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  • Other Sources  (1,024)
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  • 1
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    Wiley
    In:  Chichester, Wiley, vol. 231, no. 3, pp. 2-203, (ISBN 0-470-02298-1)
    Publication Date: 1982
    Keywords: Data analysis / ~ processing ; Correlation ; Seismic stratigraphy ; Seismics (controlled source seismology)
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  • 2
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    Wiley
    In:  New York, 2nd Edition, 709 pp., Wiley, vol. 75, no. 2, pp. 2-203, (ISBN: 3-7643-7143-9)
    Publication Date: 1981
    Keywords: Correlation ; Data analysis / ~ processing ; fit ; Textbook of mathematics
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  • 3
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    Wiley
    In:  Chichester, 2nd ed., xvii + 517 pp., Wiley, vol. 5, no. 22, pp. 662-664, (ISBN 0-470-87000-1 (HB), ISBN 0-470-87001-X (PB))
    Publication Date: 2005
    Keywords: GIS ; Textbook of informatics ; Textbook of geography ; geography ; management ; policy
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  • 4
    Publication Date: 2016-12-13
    Description: Experimental studies linking community composition to functioning are typically confined to small and closed micro- or mesocosms. Such restricted conditions may affect both species’ biology and their environment. Yet, targeting simple features in the behaviour of species may circumvent these constraints. Focusing on ecological functions provided by dung beetles, we test whether large, open-top cages – MESOCLOSURES – will intercept the flight trajectories of beetles, thereby allowing manipulation of local community composition. MESOCLOSURES were built in both tropical forest (Brazil) and temperate grasslands (Finland), thus testing their general efficiency. Within the respective environments, we varied different aspects of MESOCLOSURE design: in the tropical forest, we examined the impact of MESOCLOSURE dimensions on exclusion efficiency, whereas in the temperate grassland, we assessed the potential for selectively excluding and including community members by different mesh sizes. In the temperate environment, we also went from method to application, using MESOCLOSURES to relate community composition to functioning under two simulated grazing regimes. MESOCLOSURES allowed efficient manipulation of dung beetle communities, maintaining dung beetle densities at intended levels in both temperate and tropical systems. In the tropics, the smallest cages (1 × 1 m) offered the highest contrast in beetle densities inside vs. outside of the fence, whereas the largest cages (9 × 9 m) offered the lowest. Nonetheless, densities inside cages never exceed one-fifth of those outside. At the temperate site, manipulations of community structure through mesh size yielded significant differences in functioning and suggested an interaction between small dung-dwelling species and large tunnelling species. Within cages, higher grazing was reflected in augmented dung removal. We conclude that MESOCLOSURES can be effectively used to study dung beetle functions across habitats and latitudes. As applied insights, the present study adds resolution to the significance of different functional groups of dung beetles and shows that grazing pressure may have an important impact on the ecosystem functions that they provide. Overall, this study suggests that targeted manipulation of dispersal may offer new solutions for linking fauna to ecosystem functions with minimal impact on the processes measured.
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  • 5
    Publication Date: 2019-09-23
    Description: The Denmark Strait Overflow (DSO) contributes roughly half to the total volume transport of the Nordic overflows. The overflow increases its volume by entraining ambient water as it descends into the subpolar North Atlantic, feeding into the deep branch of the Atlantic Meridional Overturning Circulation. In June 2012, a multiplatform experiment was carried out in the DSO plume on the continental slope off Greenland (180 km downstream of the sill in Denmark Strait), to observe the variability associated with the entrainment of ambient waters into the DSO plume. In this study, we report on two high-dissipation events captured by an autonomous underwater vehicle (AUV) by horizontal profiling in the interfacial layer between the DSO plume and the ambient water. Strong dissipation of turbulent kinetic energy of O( math formula) W kg−1 was associated with enhanced small-scale temperature variance at wavelengths between 0.05 and 500 m as deduced from a fast-response thermistor. Isotherm displacement slope spectra reveal a wave number-dependence characteristic of turbulence in the inertial-convective subrange ( math formula) at wavelengths between 0.14 and 100 m. The first event captured by the AUV was transient, and occurred near the edge of a bottom-intensified energetic eddy. Our observations imply that both horizontal advection of warm water and vertical mixing of it into the plume are eddy-driven and go hand in hand in entraining ambient water into the DSO plume. The second event was found to be a stationary feature on the upstream side of a topographic elevation located in the plume pathway. Flow-topography interaction is suggested to drive the intense mixing at this site.
