ALBERT

Description: Ground deformations are among the main volcanic phenomena occurring within the caldera system and pres- ently recorded at different volcanoes worldwide including the Campi Flegrei active caldera (southern Italy). A new stratigraphic, sedimentological and paleontological survey carried out in the central sector of the Campi Flegrei caldera both along the already known La Starza succession and through a new excavated tunnel provided new insights into the ground movement episodes occurred in the last 15 kyr. This study, which has also benefited of unpublished boreholes stratigraphic data, shows that the most uplifted sector of the Campi Flegrei caldera, presently marked by the morphological structure of the La Starza cliff close to the Pozzuoli coastline, was charac- terized by a complex sedimentary evolution. It results from different phases of alternating marine transgressions and regressions, the latter marked by both continental volcanic and/or palustrine/lacustrine sediments. These al- ternations result from the interplay between (i) subsidence and uplift episodes of the caldera floor and (ii) sea level variations during the Holocene. A rest period of volcanism accompanied by a sea level rise determined a sig- nificant submersion phase in about 3000 years between 8.59 and 5.5 ka. This phase was defined by a sea level with a maximum water depth value of 60–80 m and a late stage recording significant episodes of ground move- ments. Subsequently, between 5.5 and 3.5 ka, a ground uplift of about 100 m occurred, with short subsidence around 4.5 ka following the Plinian Agnano-Monte Spina eruption. The net vertical displacement represents the recorded deformation linked with a volcanism period in which ~2.5 km3 of magma were erupted by different vents within the caldera. It is worth to note as the general trend of ground movement through the time indicates a similarity in the pattern, beyond its scale.

Description: Published

Description: 143-158

Description: 1V. Storia eruttiva

Description: JCR Journal

Description: Extreme and inaccessible environments are a new frontier that unmanned and remotely operated ve-hicles can today safely access and monitor. The Lusi mud eruption (NE Java Island, Indonesia) representsone of these harsh environments that are totally unreachable with traditional techniques. Here boilingmud is constantly spewed tens of meters in height and tall gas clouds surround the 100 m wide activecrater. The crater is surrounded by a ~600 m diameter circular zone of hot mud that prevents anyapproach to investigate and sample the eruption site. In order to access this active crater we designedand assembled a multipurpose drone.The Lusi drone is equipped with numerous airborne devices suitable for use on board of other mul-ticopters. During the missions, three cameras can complete 1) video survey, 2) high resolution photo-grammetry of desired and preselected polygons, and 3) thermal photogrammetry surveys with infra-redcamera to locate hotfluids seepage areas or faulted zones. Crater sampling and monitoring operationscan be pre-planned with aflight software, and the pilot is required only for take-off and landing. A winchallows the deployment of gas, mud and water samplers and contact thermometers to be operated withno risk for the aircraft. During the winch operations (that can be performed automatically), the aircrafthovers at a safety height until the tasks controlled by the winch-embedded processor are completed. Thedrone is also equipped with GPS-connected CO2and CH4sensors. Gridded surveys using these devicesallowed obtaining 2D maps of the concentration and distribution of various gasses over the area coveredby theflight path.The device is solid, stable even with significant wind, affordable, and easy to transport. The Lusi dronesuccessfully operated during several expeditions at the ongoing active Lusi eruption site and proved to bean excellent tool to study other harsh or unreachable sites, where operations with more conventionalmethods are too expensive, dangerous or simply impossible

Description: LUSI LAB project, PI A. Mazzini; esearch Council of Norway through itsCenters of Excellence funding scheme, Project Number 223272; BPLS (Badan Penanggulangan Lumpur Sidoarjo, Sidoarjo Mudflow Management Agency)

Description: Published

Description: 26-37

Description: 2IT. Laboratori sperimentali e analitici

Description: JCR Journal

Description: An Mw 6.1, devastating earthquake, on April 6, 2009, struck the Middle Aterno Valley (Abruzzi Apennines, Italy) due to the activation of a poorly known normal fault system. Structural analysis of the fault population and investigation of the relationships with the Quaternary continental deposits through integrated field and laboratory techniques were conducted in order to reconstruct the long-term, tectono-sedimentary evolution of the basin and hypothesize the size of the fault segment. A polyphasic evolution of the Middle Aterno Valley is characterized by a conjugate, ∼E-W and ∼NS-striking fault system, during the early stage of basin development, and by a dip-slip, NW-striking fault system in a later phase. The old conjugate fault system controlled the generation of the largest sedimentary traps in the area and is responsible for the horst and graben structures within the basin. During the Early Pleistocene the E-W and NS system reactivated with dip-slip kinematics. This gave rise to intra-basin bedrock highs and a significant syn-tectonic deposition, causing variable thickness and hiatuses of the continental infill. Subsequently, since the end of the Early Pleistocene, with the inception of the NW-striking fault system, several NW-strands linked into longer splays and their activity migrated toward a leading segment affecting the Paganica-San Demetrio basin: the Paganica-San Demetrio fault alignment. The findings from this work constrain and are consistent with the subsurface basin geometry inferred from previous geophysical investigations. Notably, two major elements of the ∼E-W and ∼NS-striking faults likely act as transfer to the nearby stepping active fault systems or form the boundaries, as geometric complexities, that limit the Paganica-San Demetrio fault segment overall length to 19 ± 3 km. The resulting size of the leading fault segment is coherent with the extent of the 6 April 2009 L'Aquila earthquake causative fault. The positive match between the geologic long-term and coseismic images of the 2009 seismogenic fault highlights that the comprehensive reconstruction of the deformation history offers a unique contribution to the understanding faults seismic potential.

Description: MIUR (Italian Ministry of Education, University and Research) project “FIRB Abruzzo - High-resolution analyses for assessing the seismic hazard and risk of the areas affected by the 6 April 2009 earthquake”, ref. RBAP10ZC8K_005 and RBAP10ZC8K_007, and by Agreement INGV-DPC 2012–2021

Description: Published

Description: 30-66

Description: 2T. Deformazione crostale attiva

Description: JCR Journal

Description: Soil CO2 flux and 222Rn activity measurements may positively contribute to the geochemicalmonitoring of active volcanoes. The influence of several environmental parameters on the gas signals has been substantially demonstrated. Therefore, the implementation of tools capable of removing (or minimising) the contribution of the atmospheric effects from the acquired time series is a challenge in volcano surveillance. Here, we present 4 years-long continuousmonitoring (fromApril 2007 to September 2011) of radon activity and soil CO2 flux collected on the NE flank of Stromboli volcano. Both gases record higher emissions during fall–winter (up to 2700 Bq * m−3 for radon and 750 g m−2 day−1 for CO2) than during spring–summer seasons. Short-time variations on 222Rn activity aremodulated by changes in soil humidity (rainfall), and changes in soil CO2 flux that may be ascribed to variations in wind speed and direction. The spectral analyses reveal diurnal and semi-diurnal cycles on both gases, outlining that atmospheric variations are capable to modify the gas release rate fromthe soil. The long-termsoil CO2 flux shows a slow decreasing trend, not visible in 222Rn activity, suggesting a possible difference in the source depth of the of the gases, CO2 being deeper and likely related to degassing at depth of the magma batch involved in the February–April 2007 effusive eruption. To minimise the effect of the environmental parameters on the 222Rn concentrations and soil CO2 fluxes, two different statistical treatments were applied: the Multiple Linear Regression (MLR) and the Principal Component Regression (PCR). These approaches allow to quantify theweight of each environmental factor on the two gas species and showa strong influence of some parameters on the gas transfer processes through soils. The residual values of radon and CO2 flux, i.e. the values obtained after correction for the environmental influence, were then compared with the eruptive episodes that occurred at Stromboli during the analysed time span (2007–2011) but no clear correlations emerge between soil gas release and volcanic activity. This is probably due to i) the distal location of the monitoring stations with respect to the active craters and to ii) the fact that during the investigated period no major eruptive phenomena (paroxysmal explosion, flank eruption) occurred. Comparison of MLR and PCR methods in time-series analysis indicates thatMLR can bemore easily applied to real time data processing in monitoring of open conduit active volcanoes (like Stromboli) where the transition to an eruptive phase may occur in relatively short times.

Description: This researchwas partly funded by ItalianMinistry of University and Research (MIUR) and by University of Torino-Fondazione Compagnia di San Paolo. Additional fundswere provided by the Italian “Presidenza del Consiglio dei Ministri–Dipartimento della Protezione Civile (DPC)” through the DEVnet Project (a cooperative program between the Departments of Earth Sciences of the University of Torino and the University of Florence) and through the “Potenziamento Monitoraggio Stromboli” project. Additional funds for improving our computing hardware were provided by Fondazione Cassa di Risparmio di Torino.

Description: Published

Description: 65-78

Description: 4V. Processi pre-eruttivi

Description: JCR Journal

Description: Among the most derived calanoid copepod superfamily Clausocalanoidea about half of the genera belong to the so-called “Bradfordian” families that are defined by the presence of sensory setae at the maxilla and maxilliped. Many of these “Bradfordian” taxa are insufficiently well described, because their taxonomy is complicated and phylogenetic relationships are not completely resolved. We therefore aimed to unravel their phylogenetic relationships using molecular multi-gene analyses. We conducted molecular multi-gene analysis on 26 species from 15 genera representing all seven “Bradfordian” families using five gene fragments, the nuclear ribosomal 18S, 28S and internal transcribed spacer 2 DNA, and mitochondrial cytochrome c oxidase subunit I and cytochrome b. The monophyly of “Bradfordians” as one lineage in the superfamily Clausocalanoidea was supported by Maximum Likelihood and Bayesian Inference multi-gene analyses. Except for the support of species belonging to the same genus and specimens belonging to the same species, no phylogenetic relationships among genera and families were supported. The impossibility of resolving phylogenetic relationships among “Bradfordian” genera and families may be due to the young age or fast radiation of “Bradfordians” within the mostly derived calanoid superfamily Clausocalanoidea. Therefore, mutation rates might be not sufficient to track phylogenetic relationships. Evidence on phylogenetic relationships between genera and families remain unresolved after implementing integrated morphological and molecular taxonomic approaches.

Description: Life cycle and reproduction of Calanus hyperboreus were studied during a year of record low ice cover in the southeastern Beaufort Sea. Stages CIV, adult females and CV dominated the overwintering population, suggesting a 2- to 3-year life cycle. Within two spring-summer months in the upper water column females filled their energy reserves before initiating their downward seasonal migration. From February to March, vigorous reproduction (20–65 eggs f−1 d−1) delivered numerous eggs (29 000 eggs m−2) at depth and nauplii N1-N3 (17 000 ind. m−2) in the water column. However, CI copepodite recruitment in May, coincident with the phytoplankton bloom, was modest in Amundsen Gulf compared to sites outside the gulf. Consequently, C. hyperboreus abundance and biomass stagnated throughout summer in Amundsen Gulf. As a mismatch between the first-feeding stages and food was unlikely under the favourable feeding conditions of April-May 2008, predation on the egg and larval stages in late winter presumably limited subsequent recruitment and population growth. Particularly abundant in Amundsen Gulf, the copepods Metridia longa and C. glacialis were likely important consumers of C. hyperboreus eggs and nauplii. With the ongoing climate-driven lengthening of the ice-free season, intensification of top-down control of C. hyperboreus recruitment by thriving populations of mesopelagic omnivores and carnivores like M. longa may counteract the potential benefits of increased primary production over the Arctic shelves margins for this key prey of pelagic fish, seabirds and the bowhead whale.

Description: Time series derived from paleoclimate archives are often irregularly sampled in time and thus not analysable using standard statistical methods such as correlation analyses. Although measures for the similarity between time series have been proposed for irregular time series, they do not account for the time scale dependency of the relationship. Stochastically distributed temporal sampling irregularities act qualitatively as a low-pass filter reducing the influence of fast variations from frequencies higher than about 0.5 (Δtmax) − 1, where Δtmax is the maximum time interval between observations. This may lead to overestimated correlations if the true correlation increases with time scale. Typically, correlations are underestimated due to a non-simultaneous sampling of time series. Here, we investigated different techniques to estimate time scale dependent correlations of weakly irregularly sampled time series, with a particular focus on different resampling methods and filters of varying complexity. The methods were tested on ensembles of synthetic time series that mimic the characteristics of Holocene marine sediment temperature proxy records. We found that a linear interpolation of the irregular time series onto a regular grid, followed by a simple Gaussian filter was the best approach to deal with the irregularity and account for the time scale dependence. This approach had both, minimal filter artefacts, particularly on short time scales, and a minimal loss of information due to filter length.

Description: Rapid declines in Arctic sea ice have captured attention and pose significant challenges to a variety of stakeholders. There is a rising demand for Arctic sea ice prediction at daily to seasonal time scales, which is partly a sea ice initial condition problem. Thus, a multivariate data assimilation that integrates sea ice observations to generate realistic and skillful model initialization is needed to improve predictive skill of Arctic sea ice. Sea ice data assimilation is a relatively new research area. In this review paper, we focus on two challenges for implementing multivariate data assimilation systems for sea ice forecast. First, to address the challenge of limited spatiotemporal coverage and large uncertainties of observations, we discuss sea ice parameters derived from satellite remote sensing that (1) have been utilized for improved model initialization, including concentration, thickness and drift, and (2) are currently under development with the potential for enhancing the predictability of Arctic sea ice, including melt ponds and sea ice leads. Second, to strive to generate the “best” estimate of sea ice initial conditions by combining model simulations/forecasts and observations, we review capabilities and limitations of different data assimilation techniques that have been developed and used to assimilate observed sea ice parameters in dynamical models.

Description: Hyperiid amphipods are predatory pelagic crustaceans that are particularly prevalent in high-latitude oceans. Many species are likely to have co-evolved with soft-bodied zooplankton groups such as salps and medusae, using them as substrate, for food, shelter or reproduction. Compared to other pelagic groups, such as fish, euphausiids and soft-bodied zooplankton, hyperiid amphipods are poorly studied especially in terms of their distribution and ecology. Hyperiids of the genus Themisto, comprising seven distinct species, are key players in temperate and cold-water pelagic ecosystems where they reach enormous levels of biomass. In these areas, they are important components of marine food webs, and they are major prey for many commercially important fish and squid stocks. In northern parts of the Southern Ocean, Themisto are so prevalent that they are considered to take on the role that Antarctic krill play further south. Nevertheless, although they are around the same size as krill, and may also occur in swarms, their feeding behaviour and mode of reproduction are completely different, hence their respective impacts on ecosystem structure differ. Themisto are major predators of meso- and macrozooplankton in several major oceanic regions covering shelves to open ocean from the polar regions to the subtropics. Based on a combination of published and unpublished occurrence data, we plot out the distributions of the seven species of Themisto. Further, we consider the different predators that rely on Themisto for a large fraction of their diet, demonstrating their major importance for higher trophic levels such as fish, seabirds and mammals. For instance, T. gaudichaudii in the Southern Ocean comprises a major part of the diets of around 80 different species of squid, fish, seabirds and marine mammals, while T. libellula in the Bering Sea and Greenland waters is a main prey item for commercially exploited fish species. We also consider the ongoing and predicted range expansions of Themisto species in light of environmental changes. In northern high latitudes, sub-Arctic Themisto species are replacing truly Arctic, ice-bound, species. In the Southern Ocean, a range expansion of T. gaudichaudii is expected as water masses warm, impacting higher trophic levels and biogeochemical cycles. We identify the many knowlegde gaps that must be filled in order to evaluate, monitor and predict the ecological shifts that will result from the changing patterns of distribution and abundance of this important pelagic group.

Description: Ostracods are small-sized crustaceans, which inhabit all aquatic ecosystems and, because they have a comprehensive fossil record, are important environmental and paleoenvironmental indicators. However several aspects of the ecology of modern species (the basis for the paleontological investigations) are still controversial. Previous authors have raised the hypothesis that benthic ostracods, because of their calcified carapaces, are unable to survive below the Carbonate Compensation Depth (CCD). Herein we test this hypothesis based on (1) ostracods newly collected from the Kuril-Kamchatka Trench at depths far below the CCD during the KuramBio II expedition; and (2) a compilation of all previously published records of (geologically) Recent deep-sea Ostracoda in regions deeper than 3500 m. The KuramBio II expedition provided hundreds of living, hadal ostracods from at least 30 species and 21 genera from thousands of meters deeper than the CCD in the Kuril-Kamchatka Trench region. Additionally, the KuramBio II expedition provided the deepest record (9307 m) of a living ostracod with calcified carapaces: specimens of the genus Krithe. Finally, the compilation of all published information on living ostracods show that a highly diverse assemblage both at high and low taxonomic levels (2 subclasses, 4 suborders, 25 families, 89 genera and at least 206 species) occur below 3500 m. Therefore, we conclude that contrary to previous beliefs, the new data from the Kuril-Kamchatka Trench and the compilation of the literature show that ostracods do live and are even sometimes abundant below the CCD.

Description: Enrichment of the oceans with CO2 may be beneficial for some marine phytoplankton, including harmful algae. Numerous laboratory experiments provided valuable insights into the effects of elevated pCO2 on the growth and physiology of harmful algal species, including the production of phycotoxins. Experiments close to natural conditions are the next step to improve predictions, as they consider the complex interplay between biotic and abiotic factors that can confound the direct effects of ocean acidification. We therefore investigated the effect of ocean acidification on the occurrence and abundance of phycotoxins in bulk plankton samples during a long-term mesocosm experiment in the Gullmar Fjord, Sweden, an area frequently experiencing harmful algal blooms. During the experimental period, a total of seven phycotoxin-producing harmful algal genera were identified in the fjord, and in accordance, six toxin classes were detected. However, within the mesocosms, only domoic acid and the corresponding producer Pseudo-nitzschia spp. was observed. Despite high variation within treatments, significantly higher particulate domoic acid contents were measured in the mesocosms with elevated pCO2. Higher particulate domoic acid contents were additionally associated with macronutrient limitation. The risks associated with potentially higher phycotoxin levels in the future ocean warrants attention and should be considered in prospective monitoring strategies for coastal marine waters.

