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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Price, Nichole N; Hamilton, Scott L; Tootell, Jesse S; Smith, Jennifer E (2011): Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda. Marine Ecology Progress Series, 440, 67-78, https://doi.org/10.3354/meps09309
    Publication Date: 2023-07-05
    Description: Ocean acidification (OA), resulting from increasing dissolved carbon dioxide (CO2) in surface waters, is likely to affect many marine organisms, particularly those that calcify. Recent OA studies have demonstrated negative and/or differential effects of reduced pH on growth, development, calcification and physiology, but most of these have focused on taxa other than calcareous benthic macroalgae. Here we investigate the potential effects of OA on one of the most common coral reef macroalgal genera,Halimeda. Species of Halimeda produce a large proportion of the sand in the tropics and are a major contributor to framework development on reefs because of their rapid calcium carbonate production and high turnover rates. On Palmyra Atoll in the central Pacific, we conducted a manipulative bubbling experiment to investigate the potential effects of OA on growth, calcification and photophysiology of 2 species of Halimeda. Our results suggest that Halimeda is highly susceptible to reduced pH and aragonite saturation state but the magnitude of these effects is species specific. H. opuntiasuffered net dissolution and 15% reduction in photosynthetic capacity, while H. taenicola did not calcify but did not alter photophysiology in experimental treatments. The disparate responses of these species to elevated CO2 partial -pressure (pCO2) may be due to anatomical and physiological differences and could represent a shift in their relative dominance in the face of OA. The ability for a species to exert biological control over calcification and the species specific role of the carbonate skeleton may have important implications for the potential effects of OA on ecological function in the future.
    Keywords: Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Chlorophyta; Coast and continental shelf; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Halimeda opuntia; Halimeda taenicola; Laboratory experiment; Macroalgae; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Plantae; Primary production/Photosynthesis; Single species; Temperate
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 2
    Publication Date: 2023-12-29
    Description: In Tasmania, Australia, the government's response to range-extending, barren-forming longspined sea urchin (Centrostephanus rodgersii) includes rebuilding of southern rock lobster (Jasus edwardsii) stocks to increase predation. But lobster preference for native species and continued barren expansion challenge the control efficacy. Therefore, this study aimed to determine the impact of lobster predation on C. rodgersii in different coastal habitats using a multi-method dietary analysis comprising 1) stomach contents analysis, 2) targeted DNA detection of prey species in faecal samples and 3) stable isotope analysis (d13C and d15N). The dataset contains diet information from 64 southern rock lobster (Jasus edwardsii) from five sites (four habitat types) in eastern Tasmania, Australia. Investigated prey species included: range-extending longspined sea urchins (Centrostephanus rodgersii), Shortspined sea urchin (Heliocidaris erythrogramma), periwinkle (Lunella undulata) and blacklip abalone (Haliotis rubra).
    Keywords: Cape Paul; CapePaul_2020; Carapace, length; Carbon and hydrogen and nitrogen and sulfur and oxygen (CHNSO) isotope elemental analyzer, Elementar, vario PYRO cube; coupled with Isotope ratio mass spectrometer (IRMS), Elementar, IsoPrime100; Centrostephanus rodgersii; Conservation status; Country; Crayfish Point; CrayfishPoint_2020; DATE/TIME; DNA barcoding; Elephant Rock; ElephantRock_2020; Event label; Fortescue; Fortescue_2020; Grazing impact; isotope analysis; Jasus edwardsii; Jasus edwardsii, stomach content; Jasus edwardsii, δ13C; Jasus edwardsii, δ15N; LATITUDE; Lobster trap, Manufacturer unknown, custom built [Pot dimension 80x80x45 cm; Mesh size 3x3 cm; top entrance circle 30 cm]; Location; LONGITUDE; North Bay; NorthBay_2020; Polymerase chain reaction (PCR); Prey, DNA present in faeces; range extension; Sample code/label; Sex; Size group description; Species; Species, unique identification (URI); spiny lobster; Stereo microscope, Leica, MZ12.5; coupled with Digital microscope camera, Leica, DFC450; stomach content analysis
    Type: Dataset
    Format: text/tab-separated-values, 1258 data points
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  • 3
    Publication Date: 2023-12-31
    Description: Details of individual southern rock lobster (Jasus edwardsii) samples and their respective delta carbon-13 (δC13) and delta nitrogen-15 (δN15) values from a captive feeding experiment (Smith et al., 2023). Lobsters were collected by divers as puerulus larvae at Iron Pot, Tasmania at 9 m depth and raised in circular flow through tanks at the Institute for Marine and Antarctic Studies, Taroona, Tasmania. Samples include those from dorsal muscle, dorsal carapace, leg muscle and leg exoskeleton. Lobsters were in three diet treatments and were sampled at 0, 4, 8, 12, and 18 months after a diet change. The experiment took place in Hobart, Tasmania, Australia between June 2020 and December 2021. The experiment was used to determine trophic discrimination factors for stable isotope analysis of lobsters, and investigate variability of stable isotope signatures over time. Isotope values were analysed using flash combustion isotope ratio mass spectrometry.
