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  • Articles  (66)
  • Rhizosphere  (66)
  • Springer  (66)
  • Geosciences  (66)
  • 1
    Electronic Resource
    Electronic Resource
    Nitrification of ammonium in different components of a flooded rice soil system (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 321-326 
    Details
    ISSN: 1432-0789
    Keywords: Nitrification ; Flooded rice soils ; Rhizosphere ; Rice variety ; Crop growth stage ; Organic amendment
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Nitrification associated with the various components [subsurface soil from unplanted and planted (rhizosphere) fields, standing water and surface soil from planted and unplanted fields and leaf sheath suspensions] of submerged rice paddies was examined in incubation experiments with solutions inoculated with soil or water samples. Substantial nitrification occurred in all samples, standing water and surface soil samples in particular, during their 40-day incubation with NH 4 + −N. Almost all the NH 4 + −N, disappeared during incubation with standing water, was recovered as NO inf3 sup- −N. This, compared to 70–80% from all soil samples and only 29% from leaf sheath suspensions. Significant loss of nitrogen, especially from leaf sheath suspensions, is probably due to nitrification-denitrification as evidenced by its complete recovery in the presence of N-Serve. Nitrification potential of the soil and water samples varied with the crop growth stage and was more pronounced at tillering and panicle inititation stages than at other stages. Nitrification potential of samples from green-manure-amended plots was distinctly less than that of samples from control and urea-amended plots. Most probable number (MPN) estimates of ammonium-oxidizing bacteria were always higher in surface soil in both planted and unplanted plots at all stages of crop growth.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00335961
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  • 2
    Electronic Resource
    Electronic Resource
    Estimating microbial biomass N in soils with and without living roots: Limitations of a pre-extraction step (1996)
    Springer
    Biology and fertility of soils 21 (1996), S. 314-318 
    Details
    ISSN: 1432-0789
    Keywords: Microbial biomass N ; Fumigation-extraction ; Pre-extraction ; Rhizosphere ; Roots ; Net-closed soil containers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Special net-closed soil containers were used in a pot experiment with low and high plant densities to give soil samples with and without roots. Soils from the containers were analysed either by the fumigation-extraction method or by a modified procedure starting with a pre-extraction and sieving step to remove plant roots from the samples. In the extracts NO 3 - -N, NH 4 + -N, organic N, and total N were measured. Microbial biomass N was calculated from the differences in total N in fumigated and unfumigated soils. Different plant densities had almost no influence on the values of the N compounds using either method. In soils with roots, significantly more organic N (and total N) was found by the fumigation-extraction method compared to soils without roots while no differences were obtained using pre-extractions and sieving. Though the organic N content in pre-extracts from soils with roots was significantly higher than from soils without roots, the NO 3 - -N and NH 4 + -N content was lower. Significant differences in biomass N in soils with and without roots were found only with the fumigation-extraction method. Biomass N levels calculated using the results after pre-extraction and sieving were about 50% lower than levels detected using fumigation-extraction alone. With the use of special net-closed soil containers, not only were soil samples produced with and without roots, but it was also possible to induce a rhizophere in the soils. A comparison of the two methods using these soils clearly demonstrated that the method used has profound influence on the final biomass N results. While higher “biomass” levels were found by fumigation-extraction in soils with roots, because root N becomes extractable after fumigation, the use of a pre-extraction and a sieving step may underestimate the total biomass N content due to the pre-extraction of microbial N (especially from rhizosphere microorganisms) from the sample. Nevertheless, pre-extraction and sieving followed by fumigation-extraction does seem to be the preferable method for biomass N measurement in comparative studies, because in most cases only minor errors will occur.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00334909
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  • 3
    Electronic Resource
    Electronic Resource
    Nitrification and denitrification in the rhizosphere of rice: the detection of processes by a new multi-channel electrode (2000)
    Springer
    Biology and fertility of soils 31 (2000), S. 427-435 
    Details
    ISSN: 1432-0789
    Keywords: Key words Rice ; Nitrification ; Denitrification ; Rhizosphere ; Microelectrode
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  N turnover in flooded rice soils is characterized by a tight coupling between nitrification and denitrification. Nitrification is restricted to the millimetre-thin oxic surface layer while denitrification occurs in the adjacent anoxic soil. However, in planted rice soil O2 released from the rice roots may also support nitrification within the otherwise anoxic bulk soil. To locate root-associated nitrification and denitrification we constructed a new multi-channel microelectrode that measures NH4 +, NO2 –, and NO3 – at the same point. Unfertilized, unplanted rice microcosms developed an oxic-anoxic interface with nitrification taking place above and denitrification below ca. 1 mm depth. In unfertilized microcosms with rice plants, NH4 +, NO2 – and NO3 – could not be detected in the rhizosphere. Assimilation by the rice roots reduced the available N to a level where nitrification and denitrification virtually could not occur. However, a few hours after injecting (NH4)2HPO4 or urea, a high nitrification activity could be detected in the surface layer of planted microcosms and in a depth of 20–30 mm in the rooted soil. O2 concentrations of up to 150 μM were measured at the same depth, indicating O2 release from the rice roots. Nitrification occurred at a distance of 0–2 mm from the surface around individual roots, and denitrification occurred at a distance of 1.5–5.0 mm. Addition of urea to the floodwater of planted rice microcosms stimulated nitrification. Transpiration of the rice plants caused percolation of water resulting in a mass flow of NH4 + towards the roots, thus supporting nitrification.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003749900190
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  • 4
    Electronic Resource
    Electronic Resource
    Measurement of pH at the root surface of red clover (Trifolium pratense) grown in soils differing in proton buffer capacity (1988)
    Springer
    Biology and fertility of soils 5 (1988), S. 295-298 
    Details
    ISSN: 1432-0789
    Keywords: pH measurement ; Rhizosphere ; SB electrodes ; Proton secretion of roots ; Red clover ; Rhizotrone ; Rhizobium spp.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Measurements of pH were made at the root surface of Trifolium pratense, using Sb electrodes. Nodulated plants were grown in rhizotrones on a sandy soil free of carbonate and on a clay soil rich in carbonate. In the sandy soil, pH at the surface of root laterals was about 1 unit lower than in the bulk soil. The lowest pH values were found at the root tips. In the calcareous soil, pH measured at the root surface did not differ from pH in the bulk soil. This soil had a much higher H+ buffer capacity than the sandy soils. It seems likely that H+ ions excreted from the roots grown in the calcareous soil were directly neutralized by soil carbonate.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00262134
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  • 5
    Electronic Resource
    Electronic Resource
    Azospirillum — plant root associations: A review (1989)
    Springer
    Biology and fertility of soils 8 (1989), S. 356-368 
    Details
    ISSN: 1432-0789
    Keywords: Plant-root associations ; Azospirillum spp ; Rhizosphere ; Nitrogen fixation ; Acetylene reduction assay (ARA) ; Phytohormones
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Bacteria of the genus Azospirillum are extensively studied for their plant-growth promoting effect following inoculation. Physiological and biochemical studies of these diazotrophic bacteria are now benefiting from recent breakthroughs in the development of genetic tools for Azospirilum. Moreover, the identification and cloning of Azospirillum genes involved in N2 fixation, plant interaction, and phytohormone production have given new life to many research projects on Azospirillum. The finding that Azospirillum genes can complement specific mutations in other intensively studied rhizosphere bacteria like Rhizobia will certainly trigger the exploration of new areas in rhizosphere biology. Therefore a review of the Azospirillum-plant interactions is particularly timely.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00263169
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  • 6
    Electronic Resource
    Electronic Resource
    Denitrification in the rhizosphere of plants with inherently different aerenchyma formation: Wheat (Triticum aestivum) and rice (Oryza sativa) (1990)
    Springer
    Biology and fertility of soils 9 (1990), S. 215-219 
    Details
    ISSN: 1432-0789
    Keywords: Denitrification ; Air-filled porosity ; Rhizosphere ; Aerenchyma ; Rice ; Wheat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Denitrification in the rhizosphere of wheat and rice was studied in relation to aerenchyma formation. Seedlings were grown in quartz silt amended with mineral nutrients at given bulk densities and water tensions. In adventitious wheat roots the formation of cortical lacunae was strongly dependent on soil aeration. Growing the wheat plants in dry (−20 kPa) and moist substrate (−2 kPa) established aerenchyma contents of 3% and 15%, respectively. Denitrification was measured after the introduction of equal moisture levels in the substrates of both treatments. The higher aerenchyma content of roots pregrown in the wetter substrate did not counteract denitrification in the rhizosphere which had doubled in this treatment. In contrast to the unspecific lysis of cortical cell walls, the well organized formation of aerenchyma in rice roots was independent of soil aeration. Root porosity averaged 14%. As in wheat, it was not related to denitrification. However, the level of denitrification per mg of root dry matter was about four times lower than that of wheat. The addition of decomposable organic matter (cellulose) to the substrate stimulated aerenchyma formation in rice and considerably increased denitrification. The results suggest that denitrification in the rhizosphere is independent of aerenchyma formation.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00336228
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  • 7
    Electronic Resource
    Electronic Resource
    Chitinolytic and proteolytic activity of streptomycetes isolated from root-free soil, rhizosphere and mycorrhizosphere of pine (Pinus sylvestris L.) (1990)
    Springer
    Biology and fertility of soils 9 (1990), S. 268-272 
    Details
    ISSN: 1432-0789
    Keywords: Streptomycetes ; Chitinolytic ; Proteolytic activity ; Soil ; Pine roots ; Rhizosphere ; Pinus sylvestris
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary We tested 75 strains of Streptomyces spp. (25 taken from each environment of soil, rhizosphere, and mycorrhizosphere of pine, Pinus sylvestris L.) and all exhibited chitinolytic activity and hydrolysed gelatine and sodium caseinate in agar media. Enrichment of these media with glucose and NH4NO3 caused induction or stimulation of proteolytic Streptomyces spp. strains (80%) derived from root-free soil; inhibition of this activity was observed in most strains (92%) isolated from the root zone. The post-culture liquids of the rhizosphere strains cultured in the absence of glucose revealed a significantly higher proteolytic activity than those obtained from the root-free soil. The addition of glucose to the medium stimulated proteolytic activity in the post-culture broth of Streptomyces strains derived from soil and the mycorrhizosphere.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00336238
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  • 8
    Electronic Resource
    Electronic Resource
    Methanotrophic bacteria in the rhizosphere of rice microcosms and their effect on porewater methane concentration and methane emission (1995)
    Springer
    Biology and fertility of soils 20 (1995), S. 93-100 
    Details
    ISSN: 1432-0789
    Keywords: Wetland rice ; Rhizosphere ; Gas diffusion probe ; Methane profiles ; Methane oxidation ; Microcosms
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract CH4 emission from irrigated rice field is one of the major sources in the global budget of atmoshperic CH4. Rates of CH4 emission depend on both CH4 production in anoxic parts of the soil and on CH4 oxidation at oxic-anoxic interfaces. In the present study we used planted and unplanted rice microcosms and characterized them by numbers of CH4-oxidizing bacteria (MOB), porewater CH4 and O2 concentrations and CH4 fluxes. Plant roots had a stimulating effect on both the number of total soil bacteria and CH4-oxidizing bacteria as determined by fluorescein isothiocyanate fluorescent staining and the most probable number technique, respectively. In the rhizosphere and on the root surface CH4-oxidizing bacteria were enriched during the growth period of tice, while their numbers remained constant in unplanted soils. In the presence of rice plants, the porewater CH4 concentration was significantly lower, with 0.1–0.4mM CH4, than in unplanted microcosms, with 0.5–0.7mM CH4. O2 was detected at depths of up to 16 mm in planted microcosms, whereas it had disappeared at a depth of 2 mm in the unplanted experiments. CH4 oxidation was determined as the difference between the CH4 emission rates under oxic (air) and anoxic (N2) headspace, and by inhibition experiments with C2H2. Flux measurements showed varying oxic emission rates of between 2.5 and 29.0 mmol CH4m-2 day-1. An average of 34% of the anoxically emitted CH4 was oxidized in the planted microcosms, which was surprisingly constant. The rice rhizosphere appeared to be an important oxic-anoxic interface, significantly reducing CH4 emission.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00336586
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  • 9
    Electronic Resource
    Electronic Resource
    Gram-negative bacterial flora on the root surface of wheat (Triticum aestivum) grown under different soil conditions (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 273-281 
    Details
    ISSN: 1432-0789
    Keywords: Key words Wheat ; (Triticum aestivum) ; Rhizosphere ; Soil microflora ; Gram-negative bacteria ; API 20NE ; Flavobacterium spp. ; Cytophaga