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  • 6
    Publication Date: 2019-02-01
    Description: Oxygen minimum zones (OMZs) are often characterized by nitrogen-to-phosphorus (N:P) ratios far lower than the canonical Redfield ratio. Whereas, the importance of variable stoichiometry in phytoplankton has long been recognized, variations in zooplankton stoichiometry have received much less attention. Here we combine observations from two shipboard mesocosm nutrient enrichment experiments with an optimality-based plankton ecosystem model, designed to elucidate the roles of different trophic levels and elemental stoichiometry. Pre-calibrated microzooplankton parameter sets represent foraging strategies of dinoflagellates and ciliates in our model. Our results suggest that remineralization is largely driven by omnivorous ciliates and dinoflagellates, and highlight the importance of intraguild predation. We hypothesize that microzooplankton respond to changes in food quality in terms of nitrogen-to-carbon (N:C) ratios, rather than nitrogen-to-phosphorus (N:P) ratios, by allowing variations in their phosphorus-to-carbon (P:C) ratio. Our results point toward an important biogeochemical role of flexible microzooplankton stoichiometry
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  • 7
    Publication Date: 2020-10-26
    Description: Male secondary sexual traits are targets of inter- and/or intrasexual selection, but can vary due to a correlation with life-history traits or as by-product of adaptation to distinct environments. Trade-offs contributing to this variation may comprise conspicuousness towards conspecifics versus inconspicuousness towards predators, or between allocating resources into coloration versus the immune system. Here, we examine variation in expression of a carotenoid-based visual signal, anal-fin egg-spots, along a replicate environmental gradient in the haplochromine cichlid fish Astatotilapia burtoni. We quantified egg-spot number, area, and coloration; applied visual models to estimate the trait's conspicuousness when perceived against the surrounding tissue under natural conditions; and used the lymphocyte ratio as a measure for immune activity. We find that (i) males possess larger and more conspicuous egg-spots than females, which is likely explained by their function in sexual selection; (ii) riverine fish generally feature fewer but larger and/or more intensively colored egg-spots, which is probably to maintain signal efficiency in intraspecific interactions in long-wavelength shifted riverine light conditions; and (iii) egg-spot number and relative area correlate with immune defense, suggesting a trade-off in the allocation of carotenoids. Taken together, haplochromine egg-spots feature the potential to adapt to the respective underwater light environment, and are traded-off with investment into the immune system
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  • 8
    Publication Date: 2020-02-06
    Description: The ocean's potential to export carbon to depth partly depends on the fraction of primary production (PP) sinking out of the euphotic zone (i.e., the e-ratio). Measurements of PP and export flux are often performed simultaneously in the field, although there is a temporal delay between those parameters. Thus, resulting e-ratio estimates often incorrectly assume an instantaneous downward export of PP to export flux. Evaluating results from four mesocosm studies, we find that peaks in organic matter sedimentation lag chlorophyll a peaks by 2 to 15 days. We discuss the implications of these time lags (TLs) for current e-ratio estimates and evaluate potential controls of TL. Our analysis reveals a strong correlation between TL and the duration of chlorophyll a buildup, indicating a dependency of TL on plankton food web dynamics. This study is one step further toward time-corrected e-ratio estimates
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 9
    Publication Date: 2020-02-06
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  • 10
    Publication Date: 2020-06-23
    Description: A multiproxy study of palaeoceanographic and climatic changes in northernmost Baffin Bay shows that major environmental changes have occurred since the deglaciation of the area at about 12 500 cal. yr BP. The interpretation is based on sedimentology, benthic and planktonic foraminifera and their isotopic composition, as well as diatom assemblages in the sedimentary records at two core sites, one located in the deeper central part of northernmost Baffin Bay and one in a separate trough closer to the Greenland coast. A revised chronology for the two records is established on the basis of 15 previously published AMS 14C age determinations. A basal diamicton is overlain by laminated, fossil-free sediments. Our data from the early part of the fossiliferous record (12 300–11 300 cal. yr BP), which is also initially laminated, indicate extensive seasonal sea-ice cover and brine release. There is indication of a cooling event between 11 300 and 10 900 cal. yr BP, and maximum Atlantic Water influence occurred between 10 900 and 8200 cal. yr BP (no sediment recovery between 8200 and 7300 cal. yr BP). A gradual, but fluctuating, increase in sea-ice cover is seen after 7300 cal. yr BP. Sea-ice diatoms were particularly abundant in the central part of northernmost Baffin Bay, presumably due to the inflow of Polar waters from the Arctic Ocean, and less sea ice occurred at the near-coastal site, which was under continuous influence of the West Greenland Current. Our data from the deep, central part show a fluctuating degree of upwelling after c. 7300 cal. yr BP, culminating between 4000 and 3050 cal. yr BP. There was a gradual increase in the influence of cold bottom waters from the Arctic Ocean after about 3050 cal. yr BP, when agglutinated foraminifera became abundant. A superimposed short-term change in the sea-surface proxies is correlated with the Little Ice Age cooling.
