EWS images. For judging the effect of spatial resolution, we carried out an additional test with one Sentinel-1 Interferometric Wide Swath (IWS) mode image. Our results show that only 8–22 percent of the icebergs could be detected in the EWS images, and over 90 percent of all detections were false alarms. In IWS mode, the number of correctly identified icebergs increased to 38 percent. However, we obtained a larger number of false alarms in the IWS image than in the corresponding EWS image. We identified two problems for iceberg detection: 1) with the given frequency–polarization combination, not all icebergs are strong scatterers at HV-polarization, and (2) icebergs and deformation structures present on fast ice can often not be distinguished since both may reveal equally strong responses at HV-polarization.
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  • 23
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    Unbekannt
    MDPI
    In:  EPIC3Remote Sensing, MDPI, 11(7), pp. 822, ISSN: 2072-4292
    Publikationsdatum: 2019-04-23
    Beschreibung: Thermokarst lakes in the Arctic and Subarctic release carbon from thawing permafrost in the form of methane and carbon dioxide with important implications for regional and global carbon cycles. Lake ice impedes the release of gas during the winter. For instance, bubbles released from lake sediments become trapped in downward growing lake ice, resulting in vertically-oriented bubble columns in the ice that are visible on the lake surface. We here describe a classification technique using an object-based image analysis (OBIA) framework to successfully map ebullition bubbles in airborne imagery of early winter ice on an interior Alaska thermokarst lake. Ebullition bubbles appear as white patches in high-resolution optical remote sensing images of snow-free lake ice acquired in early winter and, thus, can be mapped across whole lake areas. We used high-resolution (9–11 cm) aerial images acquired two and four days following freeze-up in the years 2011 and 2012, respectively. The design of multiresolution segmentation and region-specific classification rulesets allowed the identification of bubble features and separation from other confounding factors such as snow, submerged and floating vegetation, shadows, and open water. The OBIA technique had an accuracy of 〉95% for mapping ebullition bubble patches in early winter lake ice. Overall, we mapped 1195 and 1860 ebullition bubble patches in the 2011 and 2012 images, respectively. The percent surface area of lake ice covered with ebullition bubble patches for 2011 was 2.14% and for 2012 was 2.67%, representing a conservative whole lake estimate of bubble patches compared to ground surveys usually conducted on thicker ice 10 or more days after freeze-up. Our findings suggest that the information derived from high-resolution optical images of lake ice can supplement spatially limited field sampling methods to better estimate methane flux from individual lakes. The method can also be used to improve estimates of methane ebullition from numerous lakes within larger regions.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 24
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    Unbekannt
    Oxford University Press
    In:  EPIC3Journal of Plankton Research, Oxford University Press, 37(3), pp. 584-595, ISSN: 0142-7873
    Publikationsdatum: 2015-08-22
    Beschreibung: Plankton fractions from a saline lake in Argentina were studied using a combined trophic marker approach. A strong seasonality of biomarkers was characteristic for the different fractions, particularly the variations in the 18:4(n 2 3) and 20:4(n 2 3) fatty acids and the d13C values. The primary production in the lake was mainly driven by diatoms, reflected by the close relation of d13C, chlorophyll a and diatom fatty acid markers. The combined approach of d13C and 20:4(n 2 3) enabled processes in the lipid metabolism of the copepod Boeckella poopoensis to be inferred. The polyunsaturated fatty acid 22:6(n 2 3) and the d15N separated the trophic levels in this food web with copepods at higher trophic level. Nutritional stress and omnivory of B. poopoensis partially explained the d15N variations in mesozooplankton. The d15N signature was probably driven by cyanobacteria in the microplankton and by microbial processes in the nanoplankton fraction. Warmer temperatures may favour the saturation of microalgae fatty acids and the abundance of plankton groups richer in saturated fatty acids. The tendency to unsaturation in mesozooplankton at colder temperatures was probably influenced by diet and metabolic requirements. Future temperature increase and eutrophication-like processes may increase the importance of cyanobacterial and bacterial markers under climate change scenarios.
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  • 25
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    Unbekannt
    Oxford University Press
    In:  EPIC3ICES Journal of Marine Science, Oxford University Press, 73, pp. 772-782, ISSN: 1054-3139
    Publikationsdatum: 2016-11-30
    Beschreibung: Global warming and ocean acidification are among the most important stressors for aquatic ecosystems in the future. To investigate their direct and indirect effects on a near-natural plankton community, a multiple-stressor approach is needed. Hence, we set up mesocosms in a full-factorial design to study the effects of both warming and high CO2 on a Baltic Sea autumn plankton community, concentrating on the impacts on microzooplankton (MZP). MZP abundance, biomass, and species composition were analysed over the course of the experiment. We observed that warming led to a reduced time-lag between the phytoplankton bloom and an MZP biomass maximum. MZP showed a significantly higher growth rate and an earlier biomass peak in the warm treatments while the biomass maximum was not affected. Increased pCO2 did not result in any significant effects on MZP biomass, growth rate, or species composition irrespective of the temperature, nor did we observe any significant interactions between CO2 and temperature. We attribute this to the high tolerance of this estuarine plankton community to fluctuations in pCO2, often resulting in CO2 concentrations higher than the predicted end-of-century concentration for open oceans. In contrast, warming can be expected to directly affect MZP and strengthen its coupling with phytoplankton by enhancing its grazing pressure.
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  • 26
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Crown Copyright, 2015. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 204 (2016): 1-20, doi:10.1093/gji/ggv416.
    Beschreibung: The Canada Basin and the southern Alpha-Mendeleev ridge complex underlie a significant proportion of the Arctic Ocean, but the geology of this undrilled and mostly ice-covered frontier is poorly known. New information is encoded in seismic wide-angle reflections and refractions recorded with expendable sonobuoys between 2007 and 2011. Velocity–depth samples within the sedimentary succession are extracted from published analyses for 142 of these records obtained at irregularly spaced stations across an area of 1.9E + 06 km2. The samples are modelled at regional, subregional and station-specific scales using an exponential function of inverse velocity versus depth with regionally representative parameters determined through numerical regression. With this approach, smooth, non-oscillatory velocity–depth profiles can be generated for any desired location in the study area, even where the measurement density is low. Practical application is demonstrated with a map of sedimentary thickness, derived from seismic reflection horizons interpreted in the time domain and depth converted using the velocity–depth profiles for each seismic trace. A thickness of 12–13 km is present beneath both the upper Mackenzie fan and the middle slope off of Alaska, but the sedimentary prism thins more gradually outboard of the latter region. Mapping of the observed-to-predicted velocities reveals coherent geospatial trends associated with five subregions: the Mackenzie fan; the continental slopes beyond the Mackenzie fan; the abyssal plain; the southwestern Canada Basin; and, the Alpha-Mendeleev magnetic domain. Comparison of the subregional velocity–depth models with published borehole data, and interpretation of the station-specific best-fitting model parameters, suggests that sandstone is not a predominant lithology in any of the five subregions. However, the bulk sand-to-shale ratio likely increases towards the Mackenzie fan, and the model for this subregion compares favourably with borehole data for Miocene turbidites in the eastern Gulf of Mexico. The station-specific results also indicate that Quaternary sediments coarsen towards the Beaufort-Mackenzie and Banks Island margins in a manner that is consistent with the variable history of Laurentide Ice Sheet advance documented for these margins. Lithological factors do not fully account for the elevated velocity–depth trends that are associated with the southwestern Canada Basin and the Alpha-Mendeleev magnetic domain. Accelerated porosity reduction due to elevated palaeo-heat flow is inferred for these regions, which may be related to the underlying crustal types or possibly volcanic intrusion of the sedimentary succession. Beyond exploring the variation of an important physical property in the Arctic Ocean basin, this study provides comparative reference for global studies of seismic velocity, burial history, sedimentary compaction, seismic inversion and overpressure prediction, particularly in mudrock-dominated successions.
    Schlagwort(e): Numerical approximations and analysis ; Spatial analysis ; Controlled source seismology ; Acoustic properties ; Sedimentary basin processes ; Large igneous provinces ; Crustal structure ; Arctic region
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  • 27
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © The Author, 2015. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 203 (2015): 893-895, doi:10.1093/gji/ggv324.
    Beschreibung: The statistics of directional data on a sphere can be modelled either using the Fisher distribution that is conditioned on the magnitude being unity, in which case the sample space is confined to the unit sphere, or using the latitude–longitude marginal distribution derived from a trivariate Gaussian model that places no constraint on the magnitude. These two distributions are derived from first principles and compared. The Fisher distribution more closely approximates the uniform distribution on a sphere for a given small value of the concentration parameter, while the latitude–longitude marginal distribution is always slightly larger than the Fisher distribution at small off-axis angles for large values of the concentration parameter. Asymptotic analysis shows that the two distributions only become equivalent in the limit of large concentration parameter and very small off-axis angle.
    Schlagwort(e): Numerical approximations and analysis ; Probability distributions ; Marine magnetics and palaeomagnetics
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  • 28
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 7 (2015): 3207-3225, doi:10.1093/gbe/evv210.
    Beschreibung: High-throughput sequencing of reduced representation libraries obtained through digestion with restriction enzymes—generically known as restriction site associated DNA sequencing (RAD-seq)—is a common strategy to generate genome-wide genotypic and sequence data from eukaryotes. A critical design element of any RAD-seq study is knowledge of the approximate number of genetic markers that can be obtained for a taxon using different restriction enzymes, as this number determines the scope of a project, and ultimately defines its success. This number can only be directly determined if a reference genome sequence is available, or it can be estimated if the genome size and restriction recognition sequence probabilities are known. However, both scenarios are uncommon for nonmodel species. Here, we performed systematic in silico surveys of recognition sequences, for diverse and commonly used type II restriction enzymes across the eukaryotic tree of life. Our observations reveal that recognition sequence frequencies for a given restriction enzyme are strikingly variable among broad eukaryotic taxonomic groups, being largely determined by phylogenetic relatedness. We demonstrate that genome sizes can be predicted from cleavage frequency data obtained with restriction enzymes targeting “neutral” elements. Models based on genomic compositions are also effective tools to accurately calculate probabilities of recognition sequences across taxa, and can be applied to species for which reduced representation data are available (including transcriptomes and neutral RAD-seq data sets). The analytical pipeline developed in this study, PredRAD (https://github.com/phrh/PredRAD), and the resulting databases constitute valuable resources that will help guide the design of any study using RAD-seq or related methods.
    Beschreibung: This research was supported by the Office of Ocean Exploration and Research of the National Oceanic and Atmospheric Administration (NA09OAR4320129 to T.S.); the Division of Ocean Sciences of the National Science Foundation (OCE-1131620 to T.S.); the Astrobiology Science and Technology for Exploring Planets program of the National Aeronautics and Space Administration (NNX09AB76G to T.S.); and the Academic Programs Office (Ocean Ventures Fund to S.H.), the Ocean Exploration Institute (Fellowship support to T.M.S.), and the Ocean Life Institute of the Woods Hole Oceanographic Institution (internal grant to T.M.S. and S.H.).
    Schlagwort(e): RAD-seq ; Reduced representation sequencing ; PredRAD ; Experimental design ; Genome size prediction ; Restriction recognition sequence probability
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  • 29
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sathyendranath, S., Brewin, R. J. W., Brockmann, C., Brotas, V., Calton, B., Chuprin, A., Cipollini, P., Couto, A. B., Dingle, J., Doerffer, R., Donlon, C., Dowell, M., Farman, A., Grant, M., Groom, S., Horseman, A., Jackson, T., Krasemann, H., Lavender, S., Martinez-Vicente, V., Mazeran, C., Melin, F., Moore, T. S., Muller, D., Regner, P., Roy, S., Steele, C. J., Steinmetz, F., Swinton, J., Taberner, M., Thompson, A., Valente, A., Zuhlke, M., Brando, V. E., Feng, H., Feldman, G., Franz, B. A., Frouin, R., Gould, R. W., Hooker, S. B., Kahru, M., Kratzer, S., Mitchell, B. G., Muller-Karger, F. E., Sosik, H. M., Voss, K. J., Werdell, J., & Platt, T. An ocean-colour time series for use in climate studies: The experience of the ocean-colour climate change initiative (OC-CCI). Sensors, 19(19), (2019): 4285, doi: 10.3390/s19194285.
    Beschreibung: Ocean colour is recognised as an Essential Climate Variable (ECV) by the Global Climate Observing System (GCOS); and spectrally-resolved water-leaving radiances (or remote-sensing reflectances) in the visible domain, and chlorophyll-a concentration are identified as required ECV products. Time series of the products at the global scale and at high spatial resolution, derived from ocean-colour data, are key to studying the dynamics of phytoplankton at seasonal and inter-annual scales; their role in marine biogeochemistry; the global carbon cycle; the modulation of how phytoplankton distribute solar-induced heat in the upper layers of the ocean; and the response of the marine ecosystem to climate variability and change. However, generating a long time series of these products from ocean-colour data is not a trivial task: algorithms that are best suited for climate studies have to be selected from a number that are available for atmospheric correction of the satellite signal and for retrieval of chlorophyll-a concentration; since satellites have a finite life span, data from multiple sensors have to be merged to create a single time series, and any uncorrected inter-sensor biases could introduce artefacts in the series, e.g., different sensors monitor radiances at different wavebands such that producing a consistent time series of reflectances is not straightforward. Another requirement is that the products have to be validated against in situ observations. Furthermore, the uncertainties in the products have to be quantified, ideally on a pixel-by-pixel basis, to facilitate applications and interpretations that are consistent with the quality of the data. This paper outlines an approach that was adopted for generating an ocean-colour time series for climate studies, using data from the MERIS (MEdium spectral Resolution Imaging Spectrometer) sensor of the European Space Agency; the SeaWiFS (Sea-viewing Wide-Field-of-view Sensor) and MODIS-Aqua (Moderate-resolution Imaging Spectroradiometer-Aqua) sensors from the National Aeronautics and Space Administration (USA); and VIIRS (Visible and Infrared Imaging Radiometer Suite) from the National Oceanic and Atmospheric Administration (USA). The time series now covers the period from late 1997 to end of 2018. To ensure that the products meet, as well as possible, the requirements of the user community, marine-ecosystem modellers, and remote-sensing scientists were consulted at the outset on their immediate and longer-term requirements as well as on their expectations of ocean-colour data for use in climate research. Taking the user requirements into account, a series of objective criteria were established, against which available algorithms for processing ocean-colour data were evaluated and ranked. The algorithms that performed best with respect to the climate user requirements were selected to process data from the satellite sensors. Remote-sensing reflectance data from MODIS-Aqua, MERIS, and VIIRS were band-shifted to match the wavebands of SeaWiFS. Overlapping data were used to correct for mean biases between sensors at every pixel. The remote-sensing reflectance data derived from the sensors were merged, and the selected in-water algorithm was applied to the merged data to generate maps of chlorophyll concentration, inherent optical properties at SeaWiFS wavelengths, and the diffuse attenuation coefficient at 490 nm. The merged products were validated against in situ observations. The uncertainties established on the basis of comparisons with in situ data were combined with an optical classification of the remote-sensing reflectance data using a fuzzy-logic approach, and were used to generate uncertainties (root mean square difference and bias) for each product at each pixel.