    Keywords: Carapace, length; Carbon and hydrogen and nitrogen and sulfur and oxygen (CHNSO) isotope elemental analyzer, Elementar, vario PYRO cube; coupled with Isotope ratio mass spectrometer (IRMS), Elementar, IsoPrime100; Centrostephanus rodgersii; Comment; Country; DATE/TIME; Date/time end; Date/time end, experiment; Date/time start, experiment; Event label; Individual code; IronPot_Puerulus_2018; Iron Pot, Tasmania; Jasus edwardsii; Jasus edwardsii, δ13C; Jasus edwardsii, δ15N; Laboratory; LATITUDE; Latitude 2; Location; LONGITUDE; Longitude 2; Outcome; range extension; range shift; Sample code/label; Sample code/label 2; Sampling date; SCUBA-DIVE; Sex; Species; Tasmania; Tissue type; Treatment: food; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 5309 data points
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  • 4
    Publication Date: 2023-12-31
    Description: Details of individual prey animal samples and respective delta carbon-13 (dC13) and delta nitrogen-15 (dN15) values from a captive feeding experiment of southern rock lobsters (Jasus edwardsii) (Smith et al., 2023). Prey animal species include: longspined sea urchin (Centrostephanus rodgersii) collected by Scuba diving at Fortescue Bay, and blue mussel (Mytilus galloprovincialis) and Australian sardine (Sardinops saga) purchased from Spring Bay seafoods in Tasmania. The experiment took place in Hobart, Tasmania, Australia between June 2020 and December 2021. The experiment was used to determine trophic discrimination factors for stable isotope analysis of lobsters, and investigate variability of stable isotope signatures over time. Isotope values were analysed using flash combustion isotope ratio mass spectrometry.