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  • 11
    Publication Date: 2020-02-06
    Description: The sediment-water interface is an important site for material exchange in marine systems and harbor unique microbial habitats. The flux of nutrients, metals, and greenhouse gases at this interface may be severely dampened by the activity of microorganisms and abiotic redox processes, leading to the “benthic filter” concept. In this study, we investigate the spatial variability, mechanisms and quantitative importance of a microbially-dominated benthic filter for dissolved sulfide in the Eastern Gotland Basin (Baltic Sea) that is located along a dynamic redox gradient between 65 and 173 m water depth. In August-September 2013, high resolution (0.25 mm minimum) vertical microprofiles of redox-sensitive species were measured in surface sediments with solid-state gold-amalgam voltammetric microelectrodes. The highest sulfide consumption (2.73–3.38 mmol m−2 day−1) occurred within the top 5 mm in sediments beneath a pelagic hypoxic transition zone (HTZ, 80–120 m water depth) covered by conspicuous white bacterial mats of genus Beggiatoa. A distinct voltammetric signal for polysulfides, a transient sulfur oxidation intermediate, was consistently observed within the mats. In sediments under anoxic waters (〉140 m depth), signals for Fe(II) and aqueous FeS appeared below a subsurface maximum in dissolved sulfide, indicating a Fe(II) flux originating from older sediments presumably deposited during the freshwater Ancylus Lake that preceded the modern Baltic Sea. Our results point to a dynamic benthic sulfur cycling in Gotland Basin where benthic sulfide accumulation is moderated by microbial sulfide oxidation at the sediment surface and FeS precipitation in deeper sediment layers. Upscaling our fluxes to the Baltic Proper; we find that up to 70% of the sulfide flux (2281 kton yr−1) toward the sediment-seawater interface in the entire basin can be consumed at the microbial mats under the HTZ (80–120 m water depth) while only about 30% the sulfide flux effuses to the bottom waters (〉120 m depth). This newly described benthic filter for the Gotland Basin must play a major role in limiting the accumulation of sulfide in and around the deep basins of the Baltic Sea.
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  • 12
    Publication Date: 2021-04-23
    Description: Stable isotope compositions can potentially be used to trace atmospheric Cd inputs to the surface ocean and anthropogenic Cd emissions to the atmosphere. Both of these applications may provide valuable insights into the effects of anthropogenic activities on the cycling of Cd in the environment. However, a lack of constraints for the Cd isotope compositions of atmospheric aerosols is currently hindering such studies. Here, we present stable Cd isotope data for aerosols collected over the Tropical Atlantic Ocean. The samples feature variable proportions of mineral dust-derived and anthropogenic Cd, yet exhibit similar isotope compositions, thus negating the distinction of these Cd sources using isotopic signatures in this region. Isotopic variability between these two atmospheric Cd sources may be identified in other areas, and thus warrants further investigation. Regardless, these data provide important initial constraints on the isotope composition of atmospheric Cd inputs to the ocean.