Description: Essential Biodiversity Variables (EBV) are fundamental variables that can be used for assessing biodiversity change over time, for determining adherence to biodiversity policy, for monitoring progress towards sustainable development goals, and for tracking biodiversity responses to disturbances and management interventions. Data from observations or models that provide measured or estimated EBV values, which we refer to as EBV data products, can help to capture the above processes and trends and can serve as a coherent framework for documenting trends in biodiversity. Using primary biodiversity records and other raw data as sources to produce EBV data products depends on cooperation and interoperability among multiple stakeholders, including those collecting and mobilising data for EBVs and those producing, publishing and preserving EBV data products. Here, we encapsulate ten principles for the current best practice in EBV-focused biodiversity informatics as ‘The Bari Manifesto’, serving as implementation guidelines for data and research infrastructure providers to support the emerging EBV operational framework based on trans-national and cross-infrastructure scientific workflows. The principles provide guidance on how to contribute towards the production of EBV data products that are globally oriented, while remaining appropriate to the producer's own mission, vision and goals. These ten principles cover: data management planning; data structure; metadata; services; data quality; workflows; provenance; ontologies/vocabularies; data preservation; and accessibility. For each principle, desired outcomes and goals have been formulated. Some specific actions related to fulfilling the Bari Manifesto principles are highlighted in the context of each of four groups of organizations contributing to enabling data interoperability - data standards bodies, research data infrastructures, the pertinent research communities, and funders. The Bari Manifesto provides a roadmap enabling support for routine generation of EBV data products, and increases the likelihood of success for a global EBV framework.

Description: Multiple toxic and bioactive compounds produced by Alexandrium spp. cause adverse effects on bivalves, but these effects are frequently difficult to attribute to a single compound class. To disentangle the effect of neurotoxic vs lytic secondary metabolites, we exposed blue mussels to either a paralytic shellfish toxin (PST) producing Alexandrium spp. strain, or to an exclusively lytic compound (LC) producing strain, or a strain containing both compound classes, to evaluate the time dependent effects after 3 and 7 days of feeding. Tested parameters comprised signs of paralysis, feeding activity, and immune cell integrity (hemocyte numbers and viability; lysosomal membrane destabilization) and function (ROS production). Both compound classes caused paralysis and immune impairment. The only effect attributable exclusively to PST was increased phagocytic activity after 3 days and impaired feeding activity after 7 days, which curtailed toxin accumulation in digestive glands. Paralysis signals and lysosomal membrane destabilization were more closely, but not exclusively, matched with LC exposure. Effects on circulating hemocyte integrity and immune related functions were mostly transient or remain stable within 7 days; except for increased lysosomal labialization and decreased extracellular ROS production when mussels were exposed to the toxin combination. M. edulis displays adaptive fitness traits to survive and maintain immune capacity upon prolonged exposure to environmentally relevant concentrations of PST and/or LC producing Alexandrium strains.

Description: The first in situ measurements of seawater density that referred to a geographical position at sea and time of the year were carried out by Count Luigi Ferdinando Marsili between 1679 and 1680 in the Adriatic Sea, Aegean Sea, Marmara Sea, and the Bosporus. Not only was this the first investigation with documented oceanographic measurements carried out at stations, but themeasurements were described in such an accurateway that the authorswere able to reconstruct the observations in modern units. These first measurements concern the ‘‘specific gravity’’ of seawaters (i.e., the ratio between fluid densities). The data reported in the historical oceanographic treatise Osservazioni intorno al Bosforo Tracio (Marsili) allowed the reconstruction of the seawater density at different geographic locations between 1679 and 1680. Marsili’s experimental methodology included the collection of surface and deep water samples, the analysis of the samples with a hydrostatic ampoule, and the use of a reference water to standardize the measurements.Acomparison of reconstructed densities with present-day values shows an agreement within 10%–20% uncertainty, owing to various aspects of the measurement methodology that are difficult to reconstruct from the documentary evidence. Marsili also measured the current speed and the depth of the current inversion in the Bosporus, which are consistent with the present-day knowledge. The experimental data collected in the Bosporus enabledMarsili to enunciate a theory on the cause of the two-layer flow at the strait, demonstrated by his laboratory experiment and later confirmed by many analytical and numerical studies.

Description: American Meteorological Society.

Description: Published

Description: 845 - 860

Description: 4A. Oceanografia e clima

Description: JCR Journal

Description: The term “Dimension Stone” refers to natural stone that has been quarried, selected and processed into specific sizes or shapes, with or without one or more mechanically dressed or finished surfaces, for use as building facing, curbing, paving stone, monuments and memorials, and various industrial products. The dimension stone industry is currently increasing the volume of its activities: based on a prudent medium-term development forecast, the net product could reach one hundred million tons in 2020. For this reason, geoscientists and stakeholders need to reason about methods and technologies in the dimension stone sector and how to operate responsibly and sustainably in accordance with the following geoethical values. After a definition of geoethics and an overview of the dimension stone industry, the paper focuses on fundamental values of geoethics as stated in the Cape Town Statement on Geoethics. More precisely, geoethical values have been referred to real and practical cases of dimension stone subsectors, by presenting some examples recorded in Sardinia (Italy). This region has a long history of production of ornamental stones. Finally, tips and suggestions on how geoscientists (in particular geologists and mining engineers) can help the dimension stone sector in a geoethical way, i.e., responsibly and sustainably are herein offered.

Description: Published

Description: 101468

Description: 1TR. Georisorse

Description: 7SR AMBIENTE – Servizi e ricerca per la società

Description: 1TM. Formazione

Description: 3TM. Comunicazione

Description: JCR Journal

Description: We investigated the geochemical behaviour of major and Rare Earth Elements (REE), together with oxygen and deuterium isotopic composition in the aquifer of Vulcano, the southernmost island of the Aeolian archipelago (Italy). Studied wells, located at different distances from the crater, are characterised by different contributions of the rising volcanic fluids. In particular, those located in the proximity of La Fossa crater are affected by a strong interaction with volcanic-hydrothermal fluids and show REE behaviour similar to that of fresh rocks, suggesting a congruent dissolution of the solid matrix. Samples from the other wells, located in an area where the volcanic deposits are hydrothermally altered as an “advanced argillic facies”, are enriched in HREE and mirror the corresponding depletion observed in the altered rocks. Moreover, the different grade of interaction with hydrothermal fluids determines the main ligand that complexes the REE. The main ligand is CO3 2– in the wells that are more directly affected by hydrothermal circulation, whereas SO4 2− dominates in those located at greater distances from La Fossa crater. This information provides further clues to the complex groundwater circulation model of Vulcano Island, which is regulated by the variable mixing and interacting of rising volcano-hydrothermal fluids, meteoric infiltration and seawater, differently interacting with fresh and altered rocks.

Description: Published

Description: 121-129

Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici

Description: JCR Journal

Description: At present, the urban population has to cope with the effects caused from Urban Heat Island (UHI), poor air quality and increased frequency and/or intensity of extreme weather and climate events. The expected increase of these extremes in areas of the planet and the way to adapt to them has emphasized the need to investigate in detail the climate of the cities. Local vulnerability and risk assessments, supported by using regional climate models at very high resolution, are key to support development and implementation of effective local adaptation measures to make well-adapted and climate-resilient cities, i.e. more sustainable ones. This study aims to provide some quantitative information on the effectiveness of main local adaptation measures to reduce the magnitude of UHI, in terms of temperature and energy fluxes. The investigation was conducted by adopting the TEB 1D model for the Toulouse city case-study. Different urban configurations and adaptation measures have been considered in the model set up. The results confirm that different adaptation measures may reduce the temperature on the town elements during the daylight hours; among the different measures, the green roof prevent the radiative cooling, increasing the roof night temperature and contributing to the night UHI.

Description: Published

Description: 662-673

Description: 4A. Oceanografia e clima

Description: JCR Journal

Description: The Great Burma earthquake (MsGR 8.0; Ms 7.6–7.7) occurred on May 23rd, 1912, and was one of the most remarkable early 1900's seismic events in Asia as described by Gutenberg and Richter (1954). The earthquake, focused near Maymyo, struck the Northern Shan State in eastern Myanmar. Contemporary evaluation of damage distribution and oral accounts led to a correlation between the earthquake and the topographically prominent Kyaukkyan Fault near the western margin of the Shan Plateau, although direct evidence has never been reported. This study aims to find evidence of paleoseismic activity, and to better understand the relationship between the 1912 earthquake and the Kyaukkyan Fault. Paleoseismic trenching along the Kyaukkyan Fault revealed evidence of several surface rupturing events. The northernmost trench exposes at least two visible rupture events since 4660 ± 30 BP: an older rupture stratigraphically constrained by AMS 14C dating to between 4660 ± 30 BP and 1270 ± 30 BP, and a younger rupture formed after 1270 ± 30 BP. The presence of pottery, bricks and cookingrelated charcoal in the younger faulted stratigraphy demonstrates Kyaukkyan Fault activity within human times, and a possible correlation between the younger rupture and the 1912 Maymyo earthquake is not excluded. The southern paleoseismic trench, within a broad transtensional basin far from bounding faults, exposes two (undated) surface ruptures. Further study is required to correlate those ruptures to the events dated in the north. These preliminary paleoseismological results constitute the first quantitative evidence of paleoseismic activity along the northern ~160 km of the Kyaukkyan Fault, and support existing evidence that the Kyaukkyan Fault is an active but slow-slipping structure with a long interseismic period.

Description: Published

Description: 75-86

Description: 2T. Deformazione crostale attiva

Description: JCR Journal

Description: This study reports the complex textural and chemical features of K-feldspar megacrysts (up to 5 cm long) hosted in trachydacitic lava flows, lava domes, and coulées from Mt. Amiata volcano (Tuscan Magmatic Province, Central Italy). Backscattering and cathodoluminescence imaging, coupled with core to rim major and trace elements patterns, reveal a complex zoning, and resorption surfaces associated with sharp chemical variations (e.g., Sr and Ba). These zoning patterns originated by disequilibrium and re-equilibration events, related to the repetitive influx of mafic magmas or convective motions in the trachydacitic magma reservoir. Multiple mafic magma refilling events are also supported by the field occurrence of abundant microgranular magmatic enclaves in the studied products. Our results highlight that the abnormal dimension of the studied K-feldspars originates by the interplay between petrological and kinetic processes involving: (i) extensive dissolution; (ii) heterogeneous nucleation; (iii) alternation of spasmodic growth events in disequilibrium and near-equilibrium crystallization. Repetitive influx of hotter magmas and reheating can determine the thermal condition to the growth of few, large K-felspar megacrysts. Also, the strong textural and chemical similarities observed in the K-feldspar megacrysts from Mt. Amiata volcanic rocks and Mt. Capanne monzogranite (Elba Island, Central Italy) support the hypothesis of a phenocrystic origin of intrusive K-feldspar megacrysts.

Description: Tuscan regional authority (Regione Toscana) in the framework of the LAMMA-CNR Project “Monografia vulcanologica del Monte Amiata”

Description: Published

Description: 569-583

Description: 4V. Processi pre-eruttivi

Description: JCR Journal

Description: The thermal state of polar continental crust plays a crucial role for understanding the stability and thickness of large ice sheets, the visco-elastic response of the solid Earth due to unloading when large ice caps melt and, in turn, the accuracy of future sea-level rise prediction. Various studies demonstrate the need for precise measurements and estimation of geothermal heat flow (GHF) in Antarctica for better constrained boundary conditions to enhance the ice sheet model performance. This study provides ground-truth for regional indirect GHF estimates in the Amundsen Sea Embayment, which is part of the West Antarctic Rift System, by presenting in situ temperature measurements in continental shelf sediments. Our results show regionally elevated and heterogeneous GHF (mean of 65 mWm−2) in the Amundsen Sea Embayment. Considering thermal blanketing effects, induced by inflow of warmer water and sedimentary processes, the estimated GHF ranges between 65 mWm−2and 95 mWm−2.

Description: The interaction between ocean warming, hypoxia and hypercapnia, suggested by climate projections, may push an organism earlier to the limits of its thermal tolerance window. In a previous study on juveniles of green abalone (Haliotis fulgens), combined exposure to hypoxia and hypercapnia during heat stress induced a lowered critical thermal maximum (CTmax), indicated by constrained oxygen consumption, muscular spams and loss of attachment. Thus, the present study investigated the cell physiology in foot muscle of H. fulgens juveniles exposed to acute warming (18 °C to 32 °C at +3 °C day−1) under hypoxia (50% air saturation) and hypercapnia (~1000 μatm PCO2), alone and in combination, to decipher the mechanisms leading to functional loss in this tissue. Under exposure to either hypoxia or hypercapnia, citrate synthase (CS) activity decreased with initial warming, in line with thermal compensation, but returned to control levels at 32 °C. The anaerobic enzymes lactate and tauropine dehydrogenase increased only under hypoxia at 32 °C. Under the combined treatment, CS overcame thermal compensation and remained stable overall, indicating active mitochondrial regulation under these conditions. Limited accumulation of anaerobic metabolites indicates unchanged mode of energy production. In all treatments, upregulation of Hsp70 mRNA was observed already at 30 °C. However, lack of evidence for Hsp70 protein accumulation provides only limited support to thermal denaturation of proteins. We conclude that under combined hypoxia and hypercapnia, metabolic depression allowed the H. fulgens musculature to retain an aerobic mode of metabolism in response to warming but may have contributed to functional loss. Keywords: 1H NMR spectroscopy; Citrate synthase; CTmax; Hsp70; Lactate dehydrogenase; Tauropine; Tauropine dehydrogenase

Description: The region of the Filchner Outflow System (FOS) in the southeastern Weddell Sea is characterized by intensive and complex interactions of different water masses. Dense Ice Shelf Water (ISW) emerging from beneath the ice shelf cavities on the continental shelf, meets Modified Warm Deep Water (MWDW) originating from the Antarctic Circumpolar Current at the sill of the Filchner Trough. These hydrographic features convert the FOS into an oceanographic key region, which may also show enhanced biological productivity and corresponding aggregations of marine top predators. In this context, six adult Weddell seals (Leptonychotes weddellii) were instrumented with CTD-combined satellite relay data loggers in austral summer 2014. By means of these long-term data loggers we aimed at investigating the influence of environmental conditions on the seals’ foraging behaviour throughout seasons, focussing on the local oceanographic features. Weddell seals performed pelagic and demersal dives, mainly on the continental shelf, where they presumably exploited the abundant bentho-pelagic fish fauna. Diurnal and seasonal variations in light availability affected foraging activities. MWDW was associated with increased foraging effort. However, we observed differences in movements and habitat use between two different groups of Weddell seals. Seals tagged in the pack ice of the FOS focussed their foraging activities to the western and, partly, eastern flank of the Filchner Trough, which coincides with inflow pathways of MWDW. In contrast, Weddell seals tagged on the coastal fast ice exhibited typical central-place foraging and utilized resources close to their colony. High foraging effort in MWDW and high utilization of areas associated with an inflow of MWDW raise questions on the underlying biological features. This emphasizes the importance of further interdisciplinary ecological investigations in the near future, as the FOS may soon be impacted by predicted climatic changes.

Description: The chapter presents a review of sea ice properties in relation to sub-seasonal to seasonal (S2S) predictions in the Arctic and the Antarctic. After a concise presentation of the main processes governing sea ice physics, the spatial distribution, seasonal cycle, and variability of sea ice in both poles are described. Using a variety of observations and model reconstructions of the four recent decades, the memory of the main descriptors of the sea ice state is quantified. In both the Arctic and the Antarctic, persistence of the sea ice areal properties emerges as the primarily source of sea ice sub-seasonal predictability, with strong dependence on season. Further memory can be obtained from reemergence mechanisms, implying processes internal to sea ice and coupling with the atmosphere and the ocean. In addition, lessons from modeling studies are addressed in terms of potential sea ice predictability and actual predictive skill. Finally, the chapter provides an overview of our understanding of the possible role of sea ice as a source of S2S atmospheric predictability, both in the polar regions and beyond.

Description: The present study is based on a series of two-dimensional simple shear numerical simulations of two-phase non-linear viscous materials used to investigate the mechanical behaviour of two-phase aggregates representing partially molten rocks. These simulations couple viscoplastic deformation with dynamic recrystallisation (DRX). The aim of these simulations is to investigate the competition between deformation and recrystallisation, and how they affect the mechanical behaviour and resulting microstructures of the deforming material. We systematically vary the melt to solid rock ratio, the dihedral angle of melt and the ratio of DRX vs. deformation. The results show that the amount of DRX and the dihedral angle have a first-order impact on the bulk rheology and the melt distribution in the aggregate. The numerical results allow defining two regimes, depending on the relative contribution of deformation and DRX: (1) a deformation-dominated regime at high strain rates (i.e., with a low ratio of recrystallisation vs. viscoplastic deformation) and (2) a recrystallisation-dominated regime at low strain rates (i.e., with a high ratio of recrystallisation vs. viscoplastic deformation). The first case results in systems bearing large connected melt pockets whose viscous flow controls the deformation of the aggregate, while disconnected smaller melt pockets develop in models where dynamic recrystallisation dominates. The results of this study allow us to better understand the development of connected melt pockets, which may focus melt flow. The distribution of the melt phase plays a key role in the formation of larger-scale melt-enriched shear bands, which in turn has a direct influence on large-scale convective mantle flow.

