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  • Elsevier  (378,948)
  • Wiley  (79,956)
  • Oxford University Press  (31,156)
  • 2020-2023  (432)
  • 1995-1999  (489,628)
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  • 1
    Publication Date: 2024-06-17
    Description: Scientists have long attempted to explain why closely similar age patterns of death are characteristic of highly diverse human and nonhuman populations. Historical efforts to identify a general "law of mortality" from these patterns that applied across species ended in 1935 when it was declared that such a law did not exist. These early efforts were conducted using mortality curves based on all causes of death. The authors predict that if comparisons of mortality are based instead on "intrinsic" causes of death (i.e., deaths that reflect the basic biology of the organism), then age patterns of mortality consistent with the historical concept of a law might be revealed. Using data on laboratory animals and humans, they demonstrate that age patterns of intrinsic mortality overlap when graphed on a biologically comparable time scale. These results are consistent with the existence of a law of mortality following sexual maturity, as originally asserted by Benjamin Gompertz and Raymond Pearl. The societal, medical, and research implications of such a law are discussed.
    Type: Article , PeerReviewed
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  • 2
    Publication Date: 2024-03-20
    Description: Periphyton was grown on transparent plastic substrata in the Kiel Fjord and used for short-term laboratory experiments to study the feeding selectivity of the periwinkle Littorina littorea in response to the vertical structure of the periphyton. The susceptibility of algae to periwinkle grazing was assessed by comparing the species-specific biomass within the grazing tracks of the snails to the biomass outside the tracks. After 3 weeks of incubation, the periphyton consisted of a scattered monolayer of algal cells without vertical structure. No apparent grazing could be found. After 6 weeks of incubation, periphyton consisted of a tightly attached undergrowth (mainly Cocconeis scutellum, Bacillariophyceae, and Myrionema sp., Phaeophyceae) and canopy of filamentous (Melosira moniliformis, Bacillariophyceae) and stalked forms (Achnanthes longipes, Bacillariophyceae). The unicellular diatoms Fragilaria tabulata and Stauroneis constricta grew partly on the primary substratum and partly as epiphytes on the canopy species. The canopy species and the epiphytes were decimated inside the grazing tracks, while the tightly attached undergrowth species appeared ungrazed.
    Type: Article , PeerReviewed
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  • 3
    Publication Date: 2023-09-19
    Description: Major- and trace-element as well as Pb-isotope data are presented for greenschist- to amphibolite-facies greenstones from two locations: (1) metabasalt-breccias from the Galfipagos Rift at 100°W; and (2) metabasalt-breccias and unbrecciated greenstones from the Chile Ridge at 38°S. Greenstone-breccias from both locations display stockwork-like sulfide mineralizations related to the upflow portion of a hydrothermal convection system. Whereas Galfipagos Rift stockwork sulfides belong to the "normal" type containing Cu-Fe-sulfides, Chile Ridge stockwork sulfides are galena-rich Pb-Zn _ Cu-sulfides and represent a previously unknown type of sulfide mineralisation in a MORB environment. Geochemically, the greenstones can be divided into two types: (1) The unbrecciated galena-free greenstones from both Chile Ridge and Galfipagos Rift show at least a 10-20-fold Pb enrichment compared to fresh MORB. With respect to similar Pb enrichment measured in greenstones from two other locations, i.e. DSDP Hole 504B and Galfipagos Rift near 86°W, we suggest that this may be a general feature of all stockwork-mineralised oceanic greenstones. (2) The galena- and quartz-rich metabasalt-breccias from the Chile Ridge are up to 3000-fold enriched in Pb (up to 1000 Ixg/g Pb in the whole-rock analyses) compared to MORB and indicate Pb mineralisation two orders of magnitude higher than that of the "normal" greenstone-type. A mass-balance calculation carried out using crustal column thickness of 3000 m with a 200-m-thick greenstone layer and 0.15 m of galena-beating breccias shows that at the Chile Ridge ~ 42% of the entire Pb is concentrated in the greenstones. This suggests that the rest of the crustal column is depleted in 58% of its primary Pb content. This degree of depletion matches well with previous calculations that a 56% depletion of Pb in oceanic crust subjected to mantle-recycling via subduction would be necessary to yield a HIMU mantle source within 2 Ga. Despite the need for future investigations into the extent and volume of the Pb enrichment in Chile Ridge greenstones, we believe that this process of major Pb redistribution is capable of creating huge volumes of oceanic crust that on average are extremely Pb-depleted and which when recycled would produce the HIMU source. Keywords: Chile Ridge; Galfipagos Ridge; Hydrothermal alteration; Greenstones; Geochemistry; Mineralogy
    Type: Article , PeerReviewed
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  • 4
    Publication Date: 2022-12-27
    Description: Magmas often experience severe disequilibrium conditions during their migration through the Earth's crust and the subsequent emplacement on its surface. During their transport, magmas are subjected to a wide range of cooling (q) and deformation rates (), generating physico-chemical perturbations in the magmatic system able to inhibit or promote crystallization processes. Quantifying the magnitude and timescale of kinetic effects is essential to correctly constrain the rheological evolution of magmas and their ability to flow. Here we present a suite of cooling deformation experiments (CDE) conducted on a basalt from Mt. Etna (Sicily, Italy) to disentangle and model the concurrent effects of q (from 1 to 10 °C/min) and (from 1 to 10 s−1) on the rheology of the system. The analysis of the temporal evolution of viscosity indicates that both q and strongly affect the onset of crystallization and achievement of a rheological cut-off over time, which represents the steep viscosity increase responsible for inhibiting magma flow. Both these rheological thresholds occur at lower T and earlier in time with increasing q, as well as at higher T and earlier in time with increasing . To reproduce the observed effects of crystallization on the apparent viscosity, we adopt a stretched exponential function that identifies two main crystallization regimes: i) a first shear-induced crystallization regime, characterized by a gentle viscosity increase and ii) a second cooling-dominated regime, marked by a steeper viscosity increase. The relative extent of these crystallization regimes strictly depends on the interplay between q and on the crystallization kinetics and suggest a first order control of q and a subordinate role of .
    Description: Published
    Description: 117725
    Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2022-12-27
    Description: The characterization of the fling-step represents a challenging task due to the shortage of near-source records with permanent tectonic displacement and the limitation in retrieving the fling-amplitude from accelerometric waveforms. In recent years, innovative ground-motion processing techniques have been developed for a more accurate estimation of both fling-displacements and spectral displacements in contrast to traditional bandpass filtering, although their application is still unusual. In this paper, we exploit the newly released dataset of the Near-Source Strong-motion records (NESS2) uniformly processed with the extended BASeline COrrection technique (eBASCO), against which we propose: (1) a new empirically-based ground motion model (GMM) for the prediction of the fling-step, and (2) an adjustment factor of the spectral displacements predicted by a reference GMM to account for the contribution of the fling-step at long periods. Such models are in agreement with observations and existing GMMs, and thus could be advantageously employed in seismic hazard analyses.
    Description: Published
    Description: 107294
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2022-12-27
    Description: The 1915, Mw6.7, Fucino earthquake is one of the most destructive events occurred in the central-southern Apennines (Central Italy) in pre-instrumental era, involving normal faulting in a deep alluvial basin. This study shows the application of the empirical non-ergodic approach (NESK method) for mapping ground shaking related to this historical event, taking into account the regional features of source, propagation and site contributions. Corrections of the source-region and spatially correlated maps of site and path residuals are combined with median prediction at the reference rock (i.e. without site amplification) to generate spatially variable ground shaking and associated variability in terms of peak ground acceleration and spectral ordinates at vibration periods from 0.01s to 2s. The method captures the main spatial non-stationarities and anisotropies of the shaking fields produced by this earthquake in and around the Fucino basin. In particular, we obtain patterns of seismic motion quite in accordance with the results of other methods and the macroseismic intensity field. Marked amplifications of the shaking in the long-periods are also captured, due to the coupling of 3D site effects, especially in the deeper portion of the basin, with propagation effects mainly focused towards the eastern part of the fault. These results confirm that the non-ergodic shaking scenarios from NESK can provide useful indications even in the case of very complex seismological and geological contexts, such as in the case of strong events in deep sedimentary basins.
    Description: Published
    Description: 107622
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
    Publication Date: 2022-12-22
    Description: The geological carbon cycle has played a key role in controlling climate throughout Earth’s history. For the last ∼ 3 billion years plate tectonics has driven subduction. Subducted slabs have transported CO_2 from the lithosphere, hydrosphere, and atmosphere into the Earth, from where it may be released back to the surface through processes such as arc volcanism or can be stored in the deep interior over geological time. Carbonate-bearing sediments and basalts of altered oceanic crust are the primary media by which carbon is subducted. Therefore, quantifying the depth and amount of CO_2 released from different carbonate-bearing lithologies during subduction is fundamental to understanding whether CO_2 is recycled through arc volcanism or buried in the mantle. The magnitude of CO_2 released from subducting slabs at fore- and sub-arc depths is controlled by processes including ocean crust alteration (i.e., carbonation), metamorphic decarbonation, carbonate dissolution and slab-melting. However, the relative contribution of these processes to overall slab decarbonation is still debated, and will be complex given the variety of sedimentary lithologies and subduction geodynamics. Here, we present a global arc-by-arc lithology-specific analysis of the magnitude of slab CO_2 released purely by metamorphic decarbonation of carbonate-bearing sediment and basalt during subduction of altered oceanic crust, using a thermodynamically rigorous model. We find that metamorphic decarbonation is highly efficient in low carbonate sediments, such as carbonated clay, and in carbonated basalts of altered oceanic crust, causing all of their CO_2 to be removed. Sediments with medium and higher carbonate contents, such as chalk and limestone, are only partially decarbonated, but the combination of metamorphic decarbonation and carbonate dissolution promotes efficient carbon loss. Together they can explain observed magmatic CO_2 emissions in carbonate-rich arcs. Warm slabs, such as Mexico and Cascadia, produce complete metamorphic decarbonation of carbonate minerals beneath fore-arcs. Under more common cold and intermediate thermal regimes metamorphic decarbonation of carbonate minerals occurs at depths between ∼ 80 and 170 km ( ∼ 2.3 to 5.5 GPa) promoting CO_2 input into the mantle sources of volcanic arcs. Overall, our results demonstrate that sub-arc decarbonation is typically considered an important potential source of slab-derived CO_2 , which needs to be considered together with carbonate dissolution to explain observed volcanic CO_2 emissions. In many arcs the modelled CO_2 flux from sediment and basalts of altered oceanic crust into the wedge exceeds the observed CO 2 output suggesting that the mantle wedge and arc lithosphere may sequester some CO_2 .
    Description: Published
    Description: 117945
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
    Publication Date: 2022-12-22
    Description: This chapter aims at introducing the reader to general concepts about the main forcings of the Mediterranean Sea, in terms of exchanges through the Strait of Gibraltar, and air-sea exchanges of heat, freshwater, and momentum. These forcings are also responsible for the peculiar characteristics of Mediterranean water masses. Therefore, the chapter continues with giving a general explanation on water mass analysis, and then it describes the properties and vertical and horizontal distributions of the main Mediterranean water masses. To conclude, the reader is introduced to the use of other (biogeochemical, and chemical) tracers of water masses, with a focus on the Mediterranean Sea.
    Type: Book chapter , PeerReviewed
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  • 9
    Publication Date: 2022-12-19
    Description: New sedimentological data of facies and diagenesis as well as chronological data including strontium (87Sr/86Sr)-isotope ratios and uranium (U)-series dating, radiocarbon (14C) accelerator mass spectrometry (AMS) dating and biostratigraphy from elevated reef terraces (makatea) in the southern Cook Islands of Mangaia, Rarotonga and Aitutaki contribute to controversial discussions regarding age and sea-level relationships of these occurrences during the Neogene and Quaternary. The oldest limestones of the uplifted makatea island of Mangaia include reef-related facies which are mid-Miocene in age, based on new Sr-isotope and biostratigraphical data. In between these older deposits and the lowest coastal reef terrace of marine isotope stage (MIS) 5e, various older Pleistocene reef-related facies were identified. Based on Sr-isotope ratios, these were deposited during earlier Pleistocene highstands (as old as 2.28 Ma). Rare reef terraces on Rarotonga belong to the Plio-Pleistocene and the late Miocene, according to 87Sr/86Sr ratios. The late Miocene age is enigmatic as it exceeds the age of subaerially exposed volcanic rocks of Rarotonga island. The fossil reef could have formed on an older submarine volcanic high that was later displaced by younger volcanism to its present position, or the Sr-age could be too old due to diagenetic resetting. The Plio-Pleistocene Rarotonga reef terraces are overlain irregularly by Holocene reef deposits that are interpreted as storm rubble. Reef terraces on Aitutaki represent evidence of a higher-than-present (up to 1 m) sea-level during the late Holocene, based on 14C AMS age data. They are very similar to elevated late Holocene reefs of adjacent French Polynesia with regard to composition, elevation and age.
    Type: Book chapter , NonPeerReviewed
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  • 10
    Publication Date: 2022-12-14
    Description: New constraints were set on the age of marine deposits in the Pontine Plain and of the related sea level indicators on the Tyrrhenian Sea coast of central Italy by twelve new 40Ar/39Ar dates on detrital sanidine from these deposits. By combining a new geomorphologic analysis and previous morpho-pedostratigraphic studies with these geochronological constraints we reconstructed the geometry of four marine terraces and correlated these with the highstands during the marine isotopic stages (MIS) 9.3, 7.5, 5.5 and 5.3. Results point to a progressive tilting of the terraces, the elevation increasing from the SE to the NW due to differential tectonic uplift that occurred over the last 300 ka. We identified a MIS 9 sea level at 30 - 25 m asl in the northwestern sector, whereas the MIS 7.5 sea level reached a maximum of 24 m asl in the NWand descended to 18 m asl in the central sector. Moderate tilting affected the MIS 5.5 sea level, with an elevation of 12 to 9.5 m asl in between the Anzio and Circeo headlands. Finally, an undeformed MIS 5.3 sea level at ca. 3 m asl is indicated throughout this coastal reach, confirming previous data suggesting a much higher absolute sea level during this highstand with respect to the d18O-derived predicted level.
    Description: Published
    Description: 107866
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Marine terraces ; MIS 5 sea level ; Pontine Plain ; Tyrrhenian Sea ; 04.04. Geology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 11
    Publication Date: 2022-12-12
    Description: Author Posting. © The Author(s), 2022. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in . Journal of Phycology (2022), https://doi.org/10.1111/jpy.13230.
    Description: The marine green alga Brilliantia kiribatiensis gen. et sp. nov. is described from samples collected from the coral reefs of the Southern Line Islands, Republic of Kiribati, Pacific Ocean. Phylogenetic analysis of sequences of the large- and small-subunit rDNA and the rDNA internal transcribed spacer region revealed that Brilliantia is a member of the Boodleaceae (Cladophorales), containing the genera Apjohnia, Boodlea, Cladophoropsis, Chamaedoris, Phyllodictyon, and Struvea. Within this clade it formed a distinct lineage, sister to Struvea elegans, but more distantly related to the bona fide Struvea species (including the type S. plumosa). Brilliantia differs from the other genera by having a very simple architecture forming upright, unbranched, single-celled filaments attached to the substratum by a rhizoidal mat. Cell division occurs by segregative cell division only at the onset of reproduction. Based on current sample collection, B. kiribatiensis seems to be largely restricted to the Southern Line Islands, although it was also observed on neighboring islands, including Orona Atoll in the Phoenix Islands of Kiribati, and the Rangiroa and Takapoto Atolls in the Tuamotus of French Polynesia. This discovery highlights the likeliness that there is still much biodiversity yet to be discovered from these remote and pristine reefs of the central Pacific.
    Description: National Geographic Society
    Description: 2022-12-12
    Keywords: 18S nuclear ribosomal DNA ; Chlorophyta ; Cladophorales ; Molecular phylogeny ; Siphonocladales ; Ulvophyceae
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 12
    Publication Date: 2022-12-02
    Description: A key requirement for geological CO2 storage is site integrity management and monitoring during operation through to the post decommissioning period. This paper focuses on monitoring deformation of the ground surface and seabed as a proxy for overall deformation in the reservoir and surrounding layers. The objective is to inform, based on deformation data, on how the reservoir is responding to CO2 injection and to ensure any issues with regard to storage integrity are rapidly detected. The magnitude and pattern of deformation at the surface reveals geomechanical/hydromechanical processes that occur in reservoir due to CO2 injection. We acquired deformation data from the In Salah CO2 injection site and from four additional study cases during the course of this study; one in the onshore UK, the other a combined campaign onshore Norway and offshore Germany, and the third in onshore Japan. Significant developments in measurement techniques, processing tools and interpretation algorithms were developed through this project. Models were then developed to simulate the observed data and to couple surface deformation to displacement in the subsurface. The results show millimeter-scale deformations in the subsurface have a signature at the surface that can be captured by the tools and workflows developed in this project. These deformations, particularly the patterns, are important factors to consider when monitoring a CO2 storage site.
    Type: Article , NonPeerReviewed
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  • 13
    Publication Date: 2022-12-01
    Description: An accurate survey of old and new datasets allowed us to probe the nature and role of fluids in the seismogenic processes of the Apennines mountain range in Italy. New datasets include the 1985–2021 instrumented seismicity catalog, the computed seismogenic thickness, and geodetic velocities and strains, whereas data from the literature comprise focal mechanism solutions, CO2 release, Moho depth, tomographic seismic velocities, heat flow and Bouguer gravity anomalies. Most of the inspected datasets highlight differences between the western and eastern domains of the Apennines, while the transition zone is marked by high geodetic strain, prevailing uplift at the surface and high seismic release, and spatially corresponds with the overlapping Tyrrhenian and Adriatic Mohos. Published tomographic models suggest the presence of a large hot asthenospheric mantle wedge which intrudes beneath the western side of the Apennines and disappears at the southern tip of the southern Apennines. This wedge modulates the thermal structure and rheology of the overlying crust as well as the melting of carbonate-rich sediments of the subducting Adriatic lithosphere. As a result, CO2-rich fluids of mantle-origin have been recognized in association with the occurrence of destructive seismic sequences in the Apennines. The stretched western domain of the Apennines is characterized by a broad pattern of emissions from CO2-rich fluids that vanishes beneath the axial belt of the chain, where fluids are instead trapped within crustal overpressurized reservoirs, favoring their involvement in the evolution of destructive seismic sequences in that region. In the Apennines, areas with high mantle He are associated with different degrees of metasomatism of the mantle wedge from north to south. Beneath the chain, the thickness and permeability of the crust control the formation of overpressurized fluid zones at depth and the seismicity is favored by extensional faults that act as high permeability pathways. This multidisciplinary study aims to contribute to our understanding of the fluid-related mechanisms of earthquake preparation, nucleation and evolution encouraging a multiparametric monitoring system of different geophysical and geochemical observables that could lead the creation of a data-constrained and reliable conceptual model of the role of fluids in the preparatory phase of earthquakes in the Apennines.
    Description: The INGV Earthquake Department Strategic Project FURTHER “The role of FlUids in the pReparaTory pHase of EaRthquakes in Southern Apennines”
    Description: Published
    Description: 104236
    Description: 1T. Struttura della Terra
    Description: 2T. Deformazione crostale attiva
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: 4T. Sismicità dell'Italia
    Description: 9T. Geochimica dei fluidi applicata allo studio e al monitoraggio di aree sismiche
    Description: JCR Journal
    Keywords: CO2 Earth degassing ; Earthquakes ; Mantle wedge ; Subduction ; Apennines ; 04.06. Seismology ; Geochemistry ; 04.03. Geodesy
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 14
    Publication Date: 2022-11-22
    Description: To refine knowledge about terrace phases and uplift history for a tectonically poor deformed region, we apply the synchronous correlation method to reconstruct the chronology of a poorly constrained sequence of raised palaeoshorelines on the Apulian foreland, southern Italy. This work uses new chronological constraints obtained by amino acid racemisation (AAR) and isoleucine/alloisoleucine epimerisation (IE) on Patella spp., Thetystrombus latus (Gmelin), Glycymeris sp., and ostracods and U-series dating on corals Hoplangia durotrix Gosse and Cladocora caespitosa Linneo. This procedure provides a quantitative estimate of the vertical movements and associated rates within a region of the Apulian foreland. The synchronous correlation method uses sea-level highstands and uplift rate(s) as inputs; in particular, for sea-level highstands, the inputs are the age of the highstands and the sea-level elevation of the highstands relative to the present-day sea level. The output is a set of currently expected elevations of each sea-level highstand (the present elevations of palaeoshorelines). We then used regression analysis to assess the robustness between our observed palaeoshorelines and expected elevations of sea-level highstands. Our results show that the best fitting scenario is obtained using the sea-level curves of (i) Waelbroeck et al. (2002) from present to 410 ky BP and (ii) Rohling et al. (2014) from 410 to 590 ky BP as inputs for our synchronous correlation method, with uplift rates ranging from 0.09 mm/y to 0.07 mm/y with a mean value of 0.08 mm/y from 590 ky BP onwards. We recognised palaeoshorelines in the field belonging to the following highstands: 120 ky BP (MIS 5.5, second peak), 127 ky BP (MIS 5.5, first peak), 212 ky BP (MIS 7.3), 330 ky BP (MIS 9.3), 410 (MIS 11), 525 ky BP (MIS 13.3), and 590 ky BP (MIS 15). Our results show field observations of the reoccupation effect of younger palaeoshorelines over older ones due to the relatively slow uplift rates measured in the investigated area as predicted by our synchronous correlation method. In particular, we show a well-mapped and described reoccupation of the MIS 5.5 palaeoshoreline over the MIS 7.3 palaeoshoreline, constrained by new absolute dating. In addition, the data from the Apulian foreland suggest an MIS 7.3 highstand close to the present sea level.
    Description: Published
    Description: 108530
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Crustal Deformation ; Uplift ; Marine terraces ; Absolute dating ; 04.04. Geology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 15
    Publication Date: 2022-11-18
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wiebe, P., Baumgartner, M., Copley, N., Lawson, G., Davis, C., Ji, R., & Greene, C. Does predation control the diapausing stock of Calanus finmarchicus in the Gulf of Maine? Progress In Oceanography, 206, (2022): 102861, https://doi.org/10.1016/j.pocean.2022.102861.
    Description: The variability of zooplankton populations is controlled by external and internal forcing, with the former being principally large-scale changes in circulation, and the latter being driven by in situ growth, competition, and predation. Assessing the relative importance of these forcings is challenging and requires analyses of multifaceted observational data. As part of the U.S. GLOBEC Georges Bank program, a series of cruises were conducted in fall 1997, 1998, and 1999 to survey diapausing populations of Calanus finmarchicus and their predators in Wilkinson, Jordan, and Georges Basins of the Gulf of Maine. Station and underway sampling were conducted using net (1 m2 MOCNESS) and bioacoustic (BIOMAPER-II) systems, respectively, to acquire vertically stratified data for zooplankton biomass, taxonomic, size, and life-stage composition, together with associated environmental data. The results show that the autumn diapausing C. finmarchicus abundance was much lower in 1998 than in 1997 or 1999, even though the overall zooplankton biomass levels were comparable between the three years. The size frequency distribution of the diapausing individuals had a bi-modal pattern in 1997 and 1999, but a single mode in 1998, indicating the demise of an early cohort of the diapausing stock. The relative biomass and computed energy demand of potential invertebrate predators (euphausiids, decapods, medusae, and siphonophores) was found to be higher in 1998 and could account for the missing C. finmarchicus cohort. Evidence collected from this study supports the hypothesis that local predation has the potential to control the diapausing stock of C. finmarchicus in the Gulf of Maine.
    Description: RJ received support from the Northeast US Shelf Long Term Ecological Research (NES-LTER) project (NSF OCE-1655686) and the US MBON Gulf of Maine project to NERACOOS (NOPP award NA19NOS0120197 and BOEMUMaine Cooperative Agreement M19AC00022) for analyzing the size data and working on the manuscript. Research support was provided by the US GLOBEC Georges Bank Program through the CILER Cooperative Agreement NA-67RJO148 (NOAA Coastal Ocean Program).