    Beschreibung: This work was funded by the Ocean Colour Climate Change initiative of the European Space Agency (Grant Number 4000101437/10/I-LG). We acknowledge additional funding support by NERC through the National Centre for Earth Observation (Grant Number PR140015). Additional funding from a Simons Foundation Grant (549947, SS) is also gratefully acknowledged. V.B. also acknowledges funding from the European Union’s Horizon 2020 Research and Innovation Programme grant agreement N_ 810139: Project Portugal Twinning for Innovation and Excellence in Marine Science and Earth Observation – PORTWIMS.
    Schlagwort(e): ocean colour ; water-leaving radiance ; remote-sensing reflectance ; phytoplankton ; chlorophyll-a ; inherent optical properties ; Climate Change Initiative ; optical water classes ; Essential Climate Variable ; uncertainty characterisation
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  • 30
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © The Author(s), 2015. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 203 (2015): 1-21, doi:10.1093/gji/ggv251.
    Beschreibung: We examine along-axis variations in melt content of the axial magma lens (AML) beneath the fast-spreading East Pacific Rise (EPR) using an amplitude variation with angle of incidence (AVA) crossplotting method applied to multichannel seismic data acquired in 2008. The AVA crossplotting method, which has been developed for and, so far, applied for hydrocarbon prospection in sediments, is for the first time applied to a hardrock environment. We focus our analysis on 2-D data collected along the EPR axis from 9°29.8′N to 9°58.4′N, a region which encompasses the sites of two well-documented submarine volcanic eruptions (1991–1992 and 2005–2006). AVA crossplotting is performed for a ∼53 km length of the EPR spanning nine individual AML segments (ranging in length from ∼3.2 to 8.5 km) previously identified from the geometry of the AML and disruptions in continuity. Our detailed analyses conducted at 62.5 m interval show that within most of the analysed segments melt content varies at spatial scales much smaller (a few hundred of metres) than the length of the fine-scale AML segments, suggesting high heterogeneity in melt concentration. At the time of our survey, about 2 yr after the eruption, our results indicate that the three AML segments that directly underlie the 2005–2006 lava flow are on average mostly molten. However, detailed analysis at finer-scale intervals for these three segments reveals AML pockets (from 〉62.5 to 812.5 m long) with a low melt fraction. The longest such mushy section is centred beneath the main eruption site at ∼9°50.4′N, possibly reflecting a region of primary melt drainage during the 2005–2006 event. The complex geometry of fluid flow pathways within the crust above the AML and the different response times of fluid flow and venting to eruption and magma reservoir replenishment may contribute to the poor spatial correlation between incidence of hydrothermal vents and presence of highly molten AML. The presented results are an important step forward in our ability to resolve small-scale characteristics of the AML and recommend the AVA crossplotting as a tool for examining mid-ocean ridge magma-systems elsewhere.
    Beschreibung: This research was supported by NSF awards OCE0327872 to J.C.M. and S.M.C., OCE-0327885 to J.P.C., and OCE0624401 to M.R.N.
    Schlagwort(e): Mid-ocean ridge processes ; Submarine tectonics and volcanism ; Crustal structure ; Physics of magma and magma bodies
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  • 31
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nucleic Acids Research 44 (2016): e157, doi:10.1093/nar/gkw738.
    Beschreibung: Site-directed RNA editing (SDRE) is a strategy to precisely alter genetic information within mRNAs. By linking the catalytic domain of the RNA editing enzyme ADAR to an antisense guide RNA, specific adenosines can be converted to inosines, biological mimics for guanosine. Previously, we showed that a genetically encoded iteration of SDRE could target adenosines expressed in human cells, but not efficiently. Here we developed a reporter assay to quantify editing, and used it to improve our strategy. By enhancing the linkage between ADAR's catalytic domain and the guide RNA, and by introducing a mutation in the catalytic domain, the efficiency of converting a UAG premature termination codon (PTC) to tryptophan (UGG) was improved from ∼11% to ∼70%. Other PTCs were edited, but less efficiently. Numerous off-target edits were identified in the targeted mRNA, but not in randomly selected endogenous messages. Off-target edits could be eliminated by reducing the amount of guide RNA with a reduction in on-target editing. The catalytic rate of SDRE was compared with those for human ADARs on various substrates and found to be within an order of magnitude of most. These data underscore the promise of site-directed RNA editing as a therapeutic or experimental tool.
    Beschreibung: National Institutes of Health [1R0111223855, 1R01NS64259]; Cystic Fibrosis Foundation Therapeutics [Rosent14XXO]; Infrastructural support was provided by the National Institutes of Health [NIGMS 1P20GM103642, NIMHD 8G12-MD007600]; National Science Foundation [DBI 0115825, DBI 1337284]; Department of Defense [52680-RT-ISP].
    Repository-Name: Woods Hole Open Access Server
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  • 32
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    MDPI
    In:  EPIC3Atmosphere, MDPI, 10(12), ISSN: 2073-4433
    Publikationsdatum: 2020-04-14
    Beschreibung: The heat imbalance is the fundamental driver for the atmospheric circulation. Therefore, it is crucially important to understand how it responds to global warming. In this study, the role of the ocean in reshaping the atmospheric meridional heat imbalance is explored based on observations and climate simulations. We found that ocean tends to strengthen the meridional heat imbalance over the mid-latitudes. This is primarily because of the uneven ocean heat uptake between the subtropical and subpolar oceans. Under global warming, the subtropical ocean absorbs relatively less heat as the water there is well stratified. In contrast, the subpolar ocean is the primary region where the ocean heat uptake takes place, because the subpolar ocean is dominated by upwelling, strong mixing, and overturning circulation. We propose that the enhanced meridional heat imbalance may potentially contribute to strengthening the water cycle, westerlies, jet stream, and mid-latitude storms.
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  • 33
    Publikationsdatum: 2021-11-09
    Beschreibung: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2019. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Beschreibung: The Amatrice–Norcia–Visso sequence is characterized by complex behaviour that is somewhat atypical of main-shock–aftershock sequences, as there were multiple large main shocks that continued for months. In this study we focus on the Amatrice sequence (main shock 2016 August 24, Mw = 5.97) to evaluate the apparent stress values and magnitude-dependent scaling in order to improve our knowledge of processes that control small and large earthquakes within this active region of Italy. Apparent stress is proportional to the ratio of radiated seismic energy and seismic moment, and as such, these stress parameters play an important role in hazard prediction as they have a strong effect on the observed and predicted ground shaking. We analyse 83 events of the sequence from 2016 August 24 to October 16, within a radius of 20 km from the main shock and with an Mw ranging between 5.97 and 2.72. Taking advantage of the averaging nature of coda waves, we analyse coda-envelope-based spectral ratios between neighbouring event pairs.We use equations proposed byWalter et al. to consider stable, low-frequency and high-frequency spectral ratio levelswhich provide measures of the corner frequency and apparent stress ratios of the events within the sequence. The results demonstrate non-self-similar behaviour within the sequence, suggesting a change in dynamics between the largest events and the smaller aftershocks. The apparent stress and corner frequency estimates are compared to those obtained by Malagnini and Munaf`o who utilized hundreds of direct S-wave spectral ratio measurements to obtain their results. Although our analysis is based only on 83 events, our results are in very good agreement, demonstrating once more that the use of coda waves is very stable and provides lower variance measures than those using direct waves. A comparison with recent Central Apennines source scaling models derived from various seismic sequences (1997–1998 Colfiorito, 2002 San Giuliano di Puglia, 2009 L’Aquila) shows that the Amatrice sequence source scaling in this study is well represented by the models proposed by Pacor et al. and Malagnini and Mayeda.
    Beschreibung: Published
    Beschreibung: 446-455
    Beschreibung: 3T. Sorgente sismica
    Beschreibung: JCR Journal
    Schlagwort(e): Coda waves; Earthquake dynamics; Earthquake source observations; Amatrice ; earthquake stress parameters
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 34
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bioinformatics 31 (2015): 1872-1874, doi:10.1093/bioinformatics/btv045.
    Beschreibung: The association of organisms to their environments is a key issue in exploring biodiversity patterns. This knowledge has traditionally been scattered, but textual descriptions of taxa and their habitats are now being consolidated in centralized resources. However, structured annotations are needed to facilitate large-scale analyses. Therefore, we developed ENVIRONMENTS, a fast dictionary-based tagger capable of identifying Environment Ontology (ENVO) terms in text. We evaluate the accuracy of the tagger on a new manually curated corpus of 600 Encyclopedia of Life (EOL) species pages. We use the tagger to associate taxa with environments by tagging EOL text content monthly, and integrate the results into the EOL to disseminate them to a broad audience of users.
    Beschreibung: The Encyclopedia Of Life Rubenstein Fellows Program [CRDF EOL-33066-13/E33066], the LifeWatchGreece Research Infrastructure [384676-94/GSRT/ NSRF(C&E)] and the Novo Nordisk Foundation Center for Protein Research [NNF14CC0001].
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  • 35
    Publikationsdatum: 2022-07-04
    Beschreibung: The Arctic is directly impacted by climate change. The increase in air temperature drives the thawing of permafrost and an increase in coastal erosion and river discharge. This leads to a greater input of sediment and organic matter into coastal waters, which substantially impacts the ecosystems, the subsistence economy of the local population, and the climate because of the transformation of organic matter into greenhouse gases. Yet, the patterns of sediment dispersal in the nearshore zone are not well known, because ships do not often reach shallow waters and satellite remote sensing is traditionally focused on less dynamic environments. The goal of this study is to use the extensive Landsat archive to investigate sediment dispersal patterns specifically on an exemplary Arctic nearshore environment, where field measurements are often scarce. Multiple Landsat scenes were combined to calculate means of sediment dispersal and sea surface temperature under changing seasonal wind conditions in the nearshore zone of Herschel Island Qikiqtaruk in the western Canadian Arctic since 1982. We use observations in the Landsat red and thermal wavebands, as well as a recently published water turbidity algorithm to relate archive wind data to turbidity and sea surface temperature. We map the spatial patterns of turbidity and water temperature at high spatial resolution in order to resolve transport pathways of water and sediment at the water surface. Our results show that these pathways are clearly related to the prevailing wind conditions, being ESE and NW. During easterly wind conditions, both turbidity and water temperature are significantly higher in the nearshore area. The extent of the Mackenzie River plume and coastal erosion are the main explanatory variables for sediment dispersal and sea surface temperature distributions in the study area. During northwesterly wind conditions, the influence of the Mackenzie River plume is negligible. Our results highlight the potential of high spatial resolution Landsat imagery to detect small-scale hydrodynamic processes, but also show the need to specifically tune optical models for Arctic nearshore environments.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 36
    Publikationsdatum: 2022-06-20
    Beschreibung: Time-variable gravity measurements from the Gravity Recovery and Climate Experiment (GRACE) and GRACE-Follow On (GRACE-FO) missions and satellite altimetry measurements from CryoSat-2 enable independent mass balance estimates of the Earth’s glaciers and ice sheets. Both approaches vary in terms of their retrieval principles and signal-to-noise characteristics. GRACE/GRACE-FO recovers the gravity disturbance caused by changes in the mass of the entire ice sheet with a spatial resolution of 300 to 400 km. In contrast, CryoSat-2measures travel times of a radar signal reflected close to the ice sheet surface, allowing changes of the surface topography to be determined with about 5 km spatial resolution. Here, we present a method to combine observations from the both sensors, taking into account the different signal and noise characteristics of each satellite observation that are dependent on the spatial wavelength. We include uncertainties introduced by the processing and corrections, such as the choice of the re-tracking algorithm and the snow/ice volume density model for CryoSat-2, or the filtering of correlated errors and the correction for glacial-isostatic adjustment (GIA) for GRACE. We apply our method to the Antarctic ice sheet and the time period 2011–2017, in which GRACE and CryoSat-2 were simultaneously operational, obtaining a total ice mass loss of 178 ± 23 Gt yr−1. We present a map of the rate of mass change with a spatial resolution of 40 km that is evaluable across all spatial scales, and more precise than estimates based on a single satellite mission.
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  • 37
    Publikationsdatum: 2022-05-06
    Beschreibung: This work focuses on the study of land subsidence processes by means of multi-temporal and multi-frequency InSAR techniques. Specifically, we retrieve the long-term evolution (2003–2018) of the creeping phenomenon producing ground fissuring in the Ciudad Guzmán (Jalisco state, Mexico) urban area. The city is located on the northern side of the Volcan de Colima area, one of the most active Mexican volcanoes. On September 21 2012, Ciudad Guzmán was struck by ground fissures of about 1.5 km of length, causing the deformation of the roads and the propagation of fissures in adjacent buildings. The field surveys showed that fissures follow the escarpments produced during the central Mexico September 19 1985 Mw 8.1 earthquake. We extended the SAR (Synthetic Aperture Radar) interferometric monitoring starting with the multi-temporal analysis of ENVISAT and COSMO-SkyMed datasets, allowing the monitoring of the observed subsidence phenomena a ecting the Mexican city. We processed a new stack of Sentinel-1 TOPSAR acquisition mode images along both descending and ascending paths and spanning the 2016–2018 temporal period. The resulting long-term trend observed by satellites, together with data from volcanic bulletin and in situ surveys, seems to suggest that the subsidence is due to the exploitation of the aquifers and that the spatial arrangement of ground deformation is controlled by the position of buried faults.
    Beschreibung: Published
    Beschreibung: id 2246
    Beschreibung: 2T. Deformazione crostale attiva
    Beschreibung: JCR Journal
    Schlagwort(e): subsidence ; multi-temporal analysis ; PS ; SBAS ; InSAR ; urban monitoring ; buried faults
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 38
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Farris, A. S., Defne, Z., & Ganju, N. K. Identifying salt marsh shorelines from remotely sensed elevation data and imagery. Remote Sensing, 11(15), (2019): 1795, doi: 10.3390/rs11151795.