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  • 13
    Publication Date: 2020-02-06
    Description: Aim: The lives of juvenile leatherback turtles are amongst the most enigmatic of all marine mega-vertebrates. For these cryptic organisms, ocean models provide important insights into their dispersion from natal sites. Here, corroborated by fisheries bycatch data, we simulate spatio-temporal variation in hatchling dispersion patterns over five decades from the World's largest leatherback turtle nesting region. Location: Equatorial Central West Africa (3.5°N to −6°S) spanning the Gulf of Guinea in the North, Gabon and the Republic/Democratic Republic of the Congo in the South. Results: Due to dynamic oceanic conditions at these equatorial latitudes, dispersion scenarios differed significantly: (1) along the north to south gradient of the study region, (2) seasonally and (3) between years. From rookeries to the north of the equator, simulated hatchling retention rates within the Gulf of Guinea were very high (〉99%) after 6 months of drift, whilst south of the equator, retention rates were as low as c. 6% with the majority of simulated hatchlings dispersing west into the South Atlantic Ocean with the South Equatorial Current. Seasonal dispersion variability was driven by wind changes arising from the yearly north/southward migration of the intertropical convergence zone resulting in the increasing westerly dispersion of hatchlings throughout the hatching season. Annual variability in wind stress drove a long-term trend for decreased retention within the Gulf of Guinea and increased westerly dispersion into habitats in the South Atlantic Ocean. Main conclusions: Shifts in dispersion habitats arising from spatio-temporal oceanic variability expose hatchlings to different environments and threats that will influence important life history attributes such as juvenile growth/survival rates; anticipated to impact the population dynamics and size/age structure of populations into adulthood. The impacts of local and dynamic oceanic conditions thus require careful considerations, such as subregional management, when managing marine populations of conservation concern.
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  • 14
    Publication Date: 2020-02-06
    Description: The waning stage(s) of the Tethyan ocean(s) in the Balkans are not well understood. Controversy centres on the origin and life-span of the Cretaceous Sava Zone, which is allegedly a remnant of the last oceanic domain in the Balkan Peninsula, defining the youngest suture between Eurasia- and Adria-derived plates. In order to investigate to what extent late-Cretaceous volcanism within the Sava zone is consistent with this model, we present new age data together with trace-element and Sr–Nd–Pb isotope data for the Klepa basaltic lavas from the central Balkan Peninsula. Our new geochemical data show marked differences between the Cretaceous Klepa basalts (Sava Zone) and the rocks of other volcanic sequences from the Jurassic ophiolites of the Balkans. The Klepa basalts mostly have Sr–Nd–Pb isotopic and trace-element signatures that resemble enriched within-plate basalts, substantially different from Jurassic ophiolite basalts with MORB, BAB and IAV affinities. Trace-element modelling of the Klepa rocks indicates 2–20% polybaric melting of a relatively homogeneously metasomatised mantle source that ranges in composition from garnet lherzolite to ilmenite+apatite bearing spinel–amphibole lherzolite. Thus, the residual mineralogy is characteristic of a continental rather than oceanic lithospheric mantle source, suggesting an intracontinental within-plate origin for the Klepa basalts. Two alternative geodynamic models are internally consistent with our new findings: i) if the Sava Zone represents remnants of the youngest Neotethyan Ocean, magmatism along this zone would be situated within the forearc region and triggered by ridge subduction; ii) if the Sava Zone delimits a diffuse tectonic boundary between Adria and Europe, which had already collided in the Late Jurassic, the Klepa basalts together with a number of other magmatic centres represent volcanism related to transtensional tectonics.
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  • 15
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 122 (4). 2830-2846 .