    Keywords: Gulf of Maine ; Calanus finmarchicus ; Fall abundance variability ; Calanus C5 size variability ; Predation control
    Repository Name: Woods Hole Open Access Server
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  • 16
    Publication Date: 2022-11-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sassenhagen, I., Erdner, D., Lougheed, B., Richlen, M., & SjÖqvist, C. Estimating genotypic richness and proportion of identical multi-locus genotypes in aquatic microalgal populations. Journal of Plankton Research, 44(4), (2022): 559-572, https://doi.org/10.1093/plankt/fbac034.
    Description: The majority of microalgal species reproduce asexually, yet population genetic studies rarely find identical multi-locus genotypes (MLG) in microalgal blooms. Instead, population genetic studies identify large genotypic diversity in most microalgal species. This paradox of frequent asexual reproduction but low number of identical genotypes hampers interpretations of microalgal genotypic diversity. We present a computer model for estimating, for the first time, the number of distinct MLGs by simulating microalgal population composition after defined exponential growth periods. The simulations highlighted the effects of initial genotypic diversity, sample size and intraspecific differences in growth rates on the probability of isolating identical genotypes. We estimated the genotypic richness for five natural microalgal species with available high-resolution population genetic data and monitoring-based growth rates, indicating 500 000 to 2 000 000 distinct genotypes for species with few observed clonal replicates (〈5%). Furthermore, our simulations indicated high variability in genotypic richness over time and among microalgal species. Genotypic richness was also strongly impacted by intraspecific variability in growth rates. The probability of finding identical MLGs and sampling a representative fraction of genotypes decreased noticeably with smaller sample sizes, challenging the detection of differences in genotypic diversity with typical isolate numbers in the field.
    Description: This work was supported by the Olle Engkvist foundation [200-0564 to I.S.]; the Swedish Research Council (Vetenskapsrådet) [2018-04992 to B.C.L.]; the Academy of Finland [321609 to C.S.]; the National Science Foundation [NSF OCE-1841811 to D.L.E. and M.L.R.]; and the National Institute of Environmental Health [NIEHS P01ES028949 to M.L.R.].
    Repository Name: Woods Hole Open Access Server
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  • 17
    Publication Date: 2022-11-07
    Description: Microplastics (MP) are defined as synthetic organic pollutants sized 〈5 mm and have been recorded in various environments worldwide. Due to their small size, they pose a potential risk for many organisms throughout the food web. However, little is known about MP distribution patterns and associated transport mechanisms. Rivers may act as pathways for MP into marine environments. In this study, we investigate the occurrence of MP in the estuary and lower stretch of the second-largest German River, the Weser, representative of a significant interface between fresh water and marine environments. The aim of the study was to enhance the general understanding by providing novel, comprehensive data and suggestions for future studies on estuarine systems. Surface water samples of two different size classes were collected by ship using an on-board filtration system (11-500 µm fraction) and net sampling (500-5000 µm fraction). After a thorough sample preparation, all samples were analysed with Focal Plane Array (FPA) Fourier Transform Infrared (FTIR) spectroscopy and Attenuated Total Reflection (ATR) FTIR spectroscopy in order to obtain information on MP concentrations, polymer composition and size distribution. Our findings show highest concentrations in the 11-500 µm fraction (2.3 × 101 − 9.7 × 103 m−3), with the polymer cluster acrylates/polyurethanes/varnish being dominant. The 〉500 µm fraction was dominated by polyethylene. Estimated MP concentrations generally increased in the Turbidity Maximum Zone (TMZ) and decreased towards the open sea. This study contributes to the current research by providing novel insights into the MP pollution of the estuary and lower stretch of an important European river and provides implications for future MP monitoring measures.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 18
    Publication Date: 2022-11-07
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kourantidou, M., & Jin, D. Mesopelagic-epipelagic fish nexus in viability and feasibility of commercial-scale mesopelagic fisheries. Natural Resource Modeling, 35(4), (2022): e12350, https://doi.org/10.1111/nrm.12350.
    Description: While considerable scientific uncertainties persist for mesopelagic ecosystems, the fishing industry has developed a great interest in commercial exploitation with improved technologies as part of their search for new sources of feed for fishmeal and fish oil for aquaculture, which will intensify with the planet's growing population. The multiple uncertainties surrounding the ecosystem structure and particularly the size of biomass, hinder a good understanding of the risks associated with large-scale exploitation, which is needed for a management framework for sustainable ocean uses. Despite concerns regarding irreversible losses triggered by commercial fishing, work exploring the vulnerability of mesopelagic fish to harvesting is largely missing. This study investigates the economic feasibility of mesopelagic fishing which is the primary driver for any possible future expansion. Using very limited information currently available, we conduct a high-level assessment focusing on key ecological and economic interactions and develop an initial understanding of the economic feasibility of commercial harvesting for mesopelagic fish in the coming years. We conduct simulations using a classical bioeconomic model that captures two species groups, mesopelagic and epipelagic fish, using a wide range of price and cost parameters. We analyze different scenarios for the economic profitability of the fishery in a regional fishery management context. The results of our study highlight the importance of better understanding key biological and ecological mechanisms and parameters which can in turn help inform policies aimed at protecting the mesopelagic.
    Description: This study is supported by WHOI's Ocean Twilight Zone program which is part of the Audacious Project, a collaborative endeavor, housed at TED.
    Keywords: Bioeconomic analysis ; Commercial fisheries ; Ecological interactions ; Economic feasibility ; Mesopelagic fish ; Twilight zone
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2022-11-03
    Description: This paper presents new chemical and isotopic data on gases from deep oil and gas fields, bubbling gases, dissolved gases in groundwaters and dry seeps of the Southern Po River Basin (Emilia-Romagna, Italy), aiming to (i) characterize and differentiate the various types of deep natural gases; (ii) identify the source(s) of methane and light hydrocarbons in shallow aquifers and surface gas-rich emissions; (iii) propose a conceptual model of natural fluid migration pathways in the sedimentary prism of the Southern Po River Basin. Based on the isotopic composition of CH4 and C2–C4 n-alkanes, CH4/(C2H6+C3H8) ratio, relative proportion of the C7 hydrocarbons and relative concentration of cyclic compounds with respect to the total cyclic abundance, three main deep reservoirs of hydrocarbons are identified in the subsurface of the Southern Po River Basin: (1) microbial gas hosted in Pliocene-Pleistocene marine sediments, (2) thermogenic gas hosted in Miocene deposits and (3) thermogenic gas produced in Triassic carbonates. Helium isotopes of these deep fluids indicate an almost pure crustal origin (Rc/Ra values = 0.014–0.04), with negligible contributions from mantle-derived helium. A variable contribution of atmosphere-derived fluids is highlighted by low 4He/20Ne (down to 5.42) and 40Ar/36Ar (≤319.5) values. Comparison of chemical and isotopic signatures of deep and surficial hydrocarbon occurrences suggests that methane in shallow groundwaters or gas seeps is sourced by microbial gas migrating upward from deep Plio-Pleistocene reservoirs, with no detectable contributions of Triassic or Miocene thermogenic hydrocarbons. At shallow depths (roughly around 20–50 m.b.g.l.), Plio-Pleistocene microbial methane appears to be mainly stored in anoxic aquifers. However, where CH4 further migrates upwards and reaches aerobic environments (e.g., aquifers or soils), it readily undergoes a process of exothermic microbial oxidation mediated by methanotrophic bacteria. Where the structural architecture of the sedimentary sequence favors the migration of fluids, the methanotrophic biofilter is bypassed and CH4 is discharged through soil diffuse degassing or gas bubbling at water wells. We argue that microbial consumption might be able to bio-sequester significant amounts of Plio-Pleistocene deep-sourced methane in the form of CO2 and biomass. Such process might be widespread in the subsurface of the Southern Po River Basin and, possibly, in other foreland basins worldwide.
    Description: Published
    Description: 105981
    Description: 9T. Geochimica dei fluidi applicata allo studio e al monitoraggio di aree sismiche
    Description: JCR Journal
    Keywords: Methane ; Po river basin ; Emilia-romagna region ; Natural gas geochemistry ; Hydrocarbon source rocks ; Gas accumulation and migration ; Thermogenic gas ; Microbial gas
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 20
    Publication Date: 2022-10-28
    Description: Katla is a threatening volcano in Iceland, partly covered by the M\'yrdalsj\"okull ice cap. The volcano has a large caldera with several active geothermal areas. A peculiar cluster of long-period seismic events started on Katla's south flank in July 2011, during an unrest episode in the caldera that culminated in a glacier outburst. The seismic events were tightly clustered at shallow depth in the Gvendarfell area, 4 km south of the caldera, under a small glacier stream on the southern margin of M\'yrdalsj\"okull. No seismic events were known to have occurred in this area before. The most striking feature of this seismic cluster is its temporal pattern, characterized by regular intervals between repeating seismic events, modulated by a seasonal variation. Remarkable is also the stability of both the time and waveform features over a long time period, around 3.5 years. No comparable examples have been found in the literature. Both volcanic and glacial processes can produce similar waveforms and therefore have to be considered as potential seismic sources. Discerning between these two causes is critical for monitoring glacier-clad volcanoes and has been controversial at Katla. For this new seismic cluster on the south flank we regard volcano-related processes as more likely than glacial ones for the following reasons: 1) the seismic activity started during an unrest episode involving sudden melting of the glacier and a j\"okulhlaup; 2) the glacier stream is small and stagnant; 3) the seismicity remains regular and stable for years; 4) there is no apparent correlation with short-term weather changes, such as rain storms. We suggest that a small, shallow hydrothermal system was activated on Katla's south flank in 2011, either by a minor magmatic injection or by changes of permeability in a local crack system.
    Description: Published
    Description: 28-40
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Keywords: Physics - Geophysics; Physics - Geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
    Publication Date: 2022-10-28
    Description: A representative fluid sampling of surface geothermal manifestations and its analytical data quality assurance and quality control (QA/QC) are challenging aspects of understanding the geothermal reservoir processes. To achieve these goals, an interlaboratory test for the chemical analyses of ten water samples: one synthetic water, two lake waters (i.e., duplicated), one stream water, and six water samples from two geothermal wells of Los Azufres Geothermal field (LAGF), Michoacan, Mexico, was conducted. The geothermal wells were sampled at four points: (1) total discharge of condensed fluid at the wellhead, (2) separate liquid condensed in the well separator, (3) flushed liquid at the weir box, and (4) separated vapor condensed at the well-separator (data taken from Verma et al., 2022). Sixteen laboratories from ten countries reported their results. The pH, electrical conductivity, Ca2+, Li+, SO4 2 B, and Si-total measurements were 8.35 ± 0.04, 12.25 ± 0.53 mS/cm, 25 ± 1 mg/l, 18 ± 1 mg/l, 569 ± 33 mg/l, 320 ± 21 mg/l, and 20.5 ± 0.7 mg/l, which are close to the conventional true values, 8.40, 12.31 mS/cm, 23 mg/l, 19 mg/l, 647 mg/l, 330 mg/l, and 20.0 mg/l, respectively. Analytical errors for major ions, Na+, Cl
    Description: Published
    Description: 105477
    Description: 2IT. Laboratori analitici e sperimentali
    Description: JCR Journal
    Keywords: Geothermal water ; Inter-laboratory test ; Geothermal system ; Los Azufres ; Geochemical modeling ; Uncertainty propagation ; NIST Uncertainty machine ; 05.04. Instrumentation and techniques of general interest
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 22
    Publication Date: 2022-10-28
    Description: Relative relocation methods are commonly used to precisely relocate earthquake clusters consisting of similar waveforms. Repeating waveforms are often recorded at volcanoes, where, however, the crust structure is expected to contain strong heterogeneities and therefore the 1D velocity model assumption that is made in most location strategies is not likely to describe reality. A peculiar cluster of repeating low-frequency seismic events was recorded on the south flank of Katla volcano (Iceland) from 2011. As the hypocentres are located at the rim of the glacier, the seismicity may be due to volcanic or glacial processes. Information on the size and shape of the cluster may help constraining the source process. The extreme similarity of waveforms points to a very small spatial distribution of hypocentres. In order to extract meaningful information about size and shape of the cluster, we minimize uncertainty by optimizing the cross-correlation measurements and relative-relocation process. With a synthetic test we determine the best parameters for differential-time measurements and estimate their uncertainties, specifically for each waveform. We design a relocation strategy to work without a predefined velocity model, by formulating and inverting the problem to seek changes in both location and slowness, thus accounting for azimuth, take-off angles and velocity deviations from a 1D model. We solve the inversion explicitly in order to propagate data errors through the calculation. With this approach we are able to resolve a source volume few tens of meters wide on horizontal directions and around 100 meters in depth. There is no suggestion that the hypocentres lie on a single fault plane and the depth distribution indicates that their source is unlikely to be related to glacial processes as the ice thickness is not expected to exceed few tens of meters in the source area.
    Description: Published
    Description: 1244–1257
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Keywords: Physics - Geophysics; Physics - Geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 23
    Publication Date: 2022-10-28
    Description: A 23 hour tremor burst was recorded on July 8-9th 2011 at the Katla subglacial volcano, one of the most active and hazardous volcanoes in Iceland. This was associated with deepening of cauldrons on the ice cap and a glacial flood that caused damage to infrastructure. Increased earthquake activity within the caldera started a few days before and lasted for months afterwards and new seismic activity started on the south flank. No visible eruption broke the ice and the question arose as to whether this episode relates to a minor subglacial eruption with the tremor being generated by volcanic processes, or by the flood. The tremor signal consisted of bursts with varying amplitude and duration. We have identified and described three different tremor phases, based on amplitude and frequency features. A tremor phase associated with the flood was recorded only at stations closest to the river that flooded, correlating in time with rising water level observed at gauging stations. Using back-projection of double cross-correlations, two other phases have been located near the active ice cauldrons and are interpreted to be caused by volcanic or hydrothermal processes. The greatly increased seismicity and evidence of rapid melting of the glacier may be explained by a minor sub-glacial eruption. It is also plausible that the tremor was generated by hydrothermal boiling and/or explosions with no magma involved. This may have been induced by pressure drop triggered by the release of water when the glacial flood started. All interpretations require an increase of heat released by the volcano.
    Description: Published
    Description: 63-78
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Keywords: Physics - Geophysics; Physics - Geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kuehn, E., Clausen, D. S., Null, R. W., Metzger, B. M., Willis, A. D., & Ozpolat, B. D. Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, (2021.): 1-16, https://doi.org/10.1002/jez.b.23100.
    Description: Development of sexual characters and generation of gametes are tightly coupled with growth. Platynereis dumerilii is a marine annelid that has been used to study germline development and gametogenesis. P. dumerilii has germ cell clusters found across the body in the juvenile worms, and the clusters eventually form the gametes. Like other segmented worms, P. dumerilii grows by adding new segments at its posterior end. The number of segments reflect the growth state of the worms and therefore is a useful and measurable growth state metric to study the growth-reproduction crosstalk. To understand how growth correlates with progression of gametogenesis, we investigated germline development across several developmental stages. We discovered a distinct transition period when worms increase the number of germline clusters at a particular segment number threshold. Additionally, we found that keeping worms short in segment number, by manipulating environmental conditions or via amputations, supported a segment number threshold requirement for germline development. Finally, we asked if these clusters in P. dumerilii play a role in regeneration (as similar free-roaming cells are observed in Hydra and planarian regeneration) and found that the clusters were not required for regeneration in P. dumerilii, suggesting a strictly germline nature. Overall, these molecular analyses suggest a previously unidentified developmental transition dependent on the growth state of juvenile P. dumerilii leading to substantially increased germline expansion.
    Description: Research reported in this publication was supported by the National Institute of General Medical Sciences of the National Institutes of Health under Award Number R35GM138008 (to BDÖ) and R35GM133420 (to ADW) and Hibbitt Startup Funds (to BDÖ).
    Keywords: Annelida ; Critical size ; Developmental transition ; Gametogenesis ; Sexual reproduction
    Repository Name: Woods Hole Open Access Server
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  • 25
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, A. M., Barrio-Hernandez, I., Hoving, H. J., Tafur-Jimenez, R., Chu, C., Frazao, B., Petersen, B., Penaloza, F., Musacchia, F., Alexander, G. C., Osorio, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Ponten, T., Nielsen, R., & Gilbert, M. T. P. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience, 9(1), (2020): giz152. doi: 10.1093/gigascience/giz152.
    Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea–dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.
    Description: R.R.F. thanks the Villum Fonden for grant VKR023446 (Villum Fonden Young Investigator Grant), the Portuguese Science Foundation (FCT) for grant PTDC/MAR/115347/2009; COMPETE-FCOMP-01-012; FEDER-015453, Marie Curie Actions (FP7-PEOPLE-2010-IEF, Proposal 272927), and the Danish National Research Foundation (DNRF96) for its funding of the Center for Macroecology, Evolution, and Climate. H.O. thanks the Rede Nacional de Espectrometria de Massa, ROTEIRO/0028/2013, ref. LISBOA-01-0145-FEDER-022125, supported by COMPETE and North Portugal Regional Operational Programme (Norte2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). A.C. thanks FCT for project UID/Multi/04423/2019. M.P. acknowledges the support from the Wellcome Trust (grant number WT108749/Z/15/Z) and the European Molecular Biology Laboratory. M.P.T.G. thanks the Danish National Research Foundation for its funding of the Center for GeoGenetics (grant DNRF94) and Lundbeck Foundation for grant R52–5062 on Pathogen Palaeogenomics. S.R. was supported by the Novo Nordisk Foundation grant NNF14CC0001. A.H. is supported by a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (fellowship reference: BB/N020146/1). T.B. is supported by the Biotechnology and Biological Sciences Research Council-funded South West Biosciences Doctoral Training Partnership (training grant reference BB/M009122/1). This work was partially funded by the Lundbeck Foundation (R52-A4895 to B.B.). H.J.T.H. was supported by the David and Lucile Packard Foundation, the Netherlands Organization for Scientific Research (#825.09.016), and currently by the Deutsche Forschungsgemeinschaft (DFG) under grant HO 5569/2-1 (Emmy Noether Junior Research Group). T.V. and B. Brejova were supported by grants from the Slovak grant agency VEGA (1/0684/16, 1/0458/18). F.S. was supported by a PhD grant (SFRH/BD/126560/2016) from FCT. A.A. was partly supported by the FCT project PTDC/CTA-AMB/31774/2017. C.C. and Y.W. are partly supported by grant IIS-1526415 from the US National Science Foundation. Computation for the work described in this article was partially supported by the DeiC National Life Science Supercomputer at DTU.
    Keywords: Cephalopod ; Invertebrate ; Genome assembly
    Repository Name: Woods Hole Open Access Server
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  • 26
    Publication Date: 2022-10-27
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ritschard, E. A., Whitelaw, B., Albertin, C. B., Cooke, I. R., Strugnell, J. M., & Simakov, O. Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods: co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of cephalopod novelties. BioEssays, 41, (2019): 1900073, doi: 10.1002/bies.201900073.
    Description: How genomic innovation translates into organismal organization remains largely unanswered. Possessing the largest invertebrate nervous system, in conjunction with many species‐specific organs, coleoid cephalopods (octopuses, squids, cuttlefishes) provide exciting model systems to investigate how organismal novelties evolve. However, dissecting these processes requires novel approaches that enable deeper interrogation of genome evolution. Here, the existence of specific sets of genomic co‐evolutionary signatures between expanded gene families, genome reorganization, and novel genes is posited. It is reasoned that their co‐evolution has contributed to the complex organization of cephalopod nervous systems and the emergence of ecologically unique organs. In the course of reviewing this field, how the first cephalopod genomic studies have begun to shed light on the molecular underpinnings of morphological novelty is illustrated and their impact on directing future research is described. It is argued that the application and evolutionary profiling of evolutionary signatures from these studies will help identify and dissect the organismal principles of cephalopod innovations. By providing specific examples, the implications of this approach both within and beyond cephalopod biology are discussed.
    Description: E.A.R. and O.S. are supported by the Austrian Science Fund (Grant No. P30686‐B29). E.A.R. is supported by Stazione Zoologica Anton Dohrn (Naples, Italy) PhD Program. The authors wish to thank Graziano Fiorito (SZN, Italy), Hannah Schmidbaur (University of Vienna, Austria), Thomas Hummel (University of Vienna, Austria) for many insightful comments and reading of the draft manuscript. The authors would like to apologize to all colleagues whose work has been omitted due to space constraints.
    Keywords: Cephalopod ; Gene duplication ; Genome rearrangement ; Novel gene ; Organismal innovation
    Repository Name: Woods Hole Open Access Server
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  • 27
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Arenas Gómez, Claudia M., Sabin, K. Z., & Echeverri, K. Wound healing across the animal kingdom: Crosstalk between the immune system and the extracellular matrix. Developmental Dynamics, (2020): 1-13, doi:10.1002/dvdy.178.
    Description: Tissue regeneration is widespread in the animal kingdom. To date, key roles for different molecular and cellular programs in regeneration have been described, but the ultimate blueprint for this talent remains elusive. In animals capable of tissue regeneration, one of the most crucial stages is wound healing, whose main goal is to close the wound and prevent infection. In this stage, it is necessary to avoid scar formation to facilitate the activation of the immune system and remodeling of the extracellular matrix, key factors in promoting tissue regeneration. In this review, we will discuss the current state of knowledge regarding the role of the immune system and the interplay with the extracellular matrix to trigger a regenerative response.
    Description: The research in the Echeverri lab is supported NIH NCID R01 to Karen Echeverri and start‐up funds from the MBL. Keith Z. Sabin has been supported by an NIH T32 GM113846 grant.
    Keywords: Extracellular matrix ; Immune system ; Regeneration ; Wound healing
    Repository Name: Woods Hole Open Access Server
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  • 28
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hirst, W. G., Biswas, A., Mahalingan, K. K., & Reber, S. Differences in intrinsic tubulin dynamic properties contribute to spindle length control in Xenopus species. Current Biology, 30(11), (2020): 2184-2190.e5, doi: 10.1016/j.cub.2020.03.067.
    Description: The function of cellular organelles relates not only to their molecular composition but also to their size. However, how the size of dynamic mesoscale structures is established and maintained remains poorly understood [1, 2, 3]. Mitotic spindle length, for example, varies several-fold among cell types and among different organisms [4]. Although most studies on spindle size control focus on changes in proteins that regulate microtubule dynamics [5, 6, 7, 8], the contribution of the spindle’s main building block, the αβ-tubulin heterodimer, has yet to be studied. Apart from microtubule-associated proteins and motors, two factors have been shown to contribute to the heterogeneity of microtubule dynamics: tubulin isoform composition [9, 10] and post-translational modifications [11]. In the past, studying the contribution of tubulin and microtubules to spindle assembly has been limited by the fact that physiologically relevant tubulins were not available. Here, we show that tubulins purified from two closely related frogs, Xenopus laevis and Xenopus tropicalis, have surprisingly different microtubule dynamics in vitro. X. laevis microtubules combine very fast growth and infrequent catastrophes. In contrast, X. tropicalis microtubules grow slower and catastrophe more frequently. We show that spindle length and microtubule mass can be controlled by titrating the ratios of the tubulins from the two frog species. Furthermore, we combine our in vitro reconstitution assay and egg extract experiments with computational modeling to show that differences in intrinsic properties of different tubulins contribute to the control of microtubule mass and therefore set steady-state spindle length.