Description: Numerical models are important tools for understanding the processes and feedbacks in the Earth system, including those involving changes in atmospheric CO2 (CO2,atm) concentrations. Here, we compile 55 published model studies (consisting of 778 individual simulations) that assess the impact of six forcing mechanisms on millennial-scale CO2,atm variations: changes in freshwater supply to the North Atlantic and Southern Ocean, the strength and position of the southern-hemisphere westerlies, Antarctic sea ice extent, and aeolian dust fluxes. We generally find agreement on the direction of simulated CO2,atm change across simulations, but the amplitude of change is inconsistent, primarily due to the different complexities of the model representation of Earth system processes. When freshwater is added to the North Atlantic, a reduced Atlantic Meridional Overturning Circulation (AMOC) is generally accompanied by an increase in Southern Ocean- and Pacific overturning, reduced Antarctic sea ice extent, spatially varying export production, and changes in carbon storage in the Atlantic (rising), in other ocean basins (generally decreasing) and on land (more varied). Positive or negative CO2,atm changes are simulated during AMOC minima due to a spatially and temporally varying dominance of individual terrestrial and oceanic drivers (and compensating effects between them) across the different models. In contrast, AMOC recoveries are often accompanied by rising CO2,atm levels, which are mostly driven by ocean carbon release (albeit from different regions). The magnitude of simulated CO2,atm rise broadly scales with the duration of the AMOC perturbation (i.e., the stadial length). When freshwater is added to the Southern Ocean, reduced deep-ocean ventilation drives a CO2,atm drop via reduced carbon release from the Southern Ocean. Although the impacts of shifted southern-hemisphere westerlies are inconsistent across model simulations, their intensification raises CO2,atm via enhanced Southern Ocean Ekman pumping. Increased supply of aeolian dust to the ocean, and thus iron fertilisation of marine productivity, consistently lowers modelled CO2,atm concentrations via more efficient nutrient utilisation. The magni- tude of CO2,atm change in response to dust flux variations, however, largely depends on the complexity of models' marine ecosystem and iron cycle. This especially applies to simulations forced by Antarctic sea ice changes, in which the direction of simulated CO2,atm change varies greatly across model hierarchies. Our compilation highlights that no single (forcing) mechanism can explain observed past millennial-scale CO2,atm variability, and identifies important future needs in coupled carbon cycle-climate modelling to better understand the mechanisms governing CO2,atm changes in the past.

Description: © The Authors, 2019. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 4.0 International License. The definitive version was published in Marine Pollution Bulletin, 140, (2019):364-373, doi:10.1016/j.marpolbul.2018.12.047.

Description: Estuaries provide significant cultural ecosystem services, including recreation and tourism. Disruptions of estuarine biogeochemical processes resulting from environmental degradation could interrupt the flow of these services, reducing benefits and diminishing the welfare of local communities. This study focused on recreational shellfishing in Buzzards Bay, Massachusetts (41.55°N, 70.80°W). Relationships among measures of recreational shellfishing, estuarine water quality, and local socioeconomic conditions were tested to understand how the benefits of cultural ecosystem services to local communities might be affected by declining water quality. Transferring estimated economic benefits from an analysis of nearby municipalities, the study finds that increases in Chl a during the 24-year period were associated with losses in recreational shellfishing benefits of $0.08–0.67 million per decade. The approach presented here suggests a more broadly applicable framework for assessing the impacts of changes in coastal ecosystem water quality on the welfare of local communities.

Description: We would like to thank the Buzzards Bay Coalition, the Buzzards Bay National Estuary Program, and the Massachusetts Department of Marine Fisheries for providing data for this analysis. We thank the 1074 citizen volunteers of the Buzzards Bay Coalition who collected the water quality samples and Mark Rasmussen for his leadership in sustaining the Baywatchers Program. Support for this analysis was provided by the John D. and Catherine T. MacArthur Foundation (Grant no. 14-106159-000-CFP), MIT Sea Grant (subaward number 5710004045), the Johnson Endowment of the WHOI Marine Policy Center, and SCD acknowledges support from the University of Virginia.

Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in he balance of salinity variance in a partially stratified estuary: Implications for exchange flow, mixing, and stratification. Journal of Physical Oceanography, 48(12), (2018) 2887-2899., doi: 10.1175/JPO-D-18-0032.1.

Description: Salinity variance dissipation is related to exchange flow through the salinity variance balance equation, and meanwhile its magnitude is also proportional to the turbulence production and stratification inside the estuary. As river flow increases, estuarine volume-integrated salinity variance dissipation increases owing to more variance input from the open boundaries driven by exchange flow and river flow. This corresponds to the increased efficient conversion of turbulence production to salinity variance dissipation due to the intensified stratification with higher river flow. Through the spring–neap cycle, the temporal variation of salinity variance dissipation is more dependent on stratification than turbulence production, so it reaches its maximum during the transition from neap to spring tides. During most of the transition time from spring to neap tides, the advective input of salinity variance from the open boundaries is larger than dissipation, resulting in the net increase of variance, which is mainly expressed as vertical variance, that is, stratification. The intensified stratification in turn increases salinity variance dissipation. During neap tides, a large amount of enhanced salinity variance dissipation is induced by the internal shear stress near the halocline. During most of the transition time from neap to spring tides, dissipation becomes larger than the advective input, so salinity variance decreases and the stratification is destroyed.

Description: TW was supported by the National Key R&D Program of China (Grant 2017YFA0604104), National Natural Science Foundation of China (Grant 41706002), Natural Science Foundation of Jiangsu Province (Grant BK20170864), and MEL Visiting Fellowship (MELRS1617). WRG was supported by NSF Grant OCE 1736539. Part of this work is finished during TW’s visit in MEL and WHOI. We would like to acknowledge John Warner for providing the codes of the Hudson estuary model, and Parker MacCready, the editor, and two reviewers for their insightful suggestions on improving the manuscript.

Description: 2019-06-06

Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Elsevier Ltd. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 244 (2019): 216-228, doi:10.1016/j.gca.2018.10.012.

Description: Mountain glaciers store dissolved organic carbon (DOC) that can be exported to river networks and subsequently respired to CO2. Despite this potential importance within the global carbon cycle, the seasonal variability and downstream transport of glacier-derived DOC in mountainous river basins remains largely unknown. To provide novel insight, here we present DOC concentrations and molecular-level dissolved organic matter (DOM) compositions from 22 nested, glaciated catchments (1.4 – 81.8 % glacier cover by area) in the Upper Ganges Basin, Western Himalaya over the course of the Indian summer monsoon (ISM) in 2014. Aliphatic and peptide-like compounds were abundant in glaciated headwaters but were overprinted by soil-derived phenolic, polyphenolic and condensed aromatic material as DOC concentrations increase moving downstream. Across the basin, DOC concentrations and soil-derived compound class contributions decreased sharply from pre- to post-ISM, implying increased relative contribution of glaciated headwater signals as the monsoon progresses. Incubation experiments further revealed a strong compositional control on the fraction of bioavailable DOC (BDOC), with glacier-derived DOC exhibiting the highest bioavailability. We hypothesize that short-term (i.e. in the coming decades) increases in glacier melt flux driven by climate change will further bias exported DOM toward an aliphatic-rich, bioavailable signal, especially during the ISM and post-ISM seasons. In contrast, eventual decreases in glacier melt flux due to mass loss will likely lead to more a soil-like DOM composition and lower bioavailability of exported DOC in the long term.

Description: We thank Britta Voss (WHOI) for assisting with sample collection; Travis Drake (FSU), and Ekaterina Bulygina (Woods Hole Research Center) for laboratory assistance; and the NHMFL ICR user program (NSF-DMR-1157490) for aiding in data acquisition and analysis. This study was partly supported by NSF-DEB-1145932 to R.G.M.S. J.D.H. was partially supported by the NSF Graduate Research Fellowship Program under grant number 2012126152, with additional support in the form of travel grants awarded by the MIT Houghten Fund and NHMFL. All data used in this study are available in the Supporting Information Tables S1 and S2.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fringer, O. B., Dawson, C. N., He, R., Ralston, D. K., & Zhang, Y. J. The future of coastal and estuarine modeling: findings from a workshop. Ocean Modelling, 143, (2019): 101458, doi:10.1016/j.ocemod.2019.101458.

Description: This paper summarizes the findings of a workshop convened in the United States in 2018 to discuss methods in coastal and estuarine modeling and to propose key areas of research and development needed to improve their accuracy and reliability. The focus of this paper is on physical processes, and we provide an overview of the current state-of-the-art based on presentations and discussions at the meeting, which revolved around the four primary themes of parameterizations, numerical methods, in-situ and remote-sensing measurements, and high-performance computing. A primary outcome of the workshop was agreement on the need to reduce subjectivity and improve reproducibility in modeling of physical processes in the coastal ocean. Reduction of subjectivity can be accomplished through development of standards for benchmarks, grid generation, and validation, and reproducibility can be improved through development of standards for input/output, coupling and model nesting, and reporting. Subjectivity can also be reduced through more engagement with the applied mathematics and computer science communities to develop methods for robust parameter estimation and uncertainty quantification. Such engagement could be encouraged through more collaboration between the forward and inverse modeling communities and integration of more applied math and computer science into oceanography curricula. Another outcome of the workshop was agreement on the need to develop high-resolution models that scale on advanced HPC systems to resolve, rather than parameterize, processes with horizontal scales that range between the depth and the internal Rossby deformation scale. Unsurprisingly, more research is needed on parameterizations of processes at scales smaller than the depth, including parameterizations for drag (including bottom roughness, bedforms, vegetation and corals), wave breaking, and air–sea interactions under strong wind conditions. Other topics that require significantly more work to better parameterize include nearshore wave modeling, sediment transport modeling, and morphodynamics. Finally, it was agreed that coastal models should be considered as key infrastructure needed to support research, just like laboratory facilities, field instrumentation, and research vessels. This will require a shift in the way proposals related to coastal ocean modeling are reviewed and funded.

Description: We thank Carmen Torres at Stanford University and Jennifer Warrillow at North Carolina State University for their assistance with workshop logistics. Helpful comments and suggestions were provided by two anonymous reviewers and Hans Burchard and John Warner. The workshop and preparation of this paper were funded by U.S. National Science Foundation Grant OCE-1749613.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 147(1), (2019): 389-406. doi: 10.1175/MWR-D-18-0158.1.

Description: The quasi-biennial oscillation (QBO) is stratified by stratospheric zonal wind direction and height into four phase pairs [easterly midstratospheric winds (QBOEM), easterly lower-stratospheric winds, westerly midstratospheric winds (QBOWM), and westerly lower-stratospheric winds] using an empirical orthogonal function analysis of daily stratospheric (100–10 hPa) zonal wind data during 1980–2017. Madden–Julian oscillation (MJO) events in which the MJO convective envelope moved eastward across the Maritime Continent (MC) during 1980–2017 are identified using the Real-time Multivariate MJO (RMM) index and the outgoing longwave radiation (OLR) MJO index (OMI). Comparison of RMM amplitudes by the QBO phase pair over the MC (RMM phases 4 and 5) reveals that boreal winter MJO events have the strongest amplitudes during QBOEM and the weakest amplitudes during QBOWM, which is consistent with QBO-driven differences in upper-tropospheric lower-stratospheric (UTLS) static stability. Additionally, boreal winter RMM events over the MC strengthen during QBOEM and weaken during QBOWM. In the OMI, those amplitude changes generally shift eastward to the eastern MC and western Pacific Ocean, which may result from differences in RMM and OMI index methodologies. During boreal summer, as the northeastward-propagating boreal summer intraseasonal oscillation (BSISO) becomes the dominant mode of intraseasonal variability, these relationships are reversed. Zonal differences in UTLS stability anomalies are consistent with amplitude changes of eastward-propagating MJO events across the MC during boreal winter, and meridional stability differences are consistent with amplitude changes of northeastward-propagating BSISO events during boreal summer. Results remain consistent when stratifying by neutral ENSO phase.

Description: The authors are grateful for the funding provided by the Office of Naval Research Propagation of Intra-Seasonal Tropical Oscillations (ONR PISTON) Award N0001416WX01752 and the USNA Trident Scholar program. The authors also appreciate the helpful comments of the two external reviewers.

Description: 2019-07-07

Description: The ozonesonde is a small balloon-borne instrument that is attached to a standard radiosonde to measure profiles of ozone from the surface to 35 km with ∼100-m vertical resolution. Ozonesonde data constitute a mainstay of satellite calibration and are used for climatologies and analysis of trends, especially in the lower stratosphere where satellites are most uncertain. The electrochemical concentration cell (ECC) ozonesonde has been deployed at ∼100 stations worldwide since the 1960s, with changes over time in manufacture and procedures, including details of the cell chemical solution and data processing. As a consequence, there are biases among different stations and discontinuities in profile time series from individual site records. For 22 years the Jülich (Germany) Ozonesonde Intercomparison Experiment (JOSIE) has periodically tested ozonesondes in a simulation chamber designated the World Calibration Centre for Ozonesondes (WCCOS) by WMO. During October–November 2017 a JOSIE campaign evaluated the sondes and procedures used in Southern Hemisphere Additional Ozonesondes (SHADOZ), a 14-station sonde network operating in the tropics and subtropics. A distinctive feature of the 2017 JOSIE was that the tests were conducted by operators from eight SHADOZ stations. Experimental protocols for the SHADOZ sonde configurations, which represent most of those in use today, are described, along with preliminary results. SHADOZ stations that follow WMO-recommended protocols record total ozone within 3% of the JOSIE reference instrument. These results and prior JOSIEs demonstrate that regular testing is essential to maintain best practices in ozonesonde operations and to ensure high-quality data for the satellite and ozone assessment communities.

Description: Localisation of ductile deformation in rocks is commonly found at all scales from crustal shear zones down to grain scale shear bands. Of the various mechanisms for localisation, mechanical anisotropy has received relatively little attention, especially in numerical modelling. Mechanical anisotropy can be due to dislocation creep of minerals (e.g. ice or mica) and/or layering in rocks (e.g. bedding, cleavage). We simulated simple-shear deformation of a locally anisotropic, single-phase power-law rheology material up to shear strain of five. Localisation of shear rate in narrow shear bands occurs, depending on the magnitude of anisotropy and the stress exponent. At high anisotropy values, strain-rate frequency distributions become approximately log-normal with heavy, exponential tails. Localisation due to anisotropy is scale-independent and thus provides a single mechanism for a self-organised hierarchy of shear bands and zones from mm-to km-scales. The numerical simulations are compared with the natural example of the Northern Shear Belt at Cap de Creus, NE Spain.

Description: © The Authors, 2019. This article is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 4.0 International License. The definitive version was published in Molecular Phylogenetics and Evolution (2019), doi:10.1016/j.ympev.2019.02.003.

Description: The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent common ancestor among con-specific samples collected in the same region has been viewed as evidence for subspecies. Several recent studies in cetaceans have employed this criterion to suggest subsequent intraspecific taxonomic revisions. We reason that employing intra-specific, spatially distinct monophyly at non-recombining, clonally inherited genomes is an unsatisfactory criterion for defining subspecies based upon theoretical (genetic drift) and practical (sampling effort) arguments. This point was illustrated by a re-analysis of a global mitogenomic assessment of fin whales, Balaenoptera physalus spp., published by Archer et al. (2013), which proposed to further subdivide the Northern Hemisphere fin whale subspecies, B. p. physalus. The proposed revision was based upon the detection of spatially distinct monophyly among North Atlantic and North Pacific fin whales in a genealogy based upon complete mitochondrial genome DNA sequences. The extended analysis conducted in this study (1,676 mitochondrial control region, 162 complete mitochondrial genome DNA sequences and 20 microsatellite loci genotyped in 358 samples) revealed that the apparent monophyly among North Atlantic fin whales reported by Archer et al. (2013) to be due to low sample sizes. In conclusion, defining sub-species from monophyly (i.e., the absence of para- or polyphyly) can lead to erroneous conclusions due to relatively “trivial” aspects, such as sampling. Basic population genetic processes (i.e., genetic drift and migration) also affect the time to the most recent common ancestor and hence the probability that individuals in a sample are monophyletic.

Description: We are grateful to Hanne Jørgensen, Anna Sellas, Mary Beth Rew and Christina Færch-Jensen for technical assistance. We thank Drs. P. E. Rosel and K. D. Mullin (U.S. National Marine Fisheries Service Southeast Fisheries Science Center) and members of the U.S. Northeast and Southeast Region Marine Mammal Stranding Network and its response teams, including the International Fund for Animal Welfare, the Marine Mammal Stranding Center, Mystic Aquarium, the Riverhead Foundation for Marine Research and Preservation (K. Durham) and the Marine Mammal Stranding Program of the University of North Carolina Wilmington for access to fin whale samples from the western North Atlantic. We thank Gisli Vikingsson for providing samples. We are indebted to Dr. Eduardo Secchi for facilitating data sharing. Data collection in the Southern Ocean was conducted under research projects Baleias (CNPq grants 557064/2009-0 and 408096/2013-6), INTERBIOTA (CNPq 407889/2013-2) and INCT-APA (CNPq 574018/2008-5), of the Brazilian Antarctic Program and a contribution by the research consortium ‘Ecology and Conservation of Marine Megafauna – EcoMega-CNPq’. MAS was supported through a FCT Investigator contract funded by POPH, QREN European Social Fund, and Portuguese Ministry for Science and Education. Data collection in the Azores was funded by TRACE-PTDC/MAR/74071/2006 and MAPCET-M2.1.2/F/012/2011 [FEDER, COMPETE, QREN European Social Fund, and Proconvergencia Açores/EU Program]. Fin whale illustration herein is used with the permission of Frédérique Lucas. We acknowledge the Center for Information Technology of the University of Groningen for IT support and access to the Peregrine high performance-computing cluster.

Description: The reconstruction of past environments by means of macrofossil and pollen analysis is commonly based on the modern ecological preferences of the taxa that may have produced these fossils. Here we present a modelling approach, in which we use modern vegetation–surface height relationships to quantify past surface heights in an Arctic ice-wedge polygon mire. Vegetation composition and ground surface height (GSH) were assessed in a polygon mire near Kytalyk (Northeastern Siberia). Cluster analysis revealed five plant communities, which are clearly separated with respect to ground surface height, frost surface height and coverages of open water and vegetation. Based on the composition of modern vegetation we constructed two sets of potential fossil types (plant macrofossils and pollen), an extensive one and a more restricted one to reflect different conditions of preservation and recognisability. We applied Canonical Correspondence Analysis to model the relationships between potential fossil types and measured GSH. Both models show a strong relationship between modelled and measured GSH values and a high accuracy in prediction. Finally, we used the models to predict GSH values for Holocene peat samples and found a fair correspondence with expert-based multi-proxy reconstruction of wetness conditions, even though only a minor part of the encountered fossils were represented in the GSH models, illustrating the robustness of the approach. Our approach can be used to reconstruct palaeoenvironmental conditions in a more objective way and can serve as a template for further palaeoecological studies.