    Beschreibung: Salt marshes are valuable ecosystems that are vulnerable to lateral erosion, submergence, and internal disintegration due to sea level rise, storms, and sediment deficits. Because many salt marshes are losing area in response to these factors, it is important to monitor their lateral extent at high resolution over multiple timescales. In this study we describe two methods to calculate the location of the salt marsh shoreline. The marsh edge from elevation data (MEED) method uses remotely sensed elevation data to calculate an objective proxy for the shoreline of a salt marsh. This proxy is the abrupt change in elevation that usually characterizes the seaward edge of a salt marsh, designated the “marsh scarp.” It is detected as the maximum slope along a cross-shore transect between mean high water and mean tide level. The method was tested using lidar topobathymetric and photogrammetric elevation data from Massachusetts, USA. The other method to calculate the salt marsh shoreline is the marsh edge by image processing (MEIP) method which finds the unvegetated/vegetated line. This method applies image classification techniques to multispectral imagery and elevation datasets for edge detection. The method was tested using aerial imagery and coastal elevation data from the Plum Island Estuary in Massachusetts, USA. Both methods calculate a line that closely follows the edge of vegetation seen in imagery. The two methods were compared to each other using high resolution unmanned aircraft systems (UAS) data, and to a heads-up digitized shoreline. The root-mean-square deviation was 0.6 meters between the two methods, and less than 0.43 meters from the digitized shoreline. The MEIP method was also applied to a lower resolution dataset to investigate the effect of horizontal resolution on the results. Both methods provide an accurate, efficient, and objective way to track salt marsh shorelines with spatially intensive data over large spatial scales, which is necessary to evaluate geomorphic change and wetland vulnerability.
    Beschreibung: This project was supported by the U.S. Geological Survey (USGS) Coastal/Marine Natural Hazards and Resources Program as well as the Massachusetts O ce of Coastal Zone Management under interagency agreement 16ENMALQ006000.
    Schlagwort(e): Marsh edge ; Marsh shoreline ; Unmanned aircraft system ; UAS ; UAV ; Drone ; Lidar ; Salt marsh ; Coastal wetlands ; Plum Island
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  • 39
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 1822-1837, doi: 10.1093/gji/ggz253.
    Beschreibung: Joint inversion of multiple electromagnetic data sets, such as controlled source electromagnetic and magnetotelluric data, has the potential to significantly reduce uncertainty in the inverted electrical resistivity when the two data sets contain complementary information about the subsurface. However, evaluating quantitatively the model uncertainty reduction is made difficult by the fact that conventional inversion methods—using gradients and model regularization—typically produce just one model, with no associated estimate of model parameter uncertainty. Bayesian inverse methods can provide quantitative estimates of inverted model parameter uncertainty by generating an ensemble of models, sampled proportional to data fit. The resulting posterior distribution represents a combination of a priori assumptions about the model parameters and information contained in field data. Bayesian inversion is therefore able to quantify the impact of jointly inverting multiple data sets by using the statistical information contained in the posterior distribution. We illustrate, for synthetic data generated from a simple 1-D model, the shape of parameter space compatible with controlled source electromagnetic and magnetotelluric data, separately and jointly. We also demonstrate that when data sets contain complementary information about the model, the region of parameter space compatible with the joint data set is less than or equal to the intersection of the regions compatible with the individual data sets. We adapt a trans-dimensional Markov chain Monte Carlo algorithm for jointly inverting multiple electromagnetic data sets for 1-D earth models and apply it to surface-towed controlled source electromagnetic and magnetotelluric data collected offshore New Jersey, USA, to evaluate the extent of a low salinity aquifer within the continental shelf. Our inversion results identify a region of high resistivity of varying depth and thickness in the upper 500 m of the continental shelf, corroborating results from a previous study that used regularized, gradient-based inversion methods. We evaluate the joint model parameter uncertainty in comparison to the uncertainty obtained from the individual data sets and demonstrate quantitatively that joint inversion offers reduced uncertainty. In addition, we show how the Bayesian model ensemble can subsequently be used to derive uncertainty estimates of pore water salinity within the low salinity aquifer.
    Beschreibung: We gratefully acknowledge funding support from National Science Foundation grants 1458392 and 1459035. We thank the captain and crew of the R.V. Marcus G. Langseth for a successful cruise and the Marine EM Lab at Scripps Institution of Oceanography for providing the instrumentation. We also thank Chris Armerding, Marah Dahn, John Desanto, Jimmy Elsenbeck, Matt Folsom, Keiichi Ishizu, Jeff Pepin, Charlotte Wiman and Georgie Zelenak for participating in the cruise. We gratefully acknowledge Alberto Malinverno for the idea to use a Monte Carlo scheme to estimate the distribution of pore fluid salinity, and William Menke for many constructive conversations and suggestions.
    Schlagwort(e): Controlled source electromagnetics (CSEM) ; Joint inversion ; Magnetotellurics ; Statistical methods ; Marine electromagnetics ; Probability distributions
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  • 40
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 2122-2135, doi: 10.1093/gji/ggz272.
    Beschreibung: We have conducted the first passive Ocean Bottom Seismograph (OBS) experiment near the Challenger Deep at the southernmost Mariana subduction zone by deploying and recovering an array of 6 broad-band OBSs during December 2016–June 2017. The obtained passive-source seismic records provide the first-ever near-field seismic observations in the southernmost Mariana subduction zone. We first correct clock errors of the OBS recordings based on both teleseismic waveforms and ambient noise cross-correlation. We then perform matched filter earthquake detection using 53 template events in the catalogue of the US Geological Survey and find 〉7000 local earthquakes during the 6-month OBS deployment period. Results of the two independent approaches show that the maximum clock drifting was ∼2 s on one instrument (OBS PA01), while the rest of OBS waveforms had negligible time drifting. After timing correction, we locate the detected earthquakes using a newly refined local velocity model that was derived from a companion active source experiment in the same region. In total, 2004 earthquakes are located with relatively high resolution. Furthermore, we calibrate the magnitudes of the detected earthquakes by measuring the relative amplitudes to their nearest relocated templates on all OBSs and acquire a high-resolution local earthquake catalogue. The magnitudes of earthquakes in our new catalogue range from 1.1 to 5.6. The earthquakes span over the Southwest Mariana rift, the megathrust interface, forearc and outer-rise regions. While most earthquakes are shallow, depths of the slab earthquakes increase from ∼100 to ∼240 km from west to east towards Guam. We also delineate the subducting interface from seismicity distribution and find an increasing trend in dip angles from west to east. The observed along-strike variation in slab dip angles and its downdip extents provide new constraints on geodynamic processes of the southernmost Mariana subduction zone.
    Beschreibung: We express our appreciation to the science parties and crew members of the R/V Shiyan 3 for deployment and collection of the OBS instruments during the Mariana expeditions. This study is supported by the Hong Kong Research Grant Council Grants (No. 14313816), Faculty of Science at CUHK, Chinese Academy of Sciences (No. Y4SL021001, QYZDY-SSW-DQC005, 133244KYSB20180029), the National Natural Science Foundation of China (No. 41890813, 91628301, 41676042, U1701641, 41576041, 91858207 and U1606401), the National Key R&D Program of China (2018YFC0309800 and 2018YFC0310100). Generic Mapping Tools (Wessel & Smith 1991) and PSSAC (developed by Prof Lupei Zhu) are used for data analysis and figure preparation in this study. Constructive comments from Dr Lidong Bie and two anonymous reviewers are helpful in improving the manuscript.
    Schlagwort(e): Seismicity and tectonics ; Dynamics: seismotectonics ; Subduction zone processes
    Repository-Name: Woods Hole Open Access Server
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  • 41
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Costello, J. H., Colin, S. P., Gemmell, B. J., & Dabiri, J. O. Hydrodynamics of vortex generation during bell contraction by the hydromedusa Eutonina indicans (Romanes, 1876). Biomimetics, 4(3), (2019): 44, doi:10.3390/biomimetics4030044.
    Beschreibung: Swimming bell kinematics and hydrodynamic wake structures were documented during multiple pulsation cycles of a Eutonina indicans (Romanes, 1876) medusa swimming in a predominantly linear path. Bell contractions produced pairs of vortex rings with opposite rotational sense. Analyses of the momentum flux in these wake structures demonstrated that vortex dynamics related directly to variations in the medusa swimming speed. Furthermore, a bulk of the momentum flux in the wake was concentrated spatially at the interfaces between oppositely rotating vortices rings. Similar thrust-producing wake structures have been described in models of fish swimming, which posit vortex rings as vehicles for energy transport from locations of body bending to regions where interacting pairs of opposite-sign vortex rings accelerate the flow into linear propulsive jets. These findings support efforts toward soft robotic biomimetic propulsion
    Beschreibung: This research was supported by awards from the National Science Foundation (1536672, 1511721 to J.H.C.; 1536688, 1510929 to S.P.C., 1511996 to B.J.G. and 1511333 to J.O.D.).
    Schlagwort(e): Swimming ; Vortex rings ; Wakes
    Repository-Name: Woods Hole Open Access Server
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  • 42
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Estrada-Gomez, S., Caldas Cardoso, F., Johana Vargas-Munoz, L., Carlos Quintana-Castillo, J., Arenas Gomez, C. M., Steffany Pineda, S., & Maria Saldarriaga-Cordoba, M. Venomic, transcriptomic, and bioactivity analyses of Pamphobeteus verdolaga venom reveal complex disulfide-rich peptides that modulate calcium channels. Toxins, 11(9), (2019): 496, doi:10.3390/toxins11090496.
    Beschreibung: Pamphobeteus verdolaga is a recently described Theraphosidae spider from the Andean region of Colombia. Previous reports partially characterized its venom profile. In this study, we conducted a detailed analysis that includes reversed-phase high-performance liquid chromatography (rp-HPLC), calcium influx assays, tandem mass spectrometry analysis (tMS/MS), and venom-gland transcriptome. rp-HPLC fractions of P. verdolaga venom showed activity on CaV2.2, CaV3.2, and NaV1.7 ion channels. Active fractions contained several peptides with molecular masses ranging from 3399.4 to 3839.6 Da. The tMS/MS analysis of active fraction displaying the strongest activity to inhibit calcium channels showed sequence fragments similar to one of the translated transcripts detected in the venom-gland transcriptome. The putative peptide of this translated transcript corresponded to a toxin, here named ω-theraphositoxin-Pv3a, a potential ion channel modulator toxin that is, in addition, very similar to other theraphositoxins affecting calcium channels (i.e., ω-theraphotoxin-Asp1a). Additionally, using this holistic approach, we found that P. verdolaga venom is an important source of disulfide-rich proteins expressing at least eight superfamilies.
    Schlagwort(e): Theraphosidae ; Pamphobeteus ; Peptides ; Disulfide-rich peptide (DRP) ; Inhibitory cysteine knot (ICK) ; Venomics ; Transcriptome ; Ion channels
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  • 43
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Boss, E., Sherwood, C. R., Hill, P., & Milligan, T. Advantages and limitations to the use of optical measurements to study sediment properties. Applied Sciences-Basel, 8(12), (2018):2692, doi:10.3390/app8122692.
    Beschreibung: Measurements of optical properties have been used for decades to study particle distributions in the ocean. They are useful for estimating suspended mass concentration as well as particle-related properties such as size, composition, packing (particle porosity or density), and settling velocity. Measurements of optical properties are, however, biased, as certain particles, because of their size, composition, shape, or packing, contribute to a specific property more than others. Here, we study this issue both theoretically and practically, and we examine different optical properties collected simultaneously in a bottom boundary layer to highlight the utility of such measurements. We show that the biases we are likely to encounter using different optical properties can aid our studies of suspended sediment. In particular, we investigate inferences of settling velocity from vertical profiles of optical measurements, finding that the effects of aggregation dynamics can seldom be ignored.
    Beschreibung: This work was supported by the Office of Naval Research and the United States Geological Survey Coastal and Marine Geology Program. The unique instrument platform and data acquisition system was designed and built by technical staff lead by Marinna Martini at the United States Geological Survey Woods Hole Coastal and Marine Science Center. This team was also responsible for deployment and recovery of the instrumentation. We thank the Woods Hole Oceanographic Institution (WHOI) MVCO staff for support during this experiment, and we thank the captains and crews of the R/V Connecticut and the R/V Tioga. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the United States Government. This paper has benefited significantly from insightful comments from D. Stramski, A. Aretxabaleta and two anonymous reviewers.
    Schlagwort(e): Particle dynamics ; Optical properties ; Suspended sediment
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  • 44
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Signell, R. P., & Pothina, D. Analysis and visualization of coastal ocean model data in the cloud. Journal of Marine Science and Engineering, 7(4), (2019);110, doi:10.3390/jmse7040110.
    Beschreibung: The traditional flow of coastal ocean model data is from High-Performance Computing (HPC) centers to the local desktop, or to a file server where just the needed data can be extracted via services such as OPeNDAP. Analysis and visualization are then conducted using local hardware and software. This requires moving large amounts of data across the internet as well as acquiring and maintaining local hardware, software, and support personnel. Further, as data sets increase in size, the traditional workflow may not be scalable. Alternatively, recent advances make it possible to move data from HPC to the Cloud and perform interactive, scalable, data-proximate analysis and visualization, with simply a web browser user interface. We use the framework advanced by the NSF-funded Pangeo project, a free, open-source Python system which provides multi-user login via JupyterHub and parallel analysis via Dask, both running in Docker containers orchestrated by Kubernetes. Data are stored in the Zarr format, a Cloud-friendly n-dimensional array format that allows performant extraction of data by anyone without relying on data services like OPeNDAP. Interactive visual exploration of data on complex, large model grids is made possible by new tools in the Python PyViz ecosystem, which can render maps at screen resolution, dynamically updating on pan and zoom operations. Two examples are given: (1) Calculating the maximum water level at each grid cell from a 53-GB, 720-time-step, 9-million-node triangular mesh ADCIRC simulation of Hurricane Ike; (2) Creating a dashboard for visualizing data from a curvilinear orthogonal COAWST/ROMS forecast model.
    Beschreibung: This research benefited from National Science Foundation grant number 1740648, and EarthSim project was funded by ERDC projects PETTT BY17-094SP and PETTT BY16-091SP. This project also benefited from research credits granted by Amazon.
    Schlagwort(e): Ocean modeling ; Cloud computing ; Data analysis ; Geospatial data visualization
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  • 45
    Publikationsdatum: 2022-10-27
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Goodwin, J. D., Munroe, D. M., Defne, Z., Ganju, N. K., & Vasslides, J. Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay. Journal of Marine Science and Engineering, 7(6), (2019): 167, doi:10.3390/jmse7060167.