    Description: This article was prompted by our stay at the Marine Biological Laboratory (MBL), Woods Hole, MA in the summer of 2016 funded by the Princeton-Humboldt Strategic Partnership Grant together with the lab of Sabine Petry (Princeton University). We thank Jeff Woodruff (UT Southwestern), David Drechsel (IMP), and Marcus J. Taylor (MPI IB) for constructive criticism and comments on the manuscript and Helena Jambor for constructive comments on figure design. We thank the AMBIO imaging facility (Charité, Berlin) and Nikon at MBL for imaging support, Aliona Bogdanova and Barbara Borgonovo (MPI CBG) for their help with protein purification, and Francois Nedelec (University of Cambridge) for help with Cytosim. We are grateful to the Görlich lab (MPI BPC), in particular Bastian Hülsmann and Jens Krull, and the NXR for supply with X. tropicalis frogs. We thank Antonina Roll-Mecak (National Institute of Neurological Disorders and Stroke) for help with mass spectrometry analysis and discussions and Duck-Yeon Lee in the Biochemistry Core (National Heart, Lung and Blood Institute) for access to mass spectrometers. For mass spectrometry, we would like to acknowledge the assistance of Benno Kuropka and Chris Weise from the Core Facility BioSupraMol supported by the Deutsche Forschungsgemeinschaft (DFG). We thank all former and current members of the Reber lab for discussion and helpful advice, in particular, Christoph Hentschel and Soma Zsoter for technical assistance and Sebastian Reusch for help with tubulin purification. S.R. acknowledges funding from the IRI Life Sciences (Humboldt-Universität zu Berlin, Excellence Initiative/DFG). W.G.H. was supported by the Alliance Berlin Canberra co-funded by a grant from the Deutsche Forschungsgemeinschaft (DFG) for the International Research Training Group (IRTG) 2290 and the Australian National University. K.K.M. was supported by funds in the Roll-Mecak lab, intramural program of the National Institute of Neurological Disorders and Stroke.
    Keywords: Spindle scaling ; Tubulin ; Microtubule dynamics ; Xenopus ; Spindle length
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  • 29
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tassia, M. G., David, K. T., Townsend, J. P., & Halanych, K. M. TIAMMAt: leveraging biodiversity to revise protein domain models, evidence from innate immunity. Molecular Biology and Evolution, 38(12), (2021): 5806–5818, https://doi.org/10.1093/molbev/msab258.
    Description: Sequence annotation is fundamental for studying the evolution of protein families, particularly when working with nonmodel species. Given the rapid, ever-increasing number of species receiving high-quality genome sequencing, accurate domain modeling that is representative of species diversity is crucial for understanding protein family sequence evolution and their inferred function(s). Here, we describe a bioinformatic tool called Taxon-Informed Adjustment of Markov Model Attributes (TIAMMAt) which revises domain profile hidden Markov models (HMMs) by incorporating homologous domain sequences from underrepresented and nonmodel species. Using innate immunity pathways as a case study, we show that revising profile HMM parameters to directly account for variation in homologs among underrepresented species provides valuable insight into the evolution of protein families. Following adjustment by TIAMMAt, domain profile HMMs exhibit changes in their per-site amino acid state emission probabilities and insertion/deletion probabilities while maintaining the overall structure of the consensus sequence. Our results show that domain revision can heavily impact evolutionary interpretations for some families (i.e., NLR’s NACHT domain), whereas impact on other domains (e.g., rel homology domain and interferon regulatory factor domains) is minimal due to high levels of sequence conservation across the sampled phylogenetic depth (i.e., Metazoa). Importantly, TIAMMAt revises target domain models to reflect homologous sequence variation using the taxonomic distribution under consideration by the user. TIAMMAt’s flexibility to revise any subset of the Pfam database using a user-defined taxonomic pool will make it a valuable tool for future protein evolution studies, particularly when incorporating (or focusing) on nonmodel species.
    Description: This work was supported by The National Science Foundation (Grant No. IOS—1755377 to K.M.H., Rita Graze, and Elizabeth Hiltbold Schwartz), and K.T.D. was supported by The National Science Foundation’s Graduate Research Fellowship Program.
    Keywords: Protein evolution ; Domain annotation ; Animal evolution ; Innate immunity
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  • 30
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Molines, A. T., Lemière, J., Gazzola, M., Steinmark, I. E., Edrington, C. H., Hsu, C.-T., Real-Calderon, P., Suhling, K., Goshima, G., Holt, L. J., Thery, M., Brouhard, G. J., & Chang, F. Physical properties of the cytoplasm modulate the rates of microtubule polymerization and depolymerization. Developmental Cell, 57(4), (2022): 466-479.e6, https://doi.org/10.1016/j.devcel.2022.02.001.
    Description: The cytoplasm is a crowded, visco-elastic environment whose physical properties change according to physiological or developmental states. How the physical properties of the cytoplasm impact cellular functions in vivo remains poorly understood. Here, we probe the effects of cytoplasmic concentration on microtubules by applying osmotic shifts to fission yeast, moss, and mammalian cells. We show that the rates of both microtubule polymerization and depolymerization scale linearly and inversely with cytoplasmic concentration; an increase in cytoplasmic concentration decreases the rates of microtubule polymerization and depolymerization proportionally, whereas a decrease in cytoplasmic concentration leads to the opposite. Numerous lines of evidence indicate that these effects are due to changes in cytoplasmic viscosity rather than cellular stress responses or macromolecular crowding per se. We reconstituted these effects on microtubules in vitro by tuning viscosity. Our findings indicate that, even in normal conditions, the viscosity of the cytoplasm modulates the reactions that underlie microtubule dynamic behaviors.
    Description: This work was supported by grants to F.C. (NIH GM115185, NIH GM056836, NIH GM146438), to L.J.H. (American Cancer Society RSG-19-073-01-TBE, Pershing Square Sohn Cancer Award, Chan Zuckerberg Initiative, NIH GM132447 and NIH CA240765), to G.G. (JSPS KAKENHI 17H06471 and 18KK0202), to K.S. (UK’s Biotechnology and Biological Sciences Research Council (BBSRC) grant BB/R004803/1) and to M.T. (ERC Consolidator Grant 771599). I.E.S. was supported by King’s College London through a LIDo (London Interdisciplinary Doctoral programme) iCASE studentship.
    Keywords: Cytoskeleton dynamics ; Microtubules ; Cytoplasm ; Crowding ; Viscosity ; Diffusion ; Density ; Rheology ; Mitosis ; Fission yeast Schizosaccharomyces pombe
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  • 31
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sanders‐DeMott, R., Eagle, M., Kroeger, K., Wang, F., Brooks, T., Suttles, J., Nick, S., Mann, A., & Tang, J. Impoundment increases methane emissions in Phragmites‐invaded coastal wetlands. Global Change Biology, 28(15), (2022): 4539– 4557. https://doi.org/10.1111/gcb.16217.
    Description: Saline tidal wetlands are important sites of carbon sequestration and produce negligible methane (CH4) emissions due to regular inundation with sulfate-rich seawater. Yet, widespread management of coastal hydrology has restricted tidal exchange in vast areas of coastal wetlands. These ecosystems often undergo impoundment and freshening, which in turn cause vegetation shifts like invasion by Phragmites, that affect ecosystem carbon balance. Understanding controls and scaling of carbon exchange in these understudied ecosystems is critical for informing climate consequences of blue carbon restoration and/or management interventions. Here, we (1) examine how carbon fluxes vary across a salinity gradient (4–25 psu) in impounded and natural, tidally unrestricted Phragmites wetlands using static chambers and (2) probe drivers of carbon fluxes within an impounded coastal wetland using eddy covariance at the Herring River in Wellfleet, MA, United States. Freshening across the salinity gradient led to a 50-fold increase in CH4 emissions, but effects on carbon dioxide (CO2) were less pronounced with uptake generally enhanced in the fresher, impounded sites. The impounded wetland experienced little variation in water-table depth or salinity during the growing season and was a strong CO2 sink of −352 g CO2-C m−2 year−1 offset by CH4 emission of 11.4 g CH4-C m−2 year−1. Growing season CH4 flux was driven primarily by temperature. Methane flux exhibited a diurnal cycle with a night-time minimum that was not reflected in opaque chamber measurements. Therefore, we suggest accounting for the diurnal cycle of CH4 in Phragmites, for example by applying a scaling factor developed here of ~0.6 to mid-day chamber measurements. Taken together, these results suggest that although freshened, impounded wetlands can be strong carbon sinks, enhanced CH4 emission with freshening reduces net radiative balance. Restoration of tidal flow to impounded ecosystems could limit CH4 production and enhance their climate regulating benefits.
    Description: This project was supported by USGS-NPS Natural Resources Preservation Program #2021-07, U.S. Geological Survey Coastal & Marine Hazards and Resources Program and the USGS Land Change Science Program's LandCarbon program, and NOAA National Estuarine Research Reserve Science Collaborative NA14NOS4190145. R Sanders-DeMott was supported by a USGS Mendenhall Fellowship and partnership with Restore America's Estuaries.
    Keywords: Blue carbon ; Coastal wetland ; Dike ; Eddy covariance ; Impoundment ; Methane ; Net ecosystem exchange ; Phragmites ; Restoration ; Static chambers
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  • 32
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shoshan, Y., Liscovitch-Brauer, N., Rosenthal, J. J. C., & Eisenberg, E. Adaptive proteome diversification by nonsynonymous A-to-I RNA editing in coleoid cephalopods. Molecular Biology and Evolution, 38(9), (2021): 3775–3788, https://doi.org/10.1093/molbev/msab154.
    Description: RNA editing by the ADAR enzymes converts selected adenosines into inosines, biological mimics for guanosines. By doing so, it alters protein-coding sequences, resulting in novel protein products that diversify the proteome beyond its genomic blueprint. Recoding is exceptionally abundant in the neural tissues of coleoid cephalopods (octopuses, squids, and cuttlefishes), with an over-representation of nonsynonymous edits suggesting positive selection. However, the extent to which proteome diversification by recoding provides an adaptive advantage is not known. It was recently suggested that the role of evolutionarily conserved edits is to compensate for harmful genomic substitutions, and that there is no added value in having an editable codon as compared with a restoration of the preferred genomic allele. Here, we show that this hypothesis fails to explain the evolutionary dynamics of recoding sites in coleoids. Instead, our results indicate that a large fraction of the shared, strongly recoded, sites in coleoids have been selected for proteome diversification, meaning that the fitness of an editable A is higher than an uneditable A or a genomically encoded G.
    Description: This research was supported by a grants from the United States–Israel Binational Science Foundation (BSF), Jerusalem, Israel (BSF2017262 to J.J.C.R. and E.E.), the Israel Science Foundation (3371/20 to E.E.) and the National Science Foundation (IOS 1827509 and 1557748 to J.J.C.R).
    Keywords: RNA editing ; Adaptation ; Evolution
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  • 33
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tsakalakis, I., Follows, M. J., Dutkiewicz, S., Follett, C. L., & Vallino, J. J. Diel light cycles affect phytoplankton competition in the global ocean. Global Ecology and Biogeography, 31(9), (2022): 1838-1849, https://doi.org/10.1111/geb.13562.
    Description: Aim Light, essential for photosynthesis, is present in two periodic cycles in nature: seasonal and diel. Although seasonality of light is typically resolved in ocean biogeochemical–ecosystem models because of its significance for seasonal succession and biogeography of phytoplankton, the diel light cycle is generally not resolved. The goal of this study is to demonstrate the impact of diel light cycles on phytoplankton competition and biogeography in the global ocean. Location Global ocean. Major taxa studied Phytoplankton. Methods We use a three-dimensional global ocean model and compare simulations of high temporal resolution with and without diel light cycles. The model simulates 15 phytoplankton types with different cell sizes, encompassing two broad ecological strategies: small cells with high nutrient affinity (gleaners) and larger cells with high maximal growth rate (opportunists). Both are grazed by zooplankton and limited by nitrogen, phosphorus and iron. Results Simulations show that diel cycles of light induce diel cycles in limiting nutrients in the global ocean. Diel nutrient cycles are associated with higher concentrations of limiting nutrients, by 100% at low latitudes (−40° to 40°), a process that increases the relative abundance of opportunists over gleaners. Size classes with the highest maximal growth rates from both gleaner and opportunist groups are favoured by diel light cycles. This mechanism weakens as latitude increases, because the effects of the seasonal cycle dominate over those of the diel cycle. Main conclusions Understanding the mechanisms that govern phytoplankton biogeography is crucial for predicting ocean ecosystem functioning and biogeochemical cycles. We show that the diel light cycle has a significant impact on phytoplankton competition and biogeography, indicating the need for understanding the role of diel processes in shaping macroecological patterns in the global ocean.
    Description: Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems supported M.J.F. and S.D. on CBIOMES grant #549931; C.L.F. on CBIOMES grants #827829 and #553242; and J.J.V. and I.T. on CBIOMES grant #549941. The National Science Foundation supported I.T. and J.J.V. on award #1558710 and J.J.V. on awards #1637630, #1655552 and #1841599.
    Keywords: Biogeography ; Diel light cycle ; Global ocean ; Modelling ; Nutrient cycles ; Phytoplankton ; Resource competition
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  • 34
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Munoz, S. E., Porter, T. J., Bakkelund, A., Nusbaumer, J., Dee, S. G., Hamilton, B., Giosan, L., & Tierney, J. E. Lipid biomarker record documents hydroclimatic variability of the Mississippi River Basin during the common era. Geophysical Research Letters, 47(12), (2020): e2020GL087237, doi:10.1029/2020GL087237.
    Description: Floods and droughts in the Mississippi River basin are perennial hazards that cause severe economic disruption. Here we develop and analyze a new lipid biomarker record from Horseshoe Lake (Illinois, USA) to evaluate the climatic conditions associated with hydroclimatic extremes that occurred in this region over the last 1,800 years. We present geochemical proxy evidence of temperature and moisture variability using branched glycerol dialkyl glycerol tetraethers (brGDGTs) and plant leaf wax hydrogen isotopic composition (δ2Hwax) and use isotope‐enabled coupled model simulations to diagnose the controls on these proxies. Our data show pronounced warming during the Medieval era (CE 1000–1,600) that corresponds to midcontinental megadroughts. Severe floods on the upper Mississippi River basin also occurred during the Medieval era and correspond to periods of enhanced warm‐season moisture. Our findings imply that projected increases in temperature and warm‐season precipitation could enhance both drought and flood hazards in this economically vital region.
    Description: This project was supported by grants to S. E. M and L. G. (NSF EAR‐1804107), T. J. P. (NSERC Discovery Grant), and S. G. D. (NOAA‐NA18OAR4310427).
    Keywords: Lipid biomarker ; Leaf wax ; BrGDGT ; Common Era ; Paleoclimate ; Hydroclimate
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  • 35
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marty, B., Almayrac, M., Barry, P. H., Bekaert, D., V., Broadley, M. W., Byrne, D. J., Ballentine, C. J., & Caracausi, A. An evaluation of the C/N ratio of the mantle from natural CO2-rich gas analysis: Geochemical and cosmochemical implications. Earth and Planetary Science Letters, 551, (2020): 116574, doi:10.1016/j.epsl.2020.116574.
    Description: The terrestrial carbon to nitrogen ratio is a key geochemical parameter that can provide information on the nature of Earth's precursors, accretion/differentiation processes of our planet, as well as on the volatile budget of Earth. In principle, this ratio can be determined from the analysis of volatile elements trapped in mantle-derived rocks like mid-ocean ridge basalts (MORB), corrected for fractional degassing during eruption. However, this correction is critical and previous attempts have adopted different approaches which led to contrasting C/N estimates for the bulk silicate Earth (BSE) (Marty and Zimmermann, 1999; Bergin et al., 2015). Here we consider the analysis of CO2-rich gases worldwide for which a mantle origin has been determined using noble gas isotopes in order to evaluate the C/N ratio of the mantle source regions. These gases experienced little fractionation due to degassing, as indicated by radiogenic 4He / 40Ar* values (where 4He and 40Ar* are produced by the decay of U+Th, and 40K isotopes, respectively) close to the mantle production/accumulation values. The C/N and C/3 He ratios of gases investigated here are within the range of values previously observed in oceanic basalts. They point to an elevated mantle C/N ratio (∼350-470, molar) higher than those of potential cosmochemical accretionary endmembers. For example, the BSE C/N and 36 Ar / N ratios (160-220 and 75 x 10-7, respectively) are higher than those of CM-CI chondrites but within the range of CV-CO groups. This similarity suggests that the Earth accreted from evolved planetary precursors depleted in volatile and moderately volatile elements. Hence the high C / N composition of the BSE may be an inherited feature rather than the result of terrestrial differentiation. The C / N and 36 Ar / N ratios of the surface (atmosphere plus crust) and of the mantle cannot be easily linked to any known chondritic composition. However, these compositions are consistent with early sequestration of carbon into the mantle (but not N and noble gases), permitting the establishment of clement temperatures at the surface of our planet.
    Description: M.A, D.V.B, M.W.B, D.J.B and B.M were supported by the European Research Council (PHOTONIS project, grant agreement No. 695618 to B.M.). Samples were collected as part of Study # YELL-08056 - Xenon anomalies in the Yellowstone Hotspot. We would like to thank Annie Carlson and all of the rangers at the Yellowstone National Park for providing invaluable advice and help when collecting the samples. This work was partially supported by a grant (G-2016-7206) from the Alfred P. Sloan Foundation and the Deep Carbon Observatory to P.H.B as well as NSF award 2015789 to P.H.B.. Sampling at Mt. Etna and gas analysis was supported by Instituto Nazionale di Geofisica e Vulcanologia Palermo. Fruitful discussions with Marc Hirschmann helped us to shape the ideas presented in this work. We acknowledge detailed and insightful reviews by Sami Mikhail and an anonymous reviewer, and efficient editing by Frederic Moynier. This is CRPG contribution 2741.
    Keywords: Carbon ; Nitrogen ; Earth ; Mantle ; Gases
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  • 36
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bowen, J. C., Ward, C. P., Kling, G. W., & Cory, R. M. Arctic amplification of global warming strengthened by sunlight oxidation of permafrost carbon to CO2. Geophysical Research Letters, 47(12), (2020): e2020GL087085, doi:10.1029/2020GL087085.
    Description: Once thawed, up to 15% of the ∼1,000 Pg of organic carbon (C) in arctic permafrost soils may be oxidized to carbon dioxide (CO2) by 2,100, amplifying climate change. However, predictions of this amplification strength ignore the oxidation of permafrost C to CO2 in surface waters (photomineralization). We characterized the wavelength dependence of permafrost dissolved organic carbon (DOC) photomineralization and demonstrate that iron catalyzes photomineralization of old DOC (4,000–6,300 a BP) derived from soil lignin and tannin. Rates of CO2 production from photomineralization of permafrost DOC are twofold higher than for modern DOC. Given that model predictions of future net loss of ecosystem C from thawing permafrost do not include the loss of CO2 to the atmosphere from DOC photomineralization, current predictions of an average of 208 Pg C loss by 2,299 may be too low by ~14%.
    Description: This research was supported by National Science Foundation (NSF) CAREER 1351745 (R.M.C.), DEB 1637459 and 1754835 (G.W.K.), the Camille and Henry Dreyfus Postdoctoral Program in Environmental Chemistry (R.M.C. and C.P.W.), the Frank and Lisina Hock Endowed Fund (C.P.W.), and the NOSAMS Graduate Student Internship Program (J.C.B.).
    Keywords: Photochemistry ; Permafrost ; Arctic ; Carbon cycling ; Dissolved organic carbon
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  • 37
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jin, D., Hoagland, P., & Ashton, A. D. Risk averse choices of managed beach widths under environmental uncertainty. Natural Resource Modeling, (2021): e12324, https://doi.org/10.1111/nrm.12324.
    Description: Applying a theoretical geo-economic approach, we examined key factors affecting decisions about the choice of beach width when eroded coastal beaches are being nourished (i.e., when fill is placed to widen a beach). Within this geo-economic framework, optimal beach width is positively related to its values for hazard protection and recreation and negatively related to nourishment costs and the discount rate. Using a dynamic modeling framework, we investigated the time paths of beach width and nourishment that maximized net present value under an accelerating sea level. We then analyzed how environmental uncertainty about expected future beach width, arising from natural shoreline dynamics, intermittent large storms, or sea-level rise, leads to economic choices favoring narrower beaches. Risk aversion can affect a coastal property owner's choice of beach width in contradictory ways: the expected benefits of hazard protection must be balanced against the expected costs of repeated nourishment actions.
    Description: Support for this study was provided by NSF Grant No. ARG 1518503, WHOI Sea Grant (NOAA Award Number: NA18OAR4170104), and the J. Seward Johnson Fund in Support of the Marine Policy Center.
    Keywords: Beach nourishment ; Beach width ; Coastal protection ; Risk management ; Shoreline change
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  • 38
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Farrell, U. C., Samawi, R., Anjanappa, S., Klykov, R., Adeboye, O. O., Agic, H., Ahm, A.-S. C., Boag, T. H., Bowyer, F., Brocks, J. J., Brunoir, T. N., Canfield, D. E., Chen, X., Cheng, M., Clarkson, M. O., Cole, D. B., Cordie, D. R., Crockford, P. W., Cui, H., Dahl, T. W., Mouro, L. D., Dewing, K., Dornbos, S. Q., Drabon, N., Dumoulin, J. A., Emmings, J. F., Endriga, C. R., Fraser, T. A., Gaines, R. R., Gaschnig, R. M., Gibson, T. M., Gilleaudeau, G. J., Gill, B. C., Goldberg, K., Guilbaud, R., Halverson, G. P., Hammarlund, E. U., Hantsoo, K. G., Henderson, M. A., Hodgskiss, M. S. W., Horner, Tristan J., Husson, J. M., Johnson, B., Kabanov, P., Brenhin K. C., Kimmig, J., Kipp, M. A., Knoll, A. H., Kreitsmann, T., Kunzmann, M., Kurzweil, F., LeRoy, M. A., Li, C., Lipp, A. G., Loydell, D. K., Lu, X., Macdonald, F. A., Magnall, J. M., Mänd, K., Mehra, A., Melchin, M. J., Miller, A. J., Mills, N. T., Mwinde, C. N., O'Connell, B., Och, L. M., Ossa Ossa, F., Pagès, A., Paiste, K., Partin, C. A., Peters, S. E., Petrov, P., Playter, T. L., Plaza-Torres, S., Porter, Susannah M., Poulton, S. W., Pruss, S. B., Richoz, S., Ritzer, S. R., Rooney, A. D., Sahoo, S. K., Schoepfer, S. D., Sclafani, J. A., Shen, Y., Shorttle, O., Slotznick, S. P., Smith, E. F., Spinks, S., Stockey, R. G., Strauss, J. V., Stüeken, E. E., Tecklenburg, S., Thomson, D., Tosca, N. J., Uhlein, G. J., Vizcaíno, M. N., Wang, H., White, T., Wilby, P. R., Woltz, C. R., Wood, R. A., Xiang, L., Yurchenko, I. A., Zhang, T., Planavsky, N. J., Lau, K. V., Johnston, D. T., Sperling, E. A., The Sedimentary Geochemistry and Paleoenvironments Project. Geobiology. 00, (2021): 1– 12,https://doi.org/10.1111/gbi.12462.
    Description: Geobiology explores how Earth's system has changed over the course of geologic history and how living organisms on this planet are impacted by or are indeed causing these changes. For decades, geologists, paleontologists, and geochemists have generated data to investigate these topics. Foundational efforts in sedimentary geochemistry utilized spreadsheets for data storage and analysis, suitable for several thousand samples, but not practical or scalable for larger, more complex datasets. As results have accumulated, researchers have increasingly gravitated toward larger compilations and statistical tools. New data frameworks have become necessary to handle larger sample sets and encourage more sophisticated or even standardized statistical analyses. In this paper, we describe the Sedimentary Geochemistry and Paleoenvironments Project (SGP; Figure 1), which is an open, community-oriented, database-driven research consortium. The goals of SGP are to (1) create a relational database tailored to the needs of the deep-time (millions to billions of years) sedimentary geochemical research community, including assembling and curating published and associated unpublished data; (2) create a website where data can be retrieved in a flexible way; and (3) build a collaborative consortium where researchers are incentivized to contribute data by giving them priority access and the opportunity to work on exciting questions in group papers. Finally, and more idealistically, the goal was to establish a culture of modern data management and data analysis in sedimentary geochemistry. Relative to many other fields, the main emphasis in our field has been on instrument measurement of sedimentary geochemical data rather than data analysis (compared with fields like ecology, for instance, where the post-experiment ANOVA (analysis of variance) is customary). Thus, the longer-term goal was to build a collaborative environment where geobiologists and geologists can work and learn together to assess changes in geochemical signatures through Earth history.