    Keywords: Carbon and hydrogen and nitrogen and sulfur and oxygen (CHNSO) isotope elemental analyzer, Elementar, vario PYRO cube; coupled with Isotope ratio mass spectrometer (IRMS), Elementar, IsoPrime100; Centrostephanus rodgersii; Collected from suspended long-lines in aquaculture farm; Comment; Country; DATE/TIME; Date/time end; Event label; FortescueBay_Centro_2020; Fortescue Bay, Tasmania; Individual code; Jasus edwardsii; Laboratory experiment; LATITUDE; Location; LONGITUDE; range extension; range shift; Sample code/label; SCUBA-DIVE; Species, unique identification; Species, unique identification (URI); SpringBay_Mytilus_2020; Spring Bay, Tasmania; Tasmania; Tissue type; δ13C; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 185 data points
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  • 5
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    Unknown
    PANGAEA
    In:  Supplement to: Johnson, Maggie Dorothy; Price, Nichole N; Smith, Jennifer E (2014): Contrasting effects of ocean acidification on tropical fleshy and calcareous algae. PeerJ, 2, e411, https://doi.org/10.7717/peerj.411
    Publication Date: 2024-03-15
    Description: Despite the heightened awareness of ocean acidification (OA) effects on marine organisms, few studies empirically juxtapose biological responses to CO2 manipulations across functionally distinct primary producers, particularly benthic algae. Algal responses to OA may vary because increasing CO2 has the potential to fertilize photosynthesis but impair biomineralization. Using a series of repeated experiments on Palmyra Atoll, simulated OA effects were tested across a suite of ecologically important coral reef algae, including five fleshy and six calcareous species. Growth, calcification and photophysiology were measured for each species independently and metrics were combined from each experiment using a meta-analysis to examine overall trends across functional groups categorized as fleshy, upright calcareous, and crustose coralline algae (CCA). The magnitude of the effect of OA on algal growth response varied by species, but the direction was consistent within functional groups. Exposure to OA conditions generally enhanced growth in fleshy macroalgae, reduced net calcification in upright calcareous algae, and caused net dissolution in CCA. Additionally, three of the five fleshy seaweeds tested became reproductive upon exposure to OA conditions. There was no consistent effect of OA on algal photophysiology. Our study provides experimental evidence to support the hypothesis that OA will reduce the ability of calcareous algae to biomineralize. Further, we show that CO2 enrichment either will stimulate population or somatic growth in some species of fleshy macroalgae. Thus, our results suggest that projected OA conditions may favor non-calcifying algae and influence the relative dominance of fleshy macroalgae on reefs, perpetuating or exacerbating existing shifts in reef community structure.
    Keywords: Acanthophora spicifera; Alkalinity, total; Alkalinity, total, standard error; Aragonite saturation state; Aragonite saturation state, standard error; Avrainvillea amadelpha; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard error; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Caulerpa serrulata; Chlorophyta; Coast and continental shelf; Coulometric titration; Dichotomaria marginata; Dictyota bartayresiana; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Galaxaura rugosa; Growth/Morphology; Growth rate; Growth rate, standard error; Halimeda opuntia; Halimeda taenicola; Hypnea pannosa; Laboratory experiment; Lithophyllum prototypum; Lithophyllum sp.; Macroalgae; Maximal electron transport rate, relative; Maximal electron transport rate, relative, standard error; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Photoinhibition; Photoinhibition, standard error; Photosynthetic efficiency; Photosynthetic efficiency, standard error; Plantae; Potentiometric titration; Primary production/Photosynthesis; Replicates; Rhodophyta; Run Number; Salinity; Salinity, standard error; Single species; Species; Table; Temperature, water; Treatment; Tropical
    Type: Dataset
    Format: text/tab-separated-values, 2271 data points
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  • 6
    Publication Date: 2024-03-15
    Description: Ocean acidification (OA) is likely to differentially affect the biology and physiology of calcifying and non-calcifying taxa, thereby potentially altering key ecological interactions (e.g., facilitation, competition, predation) in ways that are difficult to predict from single-species experiments. We used a two-factor experimental design to investigate how multispecies benthic assemblages in southern California kelp forests respond to OA and grazing by the purple sea urchin, Strongylocentrotus purpuratus. Settlement tiles accrued natural mixed assemblages of algae and invertebrates in a kelp forest off San Diego, CA for one year before being exposed to OA and grazing in a laboratory experiment for two months. Space occupying organisms were identified and pooled into six functional groups: calcified invertebrates, non-calcified invertebrates, calcified algae, fleshy algae, sediment, and bare space for subsequent analyses of community structure. Interestingly, communities that developed on separate tile racks were unique, despite being deployed close in space, and further changes in community structure in response to OA and grazing depended on this initial community state. On Rack 1, we found significant effects of both pCO2 and grazing with elevated pCO2 increasing cover of fleshy algae, but sea urchin grazers decreasing cover of fleshy algae. On Rack 2, we found a 35% higher percent cover of sediment on tiles reared in ambient pCO2 but observed 27% higher cover of bare space in the high pCO2 conditions. On Rack 3, we found an average of 45% lower percent cover of calcified sessile invertebrates at ambient pCO2 than in high pCO2 treatments on Rack 3. Net community calcification was 137% lower in elevated pCO2 treatments. Kelp sporophyte densities on tiles without urchins were 74% higher than on tiles with urchins and kelp densities were highest in the elevated pCO2 treatment. Urchin growth and grazing rates were 49% and 126% higher under ambient than high pCO2 conditions. This study highlights consistent negative impacts of OA on community processes such as calcification and grazing rates, even though impacts on community structure were highly context-dependent.