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We identified 161 Gram-negative bacterial strains isolated from the root surface of wheat grown under different soil conditions. The strains were divided into seven groups based on major morphological and physiological properties. Taxonomic allocation of the groups was verified by guanine+cytosine contents of DNA. Except for one group, which may be assumed to include bacteria belonging to the genera Flavobacterium and Cytophaga, the various groups were taxonomically united. The distribution of the groups changed with soil improvement. Pseudomonads predominated in unimproved soil, but Flavobacterium and Cytophaga spp. were predominant in the most improved soil. As all the strains were non-fermentative by Hugh and Leifson‘s test, API 20NE identification was applied. However, many strains were misidentified by this system, especially in the Flavobacterium and Cytophaga spp. group. For ecological studies, the strains were classified to species level by the API 20 NE system and by the results of a combination of guanine+cytosine (mol%) and isoprenoid quinone data. The pattern of distribution of the bacteria on the root surface of wheat varied at species level within one genus depending on soil conditions.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00335955
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  • 10
    Electronic Resource
    Electronic Resource
    Endomycorrhizae in a newly cultivated acidic meadow: Effects of three years of barley cropping, tillage, lime, and phosphorus on root colonization and soil infectivity (1996)
    Springer
    Biology and fertility of soils 21 (1996), S. 160-165 
    Details
    ISSN: 1432-0789
    Keywords: Key words Hordeum vulgare ; Agricultural ecosystem ; Acidic soil ; Soil infectivity ; Endomycorrhizae ; Reduced tillage ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The dynamics of mycorrhizae under disturbance created by crop production is not well understood. A 3-year experiment was undertaken on a nutrient-poor and acidic land that had last been cultivated in the early 1970s. We observed the effects of cropping spring barley (Hordeum vulgare L.) under four P-fertilizer levels and four levels of lime, in a minimum (rototillage), a reduced (chisel), or a conventional tillage system, on the mycorrhizal receptiveness of the host (maximum level of mycorrhizal colonization, as measured at harvest) and soil infectivity most probable number method. The host receptiveness decreased with time, while crop yields and soil infectivity increased simultaneously with time. Liming increased mycorrhizal colonization of barley roots and soil infectivity. P additions decreased root colonization but did not significantly affect the most probable number values. Slightly higher soil infectivity estimates were found under reduced tillage.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00335928
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  • 11
    Electronic Resource
    Electronic Resource
    Solubilization of hydroxyapatite by Enterobacter agglomerans and cloned Escherichia coli in culture medium (1997)
    Springer
    Biology and fertility of soils 24 (1997), S. 347-352 
    Details
    ISSN: 1432-0789
    Keywords: Key words Phosphate-solubilizing bacteria ; Hydroxyapatite ; Enterobacter agglomerans ; Organic acids ; Phosphate-solubilizing genes ; Rhizosphere ; Wheat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Phosphate-solubilizing bacteria (PSB) possessing the ability to solubilize insoluble inorganic phosphate were isolated from the rhizosphere soil of wheat. A laboratory study was conducted to investigate the solubilization of phosphate by a known PSB, Enterobacter agglomerans, and by a genetically manipulated bacterium, Escherichia coli. A second laboratory study investigated the release of P from E. agglomerans compared with known acids. For the first laboratory study, a cosmid (pHC79) library of phosphate-solubilizing gene(s) from E. agglomerans chromosome DNA was constructed in E. coli JM109. The clone JM109 (pKKY) showing phosphate solubilization properties was screened on standard medium containing hydroxyapatite (HY). The P concentration significantly increased at 5 and 10 days for JM109 (pKKY) compared with JM109 (pHC79), the control. Although the P concentration increased, there was no significant change in their pHs. Furthermore, an increase in colony-forming units (CFUs) was seen at 5 and 10 days for JM109 (pKKY) but not for JM109 (pHC79). Artificial acidification of the culture medium with HCl, citric acid, oxalic acid, and lactic acid was achieved by shaking for 48h. Acidification with these selected acids solubilized more HY than E. agglomerans growing for 42h at similar pHs. However, a high P concentration was measured in culture medium with E. agglomerans growing for 84h despite similar pHs. Our results suggest that acid production may play an important role in HY solubilization, but is not the sole reason for the increase in P concentration in culture medium.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740050256
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  • 12
    Electronic Resource
    Electronic Resource
    Relative importance of motility and antibiosis in the rhizoplane competence of a biocontrol agent Pseudomonas fluorescens MelRC2Rif (1997)
    Springer
    Biology and fertility of soils 25 (1997), S. 416-420 
    Details
    ISSN: 1432-0789
    Keywords: Key wordsPseudomonas fluorescens ; MelRC2Rif ; Motility ; Antibiosis ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Mutants defective in motility or antibiotics production were obtained by Tn5 mutagenesis of a biocontrol agent Pseudomonas fluorescens MelRC2Rif (wt). Tomato or melon seeds were co-inoculated with a Tn5 mutant and wt in a 1:1 ratio and then grown in soil for 10 days. There was no change in ratios of Tn5 mutants defective in antibiosis to wt in the process of rhizoplane colonization, suggesting little contribution of in vitro antibiosis to the rhizoplane competence of P. fluorescens MelRC2Rif. Similar results were also obtained when seeds treated with bacteria were planted in soil artificially infested with fungal pathogens. In contrast, ratios of Tn5 mutants defective in motility to wt significantly decreased, suggesting the contribution of motility to the rhizoplane competence of this bacterium. When a non-motile Tn5 mutant and wt were co-inoculated into soil at a matric potential of pF 2.3 (–20 kPa) and plants were then grown, there was no change in the ratio in rhizoplane colonization, suggesting that motility might have a role in the movement along roots but an insignificant role in the movement from bulk soil towards roots. When they were co-inoculated into 0.2% water agar (WA) instead of soil, a remarkable decline in ratios was detected. Thus it was soil structure that hindered the efficiency of motility. Time course enumeration of rhizoplane colonization of tomatoes grown in WA revealed that motility was an important means of movement towards and/or along roots rather than the multiplication on roots.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740050334
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  • 13
    Electronic Resource
    Electronic Resource
    Phosphatase activity in the rhizosphere and its relation to the depletion of soil organic phosphorus (1987)
    Springer
    Biology and fertility of soils 3 (1987), S. 199-204 
    Details
    ISSN: 1432-0789
    Keywords: Phosphatases ; Rhizosphere ; Organic phosphorus ; Allium cepa ; Brassica oleracea ; Triticum aestivum ; Trifolium alexandrinum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The distribution of phosphatase activity and of phosphate fractions of the soil in the proximity of roots was studied in order to evaluate the significance of phosphatases in P nutrition of various plants (Brassica oleracea, Allium cepa, Triticum aestivum, Trifolium alexandrinum). A considerable increase in both acid and alkaline phosphatase activity in all the four soil-root interfaces was observed. Maximum distances from the root surface at which activity increases were observed ranged from 2.0 mm to 3.1 mm for acid phosphatase and from 1.2 mm to 1.6 mm for alkaline phosphatase. The increase in phosphatase activity depended upon plant age, plant species and soil type. A significant correlation was noticed between the depletion of organic P and phosphatase activity in the rhizosphere soil of wheat (r = 0.99**) and clover (r = 0.97**). The maximum organic P depletion was 65% in clover and 86% in wheat, which was observed within a distance from the root of 0.8 mm in clover and 1.5 mm in wheat. Both the phosphatases in combination appear to be responsible for the depletion of organic P.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00640630
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  • 14
    Electronic Resource
    Electronic Resource
    Comparing microbial biomass, denitrification enzyme activity, and numbers of nitrifiers in the rhizospheres of Pinus sylvestris, Picea abies and Betula pendula seedlings by microscale methods (1999)
    Springer
    Biology and fertility of soils 30 (1999), S. 14-19 
    Details
    ISSN: 1432-0789
    Keywords: Key words Tree species ; Rhizosphere ; Microbial biomass ; Denitrification enzyme activity ; Autotrophic nitrifiers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Flushes of C and N from fumigation-extraction (FE-C and FE-N, respectively), substrate-induced respiration (SIR), denitrification enzyme activity (DEA) and numbers of NH4 + and NO2 – oxidizers were studied in the rhizospheres of Scots pine (Pinus sylvestris L.), Norway spruce [(Picea abies (L.) Karsten] and silver birch (Betula pendula Roth) seedlings growing in soil from a field afforestation site. The rhizosphere was defined as the soil adhering to the roots when they were carefully separated from the rest of the soil in the pots, termed as "planted bulk soil". Soil in unplanted pots was used as control soil. All seedlings had been grown from seed and had been infected by the natural mycorrhizas of soil. Overall, roots of all tree species tended to increase FE-C, FE-N, SIR and DEA compared to the unplanted soil, and the increase was higher in the rhizosphere than in the planted bulk soil. In the rhizospheres tree species did not differ in their effect on FE-C, FE-N and DEA, but SIR was lowest under spruce. In the planted bulk soils FE-C and SIR were lowest under spruce. The planted bulk soils differed probably because the roots of spruce did not extend as far in the pot as those of pine and birch. The numbers of both NH4 + and NO2 –oxidizers, determined by the most probable number method, were either unaffected or decreased by roots, with the exception of the spruce rhizosphere, where numbers of both were increased.
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    URL: http://dx.doi.org/10.1007/s003740050581
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  • 15
    Electronic Resource
    Electronic Resource
    The "oxygen paradox" of dinitrogen-fixing bacteria (2000)
    Springer
    Biology and fertility of soils 30 (2000), S. 363-373 
    Details
    ISSN: 1432-0789
    Keywords: Key words Azospirillum species ; Oxygen paradox ; Nitrogen fixation ; Rhizosphere ; Nitrogenase complex
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  N2 fixation by aerobic bacteria is a very energy demanding process, requiring efficient oxidative phosphorylation, while O2 is toxic for the nitrogenase complex. N2-fixing bacteria have evolved a variety of strategies to cope with this apparent "O2 paradox". This review compares strategies that azospirilla and other well-known N2-fixing soil bacteria use to overcome this O2 paradox. Attention will be given to the relationships between the natural habitat of these soil bacteria and their prevailing adaptations. In view of this knowledge the following questions will be addressed: are the specific adaptations observed in azospirilla sufficient to allow optimal proliferation and N2 fixation in their natural habitat? Could improving the O2 tolerance of the N2-fixing process contribute to the development of more efficient strains for the inoculation of plants?
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    URL: http://dx.doi.org/10.1007/s003740050017
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  • 16
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    Electronic Resource
    Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions (1999)
    Springer
    Biology and fertility of soils 29 (1999), S. 379-385 
    Details
    ISSN: 1432-0789
    Keywords: Key words Oxygen ; pH ; Rhizosphere ; Microsensor ; Rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  O2 and pH microsensors were used to analyse the microdistribution of O2 and pH inside and outside roots of lowland rice (Oryza sativa L.). The roots of 3-week-old transplants had O2 concentrations of about 20% air saturation at the surface, but due to a high rate of O2 consumption in the rhizosphere, the oxic region only extended about 0.4 mm into the surrounding soil. Also the fine lateral roots created an oxic zone extending about 0.15 mm into the soil. The O2 concentration within the roots approached air saturation close to the base, but only about 40–60% of air saturation in a region about 8 cm below the base where lateral rootlets were present. A shift from air to N2 around the leaves led to a drop of 50% in the O2 concentration after 12 min at a distance of 8.5 cm from the base. Flowering plants did not export O2 to the soil from the majority of their roots, but high microbial activity was present in a very thin biofilm covering the root surface. A brown colour around the thin lateral roots indicated some O2 export from these also during flowering. No oxidized zone was present around the roots at later stages of crop growth. The roots caused only minor minima in pH (〈0.2 pH units) in the rhizosphere as compared to the bulk soil. Illumination of the plants had no effect on rhizosphere pH.
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  • 17
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    Effect of bulk density and soil water tension on denitrification in the rhizosphere of spring wheat (Triticum vulgare (1987)
    Springer
    Biology and fertility of soils 5 (1987), S. 181-187 
    Details
    ISSN: 1432-0789
    Keywords: Denitrification ; Rhizosphere ; Bulk density ; Water tension ; Acetylene inhibition method ; Triticum vulgare
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Pot experiments were carried out to study the influence of bulk density (D b), soil water tension (pF) and presence of plants (spring wheat) on denitrification in a low-humus Bt-horizon of a udalf. Pots of only 5-cm depth were found to be most suitable for the experiments when using the acetylene inhibition method. Almost homogeneous soil compaction between 1.1 and 1.6g soil cm−3 was achieved by a Proctor tamper. Water tensions were adjusted by means of ceramic plates on which negative pressure was applied. No denitrification was detected in unplanted pots. With planted pots and increasing bulk density denitrification increased more in pots with 14-day-old plants than in pots with 7-day-old plants. With 14-day-old plants N2O emission pot−1 increased steadily from 2 μmol at D b 1.1 to 8 μmol at D b 1.6, when soil moisture was adjusted to pF 1.5, although root growth was impaired by higher bulk density. From an experiment with different bulk densities and water tensions it could be deduced that the air-filled porosity ultimately determined the rate of denitrification. When low water tension was applied for a longer period, water tension had an overriding effect on total denitrification. Denitrification intensity, however, i.e. the amount of N2O g−1 root fresh weight, was highest when low water tension was accompanied by high bulk density. The results suggest that the increase in denitrification intensity at oxygen stress is partly due to higher root exudation.