    Description: We thank the donors of The American Chemical Society Petroleum Research Fund for partial support of SGP website development (61017-ND2). EAS is funded by National Science Foundation grant (NSF) EAR-1922966. BGS authors (JE, PW) publish with permission of the Executive Director of the British Geological Survey, UKRI.
    Keywords: Consortium ; Database ; Earth history ; Geochemistry ; Website
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  • 39
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jonell, T., Giosan, L., Clift, P., Carter, A., Bretschneider, L., Hathorne, E., Barbarano, M., Garzanti, E., Vezzoli, G., & Naing, T. No modern Irrawaddy River until the late Miocene-Pliocene. Earth and Planetary Science Letters, 584, (2022): 117516, https://doi.org/10.1016/j.epsl.2022.117516.
    Description: The deposits of large Asian rivers with unique drainage geometries have attracted considerable attention due to their explanatory power concerning tectonism, surface uplift and upstream drainage evolution. This study presents the first petrographic, heavy mineral, Nd and Sr isotope geochemistry, and detrital zircon geochronology results from the Holocene Irrawaddy megadelta alongside modern and ancient sedimentary provenance datasets to assess the late Neogene evolution of the Irrawaddy River. Contrary to models advocating a steady post-middle Miocene river, we reveal an evolution of the Irrawaddy River more compatible with regional evidence for kinematic reorganization in Myanmar during late-stage India-Asia collision. Quaternary sediments are remarkably consistent in terms of provenance but highlight significant decoupling amongst fine and coarse fraction 87Sr/86Sr and due to hydraulic sorting. Only well after the late Miocene do petrographic, heavy mineral, isotope geochemistry, and detrital zircon U–Pb results from the trunk Irrawaddy and its tributaries achieve modern-day signatures. The primary driver giving rise to the geometry and provenance signature of the modern Irrawaddy River was regional late Miocene (≤10 Ma) basin inversion coupled with uplift and cumulative displacement along the Sagaing Fault. Middle to late Miocene provenance signatures cannot be reconciled with modern river geometries, and thus require significant loss of headwaters feeding the Chindwin subbasin after ∼14 Ma and the northern Shwebo subbasin after ∼11 Ma. Large-scale reworking after ∼7 Ma is evidenced by modern Irrawaddy River provenance, by entrenchment of the nascent drainage through Plio-Pleistocene inversion structures, and in the transfer of significant sediment volumes to the Andaman Sea.
    Description: TNJ was supported in initial stages of this project by a Postdoctoral Research Fellowship at UQ and software support by LSU. LG thanks support from the Andrew W. Mellon Foundation via Woods Hole Oceanographic Institution. The Charles T. McCord chair at LSU funded coring and detrital zircon U–Pb geochronology essential to the study.
    Keywords: Provenance ; Sediment ; Irrawaddy ; Zircon ; Isotope geochemistry ; Petrography
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  • 40
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huynh, A., Maktabi, B., Reddy, C. M., O'Neil, G. W., Chandler, M., & Baki, G. Evaluation of alkenones, a renewably sourced, plant-derived wax as a structuring agent for lipsticks. International Journal of Cosmetic Science, (2020), doi:10.1111/ics.12597.
    Description: OBJECTIVE Waxes are used as structuring agents in lipsticks. There are a variety of waxes combined in a single lipstick to provide good stability, pleasant texture and good pay‐off. Due to a significant growth for natural, green and sustainable products, there is a constant search for alternatives to animal‐derived and petroleum‐derived ingredients. In this study, a green, non‐animalderived wax, namely long‐chain ketones (referred to as alkenones), sourced from marine microalgae was formulated into lipsticks and evaluated as a structuring agent. METHODS Alkenones were used as a substitute for microcrystalline wax, ozokerite and candelilla wax, typical structuring agents. In total, 384 lipsticks were formulated: L1 (control, no alkenones), L2 (alkenones as a substitute for ozokerite), L3 (alkenones as a substitute for microcrystalline wax) and L4 (alkenones as a substitute for candelilla wax). Products were tested for hardness (bending force), stiffness, firmness (needle penetration), pay‐off (using a texture analyser and a consumer panel), friction, melting point and stability for 12 weeks at 25 and 45°C. RESULTS Alkenones influenced each characteristic evaluated. In general, lipsticks with alkenones (L2‐L4) became softer and easier to bend compared to the control (L1). In terms of firmness, lipsticks were similar to the control, except for L4, which was significantly (P 〈 0.05) firmer. The effect on pay‐off was not consistent. L2 and L3 had higher pay‐off to skin and fabric than L1. In addition, L4 had the lowest amount transferred, but it still had the highest colour intensity on skin. Alkenones influenced friction (glide) positively; the average friction decreased for L2‐L4. The lowest friction (i.e. best glide) was shown in L4. Melting point of the lipsticks was lower when alkenones were present. Overall, L4, containing 7% of 4 alkenones in combination with microcrystalline wax, ozokerite and carnauba wax, was found to have the most desirable attributes, including ease of bending, high level of firmness, low pay‐off in terms of amount, high colour intensity on skin and low friction (i.e. better glide). Consumers preferred L4 the most overall. CONCLUSION Results of this study indicate that alkenones offer a sustainable, non‐animal and non‐petroleum‐derived choice as a structuring agent for lipsticks.
    Description: The authors would like to thank Texture Technologies for the technical assistance provided during this project. This research was funded by the Washington Research Foundation and a private donor from friends of the Woods Hole Oceanographic Institution, grant number N‐127244.
    Keywords: Colour cosmetics ; Formulation/stability ; Statistics ; Alkenones ; Lipstick
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  • 41
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Patrick, S. C., Martin, J. G. A., Ummenhofer, C. C., Corbeau, A., & Weimerskirch, H. Albatrosses respond adaptively to climate variability by changing variance in a foraging trait. Global Change Biology, (2021), https://doi.org/10.1111/gcb.15735.
    Description: The ability of individuals and populations to adapt to a changing climate is a key determinant of population dynamics. While changes in mean behaviour are well studied, changes in trait variance have been largely ignored, despite being assumed to be crucial for adapting to a changing environment. As the ability to acquire resources is essential to both reproduction and survival, changes in behaviours that maximize resource acquisition should be under selection. Here, using foraging trip duration data collected over 7 years on black-browed albatrosses (Thalassarche melanophris) on the Kerguelen Islands in the southern Indian Ocean, we examined the importance of changes in the mean and variance in foraging behaviour, and the associated effects on fitness, in response to the El Niño Southern Oscillation (ENSO). Using double hierarchical models, we found no evidence that individuals change their mean foraging trip duration in response to a changing environment, but found strong evidence of changes in variance. Younger birds showed greater variability in foraging trip duration in poor conditions as did birds with higher fitness. However, during brooding, birds showed greater variability in foraging behaviour under good conditions, suggesting that optimal conditions allow the alteration between chick provisioning and self-maintenance trips. We found weak correlations between sea surface temperature and the ENSO, but stronger links with sea-level pressure. We suggest that variability in behavioural traits affecting resource acquisition is under selection and offers a mechanism by which individuals can adapt to a changing climate. Studies which look only at effects on mean behaviour may underestimate the effects of climate change and fail to consider variance in traits as a key evolutionary force.
    Description: The authors thank the Institut Polaire Français Paul Emile Victor (IPEV, programme 109 to HW) for providing financial and logistical support for the field work at Kerguelen, and to the Terres Australes et Antarctique Francaises (TAAF). The usage of the following data sets is gratefully acknowledged: SOI, NCEP/NCAR SLP and NOAA OISST v2, all provided by NOAA/OAR/ESRL PSD, Boulder, Colorado, USA, through https://www.esrl.noaa.gov/psd. CCU acknowledges support from the Joint Initiative Awards Fund from the Andrew W. Mellon Foundation and the James E. and Barbara V. Moltz Fellowship for Climate-Related Research.
    Keywords: Bet-hedging ; Intra-individual variability ; Resource acquisition ; Salt-water immersion logger ; Seabirds ; Southern Oscillation Index
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  • 42
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gu, S., Liu, Z., Oppo, D. W., Lynch-Stieglitz, J., Jahn, A., Zhang, J., Lindsay, K., & Wu, L. Remineralization dominating the δ13 C decrease in the mid-depth Atlantic during the last deglaciation. Earth and Planetary Science Letters, 571, (2021): 117106, https://doi.org/10.1016/j.epsl.2021.117106.
    Description: δ 13 C records from the mid-depth Atlantic show a pronounced decrease during the Heinrich Stadial 1 (HS1), a deglacial episode of dramatically weakened Atlantic Meridional Ocean Circulation (AMOC). Proposed explanations for this mid-depth decrease include a greater fraction of δ 13 C -depleted southern sourced water (SSW), a δ 13 C decrease in the North Atlantic Deep Water (NADW) end-member, and accumulation of the respired organic carbon. However, the relative importance of these proposed mechanisms cannot be quantitatively constrained from current available observations alone. Here we diagnose the individual contributions to the deglacial Atlantic mid-depth δ 13 C change from these mechanisms using a transient simulation with carbon isotopes and idealized tracers. We find that although the fraction of the low- δ 13 C SSW increases in response to a weaker AMOC during HS1, the water mass mixture change only plays a minor role in the mid-depth Atlantic δ 13 C decrease. Instead, increased remineralization due to the AMOC-induced mid-depth ocean ventilation decrease is the dominant cause. In this study, we differentiate between the deep end-members, which are assigned to deep water regions used in previous paleoceanography studies, and the surface end-members, which are from the near-surface water defined from the physical origin of deep water masses. We find that the deep NADW end-member includes additional remineralized material accumulated when sinking from the surface (surface NADW end-member). Therefore, the surface end-members should be used in diagnosing mechanisms of changes. Furthermore, our results suggest that remineralization in the surface end-member is more critical than the remineralization along the transport pathway from the near-surface formation region to the deep ocean, especially during the early deglaciation.
    Description: This work is supported by US National Science Foundation (NSF) P2C2 projects (1401778, 1401802, and 1566432), and the National Science Foundation of China No. 41630527. S.G. is supported by Shanghai Pujiang program.
    Keywords: δ13 C ; Water mass composition ; Remineralization ; End-member ; HS1
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  • 43
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tyne, R., Barry, P., Cheng, A., Hillegonds, D., Kim, J.-H., McIntosh, J., & Ballentine, C. Basin architecture controls on the chemical evolution and 4He distribution of groundwater in the Paradox Basin. Earth and Planetary Science Letters, 589, (2022):117580, https://doi.org/10.1016/j.epsl.2022.117580.
    Description: Fluids such as 4He, H2, CO2 and hydrocarbons accumulate within Earth's crust. Crustal reservoirs also have potential to store anthropogenic waste (e.g., CO2, spent nuclear fuel). Understanding fluid migration and how this is impacted by basin stratigraphy and evolution is key to exploiting fluid accumulations and identifying viable storage sites. Noble gases are powerful tracers of fluid migration and chemical evolution, as they are inert and only fractionate by physical processes. The distribution of 4He, in particular, is an important tool for understanding diffusion within basins and for groundwater dating. Here, we report noble gas isotope and abundance data from 36 wells across the Paradox Basin, Colorado Plateau, USA, which has abundant hydrocarbon, 4He and CO2 accumulations. Both groundwater and hydrocarbon samples were collected from 7 stratigraphic units, including within, above and below the Paradox Formation (P.Fm) evaporites. Air-corrected helium isotope ratios (0.0046 - 0.127 RA) are consistent with radiogenic overprinting of predominantly groundwater-derived noble gases. The highest radiogenic noble gas concentrations are found in formations below the P.Fm. Atmosphere-derived noble gas signatures are consistent with meteoric recharge and multi-phase interactions both above and below the P.Fm, with greater groundwater-gas interactions in the shallower formations. Vertical diffusion models, used to reconstruct observed groundwater helium concentrations, show the P.Fm evaporite layer to be effectively impermeable to helium diffusion and a regional barrier for mobile elements but, similar to other basins, a basement 4He flux is required to accumulate the 4He concentrations observed beneath the P.Fm. The verification that evaporites are regionally impermeable to diffusion, of even the most diffusive elements, is important for sub-salt helium and hydrogen exploration and storage, and a critical parameter in determining 4He-derived mean groundwater ages. This is critical to understanding the role of basin stratigraphy and deformation on fluid flow and gas accumulation.
    Description: This work was supported by a Natural Environment Research Council studentship to R.L. Tyne (Grant ref. NE/L002612/1). We gratefully acknowledge the William F. Keck Foundation for support of this research, and the National Science Foundation (NSF EAR #2120733). J.C. McIntosh and C.J. Ballentine are fellows of the CIFAR Earth4D Subsurface Science and Exploration Program. The authors would like to acknowledge the U.S. Bureau of Reclamation, Paradox Resources, Navajo Petroleum, US Oil and Gas INC, Anson Resources, Lantz Indergard (Lisbon Valley Mining Co.), Ambria Dell'Oro and Mohammad Marza for help with sampling.
    Keywords: Noble gases ; Helium ; Paradox Basin ; Crustal fluid dating ; Groundwater migration
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  • 44
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Broadley, M., Byrne, D., Ardoin, L., Almayrac, M., Bekaert, D., & Marty, B. High precision noble gas measurements of hydrothermal quartz reveal variable loss rate of Xe from the Archean atmosphere. Earth and Planetary Science Letters, 588, (2022): 117577, https://doi.org/10.1016/j.epsl.2022.117577.
    Description: Determining the composition of the Archean atmosphere and oceans is vital to understanding the environmental conditions that existed on the surface of the early Earth. The analysis of atmospheric remnants in fluid inclusions trapped in Archean-aged samples has shown that the Xe isotopic signature of the Archean atmosphere progressively evolved via mass-dependent fractionation, arriving at a modern atmospheric composition around the Archean-Proterozoic transition. The mechanisms driving this evolution are however not well constrained, and it is not yet clear whether the evolution proceeded continuously or via episodic bursts. Providing further constraints on the evolution of Xe in the Archean atmosphere is hampered by the limited amounts of atmospheric gas trapped within fluid inclusions during mineral formation, which impacts the precision at which the Archean atmosphere can be determined. Here, we develop a new crush-and-accumulate extraction technique that enables the heavy noble gases (Ar, Kr and Xe) released from crushing large quantities of hydrothermal quartz to be accumulated and analysed to a higher precision than was previously possible. Using this new technique, we re-evaluate the composition of atmospheric gases trapped within fluid inclusions of 3.3 Ga quartz samples from Barberton, South Africa. We find that the Xe isotopic signature is fractionated by +10.3 ± 1.0‰u−1 (2 SE) relative to modern atmosphere, which is within uncertainty of, but slightly lower than, the previous determination of 12.9 ± 2.4‰u−1 for this sample (Avice et al., 2017). We show for the first time that the Kr/Xe ratio measured within Archean quartz samples is enriched in Xe compared to the modern atmosphere, demonstrating that the atmosphere has lost Xe since the Archean. This further reinforces the proposal of atmospheric escape as the primary mechanism for Earth's Xe loss. We further show that the atmospheric Kr/Xe and Xe isotope fractionation recorded in the Barberton quartz at 3.3 Ga is incompatible with a model describing atmospheric loss at a continuous rate under a constant fractionation factor. This gives credence to numerical models of hydrodynamic escape, which suggest that Xe was lost from the Archean atmosphere in episodic bursts rather than at a constant rate. Refining the evolution curve of atmospheric Xe isotopes using the new technique presented here has the potential to shed light on discrete atmospheric events that punctuated the evolution of the Archean Earth and accompanied the evolution of life.
    Description: This study was supported by the European Research Council (PHOTONIS project, grant agreement No. 695618). This is CRPG contribution #2820.
    Keywords: Archean atmosphere ; Noble gases ; Xenon ; Atmospheric escape
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  • 45
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, W. M., Alexander, H., Bier, R. L., Miller, D. R., Muscarella, M. E., Pitz, K. J., & Smith, H. Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities? FEMS Microbiology Ecology, (2020): fiaa115, doi: 10.1093/femsec/fiaa115.
    Description: Auxotrophy, or an organism's requirement for an exogenous source of an organic molecule, is widespread throughout species and ecosystems. Auxotrophy can result in obligate interactions between organisms, influencing ecosystem structure and community composition. We explore how auxotrophy-induced interactions between aquatic microorganisms affect microbial community structure and stability. While some studies have documented auxotrophy in aquatic microorganisms, these studies are not widespread, and we therefore do not know the full extent of auxotrophic interactions in aquatic environments. Current theoretical and experimental work suggests that auxotrophy links microbial community members through a complex web of metabolic dependencies. We discuss the proposed ways in which auxotrophy may enhance or undermine the stability of aquatic microbial communities, highlighting areas where our limited understanding of these interactions prevents us from being able to predict the ecological implications of auxotrophy. Finally, we examine an example of auxotrophy in harmful algal blooms to place this often theoretical discussion in a field context where auxotrophy may have implications for the development and robustness of algal bloom communities. We seek to draw attention to the relationship between auxotrophy and community stability in an effort to encourage further field and theoretical work that explores the underlying principles of microbial interactions.
    Description: This work was supported by the National Science Foundation [OCE-1356192].
    Keywords: Auxotrophy ; Microbial community stability ; Microbial interactions ; Aquatic
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  • 46
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(15), (2020): e2020GL087266, doi:10.1029/2020GL087266.
    Description: Using a recently compiled global marine data set of dissolved helium isotopes and helium and neon concentrations, we make an estimate of the inventory of hydrothermal 3He in the Southern Ocean to be 4.9 ± 0.6 × 104 moles. Under the assumption that the bulk of the hydrothermally sourced 3He is upwelled there, we use recent estimates of the global hydrothermal 3He flux to determine an e‐folding residence time of 99 ± 18 years, depending on assumptions of water mass and upwelling boundaries. Our estimate is within the broad range of values obtained from recent Southern Ocean circulation models.
    Description: This work was funded under the auspices of the U.S. National Science Foundation's Grant OCE‐1756138.
    Description: 2021-02-04
    Keywords: Hydrothermal budgets ; Meridional overturning circulation ; Marine productivity ; Micronutrients ; Dissolved iron ; Southern Ocean upwelling
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  • 47
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Keller, A. G., Apprill, A., Lebaron, P., Robbins, J., Romano, T. A., Overton, E., Rong, Y., Yuan, R., Pollara, S., & Whalen, K. E. Characterizing the culturable surface microbiomes of diverse marine animals. FEMS Microbiology Ecology, 97(4), (2021): fiab040, https://doi.org/10.1093/femsec/fiab040.
    Description: Biofilm-forming bacteria have the potential to contribute to the health, physiology, behavior and ecology of the host and serve as its first line of defense against adverse conditions in the environment. While metabarcoding and metagenomic information furthers our understanding of microbiome composition, fewer studies use cultured samples to study the diverse interactions among the host and its microbiome, as cultured representatives are often lacking. This study examines the surface microbiomes cultured from three shallow-water coral species and two whale species. These unique marine animals place strong selective pressures on their microbial symbionts and contain members under similar environmental and anthropogenic stress. We developed an intense cultivation procedure, utilizing a suite of culture conditions targeting a rich assortment of biofilm-forming microorganisms. We identified 592 microbial isolates contained within 15 bacterial orders representing 50 bacterial genera, and two fungal species. Culturable bacteria from coral and whale samples paralleled taxonomic groups identified in culture-independent surveys, including 29% of all bacterial genera identified in the Megaptera novaeangliae skin microbiome through culture-independent methods. This microbial repository provides raw material and biological input for more nuanced studies which can explore how members of the microbiome both shape their micro-niche and impact host fitness.
    Description: Funding was provided by the National Science Foundation (Biological Oceanography) award #1657808 and National Institutes of Health grants 1R21-AI119311–01 to K. E. Whalen, as well as funding from the Koshland Integrated Natural Science Center and Green Fund at Haverford College. This constitutes scientific manuscript #298 from the Sea Research Foundation.
    Keywords: Bacteria ; SSU rRNA ; Coral ; Whale ; Microbiome ; Skin
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  • 48
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schwestermann, T., Eglinton, T., I., Haghipour, N., McNichol, A. P., Ikehara, K., & Strasser, M. Event-dominated transport, provenance, and burial of organic carbon in the Japan Trench. Earth and Planetary Science Letters, 563, (2021): 116870, https://doi.org/10.1016/j.epsl.2021.116870.
    Description: The delivery of organic carbon (OC) to the ocean's deepest trenches in the hadal zone is poorly understood, but may be important for the carbon cycle, contain crucial information on sediment provenance and event-related transport processes, and provide age constraints on stratigraphic sequences in this terminal sink. In this study, we systematically characterize bulk organic matter (OM) and OC signatures (TOC/TN, C, 14C), as well as those from application of serial thermal oxidation (ramped pyrolysis/oxidation) of sediment cores recovered along an entire hadal trench encompassing high stratigraphic resolution records spanning nearly 2000 years of deposition. We analyze two cores from the southern and northern Japan Trench, where submarine canyon systems link shelf with trench. We compare results with previously published data from the central Japan Trench, where canyon systems are absent. Our analyses enable refined dating of the stratigraphic record and indicate that event deposits arise from remobilization of relatively surficial sediment coupled with deeper erosion along turbidity current pathways in the southern and central study site and from canyon flushing events in the northern study site. Furthermore, our findings indicate deposition of predominantly marine OC within hemipelagic background sediment as well as associated with event deposits along the entire trench axis. This implies that canyon systems flanking the Japan Trench do not serve as a short-circuit for injection of terrestrial OC to the hadal zone, and that tropical cyclones are not major agents for sediment and carbon transfer into this trench system. These findings further support previous Japan Trench studies interpreting that event deposits originate from the landward trench slope and are earthquake-triggered. The very low terrestrial OC input into the Japan Trench can be explained by the significant distance between trench and hinterland (〉180 km), and the physiography of the canyons that do not connect to coast and river systems. We suggest that detailed analyzes of long sedimentary records are essential to understand OC transfer, deposition and burial in hadal trenches.
    Description: The cruise was supported by the German Bundesministerium für Bildung und Forschung (BMBF 03G0251A) and the Deutsche Forschungsgemeinschaft. We acknowledge the Kochi core repository for additional surface samples of Japanese Cruises. Al Gagnon and Mary Lardie are thanked for their great help and technical assistance with the RPO instrument at NOSAMS. APM and the NOSAMS work were supported by the National Science Foundation Cooperative Agreement OCE-1239667. We appreciate the assistance from members of the Laboratory of Ion Beam Physics for the AMS measurements. Rui Bao is acknowledged for helpful discussions. A special thank you goes to Madalina Jaggi for her technical assistance for the C analysis of rinsed samples. This study was supported by the Austrian Science Fund (FWF P29678-N28) and a postgraduate grant by the International Association of Sedimentologists (IAS). We also acknowledge constructive support by the two reviewers (Jordon Hemingway and an anonymous). The authors declare no conflict of interests. The bathymetric data used in figure 1 is available at JAMSTEC-DARWIN database (http://www.godac.jamstec.go.jp/darwin/e) and Bundesamt für Seeschifffahrt und Hydrographie (https://www.bsh.de/DE/DATEN/Ozeanographisches_Datenzentrum/Vermessungsdaten/Nordpazifischer_Ozean/nordpazifik_node.html). Data of carbon analyses are displayed in the supporting information and also available from the corresponding author on reasonable request.
    Keywords: Carbon isotopes ; Carbon provenance ; Hadal zone event-stratigraphy ; Carbon transfer ; Japan Trench ; Ramped Pyr/Ox
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  • 49
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ryan, S., Hellmer, H. H., Janout, M., Darelius, E., Vignes, L., & Schroeder, M. Exceptionally warm and prolonged flow of warm deep water toward the Filchner-Ronne Ice Shelf in 2017. Geophysical Research Letters, 47(13),(2020): e2020GL088119, doi:10.1029/2020GL088119.