Description: The Punta delle Pietre Nere (Gargano, Southern Italy) igneous body is constituted by gabbroic and syenitic rocks with lamprophyric affinity of different age (58 and 62 Ma, respectively). The chemical composition of the minerals clearly indicates that there is no genetic relationship between the two lithotypes, in agreement with their significant age difference. The chemical (trace elements) and Sr-Nd-Pb-isotopic composition of these rocks highlights an “anorogenic” geochemical affinity derived from mixed DMM-HIMU-EM mantle reservoirs, similarly to other Paleogene-Oligocenemagmatic provinces in the Circum-Mediterranean Area. In past literature, these features were interpreted as evidences for enriched asthenospheric mantle plume upwelling from deep regions beneath the Western Europe. Here we suggest that the HIMU-like composition of Punta delle Pietre Nere rocks is related to a lithosphericmantle source bearing amphibole-rich veins, resulting from crystallization of melts within the amphibole stability field in presence of H2O, as shown by several experimental works. Our results suggests partial melting at 70–90 km depth, which corresponds to the spinel-garnet transition (2.5–3.5 GPa) close to the amphibole stability limit (~90–110 km and 2.5–3.5 GPa).

Description: Published

Description: 316-328

Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici

Description: JCR Journal

Description: Differentiating thermokarst basin sediments with respect to the involved processes and environmental conditions is an important tool to understand permafrost landscape dynamics and scenarios and future trajectories in a warming Arctic and Subarctic. Thermokarst basin deposits have complex sedimentary structures due to the variability of Yedoma source sediments, reworking during the Late Glacial to Holocene climate changes, and different stages of thermokarst history. Here we reconstruct the dynamic growth of thermokarst lakes and basins and related changes of depositional conditions preserved in sediment sequences using a combination of biogeochemical data and robust grain-size endmember analysis (rEMMA). This multi-proxy approach is used on 10 sediment cores (each 300–400 cm deep) from two key thermokarst sites to distinguish four time slices that describe the Holocene thermokarst (lake) basin evolution in Central Yakutia (CY). Biogeochemical proxies and rEMMA reveal fine-grained sedimentation with rather high lake levels and/or reducing conditions, and coarse-grained sedimentation with rather shallow lake levels and/or oxidizing (i.e. terrestrial) conditions in relation to distal and proximal depositional and post-sedimentary conditions. Statistical analysis suggests that the biogeochemical parameters are almost independent of thermokarst deposit sedimentology. Thus, the biogeochemical parameters are considered as signals of secondary (post-sedimentary) reworking. The rEMMA results are clearly reflecting grain-size variations and depositional conditions. This indicates small-scale varying depositional environments, frequently changing lake levels, and predominantly lateral expansion at the edges of rapidly growing small thermokarst lakes and basins. These small bodies finally coalesced, forming the large thermokarst basins we see today in CY. Considering previous paleoenvironmental reconstructions in Siberia, we show the initiation of thaw and subsidence during the Late Glacial to Holocene transition between about 11 and 9 cal kyrs BP, intensive and extensive thermokarst activity for the Holocene Thermal Maximum (HTM) at about 7 to 5 cal kyrs BP, severely fluctuating water levels and further lateral basin growth between 3.5 cal kyrs BP and 1.5 cal kyrs BP, and the cessation of thermokarst activity and extensive frost-induced processes (i.e. permafrost aggradation) after about 1.5 cal kyrs BP. However, gradual permafrost warming over recent decades, in addition to human impacts, has led to renewed high rates of subsidence and abrupt, rapid CY thermokarst processes.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1889-1904, doi:10.1175/JPO-D-19-0053.1.

Description: A high-resolution numerical model, together with in situ and satellite observations, is used to explore the nature and dynamics of the dominant high-frequency (from one day to one week) variability in Denmark Strait. Mooring measurements in the center of the strait reveal that warm water “flooding events” occur, whereby the North Icelandic Irminger Current (NIIC) propagates offshore and advects subtropical-origin water northward through the deepest part of the sill. Two other types of mesoscale processes in Denmark Strait have been described previously in the literature, known as “boluses” and “pulses,” associated with a raising and lowering of the overflow water interface. Our measurements reveal that flooding events occur in conjunction with especially pronounced pulses. The model indicates that the NIIC hydrographic front is maintained by a balance between frontogenesis by the large-scale flow and frontolysis by baroclinic instability. Specifically, the temperature and salinity tendency equations demonstrate that the eddies act to relax the front, while the mean flow acts to sharpen it. Furthermore, the model reveals that the two dense water processes—boluses and pulses (and hence flooding events)—are dynamically related to each other and tied to the meandering of the hydrographic front in the strait. Our study thus provides a general framework for interpreting the short-time-scale variability of Denmark Strait Overflow Water entering the Irminger Sea.

Description: MAS was supported by the National Science Foundation (NSF) under Grants OCE-1558742 and OCE-1534618. RSP, PL, and DM were supported by NSF under Grants OCE-1558742 and OCE-1259618. WJvA was supported by the Helmholtz Infrastructure Initiative FRAM. TWNH and MA were supported by NSF under Grants OCE-1633124 and OCE-118123.

Description: 2020-07-01

Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Marine Science and Engineering 6(4), (2018): 144. doi:10.3390/jmse6040144.

Description: Geochronologies derived from sediment cores in coastal locations are often used to infer event bed characteristics such as deposit thicknesses and accumulation rates. Such studies commonly use naturally occurring, short-lived radioisotopes, such as Beryllium-7 (7Be) and Thorium-234 (234Th), to study depositional and post-depositional processes. These radioisotope activities, however, are not generally represented in sediment transport models that characterize coastal flood and storm deposition with grain size patterns and deposit thicknesses. We modified the Community Sediment Transport Modeling System (CSTMS) to account for reactive tracers and used this capability to represent the behavior of these short-lived radioisotopes on the sediment bed. This paper describes the model and presents results from a set of idealized, one-dimensional (vertical) test cases. The model configuration represented fluvial deposition followed by periods of episodic storm resuspension. Sensitivity tests explored the influence on seabed radioisotope profiles by the intensities of bioturbation and wave resuspension and the thickness of fluvial deposits. The intensity of biodiffusion affected the persistence of fluvial event beds as evidenced by 7Be. Both resuspension and biodiffusion increased the modeled seabed inventory of 234Th. A thick fluvial deposit increased the seabed inventory of 7Be and 234Th but mixing over time greatly reduced the difference in inventory of 234Th in fluvial deposits of different thicknesses.

Description: The Bureau of Ocean Energy Management (BOEM) provided funding for Birchler, Harris, and Kniskern. During his M.S. program Birchler received additional funds from VIMS’ Office of Academic Studies. This work was partially supported by the U.S. Geological Survey, Coastal and Marine Geology Program.

Description: Author Posting. © The Author(s), 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Rudolph, M. L., Sohn, R. A., & Lev, E.. Fluid oscillations in a laboratory geyser with a bubble trap. Journal of Volcanology and Geothermal Research, 368, (2018):100-110. doi:10.1016/j.jvolgeores.2018.11.003.

Description: Geysers are rare geologic features that episodically erupt water and steam. While it is understood that the eruptions are triggered by the conversion of thermal to kinetic energy during decompression of hot uids, geysers commonly exhibit a range of dynamic behaviors in-between and during eruptions that have yet to be adequately explained. In-situ measurements of temperature and pressure as well as remote geophysical techniques have revealed oscillatory behavior across a range of timescales, ranging from eruption cycles to impulsive bubble collapse events. Many geysers, including Old faithful in Yellowstone National Park, USA, are believed to have o set subsurface reservoirs (referred to as a `bubble trap') that can trap and accumulate noncondensable gas or steam entering the system. The impact of a bubble trap on the dynamic behaviors of the system, however, has not been fully established. We constructed a laboratory bubble trap and performed a series of experiments to study how uids oscillate back and forth between the eruption conduit and laterally-offseet reservoir in-between eruptions. We present a new theoretical model based on Hamiltonian mechanics that successfully predicts the oscillation frequencies observed in our experiments based on the conduit system geometry, the amount of gas that has accumulated in the bubble trap, and the amount of liquid water in the system. We demonstrate that when scaled to Old Faithful Geyser, this mechanism is capable of producing oscillations at the observed frequencies.

Description: The authors thank Paul Fucile and Glenn Macdonald for engineering support in designing and constructing the laboratory analog geyser rig. Funding for the laboratory geyser was provided by the US National Science Foundation grant EAR-1516361. EL was funded through a RISE award from Columbia University.

Description: 2019-11-10

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(2), (2019): 549-573. doi: 10.1175/JCLI-D-18-0413.1.

Description: Time series of surface meteorology and air–sea fluxes from the northern Bay of Bengal are analyzed, quantifying annual and seasonal means, variability, and the potential for surface fluxes to contribute significantly to variability in surface temperature and salinity. Strong signals were associated with solar insolation and its modulation by cloud cover, and, in the 5- to 50-day range, with intraseasonal oscillations (ISOs). The northeast (NE) monsoon (DJF) was typically cloud free, with strong latent heat loss and several moderate wind events, and had the only seasonal mean ocean heat loss. The spring intermonsoon (MAM) was cloud free and had light winds and the strongest ocean heating. Strong ISOs and Tropical Cyclone Komen were seen in the southwest (SW) monsoon (JJA), when 65% of the 2.2-m total rain fell, and oceanic mean heating was small. The fall intermonsoon (SON) initially had moderate convective systems and mean ocean heating, with a transition to drier winds and mean ocean heat loss in the last month. Observed surface freshwater flux applied to a layer of the observed thickness produced drops in salinity with timing and magnitude similar to the initial drops in salinity in the summer monsoon, but did not reproduce the salinity variability of the fall intermonsoon. Observed surface heat flux has the potential to cause the temperature trends of the different seasons, but uncertainty in how shortwave radiation is absorbed in the upper ocean limits quantifying the role of surface forcing in the evolution of mixed layer temperature.

Description: The deployment of the Woods Hole Oceanographic Institution (WHOI) mooring and RW and JTF were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453. DS acknowledges support from the Ministry of Earth Sciences under India’s National Monsoon Mission. HS acknowledges support from the Office of Naval Research Grants N00014-13-1-0453 and N00014-17-12398. The deployment of the WHOI mooring was done by RV Sagar Nidhi and the recovery by RV Sagar Kanya; the help of the crew and science parties is gratefully acknowledged as is the ongoing support at NIOT in Chennai and by other colleagues in India of this mooring work. The work of the staff of the WHOI Upper Ocean Process Group in the design, building, deployment, and recovery of the mooring and in processing the data is gratefully acknowledged. The software for the wavelet analysis was provided by Torrence and Compo (1998). Feedback on the paper by Dr. Amit Tandon and two anonymous reviewers is gratefully acknowledged. This paper is dedicated to Dr. Frank Bradley.

Description: 2019-06-28

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography, 49 (2), (2019): 607-630, doi:10.1175/JPO-D-18-0166.1.

Description: The Lagrangian motion in the eddy field produced from an unstable retrograde jet along the shelf break is studied from idealized numerical experiments with a primitive equation model. The jet is initially in thermal wind balance with a cross-isobath density gradient and is not subjected to any atmospheric forcing. Over the course of the model integration, the jet becomes unstable and produces a quasi-stationary eddy field over a 2-month period. During this period, the cross-slope flow at the shelf break is characterized by along-slope correlation scales of O(10) km and temporal correlation scales of a few days. The relative dispersion of parcels across isobaths is found to increase with time as tb, where 1 〈 b 〈 2. This mixed diffusive–ballistic regime appears to reflect the combined effects of (i) the short length scales of velocity correlation at the shelf break and (ii) the seaward excursion of monopolar and dipolar vortices. Cross-slope dispersion is greater offshore of the front than inshore of the front, as offshore parcels are both subducted onshore below density surfaces and translated offshore with eddies. Nonetheless, the exchange of parcels across the jet remains very limited on the monthly time scale. Particles originating from the bottom experience upward displacements of a few tens of meters and seaward displacements of O(100) km, suggesting that the eddy activity engendered by an unstable along-slope jet provides another mechanism for bottom boundary layer detachment near the shelf edge.

Description: The author expresses his gratitude to the researchers who contributed to the development and public dissemination of POM [for a list of contributors, see Mellor (2002) and comments in the source code]. Discussions with Kenneth Brink, Hyodae Seo, and Weifeng Zhang have been helpful. Comments provided by Kenneth Brink on a draft are gratefully acknowledged. The criticism from two anonymous reviewers allowed us to better focus the manuscript and to significantly improve its clarity. This work has been supported by Grant OCE-1556400 from the U.S. National Science Foundation.

Description: 2020-02-18

Description: Author Posting. © The Authors, 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Putland, R. L., Mackiewicz, A. G., & Mensinger, A. F. Localizing individual soniferous fish using passive acoustic monitoring. Ecological Informatics, 48, (2018):60-68. doi: 10.1016/j.ecoinf.2018.08.004.

Description: Identifying where fish inhabit is a fundamentally important topic in ecology and management allowing acoustically sensitive times and areas to be prioritized. Passive acoustic localization has the benefit of being a non-invasive and non-destructive observational tool, and provides unbiased data on the position and movement of aquatic animals. This study used the time difference of arrivals (TDOA) of sound recordings on a four-hydrophone array to pinpoint the location of male oyster toadfish, Opsanus tau, a cryptic fish that produces boatwhistles to attract females. Coupling the TDOA method with cross correlation of the different boatwhistles, individual toadfish were mapped during dawn (0523–0823), midday (1123–1423), dusk (1723–2023) and night (2323−0223) to examine the relationship between temporal and spatial trends. Seven individual males were identified within 0.5–24.2 m of the hydrophone array and 0.0–18.2 m of the other individuals. Uncertainty in passive acoustics localization was investigated using computer simulations as 〈2.0 m within a bearing of 033 to 148° of the linear hydrophone array. Passive acoustic monitoring is presented as a viable tool for monitoring the positions of soniferous species, like the oyster toadfish. The method used in this study could be applied to a variety of soniferous fishes, without disturbing them or their environment. Understanding the location of fishes can be linked to temporal and environmental parameters to investigate ecological trends, as well as to vessel activity to discuss how individuals' respond to anthropogenic noise.

Description: We would firstly like to thank the anonymous reviewers for providing helpful comments. We thank John Atkins, Mark Johnson and Ben Schlaer for their guidance in the acoustic localization method used and Emily Fleissner for helping to identify toadfish boatwhistles. We also thank Jenni Stanley for help with initial hydrophone set-up and the Marine Resources Center at MBL for dock space and resources. Funding was provided by National Science Foundation grants IOS 1354745, DOB 1359230 and 1659604 awarded to AFM.

Description: 2019-08-13

Description: Author Posting. © The Authors, 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Roca-Marti, M., Puigcorbe, V., Friedrich, J., van der Loeff, M. R., Rabe, B., Korhonen, M., Camara-Mor, P., Garcia-Orellana, J., & Masque, P. (2018). Distribution of pb-210 and po-210 in the arctic water column during the 2007 sea-ice minimum: Particle export in the ice-covered basins. Deep-Sea Research Part I-Oceanographic Research Papers, 142, 94-106, doi:10.1016/j.dsr.2018.09.011.

Description: 210Pb and 210Po are naturally occurring radionuclides that are commonly used as a proxy for particle and carbon export. In this study, the distribution of the 210Po/210Pb pair was investigated in the water column of the Barents, Kara and Laptev Seas and the Nansen, Amundsen and Makarov Basins in order to understand the particle dynamics in the Arctic Ocean during the 2007 sea-ice minimum (August-September). Minimum activities of total 210Pb and 210Po were found in the upper and lower haloclines (approx. 60-130 m), which are partly attributed to particle scavenging over the shelves, boundary current transport and subsequent advection of the water with low 210Pb and 210Po activities into the central Arctic. Widespread and substantial (〉50%) deficits of 210Po with respect to 210Pb were detected from surface waters to 200 m on the shelves, but also in the basins. This was particularly important in the Makarov Basin where, despite very low chlorophyll-a levels, estimates of annual new primary production were three times higher than in the Eurasian Basin. In the Nansen, Amundsen and Makarov 32 Basins, estimates of annual new primary production correlated with the deficits of 210Po in the upper 200 m of the water column, suggesting that in situ production and subsequent export of biogenic material were the mechanisms that controlled the removal of 210Po in the central Arctic. Unlike 210Po, 234Th deficits measured during the same expedition were found to be very small and not significant below 25 m in the basins (Cai et al., 2010), which indicates, given the shorter half-life of 234Th, that particle export fluxes in the central Arctic would have been higher before July-August in 2007 than later in the season.

Description: We would like to thank the crew of the R/V Polarstern and the scientists on board for their cooperation during the ARK-XXII/2 expedition. We greatly appreciate the hard work of Oliver Lechtenfeld who collected and processed the samples on board. Thanks to Dorothea Bauch for sharing her results on freshwater origin and Adam Ulfsbo for providing insightful comments on the estimates of primary production. This project was partly supported by the Ministerio de Ciencia e Innovación (CTM2011-28452, Spain). We wish to acknowledge the support of the Generalitat de Catalunya to the research group MERS (2017 SGR-1588). This work is contributing to the ICTA ‘Unit of Excellence’ (MinECo, MDM2015-0552). M.R.-M. was supported by a Spanish PhD fellowship (AP2010-2510) and an Australian postdoctoral fellowship (2017 Endeavour Research Fellowship).

Description: 2019-10-22

Description: The Aurelian Mammal Age for peninsular Italy was introduced on the basis of faunal assemblages mainly recovered at sites along the Via Aurelia west of Rome. These sites exposed a set of sedimentary deposits currently attributed to the Aurelia and to the Vitinia Formations correlated with MIS 9 and MIS 7, respectively. In the present paper we reconstruct the geologic-stratigraphic setting in the western sector of Rome within the wider context of glacio-eustatically controlled, geochronologically constrained aggradational successions defined for this region. We present a chronostratigraphic study based on dedicated field surveys, that, combined with five new 40Ar/39Ar ages and eighteen trace-element and EMP glass analyses of volcanic products, allow us to revise age and correlation with the Marine Isotopic Stages for 10 sites out of 12 previously attributed to the Aurelia Formation and the Torre in Pietra Faunal Unit. In particular, we demonstrate a MIS 13/MIS 11 age for several sections along the Via Aurelia between Malagrotta and Castel di Guido. Based on this new geochronological framework, the first occurrences of Canis lupus and Vulpes vulpes in Italy are antedated to MIS 11, within the Fontana Ranuccio Faunal Unit of the Galerian Mammal Age, consistent with the wider European context. This contribution is intended as the groundwork for a revision of the Middle Pleistocene Mammal Ages of the Italian peninsula, according to the improved chronostratigraphy of the geologic sections hosting the faunal assemblages.