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    URL: http://dx.doi.org/10.1007/BF00256898
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  • 18
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    Nodulation competition among Bradyrhizobium japonicum strains as influenced by rhizosphere bacteria and iron availability (1989)
    Springer
    Biology and fertility of soils 7 (1989), S. 108-112 
    Details
    ISSN: 1432-0789
    Keywords: Bradyrhizobium japonicum ; Glycine max ; Soil inoculation ; Nodulation ; Rhizosphere ; Rhizobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Bacteria isolated from the root zones of field-grown soybean plants [Glycine max (L.) Merr.] were examined in a series of glasshouse experiments for an ability to affect nodulation competition among three strains of Bradyrhizobium japonicum (USDA 31, USDA 110, and USDA 123). Inocula applied at planting contained competing strains of B. japonicum with or without one of eleven isolates of rhizosphere bacteria. Tap-root nodules were harvested 28 days after planting, and nodule occupancies were determined for the bradyrhizobia strains originally applied. Under conditions of low iron availability, five isolates (four Pseudomonas spp. plus one Serratia sp.) caused significant changes in nodule occupancy relative to the corresponding control which was not inoculated with rhizosphere bacteria. During subsequent glasshouse experiments designed to verify and further characterize these effects, three fluorescent Pseudomonas spp. consistently altered nodulation competition among certain combinations of bradyrhizobia strains when the rooting medium did not contain added iron. This alteration typically reflected enhanced nodulation by USDA 110. Two of these isolates produced similar, although less pronounced, effects when ferric hydroxide was added to the rooting medium. The results suggest that certain rhizosphere bacteria, particularly fluorescent Pseudomonas spp., can affect nodulation competition among strains of R. japonicum. An additional implication is that iron availability may be an important factor modifying interactions involving the soybean plant, B. japonicum, and associated microorganisms in the host rhizosphere.
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    URL: http://dx.doi.org/10.1007/BF00292567
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  • 19
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    Stimulation of root exudation of rice seedlings by Azospirillum strains: carbon budget under gnotobiotic conditions (1987)
    Springer
    Biology and fertility of soils 4 (1987), S. 9-14 
    Details
    ISSN: 1432-0789
    Keywords: Rhizosphere ; Nitrogen fixation ; Root exudates ; Soil bacteria ; Carbon budget ; Rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The association of rice seedlings (cv. Delta) with different strains of Azospirillum was studied under monoxenic conditions in the dark. Axenic 3-day-old seedlings were obtained on a C- and N-free medium and inoculated with 6 · 107 bacteria per plant in a closed vial. Seven days later, different components of a carbon budget were evaluated on them and on sterile controls: respired CO2, carbon of shoot and roots, bacterial and soluble carbon in the medium. Two strains (A. lipoferum 4B and A. brasilense A95) isolated from the rhizosphere of rice caused an increase in exudation, + 36% and + 17% respectively compared with sterile control. Shoot carbon incorporation and respiration were reduced by inoculation. A third strain (A. brasilense R07) caused no significant change in exudation. A. lipoferum B7C isolated from maize did not stimulate rice exudation either. We further investigated a possible effect of nitrogen fixation on this phenomenon: inhibition of nitrogen fixation by 10% C2H2 did not modify the extent of C exudation by rice associated with A. lipoferum 4B or with the non-motile A. lipoferum 4T.
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    URL: http://dx.doi.org/10.1007/BF00280344
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  • 20
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    A comparison of microbial-feeding nematodes and protozoa in the rhizosphere of different plants (1990)
    Springer
    Biology and fertility of soils 9 (1990), S. 83-88 
    Details
    ISSN: 1432-0789
    Keywords: Nematodes ; Protozoa ; Rhizosphere ; Nutrient cycling
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The biomass of microbial-feeding nematodes and protozoa was measured in the rhizospheres of peas, barley, grass and turnips grown for 10 weeks in pots containing a clay-loam soil; in the rhizospheres of peas and barley grown for 3 weeks in a sandy soil; and in the rhizosphere of barley grown for 11 weeks in an unfertilised and a fertilised clay-loam soil. The nematode biomass was consistently larger in the rhizosphere of all plants in both soils than in the bulk soil, but the protozoa biomass showed a rhizosphere effect only under pea and fertilised barley. The biomass of nematodes in the rhizosphere (1.2–22.3 μg dry weight g-1 dry soil) was greater than the biomass of protozoa (0.1–3.2 μg g-1), and greater under pea〉barley〉grass〉turnip. It is suggested that nematodes are more able to exploit low bacterial densities than protozoa and that they initially migrate into the rhizosphere from the bulk soil. In samples of potato rhizosphere from field-grown plants, the nematode biomass was also greater than the active and total protozoan biomass. It is argued that in the rhizosphere the biomass of microbially feeding nematodes exceeds that of protozoa and that nematodes are more important in terms of nutrient cycling.
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    URL: http://dx.doi.org/10.1007/BF00335867
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  • 21
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    Short-term measurements of uptake of nitrogen fixed in the rhizospheres of sorghum (Sorghum bicolor) and millet (Pennisetum americanum) (1988)
    Springer
    Biology and fertility of soils 7 (1988), S. 11-15 
    Details
    ISSN: 1432-0789
    Keywords: 15N ; N2 fixation ; Rhizosphere ; Sorghum bicolor ; Pennisetum americanum ; Acetylene reduction assay (ARA)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary In a series of short-term experiments root systems of young sorghum and millet plants inoculated with N2-fixing bacteria were exposed to 15N2-enriched atmospheres for 72 h. The plants were grown in a normal atmosphere for up to 22 days after the end of the exposure to allow them to take up the fixed N2. Environmental conditions and genotypes of sorghum and millet were selected to maximise N2-fixation in the rhizosphere. Detectable amounts of fixed N (〉 16 μg/plant) were rapidly incorporated into sorghum plants grown in a sand/farmyard manure medium, but measurable fixation was found on only one occasion in plants grown in soil. N2 fixation was detectable in some experiments with soil-grown millet plants but the amounts were small (2–4 μg/plant) and represented less than 1 % of plant N accumulated over the same period. In many cases there was no detectable 15N2 incorporation despite measurable increases in ethylene concentration found during an acetylene reduction assay.
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    URL: http://dx.doi.org/10.1007/BF00260725
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  • 22
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    The microarthropod fauna associated with a deep rooted legume, Prosopis glandulosa, in the Chihuahuan Desert (1989)
    Springer
    Biology and fertility of soils 7 (1989), S. 330-335 
    Details
    ISSN: 1432-0789
    Keywords: Prosopis glandulosa ; Rhizosphere ; Mites ; Collembolans ; Chihuahuan Desert
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The rhizosphere microarthropod fauna of a woody, deep-rooted legume, Prosopis glandulosa, was sampled at four sites in the northern Chihuahuan Desert and compared with the rhizosphere microarthropod fauna of a co-dominant shrub, Larrea tridentata. Prostigmatid mites (Speleorchestes sp.,Neognathus sp., Rhagidia sp., Tydaeolus sp., Steneotarsonemus sp., Tarsonemus sp., Nanorchestes sp., Gordialycus sp.), the cryptostigmatid mites (Bankisonoma ovata and Passalozetes neomexicanus), the mesostigmatid (Protogamasellus mica), and the collembolan (Brachystomella arida) characterized the fauna at depths greater than 1 m. Microarthropods were recovered from soils at a depth of 13 m at the edge of a dry lake and at depths of 7 m in a dry wash which were pre-European man P. glandulosa habitats. In habitats where P. glandulosa is a recent invader, root depth and microarthropods were less than 3 m. In most habitats, population densites of microarthropods at depths 0.5 m were more than 100 times those at depths ≫ 0.5 m. Population densities of microarthropods associated with P. glandulosa growing at the edge of a dry wash were not significantly smaller at 0.5−1.0 m depth than at 0−0.5 m. The deep-rhizosphere microarthropod fauna is a reduced subset of the fauna of surficial soils, suggesting that this fauna plays a role in decomposition and mineralization processes functionally similar to that of microarthropods in surficial soils.
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    URL: http://dx.doi.org/10.1007/BF00257828
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  • 23
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    Distribution of microbial biomass across the rhizosphere of barley (Hordeum vulgare L.) in soils (1989)
    Springer
    Biology and fertility of soils 7 (1989), S. 341-345 
    Details
    ISSN: 1432-0789
    Keywords: ATP content ; Bulk soil ; CO2 production ; Mineral N ; Nitrification inhibitor ; Rhizosphere ; Sewage sludge ; Hordeum vulgare
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The microbial activity at the soil-root interface (rhizosphere) of barley was examined using a rhizobox system. In this system, the soil was placed in several compartments separated from each other by a 500-mesh nylon cloth. Plants were grown in the central compartment and after a 2-month growing period the roots were still confined to this compartment. The soil from each compartment was then analyzed for ATP, NO3 /−, total N, total C and CO2 production. The increase in ATP concentration was found in a range of 4 mm around the roots. The ATP content and CO2 production across the rhizosphere were correlated in all the soils used, but changes in NO3 − were not correlated with ATP changes. The range of NO3 − change was wider than that of the ATP change, indicating that NO3 − production is not influenced by the biological activity in the rhizosphere.
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    URL: http://dx.doi.org/10.1007/BF00257830
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  • 24
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    Gram-positive bacterial flora on the root surface of wheat (Triticum aestivum L.) grown under different soil conditions (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 121-125 
    Details
    ISSN: 1432-0789
    Keywords: Key words Wheat ; Rhizosphere ; Soil Microflora ; Gram-positive Bacteria ; Coryneform Bacteria ; Arthrobacter spp. ; Mol% G+C ; Diaminopimelic acid ; DAP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We identified 108 Gram-positive bacterial strains isolated from the root surface of wheat grown under different soil conditions. The strains were divided into four groups based on morphological and physiological characteristics, but most appeared to be coryneform. The taxonomic position of the various groups was verified by the guanine+cytosine DNA contents of the strains. In general, the ranges of these values agreed with those described for the respective taxonomic positions in the literature, with a few exceptions. With soil improvement the distribution of the various groups on the root surface changed, with the coryneform group becoming dominant. This group was further divided into five subgroups, according to cell wall components, cellulose-decomposition, and morphological characteristics, and were identified to genus level. The distribution of these subgroups on the root surface of wheat did not alter with soil improvement. The genus Arthrobacter, the dominant subgroup, predominated in every plot.
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    URL: http://dx.doi.org/10.1007/BF00336051
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    Azospirillum spp. participation in dry matter partitioning in grasses at the whole plant level (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 435-440 
    Details
    ISSN: 1432-0789
    Keywords: Key wordsAzospirillum spp. ; Crop plants ; Plant growth-promoting rhizobacteria ; Plant inoculation ; Rhizosphere ; Shoot-to-root ratio
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plant growth-promoting rhizobacteria, particularly those from the genus Azospirillum spp., may affect root functions such as growth and nutrient/water uptake, which in turn may affect shoot growth. Calculations based on data from literature on shoot and root mass of crop grasses (79 plant/bacteria associations were analyzed) revealed that inoculation with Azospirillum spp. increased the shoot-to-root (S/R) ratio in about half of reported cases and decreased the S/R ratio in the other half. In 11 of 35 cases, the S/R ratio increased when the shoot mass increased more than the root mass. In 23 of 35 cases, the root mass did not increase, yet the S/R ratio still increased. Thus, the increase in the S/R ratio indicated that shoot growth responds to inoculation more than root growth. A decrease in the S/R ratio occurred when (a) root growth dominated shoot growth even though both increased (16 of 36 cases), or (b) root growth either increased or remained unchanged, and shoot growth was either unaffected or even decreased (19 of 36 cases). This analysis suggests that: (a) Azospirillum spp. participates in the partitioning of dry matter (both carbon compounds and minerals) at the whole plant level by affecting root functions, and (b) the bacteria affect crop grass through multiple mechanisms operating during plant development.