    Description: The Filchner‐Ronne Ice Shelf, fringing the southern Weddell Sea, is Antarctica's second largest ice shelf. At present, basal melt rates are low due to active dense water formation; however, model projections suggest a drastic increase in the future due to enhanced inflow of open‐ocean warm water. Mooring observations from 2014 to 2016 along the eastern flank of the Filchner Trough (76°S) revealed a distinct seasonal cycle with inflow if Warm Deep Water during summer and autumn. Here we present extended time series showing an exceptionally warm and long inflow in 2017, with maximum temperatures exceeding 0.5°C. Warm temperatures persisted throughout winter, associated with a fresh anomaly, which lead to a change in stratification over the shelf, favoring an earlier inflow in the following summer. We suggest that the fresh anomaly developed upstream after anomalous summer sea ice melting and contributed to a shoaling of the shelf break thermocline.
    Description: The authors would like to express their gratitude to the officers and crews of RV Polarstern (cruises PS92 [Grant AWI_PS82_02], PS96 [Grant AWI_PS96_01], and PS111 [Grant AWI_PS111_01]), RRS Ernest Shackleton (Cruise ES060), and RSS James Clark Ross (Cruise JR16004) for their efficient assistance. E. D. received funding from the project TOBACO (267660), POLARPROG, Norges Forskningsrd.
    Keywords: Ocean-ice shelf interaction ; Weddell Sea ; Warm inflow ; Antarctic Slope Front ; Filchner-Ronne Ice Shelf
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  • 50
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gu, S., Liu, Z., Oppo, D. W., Lynch-Stieglitz, J., Jahn, A., Zhang, J., & Wu, L. Assessing the potential capability of reconstructing glacial Atlantic water masses and AMOC using multiple proxies in CESM. Earth and Planetary Science Letters, 541, (2020): 11629, doi:10.1016/j.epsl.2020.116294.
    Description: Reconstructing the Atlantic Meridional Overturning Circulation (AMOC) during the Last Glacial Maximum (LGM) is essential for understanding glacial-interglacial climate change and the carbon cycle. However, despite many previous studies, uncertainties remain regarding the glacial water mass distributions in the Atlantic and the AMOC intensity. Here we use an isotope enabled ocean model with multiple geotracers (δ 13 C,E Νd,231 Pa/ 230Th,δ 18 Ο and Δ 14 C) and idealized water tracers to study the potential constraints on LGM ocean circulation from multiple proxies. Our model suggests that the glacial Atlantic water mass distribution can be accurately constrained by the air-sea gas exchange signature of water masses (δ13 C AS), but E Nd might overestimate the North Atlantic Deep Water (NADW) percentage in the deep Atlantic probably because of the boundary source of Nd. A sensitivity experiment with an AMOC of similar geometry but much weaker strength suggests that the correct AMOC geometry is more important than the AMOC strength for simulating the observed glacial δ13 C AS and E Nd and distributions. The kinematic tracer 231Pa/230Th is sensitive to AMOC intensity, but the interpretation might be complicated by the AMOC geometry and AABW transport changes during the LGM. δ 18 Ο in the benthic foraminifera (δ 18 Οc) from the Florida Straits provides a consistent measure of the upper ocean boundary current in the model, which potentially provides an unambiguous method to reconstruct glacial AMOC intensity. Finally, we propose that the moderate difference between AMOC intensity at LGM and PD, if any, is caused by the competition of the responses to CO2 forcing and continental ice sheet forcing.
    Description: We thank two anonymous reviewers for their useful and constructive comments. We also thank Editor Dr Laura F. Robinson for handling the manuscript. This work is supported by National Science Foundation of China No. 41630527, US National Science Foundation (NSF) P2C2 projects (1401778, 1401802, and 1566432). We would like to acknowledge the high-performance computing support from Yellowstone (ark:/85065/d7wd3xhc) and Cheyenne (doi:10.5065/D6RX99HX) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the National Science Foundation and from Center for High Performance Computing and System Simulation, Pilot National Laboratory for Marine Science and Technology (Qingdao). Data used to produce the results in this study can be obtained from HPSS at CISL: /home/sgu28/CTRACE_decadal or by contacting the authors.
    Keywords: Last Glacial Maximum ; AMOC ; Water mass ; Multi-proxy
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  • 51
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wang, P., Huang, C., Lin, J., Jian, Z., Sun, Z., & Zhao, M. The South China Sea is not a mini-Atlantic: plate-edge rifting vs intra-plate rifting. National Science Review, 6(5), (2019): 902-913, doi:10.1093/nsr/nwz135.
    Description: The South China Sea, as ‘a non-volcanic passive margin basin’ in the Pacific, has often been considered as a small-scale analogue of the Atlantic. The recent ocean drilling in the northern South China Sea margin found, however, that the Iberian model of non-volcanic rifted margin from the Atlantic does not apply to the South China Sea. In this paper, we review a variety of rifted basins and propose to discriminate two types of rifting basins: plate-edge type such as the South China Sea and intra-plate type like the Atlantic. They not only differ from each other in structure, formation process, lifespan and geographic size, but also occur at different stages of the Wilson cycle. The intra-plate rifting occurred in the Mesozoic and gave rise to large oceans, whereas the plate-edge rifting took place mainly in the mid-Cenozoic, with three-quarters of the basins concentrated in the Western Pacific. As a member of the Western Pacific system of marginal seas, the South China Sea should be studied not in isolation on its origin and evolution, but in a systematic context to include also its neighboring counterparts.
    Description: This work was supported by the National Natural Science Foundation of China as a part of the ‘South China Sea Deep’ Project (91128000).
    Keywords: Rifting ; Marginal basin ; Passive margin ; South China Sea ; Western Pacific ; Subduction
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  • 52
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Elling, F. J., Hemingway, J. D., Kharbush, J. J., Becker, K. W., Polik, C. A., & Pearson, A. Linking diatom-diazotroph symbioses to nitrogen cycle perturbations and deep-water anoxia: insights from Mediterranean sapropel events. Earth and Planetary Science Letters, 571, (2021): 117110, https://doi.org/10.1016/j.epsl.2021.117110.
    Description: Elevated organic matter (OM) export flux promotes marine anoxia, thus increasing carbon sequestration efficiency and decreasing atmospheric carbon dioxide levels. However, the mechanisms that trigger and sustain anoxic events—particularly those associated with nutrient-poor, oligotrophic surface waters—remain poorly constrained. Mediterranean Sea sapropels are well-preserved sediments deposited during episodic anoxic events throughout the Plio-Pleistocene; as such, they may provide unique insight into the biogeochemical and ecological drivers of—and responses to—marine anoxia. Using biomarker distributions, we demonstrate that anaerobic ammonium oxidizing (anammox) bacteria and diazotrophic endosymbionts of mat- and/or raft-forming diatoms were both abundant during sapropel events, particularly in the Ionian and Libyan seas. In these sapropels, the carbon isotope compositions of anammox biomarkers directly capture progressive 13C-depletion in deep-water dissolved inorganic carbon, indicating sustained carbon sequestration. To explain these observations, we propose a reinforcing feedback whereby initial nutrient and/or circulation perturbations promote fixed nitrogen loss via intensified anammox and heterotrophic denitrification, which in turn favors proliferation of rapidly sinking diatom-diazotroph symbiotic consortia, increases OM burial flux, and sustains anoxia. This mechanism resolves the long-standing conundrum that small and buoyant diazotrophs are apparently associated with high OM export during periods of marine anoxia and oligotrophy.
    Description: This work was funded through the Gordon and Betty Moore Foundation and US National Science Foundation grants 1843285, 1702262 and 1349126 (to A.P.). Additional financial support was provided by the Postdoctoral Program at the Woods Hole Oceanographic Institution and U.S. Geological Survey (K.W.B.).
    Keywords: Nammox ; Anoxia ; Compound-specific, δ13, C ; Diatom-diazotroph symbioses ; N2-fixation ; Mediterranean sapropels
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  • 53
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhang, F., Lin, J., Zhou, Z., Yang, H., & Morgan, J. P. Mechanism of progressive broad deformation from oceanic transform valley to off-transform faulting and rifting. Innovation, 3(1), (2022): 100193, https://doi.org/10.1016/j.xinn.2021.100193.
    Description: Oceanic transform faults (TFs) are commonly viewed as single, narrow strike-slip seismic faults that offset two mid-ocean ridge segments. However, broad zones of complex deformation are ubiquitous at TFs. Here, we propose a new conceptual model for the progressive deformation within broad zones at oceanic TFs through detailed morphological, seismic, and stress analyses. We argue that, under across-transform extension due to a change in plate motion, plate deformation occurs first along high-angle transtensional faults (TTFs) within the transform valleys. Off-transform normal faults (ONFs) form when across-transform deviatoric extensional stresses exceed the yield strength of the adjacent oceanic lithosphere. With further extension, these normal faults can develop into off-transform rift zones (ORZs), some of which can further develop into transform plate boundaries. We illustrate that such progressive complex deformation is an inherent feature of oceanic TFs. The new conceptual model provides a unifying theory to explain the observed broad deformation at global transform systems.
    Description: We benefited from discussions with Drs. Tao Zhang, Huihui Weng, Yen Joe Tan, the SCSIO Deep Ocean Geodynamics Group, the CUHK Seismology Group, and the participants of the InterRidge transform fault workshop in France, 2018. This work was supported by the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (GML2019ZD0205), NSFC grants (41976064, 41890813, 41976066, 91628301, and 91858207), CAS grants (Y4SL021001, QYZDY-SSW-DQC005, 133244KYSB20180029, 131551KYSB20200021, and ISEE2021PY03), National Key R&D Program of China grants (2018YFC0309800 and 2018YFC0310105), the Guangdong Basic and Applied Basic Research Foundation (2021A1515012227), and Hong Kong Research Grant Council grants (14304820 and 14306119).
    Keywords: Transform fault deformation ; Off-transform faulting and rifting ; Plate rotation ; Transtensional fault ; Ridge-transform interaction
    Repository Name: Woods Hole Open Access Server
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  • 54
    Publication Date: 2022-10-24
    Description: The Earth is a dynamic planet, where earthquakes and volcanoes are among some of its most outstanding expressions. Just like our planet as a whole is subject to lunisolar gravitational tides, seismic and volcanic activity are also influenced by the relative motion of the Sun and Moon. This tidal influence takes different forms, spanning different spatial and temporal scales, from quasiperiodic patterns with semidiurnal to multiannual periods to the triggering of earthquakes and volcanic eruptions. Tidal stresses have been primarily evoked as driving forces, although they are 3–5 orders of magnitude smaller than tectonic stresses, which makes cause-effect relationships elusive. This chapter reviews the different observations of tidal influence in geophysical and geochemical data acquired in tectonic and volcanic settings, as well as the methods that have been developed to detect it. Using case studies, we provide some insights on the sensitivity of geological systems to tidal stresses.
    Description: Published
    Description: 333-364
    Description: 4V. Processi pre-eruttivi
    Keywords: Volcanic activity ; Seismic activity ; Solid Earth and ocean tides ; External forcing ; Tidal triggering ; 04. Solid Earth
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 55
    Publication Date: 2022-10-24
    Description: Scintillations are caused by ionospheric irregularities and can affect the propagation of trans-ionospheric radio signals. One way to understand and predict the impact of such irregularities on Global Navigation Satellite System (GNSS) signals is through the spatial/temporal characterization of the scintillation’s climatology during different phases of a solar cycle covering different latitudes and longitudes. This characterization is performed using amplitude scintillation index S4, during the full solar cycle 24, in the South American (SA) sector. The investigation considers the diurnal, daily, and seasonal variation of S4 index for climatological purpose, and the goal of this study is to investigate the scintillations covering a large spatial scale during the full solar cycle 24. The characterization shows a latitudinal asymmetry, whereas at the south, the scintillations were more frequent and their peak was more distant from the magnetic equator, which can be attributed by the South Atlantic Magnetic Anomaly (SAMA), and/or by the transequatorial meridional neutral winds. It also shows a longitudinal asymmetry, where the scintillations at the eastern sector occurred between November and February, while at the western sector, they occurred during the months of October, November, February and March, which can be attributed to the difference between the magnetic and geographic equators. The occurrence of scintillations during two distinct geomagnetic storms with similar storm time in the SA sector is also presented.
    Description: Published
    Description: 105872
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 56
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    Wiley
    In:  EPIC3Earth Surface Processes and Landforms, Wiley, ISSN: 0197-9337
    Publication Date: 2022-10-21
    Description: Thaw slumps in ice‐rich permafrost can retreat tens of metres per summer, driven by the melt of subaerially exposed ground ice. However, some slumps retain an ice‐veneering debris cover as they retreat. A quantitative understanding of the thermal regime and geomorphic evolution of debris‐covered slumps in a warming climate is largely lacking. To characterize the thermal regime, we instrumented four debris‐covered slumps in the Canadian Low Arctic and developed a numerical conduction‐based model. The observed surface temperatures 20°C and steep thermal gradients indicate that debris insulates the ice by shifting the energy balance towards radiative and turbulent losses. After the model was calibrated and validated with field observations, it predicted sub‐debris ice melt to decrease four‐fold from 1.9 to 0.5 m as the thickness of the fine‐grained debris quadruples from 0.1 to 0.4 m. With warming temperatures, melt is predicted to increase most rapidly, in relative terms, for thick (~0.5‐1.0 m) debris covers. The morphology and evolution of the debris‐covered slumps were characterized using field and remote sensing observations, which revealed differences in association with morphology and debris composition. Two low‐angle slumps retreated continually despite their persistent fine‐grained debris covers. The observed elevation losses decreased from ~1.0 m/yr where debris thickness ~.2 m to 0.1 m/yr where thickness ~1.0 m. Conversely, a steep slump with a coarse‐grained debris veneer underwent short‐lived bursts of retreat, hinting at a complex interplay of positive and negative feedback processes. The insulative protection and behaviour of debris vary significantly with factors such as thickness, grain size and climate: debris thus exerts a fundamental, spatially variable influence on slump trajectories in a warming climate.
    Repository Name: EPIC Alfred Wegener Institut
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  • 57
    Publication Date: 2022-10-21
    Description: This paper investigates different methods for quantifying thaw subsidence using terrestrial laser scanning (TLS) point clouds. Thaw subsidence is a slow (millimetre to centimetre per year) vertical displacement of the ground surface common in ice‐rich permafrost‐underlain landscapes. It is difficult to quantify thaw subsidence in tundra areas as they often lack stable reference frames. Also, there is no solid ground surface to serve as a basis for elevation measurements, due to a continuous moss–lichen cover. We investigate how an expert‐driven method improves the accuracy of benchmark measurements at discrete locations within two sites using multitemporal TLS data of a 1‐year period. Our method aggregates multiple experts’ determination of the ground surface in 3D point clouds, collected in a web‐based tool. We then compare this to the performance of a fully automated ground surface determination method. Lastly, we quantify ground surface displacement by directly computing multitemporal point cloud distances, thereby extending thaw subsidence observation to an area‐based assessment. Using the expert‐driven quantification as reference, we validate the other methods, including in‐situ benchmark measurements from a conventional field survey. This study demonstrates that quantifying the ground surface using 3D point clouds is more accurate than the field survey method. The expert‐driven method achieves an accuracy of 0.1 ± 0.1 cm. Compared to this, in‐situ benchmark measurements by single surveyors yield an accuracy of 0.4 ± 1.5 cm. This difference between the two methods is important, considering an observed displacement of 1.4 cm at the sites. Thaw subsidence quantification with the fully automatic benchmark‐based method achieves an accuracy of 0.2 ± 0.5 cm and direct point cloud distance computation an accuracy of 0.2 ± 0.9 cm. The range in accuracy is largely influenced by properties of vegetation structure at locations within the sites. The developed methods enable a link of automated quantification and expert judgement for transparent long‐term monitoring of permafrost subsidence.
    Repository Name: EPIC Alfred Wegener Institut
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  • 58
    Publication Date: 2022-10-20
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Umanzor, S., Li, Y., Bailey, D., Augyte, S., Huang, M., Marty-Rivera, M., Jannink, J., Yarish, C., & Lindell, S. Comparative analysis of morphometric traits of farmed sugar kelp and skinny kelp, Saccharina spp., strains from the Northwest Atlantic. Journal of the World Aquaculture Society, (2021), https://doi.org/10.1111/jwas.12783.
    Description: Our team has initiated a selective breeding program for regional strains of sugar kelp, Saccharina latissima, to improve the competitiveness of kelp farming in the United States. Within our breeding program, we also include an endemic putative species, Saccharina angustissima, locally referred to as skinny kelp. We crossed uniclonal gametophyte cultures derived from 37 wild‐collected blades representing five sugar kelp strains and one skinny kelp strain to produce 104 unique crosses. Each cross was outplanted on a near‐shore research farm located in the Gulf of Maine (GOM). After the first farming season, our results indicated that sugar kelp and skinny kelp were interfertile, and produced mature and reproductively viable sporophytes. Morphological traits of individual blades varied depending on the parental contribution (sugar vs. skinny), with significant differences found in progeny blade length, width, thickness, and in stipe length and diameter. Despite these differences, wet weight and blade density per plot showed no statistical differences regardless of the cross. Given their published genetic similarity and their interfertility shown here, S. angustissima and S. latissima may not be different species, and may each contribute genetic diversity to breeding programs aimed at meeting ocean farming and market needs.
    Description: Funding was provided by the U.S. Department of Energy, ARPAe MARINER project contract number DE‐AR0000915 and DE‐AR0000911, AgCore Technologies of Rhode Island, and the Massachusetts Clean Energy Center, AmplifyMass Program.
    Keywords: Morphometrics ; Phenotyping ; Saccharina angustissima ; Saccharina latissima ; Seaweed aquaculture ; Selective breeding
    Repository Name: Woods Hole Open Access Server
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  • 59
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Walter, J. A., Castorani, M. C. N., Bell, T. W., Sheppard, L. W., Cavanaugh, K. C., & Reuman, D. C. Tail-dependent spatial synchrony arises from nonlinear driver-response relationships. Ecology Letters, 25, (2022): 1189– 1201, https://doi.org/10.1111/ele.13991.
    Description: Spatial synchrony may be tail-dependent, that is, stronger when populations are abundant than scarce, or vice-versa. Here, ‘tail-dependent’ follows from distributions having a lower tail consisting of relatively low values and an upper tail of relatively high values. We present a general theory of how the distribution and correlation structure of an environmental driver translates into tail-dependent spatial synchrony through a non-linear response, and examine empirical evidence for theoretical predictions in giant kelp along the California coastline. In sheltered areas, kelp declines synchronously (lower-tail dependence) when waves are relatively intense, because waves below a certain height do little damage to kelp. Conversely, in exposed areas, kelp is synchronised primarily by periods of calmness that cause shared recovery (upper-tail dependence). We find evidence for geographies of tail dependence in synchrony, which helps structure regional population resilience: areas where population declines are asynchronous may be more resilient to disturbance because remnant populations facilitate reestablishment.
    Description: This research was supported by NSF-OCE awards 2023555, 2023523, 2140335, 2023474, and the James S McDonnell Foundation. This project used data developed through the Santa Barbara Coastal Long Term Ecological Research project, funded through NSF-OCE 1831937.
    Keywords: Copula ; Disturbance ; Giant kelp ; Macrocystis pyrifera ; Nutrients ; Stability ; Synchrony ; Waves
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  • 60
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rypkema, N., Schmidt, H., & Fischell, E. Synchronous-clock range-angle relative acoustic navigation: a unified approach to multi-AUV localization, command, control, and coordination. Journal of Field Robotics, 2(1), (2022): 774–806, https://doi.org/10.55417/fr.2022026.
    Description: This paper presents a scalable acoustic navigation approach for the unified command, control, and coordination of multiple autonomous underwater vehicles (AUVs). Existing multi-AUV operations typically achieve coordination manually by programming individual vehicles on the surface via radio communications, which becomes impractical with large vehicle numbers; or they require bi-directional intervehicle acoustic communications to achieve limited coordination when submerged, with limited scalability due to the physical properties of the acoustic channel. Our approach utilizes a single, periodically broadcasting beacon acting as a navigation reference for the group of AUVs, each of which carries a chip-scale atomic clock and fixed ultrashort baseline array of acoustic receivers. One-way travel-time from synchronized clocks and time-delays between signals received by each array element allow any number of vehicles within receive distance to determine range, angle, and thus determine their relative position to the beacon. The operator can command different vehicle behaviors by selecting between broadcast signals from a predetermined set, while coordination between AUVs is achieved without intervehicle communication by defining individual vehicle behaviors within the context of the group. Vehicle behaviors are designed within a beacon-centric moving frame of reference, allowing the operator to control the absolute position of the AUV group by repositioning the navigation beacon to survey the area of interest. Multiple deployments with a fleet of three miniature, low-cost SandShark AUVs performing closed-loop acoustic navigation in real-time provide experimental results validated against a secondary long-baseline positioning system, demonstrating the capabilities and robustness of our approach with real-world data.
    Description: This work was partially supported by the Office of Naval Research, the Defense Advanced Research Projects Agency, Lincoln Laboratory, and the Reuben F. and Elizabeth B. Richards Endowed Funds at WHOI.
    Keywords: Underwater robotics ; Navigation ; Multirobot systems ; Localization ; Marine robotics
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  • 61
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Castorani, M. C. N., Bell, T. W., Walter, J. A., Reuman, D. C., Cavanaugh, K. C., & Sheppard, L. W. Disturbance and nutrients synchronise kelp forests across scales through interacting Moran effects. Ecology Letters, 25(8), (2022): 1854-1868, https://doi.org/10.1111/ele.14066.
    Description: Spatial synchrony is a ubiquitous and important feature of population dynamics, but many aspects of this phenomenon are not well understood. In particular, it is largely unknown how multiple environmental drivers interact to determine synchrony via Moran effects, and how these impacts vary across spatial and temporal scales. Using new wavelet statistical techniques, we characterised synchrony in populations of giant kelp Macrocystis pyrifera, a widely distributed marine foundation species, and related synchrony to variation in oceanographic conditions across 33 years (1987–2019) and 〉900 km of coastline in California, USA. We discovered that disturbance (storm-driven waves) and resources (seawater nutrients)—underpinned by climatic variability—act individually and interactively to produce synchrony in giant kelp across geography and timescales. Our findings demonstrate that understanding and predicting synchrony, and thus the regional stability of populations, relies on resolving the synergistic and antagonistic Moran effects of multiple environmental drivers acting on different timescales.
    Description: This study was funded by the U.S. National Science Foundation (NSF) through linked NSF-OCE awards 2023555, 2023523, 2140335, and 2023474 to M.C.N.C., K.C.C., T.W.B., and D.C.R., respectively. The research was initiated during a synthesis working group at the Long Term Ecological Research Network Office and National Center for Ecological Analysis and Synthesis funded under NSF-DEB award 1545288. D.C.R. and L.W.S. were also partly supported by NSF award 1714195, the McDonnell Foundation, and the California Department of Fish and Wildlife Delta Science Program. This project used data developed through the Santa Barbara Coastal Long Term Ecological Research project, funded through NSF-OCE award 1831937.
    Keywords: Coherence ; Disturbance ; Moran effect ; Nitrate ; North Pacific Gyre Oscillation ; Oceanography ; Population dynamics ; Remote sensing ; Spatial synchrony ; Wavelet transforms
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  • 62
    Publication Date: 2022-10-20
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Martins, M. C. I., Miller, C., Hamilton, P., Robbins, J., Zitterbart, D. P., & Moore, M. Respiration cycle duration and seawater flux through open blowholes of humpback (Megaptera novaeangliae) and North Atlantic right (Eubalaena glacialis) whales. Marine Mammal Science, (2020): 1-20, doi:10.1111/mms.12703.