Description: Published

Description: 173-199

Description: 5A. Paleoclima e ricerche polari

Description: JCR Journal

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1577-1592, doi:10.1175/JPO-D-18-0124.1.

Description: The main source feeding the abyssal circulation of the North Pacific is the deep, northward flow of 5–6 Sverdrups (Sv; 1 Sv ≡ 106 m3 s−1) through the Samoan Passage. A recent field campaign has shown that this flow is hydraulically controlled and that it experiences hydraulic jumps accompanied by strong mixing and dissipation concentrated near several deep sills. By our estimates, the diapycnal density flux associated with this mixing is considerably larger than the diapycnal flux across a typical isopycnal surface extending over the abyssal North Pacific. According to historical hydrographic observations, a second source of abyssal water for the North Pacific is 2.3–2.8 Sv of the dense flow that is diverted around the Manihiki Plateau to the east, bypassing the Samoan Passage. This bypass flow is not confined to a channel and is therefore less likely to experience the strong mixing that is associated with hydraulic transitions. The partitioning of flux between the two branches of the deep flow could therefore be relevant to the distribution of Pacific abyssal mixing. To gain insight into the factors that control the partitioning between these two branches, we develop an abyssal and equator-proximal extension of the “island rule.” Novel features include provisions for the presence of hydraulic jumps as well as identification of an appropriate integration circuit for an abyssal layer to the east of the island. Evaluation of the corresponding circulation integral leads to a prediction of 0.4–2.4 Sv of bypass flow. The circulation integral clearly identifies dissipation and frictional drag effects within the Samoan Passage as crucial elements in partitioning the flow.

Description: This work was supported by the National Science Foundation under Grants OCE-1029268, OCE-1029483, OCE-1657264, OCE-1657870, OCE-1658027, and OCE-1657795. We thank the captain, crew, and engineers at APL/UW for their hard work and skill.

Description: 2020-06-11

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Luis, K. M. A., Rheuban, J. E., Kavanaugh, M. T., Glover, D. M., Wei, J., Lee, Z., & Doney, S. C. Capturing coastal water clarity variability with Landsat 8. Marine Pollution Bulletin, 145, (2019): 96-104, doi: 10.1016/j.marpolbul.2019.04.078.

Description: Coastal water clarity varies at high temporal and spatial scales due to weather, climate, and human activity along coastlines. Systematic observations are crucial to assessing the impact of water clarity change on aquatic habitats. In this study, Secchi disk depths (ZSD) from Boston Harbor, Buzzards Bay, Cape Cod Bay, and Narragansett Bay water quality monitoring organizations were compiled to validate ZSD derived from Landsat 8 (L8) imagery, and to generate high spatial resolution ZSD maps. From 58 L8 images, acceptable agreement was found between in situ and L8 ZSD in Buzzards Bay (N = 42, RMSE = 0.96 m, MAPD = 28%), Cape Cod Bay (N = 11, RMSE = 0.62 m, MAPD = 10%), and Narragansett Bay (N = 8, RMSE = 0.59 m, MAPD = 26%). This work demonstrates the value of merging in situ ZSD with high spatial resolution remote sensing estimates for improved coastal water quality monitoring.

Description: This work was supported by the John D. and Catherine T. MacArthur Foundation (grant 14-106159-000-CFP) and by the National Science Foundation grant DGE 1249946, Integrative Graduate Education and Research Traineeship (IGERT): Coasts and Communities – Natural and Human Systems in Urbanizing Environments. Lastly, we are indebted to the Massachusetts Water Resources Authority, Buzzards Bay Coalition, Provincetown Center for Coastal Studies, Narragansett Bay Commission, and the numerous citizen scientists responsible for collecting the in situ measurements used in this study. Comments and suggestions from our anonymous reviewer were greatly appreciated.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2337-2343, doi:10.1175/JPO-D-19-0097.1.

Description: The weakly unstable, two-layer model of baroclinic instability is studied in a configuration in which the flow is perturbed at the inflow section of a channel by a slow and periodic perturbation. In a parameter regime where the governing equation would be the Lorenz equations for chaos if the development occurs only in time, the solution behavior becomes considerably more complex as a function of time and downstream coordinate. In the absence of the beta effect it has earlier been shown that the chaotic behavior along characteristics renders the solution nearly discontinuous in the slow downstream coordinate of the asymptotic model. The additional presence of the beta effect, although expunging the chaos for large enough values of the beta parameter, also provides an additional mechanism for abrupt spatial change.

Description: 2020-02-28

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric Sciences 76(10), (2019): 3013-3027, doi:10.1175/JAS-D-19-0095.1.

Description: Recently Nakamura and Huang proposed a semiempirical, one-dimensional model of atmospheric blocking based on the observed budget of local wave activity in the boreal winter. The model dynamics is akin to that of traffic flow, wherein blocking manifests as traffic jams when the streamwise flux of local wave activity reaches capacity. Stationary waves modulate the jet stream’s capacity to transmit transient waves and thereby localize block formation. Since the model is inexpensive to run numerically, it is suited for computing blocking statistics as a function of climate variables from large-ensemble, parameter sweep experiments. We explore sensitivity of blocking statistics to (i) stationary wave amplitude, (ii) background jet speed, and (iii) transient eddy forcing, using frequency, persistence, and prevalence as metrics. For each combination of parameters we perform 240 runs of 180-day simulations with aperiodic transient eddy forcing, each time randomizing the phase relations in forcing. The model climate shifts rapidly from a block-free state to a block-dominant state as the stationary wave amplitude is increased and/or the jet speed is decreased. When eddy forcing is increased, prevalence increases similarly but frequency decreases as blocks merge and become more persistent. It is argued that the present-day climate lies close to the boundary of the two states and hence its blocking statistics are sensitive to climate perturbations. The result underscores the low confidence in GCM-based assessment of the future trend of blocking under a changing climate, while it also provides a theoretical basis for evaluating model biases and understanding trends in reanalysis data.

Description: The main results of this paper emerged from a group project during Rossbypalooza, a student-led summer school at the University of Chicago in June 2018, with the theme of “Understanding climate through simple models.” The authors thank the participants of the summer school for their valuable feedback. Constructive criticisms of the two anonymous reviewers greatly improved the quality of the manuscript. The work is supported by NSF Grants AGS1563307 and AGS1810964

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1973-1994, doi: 10.1175/JPO-D-18-0194.1.

Description: Using 18 days of field observations, we investigate the diurnal (D1) frequency wave dynamics on the Tasmanian eastern continental shelf. At this latitude, the D1 frequency is subinertial and separable from the highly energetic near-inertial motion. We use a linear coastal-trapped wave (CTW) solution with the observed background current, stratification, and shelf bathymetry to determine the modal structure of the first three resonant CTWs. We associate the observed D1 velocity with a superimposed mode-zero and mode-one CTW, with mode one dominating mode zero. Both the observed and mode-one D1 velocity was intensified near the thermocline, with stronger velocities occurring when the thermocline stratification was stronger and/or the thermocline was deeper (up to the shelfbreak depth). The CTW modal structure and amplitude varied with the background stratification and alongshore current, with no spring–neap relationship evident for the observed 18 days. Within the surface and bottom Ekman layers on the shelf, the observed velocity phase changed in the cross-shelf and/or vertical directions, inconsistent with an alongshore propagating CTW. In the near-surface and near-bottom regions, the linear CTW solution also did not match the observed velocity, particularly within the bottom Ekman layer. Boundary layer processes were likely causing this observed inconsistency with linear CTW theory. As linear CTW solutions have an idealized representation of boundary dynamics, they should be cautiously applied on the shelf.

Description: An Australian Research Council Discovery Project (DP 140101322), and a UWA Research Collaboration Award funded this work. T. L. Schlosser acknowledges the support of an Australian Government Research Training Program (RTP) Scholarship. We thank the crew, volunteers and scientists who aided in the field data collection aboard the R/V Revelle, which was funded by the National Science Foundation (OCE-1129763). The continental slope moorings, T4 (M32) and T3 (M44), were also funded by the National Science Foundation (OCE-1129763) and were conceived, planned, and executed by Matthew Alford, Jennifer Mackinnon, Jonathan Nash, Harper Simmons, and Gunnar Voet. We also thank Harper Simmons for the combined R/V Revelle multibeam and Geoscience Australia bathymetry used in this study. We thank the two anonymous reviewers whose comments improved this work.

Description: 2020-01-16

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Semper, S., Vage, K., Pickart, R. S., Valdimarsson, H., Torres, D. J., & Jonsson, S. The emergence of the North Icelandic Jet and its evolution from northeast Iceland to Denmark Strait. Journal of Physical Oceanography, 49(10), (2019): 2499-2521, doi:10.1175/JPO-D-19-0088.1.

Description: The North Icelandic Jet (NIJ) is an important source of dense water to the overflow plume passing through Denmark Strait. The properties, structure, and transport of the NIJ are investigated for the first time along its entire pathway following the continental slope north of Iceland, using 13 hydrographic/velocity surveys of high spatial resolution conducted between 2004 and 2018. The comprehensive dataset reveals that the current originates northeast of Iceland and increases in volume transport by roughly 0.4 Sv (1 Sv ≡ 106 m3 s−1) per 100 km until 300 km upstream of Denmark Strait, at which point the highest transport is reached. The bulk of the NIJ transport is confined to a small area in Θ–S space centered near −0.29° ± 0.16°C in Conservative Temperature and 35.075 ± 0.006 g kg−1 in Absolute Salinity. While the hydrographic properties of this transport mode are not significantly modified along the NIJ’s pathway, the transport estimates vary considerably between and within the surveys. Neither a clear seasonal signal nor a consistent link to atmospheric forcing was found, but barotropic and/or baroclinic instability is likely active in the current. The NIJ displays a double-core structure in roughly 50% of the occupations, with the two cores centered at the 600- and 800-m isobaths, respectively. The transport of overflow water 300 km upstream of Denmark Strait exceeds 1.8 ± 0.3 Sv, which is substantially larger than estimates from a year-long mooring array and hydrographic/velocity surveys closer to the strait, where the NIJ merges with the separated East Greenland Current. This implies a more substantial contribution of the NIJ to the Denmark Strait overflow plume than previously envisaged.

Description: Six different research vessels were involved in the collection of the data used in this study: RRS James Clark Ross, R/V Knorr, R/V Bjarni Sæmundsson, R/V Håkon Mosby, NRV Alliance, and R/V Kristine Bonnevie. We thank the captain and crew of each of these vessels for their hard work as well as the many watch standers who have sailed on the cruises and helped collect the measurements. We also thank Frank Bahr for processing the VMADCP data collected on NRV Alliance and Magnús Danielsen for the processing of the hydrographic data collected on R/V Bjarni Sæmundsson. We acknowledge Leah Trafford McRaven for assistance with Fig. 1 and two anonymous reviewers for their helpful comments, which improved the manuscript. Funding for the project was provided by the Bergen Research Foundation Grant BFS2016REK01 (K. Våge and S. Semper), the Norwegian Research Council under Grant Agreement 231647 (K. Våge), and the U.S. National Science Foundation Grants OCE-1259618 and OCE-1756361 (R. S. Pickart and D. J. Torres), as well as OCE-1558742 (R. S. Pickart). The dataset is available on PANGAEA under https://doi.pangaea.de/10.1594/PANGAEA.903535.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(13), (2019): 3883-3898, doi:10.1175/JCLI-D-18-0735.1.

Description: While it has generally been understood that the production of Labrador Sea Water (LSW) impacts the Atlantic meridional overturning circulation (MOC), this relationship has not been explored extensively or validated against observations. To explore this relationship, a suite of global ocean–sea ice models forced by the same interannually varying atmospheric dataset, varying in resolution from non-eddy-permitting to eddy-permitting (1°–1/4°), is analyzed to investigate the local and downstream relationships between LSW formation and the MOC on interannual to decadal time scales. While all models display a strong relationship between changes in the LSW volume and the MOC in the Labrador Sea, this relationship degrades considerably downstream of the Labrador Sea. In particular, there is no consistent pattern among the models in the North Atlantic subtropical basin over interannual to decadal time scales. Furthermore, the strong response of the MOC in the Labrador Sea to LSW volume changes in that basin may be biased by the overproduction of LSW in many models compared to observations. This analysis shows that changes in LSW volume in the Labrador Sea cannot be clearly and consistently linked to a coherent MOC response across latitudes over interannual to decadal time scales in ocean hindcast simulations of the last half century. Similarly, no coherent relationships are identified between the MOC and the Labrador Sea mixed layer depth or the density of newly formed LSW across latitudes or across models over interannual to decadal time scales.

Description: FL and MSL are thankful for the financial support from the National Science Foundation (NSF) Physical Oceanography Program (NSF-OCE-12-59102, NSF-OCE-12-59103). The NCAR contribution was supported by the National Oceanic and Atmospheric Administration (NOAA) Climate Program Office (CPO) under Climate Variability and Predictability Program (CVP) Grant NA13OAR4310138 and by the NSF Collaborative Research EaSM2 Grant OCE-1243015. NCAR is sponsored by the NSF. NPH is supported by NERC programs U.K. OSNAP (NE/K010875) and ACSIS (National Capability, NE/N018044/1). Y-OK is supported by NOAA CPO CVP (NA17OAR4310111) and NSF EaSM2 grant (OCE-1242989). AR is supported by NASA-ROSES Modeling, Analysis and Prediction 2016 NNX16AC93G-MAP. RZ is supported by NOAA/OAR. Argo data were collected and made freely available by the International Argo Program and the national programs that contribute to it (http://www.argo.ucsd.edu, http://argo.jcommops.org). The Argo Program is part of the Global Ocean Observing System (http://doi.org/10.17882/42182). Data from the RAPID-MOCHA-WBTS array funded by NERC, NSF and NOAA are freely available from www.rapid.ac.uk/rapidmoc. We thank Stephen Griffies for providing access to the GFDL-MOM025 COREII simulation output and Matthew Harrison and Xiaoqin Yan for their comments on the manuscript. We also thank the anonymous reviewers for their valuable comments.

Description: 2020-06-11

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2237-2254, doi: 10.1175/JPO-D-18-0181.1.

Description: A cluster of 45 drifters deployed in the Bay of Bengal is tracked for a period of four months. Pair dispersion statistics, from observed drifter trajectories and simulated trajectories based on surface geostrophic velocity, are analyzed as a function of drifter separation and time. Pair dispersion suggests nonlocal dynamics at submesoscales of 1–20 km, likely controlled by the energetic mesoscale eddies present during the observations. Second-order velocity structure functions and their Helmholtz decomposition, however, suggest local dispersion and divergent horizontal flow at scales below 20 km. This inconsistency cannot be explained by inertial oscillations alone, as has been reported in recent studies, and is likely related to other nondispersive processes that impact structure functions but do not enter pair dispersion statistics. At scales comparable to the deformation radius LD, which is approximately 60 km, we find dynamics in agreement with Richardson’s law and observe local dispersion in both pair dispersion statistics and second-order velocity structure functions.

Description: This research was supported by the Air Sea Interaction Regional Initiative (ASIRI) under ONR Grant N00014-13-1-0451 (SE and AM) and ONR Grant N00014-13-1-0477 (VH and LC). Additionally, AM and SE thank NSF (Grant OCE-I434788) and ONR (Grant N00014-16-1-2470) for support; VH and LC were further supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156. We thank Joe LaCasce, Dhruv Balwada, and one anonymous reviewer for helpful comments and discussions that significantly improved this manuscript. The authors thank the captain and crew of the R/V Roger Revelle. The SVP-type drifters are part of the Global Drifter Program and supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156 and are available under http://www.aoml.noaa.gov/phod/dac/. The Ssalto/Duacs altimeter products were produced and distributed by the Copernicus Marine and Environment Monitoring Service (CMEMS, http://www.marine.copernicus.eu).

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 36(10), (2019): 1997-2014, doi: 10.1175/JTECH-D-19-0029.1.

Description: While land-based high-frequency (HF) radars are the only instruments capable of resolving both the temporal and spatial variability of surface currents in the coastal ocean, recent high-resolution views suggest that the coastal ocean is more complex than presently deployed radar systems are able to reveal. This work uses a hybrid system, having elements of both phased arrays and direction finding radars, to improve the azimuthal resolution of HF radars. Data from two radars deployed along the U.S. East Coast and configured as 8-antenna grid arrays were used to evaluate potential direction finding and signal, or emitter, detection methods. Direction finding methods such as maximum likelihood estimation generally performed better than the well-known multiple signal classification (MUSIC) method given identical emitter detection methods. However, accurately estimating the number of emitters present in HF radar observations is a challenge. As MUSIC’s direction-of-arrival (DOA) function permits simple empirical tests that dramatically aid the detection process, MUSIC was found to be the superior method in this study. The 8-antenna arrays were able to provide more accurate estimates of MUSIC’s noise subspace than typical 3-antenna systems, eliminating the need for a series of empirical parameters to control MUSIC’s performance. Code developed for this research has been made available in an online repository.

Description: This analysis was supported by NSF Grants OCE-1657896 and OCE-1736930 to Kirincich, OCE-1658475 to Emery and Washburn and OCE-1736709 to Flament. Flament is also supported by NOAA’s Integrated Ocean Observing System through Award NA11NOS0120039. The authors thank Lindsey Benjamin, Alma Castillo, Ken Constantine, Benedicte Dousset, Ian Fernandez, Mael Flament, Dave Harris, Garrett Hebert, Ben Hodges, Victoria Futch, Matt Guanci, and Philip Moravcik for assistance in building, deploying, and operating the radars.

Description: 2020-04-11

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(8), (2019): 2185-2205. doi:10.1175/JCLI-D-18-0538.1.