    Beschreibung: Many marine organisms have a well-known adult sessile stage. Unfortunately, our lack of knowledge regarding their larval transient stage hinders our understanding of their basic ecology and connectivity. Larvae can have swimming behavior that influences their transport within the marine environment. Understanding the larval stage provides insight into population connectivity that can help strategically identify areas for restoration. Current techniques for understanding the larval stage include modeling that combines particle attributes (e.g., larval behavior) with physical processes of water movement to contribute to our understanding of connectivity trends. This study builds on those methods by using a previously developed retention clock matrix (RCM) to illustrate time dependent connectivity of two species of shellfish between areas and over a range of larval durations. The RCM was previously used on physical parameters but we expand the concept by applying it to biology. A new metric, difference RCM (DRCM), is introduced to quantify changes in connectivity under different scenarios. Broad spatial trends were similar for all behavior types with a general south to north progression of particles. The DRCMs illustrate differences between neutral particles and those with behavior in northern regions where stratification was higher, indicating that larval behavior influenced transport. Based on these findings, particle behavior led to small differences (north to south movement) in transport patterns in areas with higher salinity gradients (the northern part of the system) compared to neutral particles. Overall, the dominant direction for particle movement was from south to north, which at times was enhanced by winds from the south. Clam and oyster restoration in the southern portion of Barnegat Bay could serve as a larval supply for populations in the north. These model results show that coupled hydrodynamic and particle tracking models have implications for fisheries management and restoration activities.
    Beschreibung: This work is supported by the Barnegat Bay Partnership EPA grants CE98212311, CE98212312. We extend our deep thanks to anonymous reviewers and Lisa Lucas who provided thoughtful input that improved the manuscript. We thank Matthew Kozak and Ian Mitchell for technical advice and Elizabeth North for LTRANS guidance. Joe Caracapa and Jennifer Gius provided help running remote simulations. COAST model source code is available at https://code.usgs.gov/coawstmodel/COAWST [50]. The hydrodynamic model outoput is available at: http://geoport.whoi.edu/thredds/catalog/clay/usgs/users/zdefne/GRL/catalog.html [21] and particle tracking model outputs are available from the corresponding author upon request.
    Schlagwort(e): Bivalve connectivity ; Larval transport ; Modeling ; Retention clock ; RCM ; ROMS ; LTRANS ; Barnegat Bay ; Hard clam ; Eastern oyster
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  • 46
    Publikationsdatum: 2022-10-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Le Roux, V., & Liang, Y. Ophiolitic pyroxenites record boninite percolation in subduction zone mantle. Minerals, 9(9), (2019): 565, doi: 10.3390/min9090565.
    Beschreibung: The peridotite section of supra-subduction zone ophiolites is often crosscut by pyroxenite veins, reflecting the variety of melts that percolate through the mantle wedge, react, and eventually crystallize in the shallow lithospheric mantle. Understanding the nature of parental melts and the timing of formation of these pyroxenites provides unique constraints on melt infiltration processes that may occur in active subduction zones. This study deciphers the processes of orthopyroxenite and clinopyroxenite formation in the Josephine ophiolite (USA), using new trace and major element analyses of pyroxenite minerals, closure temperatures, elemental profiles, diffusion modeling, and equilibrium melt calculations. We show that multiple melt percolation events are required to explain the variable chemistry of peridotite-hosted pyroxenite veins, consistent with previous observations in the xenolith record. We argue that the Josephine ophiolite evolved in conditions intermediate between back-arc and sub-arc. Clinopyroxenites formed at an early stage of ophiolite formation from percolation of high-Ca boninites. Several million years later, and shortly before exhumation, orthopyroxenites formed through remelting of the Josephine harzburgites through percolation of ultra-depleted low-Ca boninites. Thus, we support the hypothesis that multiple types of boninites can be created at different stages of arc formation and that ophiolitic pyroxenites uniquely record the timing of boninite percolation in subduction zone mantle.
    Beschreibung: This study was supported by National Science Foundation grants EAR-1220440 to V.L.R. and EAR-1624516 to Y.L. We thank the reviewers for their helpful suggestions, as well as Taylor Hough, Gretchen Swarr, Alberto Saal, Soumen Mallick, and Nilanjan Chatterjee for help with LA-ICP-MS and EPMA analyses, and Mark Kurz for help with sample collection.
    Schlagwort(e): Ophiolite ; Boninite ; Pyroxenite ; Josephine peridotite ; REE temperatures ; Diffusion ; Melt percolation ; Subduction zones
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  • 47
    facet.materialart.
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    MDPI
    In:  EPIC3Remote Sensing, MDPI, 11, pp. 1730
    Publikationsdatum: 2022-08-12
    Beschreibung: The Arctic-Boreal regions experience strong changes of air temperature and precipitation regimes, which affect the thermal state of the permafrost. This results in widespread permafrost-thaw disturbances, some unfolding slowly and over long periods, others occurring rapidly and abruptly. Despite optical remote sensing offering a variety of techniques to assess and monitor landscape changes, a persistent cloud cover decreases the amount of usable images considerably. However, combining data from multiple platforms promises to increase the number of images drastically. We therefore assess the comparability of Landsat-8 and Sentinel-2 imagery and the possibility to use both Landsat and Sentinel-2 images together in time series analyses, achieving a temporally-dense data coverage in Arctic-Boreal regions. We determined overlapping same-day acquisitions of Landsat-8 and Sentinel-2 images for three representative study sites in Eastern Siberia. We then compared the Landsat-8 and Sentinel-2 pixel-pairs, downscaled to 60 m, of corresponding bands and derived the ordinary least squares regression for every band combination. The acquired coefficients were used for spectral bandpass adjustment between the two sensors. The spectral band comparisons showed an overall good fit between Landsat-8 and Sentinel-2 images already. The ordinary least squares regression analyses underline the generally good spectral fit with intercept values between 0.0031 and 0.056 and slope values between 0.531 and 0.877. A spectral comparison after spectral bandpass adjustment of Sentinel-2 values to Landsat-8 shows a nearly perfect alignment between the same-day images. The spectral band adjustment succeeds in adjusting Sentinel-2 spectral values to Landsat-8 very well in Eastern Siberian Arctic-Boreal landscapes. After spectral adjustment, Landsat and Sentinel-2 data can be used to create temporally-dense time series and be applied to assess permafrost landscape changes in Eastern Siberia. Remaining differences between the sensors can be attributed to several factors including heterogeneous terrain, poor cloud and cloud shadow masking, and mixed pixels.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , NonPeerReviewed , info:eu-repo/semantics/article
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  • 48
    Publikationsdatum: 2022-05-06
    Beschreibung: In situ and remote-sensing measurements have been used to characterize the run-up phase and the phenomena that occurred during the August–November 2014 flank eruption at Stromboli. Data comprise videos recorded by the visible and infrared camera network, ground displacement recorded by the permanent-sited Ku-band, Ground-Based Interferometric Synthetic Aperture Radar (GBInSAR) device, seismic signals (band 0.02–10 Hz), and high-resolution Digital Elevation Models (DEMs) reconstructed based on Light Detection and Ranging (LiDAR) data and tri-stereo PLEIADES-1 imagery. This work highlights the importance of considering data from in situ sensors and remote-sensing platforms in monitoring active volcanoes. Comparison of data from live-cams, tremor amplitude, localization of Very-Long-Period (VLP) source and amplitude of explosion quakes, and ground displacements recorded by GBInSAR in the crater terrace provide information about the eruptive activity, nowcasting the shift in eruptive style of explosive to effusive. At the same time, the landslide activity during the run-up and onset phases could be forecasted and tracked using the integration of data from the GBInSAR and the seismic landslide index. Finally, the use of airborne and space-borne DEMs permitted the detection of topographic changes induced by the eruptive activity, allowing for the estimation of a total volume of 3.07 ± 0.37 × 106 m3 of the 2014 lava flow field emplaced on the steep Sciara del Fuoco slope.
    Beschreibung: This work has been financially supported by the “Presidenza del Consiglio dei Ministri – Dipartimento della Protezione Civile” (Presidency of the Council of Ministers – Department of Civil Protection) within the framework of the InGrID2015-2016 and SAR.NET2017 projects (Scientific Responsibility: NC); this publication, however, does not reflect the position and the official policies of the Department. FDiT has been supported by a post-doc fellowship founded by the “Università degli Studi di Firenze – Ente Cassa di Risparmio di Firenze” (D.R. n. 127804 (1206) 2015; “Volcano Sentinel” project). This work has been financially supported by "Volcano Sentinel—extension” project (Call: “Settore ricerca scientifica e innovazione tecnologica”; founded by: Ente Cassa di Risparmio di Firenze. Scientific Responsibility: FeDiT).
    Beschreibung: Published
    Beschreibung: id 2035
    Beschreibung: 5V. Processi eruttivi e post-eruttivi
    Beschreibung: JCR Journal
    Schlagwort(e): landslides ; effusive activity ; Ground-Based InSAR ; infrared live cam ; seismic monitoring ; PLEIADES ; Digital Elevation Models ; optical sensors ; Stromboli volcano ; The 2014 effusive eruption ; Remote-sensing measurements
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 49
    Publikationsdatum: 2022-06-08
    Beschreibung: We collected and analysed 58 samples of groundwater from wells in the Barcellona-Milazzo Plain, one of the most important coastal aquifers of Sicily (Italy), to determine major, minor, and trace element concentrations. In this area, geogenic and anthropogenic sources of heavy metals and other pollutants co-act, making the individuation of the main pollution sources difficult. Our work was aimed at the application of geostatistical criteria for discriminating between these pollution sources. We used probability plots for separating anomalous values from background concentrations, which were plotted on maps and related to possible sources of pollutants. Our results indicate that hydrothermal fluid circulation and the water–rock interaction of country rocks that host mineralized ore deposits generate a significant flux of heavy metals to groundwater, as well as anthropogenic sources like intense agriculture and industrial activities. In particular, NO3, F, and Ni exceed the Maximum Admitted Concentrations (MACs) established by the WHO and Italian legislation for drinking-water. The spatial distributions of geogenic and anthropogenic sources were so deeply interlocked that their separation was not easy, also employing geostatistical tools. This complex scenario makes the implementation of human health risk mitigation actions difficult, since the flow of pollutants is in many cases controlled by simple water–rock interaction processes.
    Beschreibung: Published
    Beschreibung: id 285
    Beschreibung: 6A. Geochimica per l'ambiente
    Beschreibung: JCR Journal
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 50
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © Oxford University Press, 2016. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 205 (2016): 728-743, doi:10.1093/gji/ggw044.
    Beschreibung: While elasticity is a defining characteristic of the Earth's lithosphere, it is often ignored in numerical models of long-term tectonic processes in favour of a simpler viscoplastic description. Here we assess the consequences of this assumption on a well-studied geodynamic problem: the growth of normal faults at an extensional plate boundary. We conduct 2-D numerical simulations of extension in elastoplastic and viscoplastic layers using a finite difference, particle-in-cell numerical approach. Our models simulate a range of faulted layer thicknesses and extension rates, allowing us to quantify the role of elasticity on three key observables: fault-induced topography, fault rotation, and fault life span. In agreement with earlier studies, simulations carried out in elastoplastic layers produce rate-independent lithospheric flexure accompanied by rapid fault rotation and an inverse relationship between fault life span and faulted layer thickness. By contrast, models carried out with a viscoplastic lithosphere produce results that may qualitatively resemble the elastoplastic case, but depend strongly on the product of extension rate and layer viscosity U × ηL. When this product is high, fault growth initially generates little deformation of the footwall and hanging wall blocks, resulting in unrealistic, rigid block-offset in topography across the fault. This configuration progressively transitions into a regime where topographic decay associated with flexure is fully accommodated within the numerical domain. In addition, high U × ηL favours the sequential growth of multiple short-offset faults as opposed to a large-offset detachment. We interpret these results by comparing them to an analytical model for the fault-induced flexure of a thin viscous plate. The key to understanding the viscoplastic model results lies in the rate-dependence of the flexural wavelength of a viscous plate, and the strain rate dependence of the force increase associated with footwall and hanging wall bending. This behaviour produces unrealistic deformation patterns that can hinder the geological relevance of long-term rifting models that assume a viscoplastic rheology.
    Beschreibung: This work was supported by NSF grants OCE-11-54238 (JAO, MDB), EAR-10-10432 (MDB) and OCE-11-55098 (GI), as well as a WHOI Deep Exploration Institute grant and start-up support from the University of Idaho (EM).
    Schlagwort(e): Mid-ocean ridge processes ; Continental tectonics: extensional ; Lithospheric flexure ; Mechanics, theory, and modelling
    Repository-Name: Woods Hole Open Access Server
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  • 51
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Conservation Physiology 4 (2016): cow014, doi:10.1093/conphys/cow014.
    Beschreibung: Reproduction of mysticete whales is difficult to monitor, and basic parameters, such as pregnancy rate and inter-calving interval, remain unknown for many populations. We hypothesized that baleen plates (keratinous strips that grow downward from the palate of mysticete whales) might record previous pregnancies, in the form of high-progesterone regions in the sections of baleen that grew while the whale was pregnant. To test this hypothesis, longitudinal baleen progesterone profiles from two adult female North Atlantic right whales (Eubalaena glacialis) that died as a result of ship strike were compared with dates of known pregnancies inferred from calf sightings and post-mortem data. We sampled a full-length baleen plate from each female at 4 cm intervals from base (newest baleen) to tip (oldest baleen), each interval representing ∼60 days of baleen growth, with high-progesterone areas then sampled at 2 or 1 cm intervals. Pulverized baleen powder was assayed for progesterone using enzyme immunoassay. The date of growth of each sampling location on the baleen plate was estimated based on the distance from the base of the plate and baleen growth rates derived from annual cycles of stable isotope ratios. Baleen progesterone profiles from both whales showed dramatic elevations (two orders of magnitude higher than baseline) in areas corresponding to known pregnancies. Baleen hormone analysis shows great potential for estimation of recent reproductive history, inter-calving interval and general reproductive biology in this species and, possibly, in other mysticete whales.
    Beschreibung: This work was supported by the Eppley Foundation for Research, the National Oceanographic and Atmospheric Administration Marine Mammal Health and Stranding Program and the Woods Hole Oceanographic Institution Ocean Life Institute.
    Schlagwort(e): Baleen ; Cetacea ; Marine mammals ; Pregnancy ; Progesterone ; Reproduction
    Repository-Name: Woods Hole Open Access Server
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  • 52
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Genome Biology and Evolution 7 (2015): 457-464, doi:10.1093/gbe/evu289.