    Description: Little is known about the dynamics of baleen whale respiratory cycles, especially the mechanics and activity of the blowholes and their interaction with seawater. In this study, the duration of complete respiration cycles (expiration/inhalation events) were quantified for the first time in two species: North Atlantic right whale (NARW) and humpback whale (HW) using high resolution, detailed imagery from an unoccupied aerial system (UAS). The mean duration of complete respiration cycles (expiration/inhalation event) in the NARW and HW were 3.07 s (SD = 0.503, n = 15) and 2.85 s (SD = 0.581, n = 21), respectively. Furthermore, we saw no significant differences in respiration cycle duration between age and sex classes in the NARW, but significant differences were observed between age classes in the HW. The observation of seawater covering an open blowhole was also quantified, with NARW having 20% of all breaths with seawater presence versus 90% in HW. Seawater incursion has not been described previously and challenges the general consensus that water does not enter the respiratory tract in baleen whales. Prevalent seawater has implications for the analysis and interpretation of exhaled respiratory vapor/mucosa samples, as well as for the potential inhalation of oil in spills.
    Description: Samples were collected under NMFS NOAA Permits 17355, 17355‐01, and 21371, and with approval from the Woods Hole Oceanographic Institution Institutional Animal Care and Use Committee. Funding by Ocean Life Institute of the Woods Hole Oceanographic Institution, NOAA NA14OAR4320158 and University College London Master of Research in Biodiversity, Evolution and Conservation program.
    Keywords: Humpback whale ; North Atlantic right whale ; Respiratory cycle ; Respiratory health ; Unoccupied aerial systems
    Repository Name: Woods Hole Open Access Server
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  • 63
    Publication Date: 2022-10-20
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Caruso, F., Hickmott, L., Warren, J. D., Segre, P., Chiang, G., Bahamonde, P., Español-Jiménez, S., Li, S., & Bocconcelli, A. Diel differences in blue whale (Balaenoptera musculus) dive behavior increase nighttime risk of ship strikes in northern Chilean Patagonia. Integrative Zoology, (2020): 1-18, doi:10.1111/1749-4877.12501.
    Description: The northern Chilean Patagonia region is a key feeding ground and a nursing habitat in the southern hemisphere for blue whales (Balaenoptera musculus). From 2014 to 2019, during 6 separate research cruises, the dive behavior of 28 individual blue whales was investigated using bio‐logging tags (DTAGs), generating ≈190 h of data. Whales dove to significantly greater depths during the day compared to nighttime (day: 32.6 ± 18.7 m; night: 6.2 ± 2.7 m; P 〈 0.01). During the night, most time was spent close to the surface (86% ± 9.4%; P 〈 0.01) and at depths of less than 12 m. From 2016 to 2019, active acoustics (scientific echosounders) were used to record prey (euphausiids) density and distribution simultaneously with whale diving data. Tagged whales appeared to perform dives relative to the vertical migration of prey during the day. The association between diurnal prey migration and shallow nighttime dive behavior suggests that blue whales are at increased risk of ship collisions during periods of darkness since the estimated maximum ship draft of vessels operating in the region is also ≈12 m. In recent decades, northern Chilean Patagonia has seen a large increase in marine traffic due to a boom in salmon aquaculture and the passenger ship industry. Vessel strike risks for large whales are likely underestimated in this region. Results reported in this study may be valuable for policy and mitigation decisions regarding conservation of the endangered blue whale.
    Description: This work was conducted under Chilean research permit PINV 38–2014 Ballena Azul, Golfo Corcovado, from the Ministerio de Economia, Fomento y Turismo, Subsecreteria de Pesca y Acuicultura. We would like to thank the crews of the vessels Centinela, Khronos and Solidaridad for their involvement in the fieldwork. Special thanks to Rafaela Landea‐Briones, Gloria Howes, Esteban Tapia Brunet, Pepe Montt, Thomas Montt, and Daniel Casado for helping and welcoming us in Patagonia. Thanks to MERI Foundation and their students Carlos Cantergiani, Andrea Hirmas and Elvira Vergara for their support and contributions to field efforts. We extend our gratitude to our collaborators Laela Sayigh, Michael Moore, Daniel Zitterbart, Frants Jensen, Aran Mooney, John Durban, Jeremy Goldbogen, and Dave Cade. Thanks to WHOI for financial and technical support. The data analysis and paper writing was financially supported by the National Key Research and Development Program of China (Grant number 2016YFC0300802); the biodiversity investigation, observation and assessment program (2019‐2023) of the Ministry of Ecology and Environment of China; and Indian Ocean Ninety‐east Ridge Ecosystem and Marine Environment Monitoring and Protection, supported by the China Ocean Mineral Resources R&D Association (no. DY135‐E2‐4). Additionally, FC thanks the President's International Fellowship Initiative (PIFI) of the Chinese Academy of Sciences.
    Keywords: Bio‐logging tags ; Blue whale ; Diving profile ; Ocean conservation ; Prey distribution
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  • 64
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Billings, G., Walter, M., Pizarro, O., Johnson-Roberson, M., & Camilli, R. Towards automated sample collection and return in extreme underwater environments. Journal of Field Robotics, 2(1), (2022): 1351–1385, https://doi.org/10.55417/fr.2022045.
    Description: In this report, we present the system design, operational strategy, and results of coordinated multivehicle field demonstrations of autonomous marine robotic technologies in search-for-life missions within the Pacific shelf margin of Costa Rica and the Santorini-Kolumbo caldera complex, which serve as analogs to environments that may exist in oceans beyond Earth. This report focuses on the automation of remotely operated vehicle (ROV) manipulator operations for targeted biological sample-collection-and-return from the seafloor. In the context of future extraterrestrial exploration missions to ocean worlds, an ROV is an analog to a planetary lander, which must be capable of high-level autonomy. Our field trials involve two underwater vehicles, the SuBastian ROV and the Nereid Under Ice (NUI) hybrid ROV for mixed initiative (i.e., teleoperated or autonomous) missions, both equipped seven-degrees-of-freedom hydraulic manipulators. We describe an adaptable, hardware-independent computer vision architecture that enables high-level automated manipulation. The vision system provides a three-dimensional understanding of the workspace to inform manipulator motion planning in complex unstructured environments. We demonstrate the effectiveness of the vision system and control framework through field trials in increasingly challenging environments, including the automated collection and return of biological samples from within the active undersea volcano Kolumbo. Based on our experiences in the field, we discuss the performance of our system and identify promising directions for future research.
    Description: This work was funded under a NASA PSTAR grant, number NNX16AL08G, and by the National Science Foundation under grants IIS-1830660 and IIS-1830500. The authors would like to thank the Costa Rican Ministry of Environment and Energy and National System of Conservation Areas for permitting research operations at the Costa Rican shelf margin, and the Schmidt Ocean Institute (including the captain and crew of the R/V Falkor and ROV SuBastian) for their generous support and making the FK181210 expedition safe and highly successful. Additionally, the authors would like to thank the Greek Ministry of Foreign Affairs for permitting the 2019 Kolumbo Expedition to the Kolumbo and Santorini calderas, as well as Prof. Evi Nomikou and Dr. Aggelos Mallios for their expert guidance and tireless contributions to the expedition.
    Keywords: Underwater robotics ; Mobile manipulation ; Marine robotics ; Exploration
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  • 65
    Publication Date: 2022-10-18
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Pold, G., Kwiatkowski, B. L., Rastetter, E. B., & Sistla, S. A. Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe-plant-soil model. Soil Biology & Biochemistry, 165, (2022): 108489, https://doi.org/10.1016/j.soilbio.2021.108489.
    Description: Requirements for biomass carbon (C), nitrogen (N), and phosphorus (P) constrain organism growth and are important agents for structuring ecosystems. Arctic tundra habitats are strongly nutrient limited as decomposition and recycling of nutrients are slowed by low temperature. Modeling interactions among these elemental cycles affords an opportunity to explore how disturbances such as climate change might differentially affect these nutrient cycles. Here we introduce a C–N–P-coupled version of the Stoichiometrically Coupled Acclimating Microbe-Plant-Soil (SCAMPS) model, “SCAMPS-CNP”, and a corresponding modified CN-only model, “SCAMPS-CN”. We compared how SCAMPS-CNP and the modified SCAMPS-CN models project a moderate (RCP 6.0) air warming scenario will impact tussock tundra nutrient availability and ecosystem C stocks. SCAMPS-CNP was characterized by larger SOM and smaller organism C stocks compared to SCAMPS-CN, and a greater reduction in ecosystem C stocks under warming. This difference can largely be attributed to a smaller microbial biomass in the CNP model, which, instead of being driven by direct costs of P acquisition, was driven by variable resource limitation due to asynchronous C, N, and P availability and demand. Warming facilitated a greater relative increase in plant and microbial biomass in SCAMPS-CNP, however, facilitated by increased extracellular enzyme pools and activity, which more than offset the metabolic costs associated with their production. Although the microbial community was able to flexibly adapt its stoichiometry and become more bacteria-like (N-rich) in both models, its stoichiometry deviated further from its target value in the CNP model because of the need to balance cellular NP ratio. Our results indicate that seasonality and asynchrony in resources affect predicted changes in ecosystem C storage under warming in these models, and therefore build on a growing body of literature indicating stoichiometry should be considered in carbon cycling projections.
    Description: This work was funded by the National Science Foundation Signals in the Soil grant number 1841610 to SAS and EBR.
    Keywords: Stoichiometry ; Modeling ; Microbial physiology ; Tundra ; Climate change
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  • 66
    Publication Date: 2022-10-18
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tamborski, J., Cai, P., Eagle, M., Henderson, P., & Charette, M. Revisiting 228Th as a tool for determining sedimentation and mass accumulation rates. Chemical Geology, 607, (2022): 121006, https://doi.org/10.1016/j.chemgeo.2022.121006.
    Description: The use of 228Th has seen limited application for determining sedimentation and mass accumulation rates in coastal and marine environments. Recent analytical advances have enabled rapid, precise measurements of particle-bound 228Th using a radium delayed coincidence counting system (RaDeCC). Herein we review the 228Th cycle in the marine environment and revisit the historical use of 228Th as a tracer for determining sediment vertical accretion and mass accumulation rates in light of new measurement techniques. Case studies comparing accumulation rates from 228Th and 210Pb are presented for a micro-tidal salt marsh and a marginal sea environment. 228Th and 210Pb have been previously measured in mangrove, deltaic, continental shelf and ocean basin environments, and a literature synthesis reveals that 228Th (measured via alpha or gamma spectrometry) derived accumulation rates are generally equal to or greater than estimates derived from 210Pb, reflecting different integration periods. Use of 228Th is well-suited for shallow (〈15 cm) cores over decadal timescales. Application is limited to relatively homogenous sediment profiles with minor variations in grain size and minimal bioturbation. When appropriate conditions are met, complimentary use of 228Th and 210Pb can demonstrate that the upper layers of a core are undisturbed and can improve spatial coverage in mapping accumulation rates due to the higher sample throughput for sediment 228Th.
    Description: This research was undertaken thanks in part to funding from the Canada First Research Excellence Fund, through the Ocean Frontier Institute. This project was supported by U.S. Geological Survey Coastal and Marine Hazards and Resources Program. Any use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. PC acknowledges the support of the Natural Science Foundation of China (NSFC) through Grants No. 92058205.
    Keywords: Sedimentation ; Mass accumulation ; Thorium isotopes ; Lead-210 ; Wetlands ; Sea level rise
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  • 67
    Publication Date: 2022-10-12
    Description: Author Posting. © The Author(s), 2022. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Integrative & Comparative Biology 62(3), (2022): 805-816, https://doi.org/10.1093/icb/icac108.
    Description: Skates are a diverse group of dorso-ventrally compressed cartilaginous fish found primarily in high-latitude seas. These slow-growing oviparous fish deposit their fertilized eggs into cases, which then rest on the seafloor. Developing skates remain in their cases for 1–4 years after they are deposited, meaning the abiotic characteristics of the deposition sites, such as current and substrate type, must interact with the capsule in a way to promote long residency. Egg cases are morphologically variable and can be identified to species. Both the gross morphology and the microstructures of the egg case interact with substrate to determine how well a case stays in place on a current-swept seafloor. Our study investigated the egg case hydrodynamics of eight North Pacific skate species to understand how their morphology affects their ability to stay in place. We used a flume to measure maximum current velocity, or “break-away velocity,” each egg case could withstand before being swept off the substrate and a tilt table to measure the coefficient of static friction between each case and the substrate. We also used the programing software R to calculate theoretical drag on the egg cases of each species. For all flume trials, we found the morphology of egg cases and their orientation to flow to be significantly correlated with break-away velocity. In certain species, the morphology of the egg case was correlated with flow rate required to dislodge a case from the substrate in addition to the drag experienced in both the theoretical and flume experiments. These results effectively measure how well the egg cases of different species remain stationary in a similar habitat. Parsing out attachment biases and discrepancies in flow regimes of egg cases allows us to identify where we are likely to find other elusive species nursery sites. These results will aid predictive models for locating new nursery habitats and protective policies for avoiding the destruction of these nursery sites.
    Description: This work was supported by the NSF-REU and FHL Blinks-Beacon for funding JNE. And the Stephen and Ruth Wainwright Endowed Fellowship, BEACON and Hoag Awards, Robert T. Paine Experimental and Field Ecology Award, FHL Award, FHL Marine Science Fund, FHL Student Fund (Kohn), Patricia L. Dudley Endowment for funding KCH.
    Description: 2023-07-04
    Repository Name: Woods Hole Open Access Server
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  • 68
    Publication Date: 2022-10-11
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Våge, K., Semper, S., Valdimarsson, H., Jónsson, S., Pickart, R., & Moore, G. Water mass transformation in the Iceland Sea: contrasting two winters separated by four decades. Deep Sea Research Part I: Oceanographic Research Papers, 186, (2022): 103824, https://doi.org/10.1016/j.dsr.2022.103824.
    Description: Dense water masses formed in the Nordic Seas flow across the Greenland–Scotland Ridge and contribute substantially to the lower limb of the Atlantic Meridional Overturning Circulation. Originally considered an important source of dense water, the Iceland Sea gained renewed interest when the North Icelandic Jet — a current transporting dense water from the Iceland Sea into Denmark Strait — was discovered in the early 2000s. Here we use recent hydrographic data to quantify water mass transformation in the Iceland Sea and contrast the present conditions with measurements from hydrographic surveys conducted four decades earlier. We demonstrate that the large-scale hydrographic structure of the central Iceland Sea has changed significantly over this period and that the locally transformed water has become less dense, in concert with a retreating sea-ice edge and diminished ocean-to-atmosphere heat fluxes. This has reduced the available supply of dense water to the North Icelandic Jet, but also permitted densification of the East Greenland Current during its transit through the presently ice-free western Iceland Sea in winter. Together, these changes have significantly altered the contribution from the Iceland Sea to the overturning in the Nordic Seas over the four decade period.
    Description: Support for this work was provided by the Trond Mohn Foundation, Norway under grant BFS2016REK01 (K.V. and S.S.), the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 101022251 (S.S.), the US National Science Foundation under grants OCE-1259618 and OCE- 1948505 (R.S.P), and the Natural Sciences and Engineering Research Council of Canada (G.W.K.M).
    Keywords: Iceland Sea ; Water mass transformation ; North Icelandic Jet ; Iceland–Faroe Slope Jet ; East Greenland Current ; Denmark Strait overflow water
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  • 69
    Publication Date: 2022-10-10
    Description: There are three classes of geothermometers and fCO2-indicators (collectively known as geoindicators): the traditional or classical ones, the theoretical activity-based geoindicators, and multicomponent chemical geothermometry. Most traditional geothermometers (e.g., SiO2, Nasingle bondK, Na-K-Ca, Ksingle bondMg) are linear functions linking the logarithm of the equilibrium constant of the controlling reaction to the absolute temperature reciprocal. Total concentrations are considered in most traditional geothermometers. Thanks to these two characteristics, the traditional geothermometers are simple to be used, which explains their widespread use. However, there are at least two issues which have been disregarded or not properly considered in the derivation of traditional geothermometers. One is that total concentrations of relevant solutes can deviate considerably from the activities of the aqueous species participating to the controlling mineral-solution reactions due to the formation of aqueous complexes. The other concerns the hydrothermal minerals, with some having variable composition and adularia being affected by Alsingle bondSi order-disorder on the tetrahedral sites. To overcome these two issues, theoretical activity-based geoindicators were recently proposed. To use these geoindicators is necessary to run a speciation program, but computed temperatures and CO2 fugacities are more reliable than those given by traditional geoindicators and additional information is obtained on the hydrothermal minerals present in the geothermal aquifer. Multicomponent chemical geothermometry consists in simulating the heating of the aqueous solution of interest from the P-T conditions present at the surface to those occurring in the geothermal aquifer. Both multicomponent chemical geothermometry and theoretical activity-based geoindicators call for the use of a suitable computer code and an internally consistent thermodynamic database. It would be desirable for the database to be shared, accepted and used by the entire scientific community.
    Description: Published
    Description: 107097
    Description: 1TR. Georisorse
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 70
    Publication Date: 2022-10-05
    Description: Quantification of phthalates or phthalic acid esters (PAEs) might be problematic due to matrix overlap, auto-self absorbance and background scattering noise by the plastic lab materials although plastics have been reported in the release of PAEs. These materials (ambient air, reagents bottles, sampling devices, and various analytical instruments), are ubiquitous in the laboratory environment, thereby making it more difficult to reliably analyze of trace concentration of PAEs. Thus, in the current study, a straight forward and reliable protocol has been established for the analysis of PAEs including control of blank contamination, and the experimental conditions such as extraction time and temperature were optimized. The mass of PAEs in blank tests of selected materials ranged from 3±0.7 to 35±6 ng for liquid-liquid extraction (LLE) and from 5±1.8 to 63±15 ng for solid-phase extraction (SPE). For both extraction methods, higher blank values were measured for dibutyl phthalate (DBP) (35±6 ng, 12±3 ng), and DEHP (63±12 ng, 23±5 ng) in LLE and SPE, respectively. Average recoveries of PAEs in LLE were 90-97% and obtained with successive aliquots of 2 mL, 1 mL, and 1 mL dichloromethane (DCM). For SPE, recoveries up to 86-90% were achieved with successive aliquots of 5, 3, and 2 mL DCM at a sample flow rate of 5 mL min -1 . Under the optimized conditions, the method quantification limits (MQL) for PAEs was 10-20 ng L -1 for LLE and 10-35 ng L -1 for SPE. Moreover, the dissolved concentrations of PAEs from LDPE measured by the LLE method ranged 〈 1.5 to 5.83 ng cm -2, and those measured by SPE ranged from 1.0to256ngL -1 , in seawater samples of Sharm Obhur. The method has lower MQL values for LLE and SPE than average reported values of 10-100 ng L -1 and 30-100 ng L -1 , respectively.
    Type: Article , NonPeerReviewed
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  • 71
    Publication Date: 2022-09-30
    Description: Mud volcanoes are rapidly-evolving geological phenomena characterized by the surface expulsion of sediments and fluids from over-pressurized underlying reservoirs. We investigate the Nirano Mud Volcano, Northern Italy, with seismic methods to better understand the dynamic evolution of the system and shed light on its subsurface structure. Our study allowed to detect and characterize three different types of high-frequency drumbeat signals that are present in the most active part of the mud volcano plumbing system. With a back-projection method based on the cross-correlation envelope of signals recorded at different station pairs, we can determine the source location of the drumbeats. These coincide with the location of V/H (vertical-to-horizontal) amplitude peaks obtained from an ambient vibration profile and resistivity anomalies identified in a previous study. We observe that the drumbeats are P-wave dominated signals, with characteristics similar to those found in magmatic settings, i.e. LPs (long-period signals). We suggest that such tremors originate from the migration of mud and gas inside the mud volcanic conduits. The source location, waveform and frequency content of the drumbeats evolve over time. We found that drumbeat occurrence is directly linked with morphological changes at surface.
    Description: Published
    Description: 107619
    Description: 7A. Geofisica per il monitoraggio ambientale
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 72
    Publication Date: 2022-09-26
    Description: Processing remains of brown shrimp, Crangon crangon, account for up to 60 % of the catch while only the small muscle fraction is used for human consumption. Incorporation into aquafeeds for high-valued species would reduce waste, create by-product value and promote sustainable aquaculture development. A detailed chemical characterisation of the remains from mechanically peeled brown shrimp was made and apparent nutrient digestibility coefficients in Litopenaeus vannamei were investigated. Brown shrimp processing remains (BSPR) contain substantial amounts of key nutrients (521 g⋅kg-1 crude protein, 74 g⋅kg-1 total lipid, 15 MJ⋅kg-1 gross energy) and valuable functional ingredients were detected (cholesterol, astaxanthin). Apparent energy (82 %) and protein (86 %) digestibility coefficients reveal good bioavailability of these nutrients. Dry matter digestibility was lower (64 %) presumably due to the high ash content (244 g⋅kg-1). The amino acid profile meets dietary requirements of penaeid shrimp with high apparent lysine and methionine digestibility coefficients. Analysis of macro- and micro minerals showed reasonable levels of required dietary minerals (phosphorus, magnesium, copper, manganese, selenium, zinc) and apparent copper digestibility was high (93 %). Contamination levels present in BSPR were below European standards acceptable for human consumption. Processing remains of brown shrimp have a high potential as alternative feed ingredient in sustainable diets for L. vannamei in recirculating aquaculture systems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 73
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    Oxford University Press
    In:  EPIC3Geophysical Journal International, Oxford University Press, 231, pp. 1959-1981
    Publication Date: 2022-09-16
    Description: Seismic reflection and refraction data were collected in 2007 and 2012 to reveal the crustal fabric on a single long composite profile offshore Prydz Bay, East Antarctica. A P-wave velocity model provides insights on the crustal fabric, and a gravity-constrained density model is used to describe the crustal and mantle structure. The models show that a 230-km- wide continent–ocean transition separates stretched continental from oceanic crust along our profile. While the oceanic crust close to the continent–ocean boundary is just 3.5–5 km thick, its thickness increases northwards towards the Southern Kerguelen Plateau to 12 km. This change is accompanied by thickening of a lower crustal layer with high P-wave velocities of up to 7.5 km s–1, marking intrusive rocks emplaced beneath the mid-ocean ridge under increasing influence of the Kerguelen plume. Joint interpretations of our crustal model, seismic reflection data and magnetic data sets constrain the age and extent of oceanic crust in the research area. Oceanic crust is shown to continue to around 160 km farther south than has been interpreted in previous data, with profound implications for plate kinematic models of the region. Finally, by combining our findings with a regional magnetic data compilation and regional seismic reflection data we propose a larger extent of oceanic crust in the Enderby Basin than previously known.