    Publication Date: 2020-02-06
    Description: The upstream sources and pathways of the Denmark Strait Overflow Water and their variability have been investigated using a high-resolution model hindcast. This global simulation covers the period from 1948 to 2009 and uses a fine model mesh (1/20°) to resolve mesoscale features and the complex current structure north of Iceland explicitly. The three sources of the Denmark Strait Overflow, the shelfbreak East Greenland Current (EGC), the separated EGC, and the North Icelandic Jet, have been analyzed using Eulerian and Lagrangian diagnostics. The shelfbreak EGC contributes the largest fraction in terms of volume and freshwater transport to the Denmark Strait Overflow and is the main driver of the overflow variability. The North Icelandic Jet contributes the densest water to the Denmark Strait Overflow and shows only small temporal transport variations. During summer, the net volume and freshwater transports to the south are reduced. On interannual time scales, these transports are highly correlated with the large-scale wind stress curl around Iceland and, to some extent, influenced by the North Atlantic Oscillation, with enhanced southward transports during positive phases. The Lagrangian trajectories support the existence of a hypothesized overturning loop along the shelfbreak north of Iceland, where water carried by the North Icelandic Irminger Current is transformed and feeds the North Icelandic Jet. Monitoring these two currents and the region north of the Iceland shelfbreak could provide the potential to track long-term changes in the Denmark Strait Overflow and thus also the AMOC.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 16
    Publication Date: 2017-05-02
    Description: The diet composition of Emperor Penguin Aptenodytes forsteri chicks was examined at Auster and Taylor Glacier colonies, near Australia's Mawson station, Antarctica, between hatching in mid-winter and fledging in mid-summer by “water-offloading” adults. Chicks at both colonies were fed a similar suite of prey species. Crustaceans occurred in 82% of stomach samples at Auster and 87% of stomachs at Taylor Glacier and were heavily digested: their contribution to food mass could not be quantified. Fish, primarily bentho-pelagic species, accounted for 52% by number and 55% by mass of chick diet at Auster, and squid formed the remainder. At Taylor Glacier the corresponding values were 27% by number and 31% by mass of fish and 73% by number and 69% by mass of squid. Of the 33 species or taxa identified, the fish Trematomus eulepidotus and the squid Psychroteuthis glacialis and Allu-roteuthis antarcticus accounted for 64% and 74% of the diets by mass at Auster and Taylor Glacier, respectively. The sizes of fish varied temporally but not in a linear manner from winter to summer. Adult penguins captured fish ranging in length from 60 mm (Pfeura-gramma antarcticum) to 250 mm (T. eulepidotus) and squid (P. glacialis) from 19 to 280 mm in mantle length. The length-frequency distribution of P. glacialis showed seasonal variation, with the size of squid increasing from winter to summer. The energy density of chick diet mix increased significantly prior to “fledging”.
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  • 17
    Publication Date: 2020-02-06
    Description: Nitrous oxide (N2O) is a powerful greenhouse gas principally produced by nitrification and denitrification in the marine environment. Observations were made in the eastern South Pacific (ESP), between 10° and 60°S, and ~75°–88°W, from intermediate waters targeting Antarctic Intermediate Water (AAIW) at potential density of 27.0–27.1 kg m−3. Between 60° and 20°S, a gradual equatorward increase of N2O from 8 to 26 nmol L−1 was observed at density 27.0–27.1 kg m−3 where AAIW penetrates. Positive correlations were found between apparent N2O production (ΔN2O) and O2 utilization (AOU), and between ΔN2O and NO−3, which suggested that local N2O production is predominantly produced by nitrification. Closer to the equator, between 20° and 10°S at AAIW core, a strong N2O increase up to 75 nmol L−1 was observed. Because negative correlations were found between ΔN2O vs. NO−3 and ΔN2O vs. N* (a Nitrogen deficit index) and because ΔN2O and AOU do not follow a linear trend, we suspect that, in addition to nitrification, denitrification also takes place in N2O cycling. By making use of water mass mixing analyses, we show that an increase in N2O occurs in the region where high oxygen from AAIW merges with low oxygen from Equatorial Subsurface Water (ESSW), creating favorable conditions for local N2O production. We conclude that the non-linearity in the relationship between N2O and O2 is a result of mixing between two water masses with very different source characteristics, paired with the different time frames of nitrification and denitrification processes that impact water masses en route before they finally meet and mix in the ESP region.
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  • 18
    Publication Date: 2020-02-06
    Description: The microbial community response to petroleum seepage was investigated in a whole round sediment core (16 cm length) collected nearby natural hydrocarbon seepage structures in the Caspian Sea, using a newly developed Sediment-Oil-Flow-Through (SOFT) system. Distinct redox zones established and migrated vertically in the core during the 190 days-long simulated petroleum seepage. Methanogenic petroleum degradation was indicated by an increase in methane concentration from 8 μM in an untreated core compared to 2300 μM in the lower sulfate-free zone of the SOFT core at the end of the experiment, accompanied by a respective decrease in the δ13C signal of methane from -33.7 to -49.5‰. The involvement of methanogens in petroleum degradation was further confirmed by methane production in enrichment cultures from SOFT sediment after the addition of hexadecane, methylnapthalene, toluene, and ethylbenzene. Petroleum degradation coupled to sulfate reduction was indicated by the increase of integrated sulfate reduction rates from 2.8 SO42-m-2 day-1 in untreated cores to 5.7 mmol SO42-m-2 day-1 in the SOFT core at the end of the experiment, accompanied by a respective accumulation of sulfide from 30 to 447 μM. Volatile hydrocarbons (C2–C6 n-alkanes) passed through the methanogenic zone mostly unchanged and were depleted within the sulfate-reducing zone. The amount of heavier n-alkanes (C10–C38) decreased step-wise toward the top of the sediment core and a preferential degradation of shorter (〈C14) and longer chain n-alkanes (〉C30) was seen during the seepage. This study illustrates, to the best of our knowledge, for the first time the development of methanogenic petroleum degradation and the succession of benthic microbial processes during petroleum passage in a whole round sediment core.