    Beschreibung: The uptake and transport of vitamin B12 (cobalamin; Cbl) in mammals involves a refined system with three evolutionarily related transporters: transcobalamin 1 (Tcn1), transcobalamin 2 (Tcn2), and the gastric intrinsic factor (Gif). Teleosts have a single documented binder with intermediate features to the human counterparts. Consequently, it has been proposed that the expansion of Cbl binders occurred after the separation of Actinopterygians. Here, we demonstrate that the diversification of this gene family took place earlier in gnathostome ancestry. Our data indicates the presence of single copy orthologs of the Sarcopterygii/Tetrapoda duplicates Tcn1 and Gif, and Tcn2, in Chondrichthyes. In addition, a highly divergent Cbl binder was found in the Elasmobranchii. We unveil a complex scenario forged by genome, tandem duplications and lineage-specific gene loss. Our findings suggest that from an ancestral transporter, exhibiting large spectrum and high affinity binding, highly specific Cbl transporters emerged through gene duplication and mutations at the binding pocket.
    Beschreibung: This work was funded by the Fundação para a Ciência e a Tecnologia (FCT) project PEst-C/MAR/LA0015/2013. PhD grant SFRH/BD/84238/2012 awarded to M.L-.M. Postdoctoral grant SFRH/BPD/72519/2010 awarded to R.R.
    Schlagwort(e): Cobalamin transport ; Genome duplications ; Gnathostomes
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 53
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Author(s), 2016. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 205 (2016): 785-795, doi:10.1093/gji/ggw036.
    Beschreibung: An L-configured, three-component short period seismic array was deployed on the Ross Ice Shelf, Antarctica during November 2014. Polarization analysis of ambient noise data from these stations shows linearly polarized waves for frequency bands between 0.2 and 2 Hz. A spectral peak at about 1.6 Hz is interpreted as the resonance frequency of the water column and is used to estimate the water layer thickness below the ice shelf. The frequency band from 4 to 18 Hz is dominated by Rayleigh and Love waves propagating from the north that, based on daily temporal variations, we conclude were generated by field camp activity. Frequency–slowness plots were calculated using beamforming. Resulting Love and Rayleigh wave dispersion curves were inverted for the shear wave velocity profile within the firn and ice to ∼150 m depth. The derived density profile allows estimation of the pore close-off depth and the firn–air content thickness. Separate inversions of Rayleigh and Love wave dispersion curves give different shear wave velocity profiles within the firn. We attribute this difference to an effective anisotropy due to fine layering. The layered structure of firn, ice, water and the seafloor results in a characteristic dispersion curve below 7 Hz. Forward modelling the observed Rayleigh wave dispersion curves using representative firn, ice, water and sediment structures indicates that Rayleigh waves are observed when wavelengths are long enough to span the distance from the ice shelf surface to the seafloor. The forward modelling shows that analysis of seismic data from an ice shelf provides the possibility of resolving ice shelf thickness, water column thickness and the physical properties of the ice shelf and underlying seafloor using passive-source seismic data.
    Beschreibung: PDB, AD and PG were supported by NSF Grant PLR 1246151. RAS was supported by NSF Grant PLR-1246416. DAW, RA and AN were supported under NSF Grants PLR-1142518, 1141916 and 1142126, respectively. PDB also received support from the California Department of Parks and Recreation, Division of Boating and Waterways under contract 11-106-107.
    Schlagwort(e): Glaciology ; Surface waves and free oscillations ; Seismic anisotropy ; Antarctica
    Repository-Name: Woods Hole Open Access Server
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  • 54
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sutherland, K. R., Gemmell, B. J., Colin, S. P., & Costello, J. H. Maneuvering performance in the colonial siphonophore, Nanomia bijuga. Biomimetics, 4(3), (2019): 62, doi:10.3390/biomimetics4030062.
    Beschreibung: The colonial cnidarian, Nanomia bijuga, is highly proficient at moving in three-dimensional space through forward swimming, reverse swimming and turning. We used high speed videography, particle tracking, and particle image velocimetry (PIV) with frame rates up to 6400 s−1 to study the kinematics and fluid mechanics of N. bijuga during turning and reversing. N. bijuga achieved turns with high maneuverability (mean length–specific turning radius, R/L = 0.15 ± 0.10) and agility (mean angular velocity, ω = 104 ± 41 deg. s−1). The maximum angular velocity of N. bijuga, 215 deg. s−1, exceeded that of many vertebrates with more complex body forms and neurocircuitry. Through the combination of rapid nectophore contraction and velum modulation, N. bijuga generated high speed, narrow jets (maximum = 1063 ± 176 mm s−1; 295 nectophore lengths s−1) and thrust vectoring, which enabled high speed reverse swimming (maximum = 134 ± 28 mm s−1; 37 nectophore lengths s−1) that matched previously reported forward swimming speeds. A 1:1 ratio of forward to reverse swimming speed has not been recorded in other swimming organisms. Taken together, the colonial architecture, simple neurocircuitry, and tightly controlled pulsed jets by N. bijuga allow for a diverse repertoire of movements. Considering the further advantages of scalability and redundancy in colonies, N. bijuga is a model system for informing underwater propulsion and navigation of complex environments.
    Beschreibung: This research was funded by the National Science Foundation (NSF) 1829932 and 173764 to K.R.S., NSF 1830015, 1536672, 1511721 to J.H.C., 1455440, 1536688, 1829913 to S.P.C., NSF 1511996 to B.J.G.
    Schlagwort(e): turn ; reverse ; agility ; maneuverability ; propulsion ; Nanomia bijuga
    Repository-Name: Woods Hole Open Access Server
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  • 55
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in ICES Journal of Marine Science 76(4), (2010): 781-786, doi:10.1093/icesjms/fsy194.
    Beschreibung: Whales are federally protected by the Marine Mammal Protection Act; endangered species, such as the North Atlantic right whale, receive additional protection under the Endangered Species Act. However, their regulations have failed to satisfy conservation and animal welfare concerns. From 1990 to 2011 the North Atlantic right whale (Eubalaena glacialis, NARW) population grew at a mean of 2.8% annually. However, population trends reversed since 2011; the species is in decline, with only ∼100 reproductively active females remaining. This failure is driven by vessel collisions and increasingly fatal and serious entanglement in fixed fishing gear, whose rope strength has increased substantially. Chronic entanglement, drag, and associated morbidity have been linked to poor fecundity. Genuine solutions involve designating areas to be avoided and speed restrictions for ships and removing fishing trap ropes from the water column. A trap fishing closure for NARW habitat in the Cape Cod Bay (U.S.) area has been in place seasonally since 2015. 2017 mortalities in Eastern Canada elicited substantive management changes whereby the 2018 presence of NARW in active trap fishing areas resulted in an effective closure. To avoid these costly closures, the traditional trap fishery model of rope end lines attached to surface marker buoys has to be modified so that traps are marked virtually, and retrieved with gear that does not remain in the water column except during trap retrieval. Consumer demand for genuinely whale-safe products will augment and encourage the necessary regulatory changes so that trap fisheries conserve target and nontarget species.
    Beschreibung: I thank Mark Baumgartner, Scott Kraus, Tim Werner, Amy Knowlton, Heather Pettis, Scott Landry, Stormy Mayo, Fred Penney, and Beth Casoni for discussions on this topic and Natalie Renier for drawing Figures 5 and 6. Funding was provided by the Woods Hole Oceanographic Institution Independent Research and Development Program.
    Beschreibung: 2020-01-10
    Schlagwort(e): end line ; entanglement ; large whale ; rope removal ; trap
    Repository-Name: Woods Hole Open Access Server
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  • 56
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International, 219(1), (2019): 464-478, doi:10.1093/gji/ggz315.
    Beschreibung: The electromagnetic (EM) field generated by ocean tidal flow is readily detectable in both satellite magnetic field data, and in ocean-bottom measurements of electric and magnetic fields. The availability of accurate charts of tidal currents, constrained by assimilation of modern satellite altimetry data, opens the possibility of using tidal EM fields as a source to image mantle electrical resistivity beneath the ocean basins, as highlighted by the recent success in defining the globally averaged lithosphere–asthenosphere boundary (LAB) with satellite data. In fact, seafloor EM data would be expected to provide better constraints on the structure of resistive oceanic lithosphere, since the toroidal magnetic mode, which can constrain resistive features, is a significant component of the tidal EM field within the ocean, but is absent above the surface (in particular in satellite data). Here we consider this issue in more detail, using a combination of simplified theoretical analysis and 1-D and 3-D numerical modelling to provide a thorough discussion of the sensitivity of satellite and seafloor data to subsurface electrical structure. As part of this effort, and as a step toward 3-D inversion of seafloor tidal data, we have developed a new flexible 3-D spherical-coordinate finite difference scheme for both global and regional scale modelling, with higher resolution models nested in larger scale solutions. We use the new 3-D model, together with Monte Carlo simulations of errors in tidal current estimates, to provide a quantitative assessment of errors in the computed tidal EM signal caused by uncertainty in the tidal source. Over the open ocean this component of error is below 0.01 nT in Bz at satellite height and 0.05 nT in Bx on the seafloor, well below typical signal levels. However, as coastlines are approached error levels can increase substantially. Both analytical and 3-D modelling demonstrate that the seafloor magnetic field is most sensitive to the lithospheric resistance (the product of resistivity and thickness), and is more weakly influenced (primarily in the phase) by resistivity of the underlying asthenosphere. Satellite data, which contain only the poloidal magnetic mode, are more sensitive to the conductive asthenosphere, but have little sensitivity to lithospheric resistance. For both seafloor and satellite data’s changes due to plausible variations in Earth parameters are well above error levels associated with source uncertainty, at least in the ocean interior. Although the 3-D modelling results are qualitatively consistent with theoretical analysis, the presence of coastlines and bathymetric variations generates a complex response, confirming that quantitative interpretation of ocean tidal EM fields will require a 3-D treatment. As an illustration of the nested 3-D scheme, seafloor data at five magnetic and seven electric stations in the northeastern Pacific (41○N, 165○W) are fit with trial-and-error forward modelling of a local domain. The simulation results indicate that the lithospheric resistance is roughly 7 × 108 Ωm2. The phase of the seafloor data in this region are inconsistent with a sharp transition between the resistive lithosphere and conductive asthenosphere.
    Beschreibung: This work has been supported by National Natural Science Foundation of China grants 41804072 and 41574104, and NSF grant EAR-1447109. Special thanks to Dr Benjamin Murphy who provided the conductivity-depth profile for 1-D earth model, Dr Min Ding who provided valuable discussion about the oceanic lithosphere and Dr Jeffery Love who provided comments on the stylistics of the manuscript.
    Schlagwort(e): Composition and structure of the mantle ; Pacific Ocean ; Electromagnetic theory ; Geomagnetic induction ; Satellite magnetics
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  • 57
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Aslan, C., Beckman, N. G., Rogers, H. S., Bronstein, J., Zurell, D., Hartig, F., Shea, K., Pejchar, L., Neubert, M., Poulsen, J., HilleRisLambers, J., Miriti, M., Loiselle, B., Effiom, E., Zambrano, J., Schupp, G., Pufal, G., Johnson, J., Bullock, J. M., Brodie, J., Bruna, E., Cantrell, R. S., Decker, R., Fricke, E., Gurski, K., Hastings, A., Kogan, O., Razafindratsima, O., Sandor, M., Schreiber, S., Snell, R., Strickland, C., & Zhou, Y. Employing plant functional groups to advance seed dispersal ecology and conservation. AoB Plants, 11(2), (2019):plz006, doi:10.1093/aobpla/plz006.
    Beschreibung: Seed dispersal enables plants to reach hospitable germination sites and escape natural enemies. Understanding when and how much seed dispersal matters to plant fitness is critical for understanding plant population and community dynamics. At the same time, the complexity of factors that determine if a seed will be successfully dispersed and subsequently develop into a reproductive plant is daunting. Quantifying all factors that may influence seed dispersal effectiveness for any potential seed-vector relationship would require an unrealistically large amount of time, materials and financial resources. On the other hand, being able to make dispersal predictions is critical for predicting whether single species and entire ecosystems will be resilient to global change. Building on current frameworks, we here posit that seed dispersal ecology should adopt plant functional groups as analytical units to reduce this complexity to manageable levels. Functional groups can be used to distinguish, for their constituent species, whether it matters (i) if seeds are dispersed, (ii) into what context they are dispersed and (iii) what vectors disperse them. To avoid overgeneralization, we propose that the utility of these functional groups may be assessed by generating predictions based on the groups and then testing those predictions against species-specific data. We suggest that data collection and analysis can then be guided by robust functional group definitions. Generalizing across similar species in this way could help us to better understand the population and community dynamics of plants and tackle the complexity of seed dispersal as well as its disruption.
    Beschreibung: Ideas for this manuscript initiated during the Seed Dispersal Workshop held in May 2016 at the Socio-Environmental Synthesis Center in Annapolis, MD and supported by the US National Science Foundation Grant DEB-1548194 to N.G.B. and the National Socio‐Environmental Synthesis Center under the US National Science Foundation Grant DBI‐1052875. D.Z. received funding from the Swiss National Science Foundation (SNF, grant: PZ00P3_168136/1) and from the German Science Foundation (DFG, grant: ZU 361/1- 1). Contributions by the authors C.A. led the development of the concepts, writing, and revising of the manuscript with input from N.G.B. and H.S.R. All authors contributed to the development of concepts and are listed in order of contribution and alphabetical order within each level of contribution.
    Schlagwort(e): dependency ; directed dispersal ; dispersal vectors ; generalization ; mutualism ; seed dispersal effectiveness
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  • 58
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Alexander, H., Johnson, L. K., & Brown, C. T.. Keeping it light: (re)analyzing community-wide datasets without major infrastructure. Gigascience, 8(2),(2019): giy159, doi:10.1093/gigascience/giy159.
    Beschreibung: DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups.
    Beschreibung: Funding was provided by the Gordon and Betty Moore Foundation (award GBMF4551 to C.T.B.).
    Schlagwort(e): reproducibility ; data reuse ; open data
    Repository-Name: Woods Hole Open Access Server
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  • 59
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Foglini, F., Grande, V., Marchese, F., Bracchi, V. A., Prampolini, M., Angeletti, L., Castellan, G., Chimienti, G., Hansen, I. M., Gudmundsen, M., Meroni, A. N., Vertino, A., Badalamenti, F., Corselli, C., Erdal, I., Martorelli, E., Savini, A., & Taviani, M. (2019). Application of hyperspectral imaging to underwater habitat mapping, Southern Adriatic Sea. Sensors, 19(10), (2019): 2261, doi:10.3390/s19102261.