    Repository Name: EPIC Alfred Wegener Institut
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  • 74
    Publication Date: 2022-09-15
    Description: Phytoplankton stand at the base of the marine food-web, and play a major role in global carbon cycling. Rising CO2 levels and temperatures are expected to enhance growth and alter carbon:nutrient stoichiometry of marine phytoplankton, with possible consequences for the functioning of marine food-webs and the oceanic carbon pump. To date, however, the consistency of phytoplankton stoichiometric responses remains unclear. We therefore performed a meta-analysis on data from experimental studies on stoichiometric responses of marine phytoplankton to elevated pCO2 and 3–5° warming under nutrient replete and limited conditions. Our results demonstrate that elevated pCO2 increased overall phytoplankton C:N (by 4%) and C:P (by 9%) molar ratios under nutrient replete conditions, as well as phytoplankton growth rates (by 6%). Nutrient limitation amplified the CO2 effect on C:N and C:P ratios, with increases to 27% and 17%, respectively. In contrast to elevated pCO2, warming did not consistently alter phytoplankton elemental composition. This could be attributed to species- and study-specific increases and decreases in stoichiometry in response to warming. While our observed moderate CO2-driven changes in stoichiometry are not likely to drive marked changes in food web functioning, they are in the same order of magnitude as current and projected estimations of oceanic carbon export. Therefore, our results may indicate a stoichiometric compensation mechanism for reduced oceanic carbon export due to declining primary production in the near future.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 75
    Publication Date: 2022-09-15
    Description: We have mapped and constrained the timing of tectonically deformed uplifted Late Quaternary palaeoshorelines in the Messina Strait, southern Italy, an area above a subduction zone containing active normal faults. The palaeoshorelines are preserved from up to thirteen Late Quaternary sea-level highstands, providing a record of the deformation over this timescale (~500 ka) for the Messina-Taormina Fault, the Reggio Calabria Fault and the Armo Fault. The palaeoshorelines reveal spatial patterns of uplift through time along the strike of these normal faults, and, given the across strike arrangement of the faults, also reveal how the contribution of each fault to the regional strain-rate progressed through time. The results reveal that the uplift rates mapped within the fault hangingwalls and footwalls were not constant through time, with a marked change in the location of strain accumulation at ~50 ka. The uplift rates, once converted into throw-rates, imply that the three faults comprised similar throw-rates prior to ~50 ka (in the range 0.77–0.96 mm/yr), with the Armo and Reggio Calabria faults then switching to lower rates (0.32 mm/yr and 0.33 mm/yr respectively), whilst the Messina-Taormina Fault accelerated to 2.34 mm/yr. The regional extension rate, gained by summing the implied heave rates across the three faults, was maintained through time despite this re-organisation of local strain accumulation at ~50 ka. We explain these out-of-phase fault throw-rate changes during the constant-rate regional extension conditions as due to interactions between these upper plate normal faults. We finally discuss how fault throw-rates changing through time may affect a long-term seismic hazard assessment within active normal fault systems.
    Description: Published
    Description: 105432
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Crustal Deformation ; Active Faults ; Marine terraces ; Uplift ; 04.04. Geology ; 04.07. Tectonophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 76
    Publication Date: 2022-09-15
    Description: Innovations in virtual reality (VR) technology have led to exciting possibilities in teaching earth sciences, allowing students to experience complex geological sites that, due to cost and logistical reasons, they would not normally be able to experience. The need for high quality online digital learning resources and blended learning was brought to the forefront during the SARS-CoV-2 pandemic, as courses with a traditional physical field work component were forced to move online and provide alternatives to students. While it is unlikely that virtual field trips (VFT) would be accepted by students as a replacement of real-world fieldwork moving out of the pandemic, research shows promise that using IVR experiences can lead to enhanced learning outcomes in geosciences, warranting its inclusion on the curricula. This paper presents the outputs of a project to improve student learning in complex geological environments using VR. Here we outline a workflow that was developed to collect high resolution imagery using remote sensing to create digital outcrop models (DOM) of complex geological sites. Using this framework, this paper will then explore the use of VR for an investigation of the Husavik Triple Junction, a complex structural site in northern Iceland, explaining how the drone data was converted to a 3D DOM and demonstrating how VR can be used to simulate real world field mapping. Finally, we describe how these IVR activities have been integrated into taught modules at postgraduate level and discuss how the use of IVR experiences can complement existing geoscience curriculum design.
    Description: Erasmus+ Key Action 2 funded project 2017-1-UK01-KA203-036719 3DTeLC-Bringing the 3Dworld into the classroom: a new approach to Teaching, Learning and Communicating the science of geohazards in terrestrial and marine environments coordinated by M. Whitworth. (https://ec.europa.eu/programmes/erasmus-plus/projects/eplus-projectdetails/#project/2017-1-UK01-KA203-036719and http://www.3dtelc.com) and the MIUR Project ACPR15T4_00098–Argo3D, coordinated by A. Tibaldi (http://argo3d.unimib.it/).
    Description: Published
    Description: 104681
    Description: 1TM. Formazione
    Description: JCR Journal
    Keywords: Virtual reality ; Geosciences ; Teaching ; Fieldwork ; Structural geology ; Digital outcrop model ; 05.04. Instrumentation and techniques of general interest ; 04.04. Geology ; 05.03. Educational, History of Science, Public Issues
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 77
    Publication Date: 2022-09-14
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in van Haren, H., Voet, G., Alford, M., & Torres, D. Internal wave breaking near the foot of a steep East-Pacific continental slope. Progress In Oceanography, 205, (2022): 102817, https://doi.org/10.1016/j.pocean.2022.102817.
    Description: The sloping sides of ocean basins are of particular interest for their potential importance for considerable turbulence generation via internal wave breaking and associated water circulation. The difference with the ocean interior may be manifest in a 10–100 m relatively thin layer above the seafloor. We set up an observational study with high-resolution stand-alone instrumentation attached to a custom-made release-anchor frame sampling to within 0.5 m from the seafloor up to 150 m above it. For two months, the taut wire moored instrumentation was tested in 1100 m water depth of the East-Pacific, off the coast of San Diego (CA, USA). The mooring was oceanward of an underwater bank and near the foot of its steep but gentle two-dimensional slope. Temperature sensor data demonstrate that internal waves peak at semidiurnal frequencies. While short (〈1 h) periods show complicated structure, tidally averaged turbulence dissipation rate monotonically increases towards the seafloor over two orders of magnitude. The largest turbulence dissipation rates are observed during the relatively warm phase of an internal wave. Although the local topographic slope is supercritical for semidiurnal internal waves, turbulent bores propagating up the slope and hydraulic jumps are not observed. Most of the turbulence appears to be dominated by shear production, but not related to steady frictional flow near the seafloor.
    Description: This work has been partially funded from NSF-grant OCE-1756264.
    Keywords: Pacific Ocean ; Sloping topography ; High-resolution instrumentation ; Internal wave breaking ; High turbulence intensity near seafloor
    Repository Name: Woods Hole Open Access Server
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  • 78
    Publication Date: 2022-09-14
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Thomas, M., Jensen, F. H., Averly, B., Demartsev, V., Manser, M. B., Sainburg, T., Roch, M. A., & Strandburg-Peshkin, A. A practical guide for generating unsupervised, spectrogram-based latent space representations of animal vocalizations. The Journal of Animal Ecology, 91(8), (2022): 1567– 1581, https://doi.org/10.1111/1365-2656.13754.
    Description: 1. Background: The manual detection, analysis and classification of animal vocalizations in acoustic recordings is laborious and requires expert knowledge. Hence, there is a need for objective, generalizable methods that detect underlying patterns in these data, categorize sounds into distinct groups and quantify similarities between them. Among all computational methods that have been proposed to accomplish this, neighbourhood-based dimensionality reduction of spectrograms to produce a latent space representation of calls stands out for its conceptual simplicity and effectiveness. 2. Goal of the study/what was done: Using a dataset of manually annotated meerkat Suricata suricatta vocalizations, we demonstrate how this method can be used to obtain meaningful latent space representations that reflect the established taxonomy of call types. We analyse strengths and weaknesses of the proposed approach, give recommendations for its usage and show application examples, such as the classification of ambiguous calls and the detection of mislabelled calls. 3. What this means: All analyses are accompanied by example code to help researchers realize the potential of this method for the study of animal vocalizations.
    Description: This work was supported by HFSP Research Grant RGP0051/2019 to ASP, MBM and MAR, and funded by the Deutsche Forschungsgemeinschaft (DFG) under Germany's Excellence Strategy (EXC-2117-422037984). ASP received additional funding from the Gips-Schüle Stiftung, the Zukunftskolleg at the University of Konstanz and the Max-Planck-Institute of Animal Behaviour. VD was funded by the Minerva Stiftung and Alexander von Humboldt Foundation.
    Keywords: animal sounds ; animal vocalizations ; bioacoustics ; call classification ; dimensionality reduction ; spectrogram ; UMAP ; unsupervised learning
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  • 79
    Publication Date: 2022-09-13
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nelson, R. K., Scarlett, A. G., Gagnon, M. M., Holman, A. I., Reddy, C. M., Sutton, P. A., & Grice, K. Characterizations and comparison of low sulfur fuel oils compliant with 2020 global sulfur cap regulation for international shipping. Marine Pollution Bulletin, 180, (2022): 113791, https://doi.org/10.1016/j.marpolbul.2022.113791.
    Description: The International Marine Organization 2020 Global Sulfur Cap requires ships to burn fuels with 〈0.50% S and some countries require 〈0.10% S in certain Sulfur Emission Control Areas but little is known about these new types of fuels. Using both traditional GC–MS and more advanced chromatographic and mass spectrometry techniques, plus stable isotopic, δ13C and δ2H, analyses of pristane, phytane and n-alkanes, the organic components of a suite of three 0.50% S and three 0.10% S compliant fuels were characterized. Two oils were found to be near identical but all of the remaining oils could be forensically distinguished by comparison of their molecular biomarkers and by the profiles of the heterocyclic parent and alkylated homologues. Oils could also be differentiated by their δ13C and δ2H of n-alkanes and isoprenoids. This study provides important forensic data that may prove invaluable in the event of future oil spills.
    Description: This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors. CMR and RKN were supported by the National Science Foundation (OCE-1634478 and OCE-1756242). GC × GC analysis support provided by WHOI's Investment in Science Fund.
    Keywords: International Maritime Organisation ; Biomarkers ; Fuel oil ; Heterocyclics ; GC × GC ; Mass spectrometry
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  • 80
    Publication Date: 2022-09-05
    Description: The chemical composition of gases emitted by active volcanoes reflects both magma degassing and shallower processes, such as fluid-rock hydrothermal interaction and mixing with atmospheric-derived fluids. Untangling the magmatic fluid endmember within surface gas emission is therefore challenging, even with the use of well-known magma degassing tracers such as noble gases. Here, we investigate the deep magmatic fluid composition at the Nisyros caldera (Aegean Arc, Greece) by measuring nitrogen and noble gas abundances and isotopes in naturally degassing fumaroles. Gas samples were collected from 32 fumarolic vents at water-boiling temperature between 2018 and 2021. These fumaroles are admixtures of magmatic fluids typical of subduction zones, groundwater (or air saturated water, ASW), and air. The N2, He, and Ar composition of the magmatic endmember is calculated by reverse mixing modeling and shows N2/He = 31.8 ± 4.5, N2/Ar = 281.6, d15N = +7 ± 3 ‰, 3He/4He = 6.2 Ra (where Ra is air 3He/4He), and 40Ar/36Ar = 551.6 ± 19.8. Although N2/He is significantly low with respect to typical values for arc volcanoes (1,000–10,000), the contribution of subducted sediments to the Aegean Arc magma generation is reflected by the positive d15N values of Nisyros fumaroles. The low N2/He ratio indicates N2-depletion due to solubility-controlled differential degassing of an upper-crustal silicic (dacitic/rhyodacitic) melt in a high-crystallinity reservoir. We compare our 2018–2021 data with N2, He, and Ar values collected from the same fumaroles during a hydrothermal unrest following the seismic crisis in 1996–1997. Results show additions of both magmatic fluid and ASW during this unrest. In the same period, fumarolic vents display an increase in magmatic species relative to hydrothermal gas, such as CO2/CH4 and He/CH4 ratios, an increase of 50 C in the equilibrium temperature of the hydrothermal system (up to 325 C), and greater amounts of vapor separation. These variations reflect an episode of magmatic fluid expulsion during the seismic crisis. The excess of heat and mass supplied by the magmatic fluid injection is then dissipated through boiling of deeper and peripheral parts of the hydrothermal system. Reverse mixing modeling of fumarolic N2-He-Ar has therefore important ramifications not only to disentangle the magmatic signature from gases emitted during periods of dormancy, but also to trace episodes of magmatic outgassing and better understand the state of the upper crustal reservoir.
    Description: Published
    Description: 68-84
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: Noble gases ; Nitrogen isotope ; Mixing modeling ; Magmatic degassing ; High-crystallinity mush ; Caldera ; Unrest ; CO2 ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 81
    Publication Date: 2022-09-01
    Description: In the last years the scientific literature has been enriched with new models of the Moho depth in the Antarctica Continent derived by the seismic reflection technique and refraction profiles, receiver functions and seismic surface waves, but also by gravimetric observations over the continent. In particular, the gravity satellite missions of the last two decades have provided data in this remote region of the Earth and have allowed the investigation of the crust properties. Meanwhile, other important contributions in this direction has been given by the fourth International Polar Year (IPY, 2007–2008) which started seismographic and geodetic networks of unprecedented duration and scale, including airborne gravimetry over largely unexplored Antarctic frontiers. In this study, a new model for the Antarctica Moho depths is proposed. This new estimation is based on no satellite gravity measures, thanks to the availability of the gravity database ANTGG2015, that collects gravity data from ground-base, airborne and shipborne campaigns. In this new estimate of the Moho depths the contribution of the gravity measures has been maximized reducing any correction of the gravity measures and avoiding constraints of the solution to seismological observations and to geological evidence. With this approach a pure gravimetric solution has been determined. The model obtained is pretty in agreement with other Moho models and thanks to the use of independent data it can be exploited also for cross-validating different Moho depths solutions.
    Description: Published
    Description: 1404–1420
    Description: 1T. Struttura della Terra
    Description: JCR Journal
    Keywords: Antarctica ; Moho ; Gravity inversion ; Collocation ; ANTGG2015
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 82
    Publication Date: 2022-09-01
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Walker, S. E., & Echeverri, K. Spinal cord regeneration—the origins of progenitor cells for functional rebuilding. Current Opinion in Genetics & Development, 75, (2022):101917, https://doi.org/10.1016/j.gde.2022.101917.
    Description: The spinal cord is one of the most important structures for all vertebrate animals as it connects almost all parts of the body to the brain. Injury to the mammalian spinal cord has devastating consequences, resulting in paralysis with little to no hope of recovery. In contrast, other vertebrate animals have been known for centuries to be capable of functionally regenerating large lesions in the spinal cord. Here, we will review the current knowledge of spinal cord regeneration and recent work in different proregenerative animals that has begun to shed light on the cellular and molecular mechanisms these animals use to direct cells to rebuild a complex, functional spinal cord.
    Description: KE is supported by a grant from The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) R01 HD092451, start-up funds from the Marine Biological Laboratory (MBL), and funding from the Owens Family Foundation.
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  • 83
    Publication Date: 2022-09-01
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Yang, X., Zhu, Z., Qiu, S., Kroeger, K. D., Zhu, Z., & Covington, S. Detection and characterization of coastal tidal wetland change in the northeastern US using Landsat time series. Remote Sensing of Environment, 276, (2022): 113047, https://doi.org/10.1016/j.rse.2022.113047.
    Description: Coastal tidal wetlands are highly altered ecosystems exposed to substantial risk due to widespread and frequent land-use change coupled with sea-level rise, leading to disrupted hydrologic and ecologic functions and ultimately, significant reduction in climate resiliency. Knowing where and when the changes have occurred, and the nature of those changes, is important for coastal communities and natural resource management. Large-scale mapping of coastal tidal wetland changes is extremely difficult due to their inherent dynamic nature. To bridge this gap, we developed an automated algorithm for DEtection and Characterization of cOastal tiDal wEtlands change (DECODE) using dense Landsat time series. DECODE consists of three elements, including spectral break detection, land cover classification and change characterization. DECODE assembles all available Landsat observations and introduces a water level regressor for each pixel to flag the spectral breaks and estimate harmonic time-series models for the divided temporal segments. Each temporal segment is classified (e.g., vegetated wetlands, open water, and others – including unvegetated areas and uplands) based on the phenological characteristics and the synthetic surface reflectance values calculated from the harmonic model coefficients, as well as a generic rule-based classification system. This harmonic model-based approach has the advantage of not needing the acquisition of satellite images at optimal conditions (i.e., low tide status) to avoid underestimating coastal vegetation caused by the tidal fluctuation. At the same time, DECODE can also characterize different kinds of changes including land cover change and condition change (i.e., land cover modification without conversion). We used DECODE to track status of coastal tidal wetlands in the northeastern United States from 1986 to 2020. The overall accuracy of land cover classification and change detection is approximately 95.8% and 99.8%, respectively. The vegetated wetlands and open water were mapped with user's accuracy of 94.6% and 99.0%, and producer's accuracy of 98.1% and 93.5%, respectively. The cover change and condition change were mapped with user's accuracy of 68.0% and 80.0%, and producer's accuracy of 80.5% and 97.1%, respectively. Approximately 3283 km2 of the coastal landscape within our study area in the northeastern United States changed at least once (12% of the study area), and condition changes were the dominant change type (84.3%). Vegetated coastal tidal wetland decreased consistently (~2.6 km2 per year) in the past 35 years, largely due to conversion to open water in the context of sea-level rise.
    Description: This study was supported by USGS North Atlantic Coast Cooperative Ecosystem Studies Unit (CESU) Program for Detection and Characterization of Coastal Tidal Wetland Change (G19AC00354).
    Keywords: Coastal tidal wetland ; Landsat time series ; Change detection ; Classification ; Condition change ; Cover change ; Tide ; DECODE
    Repository Name: Woods Hole Open Access Server
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  • 84
    Publication Date: 2022-08-31
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fay, R., Hamel, S., van de Pol, M., Gaillard, J.-M., Yoccoz, N. G., Acker, P., Authier, M., Larue, B., Le Coeur, C., Macdonald, K. R., Nicol-Harper, A., Barbraud, C., Bonenfant, C., Van Vuren, D. H., Cam, E., Delord, K., Gamelon, M., Moiron, M., Pelletier, F., Rotella, J., Teplitsky, C., Visser, M. E., Wells, C. P., Wheelwright, N. T., Jenouvrier, S., & Saether, B.-E. Temporal correlations among demographic parameters are ubiquitous but highly variable across species. Ecology Letters, 25(7), (2022): 1640-1654, https://doi.org/10.1111/ele.14026.
    Description: Temporal correlations among demographic parameters can strongly influence population dynamics. Our empirical knowledge, however, is very limited regarding the direction and the magnitude of these correlations and how they vary among demographic parameters and species’ life histories. Here, we use long-term demographic data from 15 bird and mammal species with contrasting pace of life to quantify correlation patterns among five key demographic parameters: juvenile and adult survival, reproductive probability, reproductive success and productivity. Correlations among demographic parameters were ubiquitous, more frequently positive than negative, but strongly differed across species. Correlations did not markedly change along the slow-fast continuum of life histories, suggesting that they were more strongly driven by ecological than evolutionary factors. As positive temporal demographic correlations decrease the mean of the long-run population growth rate, the common practice of ignoring temporal correlations in population models could lead to the underestimation of extinction risks in most species.
    Description: This project was funded by the CNRS, including a long-term support by the OSU-OREME. Data collection for Weddell seals was supported by the National Science Foundation, Division of Polar Programs under grant number ANT-1640481 to J.J. Rotella, R.A. Garrott and D.B. Siniff and prior NSF Grants to R. A. Garrott, J. J. Rotella, D. B. Siniff and J. Ward Testa. Stéphanie Jenouvrier acknowledges the support of the NSF 1840058.
    Keywords: capture-recapture ; demographic correlation ; demography ; environmental stochasticity ; slow-fast continuum ; stochastic population dynamics ; temporal covariation
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  • 85
    Publication Date: 2022-08-30
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 86
    Publication Date: 2022-08-26
    Description: Reconstruction of geomagnetic field changes has a strong potential to complement geodynamo modeling and improve the understanding of Earth’s core dynamics. Recent works based on geomagnetic measure-ments pointed out that over the last two decades the position of the north magnetic pole has been largely determined by the influence of two competing flux lobes under Canada and Siberia. In order to understand if the waxing and waning of magnetic flux lobes have driven the path of geo-magnetic paleopoles in the past, we present an augmented and updated record of the chronology and paleosecular variation of geomagnetic field for the last 22 kyr derived from sedimentary cores collected along the north-western margin of Barents Sea and western margin of Spitsbergen (Arctic). The path of the virtual geomagnetic pole (VGP) has been reconstructed over this time period and compared with the maps of the radial component of the geomagnetic field at the core-mantle boundary, obtained from the most recent models. The VGP path includes centuries during which the VGP position is stable and cen-turies during which its motion accelerates. We recognize both clockwise and counterclockwise VGP paths, mostly developing inside the surface projection of the inner core tangent cylinder in the Arctic region. The VGP path seems to follow the appearance of Brpatches of normal magnetic flux, especially those located under Siberia and Canada areas, but also those that may cause peculiar paleomagnetic features such as the Levantine Iron Age Anomaly.
    Description: Published
    Description: 117762
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: 5A. Ricerche polari e paleoclima
    Description: JCR Journal
    Keywords: geomagnetic paleosecular variation ; relative paleointensit ; flux lobes ; Levantine Iron Age Anomaly ; marine sediment cores ; arctic region ; solid earth ; paleomagnetism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 87
    Publication Date: 2022-08-26
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2022. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: Defining the regional variability of minimum magnitude for earthquake detection is crucial for planning seismic networks. Knowing the earthquake detection magnitude values is fundamental for the optimal location of new stations and to select the priority for reactivating the stations of a seismic network in case of a breakdown. In general, the assessment of earthquake detection is performed by analysing seismic noise with spectral or more sophisticated methods. Further, to simulate amplitude values at the recording sites, spectral methods require knowledge of several geophysical parameters including rock density, S-wave velocity, corner frequency, quality factor, site specific decay parameter and so on, as well as a velocity model for the Earth's interior. The simulation results are generally expressed in terms of Mw and therefore a further conversion must be done to obtain the values of local magnitude (ML), which is the parameter commonly used for moderate and small earthquakes in seismic catalogues. Here, the relationship utilized by a seismic network to determine ML is directly applied to obtain the expected amplitude [in mm, as if it were recorded by a Wood–Anderson (WA) seismometer] at the recording site, without any additional assumptions. The station detection estimates are obtained by simply considering the ratio of the expected amplitude with respect to the background noise, also measured in mm. The seismic noise level for the station is estimated starting from four waveforms (each signal lasting 1 min) sampled at various times of the day for a period of one week. The proposed method is tested on Italian seismic events occurring in 2019 by using the locations of 16.879 earthquakes recorded by 374 stations. The first results indicate that by evaluating the station noise level with 5-s windows, a representative sample of the variability in expected noise level is generated for every station, even if only 4 min of signal per day over a week of recordings is used. The method was applied to define the detection level of the Italian National Seismic Network (RSN). The RSN detection level represents a reference for the definition and application of guidelines in the field of monitoring of subsurface industrial activities in Italy. The proposed approach can be successfully applied to define the current performance of a local seismic network (managed by private companies) and to estimate the expected further improvements, requested to fulfil the guidelines with the installation of new seismic stations. This method has been tested in Italy and can be reproduced wherever the local magnitude ML, based on synthetic WA records, is used.
    Description: Published
    Description: 1283–1297
    Description: 4T. Sismicità dell'Italia
    Description: JCR Journal
    Keywords: Time-series analysis ; Earthquake ground motions ; Seismic noise ; Induced seismicity ; 04.06. Seismology ; 05.04. Instrumentation and techniques of general interest
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 88
    Publication Date: 2022-08-19
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zitterbart, D., Bocconcelli, A., Ochs, M., & Bonnel, J. TOSSIT: a low-cost, hand deployable, rope-less and acoustically silent mooring for underwater passive acoustic monitoring. HardwareX, 11, (2022): e00304, https://doi.org/10.1016/j.ohx.2022.e00304.
    Description: Passive Acoustic Monitoring (PAM) has been used to study the ocean for decades across several fields to answer biological, geological and meteorological questions such as marine mammal presence, measures of anthropogenic noise in the ocean, and monitoring and prediction of underwater earthquakes and tsunamis. While in previous decades the high cost of acoustic instruments limited its use, miniaturization and microprocessor advances dramatically reduced the cost for passive acoustic monitoring instruments making PAM available for a broad scientific community. Such low-cost devices are often deployed by divers or on mooring lines with a surface buoy, which limit their use to diving depth and coastal regions. Here, we present a low-cost, low self-noise and hand-deployable PAM mooring design, called TOSSIT. It can be used in water as deep as 500 m, and can be deployed and recovered by hand by a single operator (more comfortably with two) in a small boat. The TOSSIT modular mooring system consists of a light and strong non-metallic frame that can fit a variety of sensors including PAM instruments, acoustic releases, additional power packages, environmental parameter sensors. The TOSSIT’s design is rope-less, which removes any risk of entanglement and keeps the self-noise very low.