Description: Much attention has been paid to the climatic impacts of changes in the Kuroshio Extension, instead of the Kuroshio in the East China Sea (ECS). This study, however, reveals the prominent influences of the lateral shift of the Kuroshio at interannual time scale in late spring [April–June (AMJ)] on the sea surface temperature (SST) and precipitation in summer around the ECS, based on high-resolution satellite observations and ERA-Interim. A persistent offshore displacement of the Kuroshio during AMJ can result in cold SST anomalies in the northern ECS and the Japan/East Sea until late summer, which correspondingly causes anomalous cooling of the lower troposphere. Consequently, the anomalous cold SST in the northern ECS acts as a key driver to robustly enhance the precipitation from the Yangtze River delta to Kyushu in early summer (May–August) and over the central ECS in late summer (July–September). In view of the moisture budget analysis, two different physical processes modulated by the lateral shift of the Kuroshio are identified to account for the distinct responses of precipitation in early and late summer, respectively. First, the anomalous cold SST in the northern ECS induced by the Kuroshio offshore shift is likely conducive to the earlier arrival of the mei-yu–baiu front at 30°–32°N and its subsequent slower northward movement, which may prolong the local rainy season, leading to the increased rain belt in early summer. Second, the persistent cold SST anomalies in late summer strengthen the near-surface baroclinicity and the associated strong atmospheric fronts embedded in the extratropical cyclones over the central ECS, which in turn enhances the local rainfall.

Description: We appreciate three anonymous reviewers for their thoughtful and constructive comments. This work is supported by the National Key Research and Development Program of China (2016YFA0601804), the National Natural Science Foundation of China (NSFC) Projects (91858102, 41490643, 41490640, 41506009, U1606402) and the OUC–WHOI joint research program (21366).

Description: 2019-10-01

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chelton, D. B., Schlax, M. G., Samelson, R. M., Farrar, J. T., Molemaker, M. J., McWilliams, J. C., & Gula, J. Prospects for future satellite estimation of small-scale variability of ocean surface velocity and vorticity. Progress in Oceanography, 173, (2019):256-350, doi:0.1016/j.pocean.2018.10.012.

Description: Recent technological developments have resulted in two techniques for estimating surface velocity with higher resolution than can be achieved from presently available nadir altimeter data: (1) Geostrophically computed estimates from high-resolution sea surface height (SSH) measured interferometrically by the wide-swath altimeter on the Surface Water and Ocean Topography (SWOT) Mission with a planned launch in 2021; and (2) Measurements of ocean surface velocity from a Doppler scatterometer mission that is in the early planning stages, referred to here as a Winds and Currents Mission (WaCM). In this study, we conduct an analysis of the effects of uncorrelated measurement errors and sampling errors on the errors of the measured and derived variables of interest (SSH and geostrophically computed velocity and vorticity for SWOT, and surface velocity and vorticity for WaCM). Our analysis includes derivations of analytical expressions for the variances and wavenumber spectra of the errors of the derived variables, which will be useful to other studies based on simulated SWOT and WaCM estimates of velocity and vorticity. We also discuss limitations of the geostrophic approximation that must be used for SWOT estimates of velocity. The errors of SWOT and WaCM estimates of velocity and vorticity at the full resolutions of the measured variables are too large for the unsmoothed estimates to be scientifically useful. It will be necessary to smooth the data to reduce the noise variance. We assess the resolution capabilities of smoothed estimates of velocity and vorticity from simulated noisy SWOT and WaCM data based on a high-resolution model of the California Current System (CCS). By our suggested minimum threshold signal-to-noise (S/N) variance ratio of 10 (a standard deviation ratio of 3.16), we conclude that the wavelength resolution capabilities of maps of velocity and vorticity constructed from WaCM data with a swath width of 1200 km are, respectively, about 60 km and 90 km in 4-day averages. For context, the radii of resolvable features are about four times smaller than these mesoscale wavelength resolutions. If the swath width can be increased to 1800 km, the wavelength resolution capabilities of 4-day average maps of surface velocity and vorticity would improve to about 45 km and 70 km, respectively. Reducing the standard deviation of the uncorrelated measurement errors from the baseline value of m s−1 to a value of 0.25 m s−1 would further improve these resolution capabilities to about 20 km and 45 km. SWOT data will allow mapping of the SSH field with far greater accuracy and space–time resolution than are presently achieved by merging the data from multiple nadir altimeter missions. However, because of its much narrower 120-km measurement swath compared with WaCM and the nature of the space–time evolution of the sampling pattern during each 21-day repeat of the SWOT orbit, maps of geostrophically computed velocity and vorticity averaged over the 14-day period that is required for SWOT to observe the full CCS model domain are contaminated by sampling errors that are too large for the estimates to be useful for any amount of smoothing considered here. Reducing the SSH measurement errors would do little to improve SWOT maps of velocity and vorticity. SWOT estimates of these variables are likely to be useful only within individual measurement swaths or with the help of dynamic interpolation from a data assimilation model. By our criterion, in-swath SWOT estimates of velocity and vorticity have wavelength resolution capabilities of about 30 km and 55 km, respectively. In comparison, in-swath estimates of velocity and vorticity from WaCM data with m s−1 have a wavelength resolution capability of about 130 km for both variables. Reducing the WaCM measurement errors to m s−1 would improve the resolution capabilities to about 50 km and 75 km for velocity and vorticity, respectively. These resolutions are somewhat coarser than the in-swath estimates from SWOT data, but the swath width is more than an order of magnitude wider for WaCM. Instantaneous maps of velocity and vorticity constructed in-swath from WaCM data will therefore be much less prone to edge effect problems in the spatially smoothed fields. Depending on the precise value of the threshold adopted for the minimum S/N ratio and on the details of the filter used to smooth the SWOT and WaCM data, the resolution capabilities summarized above may be somewhat pessimistic. On the other hand, aspects of measurement errors and sampling errors that have not been accounted for in this study will worsen the resolution capabilities presented here. Another caveat to keep in mind is that the resolution capabilities deduced here from simulations of the CCS region during summertime may differ somewhat at other times of year and in other geographical regions where the signal variances and wavenumber spectra of the variables of interest differ from the CCS model used in this study. Our analysis nonetheless provides useful guidelines for the resolutions that can be expected from SWOT and WaCM.

Description: We thank Ralph Milliff, Bo Qiu, Ernesto Rodríguez and Lee-Lueng Fu for many helpful editorial comments and suggestions that improved the manuscript. This research was funded by NASA Grants NNX13AD78G, NNX14AM72G, NNX13AE32G, NNX14AM66G, NNX16AH76G,NNX14AM71G and NNX17AH54G. The two North Atlantic Ocean simulations in this study were performed using HPC resources from GENCI-TGCC with support from Grant 2017-A0010107638 for Jonathan Gula.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(4), (2019): 1035-1053, doi:10.1175/JPO-D-18-0136.1.

Description: Ocean stratification and the vertical extent of the mixed layer influence the rate at which the ocean and atmosphere exchange properties. This process has direct impacts for anthropogenic heat and carbon uptake in the Southern Ocean. Submesoscale instabilities that evolve over space (1–10 km) and time (from hours to days) scales directly influence mixed layer variability and are ubiquitous in the Southern Ocean. Mixed layer eddies contribute to mixed layer restratification, while down-front winds, enhanced by strong synoptic storms, can erode stratification by a cross-frontal Ekman buoyancy flux. This study investigates the role of these submesoscale processes on the subseasonal and interannual variability of the mixed layer stratification using four years of high-resolution glider data in the Southern Ocean. An increase of stratification from winter to summer occurs due to a seasonal warming of the mixed layer. However, we observe transient decreases in stratification lasting from days to weeks, which can arrest the seasonal restratification by up to two months after surface heat flux becomes positive. This leads to interannual differences in the timing of seasonal restratification by up to 36 days. Parameterizing the Ekman buoyancy flux in a one-dimensional mixed layer model reduces the magnitude of stratification compared to when the model is run using heat and freshwater fluxes alone. Importantly, the reduced stratification occurs during the spring restratification period, thereby holding important implications for mixed layer dynamics in climate models as well as physical–biological coupling in the Southern Ocean.

Description: MdP acknowledges numerous research visits to the Department of Marine Science, University of Gothenburg, and a visit to Woods Hole Oceanographic Institution, which greatly enhanced this work. We thank SANAP and the captain and crew of the S.A. Agulhas II for their assistance in the deployment and retrieval of the gliders. We acknowledge the work of SAMERC-STS for housing, managing, and piloting the gliders. SS was supported by NRF-SANAP Grant SNA14071475720 and a Wallenberg Academy Fellowship (WAF 2015.0186). Lastly, SS thanks the numerous technical assistance, advice, and IOP hosting provided by Geoff Shilling and Craig Lee of the Applied Physics Laboratory, University of Washington.

Description: 2020-04-11

Description: The 2017 North Atlantic right whale (NARW) unusual mortality event and an increase in humpback whale entanglements off the U.S. West Coast have driven significant interest in ropeless trap/pot fishing. Removing the vertical buoy lines used to mark traps on the sea floor and haul them up would dramatically reduce or eliminate entanglements, the leading cause of NARW mortality, while potentially allowing fishermen to harvest in areas that would otherwise need to be closed to protect whales. At the first annual Ropeless Consortium meeting, researchers, fishing industry representatives, manufacturers, conservationists, and regulators discussed existing and developing technological replacements for the marking and retrieval functions of buoy lines. Fishermen and NGO partners shared their experience demonstrating ropeless systems and provided feedback to improve the designs. U.S. and Canadian federal regulators discussed prospects to use ropeless fishing gear in areas closed to fishing with vertical lines, as well as other options to reduce entanglements, and a Massachusetts official shared additional regulatory considerations involved in ropeless fishing in state waters. Sustainable seafood experts discussed consumer market advantages and endangered, threatened, and protected species impacts in sustainability standards and certifications. Moving forward, there is an immediate need to (1) work with industry partners to iteratively test and improve ropeless retrieval and marking systems to adapt them to the specific conditions of the relevant trap/pot fisheries, (2) create data sharing and communications protocols for ropeless gear location marking, and (3) develop regulatory procedures and enforcement capacity to allow legal ropeless gear use.

Description: This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.

Description: 2020-06-22

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1639-1649, doi: 10.1175/JPO-D-18-0154.1.

Description: Using a recently developed asymptotic theory of internal solitary wave propagation over a sloping bottom in a rotating ocean, some new qualitative and quantitative features of this process are analyzed for internal waves in a two-layer ocean. The interplay between different singularities—terminal damping due to radiation and disappearing quadratic nonlinearity, and reaching an “internal beach” (e.g., zero lower-layer depth)—is discussed. Examples of the adiabatic evolution of a single solitary wave over a uniformly sloping bottom under realistic conditions are considered in more detail and compared with numerical solutions of the variable-coefficient, rotation-modified Korteweg–de Vries (rKdV) equation.

Description: LAO is thankful to Yu. Stepanyants for broad discussions of mutual benefit. KRH was supported by Grant N00014-18-1-2542 from the Office of Naval Research.

Description: 2020-06-13

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society, 100(5), (2019): 897-908, doi:10.1175/BAMS-D-19-0130.1.

Description: As states, cities, tribes, and private interests cope with climate damages and seek to increase preparedness and resilience, they will need to navigate myriad choices and options available to them. Making these choices in ways that identify pathways for climate action that support their development objectives will require constructive public dialogue, community participation, and flexible and ongoing access to science- and experience-based knowledge. In 2016, a Federal Advisory Committee (FAC) was convened to recommend how to conduct a sustained National Climate Assessment (NCA) to increase the relevance and usability of assessments for informing action. The FAC was disbanded in 2017, but members and additional experts reconvened to complete the report that is presented here. A key recommendation is establishing a new nonfederal “climate assessment consortium” to increase the role of state/local/tribal government and civil society in assessments. The expanded process would 1) focus on applied problems faced by practitioners, 2) organize sustained partnerships for collaborative learning across similar projects and case studies to identify effective tested practices, and 3) assess and improve knowledge-based methods for project implementation. Specific recommendations include evaluating climate models and data using user-defined metrics; improving benefit–cost assessment and supporting decision-making under uncertainty; and accelerating application of tools and methods such as citizen science, artificial intelligence, indicators, and geospatial analysis. The recommendations are the result of broad consultation and present an ambitious agenda for federal agencies, state/local/tribal jurisdictions, universities and the research sector, professional associations, nongovernmental and community-based organizations, and private-sector firms.

Description: This report would not have been possible without the support and participation of numerous organizations and individuals. We thank New York State Governor Andrew M. Cuomo for announcing in his 2018 State of the State agenda that the IAC would be reconvened. The New York State Energy Research and Development Authority (Contract ID 123416), Columbia University’s Earth Institute, and the American Meteorological Society provided essential financial support and much more, including sage advice and moral support from John O’Leary, Shara Mohtadi, Steve Cohen, Alex Halliday, Peter deMenocal, Keith Seitter, Paul Higgins, and Bill Hooke. We thank the attendees of a workshop, generously funded by the Kresge Foundation in November of 2017, that laid a foundation for the idea to establish a civil-society-based assessment consortium. During the course of preparing the report, IAC members consulted with individuals too numerous to list here—state, local, and tribal officials; researchers; experts in nongovernmental and community-based organizations; and professionals in engineering, architecture, public health, adaptation, and other areas. We are so grateful for their time and expertise. We thank the members and staff of the National Academy of Sciences, Engineering, and Medicine’s Committee to Advise the U.S. Global Change Research Program for providing individual comments on preliminary recommendations during several discussions in open sessions of their meetings. The following individuals provided detailed comments on an earlier version of this report, which greatly sharpened our thinking and recommendations: John Balbus, Tom Dietz, Phil Duffy, Baruch Fischhoff, Brenda Hoppe, Melissa Kenney, Linda Mearns, Claudia Nierenberg, Kathleen Segerson, Soroosh Sorooshian, Chris Weaver, and Brian Zuckerman. Mary Black provided insightful copy editing of several versions of the report. We also thank four anonymous reviewers for their effort and care in critiquing and improving the report. It is the dedication, thoughtful feedback, expertise, care, and commitment of all these people and more that not only made this report possible, but allow us all to continue to support smart and insightful actions in a changing climate. We are grateful as authors and as global citizens. Author contributions: RM, SA, KB, MB, AC, JD, PF, KJ, AJ, KK, JK, ML, JM, RP, TR, LS, JS, JW, and DZ were members of the IAC and shared in researching, discussing, drafting, and approving the report. BA, JF, AG, LJ, SJ, PK, RK, AM, RM, JN, WS, JS, PT, GY, and RZ contributed to specific sections of the report.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019):1463-1483, doi: 10.1175/JPO-D-18-0213.1.

Description: A set of float trajectories, deployed at 1500- and 2500-m depths throughout the deep Gulf of Mexico from 2011 to 2015, are analyzed for mesoscale processes under the Loop Current (LC). In the eastern basin, December 2012–June 2014 had 〉40 floats per month, which was of sufficient density to allow capturing detailed flow patterns of deep eddies and topographic Rossby waves (TRWs), while two LC eddies formed and separated. A northward advance of the LC front compresses the lower water column and generates an anticyclone. For an extended LC, baroclinic instability eddies (of both signs) develop under the southward-propagating large-scale meanders of the upper-layer jet, resulting in a transfer of eddy kinetic energy (EKE) to the lower layer. The increase in lower-layer EKE occurs only over a few months during meander activity and LC eddy detachment events, a relatively short interval compared with the LC intrusion cycle. Deep EKE of these eddies is dispersed to the west and northwest through radiating TRWs, of which examples were found to the west of the LC. Because of this radiation of EKE, the lower layer of the eastern basin becomes relatively quiescent, particularly in the northeastern basin, when the LC is retracted and a LC eddy has departed. A mean west-to-east, anticyclone–cyclone dipole flow under a mean LC was directly comparable to similar results from a previous moored LC array and also showed connections to an anticlockwise boundary current in the southeastern basin.

Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M08PC20043 to Leidos, Inc., Raleigh, NC. The authors also wish to acknowledge the enthusiastic support of Dr. Alexis Lugo-Fernández, the BOEM Contracting Officer’s Technical Representative, during the study into the Deep Circulation of the Gulf of Mexico, using Lagrangian Methods. Thanks go to the captains and crews of the R/V Pelican and B/O Justo Sierra, J. Malbrough (LUMCON), J. Singer (Leidos), J. Valdes (WHOI), B. Guest (WHOI), and the CANEK group (CICESE).

Description: 2020-05-29

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 36(4), (2019): 733-744, doi:10.1175/JTECH-D-18-0050.1.

Description: Sea-Bird Scientific SBE 41CP CTDs are used on autonomous floats in the global Argo ocean observing program to measure the temperature and salinity of the upper ocean. While profiling, the sensors are subject to dynamic errors as they profile through vertical gradients. Applying dynamic corrections to the temperature and conductivity data reduces these errors and improves sensor accuracy. A series of laboratory experiments conducted in a stratified tank are used to characterize dynamic errors and determine corrections. The corrections are adapted for Argo floats, and recommendations for future implementation are presented.

Description: 2020-04-23

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Weather Climate and Society 11(3), (2019):465-487, doi: 10.1175/WCAS-D-18-0134.1.

Description: As states, cities, tribes, and private interests cope with climate damages and seek to increase preparedness and resilience, they will need to navigate myriad choices and options available to them. Making these choices in ways that identify pathways for climate action that support their development objectives will require constructive public dialogue, community participation, and flexible and ongoing access to science- and experience-based knowledge. In 2016, a Federal Advisory Committee (FAC) was convened to recommend how to conduct a sustained National Climate Assessment (NCA) to increase the relevance and usability of assessments for informing action. The FAC was disbanded in 2017, but members and additional experts reconvened to complete the report that is presented here. A key recommendation is establishing a new nonfederal “climate assessment consortium” to increase the role of state/local/tribal government and civil society in assessments. The expanded process would 1) focus on applied problems faced by practitioners, 2) organize sustained partnerships for collaborative learning across similar projects and case studies to identify effective tested practices, and 3) assess and improve knowledge-based methods for project implementation. Specific recommendations include evaluating climate models and data using user-defined metrics; improving benefit–cost assessment and supporting decision-making under uncertainty; and accelerating application of tools and methods such as citizen science, artificial intelligence, indicators, and geospatial analysis. The recommendations are the result of broad consultation and present an ambitious agenda for federal agencies, state/local/tribal jurisdictions, universities and the research sector, professional associations, nongovernmental and community-based organizations, and private-sector firms.