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    URL: http://dx.doi.org/10.1007/BF00335919
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  • 26
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    Gram-positive bacterial flora on the root surface of wheat (Triticum aestivum L.) grown under different soil conditions (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 121-125 
    Details
    ISSN: 1432-0789
    Keywords: Wheat ; Rhizosphere ; Soil Microflora ; Gram-positive Bacteria ; Coryneform Bacteria ; Arthrobacter spp. ; Mol% G+C ; Diaminopimelic acid ; DAP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We identified 108 Gram-positive bacterial strains isolated from the root surface of wheat grown under different soil conditions. The strains were divided into four groups based on morphological and physiological characteristics, but most appeared to be coryneform. The taxonomic position of the various groups was verified by the guanine+cytosine DNA contents of the strains. In general, the ranges of these values agreed with those described for the respective taxonomic positions in the literature, with a few exceptions. With soil improvement the distribution of the various groups on the root surface changed, with the coryneform group becoming dominant. This group was further divided into five subgroups, according to cell wall components, cellulose-decomposition, and morphological characteristics, and were identified to genus level. The distribution of these subgroups on the root surface of wheat did not alter with soil improvement. The genus Arthrobacter, the dominant subgroup, predominated in every plot.
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  • 27
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    Soil protozoa and forest tree growth: non-nutritional effects and interaction with mycorrhizae (1995)
    Springer
    Biology and fertility of soils 20 (1995), S. 263-269 
    Details
    ISSN: 1432-0789
    Keywords: Ectomycorrhiza ; Lactarius ; Minearl nutrition ; Picea abies ; Plant growth ; Protozoa ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Mycorrhizal (Lactarius rufus Fr.) and non-mycorrhizal Norway spruce seedlings (Picea abies Karst.) were grown in a sand culture and inoculated with protozoa (naked amoebae and flagellates) extracted from native forest soil or with protozoa grown on agar cultures. A soil suspension from which the protozoa were eliminated by filtration or chloroform fumigation was used as a control. After 19 weeks of growth in a climate chamber at 20–22°C, the seedlings were harvested. Protozoa reduced the number of bacterial colony-forming units extracted from the rhizoplane of both non-mycorrhizal and mycorrhizal seedlings and significantly increased seedling growth. However, concentrations of mineral nutrients in needles were not increased in seedlings with protozoan treatment. It is concluded that the increased growth of seedling was not caused by nutrients released during amoebal grazing on rhizosphere micro-organisms. The protozoa presumably affected plant physiological processes, either directly, via production of phytohormones, or indirectly, via modification of the structure and performance of the rhizosphere microflora and their impact on plant growth. Mycorrhizal colonization significantly increased the abundance of naked amoebae at the rhizoplane. Our observations indicate that protozoa in the rhizosphere interact significantly with mycorrhizae.
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    URL: http://dx.doi.org/10.1007/BF00336088
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    Plant and soil responses to mycorrhizal fungi and rhizobacteria in nodulated or nitrate-fertilized peas (Pisum sativum L.) (1997)
    Springer
    Biology and fertility of soils 24 (1997), S. 164-168 
    Details
    ISSN: 1432-0789
    Keywords: Key wordsBacillus ; Glomus ; Mycorrhiza ; Pisum ; sativum ; Plant response ; Rhizosphere ; Root nodule ; Soil aggregation ; Soil pH ; Symbiosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Rhizosphere organisms affect plant development and soil stability. This study was conducted to determine the effects of a vesicular-arbuscular mycorrhizal (VAM) fungus [Glomus mosseae (Nicol. &〉; Gerd.) Gerd. and Trappe] and a rhizobacterium (Bacillus sp.) on nitrate-fertilized or nodulated pea (Pisum sativum L.) plants and on the status of water-stable soil aggregates. The plants were grown in pots in a yellow clay-loam soil, and inoculated with the VAM fungus and the rhizobacterium, with one of the two, or with neither. The Bacillus sp. and G. mosseae did not affect shoot dry mass in nodulated plants. Under N fertilization, the VAM fungus enhanced plant growth, while the rhizobacterium inhibited shoot growth, VAM root colonization, and nodule formation, but enhanced the root:shoot and the seed:shoot ratios. The inhibition of shoot growth and of root colonization appeared to be related. The water stability and pH of the VAM soils were higher than those of the non-VAM soils. The rhizobacterium enhanced the water-stable aggregate status in the non-VAM soils only. Under both N-nutrition regimes, the soils had the greatest proportion of the water-stable aggregates when inoculated with both rhizo-organisms and the lowest when colonized by neither. The two rhizo-organisms affected both plants and soil, and these effects were modified by the source of N input through N2 fixation or fertilization.
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    URL: http://dx.doi.org/10.1007/s003740050225
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    Enhanced dissolution of phosphate rocks in the rhizosphere (1997)
    Springer
    Biology and fertility of soils 24 (1997), S. 169-174 
    Details
    ISSN: 1432-0789
    Keywords: Key words Dissolution ; Open leaching ; Organic acids ; Phosphate rocks ; Plant uptake ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Dissolution of two phosphate rocks (PRS) which vary in their chemical reactivity was examined using two soils in the absence (closed-incubation and open-leaching) and presence (thin-layer) of plants. Greater dissolution was obtained in the presence than in the absence of plants. In the absence of plants, open-leaching resulted in higher dissolution than the closed-incubation system. Removal of the dissolved Ca from the zone of PR dissolution is considered to be the main reason for the increased dissolution in the open-leaching columns. In the case of the thin-layer experiment, removal of Ca and P through plant uptake and the supply of protons (H+) through the release of organic acids are considered to be the main reasons for the enhanced dissolution of PRs in the rhizosphere.
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    Kinetic properties and stability of potato acid phosphatase immobilized on Ca-polygalacturonate (1998)
    Springer
    Biology and fertility of soils 27 (1998), S. 97-103 
    Details
    ISSN: 1432-0789
    Keywords: Key words Potato acid phosphatase ; Ca-Polygalacturonate ; Rhizosphere ; Mucigel ; Michaelis-Menten kinetics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Acid phosphatase from potato was adsorbed and immobilized on a pre-formed network of Ca-polygalacturonate, a substrate which has a composition and morphology similar to the mucigel present at the root-soil interface. The influence of different types of organic buffers on enzyme adsorption and activity was investigated. The highest enzyme activity, for free and adsorbed enzyme, was obtained with Na-maleate buffer at pH 6.0, which was used for all subsequent experiments. The Michaelis-Menten kinetic parameters, Vmax and Km, were determined for free and adsorbed phosphatase. Vmax showed a 60% decrease upon adsorption (2.09±0.30 U/mg, for the soluble form and 0.84±0.15 U/mg, for the adsorbed enzyme), whereas Km increased from 0.49±0.15 mM for the free enzyme to 0.99±0.20 mM for adsorbed phosphatase. Phosphatase adsorption decreased as the concentration of NaCl increased, indicating that the enzyme is bound to the carrier gel through coulombic interactions. Adsorption increased stability of the enzyme as compared with the free enzyme (t 1/2 of the activity was 9.4 days and 5.8 days, respectively), but increased thermal and proteolytic inactivation. The pH/activity profile revealed no change in terms of shape or optimum pH (4.5) upon adsorption of the enzyme. These results indicate that adsorption of acid phosphatase on Ca-polygalacturonate induces changes in the kinetic properties and stability of the enzyme, and the same type of response can be extrapolated from these results for acid phosphatases of the rhizosphere.
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    URL: http://dx.doi.org/10.1007/s003740050406
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    The number of bacteria in the rhizosphere during plant development: relating colony-forming units to different reference units (1999)
    Springer
    Biology and fertility of soils 28 (1999), S. 285-291 
    Details
    ISSN: 1432-0789
    Keywords: Key words Chrysanthemum ; Rhizosphere ; Rhizobacteria ; Root age ; Reference unit
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  The number of bacteria was determined during the growth of chrysanthemum plants on young (tip) and old (base) root parts. We assessed if the same conclusions could be drawn on the dynamics of bacterial populations during plant development when different reference units were used to express the bacterial counts. The results indicated that the total number of bacteria on the base decreased significantly during plant development, when expressed per root length, per root fresh weight or per root surface. The number of bacteria on the tip only decreased significantly when expressed per root length. Using the unit of dry weight of adhering soil, contradictory results were obtained for both base and tip; in general, the number of bacteria increased significantly during plant development. Thus, different reference units may lead to different conclusions. Root surface seemed to be the best unit to use, but the use of this unit requires time-consuming measurements. Regression analyses indicated that the reference unit "root surface" was highly correlated with root fresh weight (R 2=93%). Thus, once this relation is determined, the less time-consuming unit can be measured in the experimental work. To analyse the data, the colony-forming units should be expressed per root surface. Besides bacterial numbers during plant development, we assessed whether the bacterial populations collected showed different growth rates on agar plates. The growth rates of bacteria from the tip and base and different development stages of the plants showed differences, indicating differences in the metabolic state of the collected populations.
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    Solubilization of inorganic phosphates and growth emergence of wheat as affected by Azotobacter chroococcum mutants (1999)
    Springer
    Biology and fertility of soils 28 (1999), S. 301-305 
    Details
    ISSN: 1432-0789
    Keywords: Key words Azotobacter chroococcum ; Inorganic phosphate solubilization ; Indole acetic acid ; Growth emergence ; Wheat ; Phytohormone production ; Rhizosphere ; Phosphate solubilizing bacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Phosphate-solubilizing strains of A. chroococcum isolated from the wheat rhizosphere were evaluated for their ability to solubilize tricalcium phosphate (TCP), Mussoorie rock phosphate (MRP) and also for indole-acetic-acid (IAA) production. Strains were selected on the basis of the clearance zone on solid agar media of Pikovskaya and Jensen's media containing TCP, and phosphate solubilization in Jensen's liquid culture medium containing both TCP and MRP. Mutants of the best phosphate-solubilizing (TCP 1.52 μg ml–1 MRP 0.19 μg ml–1), IAA-producing A. chroococum strain P-4, were developed and screened for P solubilization and phytohormone production. Five mutants solubilized more P (in the range of 1.5–1.7 μg/ml–1 of TCP and 0.19–0.22 μg ml–1 of MRP) than the parent strains. In vitro growth emergence studies of three wheat varieties, viz. C-306, WH-542 and HD-2009, showed better performance with phosphate-solubilizing mutants than with the parent strain.
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    Phosphate-solubilizing microorganisms associated with the rhizosphere of mangroves in a semiarid coastal lagoon (2000)
    Springer
    Biology and fertility of soils 30 (2000), S. 460-468 
    Details
    ISSN: 1432-0789
    Keywords: Key words Mangrove ; Bacillus spp. ; Enterobacter spp. ; Inorganic phosphate-solubilizing microorganisms ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  The phosphate-solubilizing potential of the rhizosphere microbial community in mangroves was demonstrated when culture media supplemented with insoluble, tribasic calcium phosphate, and incubated with roots of black (Avicennia germinans L.) and white [Laguncularia racemosa (L.) Gaertn.] mangrove became transparent after a few days of incubation. Thirteen phosphate-solubilizing bacterial strains were isolated from the rhizosphere of both species of mangroves: Bacillus amyloliquefaciens, Bacillus licheniformis, Bacillus atrophaeus, Paenibacillus macerans, Vibrio proteolyticus, Xanthobacter agilis, Enterobacter aerogenes, Enterobacter taylorae, Enterobacter asburiae, Kluyvera cryocrescens, Pseudomonas stutzeri, and Chryseomonas luteola. One bacterial isolate could not be identified. The rhizosphere of black mangroves also yielded the fungus Aspergillus niger. The phosphate-solubilizing activity of the isolates was first qualitatively evaluated by the formation of halos (clear zones) around the colonies growing on solid medium containing tribasic calcium phosphate as a sole phosphorus source. Spectrophotometric quantification of phosphate solubilization showed that all bacterial species and A. niger solubilized insoluble phosphate well in a liquid medium, and that V. proteolyticus was the most active solubilizing species among the bacteria. Gas chromatographic analyses of cell-free spent culture medium from the various bacteria demonstrated the presence of 11 identified, and several unidentified, volatile and nonvolatile organic acids. Those most commonly produced by different species were lactic, succinic, isovaleric, isobutyric, and acetic acids. Most of the bacterial species produced more than one organic acid whereas A. niger produced only succinic acid. We propose the production of organic acids by these mangrove rhizosphere microorganisms as a possible mechanism involved in the solubilization of insoluble calcium phosphate.