    Beschreibung: Hyperspectral imagers enable the collection of high-resolution spectral images exploitable for the supervised classification of habitats and objects of interest (OOI). Although this is a well-established technology for the study of subaerial environments, Ecotone AS has developed an underwater hyperspectral imager (UHI) system to explore the properties of the seafloor. The aim of the project is to evaluate the potential of this instrument for mapping and monitoring benthic habitats in shallow and deep-water environments. For the first time, we tested this system at two sites in the Southern Adriatic Sea (Mediterranean Sea): the cold-water coral (CWC) habitat in the Bari Canyon and the Coralligenous habitat off Brindisi. We created a spectral library for each site, considering the different substrates and the main OOI reaching, where possible, the lower taxonomic rank. We applied the spectral angle mapper (SAM) supervised classification to map the areal extent of the Coralligenous and to recognize the major CWC habitat-formers. Despite some technical problems, the first results demonstrate the suitability of the UHI camera for habitat mapping and seabed monitoring, through the achievement of quantifiable and repeatable classifications.
    Beschreibung: Flagship Project RITMARE (La Ricerca Italiana per il Mare) and EVER-EST projects (ID: 674907).
    Schlagwort(e): hyperspectral camera ; spectral library ; habitat mapping ; coralligenous ; cold-water coral ; Adriatic Sea
    Repository-Name: Woods Hole Open Access Server
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  • 60
    Publikationsdatum: 2022-05-26
    Beschreibung: © International Council for the Exploration of the Sea, 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ICES Journal of Marine Science 73 (2016): 1839-1850, doi: 10.1093/icesjms/fsw086.
    Beschreibung: For terrestrial and marine benthic ecologists, landscape ecology provides a framework to address issues of complexity, patchiness, and scale—providing theory and context for ecosystem based management in a changing climate. Marine pelagic ecosystems are likewise changing in response to warming, changing chemistry, and resource exploitation. However, unlike spatial landscapes that migrate slowly with time, pelagic seascapes are embedded in a turbulent, advective ocean. Adaptations from landscape ecology to marine pelagic ecosystem management must consider the nature and scale of biophysical interactions associated with organisms ranging from microbes to whales, a hierarchical organization shaped by physical processes, and our limited capacity to observe and monitor these phenomena across global oceans. High frequency, multiscale, and synoptic characterization of the 4-D variability of seascapes are now available through improved classification methods, a maturing array of satellite remote sensing products, advances in autonomous sampling of multiple levels of biological complexity, and emergence of observational networks. Merging of oceanographic and ecological paradigms will be necessary to observe, manage, and conserve species embedded in a dynamic seascape mosaic, where the boundaries, extent, and location of features change with time.
    Beschreibung: This work was supported by NASA grant NNX14AP62A “National Marine Sanctuaries as Sentinel Sites for a Demonstration Marine Biodiversity Observation Network (MBON)” funded under the National Ocean Partnership Program (NOPP RFP NOAA-NOS-IOOS-2014-2003803 in partnership between NOAA, BOEM, and NASA), the NOAA Integrated Ocean Observing System (IOOS) Program Office, and the LenFest Ocean Program.
    Schlagwort(e): Biodiversity ; Conservation ; Landscape ; Ocean observations ; Pelagic ; Phytoplankton ; Seascape
    Repository-Name: Woods Hole Open Access Server
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  • 61
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    Unbekannt
    Oxford University Press
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 2165-2178, doi: 10.1093/gji/ggz280.
    Beschreibung: A multitaper estimator is proposed that accommodates time-series containing gaps without using any form of interpolation. In contrast with prior missing-data multitaper estimators that force standard Slepian sequences to be zero at gaps, the proposed missing-data Slepian sequences are defined only where data are present. The missing-data Slepian sequences are frequency independent, as are the eigenvalues that define the energy concentration within the resolution bandwidth, when the process bandwidth is [−1/2,1/2) for unit sampling and the sampling scheme comprises integer multiples of unity. As a consequence, one need only compute the ensuing missing-data Slepian sequences for a given sampling scheme once, and then the spectrum at an arbitrary set of frequencies can be computed using them. It is also shown that the resulting missing-data multitaper estimator can incorporate all of the optimality features (i.e. adaptive-weighting, F-test and reshaping) of the standard multitaper estimator, and can be applied to bivariate or multivariate situations in similar ways. Performance of the missing-data multitaper estimator is illustrated using length of day, seafloor pressure and Nile River low stand time-series.
    Beschreibung: The length of day utilized in Section 3 are available from http://hpiers.obspm.fr. The pressure data used in Section 4 are available from https://doi.org/10.1029/2018JC014586. A Matlab function MDmwps.m to compute missing-data power spectra is available from the Mathworks file exchange website. The author thanks Jeff Park and editor F.J. Simons for thorough reviews. This work was supported by an Internal Research and Development award at WHOI, and by the Walter A. and Hope Noyes Smith Chair for Excellence in Oceanography.
    Schlagwort(e): Fourier analysis ; Numerical approximations and analysis ; Statistical methods ; Time-series analysis
    Repository-Name: Woods Hole Open Access Server
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  • 62
    Publikationsdatum: 2022-05-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, L. K., Alexander, H., & Brown, C. T. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes. Gigascience, 8(4), (2019): giy158, doi: 10.1093/gigascience/giy158.
    Beschreibung: Background: De novo transcriptome assemblies are required prior to analyzing RNA sequencing data from a species without an existing reference genome or transcriptome. Despite the prevalence of transcriptomic studies, the effects of using different workflows, or “pipelines,” on the resulting assemblies are poorly understood. Here, a pipeline was programmatically automated and used to assemble and annotate raw transcriptomic short-read data collected as part of the Marine Microbial Eukaryotic Transcriptome Sequencing Project. The resulting transcriptome assemblies were evaluated and compared against assemblies that were previously generated with a different pipeline developed by the National Center for Genome Research. Results: New transcriptome assemblies contained the majority of previous contigs as well as new content. On average, 7.8% of the annotated contigs in the new assemblies were novel gene names not found in the previous assemblies. Taxonomic trends were observed in the assembly metrics. Assemblies from the Dinoflagellata showed a higher number of contigs and unique k-mers than transcriptomes from other phyla, while assemblies from Ciliophora had a lower percentage of open reading frames compared to other phyla. Conclusions: Given current bioinformatics approaches, there is no single “best” reference transcriptome for a particular set of raw data. As the optimum transcriptome is a moving target, improving (or not) with new tools and approaches, automated and programmable pipelines are invaluable for managing the computationally intensive tasks required for re-processing large sets of samples with revised pipelines and ensuring a common evaluation workflow is applied to all samples. Thus, re-assembling existing data with new tools using automated and programmable pipelines may yield more accurate identification of taxon-specific trends across samples in addition to novel and useful products for the community.
    Beschreibung: Funding was provided by the Gordon and Betty Moore Foundation under award number GBMF4551 to C.T.B. Jetstream cloud platform was used with XSEDE allocation TG-BIO160028 [66, 67].
    Schlagwort(e): marine microbial eukaryote ; transcriptome assembly ; automated pipeline ; re-analysis
    Repository-Name: Woods Hole Open Access Server
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  • 63
    Publikationsdatum: 2023-06-21
    Beschreibung: The sea-ice climatology and sea-ice trends and variability are evaluated in simulations with the new version of the coupled Arctic atmosphere-ocean-sea ice model HIRHAM–NAOSIM 2.0. This version utilizes upgraded model components for the coupled subsystems, which include physical and numerical improvements and higher horizontal and vertical resolution, and a revised coupling procedure with the aid of the coupling software YAC (Yet Another Coupler). The model performance is evaluated against observationally based data sets and compared with the previous version. Ensemble simulations for the period 1979–2016 reveal that Arctic sea ice is thicker in all seasons and closer to observations than in the previous version. Wintertime biases in sea-ice extent, upper ocean temperatures, and near-surface air temperatures are reduced, while summertime biases are of similar magnitude as in the previous version. Problematic issues of the current model configuration and potential corrective measures and further developments are discussed.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , isiRev
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  • 64
    Publikationsdatum: 2023-03-31
    Beschreibung: Coeval changes in atmospheric CO2 and 14C contents during the last deglaciation are often attributed to ocean circulation changes that released carbon stored in the deep ocean during the Last Glacial Maximum (LGM). Work is being done to generate records that allow for the identification of the exact mechanisms leading to the accumulation and release of carbon from the oceanic reservoir, but these mechanisms are still the subject of debate. Here we present foraminifera 14C data from five cores in a transect across the Chilean continental margin between ~540 and ~3,100 m depth spanning the last 20,000 years. Our data reveal that during the LGM, waters at ~2,000 m were 50% to 80% more depleted in Δ14C than waters at ~1,500 m when compared to modern values, consistent with the hypothesis of a glacial deep ocean carbon reservoir that was isolated from the atmosphere. During the deglaciation, our intermediate water records reveal homogenization in the Δ14C values between ~800 and ~1,500 m from ~16.5–14.5 ka cal BP to ~14–12 ka cal BP, which we interpret as deeper penetration of Antarctic Intermediate Water. While many questions still remain, this process could aid the ventilation of the deep ocean at the beginning of the deglaciation, contributing to the observed ~40 ppm rise in atmospheric pCO2.
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , peerRev
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  • 65
    Publikationsdatum: 2022-10-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Pun, I., Chan, J. C. L., Lin, I., Chan, K. T. E., Price, J. F., Ko, D. S., Lien, C., Wu, Y., & Huang, H. Rapid intensification of Typhoon Hato (2017) over shallow water. Sustainability, 11(13), (2019): 3709, doi:10.3390/su11133709.
    Beschreibung: On 23 August, 2017, Typhoon Hato rapidly intensified by 10 kt within 3 h just prior to landfall in the city of Macau along the South China coast. Hato’s surface winds in excess of 50 m s−1 devastated the city, causing unprecedented damage and social impact. This study reveals that anomalously warm ocean conditions in the nearshore shallow water (depth 〈 30 m) likely played a key role in Hato’s fast intensification. In particular, cooling of the sea surface temperature (SST) generated by Hato at the critical landfall point was estimated to be only 0.1–0.5 °C. The results from both a simple ocean mixing scheme and full dynamical ocean model indicate that SST cooling was minimized in the shallow coastal waters due to a lack of cool water at depth. Given the nearly invariant SST in the coastal waters, we estimate a large amount of heat flux, i.e., 1.9k W m−2, during the landfall period. Experiments indicate that in the absence of shallow bathymetry, and thus, if nominal cool water had been available for vertical mixing, the SST cooling would have been enhanced from 0.1 °C to 1.4 °C, and sea to air heat flux reduced by about a quarter. Numerical simulations with an atmospheric model suggest that the intensity of Hato was very sensitive to air-sea heat flux in the coastal region, indicating the critical importance of coastal ocean hydrography.
    Beschreibung: The work of I.-F.P. is supported by Taiwan’s Ministry of Science and Technology Grant MOST 107-2111-M-008-001-MY3. The work of J.C.L.C. is supported by the Research Grants Council of Hong Kong Grant E-CityU101/16. The work of I.-I.L. is supported by Taiwan’s Ministry of Science and Technology (MOST 106-2111-M-002-011-MY3, MOST 108-2111-M-002-014-MY2). The work of K.T.F.C. is jointly supported by the National Natural Science Foundation of China (41775097), and the National Natural Science Foundation of China and Macau Science and Technology Development Joint Fund (NSFC-FDCT), China and Macau (41861164027).
    Schlagwort(e): Typhoon ; SST cooling ; Shallow water ; Vertical mixing ; Rapid intensification
    Repository-Name: Woods Hole Open Access Server
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  • 66
    facet.materialart.
    Unbekannt
    American Geophysical Union (AGU)
    In:  EPIC3Journal of Geophysical Research: Oceans, American Geophysical Union (AGU), 124(8), pp. 5503-5528, ISSN: 2169-9275
    Publikationsdatum: 2022-11-02
    Repository-Name: EPIC Alfred Wegener Institut
    Materialart: Article , NonPeerReviewed
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  • 67
    Publikationsdatum: 2022-10-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gurumurthy, P., Orton, P. M., Talke, S. A., Georgas, N., & Booth, J. F. Mechanics and historical evolution of sea level blowouts in New York harbor. Journal of Marine Science and Engineering, 7(5), (2019): 160, doi:10.3390/jmse7050160.
    Beschreibung: Wind-induced sea level blowouts, measured as negative storm surge or extreme low water (ELW), produce public safety hazards and impose economic costs (e.g., to shipping). In this paper, we use a regional hydrodynamic numerical model to test the effect of historical environmental change and the time scale, direction, and magnitude of wind forcing on negative and positive surge events in the New York Harbor (NYH). Environmental sensitivity experiments show that dredging of shipping channels is an important factor affecting blowouts while changing ice cover and removal of other roughness elements are unimportant in NYH. Continuously measured water level records since 1860 show a trend towards smaller negative surge magnitudes (measured minus predicted water level) but do not show a significant change to ELW magnitudes after removing the sea-level trend. Model results suggest that the smaller negative surges occur in the deeper, dredged modern system due to a reduced tide-surge interaction, primarily through a reduced phase shift in the predicted tide. The sensitivity of surge to wind direction changes spatially with remote wind effects dominating local wind effects near NYH. Convergent coastlines that amplify positive surges also amplify negative surges, a process we term inverse coastal funneling.
    Beschreibung: This research was funded by the US Army Corps of Engineers (agreement no. W9127N-14-2-0015; S. Talke, PI), the NSF (Career Award 1455350; PI Talke), NASA’s Research Opportunities in Space and Earth Science ROSES-2012 (grant NNX14AD48G; Kushnir, PI), and a Provost’s Doctoral Fellowship, Stevens Institute of Technology.
    Schlagwort(e): Estuary ; Negative surge ; Blowout ; Storm surge ; Funneling ; Tide-surge interaction ; Wind set-down ; New York Harbor ; Dredging
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 68
    Publikationsdatum: 2022-10-26
    Beschreibung: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Al Senafi, F., Anis, A., & Menezes, V. Surface heat fluxes over the northern Arabian Gulf and the northern Red Sea: Evaluation of ECMWF-ERA5 and NASA-MERRA2 reanalyses. Atmosphere, 10(9), (2019): 504, doi:10.3390/atmos10090504.