    Keywords: Alkalinity, total; Aragonite saturation state; Behaviour; Benthos; Bicarbonate ion; Calcification/Dissolution; Calcification rate; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Community composition and diversity; Coverage; Dry mass; Entire community; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Grazing rate; Identification; Individuals; Laboratory experiment; Mesocosm or benthocosm; Mias_Reef; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric; Potentiometric titration; Rocky-shore community; Salinity; Temperate; Temperature, water; Treatment; Type
    Type: Dataset
    Format: text/tab-separated-values, 1598 data points
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  • 7
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Aragonite saturation state; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyta; Coast and continental shelf; DATE/TIME; DEPTH, water; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Halimeda opuntia; Halimeda taenicola; Laboratory experiment; LATITUDE; LONGITUDE; Macroalgae; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Plantae; Potentiometric open-cell titration; Salinity; Single species; Site; SOMMA autoanalyzer; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 273 data points
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  • 8
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Alkalinity, total, standard error; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Buoyant weighing technique according to Davies (1989); Calcification/Dissolution; Calcification rate of calcium carbonate; Calcite saturation state; Calcite saturation state, standard deviation; Calculated; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard error; Chlorophyta; Coast and continental shelf; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Halimeda opuntia; Halimeda opuntia, segements lost; Halimeda opuntia, weight, dry; Halimeda opuntia tips; Halimeda taenicola; Halimeda taenicola, segements lost; Halimeda taenicola, weight, dry; Halimeda taenicola tips; Initial slope of rapid light curve; Laboratory experiment; Macroalgae; Maximal electron transport rate, relative; PAM (PhytoPAM, Phyto-ED Walz, PPAA0138); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Photoinhibition; Plantae; Potentiometric open-cell titration; Primary production/Photosynthesis; Ratio; Salinity; Salinity, standard error; see reference(s); Shed rate; Single species; SOMMA autoanalyzer; Species; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 672 data points
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  • 9
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    Unknown
    PANGAEA
    In:  Supplement to: Johnson, Maggie Dorothy; Comeau, Steeve; Lantz, Coulson A; Smith, Jennifer E (2017): Complex and interactive effects of ocean acidification and temperature on epilithic and endolithic coral-reef turf algal assemblages. Coral Reefs, 36(4), 1059-1070, https://doi.org/10.1007/s00338-017-1597-2
    Publication Date: 2024-03-15
    Description: Turf algal assemblages are ubiquitous primary producers on coral reefs, but little is known about the response of this diverse group to ocean acidification (OA) across different temperatures. We tested the hypothesis that CO2 influences the functional response of epilithic and endolithic turf assemblages to increasing temperature. Replicate carbonate plugs covered by turf were collected from the reef and exposed to ambient and high pCO2 (1000 µatm) conditions for 3 weeks. Each pCO2 treatment was replicated across six temperatures (24.0-31.5 °C) that spanned the full seasonal temperature range on a fringing reef in Moorea, French Polynesia, and included one warming treatment (3 °C above daily average temperatures). Temperature and CO2 enrichment had complex, and sometimes interactive, effects on turf metabolism and growth. Photosynthetic and respiration rates were enhanced by increasing temperature, with an interactive effect of CO2 enrichment. Photosynthetic rates were amplified by high CO2 in the warmest temperatures, while the increase in respiration rates with temperature were enhanced under ambient CO2. Epilithic turf growth rates were not affected by temperature, but increased in response to CO2 enrichment. We found that CO2 and temperature interactively affected the endolithic assemblage, with the highest growth rates under CO2 enrichment, but only at the warmest temperatures. These results demonstrate how OA may influence algal physiology and growth across a range of ecologically relevant temperatures, and indicate that the effects of CO2 enrichment on coral-reef turf assemblages can be temperature dependent. The complex effects of CO2 enrichment and temperature across a suite of algal responses illustrates the importance of incorporating multiple stressors into global change experiments.