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    Azospirillum spp. participation in dry matter partitioning in grasses at the whole plant level (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 435-440 
    Details
    ISSN: 1432-0789
    Keywords: Azospirillum spp. ; Crop plants ; Plant growth-promoting rhizobacteria ; Plant inoculation ; Rhizosphere ; Shoot-to-root ratio
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plant growth-promoting rhizobacteria, particularly those from the genus Azospirillum spp., may affect root functions such as growth and nutrient/water uptake, which in turn may affect shoot growth. Calculations based on data from literature on shoot and root mass of crop grasses (79 plant/bacteria associations were analyzed) revealed that inoculation with Azospirillum spp. increased the shoot-to-root (S/R) ratio in about half of reported cases and decreased the S/R ratio in the other half. In 11 of 35 cases, the S/R ratio increased when the shoot mass increased more than the root mass. In 23 of 35 cases, the root mass did not increase, yet the S/R ratio still increased. Thus, the increase in the S/R ratio indicated that shoot growth responds to inoculation more than root growth. A decrease in the S/R ratio occurred when (a) root growth dominated shoot growth even though both increased (16 of 36 cases), or (b) root growth either increased or remained unchanged, and shoot growth was either unaffected or even decreased (19 of 36 cases). This analysis suggests that: (a) Azospirillum spp. participates in the partitioning of dry matter (both carbon compounds and minerals) at the whole plant level by affecting root functions, and (b) the bacteria affect crop grass through multiple mechanisms operating during plant development.
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    URL: http://dx.doi.org/10.1007/BF00335919
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    Methane-oxidizing activities and methanotrophic populations associated with wetland rice plants (1997)
    Springer
    Biology and fertility of soils 24 (1997), S. 261-265 
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    ISSN: 1432-0789
    Keywords: Key words Methane ; Wetland rice soils ; Oryza sativa ; Methane oxidation ; Acetylene Propylene oxide ; Methanotrophs ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Acetylene up to 500 μl l–1 did not affect methane formation in anoxic soil up to 12 h, but further incubation for 1 week showed strong inhibition of methanogenesis. To ascertain the extent of the oxidation of methane produced from rice-planted pots, the effect of acetylene on methane emission was studied. Two rice varieties (Toyohatamochi and Yamahikari) were grown in a greenhouse in submerged soil in pots. At about maximum tillering, heading, and grain-forming stages, methane fluxes were measured. Flux measurement was performed for 3 h from 6 pm, then acetylene at 100 μl l–1 was added to some of the pots. At 6 a.m. the following day, methane fluxes were again measured for 3 h. Only at maximum tillering stage of the variety Toyohatamochi was a significant increase (1.4 times) in methane flux caused by acetylene observed, whereas in the other treatments no significant increase in methane fluxes by acetylene could be defected. To ascertain the activity of methane monooxygenase (MMO), propylene oxide (PPO) formation from propylene was measured with excised roots and a basal portion of stems of the rice plants grown on the submerged soil. A level of 0.1–0.2 μmol PPO h–1 plant–1 was recorded. The roots showed the highest PPO formation per gram dry matter, followed by basal stems. Methane oxidation was roughly proportional to PPO formation. Soluble MMO-positive methanotroph populations were measured by plate counts. The number of colony-forming units per gram dry matter was 106–105 in roots, and 104–103 in basal stems. These results indicate the possibility of methane oxidation in association with wetland rice plants.
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    URL: http://dx.doi.org/10.1007/s003740050241
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    Using the spermosphere model technique to describe the dominant nitrogen-fixing microflora associated with wetland rice in two Egyptian soils (1989)
    Springer
    Biology and fertility of soils 7 (1989), S. 158-163 
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    ISSN: 1432-0789
    Keywords: Rhizosphere ; N2-fixation ; Wetland rice ; Dominant microflora ; Spermosphere model ; Enterobacter cloacae ; Enterobacter agglomerans ; Citrobacter freundii ; Klebsiella planticola ; Azospirillum lipoferum ; Azospirillum brasilense
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary This study is an attempt to describe the dominant N2-fixing microflora associated with the roots of wetland rice. Rice cultivar Giza 171 was grown in a phytotron on two alluvial Egyptian soils for 8 days, a stage when the nitrogenase activity of undisturbed plants reached a level of 245 × 10−6 mol C2H4 h−1 g−1 dry weight of leaf. The roots and rhizosphere soils were then used for counting and isolating dominant diazotrophs. Counts and initial enrichment steps were carried out on a selective medium made of an axenic rice plantlet, the “spermosphere model”, incubated under 1 % acetylene. The counts were very high, exceeding 108 bacteria g−1 dry weight of rhizosphere soil. Enterobacteriaceae were dominant; most isolates were Enterobacter cloacae belonging to different biotypes in the two soils. Enterobacter agglomerans, Citrobacter freundii and Klebsiella planticola were also present as members of the dominant microflora. Azospirillum brasilense and Azospirillum lipoferum were present as well, but less abundant.
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    Nitrification of ammonium in different components of a flooded rice soil system (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 321-326 
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    ISSN: 1432-0789
    Keywords: Key words Nitrification ; Flooded rice soils ; Rhizosphere ; Rice variety ; Crop growth stage ; Organic amendment
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Nitrification associated with the various components [subsurface soil from unplanted and planted (rhizosphere) fields, standing water and surface soil from planted and unplanted fields and leaf sheath suspensions] of submerged rice paddies was examined in incubation experiments with solutions inoculated with soil or water samples. Substantial nitrification occurred in all samples, standing water and surface soil samples in particular, during their 40-day incubation with NH4 +-N. Almost all the NH4 +-N, disappeared during incubation with standing water, was recovered as NO3 –-N. This, compared to 70–80% from all soil samples and only 29% from leaf sheath suspensions. Significant loss of nitrogen, especially from leaf sheath suspensions, is probably due to nitrification-denitrification as evidenced by its complete recovery in the presence of N-Serve. Nitrification potential of the soil and water samples varied with the crop growth stage and was more pronounced at tillering and panicle inititation stages than at other stages. Nitrification potential of samples from green-manure-amended plots was distinctly less than that of samples from control and urea-amended plots. Most probable number (MPN) estimates of ammonium-oxidizing bacteria were always higher in surface soil in both planted and unplanted plots at all stages of crop growth.
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    Gram-negative bacterial flora on the root surface of wheat (Triticum aestivum) grown under different soil conditions (1996)
    Springer
    Biology and fertility of soils 23 (1996), S. 273-281 
    Details
    ISSN: 1432-0789
    Keywords: Wheat ; Triticum aestivum ; Rhizosphere ; Soil microflora ; Gram-negative bacteria ; API 20 NE ; Flavobacterium spp ; Cytophaga
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We identified 161 Gram-negative bacterial strains isolated from the root surface of wheat grown under different soil conditions. The strains were divided into seven groups based on major morphological and physiological properties. Taxonomic allocation of the groups was verified by guanine+cytosine contents of DNA. Except for one group, which may be assumed to include bacteria belonging to the genera Flavobacterium and Cytophaga, the various groups were taxonomically united. The distribution of the groups changed with soil improvement. Pseudomonads predominated in unimproved soil, but Flavobacterium and Cytophaga spp. were predominant in the most improved soil. As all the strains were non-fermentative by Hugh and Leifson's test, API 20NE identification was applied. However, many strains were misidentified by this system, especially in the Flavobacterium and Cytophaga spp. group. For ecological studies, the strains were classified to species level by the API 20 NE system and by the results of a combination of guanine+cytosine (mol%) and isoprenoid quinone data. The pattern of distribution of the bacteria on the root surface of wheat varied at species level within one genus depending on soil conditions.
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    Antagonistic effect of Pseudomonas spp. on pathogenic fungi and enhancement of growth of green gram (Vigna radiata) (1999)
    Springer
    Biology and fertility of soils 29 (1999), S. 62-68 
    Details
    ISSN: 1432-0789
    Keywords: Key words Pseudomonas spp. ; Vigna radiata ; Rhizosphere ; Antifungal activity ; Dinitrogen fixation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Pseudomonas species were isolated from the rhizosphere of green gram [Vigna radiata (L.) Wilczek] and some of the rhizobacterial isolates were found to have a wide range of antifungal activity inhibiting growth of the phytopathogenic fungi Aspergillus sp., Curvularia sp., Fusarium oxysporum and Rhizoctonia solani in culture. These isolates also showed slight inhibition of the growth of a Bradyrhizobium strain (Vigna) in a spot test which was mainly a result of nutrient competition as culture supernatants of the Pseudomonas isolates did not inhibit the growth of bradyrhizobia but inhibited the growth of fungi. The rhizobacterial isolates produced siderophores in Fe-deficient succinate medium. However, the inhibition of fungal growth by different Pseudomonas isolates in Luria Bertani and King's medium B which were not limiting in Fe3+ ions suggested that, besides siderophores, other antifungal compounds (antibiotics) produced by these rhizobacteria were involved in antagonism. On coinoculation of green gram with Pseudomonas strains MRS13 and MRS16 and Bradyrhizobium sp. (Vigna) strain S24, there was a significant increase in nodule weight, plant dry weight and total plant N as compared to inoculation with Bradyrhizobium strain S24 alone, suggesting that the nodule-promoting effects of Pseudomonas sp. lead to an increase in symbiotic N fixation and plant growth.
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    Effect of low pO2 on colonization of maize roots by a genetically altered Pseudomonas putida [PH6(L1019)] (1997)
    Springer
    Biology and fertility of soils 26 (1997), S. 43-49 
    Details
    ISSN: 1432-0789
    Keywords: Key words Low pO2 ; Rhizosphere ; Pseudomonads ; Competition ; LacZY
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Among the factors which may affect colonization of roots by soil bacteria is that of rhizosphere oxygen partial pressure (pO2). The oxygen concentration in the root zone influences both microbes and roots. Roots exposed to low pO2, as might occur during flooding and waterlogging of the soil, become more leaky and loss of soluble carbon increases. To determine whether periods of low pO2 increased root colonization by a genetically altered pseudomonad we inoculated 3- to 4-week-old maize plants, grown in soil and transferred to a hydroponic system or grown in fritted clay, with Pseudomonas putida PH6(L1019)(lacZY+) following exposure of the roots to air or cylinder N2. Numbers of heterotrophs and the marked pseudomonad were determined by dilution plating. Low pO2 generally increased the numbers of bacteria associated with roots exposed to the treatments in solution or in undisturbed fritted clay rooting medium. Under low pO2 in a hydroponic system, roots of intact maize plants tended also to have higher soluble organic C and hexose (anthrone-detectable sugars) than roots exposed to air. The effect of low pO2 was most pronounced in the fritted clay where low pO2 favored colonization by the marked strain; numbers were 3- to 96-fold greater than those on roots flushed with air but accounted for only 0.06–0.61% of the total population. Roots exposed to low pO2 tended to accumulate more C. Results suggest that in the fritted clay, the pseudomonad was able to exploit the increased C supply and to achieve greater numbers on roots exposed to low pO2, whereas the dilution of carbon released from roots in the hydroponic apparatus did not allow for the same magnitude of increase on roots.
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    Effects of marigold (Tagetes sp.) roots on soil microorganisms (1998)
    Springer
    Biology and fertility of soils 27 (1998), S. 149-154 
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    ISSN: 1432-0789
    Keywords: Key words Marigold ; Tagetes ; Rhizosphere ; Nematode suppression ; Bacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Marigolds (genus Tagetes) suppress populations of soil endopathogenic nematodes such as Pratylenchus penetrans and Meloidogyne species. Nematode suppression by marigolds is thought to be due to thiophenes, heterocyclic sulfur-containing molecules abundant in this plant. When activated, thiophenes such as α-terthienyl produce oxygen radicals. If marigold roots release such a powerful biocidal agent and it is activated in soil, microbial populations in the marigold rhizosphere should be substantially perturbed. We made various measurements of microbial population size and activity in soils that had been cropped to marigolds (Crackerjack, Creole) in the field and in the greenhouse, and compared these with bare soil and soil cropped to rye (Secale cereale L.). Total extractable microbial biomass (measured by the fumigation extraction method), total bacteria (measured by epifluorescence microscopy on 5-(4,6-dichlorotriazine-2-γl) aminofluorescein-stained preparations), heterotrophic bacteria (measured by plate count on various media), and nitrite-oxidizing bacteria (measured by the most-probable-number method) were not significantly different in any of the treatments. Residues of 14C-labelled rye were mineralized slightly more rapidly in rye-cropped soil than in the other treatments, which were comparable. The rates of die-back of introduced cells of the bacteria Escherichia coli and Rhodococcus TE1 were similar in marigold-cropped and control soils, suggesting that there was not a noteworthy accumulation of biocidal agents in soils cropped to marigolds. We conclude that marigolds do not cause a general depression in the numbers of microorganisms in soils, and that nematode control by this plant may not be due to the release of a biocidal agent into the soil.