    Beschreibung: The air–sea heat fluxes in marginal seas and under extreme weather conditions constitute an essential source for energy transport and mixing dynamics. To reproduce these effects in numerical models, we need a better understanding of these fluxes. In response to this demand, we undertook a study to examine the surface heat fluxes in the Arabian Gulf (2013 to 2014) and Red Sea (2008 to 2010)—the two salty Indian Ocean marginal seas. We use high-quality buoy observations from offshore meteorological stations and data from two reanalysis products, the Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA2) from the National Aeronautics and Space Administration (NASA) and ERA5, the fifth generation of the European Centre for Medium-Range Weather Forecasts (ECMWF) atmospheric reanalyses of global climate. Comparison of the reanalyses with the in situ-derived fluxes shows that both products underestimate the net heat fluxes in the Gulf and the Red Sea, with biases up to −45 W/m 2 in MERRA2. The reanalyses reproduce relatively well the seasonal variability in the two regions and the effects of wind events on air–sea fluxes. The results suggest that when forcing numerical models, ERA5 might provide a preferable dataset of surface heat fluxes for the Arabian Gulf while for the Red Sea the MERRA2 seems preferable.
    Beschreibung: This study was funded by the Research Sector at Kuwait University (project #ZS03/16) and by NSF (grant #OCE-1435665) supporting V.M.
    Schlagwort(e): Arabian Gulf ; Red Sea ; Persian Gulf ; Merra 2 ; ERA 5 ; Heat fluxes
    Repository-Name: Woods Hole Open Access Server
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  • 69
    Publikationsdatum: 2023-06-21
    Beschreibung: Histone methylation patterns are important epigenetic regulators of mammalian development, notably through stem cell identity maintenance by chromatin remodeling and transcriptional control of pluripotency genes. But, the implications of histone marks are poorly understood in distant groups outside vertebrates and ecdysozoan models. However, the development of the Pacific oyster Crassostrea gigas is under the strong epigenetic influence of DNA methylation, and Jumonji histone-demethylase orthologues are highly expressed during C. gigas early life. This suggests a physiological relevance of histone methylation regulation in oyster development, raising the question of functional conservation of this epigenetic pathway in lophotrochozoan. Quantification of histone methylation using fluorescent ELISAs during oyster early life indicated significant variations in monomethyl histone H3 lysine 4 (H3K4me), an overall decrease in H3K9 mono- and tri-methylations, and in H3K36 methylations, respectively, whereas no significant modification could be detected in H3K27 methylation. Early in vivo treatment with the JmjC-specific inhibitor Methylstat induced hypermethylation of all the examined histone H3 lysines and developmental alterations as revealed by scanning electronic microscopy. Using microarrays, we identified 376 genes that were differentially expressed under methylstat treatment, which expression patterns could discriminate between samples as indicated by principal component analysis. Furthermore, Gene Ontology revealed that these genes were related to processes potentially important for embryonic stages such as binding, cell differentiation and development. These results suggest an important physiological significance of histone methylation in the oyster embryonic and larval life, providing, to our knowledge, the first insights into epigenetic regulation by histone methylation in lophotrochozoan development.
    Repository-Name: EPIC Alfred Wegener Institut
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  • 70
    Publikationsdatum: 2024-04-05
    Beschreibung: Secondary microseismic noise is generated by non-linear interactions between ocean waves at the ocean surface. We present here the theory for computing the site effect of the ocean layer upon body waves generated by noise sources distributed along the ocean surface. By defining the wavefield as the superposition of plane waves, we show that the ocean site effect can be described as the constructive interference of multiply reflected P waves in the ocean that are then converted to either P or SV waves at the ocean–crust interface. We observe that the site effect varies strongly with period and ocean depth, although in a different way for body waves than for Rayleigh waves. We also show that the ocean site effect is stronger for P waves than for S waves. We validate our computation by comparing the theoretical noise body wave sources with the sources inferred from beamforming analysis of the three seismogram components recorded by the Southern California Seismic Network. We use rotated traces for the beamforming analysis, and we show that we clearly detect P waves generated by ocean gravity wave interactions along the track of typhoon Ioke (2006 September). We do not detect the corresponding SV waves, and we demonstrate that this is because their amplitude is too weak.
    Beschreibung: Published
    Beschreibung: 1096-1106
    Beschreibung: 1T. Geodinamica e interno della Terra
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): Body waves ; Site effects ; Theoretical Seismology ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 71
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2015-08-08
    Beschreibung: ‘Basic research’ is based on epistemological and intentional criteria. In terms of science policy, however, these criteria imply contradictory views on investment in ‘basic research’. The former espouses the linear model of innovation and encourages policy-makers concerned with economic problems to expand investment on basic research. However, the latter can collide with the policy norm of policy-makers and discourage investment in ‘basic research’ in an institutional setting where the nation-state prevails over scientists, as in South Korea. Emphasizing policy ideas and policy learning, this paper empirically shows that changes in investment priority and the emergence of new concepts about ‘basic research’ are co-products of a policy paradigm of the linear model and a policy norm of industrial competitiveness in Korea. Specifically, emphasis was placed on the balance between pure and oriented basic research, but moved on to ‘oriented basic research’, ‘basic engineering’, and to ‘basic research’ coupled with ‘woncheon-technology’.
    Print ISSN: 0302-3427
    Digitale ISSN: 1471-5430
    Thema: Wissenschaftskunde und Wissenschaftsorganisation, Hochschul- und Universitätswesen, Museumswissenschaft
    Publiziert von Oxford University Press
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  • 72
    Publikationsdatum: 2015-08-08
    Beschreibung: Contending that collaboration management practices and interpersonal relationships are the main factors in successful collaboration in R&D, scholars have turned their attention to the relationships between collaborators. Internal factors in research collaboration activities are not yet understood at the team level. They are the so-called black box of collaboration study. The purpose of this paper is to empirically demonstrate how factors relating to team characteristics, motivation, and processes influence research impact. The study works from a multi-theoretical perspective, extending from behavioral science to general management study, and seeks to answer the question: How should we organize and manage a collaborative team to improve its research impact? The empirical results show that, along with previously identified qualitative and quantitative factors, input factors such as: project motivation, transformational leadership, frequent face-to-face communication, more outsourcing, more attentional resource, and more evenly distributed workload improve research impact.
    Print ISSN: 0302-3427
    Digitale ISSN: 1471-5430
    Thema: Wissenschaftskunde und Wissenschaftsorganisation, Hochschul- und Universitätswesen, Museumswissenschaft
    Publiziert von Oxford University Press
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  • 73
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2015-08-11
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 74
    Publikationsdatum: 2015-08-11
    Beschreibung: Parents influence their children's eating behavior by providing access to certain types of food, creating enjoyable mealtimes and associations with food, and by role modeling. In this study we investigate the association between parental employment and parental time spent eating with their children. Using data from the 2001/02 German Time Budget Survey, we explore associations between time spent eating with children and labor force participation in Germany. We find that parental labor force participation is negatively associated with time spent eating with children. Each additional hour of work per day by the mother is associated with a 2.4 minute decrease in the amount of time the mother spends eating with her children. For paternal hours of work, we find that the more time a father spends working, the less time the child spends eating with the father or with both parents. Overall, we find evidence of mother inter-gender time substitution and some amount of time/food away from home substitution. Understanding how parents allocate their time, where they are most likely to eat, and what drives these decisions is an important endeavor since parents play a critical role in shaping and reinforcing their children's eating practices.
    Schlagwort(e): D13 - Household Production and Intrahousehold Allocation
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 75
    Publikationsdatum: 2015-08-11
    Beschreibung: While many governments subsidize extension programs, financial incentives for participation in extension programs are rare and little is known about such initiatives. This article assesses whether a financial incentive for an agricultural extension program for dairy farmers in Ireland has an impact on the type of farmer that participates in extension services. The findings reveal that financial incentives encourage participation, especially with cohorts of farmers that previously eschewed such programs. Several aspects of the overall economic effectiveness of the extension program are discussed and policy recommendations are outlined.
    Schlagwort(e): Q12 - Micro Analysis of Farm Firms, Farm Households, and Farm Input Markets, Q16 - R&D ; Agricultural Technology ; Agricultural Extension Services
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 76
    Publikationsdatum: 2015-08-11
    Beschreibung: Using a mathematical programming model of Norwegian agriculture, we explore interconnections between trade liberalization and reductions in greenhouse gas (GHG) emissions. We show that the Doha Round proposals for a new agreement on agriculture through the World Trade Organization would not generate significant reductions in emissions. Further trade liberalization would reduce emissions by cutting agricultural production but would not change production methods. Imposing a carbon tax would lead both to a reduction in output and the extensification of production. In contrast, if farmers are allowed to claim a credit for carbon sequestration the effect is to intensify agricultural production.
    Schlagwort(e): F18 - Trade and Environment, Q17 - Agriculture in International Trade, Q54 - Climate ; Natural Disasters ; Global Warming
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 77
    Publikationsdatum: 2015-08-11
    Beschreibung: The Special Supplemental Nutrition Program for Women, Infants and Children (WIC) Program is a key part of America's safety net, but its structure fails to incentivize participants to be cost-conscious in their purchases and may cause retailers to attach excessive markups to WIC products. We investigate cost containment in the WIC Program, with a focus on California. Results show that smaller vendors often charge considerably higher prices for WIC foods than their larger counterparts. However, larger vendors do not mark up WIC foods more or promote them less than comparable control products. Cost containment can be improved by targeting WIC Program sales to larger vendors when it is possible to do so without compromising participant access, and using large-vendor prices as a benchmark to limit prices set by smaller vendors.
    Schlagwort(e): D12 - Consumer Economics: Empirical Analysis, I38 - Government Policy ; Provision and Effects of Welfare Programs, Q18 - Agricultural Policy ; Food Policy
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 78
    Publikationsdatum: 2015-08-11
    Beschreibung: Policy makers in the United States often justify agricultural subsidies by stressing that agriculture is the engine of the rural economy. We use the increase in crop prices in the late 2000s to estimate the marginal effect of increased agricultural revenues on local economies in the U.S. Heartland. We find that $1 more in crop revenue generated 64¢ in personal income, with most going to farm proprietors and workers (59%) or nonfarmers who own farm assets (36%). The evidence suggests a weak link between revenues and nonfarm income or employment, or on population. Cuts to agricultural subsidies are therefore likely to have little effect on the broader rural economy in regions like the Heartland.
    Schlagwort(e): J43 - Agricultural Labor Markets, O13 - Agriculture ; Natural Resources ; Energy ; Environment ; Other Primary Products
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 79
    Publikationsdatum: 2015-08-11
    Beschreibung: Farmers throughout the developing world face multiple sources of uninsured risk to agricultural production and household assets. In this paper, we present results from an experimental demand-elicitation exercise in rural Bangladesh to shed light on smallholder farmers' interest in formal insurance products. We propose a suite of insurance and savings products, and we randomly vary the price of one insurance option (area-yield insurance) and the presence of one of the savings options (group savings). Consistent with economic theory, farmers buy more of the insurance products that cover the risks they primarily face. However, because farmers are subject to a variety of risks, they do not focus on only one type of insurance; instead, they evenly split their endowment between life and disability insurance and agricultural insurance. Demand for area-yield insurance falls with price; we also observe important cross-price elasticities with other insurance products. The presence of group savings does not alter demand for insurance, though group savings is found to be a particularly popular risk management tool, especially when decisions are made in groups.
    Schlagwort(e): C93 - Field Experiments, G22 - Insurance ; Insurance Companies, O13 - Agriculture ; Natural Resources ; Energy ; Environment ; Other Primary Products, O16 - Economic Development: Financial Markets ; Saving and Capital Investment ; Corporate Finance and, Q14 - Agricultural Finance
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 80
    Publikationsdatum: 2015-08-11
    Beschreibung: In the present work, the performance of carbon nanotubes (c-CNTs) functionalized polydimethylsiloxane (PDMS) based coatings as extractive phases for in-tube solid phase microextraction (IT-SPME) coupled to Capillary LC (CapLC) has been evaluated. Carboxylic-single walled carbon nanotubes (c-SWNTs) and carboxylic-multi walled carbon nanotubes (c-MWNTs) have been immobilized on the activated surface of PDMS capillary columns. The effect of different percentages of diphenyl groups in the PDMS extractive phase has also been evaluated. The extraction capability of the capillary columns has been tested for different organic pollutants, nitrogen heterocyclic compounds and polycyclic aromatic compounds (PAHs). The results indicated that the use of the c-CNTs-PDMS capillary columns improve pyriproxyfen and mainly PAH extraction. Triazines were better extracted by unmodified TRB-35 and modified c-CNTs-PDMSTRB-5. The results showed that the extraction capability of the c-CNT capillary columns depends not only on the polarity of the analytes (as it occurs with PDMS columns) but also on the interactions that the analytes can establish with the immobilized c-CNTs on the PDMS columns. The extraction efficiency has been evaluated on the basis of the preconcentration rate that can be achieved, and, in this sense, the best c-CNTs-PDMS capillary column for each group of compounds can be proposed.
    Digitale ISSN: 2227-9075
    Thema: Chemie und Pharmazie
    Publiziert von MDPI
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  • 81
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2015-08-11
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 82
    Publikationsdatum: 2015-08-11
    Beschreibung: The monthly cycle of daily food intake among adult participants in the Supplemental Nutrition Assistance Program is examined using data from the 2007–10 National Health and Nutrition Examination Survey. Exogenous variation in interview and benefit receipt dates provides means for identification, and a difference-in-differences specification is used to account for the large boost in benefits that began in April 2009 via the American Recovery and Reinvestment Act (ARRA). Caloric intake declined as much as 25% at the end of the month prior to ARRA, but not after implementation. Few differences were observed for diet quality measures or among subgroups. Increases in SNAP benefit amounts may help smooth food intake over the benefit month.
    Schlagwort(e): D12 - Consumer Economics: Empirical Analysis, E21 - Consumption ; Saving ; Wealth, I38 - Government Policy ; Provision and Effects of Welfare Programs
    Print ISSN: 2040-5790
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    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 83
    Publikationsdatum: 2015-08-11
    Beschreibung: Many applied economics journals ban the use of deception in experiments, which contrasts with the policies in other academic disciplines. We examine the cases for and against deception, and describe the ways deception can be employed in applied economics experiments. We create a general ranking of harms from deception in experiments and present evidence from a survey (conducted in summer 2014) of agricultural and applied economists eliciting attitudes towards ten different deceptive practices. Survey respondents view inflicting physical or psychological harm on participants and not making promised payments as the most severe forms of deception. Less severe forms of deception include providing participants with incomplete product information and conducting an experiment using participants who are not aware they are part of an experiment. Finally, we provide recommendations for policies addressing deception in experiments.