    Description: The development of the TOSSIT mooring was supported by a Woods Hole Oceanographic institution Innovative Technology Award (Award number 25226). TOSSIT deployment in Argentina was supported by a Woods Hole Oceanographic Institution Mary Sears visitor award (Award number 24700) and TOSSIT deployments during SBCEX were funded by the Office of Naval Research Task Force Ocean (ONR TFO, Award number: N000141912627). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Keywords: Ocean ambient noise ; Mooring systems ; Soundscape ; Underwater sound ; Bioacoustics ; Oceanography ; Acoustical Oceanography
    Repository Name: Woods Hole Open Access Server
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  • 89
    Publication Date: 2022-08-19
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Aoki, L. R., Brisbin, M. M., Hounshell, A. G., Kincaid, D. W., Larson, E., Sansom, B. J., Shogren, A. J., Smith, R. S., & Sullivan-Stack, J. Preparing aquatic research for an extreme future: call for improved definitions and responsive, multidisciplinary approaches. Bioscience, 72(6), (2022): 508-520, https://doi.org/10.1093/biosci/biac020.
    Description: Extreme events have increased in frequency globally, with a simultaneous surge in scientific interest about their ecological responses, particularly in sensitive freshwater, coastal, and marine ecosystems. We synthesized observational studies of extreme events in these aquatic ecosystems, finding that many studies do not use consistent definitions of extreme events. Furthermore, many studies do not capture ecological responses across the full spatial scale of the events. In contrast, sampling often extends across longer temporal scales than the event itself, highlighting the usefulness of long-term monitoring. Many ecological studies of extreme events measure biological responses but exclude chemical and physical responses, underscoring the need for integrative and multidisciplinary approaches. To advance extreme event research, we suggest prioritizing pre- and postevent data collection, including leveraging long-term monitoring; making intersite and cross-scale comparisons; adopting novel empirical and statistical approaches; and developing funding streams to support flexible and responsive data collection.
    Repository Name: Woods Hole Open Access Server
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  • 90
    Publication Date: 2022-08-15
    Description: The sinking of carbon fixed via net primary production (NPP) into the ocean interior is an important part of marine biogeochemical cycles. NPP measurements follow a log-normal probability distribution, meaning NPP variations can be simply described by two parameters despite NPP's complexity. By analyzing a global database of open ocean particle fluxes, we show that this log-normal probability distribution propagates into the variations of near-seafloor fluxes of particulate organic carbon (POC), calcium carbonate, and opal. Deep-sea particle fluxes at subtropical and temperate time-series sites follow the same log-normal probability distribution, strongly suggesting the log-normal description is robust and applies on multiple scales. This log-normality implies that 29% of the highest measurements are responsible for 71% of the total near-seafloor POC flux. We discuss possible causes for the dampening of variability from NPP to deep-sea POC flux, and present an updated relationship predicting POC flux from mineral flux and depth.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 91
    Publication Date: 2022-08-15
    Description: The attenuation coefficient b is one of the most common ways to describe how strong the carbon flux is attenuated throughout the water column. Therefore, b is an essential input variable in many carbon flux and climate models. Marsay et al. (2015, https://doi.org/10.1073/pnas.1415311112) proposed that the median surface water temperature (0–500 m) may be a predictor of b, but our observations from Arctic waters challenge this hypothesis. We found a highly variable attenuation coefficient (b = 0.43–1.84) in cold Arctic waters (〈4.1 °C). Accordingly, we suggest that water temperature is not a globally valid predictor of the attenuation coefficient. We advocate instead that the phytoplankton composition and especially the relative abundance of diatoms can be used to parametrize the carbon flux attenuation in local and global carbon flux models.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 92
    Publication Date: 2022-08-02
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gomaa, F., Utter, D. R., Loo, W., Lahr, D. J. G., & Cavanaugh, C. M. Exploring the protist microbiome: the diversity of bacterial communities associated with Arcella spp. (Tubulina: Amoebozoa). European Journal of Protistology, 82, (2022): 125861, https://doi.org/10.1016/j.ejop.2021.125861.
    Description: Research on protist-bacteria interactions is increasingly relevant as these associations are now known to play important roles in ecosystem and human health. Free-living amoebae are abundant in all environments and are frequent hosts for bacterial endosymbionts including pathogenic bacteria. However, to date, only a small fraction of these symbionts have been identified, while the structure and composition of the total symbiotic bacterial communities still remains largely unknown. Here, we use the testate amoeba Arcella spp. as model organisms to investigate the specificity and diversity of Arcella-associated microbial communities. High-throughput amplicon sequencing from the V4 region of the 16S rRNA gene revealed high diversity in the bacterial communities associated with the wild Arcella spp. To investigate the specificity of the associated bacterial community with greater precision, we investigated the bacterial communities of two lab-cultured Arcella species, A. hemispherica and A. intermedia, grown in two different media types. Our results suggest that Arcella-bacteria associations are species-specific, and that the associated bacterial community of lab-cultured Arcella spp. remains distinct from that of the surrounding media. Further, each host Arcella species could be distinguished based on its bacterial composition. Our findings provide insight into the understanding of eukaryotic-bacterial symbiosis.
    Description: This project was funded by National Science Foundation Postdoctoral Research Fellowship in Biology to F. Gomaa, Grant Number: PRFB1611514. Support was provided to D.R.U. from the National Science Foundation Graduate Research Fellowship Program under Grant No. DGE1745303 to D.R.U and by Harvard University’s Department of Organismic and Evolutionary Biology program.
    Keywords: Arcella- associated microbiome ; Intracellular bacterial diversity ; Heterotrophic amoebae ; Amoeba-resistant bacteria
    Repository Name: Woods Hole Open Access Server
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  • 93
    Publication Date: 2022-07-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Carson, M., Doberneck, D., Hart, Z., Kelsey, H., Pierce, J., Porter, D., Richlen, M., Schandera, L., & Triezenberg, H. A strategic framework for community engagement in oceans and human health, Community Science, 1(1), (2022): e2022CSJ000001, https://doi.org/10.1029/2022csj000001.
    Description: Over the past two decades, scientific research on the connections between the health and resilience of marine ecosystems and human health, well-being, and community prosperity has expanded and evolved into a distinct “metadiscipline” known as Oceans and Human Health (OHH), recognized by the scientific community as well as policy makers. OHH goals are diverse and seek to improve public health outcomes, promote sustainable use of aquatic systems and resources, and strengthen community resilience. OHH research has historically included some level of community outreach and partner involvement; however, the increasing disruption of aquatic environments and urgency of public health impacts calls for a more systematic approach to effectively identify and engage with community partners to achieve project goals and outcomes. Herein, we present a strategic framework developed collaboratively by community engagement personnel from the four recently established U.S. Centers for Oceans and Human Health (COHH). This framework supports researchers in defining levels of community engagement and in aligning partners, purpose, activities, and approaches intentionally in their community engagement efforts. Specifically, we describe: (a) a framework for a range of outreach and engagement approaches; (b) the need for identifying partners, purpose, activities, and approaches; and (c) the importance of making intentional alignment among them. Misalignment across these dimensions may lead to wasting time or resources, eroding public trust, or failing to achieve intended outcomes. We illustrate the framework with examples from current COHH case studies and conclude with future directions for strategic community engagement in OHH and other environmental health contexts.
    Description: This publication was prepared by Heather Triezenberg and the team under award NA180AR4170102 from the National Oceanic and Atmospheric Administration, U.S. Department of Commerce through the Regents of the University of Michigan, and supported by funding from the NIH (1P01ES028939-01) and the NSF (1840715) to the Bowling Green State University Great Lakes Center for Fresh Waters and Human Health. Funding for M. L. Richlen was provided by the NSF (OCE1840381) and NIH (1P01-ES028938-01) through the Woods Hole Center for Oceans and Human Health. Research at the Center for Oceans and Human Health and Climate Change Interactions (OHHC2I) at the University of South Carolina is supported by the NIH Award Number P01ES028942, granted to Principal Investigators Geoffrey Scott and Paul Sandifer. M. A. Carson, Z. Hart, H. Kelsey, D. E. Porter, and L. Schandera are Community Engagement Core investigators at this Center. Funding for J. Pierce is provided by the NSF (grant number OCE-1841811) and the NIH (P01ES028949) through the Greater Caribbean Center for Ciguatera Research at the Florida Gulf Coast University.
    Keywords: harmful algal blooms ; human health ; pollutants ; ocean health
    Repository Name: Woods Hole Open Access Server
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  • 94
    Publication Date: 2022-07-24
    Description: The availability of dissolved iron (dFe) exerts an important control on primary production. Recent ocean observation programs have provided information on dFe in many parts of the ocean, but knowledge is still limited concerning the rates of processes that control the concentrations and cycling of dFe in the ocean and hence the role of dFe as a determinant of global primary production. We constructed a three-dimensional gridded dataset of oceanic dFe concentrations by using both observations and a simple model of the iron cycle, and estimated the difference of processes among the ocean basins in controlling the dFe distributions. A Green's function approach was used to integrate the observations and the model. The reproduced three-dimensional dFe distribution indicated that iron influx from aeolian dust and from shelf sediment were 7.6 Gmol yr and 4.4 Gmol yr in the Atlantic Ocean and 0.4 Gmol yr and 4.1 Gmol yr in the Pacific Ocean. The residence times were estimated to be 12.2 years in the Atlantic and 80.4 years in the Pacific. These estimates imply large differences in the cycling of dFe between the two ocean basins that would need to be taken into consideration when projecting future iron biogeochemical cycling under different climate change scenarios. Although there is some uncertainty in our estimates, global estimates of iron cycle characteristics based on this approach can be expected to enhance our understanding of the material cycle and hence of the current and future rates of marine primary production.
    Type: Article , PeerReviewed
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  • 95
    Publication Date: 2022-07-22
    Description: Phytoplankton form the base of the pelagic food web in inland waters. Unlike rooted plants with access to nutrients in the sediment, phytoplankton depend on the open water as their sole direct source of minerals. Phytoplankton comprise cyanobacteria and phylogenetically diverse eukaryotic algae that convert light energy and mineral nutrients into organic matter. Many species also exploit the elements and energy within dissolved organic compounds and particles produced in the catchment or within the water. Here, we describe the nutrient requirements of phytoplankton, their different modes of nutrition, the mechanisms they employ to acquire nutrients and the ecological consequences of their varying ability to exploit an often scarce and spatially and temporally variable resource. When nutrients are abundant, often as a result of human disruption of nutrient cycles, phytoplankton productivity, and often biomass, increases to the point that it causes a range of ecological consequences that reduce the value of the water resource for mankind.
    Type: Book chapter , NonPeerReviewed
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  • 96
    Publication Date: 2022-07-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Clark, S., Hubbard, K., Ralston, D., McGillicuddy, D., Stock, C., Alexander, M., & Curchitser, E. Projected effects of climate change on Pseudo-nitzschia bloom dynamics in the Gulf of Maine. Journal of Marine Systems, 230, (2022): 103737, https://doi.org/10.1016/j.jmarsys.2022.103737.
    Description: Worldwide, warming ocean temperatures have contributed to extreme harmful algal bloom events and shifts in phytoplankton species composition. In 2016 in the Gulf of Maine (GOM), an unprecedented Pseudo-nitzschia bloom led to the first domoic-acid induced shellfishery closures in the region. Potential links between climate change, warming temperatures, and the GOM Pseudo-nitzschia assemblage, however, remain unexplored. In this study, a global climate change projection previously downscaled to 7-km resolution for the Northwest Atlantic was further refined with a 1–3-km resolution simulation of the GOM to investigate the effects of climate change on HAB dynamics. A 25-year time slice of projected conditions at the end of the 21st century (2073–2097) was compared to a 25-year hindcast of contemporary ocean conditions (1994–2018) and analyzed for changes to GOM inflows, transport, and Pseudo-nitzschia australis growth potential. On average, climate change is predicted to lead to increased temperatures, decreased salinity, and increased stratification in the GOM, with the largest changes occurring in the late summer. Inflows from the Scotian Shelf are projected to increase, and alongshore transport in the Eastern Maine Coastal Current is projected to intensify. Increasing ocean temperatures will likely make P. australis growth conditions less favorable in the southern and western GOM but improve P. australis growth conditions in the eastern GOM, including a later growing season in the fall, and a longer growing season in the spring. Combined, these changes suggest that P. australis blooms in the eastern GOM could intensify in the 21st century, and that the overall Pseudo-nitzschia species assemblage might shift to warmer-adapted species such as P. plurisecta or other Pseudo-nitzschia species that may be introduced.
    Description: This research was funded by the National Science Foundation (Grant Number OCE-1840381), the National Institute of Environmental Health Sciences (Grant Number 1P01ES028938), the Woods Hole Center for Oceans and Human Health, and the Academic Programs Office of the Woods Hole Oceanographic Institution.
    Keywords: Gulf of Maine ; ROMS ; Pseudo-nitzschia ; Climate change ; Harmful algal blooms
    Repository Name: Woods Hole Open Access Server
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  • 97
    Publication Date: 2022-07-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tarrés, M., Cerdà-Domènech, M., Pedrosa-Pàmies, R., Rumín-Caparrós, A., Calafat, A., Canals, M., & Sanchez-Vidal, A. Particle fluxes in submarine canyons along a sediment-starved continental margin and in the adjacent open slope and basin in the SW Mediterranean Sea. Progress in Oceanography, 203, (2022): 102783, https://doi.org/10.1016/j.pocean.2022.102783.
    Description: Investigating the transfer of particulate matter from the continental shelf to the deep basin is critical to understand the functioning of deep sea ecosystems. In this paper we present novel results on the temporal variability of particle fluxes to the deep in three physiographic domains of a 240 km long margin segment and nearby basin off Murcia and Almeria provinces in the SW Mediterranean Sea, which are submarine canyons forming a rather diverse set (namely Escombreras, Garrucha-Almanzora and Almeria), the adjacent open slope and the deep basin. This margin is located off one of the driest regions in Europe and, therefore, its study may help understanding how mainland aridity translates into the export of particles to deep margin environments. Five mooring lines equipped with currentmeters, turbidity-meters and sediment traps were deployed for one entire annual cycle, from March 2015 to March 2016. We combine oceanographic, hydrological and meteorological data with grain size and bulk elemental data (organic carbon, opal, CaCO3, lithogenic) from the collected sinking particles to understand what drives particle transfers in such an under-studied setting, and to quantify the resulting fluxes and assess their spatio-temporal variability. Weighted total mass fluxes in canyons range from 1.64 g m−2 d−1 in Almeria Canyon to 7.33 g m−2 d−1 in Garrucha-Almanzora Canyon system, which are rather low values compared to other submarine canyons in the Western Mediterranean Sea. This results from the absence of extreme wind-storm events during the investigated time period combined with the reduced sediment input to the inner shelf by river systems in the study area. Our results also show that wind-storms are the main trigger for off-shelf particle transport to the deep margin, both within submarine canyons and over the open slope. The most significant transfer period is associated to a set of north-eastern storms in early spring 2015, when the off-shelf transport likely was promoted by storm-induced downwelling. However, the prevailing oceanographic conditions restricts the advection of water down the canyon heads to a few hundred meters, thus promoting a bottom-detached transport of particles seaward. Overall physiography, canyon head incision into the continental shelf and the distance of the canyon head to the shoreline (e.g. very short in Garrucha Canyon) play a key role in particle trapping capability and, therefore, in easing downslope particle transport. Further, bottom trawling activities around the Garrucha-Almanzora Canyon system, feed a nepheloid layer at depths in excess of 400 m, subsequently enhancing particle fluxes throughout the study period. In contrast, maximum particle fluxes in the deep basin respond to seasonal phytoplankton blooms. Our study shows that particle export from the shallow inner margin to the deep outer margin in sediment-starved settings, even if limited, does occur as dominated by atmosphere and ocean driven short-lived events. However, that export does not reach too far as at several tens of kilometres from the shelf edge advective fluxes are replaced by vertical ones impelled by phytoplankton dynamics.
    Description: This work was supported by research projects NUREIEV (ref. CTM2013-44598-R) and NUREIEVA (ref. CTM2016-75953-C2-1-R). GRC Geociències Marines is funded by the Catalan Government within its excellence research groups program (ref. 2017 SGR 315). M.Tarrés was supported by a FPI grant from Ministerio de Ciencia, Innovación y Universidades of the Spanish Government.
    Keywords: Particle fluxes ; Sediment-starved continental margin ; Submarine canyons ; Open slope ; Deep basin ; Mediterranean Sea
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  • 98
    Publication Date: 2022-07-20
    Description: The Antarctic krill (Euphausia superba Dana) is a keystone species in the Southern Ocean that uses an arsenal of hydrolases for biomacromolecule decomposition to effectively digest its omnivorous diet. The present study builds on a hybrid-assembled transcriptome (13,671 ORFs) combined with comprehensive proteome profiling. The analysis of individual krill compartments allowed detection of significantly more different proteins compared to that of the entire animal (1,464 vs. 294 proteins). The nearby krill sampling stations in the Bransfield Strait (Antarctic Peninsula) yielded rather uniform proteome datasets. Proteins related to energy production and lipid degradation were particularly abundant in the abdomen, agreeing with the high energy demand of muscle tissue. A total of 378 different biomacromolecule hydrolysing enzymes were detected, including 250 proteases, 99 CAZymes, 14 nucleases and 15 lipases. The large repertoire in proteases is in accord with the protein-rich diet affiliated with E. superba’s omnivorous lifestyle and complex biology. The richness in chitin-degrading enzymes allows not only digestion of zooplankton diet, but also the utilization of the discharged exoskeleton after moulting.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 99
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    Elsevier
    In:  EPIC3Journal of Sea Research, Elsevier, 187, pp. 102245, ISSN: 13851101
    Publication Date: 2022-07-15
    Description: Foraminifera nourishing on fresh organic matter often exhibit an epibiotic or even an epizoic lifestyle. This study investigates the colonization of sponges by foraminifera. For this purpose, 12 siliceous sponges of different genera (Asconema, Geodia, Lissodendoryx and Schaudinnia) and order Haplosclerida were collected in 2018 with a ROV in water depths of 223 to 625 m in the Norwegian-Greenland Sea. Sponges were stained with a Rose Bengal/ ethanol mixture to allow a differentiation between foraminifera that had been recently alive and empty tests. Each sponge sample contained 3–42 dead and 1–10 living foraminiferal individuals per cm3 and summarizing up to 78 different taxa on one single sponge (Geodia phlegraei). Even on Geodia barretti, which is able to release barrettin (an alkaloid) to avoid colonialization by other organisms, living foraminiferal individuals (1 ind./cm3) were observed. The highest foraminiferal densities (living and dead individuals) were recorded on Haplosclerida sp. (49 ind./cm3) and Geodia sp. (45 ind./cm3). The lowest densities of foraminifera were found on G. barretti (3–14 ind./cm3) and on Lissodendoryx complicata (9 ind./cm3). The foraminiferal diversity ranges from 7.04 to 17.38 for Fisher α and from 2.40 to 3.33 (Shannon-Wiener (H)S). The highest diversity was found on G. phlegraei and the lowest one on L. complicata. This study is highlighting the ecosystem engineering role of sponges providing niche habitats for a high number of foraminifera.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed , info:eu-repo/semantics/article
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  • 100
    Publication Date: 2022-07-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lefebvre, K., Fachon, E., Bowers, E., Kimmel, D., Snyder, J., Stimmelmayr, R., Grebmeier, J., Kibler, S., Hardison, D., Anderson, D., Kulis, D., Murphy, J., Gann, J., Cooper, D., Eisner, L., Duffy-Anderson, J., Sheffield, G., Pickart, R., Mounsey, A., Willis, M. L., Stabeno, P., & Siddon, E. Paralytic shellfish toxins in Alaskan Arctic food webs during the anomalously warm ocean conditions of 2019 and estimated toxin doses to Pacific walruses and bowhead whales. Harmful Algae, 114, (2022): 102205, https://doi.org/10.1016/j.hal.2022.102205.
    Description: Climate change-related ocean warming and reduction in Arctic sea ice extent, duration and thickness increase the risk of toxic blooms of the dinoflagellate Alexandrium catenella in the Alaskan Arctic. This algal species produces neurotoxins that impact marine wildlife health and cause the human illness known as paralytic shellfish poisoning (PSP). This study reports Paralytic Shellfish Toxin (PST) concentrations quantified in Arctic food web samples that include phytoplankton, zooplankton, benthic clams, benthic worms, and pelagic fish collected throughout summer 2019 during anomalously warm ocean conditions. PSTs (saxitoxin equivalents, STX eq.) were detected in all trophic levels with concentrations above the seafood safety regulatory limit (80 μg STX eq. 100 g−1) in benthic clams collected offshore on the continental shelf in the Beaufort, Chukchi, and Bering Seas. Most notably, toxic benthic clams (Macoma calcarea) were found north of Saint Lawrence Island where Pacific walruses (Odobenus rosmarus) are known to forage for a variety of benthic species, including Macoma. Additionally, fecal samples collected from 13 walruses harvested for subsistence purposes near Saint Lawrence Island during March to May 2019, all contained detectable levels of STX, with fecal samples from two animals (78 and 72 μg STX eq. 100 g−1) near the seafood safety regulatory limit. In contrast, 64% of fecal samples from zooplankton-feeding bowhead whales (n = 9) harvested between March and September 2019 in coastal waters of the Beaufort Sea near Utqiaġvik (formerly Barrow) and Kaktovik were toxin-positive, and those levels were significantly lower than in walruses (max bowhead 8.5 μg STX eq. 100 g−1). This was consistent with the lower concentrations of PSTs found in regional zooplankton prey. Maximum ecologically-relevant daily toxin doses to walruses feeding on clams and bowhead whales feeding on zooplankton were estimated to be 21.5 and 0.7 μg STX eq. kg body weight−1 day−1, respectively, suggesting that walruses had higher PST exposures than bowhead whales. Average and maximum STX doses in walruses were in the range reported previously to cause illness and/or death in humans and humpback whales, while bowhead whale doses were well below those levels. These findings raise concerns regarding potential increases in PST/STX exposure risks and health impacts to Arctic marine mammals as ocean warming and sea ice reduction continue.
    Description: This research was funded by ECOHAB project number NA20NOS4780195 (to KAL and DMA), the North Pacific Research Board (NPRB Arctic Integrated Ecosystem Research Program), the Bureau of Ocean and Energy Management (BOEM), the National Science Foundation (NSF) Office of Polar Programs (OPP-1823002 and OPP-1733564), the National Oceanic and Atmospheric Administration (NOAA) Arctic Research program (through the Cooperative Institute for the North Atlantic Region [CINAR; Grants NA14OAR4320158 and NA19OAR4320074] and the Cooperative Institute for the North Atlantic Region NOAA CINAR Grant # 22309.07 UMCES [to JG at the University of Maryland Center for Environmental Science]), the Alaska Sustainable Salmon Fund project #51002, the Alaska Department of Fish and Game, the North Slope Borough Department of Wildlife management, the U.S. National Park Service Shared Beringian Heritage Program grant # P21AC12214-00, and NOAA's Northwest Fisheries Science Center (NWFSC) and Alaska Fisheries Science Center (AFSC). We also thank the RACE Groundfish and Shellfish Assessment Programs of the NOAA Fisheries AFSC and the crew of the F/V Knight for their assistance in securing additional benthic biological samples used in this study. Collection of harvested bowhead whale samples was conducted under NMFS Permit #21386. Collection of harvested walrus samples was conducted under US Fish and Wildlife permit #MA-041309-5. This is ECOHAB publication #1000.
    Keywords: harmful algal blooms ; algal toxins ; trophic transfer ; saxitoxin ; paralytic shellfish poisoning ; marine mammals
    Repository Name: Woods Hole Open Access Server
    Type: Article
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