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    Survival and cell culturability of biocontrol Pseudomonas fluorescens CHA0 in the rhizosphere of cucumber grown in two soils of contrasting fertility status (2000)
    Springer
    Biology and fertility of soils 32 (2000), S. 217-221 
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    ISSN: 1432-0789
    Keywords: Key words  Pseudomonas fluorescens ; Cucumber ; Rhizosphere ; Biocontrol ; Culturability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  The effect of cucumber roots on survival patterns of the biocontrol soil inoculant Pseudomonas fluorescens CHA0-Rif was assessed for 22 days in two non-sterile soils, using a combination of total immunofluorescence cell counts, Kogure's direct viable counts and colony counts on plates containing rifampicin. In Eschikon soil (high fertility status for cucumber), CHA0-Rif persisted as culturable cells in bulk soil and in the rhizosphere, but colony counts were lower than viable counts and total cell counts inside root tissues. The occurrence of viable but non-culturable (VBNC) cells inside root tissues (5 log cells g–1 root) was unlikely to have resulted from the hydrogen peroxide treatment used to disinfect the root surface, as hydrogen peroxide caused the death of CHA0-Rif cells in vitro. In Siglistorf soil (low fertility status for cucumber), the inoculant was found mostly as non-culturable cells. Colony counts and viable counts of CHA0-Rif were similar, both in bulk soil and inside root tissues, whereas in the rhizosphere viable counts exceeded colony counts at the last two samplings (giving about 7 log VBNC cells g–1). In conclusion, soil type had a significant influence on the occurrence of VBNC cells of CHA0-Rif, although these cells were found in root-associated habitats (i.e. rhizosphere and root tissues) and not in bulk soil.
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    Misidentification of soil bacteria by fatty acid methyl ester (FAME) and BIOLOG analyses (2000)
    Springer
    Biology and fertility of soils 32 (2000), S. 256-258 
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    ISSN: 1432-0789
    Keywords: Key words Arthrobacter ; Micrococcus ; Rhizosphere ; Similarity index
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Fatty acid methyl ester (FAME) analysis is commonly used by soil scientists as a sole method for identifying soil bacteria. We observed discrepancies with this method for identifying certain species of bacteria. Therefore, we used carbon substrate oxidation patterns (BIOLOG) and some simple physical and chemical tests to determine the extent of these discrepancies. Identification with FAME profiles gave false positives for Arthrobacter globiformis, Micrococcus kristinae, and M. luteus, and identification with BIOLOG patterns gave a false positive identification for A. globiformis. A visual check and Gram stain are recommended when FAME analysis identifies soil isolates as M. kristinae or M. luteus, and an additional spore formation test is recommended when FAME and BIOLOG analyses identify isolates as A. globiformis.
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    Production of root-derived material and associated microbial growth in soil at different nutrient levels (1987)
    Springer
    Biology and fertility of soils 5 (1987), S. 126-132 
    Details
    ISSN: 1432-0789
    Keywords: Residual soil 14C ; Microbial biomass ; Root-derived organic matter ; Fluorescent pseudomonads ; Rhizosphere ; Nutrient levels
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Maize plants were grown for 42 days in a sandy soil at two different mineral nutrient levels, in an atmosphere containing 14CO2. The 14C and total carbon contents of shoots, roots, soil and soil microbial biomass were measured 28, 35 and 42 days after germination. Relative growth rates of shoots and roots decreased after 35 days at the lower nutrient level, but were relatively constant at the higher nutrient level. In the former treatment, 2% of the total 14C fixed was retained as a residue in soil at all harvests while at the higher nutrient level up to 4% was retained after 42 days. Incorporation of 14C into the soil microbial biomass was close to its maximum after 35 days at the lower nutrient level, but continued to increase at the higher level. Generally a good agreement existed between microbial biomass, 14C contents and numbers of fluorescent pseudomonads in the rhizosphere. Numbers of fluorescent pseudomonads in the rhizosphere were maximal after 35 days at the lower nutrient level and continued to increase at the higher nutrient level. The proportions of the residual 14C in soil, incorporated in the soil microbial biomass, were 28% to 41% at the lower nutrient level and 20%6 – 30% at the higher nutrient level. From the lower nutrient soil 18%6 – 52%6 of the residual soil 14C could be extracted with 0.5 N K2SO4, versus 14%6 – 16% from the higher nutrient soil. Microbial growth in the rhizosphere seemed directly affected by the depletion of mineral nutrients while plant growth and the related production of root-derived materials continued.
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    A sensitive method for measuring cyanide and cyanogenic glucosides in sand culture and soil (1987)
    Springer
    Biology and fertility of soils 5 (1987), S. 141-147 
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    ISSN: 1432-0789
    Keywords: Cyanogenic glucosides ; Cyanide ; Root exudates ; Rhizosphere ; Linum usitatissimum ; Pteridium aquilinum ; Linamarase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Sensitive methods for measuring cyanide and cyanogenic glucosides in soil and sand culture have been developed. A microdiffusion technique is described which depends on the enzymic conversion of linamarin and lotaustralin to HCN, its release following acidification and incubation, and its detection in NaOH. Conditions for hydrolysis and HCN recovery have been optimised. The cyanide content of a silt loam soil (under non-cyanogenic wheat) was 5.47 nmol cyanide g−1 air-dried soil whilst that in an organic soil under the cyanogenic bracken, Pteridium aqgilinum, was 12.2 nmol g−1. Exudation of cyanogenic glucosides by linseed, Linum usitatissimum, was measured in plant growth tubes containing sand and a nutrient medium. Sterile plants exuded an average of 6.88 nmol glucosides plant−1 week−1 whilst, in contaminated tubes, the level fell to 4.72 nmol. Analysis of plant roots on each sampling occasion showed that 6.88 nmol was, on average, equivalent to 16.15% of the total root content of cyanogenic glucosides. There was a low but positive correlation between fresh weight of plant roots and the level of exuded glucosides. There was no evidence that plant roots produced free HCN.
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    Root activity and carbon metabolism in soils (1988)
    Springer
    Biology and fertility of soils 7 (1988), S. 71-78 
    Details
    ISSN: 1432-0789
    Keywords: Root activity ; Rhizosphere ; C metabolism ; Microbial biomass ; Microbial activity ; Wheat ; Triticum aestivum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Two different soils were amended with 14C-labelled plant material and incubated under controlled laboratory conditions for 2 years. Half the samples were cropped with wheat (Triticum aestivum) 10 times in succession. At flowering, the wheat was harvested and the old roots removed from the soil, so that the soil was continuously occupied by predominantly active root systems. The remaining samples were maintained without plants under the same conditions. During the initial stages of high microbial activity, due to decomposition of the labile compounds, the size of the total microbial biomass was comparable for both treatments, and the metabolic quotient (qCO2-C = mg CO2-C·mg−1 Biomass C·h−1) was increased by the plants. During the subsequent low-activity decomposition stages, after the labile compounds had been progressively mineralized, the biomass was multiplied by a factor of 2–4 in the presence of plants compared to the bare soils. Nevertheless, qCO2-C tended to reach similar low values with both treatments. The 14C-labelled biomass was reduced by the presence of roots and qCO2-14C was increased. The significance of these results obtained from a model experiment is discussed in terms of (1) the variation in the substrate originating from the roots and controlled by the plant physiology, (2) nutrient availability for plants and microorganisms, (3) soil biotic capacities and (4) increased microbial turnover rates induced by the roots.
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    Inoculation of rice with nitrogen-fixing bacteria —problems and perspectives (1987)
    Springer
    Biology and fertility of soils 4 (1987), S. 21-26 
    Details
    ISSN: 1432-0789
    Keywords: Bacterial inoculation ; Rice yield ; Associative nitrogen fixation ; Azotobacter spp. ; Azospirillum spp. ; Pseudomonas spp. ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The present status and merits of inoculating rice with N2-fixing bacteria are discussed in the light of recent advances. Bacterial inoculation improves plant growth and rice yield but not uniformly. The yield response to inoculation is more pronounced in the presence of moderate levels of fertilizer N. Evidence for the establishment and activity of the inoculated bacteria is limited, and the poor survival of the inoculum under field conditions further complicates the effects of inoculation. There is no clear evidence that improved growth and mineral content following inoculation are due to increased N2 fixation. Beneficial effects of the inoculum on rice, such as plant growth promotion, N2 fixation and antagonism effects against pathogens need to be further investigated under laboratory and field conditions. Improved management practices, such as organic amendments, suitable water and soil management, selection of efficient microbial strains, selection of effective breeding lines with high associative nitrogen fixation, and better management of agrochemicals are some of the measures suggested for deriving benefits from bacterial associations with rice.
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    URL: http://dx.doi.org/10.1007/BF00280346
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    Organic and inorganic soil phosphates and acid phosphatase activity in the rhizosphere of 80-year-old Norway spruce [Picea abies (L.) Karst.] trees (1989)
    Springer
    Biology and fertility of soils 8 (1989), S. 128-133 
    Details
    ISSN: 1432-0789
    Keywords: Organic phosphates ; Rhizosphere ; Mycorrhizal roots ; Acid phosphatase ; Picea abies (L.) Karst. ; Norway spruce
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Inorganic and organic phosphates (P) were measured in bulk soil, rhizosphere soil and mycorrhizal rhizoplane soil of Norway spruce. Various methods of P extraction and estimation were compared. In addition, acid phosphatase activity and mycelial hyphae length were determined. In soil solutions from various locations, about 50% (range 35%–65%) of the total P was present as organic P. Compared to the bulk soil, the concentrations of readily hydrolysable organic P were lower in the rhizosphere soil and in the rhizoplane soil; this difference was particularly marked in the humus layer. In contrast, the concentrations of inorganic P either remained unaffected or increased. A 2- to 2.5-fold increase was found in the activity of acid phosphatase in the rhizoplane soil in comparison to the bulk soil. There was a positive correlation (r = 0.83***) between phosphatase activity and the length of mycelial hyphae. The results stress the role of organic P and of acid phosphatase in the rhizosphere in the P uptake by mycorrhizal roots of spruce trees grown on acid soils.
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    URL: http://dx.doi.org/10.1007/BF00257756
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    Cellulolytic and pectolytic activity of streptomycetes isolated from root-free soil, rhizosphere and mycorrhizosphere of pine (Pinus sylvestris L.) (1989)
    Springer
    Biology and fertility of soils 7 (1989), S. 365-369 
    Details
    ISSN: 1432-0789
    Keywords: Streptomycetes ; Cellulolytic ; Pectolytic activity ; Pine ; Pinus sylvestris ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Our studies have revealed that streptomycetes inhabiting root-free soil and the root zone of pine trees differ in their capacity to produce cellulolytic and pectolytic enzymes. Most of the root-zone organisms but only a few of the root-free soil isolates exhibited cellulolytic activity. A few of the root-zone organisms but no soil isolate showed pectolytic activity. In general the cellulolytic activity was higher in cellulase producers from the root zone than in those derived from the root-free soil. The streptomycetes studied produced only endopolymethylgalacturonase. The mean total activity of this enzyme was higher in the rhizosphere isolates but the mean specific activity was higher in the mycorrhizosphere organisms.
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    URL: http://dx.doi.org/10.1007/BF00257834
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    Effect of active roots on the decomposition of soil organic materials (1990)
    Springer
    Biology and fertility of soils 10 (1990), S. 121-126 
    Details
    ISSN: 1432-0789
    Keywords: Biodegradation ; Nutrient levels ; Mineralization ; Rhizosphere ; Microenvironment ; Root exudates ; Priming effect
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The effect of one form of soil organic matter, such as living roots or root exudates on another form of soil organic matter, such as dead roots or incorporated litter and litter leachates, has been studied from various perspectives over the last 25 years. The effect seems to be either positive (priming) or negative (conserving). The present review concentrates on the conserving effect, measured as a decrease in 14CO2 released, in both field and greenhouse/growth chamber studies. The field experiments suggested that certain physical conditions in the soil, such as less available moisture or restricted aeration which led to lower microbial activity, explained the conserving effect of living roots on soil organic matter. Although more detailed greenhouse/growth chamber studies confirmed the conserving effect per se, it appears that biological rather than physical factors could better explain the reduction in the rate of decomposition of 14C-labelled plant residues in the presence of roots. However, a complex picture has emerged through a variety of postulates, all proposed in attempts to explain the conserving effect. Finally, the most recent studies have argued that the decrease in decomposition of labelled organic matter in planted soil is probably more apparent than real. A decrease in respired 14CO2 could be explained by an incorporation of 14C derived from old roots into the rhizosphere microbial populations of the living roots. To make any further progress on the fundamental question of how soil organic matter moves along its continuum from a living to a refractory state, the microenvironment needs to be examined at periodic intervals. New developments in improved histochemical and electron-probe microanalyses look promising.