Description: This report would not have been possible without the support and participation of numerous organizations and individuals. We thank New York State Governor Andrew M. Cuomo for announcing in his 2018 State of the State agenda that the IAC would be reconvened. The New York State Energy Research and Development Authority (Contract ID 123416), Columbia University’s Earth Institute, and the American Meteorological Society provided essential financial support and much more, including sage advice and moral support from John O’Leary, Shara Mohtadi, Steve Cohen, Alex Halliday, Peter deMenocal, Keith Seitter, Paul Higgins, and Bill Hooke. We thank the attendees of a workshop, generously funded by the Kresge Foundation in November of 2017, that laid a foundation for the idea to establish a civil-society-based assessment consortium. During the course of preparing the report, IAC members consulted with individuals too numerous to list here—state, local, and tribal officials; researchers; experts in nongovernmental and community-based organizations; and professionals in engineering, architecture, public health, adaptation, and other areas. We are so grateful for their time and expertise. We thank the members and staff of the National Academy of Sciences, Engineering, and Medicine’s Committee to Advise the U.S. Global Change Research Program for providing individual comments on preliminary recommendations during several discussions in open sessions of their meetings. The following individuals provided detailed comments on an earlier version of this report, which greatly sharpened our thinking and recommendations: John Balbus, Tom Dietz, Phil Duffy, Baruch Fischhoff, Brenda Hoppe, Melissa Kenney, Linda Mearns, Claudia Nierenberg, Kathleen Segerson, Soroosh Sorooshian, Chris Weaver, and Brian Zuckerman. Mary Black provided insightful copy editing of several versions of the report. We also thank four anonymous reviewers for their effort and care in critiquing and improving the report. It is the dedication, thoughtful feedback, expertise, care, and commitment of all these people and more that not only made this report possible, but allow us all to continue to support smart and insightful actions in a changing climate. We are grateful as authors and as global citizens. Author contributions: RM, SA, KB, MB, AC, JD, PF, KJ, AJ, KK, JK, ML, JM, RP, TR, LS, JS, JW, and DZ were members of the IAC and shared in researching, discussing, drafting, and approving the report. BA, JF, AG, LJ, SJ, PK, RK, AM, RM, JN, WS, JS, PT, GY, and RZ contributed to specific sections of the report.

Description: 2020-05-21

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019):1619-1637, doi:10.1175/JPO-D-18-0175.1.

Description: Although the hydrodynamics of river meanders are well studied, the influence of curvature on flow in estuaries, with alternating tidal flow and varying water levels and salinity gradients, is less well understood. This paper describes a field study on curvature effects in a narrow salt-marsh creek with sharp bends. The key observations, obtained during times of negligible stratification, are 1) distinct differences between secondary flow during ebb and flood, with helical circulation as in rivers during ebb and a reversed circulation during flood, and 2) maximum (ebb and flood) streamwise velocities near the inside of the bend, unlike typical river bend flow. The streamwise velocity structure is explained by the lack of a distinct point bar and the relatively deep cross section in the estuary, which means that curvature-induced inward momentum redistribution is not overcome by outward redistribution by frictional and topographic effects. Through differential advection of the along-estuary salinity gradient, the laterally sheared streamwise velocity generates lateral salinity differences, with the saltiest water near the inside during flood. The resulting lateral baroclinic pressure gradient force enhances the standard helical circulation during ebb but counteracts it during flood. This first leads to a reversed secondary circulation during flood in the outer part of the cross section, which triggers a positive feedback mechanism by bringing slower-moving water from the outside inward along the surface. This leads to a reversal of the vertical shear in the streamwise flow, and therefore in the centrifugal force, which further enhances the reversed secondary circulation.

Description: This project was funded by NSF Grant OCE-1634490. During this work W.M. Kranenburg was supported as USGS Postdoctoral Scholar at Woods Hole Oceanographic Institution. A.M.P. Garcia was supported by the Michael J. Kowalski Fellowship in Ocean Science and Engineering (AMPG), and the Diversity Fellowship of the MIT Office of the Dean of Graduate Education (AMPG). The authors thank Jay Sisson for the technical support and Peter Traykovski for providing the bathymetric data. Also, the suggestions for improvement by Dr. K. Blanckaert and an anonymous reviewer are thankfully acknowledged.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 100(5), (2019): 909-912, doi: 10.1175/BAMS-D-18-0319.1.

Description: The open availability and wide accessibility of digital scientific resources, such as articles and datasets, is becoming the norm for twenty-first-century science. Geoscience researchers are now being asked by funding agencies and scientific publishers to archive and cite data to support open access but often struggle to understand, interpret, and fulfill these requirements. To fulfill the promise of new open data initiatives, 1) scientific resources (e.g., data and software) must be collected and documented properly; 2) repository services, including preservation and storage capabilities, must be maintained, supported, and improved over time; and 3) governance institutions must be established. These issues were discussed in the Geoscience Digital Data Resource and Repository Service (GeoDaRRS) workshop,1 held in August 2018, at NCAR. The workshop brought together more than 60 geoscience researchers, technology experts, scientific publishers, funders, and data repository personnel to discuss data management challenges and opportunities within the geosciences. This included exploring whether new services are needed to complement existing data facilities, particularly in the areas of 1) data management planning support resources and 2) repository services for geoscience researchers who have data that do not fit in any existing repository. More details on the workshop agenda and recommendations are available in the final workshop report (Mayernik et al. 2018).

Description: The National Science Foundation (NSF) provided the funding support for this workshop. We also thank Cecilia Banner and Elizabeth Faircloth of NCAR for administrative and logistical support.

Description: 2020-06-04

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1561-1575, doi:10.1175/JPO-D-19-0002.1.

Description: Within the pycnocline, where diapycnal mixing is suppressed, both the vertical movement (uplift) of isopycnal surfaces and upward motion along sloping isopycnals supply nutrients to the euphotic layer, but the relative importance of each of these mechanisms is unknown. We present a method for decomposing vertical velocity w into two components in a Lagrangian frame: vertical velocity along sloping isopycnal surfaces and the adiabatic vertical velocity of isopycnal surfaces . We show that , where is the isopycnal slope and is the geometric aspect ratio of the flow, and that accounts for 10%–25% of the total vertical velocity w for isopycnal slopes representative of the midlatitude pycnocline. We perform the decomposition of w in a process study model of a midlatitude eddying flow field generated with a range of isopycnal slopes. A spectral decomposition of the velocity components shows that while is the largest contributor to vertical velocity, is of comparable magnitude at horizontal scales less than about 10 km, that is, at submesoscales. Increasing the horizontal grid resolution of models is known to increase vertical velocity; this increase is disproportionately due to better resolution of , as is shown here by comparing 1- and 4-km resolution model runs. Along-isopycnal vertical transport can be an important contributor to the vertical flux of tracers, including oxygen, nutrients, and chlorophyll, although we find weak covariance between vertical velocity and nutrient anomaly in our model.

Description: MAF was supported by a National Defense Science and Engineering Graduate Fellowship and AM by NSF OCE-I434788. The authors thank Glenn Flierl and Ruth Curry for helpful conversations, and three anonymous reviewers for comments that improved the manuscript.

Description: 2020-06-11

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Donatelli, C., Ganju, N. K., Kalra, T. S., Fagherazzi, S., & Leonardi, N. (2019). Dataset of numerical modelling results of wave thrust on salt marsh boundaries with different seagrass coverages in a shallow back-barrier estuary. Data in Brief, 25, 104197, doi:10.1016/j.dib.2019.104197.

Description: This article contains data on the effects of seagrass decline on wave energy along the shoreline of Barnegat Bay (USA) previously evaluated in Donatelli et al., 2019. This study was carried out applying the Coupled-Ocean-Atmosphere-Wave-Sediment Transport (COAWST) numerical modelling framework to six historical maps of seagrass distribution. A new routine recently implemented in COAWST was used, which explicitly computes the wave thrust acting on salt marsh boundaries. The numerical modelling results are reported in terms of wind-wave heights for different seagrass coverages, wind speeds and directions. From a comparison with a numerical experiment without submerged aquatic vegetation, we show how the computed wave thrust on marsh boundaries can be reduced by seagrass beds.

Description: This study was supported by the Department of the Interior Hurricane Sandy Recovery program (ID G16AC00455, sub-award to University of Liverpool). S.F. was partly supported by NSF awards 1637630 (PIE LTER) and 1832221 (VCR LTER). We further acknowledge partial support from the Environmental Change Research group at University of Liverpool, and University of Liverpool library for publication fees.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hult, M., Charette, M., Lutter, G., Marissens, G., Henderson, P., Sobiech-Matura, K., & Simgen, H. Underground gamma-ray measurements of radium isotopes from hydrothermal plumes in the deep Pacific Ocean. Applied Radiation and Isotopes, 153, (2019): 108831, doi:10.1016/j.apradiso.2019.108831.

Description: The radium isotopes 226Ra and 228Ra can provide important data on the dynamics of deep-sea hydrothermal plumes that travel the oceans for decades and have great impact on the ocean chemistry. This study focuses on parameters important for obtaining low detection limits for 228Ra using gamma-ray spectrometry. It is present at mBq-levels in samples collected during the US GEOTRACES 2013 cruise to the Southeast Pacific Ocean.

Description: The work of the HADES-staff of Euridice at SCK•CEN is gratefully acknowledged. We are most grateful to Dr. Faidra Tzika for her work in the precursor to this project. Many thanks to Heiko Stroh for quality control and measurements in HADES. This research was supported in part by grants from the U.S. National Science Foundation, Ocean Sciences division (OCE-1232669 and OCE-1736277).

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 36(9), (2019): 1789-1812, doi:10.1175/JTECH-D-18-0223.1.

Description: Temporal vertical eddy viscosity coefficient (VEVC) in an Ekman layer model is estimated using an adjoint method. Twin experiments are carried out to investigate the influences of several factors on inversion results, and the conclusions of twin experiments are 1) the adjoint method is a capable method to estimate different kinds of temporal distributions of VEVCs; 2) the gradient descent algorithm is better than CONMIN and L-BFGS for the present problem, although the posterior two algorithms perform better on convergence efficiency; 3) inversion results are sensitive to initial guesses; 4) the model is applicable to different wind conditions; 5) the inversion result with thick boundary layer depth (BLD) is slightly better than thin BLD; 6) inversion results are more sensitive to observations in upper layers than those in lower layers; 7) inversion results are still acceptable when data noise exists, indicating the method can sustain noise to a certain degree; 8) a regularization method is proved to be useful to improve the results for present problem; and 9) the present method can tolerate the existence of balance errors due to the imperfection of governing equations. The methodology is further validated in practical experiments where Ekman currents are derived from Bermuda Testbed Mooring data and assimilated. Modeled Ekman currents coincide well with observed ones, especially for upper layers. The results demonstrate that the assumptions of depth dependence and time dependence are equally important for VEVCs. The feasibility of the typical Ekman model, the imperfection of Ekman balance equations, and the deficiencies of the present method are discussed. This method provides a potential way to realize the time variations of VEVCs in ocean models.

Description: The authors thank the seven reviewers for the constructive suggestions which have greatly improved the manuscript. Financial support is provided by the National Key Research and Development Plan of China (Grants 2017YFA0604100 and 2017YFC1404000), the National Natural Science Foundation of China (Grants 41876086 and 41806012), Scientific Research Fund of the Second Institute of Oceanography, MNR (Grant JG1819), and the Fundamental Research Funds for the Central Universities of China. Jicai thanks the support of China Scholarship Council for the visiting research in WHOI, and he also thanks the host of WHOI. BTM data are provided by Ocean Physics Laboratory, University of California, Santa Barbara (http://opl.ucsb.edu).

Description: 2020-03-10

Description: © The Author(s), 2019. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gómez Fernando, Felipe Artigas Luis, J. Gast Rebecca. Molecular phylogeny of the parasitic dinoflagellate Syltodinium listii (Gymnodiniales, Dinophyceae) and generic transfer of Syltodinium undulans comb. nov. (=Gyrodinium undulans). European Journal of Protistology, (2019): 125636, doi:10.1016/j.ejop.2019.125636.

Description: The parasitic dinoflagellate Syltodinium listii was investigated from the open waters of the English Channel and the NW Mediterranean Sea. Syltodinium listii has been unreported since its original description in the North Sea. Cells of S. listii were able to immediately infect copepod eggs of different species, and even nauplii, and after each infection to form up to 32 cells embedded in a mucous envelope. Infection of the same host by more than one dinoflagellate was frequent; although overall, the progeny were reduced in number. Molecular phylogeny based on the small subunit ribosomal RNA (SSU rRNA) gene revealed that S. listii clusters with a group of environmental sequences from the cold North Atlantic region as a sister group of Gymnodinium aureolum. The large subunit ribosomal RNA (LSU rRNA) gene sequences of S. listii from the English Channel and cf. Gyrodinium undulans from the Mediterranean Sea were identical. Thus, we propose Syltodinium undulans comb. nov. for Gyrodinium undulans. The first internal transcribed spacer (ITS) and complete SSU rRNA gene sequences of Dissodinium pseudolunula are provided. The parasitic species of Chytriodinium, Dissodinium and Syltodinium cluster together within the family Chytriodiniaceae, including the free-living species Gymnodinium aureolum, G. corollarium and G. plasticum.

Description: F.G. was supported by the Ministerio Español de Ciencia y Tecnología [contract JCI-2010-08492], and by the convention #2101893310 between CNRS-INSU and the French Ministry for the Ecological and Solidary Transition (MTES) for the implementation of the Monitoring Program of the European Marine Strategy Framework Directive (MSFD), which also supported the ECOPEL-Manche cruises.

Description: 2020-09-17

Description: © The Author(s), 2019. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Clark, S., Hubbard, K. A., Anderson, D. M., McGillicuddy, D. J.,Jr, Ralston, D. K., & Townsend, D. W. Pseudo-nitzschia bloom dynamics in the Gulf of Maine: 2012-2016. Harmful Algae, 88, (2019): 101656, doi:10.1016/j.hal.2019.101656.

Description: The toxic diatom genus Pseudo-nitzschia is a growing presence in the Gulf of Maine (GOM), where regionally unprecedented levels of domoic acid (DA) in 2016 led to the first Amnesic Shellfish Poisoning closures in the region. However, factors driving GOM Pseudo-nitzschia dynamics, DA concentrations, and the 2016 event are unclear. Water samples were collected at the surface and at depth in offshore transects in summer 2012, 2014, and 2015, and fall 2016, and a weekly time series of surface water samples was collected in 2013. Temperature and salinity data were obtained from NERACOOS buoys and measurements during sample collection. Samples were processed for particulate DA (pDA), dissolved nutrients (nitrate, ammonium, silicic acid, and phosphate), and cellular abundance. Species composition was estimated via Automated Ribosomal Intergenic Spacer Analysis (ARISA), a semi-quantitative DNA finger-printing tool. Pseudo-nitzschia biogeography was consistent in the years 2012, 2014, and 2015, with greater Pseudo-nitzschia cell abundance and P. plurisecta dominance in low-salinity inshore samples, and lower Pseudo-nitzschia cell abundance and P. delicatissima and P. seriata dominance in high-salinity offshore samples. During the 2016 event, pDA concentrations were an order of magnitude higher than in previous years, and inshore-offshore contrasts in biogeography were weak, with P. australis present in every sample. Patterns in temporal and spatial variability confirm that pDA increases with the abundance and the cellular DA of Pseudo-nitzschia species, but was not correlated with any one environmental factor. The greater pDA in 2016 was caused by P. australis – the observation of which is unprecedented in the region – and may have been exacerbated by low residual silicic acid. The novel presence of P. australis may be due to local growth conditions, the introduction of a population with an anomalous water mass, or both factors. A definitive cause of the 2016 bloom remains unknown, and continued DA monitoring in the GOM is warranted.

Description: This research was funded by the National Science Foundation (Grant Numbers OCE-1314642 and OCE-1840381), the National Institute of Environmental Health Sciences (Grant Numbers P01 ES021923-01 and P01 ES028938-01), the Woods Hole Center for Oceans and Human Health, the Academic Programs Office of the Woods Hole Oceanographic Institution, the National Oceanic and Atmospheric Administration's Ecology and Oceanography of HABs (ECOHAB) project (contribution number ECO947), and the National Oceanic and Atmospheric Administration’s HAB Event Response Program (Grant numbers NA06NOS4780245 and NA09NOS4780193). We thank Maura Thomas at the University of Maine for support with nutrient collection and analysis. We also thank Kohl Kanwit at the Maine Department of Marine Resources, Anna Farrell, Jane Disney, and Hannah Mogenson at the Mt. Desert Island Biological Laboratory, Steve Archer at Bigelow Laboratory for Ocean sciences, and Bruce Keafer at the Woods Hole Oceanographic Institution for their work collecting samples and data used in the study. We also thank Maya Robert, Christina Chadwick, Laura Markley, Stephanie Keller Abbe, Karen Henschen, Emily Olesin, Steven Bruzek, Sheila O'Dea, April Granholm, Leanne Flewelling, and Elizabeth Racicot at the Florida Fish and Wildlife Conservation Commission-Fish and Wildlife Research Institute for processing samples for DA, DNA-based analyses, and cellular abundance.[CG]

Description: Histone modifications such as methylation of key lysine residues play an important role in embryonic development in a variety of organisms such as of Pacific oysters, zebrafish and mice. The action of demethylase ("erasers") and methyltransferase ("writers") enzymes regulates precisely the methylation status of each lysine residue. However, despite fishes being very useful model organisms in medicine, evolution and ecotoxicology, most studies have focused on mammalian and plant model organisms, and mechanisms underlying regulation of histones are unknown in fish development outside of zebrafish. Here, putative histone lysine demethylases (Kdm) and methyltransferases (Kmt) were identified in an isogenic lineage of the self-fertilizing hermaphroditic vertebrate, the mangrove rivulus fish, Kryptolebias marmoratus. Evolutionary relationships with other animal demethylases and methyltransferases were examined, and expression patterns during embryonic development and in adult tissues were characterized. Twenty-five Kdm orthologues (Jarid2, Jmjd1c, Jmjd4, Jmjd6, Jmjd7, Jmjd8, Kdm1a, Kdm1b, Kdm2a, Kdm2b, Kdm3b, Kdm4a, Kdm4b, Kdm4c, Kdm5a, Kdm5b, Kdm5c, Kdm6a, Kdm6b, Kdm7a, Kdm8, Kdm9, UTY, Phf2 and Phf8) and forty-eight Kmt orthologues (Ezh1, Ezh2, Setd2, Nsd1, Nsd2, Nsd3, Ash1l, Kmt2e, Setd5, Prdm1, Prdm2, Prdm4, Prdm5, Prdm6, Prdm8, Prdm9, Prdm10, Prdm11, Prdm12, Prdm13, Prdm14, Prdm15, Prdm16, Setd3, Setd4, Setd6, Setd1a, Setd1b, Kmt2a, Kmt2b, Kmt2c, Kmt2d, Kmt5a, Kmt5b, Ehmt1, Ehmt2, Suv39h1, Setmar, Setdb1, Setdb2, Smyd1, Smyd2, Smyd3, Smyd4, Smyd5, Setd7, Setd9, Dot1l) were discovered. Expression patterns of both Kdm and Kmt were variable during embryonic development with a peak in gastrula stage and a reduction in later embryogenesis. Expression of both Kdm and Kmt was higher in male brains compared to hermaphrodite brains whereas specific expression patterns of Kdm and Kmt were observed in the hermaphrodite ovotestes and male testes, respectively. Putative histone demethylases (Kdm) and methyltransferases (Kmt) were for the first time characterized in a teleost besides zebrafish, the mangrove rivulus. Their domain conservation and expression profiles suggest that they might play important roles during development, gametogenesis and neurogenesis, which raises questions about epigenetic regulation of these processes by histone lysine methylation in K. marmoratus. Due to its peculiar mode of reproduction and the natural occurrence of isogenic lineages, this new model species is of great interest for understanding epigenetic contributions to the regulation of development and reproduction.