    Keywords: Alkalinity, total; Alkalinity, total, standard error; Aragonite saturation state; Aragonite saturation state, standard error; Benthos; Bicarbonate ion; Biomass; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Cooks_Bay_Moorea; Entire community; EXP; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gross photosynthesis rate, oxygen; Growth/Morphology; Laboratory experiment; Net photosynthesis rate, oxygen; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Primary production/Photosynthesis; Respiration; Respiration rate, oxygen; Rocky-shore community; Salinity; South Pacific; Temperature; Temperature, water; Temperature, water, standard error; Treatment; Tropical; Type
    Type: Dataset
    Format: text/tab-separated-values, 336 data points
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  • 10
    Publication Date: 2022-10-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sandin, S. A., Alcantar, E., Clark, R., de Leon, R., Dilrosun, F., Edwards, C. B., Estep, A. J., Eynaud, Y., French, B. J., Fox, M. D., Grenda, D., Hamilton, S. L., Kramp, H., Marhaver, K. L., Miller, S. D., Roach, T. N. F., Seferina, G., Silveira, C. B., Smith, J. E., Zgliczynski, B. J., & Vermeij, M. J. A. Benthic assemblages are more predictable than fish assemblages at an island scale. Coral Reefs, 41, (2022.): 1031–1043, https://doi.org/10.1007/s00338-022-02272-5.
    Description: Decades of research have revealed relationships between the abundance of coral reef taxa and local conditions, especially at small scales. However, a rigorous test of covariation requires a robust dataset collected across wide environmental or experimental gradients. Here, we surveyed spatial variability in the densities of major coral reef functional groups at 122 sites along a 70 km expanse of the leeward, forereef habitat of Curaçao in the southern Caribbean. These data were used to test the degree to which spatial variability in community composition could be predicted based on assumed functional relationships and site-specific anthropogenic, physical, and ecological conditions. In general, models revealed less power to describe the spatial variability of fish biomass than cover of reef builders (R2 of best-fit models: 0.25 [fish] and 0.64 [reef builders]). The variability in total benthic cover of reef builders was best described by physical (wave exposure and reef relief) and ecological (turf algal height and coral recruit density) predictors. No metric of anthropogenic pressure was related to spatial variation in reef builder cover. In contrast, total fish biomass showed a consistent (albeit weak) association with anthropogenic predictors (fishing and diving pressure). As is typical of most environmental gradients, the spatial patterns of both fish biomass density and reef builder cover were spatially autocorrelated. Residuals from the best-fit model for fish biomass retained a signature of spatial autocorrelation while the best-fit model for reef builder cover removed spatial autocorrelation, thus reinforcing our finding that environmental predictors were better able to describe the spatial variability of reef builders than that of fish biomass. As we seek to understand spatial variability of coral reef communities at the scale of most management units (i.e., at kilometer- to island-scales), distinct and scale-dependent perspectives will be needed when considering different functional groups.
    Description: This research and the larger efforts of Blue Halo Curacao were supported by funding from the Waitt Institute and with permissions from the Government of Curacao, Ministry of Health, Environment, and Nature. Field logistics were further supported by the Waitt Institute vessel crew, CARMABI Foundation, The Dive Shop Curacao, and Dive Charter Curacao.
    Keywords: Community ecology ; Oceanography ; Anthropogenic impacts ; Spatial variation ; Spatial autocorrelation
    Repository Name: Woods Hole Open Access Server
    Type: Article
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