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    URL: http://dx.doi.org/10.1007/BF00336247
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    Effect of phosphonate on the rhizosphere microflora and the development of root rot (Phytophthora cinnamomi) in avocado (Persea americana) and pepper-corn (Schinus molle) tree seedlings (1991)
    Springer
    Biology and fertility of soils 11 (1991), S. 13-17 
    Details
    ISSN: 1432-0789
    Keywords: Phosphonate ; Soil microorganisms ; Rhizosphere ; Phytophthora cinnamomi ; Phytophthora palmivora ; Root rot ; Avocado ; Schinus molle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Application to soil of 1 g (recommended rate) or 10 g l-1 of phosphonate did not affect the numbers of bacteria and fungi nor the proportions of actinomycetes and fungi antagonistic to Phytophthora cinnamomi. Foliar phosphonate applications to avocado seedlings (Persea americana) did not affect microbial numbers or the proportions of microbes in the rhizosphere capable of antagonizing P. cinnamomi. Mycelium of P. cinnamomi and zoospores of P. palmivora did not appear to respond to diffusates from excised roots of phosphonate-treated avocado and pepper-corn tree (Schinus molle) seedlings, respectively. However, less extensive lesions were observed on the roots of fungicide-treated avocado and pepper-corn tree seedlings exposed to P. cinnamomi and P. palmivora, respectively. The reduction in P. cinnamomi infection on pepper-corn tree seedlings appears to be brought about by additive rather than interactive effects of the resident soil microflora and foliar-applied phosphonate.
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    URL: http://dx.doi.org/10.1007/BF00335827
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    Bacteria-grazing amoebae in situ in the rhizosphere (1991)
    Springer
    Biology and fertility of soils 11 (1991), S. 83-87 
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    ISSN: 1432-0789
    Keywords: Amoebae ; Protozoa ; Rhizosphere ; Nutrient cycling ; Biocontrol ; Microaggregates
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary An ultrastructural investigation of amoebae in situ in the rhizosphere showed that the protozoa are closely associated with soil aggregates and produce long pseudopodia that penetrate micropores. This could partly explain why bacteria are generally confined to the interiors of microaggregates. The presence of cytologically intact and partly digested bacteria in the food vacuoles indicates that rhizosphere bacteria are both ingested and digested by the amoebae. This digestion could lead to the recycling of P and N immobilized in rhizosphere microorganisms.
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    Occurrence of vesicular-arbuscular mycorrhizae with Amaranthaceae in soils of the Indian semi-arid region (1991)
    Springer
    Biology and fertility of soils 11 (1991), S. 140-144 
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    ISSN: 1432-0789
    Keywords: Endogonaceous ; Vesicular-arbuscular mycorrhiza ; Endomycorrhiza ; Symbiosis ; Amaranthaceae ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Some members of the family Amaranthaceae, which has mostly been reported as non-mycorrhizal, were examined for a symbiotic association with mycorrhizae in the semiarid and arid zones. Ten species belonging to five genera, Achyranthes, Aerva, Alternanthera, Amaranthus, and Celosia were examined, using 1.0-cm long root standards. Intercellular hyphae, vesicles and arbuscules were observed in the root cortex. The number of different types of spores in the rhizosphere soil of different plants ranged from one to three. The spores isolated represented nine species belonging to four genera, Glomus, Gigaspora, Sclerocystis, and Scutellospora. No correlation could be established between spore counts and either soil pH or soil moisture.
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    Diversity of diazotroph populations in the rhizosphere of maize (Zea mays L.) growing on different French soils (1991)
    Springer
    Biology and fertility of soils 11 (1991), S. 210-215 
    Details
    ISSN: 1432-0789
    Keywords: Rhizosphere ; Maize ; Bacillus circulans ; Enterobacteriaceae ; Nitrogen fixation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary We studied the dominant diazotrophs associated with maize roots and rhizosphere soil originating from three different locations in France. An aseptically grown maize plantlet, the “spermosphere model”, was used to isolate N2-fixing (acetylene-reducing) bacteria. Bacillus circulans was the dominant N2-fixing bacterium in the rhizosphere of maize-growing soils from Ramonville and Trogny, but was not found in maize-growing sandy soil from Pissos. In the latter soil, Enterobacter cloacae, Klebsiella terrigena, and Pseudomonas sp. were the most abundant diazotrophs. Azospirillum sp., which has been frequently reported as an important diazotroph accociated with the maize rhizosphere, was not isolated from any of these soils. The strains were compared for their acetylene-reducing activity in the spermosphere model. The Bacillus circulans strains, which were more frequently isolated, also exhibited significantly greater acetylene-reducing activity (3100 nmol ethylene day-1 plant-1) than the Enterobacteriaceae strains (180 nmol ethylene day-1 plant-1). This work indicates for the first time that Bacillus circulans is an important maizerhizosphere-associated bacterium and a potential plant growth-promoting rhizobacterium.
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    Nitrogen fixation by Azospirillium brasilense in soil and the rhizosphere under controlled environmental conditions (1991)
    Springer
    Biology and fertility of soils 12 (1991), S. 100-106 
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    ISSN: 1432-0789
    Keywords: Azospirillum ; 15N-isotope dilution ; Nitrogen fixation ; Acetylene reduction activity ; ARA ; Rhizosphere ; Mineral nitrogen ; Oxygen tension
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Acetylene reduction activity by Azospirillum brasilense, either free-living in soils or associated with wheat roots, was determined in a sterilised root environment at controlled levels of O2 tension and with different concentrations of mineral N. In an unplanted, inoculated soil nitrogenase activity remained low, at approximately 40 nmol C2H4 h-1 per 2kg fresh soil, increasing to 300 nmol C2H4 h-1 when malic acid was added as a C source via a dialyse tubing system. The N2 fixation by A. brasilense in the rhizosphere of an actively growing plant was much less sensitive to the repressing influence of free O2 than the free-living bacteria were. An optimum nitrogenase activity was observed at 10 kPa O2, with a relatively high level of activity remaining even at an O2 concentration of 20 kPa. Both NO inf3 sup- and NH inf4 sup+ repressed nitrogenase activity, which was less pronounced in the presence than in the absence of plants. The highest survival rates of inoculated A. brasilense and the highest rates of acetylene reduction were found in plants treated with azospirilli immediately after seedling emergence. Plants inoculated at a later stage of growth showed a lower bacterial density in the rhizosphere and, as a consequence, a lower N2-fixing potential. Subsequent inoculations with A. brasilense during plant development did not increase root colonisation and did not stimulate the associated acetylene reduction. By using the 15N dilution method, the affect of inoculation with A. brasilense in terms of plant N was calculated as 0.067 mg N2 fixed per plant, i.e., 3.3% of the N in the root and 1.6% in the plant shoot were of atmospheric origin. This 15N dilution was comparable to that seen in plants inoculated with non-N2-fixing Psudomonas fluorescens.
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    URL: http://dx.doi.org/10.1007/BF00341483
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    Use of aliette, a basipetally translocated antimicrobial compound, to enhance rhizophere colonization and nodulation by root-nodule bacteria (1991)
    Springer
    Biology and fertility of soils 12 (1991), S. 141-146 
    Details
    ISSN: 1432-0789
    Keywords: Aliette ; Colonization ; Fungicide ; Rhizobia ; Rhizosphere ; Bradyrhizobium japonicum ; Alfalfa ; Medicago sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary A method was developed to improve the colonizing ability of inoculated strains of root-nodule bacteria using aliette (aluminum tris-O-ethyl phosphonate), a basipetally translocated fungicide. Aliette applied to seeds of alfalfa inoculated with an aliette-resistant strain of Rhizobium meliloti increased the numbers of R. meliloti in the rhizosphere after 3 but not 37 days, increased the number of nodules, and with some seed treatments, increased the growth of alfalfa. The enhanced colonization by R. meliloti as a result of seed treatment with aliette lasted for at least 31 days for alfalfa, although plant weights did not increase, Colonization by R. meliloti was further enhanced if seeds and foliage were treated with the fungicide. Coating seeds or sparaying the foliage with aliette also increased the number and weight of nodules and nitrogenase activity in soybeans inoculated with an aliette-resistant strain of Bradyrhizobium japonicum. The stimulation of B. japonicum in the rhizosphere and of nodulation was evident with successive plantings of soybeans if the seeds for each planting were treated with the chemical, but aliette did not increase the yield of inoculated soybeans in the subsequent plantings. With only the seeds of the first planting of inoculated soybeans treated with aliette, the numbers of B. japonicum in the rhizosphere of subsequent plantings were only occasionally greater and the numbers of nodules on the later plantings were not increased. We suggest that root colonization, nodulation, and N2 fixation by Rhizobium and Bradyrhizobium may be enhanced by the use of basipetally translocated antimicrobial compounds together with root-nodule bacteria that are resistant to those compounds.
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    Microbial growth and nitrogen immobilization in the root zone of barley (Hordeum vulgare L.), Italian ryegrass (Lolium multiflorum Lam.), and white clover (Trifolium repens L.) (1991)
    Springer
    Biology and fertility of soils 12 (1991), S. 154-160 
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    ISSN: 1432-0789
    Keywords: Rhizosphere ; Bacterial counts ; Microbial biomass ; N immobilization ; Soil organic N
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The effect of roots on microbial growth and N immobilization was investigated in a pot experiment with barley, Italian ryegrass, and white clover. We used a silty subsoil with a low soil organic matter content (0.16%C and 0.012%N), which allowed us to measure N immobilization as an increase in total soil organic N (planted versus unplanted). At sampling, the soil was easily removed from intact roots by gentle washing, with a negligible loss of root material. Plant growth and extra mineral N (in planted soil only) gave increased total counts (fluorescence microscopy) and viable counts (plate dilution) of bacteria, a higher proportion of larger cells, and increased viable counts as a percentage of total counts. Under monocots, 12–17% of the added fertilizer N was recovered as soil organic N. Although this N immobilization was attributed to microbial assimilation, less than 1/4 was actually recovered as microbial biomass N, as measured with the chloroform fumigation/N-extraction method or calculated from total bacterial counts. The white clover accumulated substantial amounts of N due to N2 fixation. However, microbial N immobilization represented only 3% of the total N accumulation, showing that the microorganisms obtained a smaller share of biologically fixed N2 than of the N applied as fertilizer. Extra additions of mineral N (monocots) enhanced microbial N assimilation, partly due to increased plant growth. The results also strongly indicated, however, that the microbial growth under monocots was N-limited in the latter part of the experiment and that fertilizer N had a direct effect on microbial growth. In the early phase of plant growth, N immobilization ranged from 33 to 58 mg N g-1 root C. This level of immobilization required a release of organic C into the soil representing a minimum of 60–100% of that found in intact roots.
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    Effects of substrate sterilization, fungicide treatment, and mycorrhization helper bacteria on ectomycorrhizal formation of pedunculate oak (Quercus robur) inoculated with Laccaria laccata in two peat bare-root nurseries (1992)
    Springer
    Biology and fertility of soils 13 (1992), S. 55-57 
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    ISSN: 1432-0789
    Keywords: Bacteria ; Ectomycorrhiza ; Laccaria laccata ; Quercus robur ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Pedunculate oak seedlings (Quercus robur) inoculated with the ectomycorrhizal fungus Laccaria lacata were grown for 1 year on fertilized sphagnum peat in two nurseries. Three factors affecting microbial populations in the substrate were studied, fungicide treatment of the seeds, peat disinfection before sowing (methyl bromide or steam pasteurization), and inoculation with mycorrhization helper bacteria. Treatment of acorns with Iprodione had no depressive effect on mycorrhiza formation. Both disinfection techniques were equivalent, stimulating or depressing mycorrhiza formation depending on the initial microflora in the peat. The introduction of two previously selected mycorrhization helper bacteria (one Pseudomonas fluorescens and one unidentified fluorescent pseudomonad), isolated from L. laccata sporocarps associated with Douglas fir—L. laccata ectomycorrhizas in other nurseries, significantly increased the mycorrhizal rate from 30 to 53% of the short roots. The implications of these results for the controlled mycorrhization of planting stocks and the specificity of mycorrhization helper bacteria are discussed.