Description: During gametogenesis and embryonic development, precise regulation of gene expression, across cell/tissue types and over time, is crucial. In vertebrates, transcription is partly regulated by histone lysine acetylation/ deacetylation, an epigenetic mechanism mediated by lysine acetyltransferases (KAT) and histone deacetylases (HDAC). Well characterized in mammals, these enzymes are unknown in fish embryology outside of zebrafish development. Here, we characterized putative KAT and HDAC enzymes in the self-fertilizing mangrove rivulus fish, Kryptolebias marmoratus, a species that naturally self-fertilizes and can produce isogenic lineages. This unique feature provides an opportunity to elucidate the role of epigenetic mechanisms as a source of phenotypic plasticity. In this study, twenty-seven KAT and seventeen HDAC genes have been identified. Their conserved domains and their phylogenetic analysis suggest conservation of the enzymes' activity in our species, relative to other vertebrates in which the enzymes have been characterized. Furthermore, the dynamics of KAT and HDAC mRNA expression during embryogenesis, in adult gonads and brains, argues for a putative biological function in early and late development as well as in male/hermaphrodite gametogenesis and adult neurogenesis. Our study aimed to provide a basis about the epigenetic actors putatively regulating histone acetylation in a self-fertilizing fish, the mangrove rivulus. Unique among vertebrates, the great number of isogenic lineages occurring naturally in this species allows exploring the contribution of the enzymes regulating histone acetylation only to reproduction and development in teleost fishes, which are very powerful models in fundamental and applied researches that include aquaculture, ecotoxicology, behaviour, evolution, sexual determinism and human diseases.

Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(5) (2019): 1551-1571. doi:10.1175/JCLI-D-18-0444.1.

Description: Previous studies have documented a poleward shift in the subsiding branches of Earth’s Hadley circulation since 1979 but have disagreed on the causes of these observed changes and the ability of global climate models to capture them. This synthesis paper reexamines a number of contradictory claims in the past literature and finds that the tropical expansion indicated by modern reanalyses is within the bounds of models’ historical simulations for the period 1979–2005. Earlier conclusions that models were underestimating the observed trends relied on defining the Hadley circulation using the mass streamfunction from older reanalyses. The recent observed tropical expansion has similar magnitudes in the annual mean in the Northern Hemisphere (NH) and Southern Hemisphere (SH), but models suggest that the factors driving the expansion differ between the hemispheres. In the SH, increasing greenhouse gases (GHGs) and stratospheric ozone depletion contributed to tropical expansion over the late twentieth century, and if GHGs continue increasing, the SH tropical edge is projected to shift further poleward over the twenty-first century, even as stratospheric ozone concentrations recover. In the NH, the contribution of GHGs to tropical expansion is much smaller and will remain difficult to detect in a background of large natural variability, even by the end of the twenty-first century. To explain similar recent tropical expansion rates in the two hemispheres, natural variability must be taken into account. Recent coupled atmosphere–ocean variability, including the Pacific decadal oscillation, has contributed to tropical expansion. However, in models forced with observed sea surface temperatures, tropical expansion rates still vary widely because of internal atmospheric variability.

Description: We thank Ori Adam, Nick Davis, Isaac Held, Tim Merlis, Lorenzo Polvani, and one anonymous reviewer for helpful comments and suggestions. We thank U.S. CLIVAR and the International Space Science Institute (ISSI) for funding working groups that stimulated this project. We thank all members of the working groups for helpful discussions, and the U.S. CLIVAR and ISSI offices and their sponsoring agencies (NASA,NOAA,NSF,DOE, ESA, Swiss Confederation, Swiss Academy of Sciences, and University of Bern) for supporting these groups and activities.We acknowledge WCRP’sWorking Group on CoupledModelling, which is responsible for CMIP, and we thank the climate modeling groups (Table 2) for producing and making available their model output. For CMIP, the U.S. DOE PCMDI provides coordinating support and led development of software infrastructure in partnership with the Global Organization for Earth System Science Portals.

Description: 2019-08-06

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Baltar, F., Bayer, B., Bednarsek, N., Deppeler, S., Escribano, R., Gonzalez, C. E., Hansman, R. L., Mishra, R. K., Moran, M. A., Repeta, D. J., Robinson, C., Sintes, E., Tamburini, C., Valentin, L. E., & Herndl, G. J. Towards integrating evolution, metabolism, and climate change studies of marine ecosystems. Trends in Ecology and Evolution. 34(11), (2019): 1022-1033, doi: 10.1016/j.tree.2019.07.003.

Description: Global environmental changes are challenging the structure and functioning of ecosystems. However, a mechanistic understanding of how global environmental changes will affect ecosystems is still lacking. The complex and interacting biological and physical processes spanning vast temporal and spatial scales that constitute an ecosystem make this a formidable problem. A unifying framework based on ecological theory, that considers fundamental and realized niches, combined with metabolic, evolutionary, and climate change studies, is needed to provide the mechanistic understanding required to evaluate and forecast the future of marine communities, ecosystems, and their services.

Description: This work arose from the international workshop IMBIZO 5: Marine biosphere research for a sustainable ocean: Linking ecosystems, future states and resource management, organized by the IMBeR (Integrated Marine Biosphere Research) Program, and held at the Woods Hole Oceanographic Institution in October 2017. In particular, this work was generated from the working group from Workshop 2: Metabolic diversity and evolution in marine biogeochemical cycling and ocean ecosystem processes. The constructive criticism of three reviewers on a previous version of the manuscript is gratefully acknowledged. F.B. was supported by a Rutherford Discovery Fellowship by the Royal Society of New Zealand. G.J.H. was supported by the Austrian Science Fund (FWF) project ARTEMIS (P28781-B21).

Description: The Beagle Channel is a remote subantarctic environment where mussel aquaculture initiatives have existed since the early 1990s. Here we analyze phytoplankton biomass and composition, and the occurrence of harmful microalgae species and their toxins at three sites during the period 2015–2016. The occurrence of potentially harmful algae was observed throughout the study period, including toxigenic dinoflagellates such as Alexandrium catenella (Group I of the A. tamarense complex), A. ostenfeldii, Dinophysis acuminata, Gonyaulax spinifera, Azadinium sp., and the diatoms Pseudo-nitzschia australis and P. fraudulenta. Toxic dinoflagellates were detected in low densities whereas a Pseudo-nitzschia bloom was observed in late February. Isolates of A. catenella and P. delicatissima sensu stricto were phylogenetically characterized. The toxin profile of A. catenella was dominated by GTX4, while P. delicatissima sensu stricto showed no production of the neurotoxin domoic acid in culture conditions. The results provide base-line information for the management of harmful algal blooms in this little explored subantarctic area.

Description: We describe the historical evolution of the conceptualization, formulation, quantification, application, and utilization of “radiative forcing” (RF) of Earth’s climate. Basic theories of shortwave and longwave radiation were developed through the nineteenth and twentieth centuries and established the analytical framework for defining and quantifying the perturbations to Earth’s radiative energy balance by natural and anthropogenic influences. The insight that Earth’s climate could be radiatively forced by changes in carbon dioxide, first introduced in the nineteenth century, gained empirical support with sustained observations of the atmospheric concentrations of the gas beginning in 1957. Advances in laboratory and field measurements, theory, instrumentation, computational technology, data, and analysis of well-mixed greenhouse gases and the global climate system through the twentieth century enabled the development and formalism of RF; this allowed RF to be related to changes in global-mean surface temperature with the aid of increasingly sophisticated models. This in turn led to RF becoming firmly established as a principal concept in climate science by 1990. The linkage with surface temperature has proven to be the most important application of the RF concept, enabling a simple metric to evaluate the relative climate impacts of different agents. The late 1970s and 1980s saw accelerated developments in quantification, including the first assessment of the effect of the forcing due to the doubling of carbon dioxide on climate (the “Charney” report). The concept was subsequently extended to a wide variety of agents beyond well-mixed greenhouse gases (WMGHGs; carbon dioxide, methane, nitrous oxide, and halocarbons) to short-lived species such as ozone. The WMO and IPCC international assessments began the important sequence of periodic evaluations and quantifications of the forcings by natural (solar irradiance changes and stratospheric aerosols resulting from volcanic eruptions) and a growing set of anthropogenic agents (WMGHGs, ozone, aerosols, land surface changes, contrails). From the 1990s to the present, knowledge and scientific confidence in the radiative agents acting on the climate system have proliferated. The conceptual basis of RF has also evolved as both our understanding of the way radiative forcing drives climate change and the diversity of the forcing mechanisms have grown. This has led to the current situation where “effective radiative forcing” (ERF) is regarded as the preferred practical definition of radiative forcing in order to better capture the link between forcing and global-mean surface temperature change. The use of ERF, however, comes with its own attendant issues, including challenges in its diagnosis from climate models, its applications to small forcings, and blurring of the distinction between rapid climate adjustments (fast responses) and climate feedbacks; this will necessitate further elaboration of its utility in the future. Global climate model simulations of radiative perturbations by various agents have established how the forcings affect other climate variables besides temperature (e.g., precipitation). The forcing–response linkage as simulated by models, including the diversity in the spatial distribution of forcings by the different agents, has provided a practical demonstration of the effectiveness of agents in perturbing the radiative energy balance and causing climate changes. The significant advances over the past half century have established, with very high confidence, that the global-mean ERF due to human activity since preindustrial times is positive (the 2013 IPCC assessment gives a best estimate of 2.3 W m−2, with a range from 1.1 to 3.3 W m−2; 90% confidence interval). Further, except in the immediate aftermath of climatically significant volcanic eruptions, the net anthropogenic forcing dominates over natural radiative forcing mechanisms. Nevertheless, the substantial remaining uncertainty in the net anthropogenic ERF leads to large uncertainties in estimates of climate sensitivity from observations and in predicting future climate impacts. The uncertainty in the ERF arises principally from the incorporation of the rapid climate adjustments in the formulation, the well-recognized difficulties in characterizing the preindustrial state of the atmosphere, and the incomplete knowledge of the interactions of aerosols with clouds. This uncertainty impairs the quantitative evaluation of climate adaptation and mitigation pathways in the future. A grand challenge in Earth system science lies in continuing to sustain the relatively simple essence of the radiative forcing concept in a form similar to that originally devised, and at the same time improving the quantification of the forcing. This, in turn, demands an accurate, yet increasingly complex and comprehensive, accounting of the relevant processes in the climate system.

Description: Today’s global Earth system models began as simple regional models of tropospheric weather systems. Over the past century, the physical realism of the models has steadily increased, while the scope of the models has broadened to include the global troposphere and stratosphere, the ocean, the vegetated land surface, and terrestrial ice sheets. This chapter gives an approximately chronological account of the many and profound conceptual and technological advances that made today’s models possible. For brevity, we omit any discussion of the roles of chemistry and biogeochemistry, and terrestrial ice sheets.

Description: This chapter reviews the history of the discovery of cloud nuclei and their impacts on cloud microphysics and the climate system. Pioneers including John Aitken, Sir John Mason, Hilding Köhler, Christian Junge, Sean Twomey, and Kenneth Whitby laid the foundations of the field. Through their contributions and those of many others, rapid progress has been made in the last 100 years in understanding the sources, evolution, and composition of the atmospheric aerosol, the interactions of particles with atmospheric water vapor, and cloud microphysical processes. Major breakthroughs in measurement capabilities and in theoretical understanding have elucidated the characteristics of cloud condensation nuclei and ice nucleating particles and the role these play in shaping cloud microphysical properties and the formation of precipitation. Despite these advances, not all their impacts on cloud formation and evolution have been resolved. The resulting radiative forcing on the climate system due to aerosol–cloud interactions remains an unacceptably large uncertainty in future climate projections. Process-level understanding of aerosol–cloud interactions remains insufficient to support technological mitigation strategies such as intentional weather modification or geoengineering to accelerating Earth-system-wide changes in temperature and weather patterns.

Description: Over the past 100 years, the collaborative effort of the international science community, including government weather services and the media, along with the associated proliferation of environmental observations, improved scientific understanding, and growth of technology, has radically transformed weather forecasting into an effective global and regional environmental prediction capability. This chapter traces the evolution of forecasting, starting in 1919 [when the American Meteorological Society (AMS) was founded], over four eras separated by breakpoints at 1939, 1956, and 1985. The current state of forecasting could not have been achieved without essential collaboration within and among countries in pursuing the common weather and Earth-system prediction challenge. AMS itself has had a strong role in enabling this international collaboration.

Description: The year 1919 was important in meteorology, not only because it was the year that the American Meteorological Society was founded, but also for two other reasons. One of the foundational papers in extratropical cyclone structure by Jakob Bjerknes was published in 1919, leading to what is now known as the Norwegian cyclone model. Also that year, a series of meetings was held that led to the formation of organizations that promoted the international collaboration and scientific exchange required for extratropical cyclone research, which by necessity involves spatial scales spanning national borders. This chapter describes the history of scientific inquiry into the structure, evolution, and dynamics of extratropical cyclones, their constituent fronts, and their attendant jet streams and storm tracks. We refer to these phenomena collectively as the centerpiece of meteorology because of their central role in fostering meteorological research during this century. This extremely productive period in extratropical cyclone research has been possible because of 1) the need to address practical challenges of poor forecasts that had large socioeconomic consequences, 2) the intermingling of theory, observations, and diagnosis (including dynamical modeling) to provide improved physical understanding and conceptual models, and 3) strong international cooperation. Conceptual frameworks for cyclones arise from a desire to classify and understand cyclones; they include the Norwegian cyclone model and its sister the Shapiro–Keyser cyclone model. The challenge of understanding the dynamics of cyclones led to such theoretical frameworks as quasigeostrophy, baroclinic instability, semigeostrophy, and frontogenesis. The challenge of predicting explosive extratropical cyclones in particular led to new theoretical developments such as potential-vorticity thinking and downstream development. Deeper appreciation of the limits of predictability has resulted from an evolution from determinism to chaos. Last, observational insights led to detailed cyclone and frontal structure, storm tracks, and rainbands.

Description: Mountains significantly influence weather and climate on Earth, including disturbed surface winds; altered distribution of precipitation; gravity waves reaching the upper atmosphere; and modified global patterns of storms, fronts, jet streams, and climate. All of these impacts arise because Earth’s mountains penetrate deeply into the atmosphere. This penetration can be quantified by comparing mountain heights to several atmospheric reference heights such as density scale height, water vapor scale height, airflow blocking height, and the height of natural atmospheric layers. The geometry of Earth’s terrain can be analyzed quantitatively using statistical, matrix, and spectral methods. In this review, we summarize how our understanding of orographic effects has progressed over 100 years using the equations for atmospheric dynamics and thermodynamics, numerical modeling, and many clever in situ and remote sensing methods. We explore how mountains disturb the surface winds on our planet, including mountaintop winds, severe downslope winds, barrier jets, gap jets, wakes, thermally generated winds, and cold pools. We consider the variety of physical mechanisms by which mountains modify precipitation patterns in different climate zones. We discuss the vertical propagation of mountain waves through the troposphere into the stratosphere, mesosphere, and thermosphere. Finally, we look at how mountains distort the global-scale westerly winds that circle the poles and how varying ice sheets and mountain uplift and erosion over geologic time may have contributed to climate change.

Description: The stratosphere contains ~17% of Earth’s atmospheric mass, but its existence was unknown until 1902. In the following decades our knowledge grew gradually as more observations of the stratosphere were made. In 1913 the ozone layer, which protects life from harmful ultraviolet radiation, was discovered. From ozone and water vapor observations, a first basic idea of a stratospheric general circulation was put forward. Since the 1950s our knowledge of the stratosphere and mesosphere has expanded rapidly, and the importance of this region in the climate system has become clear. With more observations, several new stratospheric phenomena have been discovered: the quasi-biennial oscillation, sudden stratospheric warmings, the Southern Hemisphere ozone hole, and surface weather impacts of stratospheric variability. None of these phenomena were anticipated by theory. Advances in theory have more often than not been prompted by unexplained phenomena seen in new stratospheric observations. From the 1960s onward, the importance of dynamical processes and the coupled stratosphere–troposphere circulation was realized. Since approximately 2000, better representations of the stratosphere—and even the mesosphere—have been included in climate and weather forecasting models. We now know that in order to produce accurate seasonal weather forecasts, and to predict long-term changes in climate and the future evolution of the ozone layer, models with a well-resolved stratosphere with realistic dynamics and chemistry are necessary.