    Schlagwort(e): C80 - General, C81 - Methodology for Collecting, Estimating, and Organizing Microeconomic Data, C90 - General
    Print ISSN: 2040-5790
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    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 84
    Publikationsdatum: 2015-08-11
    Beschreibung: Existing economic analysis of corn stover as an energy feedstock has not considered potential changes in land use associated with different stover prices. We estimate the response of corn stover supply density to its price driven by changes in land use and examine its implications for a processing plant's pricing strategy and marginal cost, as well as associated changes in soil erosion. We find that plants will exploit the intensive margin as well as the extensive margin to secure additional amounts of stover. Our results show, counterintuitively, that a market for stover may result in lower soil erosion due to reallocations of land to continuous corn with removal, which, combined with no-till farming, results in lower soil erosion than the baseline without stover removal. Also contrary to expectations, using cover crops with stover removal may result in higher soil erosion due to land use changes within the fuel shed associated with optimal pricing.
    Schlagwort(e): Q15 - Land Ownership and Tenure ; Land Reform ; Land Use ; Irrigation, Q24 - Land, Q42 - Alternative Energy Sources
    Print ISSN: 2040-5790
    Digitale ISSN: 2040-5804
    Thema: Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft , Wirtschaftswissenschaften
    Publiziert von Oxford University Press
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  • 85
    Publikationsdatum: 2015-08-08
    Beschreibung: : As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA’s improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants. Availability and implementation : AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov . Contact : Hue.Vuong@fnlcr.nih.gov Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Digitale ISSN: 1460-2059
    Thema: Biologie , Informatik , Medizin
    Publiziert von Oxford University Press
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  • 86
    Publikationsdatum: 2015-08-08
    Beschreibung: : As new methods for multivariate analysis of genome wide association studies become available, it is important to be able to combine results from different cohorts in a meta-analysis. The R package MultiMeta provides an implementation of the inverse-variance-based method for meta-analysis, generalized to an n -dimensional setting. Availability and implementation: The R package MultiMeta can be downloaded from CRAN. Contact: dragana.vuckovic@burlo.trieste.it ; vi1@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
    Print ISSN: 1367-4803
    Digitale ISSN: 1460-2059
    Thema: Biologie , Informatik , Medizin
    Publiziert von Oxford University Press
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  • 87
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2015-08-09
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 88
    facet.materialart.
    Unbekannt
    Oxford University Press
    Publikationsdatum: 2015-08-09
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 89
    Publikationsdatum: 2015-08-09
    Beschreibung: Fluorescence microscopy allows us to observe fluorescently labeled molecules in diverse biological processes and organelle structures within living cells. However, the diffraction limit restricts its spatial resolution to about half of its wavelength, limiting the capability of biological observation at the molecular level. Structured-illumination microscopy (SIM), a type of super-resolution microscopy, doubles the spatial resolution in all three dimensions by illuminating the sample with a patterned excitation light, followed by computer reconstruction. SIM uses a relatively low illumination power compared with other methods of super-resolution microscopy and is easily available for multicolor imaging. SIM has great potential for meeting the requirements of live-cell imaging. Recent developments in diverse types of SIM have achieved higher spatial (~50 nm lateral) and temporal (~100 Hz) resolutions. Here, we review recent advancements in SIM and discuss its application in noninvasive live-cell imaging.
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 90
    Publikationsdatum: 2015-08-09
    Beschreibung: One of the most popular super-resolution microscopies that breaks the diffraction barrier is stimulated emission depletion (STED) microscopy. As the optical set-up of STED microscopy is based on a laser scanning microscopy (LSM) system, it potentially has several merits of LSM like confocal or two-photon excitation LSM. In this article, we first describe the principles of STED microscopy and then describe the features of our newly developed two-photon excitation STED microscopy. On the basis of our recent results and those of other researchers, we conclude by discussing future research and new technologies in this field.
    Print ISSN: 0022-0744
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 91
    Publikationsdatum: 2015-08-09
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 92
    Publikationsdatum: 2015-08-09
    Beschreibung: The electrically automated ultrathin sectioning apparatus, which has been developed in recent years, can produce consecutive ultrathin sections with a diamond knife and a gallium ion beam. These newly developed apparatuses, however, have several shortcomings, such as the limited block cutting area, thermal damage to the sample by the focused ion beam and a sample electronic charge. To overcome these faults and for easier scanning electron microscopy three-dimensional fine structural reconstruction, we have developed a new cutting method using a deep ultraviolet laser, which we have named the ‘LANTome (Light Ablation Nanotome)’. Using this method, we confirmed the widening of sectioning areas, shortening of the sectioning time, automatic smoothing of rough surfaces, no sample electronic charge and minimal heat effects on the sample tissue, such as thermal denaturation.
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 93
    Publikationsdatum: 2015-08-09
    Beschreibung: Recent advances in nanoscopy, which breaks the diffraction barrier and can visualize structures smaller than the diffraction limit in cells, have encouraged biologists to investigate cellular processes at molecular resolution. Since nanoscopy depends not only on special optics but also on ‘smart’ photophysical properties of photocontrollable fluorescent probes, including photoactivatability, photoswitchability and repeated blinking, it is important for biologists to understand the advantages and disadvantages of fluorescent probes and to choose appropriate ones for their specific requirements. Here, we summarize the characteristics of currently available fluorescent probes based on both proteins and synthetic compounds applicable to nanoscopy and provide a guideline for selecting optimal probes for specific applications.
    Print ISSN: 0022-0744
    Digitale ISSN: 1477-9986
    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 94
    Publikationsdatum: 2015-08-09
    Beschreibung: As one of the most powerful tools in the biological investigation of cellular structures and dynamic processes, fluorescence microscopy has undergone extraordinary developments in the past decades. The advent of super-resolution techniques has enabled fluorescence microscopy – or rather nanoscopy – to achieve nanoscale resolution in living specimens and unravelled the interior of cells with unprecedented detail. The methods employed in this expanding field of microscopy, however, are especially prone to the detrimental effects of optical aberrations. In this review, we discuss how super-resolution microscopy techniques based upon single-molecule switching, stimulated emission depletion and structured illumination each suffer from aberrations in different ways that are dependent upon intrinsic technical aspects. We discuss the use of adaptive optics as an effective means to overcome this problem.
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    Thema: Elektrotechnik, Elektronik, Nachrichtentechnik , Allgemeine Naturwissenschaft , Physik
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  • 95
    Publikationsdatum: 2015-08-12
    Beschreibung: We performed a detailed analysis of elemental abundances, dust features, and polycyclic aromatic hydrocarbons (PAHs) in the C-rich planetary nebula (PN) Wray16-423 in the Sagittarius dwarf spheroidal galaxy, based on a unique data set taken from the Subaru/HDS, MPG/ESO FEROS, HST /WFPC2, and Spitzer /IRS. We performed the first measurements of Kr, Fe, and recombination O abundance in this PN. The extremely small [Fe/H] implies that most Fe atoms are in the solid phase, considering into account the abundance of [Ar/H]. The Spitzer /IRS spectrum displays broad 16–24 μm and 30 μm features, as well as PAH bands at 6–9 and 10–14 μm. The unidentified broad 16–24 μm feature may not be related to iron sulphide (FeS), amorphous silicate, or PAHs. Using the spectral energy distribution model, we derived the luminosity and effective temperature of the central star, and the gas and dust masses. The observed elemental abundances and derived gas mass are in good agreement with asymptotic giant branch nucleosynthesis models for an initial mass of 1.90 M and a metallicity of Z  = 0.004. We infer that respectively about 80, 50, and 90 per cent of the Mg, S, and Fe atoms are in the solid phase. We also assessed the maximum possible magnesium sulphide (MgS) and iron-rich sulphide (Fe50S) masses and tested whether these species can produce the band flux of the observed 30 μm feature. Depending on what fraction of the sulphur is in sulphide molecules such as CS, we conclude that MgS and Fe50S could be possible carriers of the 30 μm feature in this PN.
    Print ISSN: 0035-8711
    Digitale ISSN: 1365-2966
    Thema: Physik
    Publiziert von Oxford University Press
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  • 96
    Publikationsdatum: 2015-08-12
    Beschreibung: We investigate the evolution of the H β + [O iii ] and [O ii ] luminosity functions from z  ~ 0.8 to ~5 in four redshift slices per emission line using data from the High- z Emission Line Survey (HiZELS). This is the first time that the H β + [O iii ] and [O ii ] luminosity functions have been studied at these redshifts in a self-consistent analysis. This is also the largest sample of [O ii ] and H β + [O iii ] emitters (3475 and 3298 emitters, respectively) in this redshift range, with large comoving volumes ~1  x  10 6  Mpc –3 in two independent volumes (COSMOS and UDS), greatly reducing the effects of cosmic variance. The emitters were selected by a combination of photometric redshift and colour–colour selections, as well as spectroscopic follow-up, including recent spectroscopic observations using DEIMOS and MOSFIRE on the Keck Telescopes and FMOS on Subaru. We find a strong increase in L * and a decrease in * for both H β + [O iii ] and [O ii ] emitters. We derive the [O ii ] star formation history of the Universe since z  ~ 5 and find that the cosmic star formation rate density (SFRD) rises from z  ~ 5 to ~3 and then drops towards z  ~ 0. We also find that our star formation history is able to reproduce the evolution of the stellar mass density up to z  ~ 5 based only on a single tracer of star formation. When comparing the H β + [O iii ] SFRDs to the [O ii ] and H α SFRD measurements in the literature, we find that there is a remarkable agreement, suggesting that the H β + [O iii ] sample is dominated by star-forming galaxies at high- z rather than AGNs.
    Print ISSN: 0035-8711
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    Thema: Physik
    Publiziert von Oxford University Press
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  • 97
    Publikationsdatum: 2015-08-12
    Beschreibung: We present a ‘two-fluid’ implementation of dust in smoothed particle hydrodynamics (SPH) in the test particle limit. The scheme is able to handle both short and long stopping times and reproduces the short friction time limit, which is not properly handled in other implementations. We apply novel tests to verify its accuracy and limitations, including multidimensional tests that have not been previously applied to the drag-coupled dust problem and which are particularly relevant to self-gravitating protoplanetary discs. Our tests demonstrate several key requirements for accurate simulations of gas–dust mixtures. First, in standard SPH particle jitter can degrade the dust solution, even when the gas density is well reproduced. The use of integral gradients, a Wendland kernel and a large number of neighbours can control this, albeit at a greater computational cost. Secondly, when it is necessary to limit the artificial viscosity we recommend using the Cullen & Dehnen switch, since the alternative, using α ~ 0.1, can generate a large velocity noise up to v   0.3 c s in the dust particles. Thirdly, we find that an accurate dust density estimate requires 〉400 neighbours, since, unlike the gas, the dust particles do not feel regularization forces. This density noise applies to all particle-based two-fluid implementations of dust, irrespective of the hydro solver and could lead to numerically induced fragmentation. Although our tests show accurate dusty gas simulations are possible, care must be taken to minimize the contribution from numerical noise.
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    Thema: Physik
    Publiziert von Oxford University Press
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  • 98
    Publikationsdatum: 2015-08-12
    Beschreibung: Halo abundance matching has been used to construct a one-parameter mapping between galaxies and dark matter haloes by assuming that halo mass and galaxy luminosity (or stellar mass) are monotonically related. While this approach has been reasonably successful, it is known that galaxies must be described by at least two parameters, as can be seen from the two-parameter Fundamental Plane on which massive early-type galaxies lie. In this paper, we derive a connection between initial dark matter density perturbations in the early Universe and present-day virialized dark matter haloes by assuming simple spherical collapse combined with conservation of mass and energy. We find that z  = 0 halo concentration, or alternatively the inner slope of the halo density profile α, is monotonically and positively correlated with the collapse redshift of the halo. This is qualitatively similar to the findings of some previous works based on numerical simulations, with which we compare our results. We then describe how the halo mass and concentration (or inner slope α) can be used as two halo parameters in combination with two parameters of early-type galaxies to create an improved abundance matching scheme. In a forthcoming paper, we will show an application of this scheme to galaxies on the Fundamental Plane.
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    Thema: Physik
    Publiziert von Oxford University Press
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  • 99
    Publikationsdatum: 2015-08-12
    Beschreibung: Large surveys have shown that red galaxies are preferentially aligned with their haloes, while blue galaxies have a more isotropic distribution. Since haloes generally align with their filaments, this introduces a bias in the measurement of the cosmic shear from weak lensing. It is therefore vitally important to understand why this difference arises. We explore the stability of different disc orientations within triaxial haloes. We show that, in the absence of gas, the disc orientation is most stable when its spin is along the minor axis of the halo. Instead when gas cools on to a disc, it is able to form in almost arbitrary orientation, including off the main planes of the halo (but avoiding an orientation perpendicular to the halo's intermediate axis). Substructure helps gasless galaxies reach alignment with the halo faster, but has less effect on galaxies when gas is cooling on to the disc. Our results provide a novel and natural interpretation for why red, gas poor galaxies are preferentially aligned with their halo, while blue, star-forming, galaxies have nearly random orientations, without requiring a connection between galaxies’ current star formation rate and their merger history.
    Print ISSN: 0035-8711
    Digitale ISSN: 1365-2966
    Thema: Physik
    Publiziert von Oxford University Press
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  • 100
    Publikationsdatum: 2015-08-09
    Beschreibung: In this work, we investigate the bifurcations of relative equilibria in the gravitational potential of asteroids. A theorem concerning a conserved quantity, which is about the eigenvalues and number of relative equilibria, is presented and proved. The conserved quantity can restrict the number of non-degenerate equilibria in the gravitational potential of an asteroid. It is concluded that the number of non-degenerate equilibria in the gravitational field of an asteroid varies in pairs and is an odd number. In addition, the conserved quantity can also restrict the kinds of bifurcations of relative equilibria in the gravitational potential of an asteroid when the parameter varies. Furthermore, studies have shown that there exist transcritical bifurcations, quasi-transcritical bifurcations, saddle–node bifurcations, saddle–saddle bifurcations, binary saddle–node bifurcations, supercritical pitchfork bifurcations, and subcritical pitchfork bifurcations for the relative equilibria in the gravitational potential of asteroids. It is found that for the asteroid 216 Kleopatra, when the rotation period varies as a parameter, the number of relative equilibria changes from 7 to 5 to 3 to 1, and the bifurcations for the relative equilibria are saddle–node bifurcations and saddle–saddle bifurcations.
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    Thema: Physik
    Publiziert von Oxford University Press
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