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    Survival of, and root colonization by, alginate-encapsulated Pseudomonas fluorescens cells following introduction into soil (1992)
    Springer
    Biology and fertility of soils 14 (1992), S. 14-22 
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    ISSN: 1432-0789
    Keywords: Pseudomonas fluorescens ; Alginate beads ; Soil ; Rhizosphere ; Rhizoplane ; Survival ; Root colonization ; Inoculation technique
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The survival of Pseudomonas fluorescens cells encapsulated in alginate beads and colonization of wheat roots was studied in soil microcosms inoculated with the cells in alginate beads of varying composition. Cells encapsulated in beads and introduced into a non-sterile loamy sand survived better than cells added directly to the same soil. A recovery/growth step for the bead-encapsulated cells was added before they were introduced into the soil, in an attempt to obtain optimal population levels in the soil. Further, bacterial populations that grew to the highest density in the beads subsequently showed the highest survival levels in soil. The addition of 3% skim milk, or 3% skim milk and 3% bentonite clay to all bead types consistently resulted in the highest survival of the encapsulated cells in soil. Root colonization by P. fluorescens was generally not impaired by the encapsulation in alginate. One week after inoculation into the soil, encapsulated cells in the various bead types were able to colonize the wheat rhizoplane at high population levels, similar to or exceeding those found when free cells were inoculated. In a second root colonization experiment the wheat rhizoplane was also efficiently colonized 7 weeks after the inoculant cells had been introduced into the soil in different bead types. In both assays, the cells encapsulated in beads amended with skim milk plus bentonite clay showed the highest root colonization rates. It is clear, therefore, that alginate-mediated establishment of inoculants can improve inoculant effectiveness.
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    Techniques for observing phosphorus mobilization in the rhizosphere (1992)
    Springer
    Biology and fertility of soils 14 (1992), S. 121-125 
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    ISSN: 1432-0789
    Keywords: Rhizosphere ; Calcium phosphate solubilization ; Nitrogen source ; Acidification ; Phosphatase activity ; Phenolphthalein phosphate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The techniques described here were developed to visualize the dissolution of sparingly soluble calcium phosphate and the presence of root-borne phosphatase in the rhizosphere. Newly formed calcium phosphate precipitate was suspended in agar containing other essential nutrients. The agar was poured into Petri dishes and acrylglass boxes and was used as a growth medium for seedlings of wheat, rape, buckwheat, and rice. With NH 4 + applied as the N source, the precipitate dissolved in the root vicinity and this was attributed to acidification. No dissolution occurred with NO 3 − as the N source. The release of a neutral phosphatase from roots was verified by embedding the roots of young seedlings in agar at pH 7 containing phenolphthalein phosphate. After pH was raised to the alkaline range by adding sodium hydroxide, the agar around the roots turned purple, especially around the roots of P-deprived plants. The most intensive phosphatase activity was found in apical root regions.
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    Influence of a plant growth-promoting pseudomonad and vesicular-arbuscular mycorrhizal fungus on alfalfa and birdsfoot trefoil growth and nodulation (1992)
    Springer
    Biology and fertility of soils 14 (1992), S. 175-180 
    Details
    ISSN: 1432-0789
    Keywords: Rhizobia ; Rhizosphere ; Acid soils ; Pastures ; Hill-lands ; Vesicular arbuscular mycorrhizal ; Pseudomonas putida ; Plant growth-promoting rhizobacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary In a growth chamber study we examined the influence of a plant growth-promoting rhizobacterium, Pseudomonas putida R-20, and an acid-tolerant vesicular-arbuscular mycorrhizal (VAM) fungus, Glomus intraradices 25, on Medicago sativa L. and Lotus corniculatus L. growth and nodule development. Seedlings were planted in an acidic (pH 5.5), P-deficient soil containing re-established native microflora (minus VAM) and appropriate rhizobia, and inoculated with the rhizobacterium, the VAM fungus, or both. The plants were assayed at three intervals for up to 10–11 weeks. The growth-promoting rhizobacteria alone increased alfalfa shoot mass by 23% compared to all other treatments, but only at 8 weeks of growth, apparently by promoting nodulation and N2 fixation (acetylene reduction activity). The presence of VAM, either alone or in combination with the rhizobacteria, generally decreased root length but only at 8 weeks also. As a group, the inoculation treatments increased all nodular measurements by 10 weeks of growth. Few treatment effects were found at 7 and 9 weeks for birdsfoot trefoil; neither plant nor nodular measurements differed among treatments. By 11 weeks, shoot mass was increased by the rhizobacteria alone by 36% compared to the control. As a group, the inoculation treatments all showed increased nodular responses by this time. The rhizobacteria stimulated mycorrhizal development on both plant species, but only at the initial samplings. No synergistic effects between the plant growth-promoting rhizobacterium and VAM inoculation were found. Although these results lend credence to the concept of managing microorganisms in the rhizosphere to improve plant growth, they emphasize the necessity for a more thorough understanding of microbial interactions as plants mature.
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    Fluctuations in bacterial populations on the root surface of wheat (Triticum aestivum L.) grown under different soil conditions (1992)
    Springer
    Biology and fertility of soils 14 (1992), S. 246-252 
    Details
    ISSN: 1432-0789
    Keywords: Volcanic ash soil ; Fluorescent pseudomonads ; Rhizosphere ; Wheat ; Bacterial groups ; Phosphate fertilizer
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Populations of several bacterial groups on the root surface of wheat and in root-free soil were investigated in volcanic ash soil and non-volcanic ash soil throughout a series of predetermined intervals. Over time, the populations changed similarly both on the root surface and in root-free soil. The numbers of total bacteria, fluorescent Pseudomonas spp., phosphate-solubilizing bacteria, and NH inf+ sup4 -oxidizing bacteria, were consistently lower in the plots with volcanic ash soil than with nonvolcanic ash soil, but the numbers of cellulose-decomposing bacteria were opposite to those of the other groups. Superphosphate application improved the growth of wheat in the volvanic ash soil. It did not, however, bring about any significant changes in the bacterial populations among the volcanic ash soils supplemented with three different levels of superphosphate, though there were some variations with plant age.
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    Effects of pine roots on microorganisms, fauna, and nitrogen availability in two soil horizons of a coniferous forest spodosol (1993)
    Springer
    Biology and fertility of soils 15 (1993), S. 113-119 
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    ISSN: 1432-0789
    Keywords: Microbial biomass ; Microarthropods ; Nematodes ; Rhizosphere ; Disturbance ; Microcosm
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary We investigated the effects of pitch pine seedling roots on extractable N, microbial growth rate, biomass C and N, and nematodes and microarthropods in microcosms with either organic (41% C, 1.14% N) or mineral (0.05% C, 0.01% N) horizon soils of a spondosol. Root quantity was manipulated by varying plant density (0, 1, 2, or 4 seedlings) and rhizosphere soil was separated from non-rhizosphere soil by a 1.2 μm mesh fabric. In the rhizosphere of organic soil horizons, moisture, microbial growth rate, biomass C and N, and extractable N declined as root density was increased, but there was little effect on nematodes or microarthropods. High levels of extractable N remained after 5 months, suggesting that N mineralization was stimulated during the incubation. In the rhizosphere of mineral soil horizons, microbial growth rate, and nematode and microarthropod abundances increased at higher root density, and in the absence of roots faunal abundance approached zero. Faunal activity was concentrated in the rhizosphere compared to non-rhizosphere soil. In organic soil horizons, roots may limit microbial activity by reducing soil moisture and/or N availability. However, in mineral soil horizons, where nutrient levels are very low, root inputs can stimulate microbial growth and faunal abundance by providing important substrates for microbial growth. Our results demonstrate a rhizosphere effect for soil fauna in the mineral soil, and thus extends the rhizosphere concept to components of the soil community other than microbes for forest ecosystems. Although our results need to be verified by field manipulations, we suggest that the effects of pine roots on nutrient cycling processes in coniferous forests can vary with soil nutrient content and, therefore, position in the soil profile.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00336428
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  • 64
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    Effects on yield and nutrition of mycorrhizal and nodulated Pueraria phaseoloides exerted by P-solubilizing rhizobacteria (1996)
    Springer
    Biology and fertility of soils 21 (1996), S. 23-29 
    Details
    ISSN: 1432-0789
    Keywords: Mycorrhiza ; Glomus sp. ; P-solubilizing bacteria ; Phytate-mineralizing rhizobacteria ; Pueraria phaseoloides ; Rhizosphere ; Unavailable P
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We studied the effect of bacteria involved in rock phosphate (four isolates), iron phosphate (two isolates), and aluminium phosphate (two isolates) solubilization, and two phytate-mineralizing bacteria in terms of their interaction with two Glomus spp. on Pueraria phaseoloides growth and nutrition. The plant —Rhizobium sp. — mucorrhiza symbiosis system may increase in yield and nutrition in association with specific rhizosphere bacteria that solubilize calcium, iron, and aluminium phosphates. No benefit from phytate-mineralizing bacteria was found under these experimental conditions. P. phaseloides growth responses were influenced in different ways by specific combinations of the selected bacteria and arbuscular mycorrhizal fungi. Considerable stimulation of nutrient uptake was observed with fungus-bacteria combinations of Azospirillum sp. 1, Bacillus sp. 1 or Enterobacter (spp. 1 or 2) associated with G. mosseae. The fact that Bacillus sp. 1, a calcium-phosphate solubilizing isolate, positively interacted with G. mosseae and negatively with G. fasciculatum is an indication of specific functional compatibility between the biotic components integrated in the system. From our results, the interactions between bacterial groups able to solubilize specific phosphate and mycorrhizal fungi cannot be interpreted as occurring only via P solubilization mechanisms since no generalized effect was obtained. Iron-phosphate solubilizing microorganisms were more active alone than in dual associations with Glomus sp., but the aluminium-phosphate dissolving isolates positively interacted in mycorrhizal plants. Further work is needed in this area in order to elucidate the mechanisms that affect rhizosphere microorganism interactions. G. mosseae was more effective but less infective than G. fasciculatum in most of the combined treatments.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00335989
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  • 65
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    Estimating microbial biomass N in soils with and without living roots: Limitations of a pre-extraction step (1996)
    Springer
    Biology and fertility of soils 21 (1996), S. 314-318 
    Details
    ISSN: 1432-0789
    Keywords: Key words Microbial biomass N ; Fumigation-extraction ; Pre-extraction ; Rhizosphere ; Roots ; Net-closed soil containers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Special net-closed soil containers were used in a pot experiment with low and high plant densities to give soil samples with and without roots. Soils from the containers were analysed either by the fumigation-extraction method or by a modified procedure starting with a pre-extraction and sieving step to remove plant roots from the samples. In the extracts NO-N, NH-N, organic N, and total N were measured. Microbial biomass N was calculated from the differences in total N in fumigated and unfumigated soils. Different plant densities had almost no influence on the values of the N compounds using either method. In soils with roots, significantly more organic N (and total N) was found by the fumigation-extraction method compared to soils without roots while no differences were obtained using pre-extractions and sieving. Though the organic N content in pre-extracts from soils with roots was significantly higher than from soils without roots, the NO-N and NH-N content was lower. Significant differences in biomass N in soils with and without roots were found only with the fumigation-extraction method. Biomass N levels calculated using the results after pre-extraction and sieving were about 50% lower than levels detected using fumigation-extraction alone. With the use of special net-closed soil containers, not only were soil samples produced with and without roots, but it was also possible to induce a rhizophere in the soils. A comparison of the two methods using these soils clearly demonstrated that the method used has profound influence on the final biomass N results. While higher ”biomass“ levels were found by fumigation-extraction in soils with roots, because root N becomes extractable after fumigation, the use of a pre-extraction and a sieving step may underestimate the total biomass N content due to the pre-extraction of microbial N (especially from rhizosphere microorganisms) from the sample. Nevertheless, pre-extraction and sieving followed by fumigation-extraction does seem to be the preferable method for biomass N measurement in comparative studies, because in most cases only minor errors will occur.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00334909
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  • 66
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    Endomycorrhizae in a newly cultivated acidic meadow: Effects of three years of barley cropping, tillage, lime, and phosphorus on root colonization and soil infectivity (1996)
    Springer
    Biology and fertility of soils 21 (1996), S. 160-165 
    Details
    ISSN: 1432-0789
    Keywords: Hordeum vulgare ; Agricultural ecosystem ; Acidic soil ; Soil infectivity ; Endomycorrhizae ; Reduced tillage ; Rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The dynamics of mycorrhizae under disturbance created by crop production is not well understood. A 3-year experiment was undertaken on a nutrient-poor and acidic land that had last been cultivated in the early 1970s. We observed the effects of cropping spring barley (Hordeum vulgare L.) under four P-fertilizer levels and four levels of lime, in a minimum (rototillage), a reduced (chisel), or a conventional tillage system, on the mycorrhizal receptiveness of the host (maximum level of mycorrhizal colonization, as measured at harvest) and soil infectivity most probable number method. The host receptiveness decreased with time, while crop yields and soil infectivity increased simultaneously with time. Liming increased mycorrhizal colonization of barley roots and soil infectivity. P additions decreased root colonization but did not significantly affect the most probable number valuse. Slightly higher soil infectivity estimates were found under reduced tillage.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00335928
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