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  • 19
    Publication Date: 2020-02-06
    Description: The North Atlantic Current (NAC) is subject to variability on multiannual to decadal time scales, influencing the transport of volume, heat, and freshwater from the subtropical to the eastern subpolar North Atlantic (NA). Current observational time series are either too short or too episodic to study the processes involved. Here we compare the observed continuous NAC transport time series at the western flank of the Mid-Atlantic Ridge (MAR) and repeat hydrographic measurements at the OVIDE line in the eastern Atlantic with the NAC transport and circulation in the high-resolution (1/20°) ocean model configuration VIKING20 (1960–2008). The modeled baroclinic NAC transport relative to 3400 m (24.5 ± 7.1 Sv) at the MAR is only slightly lower than the observed baroclinic mean of 27.4 ± 4.7 Sv from 1993 to 2008, and extends further north by about 0.5°. In the eastern Atlantic, the western NAC (WNAC) carries the bulk of the transport in the model, while transport estimates based on hydrographic measurements from five repeated sections point to a preference for the eastern NAC (ENAC). The model is able to simulate the main features of the subpolar NA, providing confidence to use the model output to analyze the influence of the North Atlantic Oscillation (NAO). Model based velocity composites reveal an enhanced NAC transport across the MAR of up to 6.7 Sv during positive NAO phases. Most of that signal (5.4 Sv) is added to the ENAC transport, while the transport of the WNAC was independent of the NAO.
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  • 20
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    AGU (American Geophysical Union) | Wiley
    In:  Geophysical Research Letters, 44 (9). pp. 4246-4255.
    Publication Date: 2020-02-06
    Description: While the Earth's surface has considerably warmed over the past two decades, the tropical Pacific has featured a cooling of sea surface temperatures in its eastern and central parts, which went along with an unprecedented strengthening of the equatorial trade winds, the surface component of the Pacific Walker Circulation (PWC). Previous studies show that this decadal trend in the trade winds is generally beyond the range of decadal trends simulated by climate models when forced by historical radiative forcing. There is still a debate on the origin of and the potential role that internal variability may have played in the recent decadal surface wind trend. Using a number of long control (unforced) integrations of global climate models and several observational data sets, we address the question as to whether the recent decadal to multidecadal trends are robustly classified as an unusual event or the persistent response to external forcing. The observed trends in the tropical Pacific surface climate are still within the range of the long-term internal variability spanned by the models but represent an extreme realization of this variability. Thus, the recent observed decadal trends in the tropical Pacific, though highly unusual, could be of natural origin. We note that the long-term trends in the selected PWC indices exhibit a large observational uncertainty, even hindering definitive statements about the sign of the trends.
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  • 21
    Publication Date: 2020-07-16
    Description: Microbial mats collected at cold methane seeps in the Black Sea carry out anaerobic oxidation of methane (AOM) to carbon dioxide using sulfate as the electron acceptor. These mats, which predominantly consist of sulfate-reducing bacteria and archaea of the ANME-1 and ANME-2 type, contain large amounts of proteins very similar to methyl-coenzyme M reductase from methanogenic archaea. Mass spectrometry of mat samples revealed the presence of two nickel-containing cofactors in comparable amounts, one with the same mass as coenzyme F430 from methanogens (m/z = 905) and one with a mass that is 46 Da higher (m/z = 951). The two cofactors were isolated and purified, and their constitution and absolute configuration were determined. The cofactor with m/z = 905 was proven to be identical to coenzyme F430 from methanogens. For the m/z = 951 species, high resolution ICP-MS pointed to F430 + CH2S as the molecular formula, and LA-ICP-SF MS finally confirmed the presence of one sulfur atom per nickel. Esterification gave two stereoisomeric pentamethyl esters with m/z = 1021, which could be purified by reverse phase HPLC and were subjected to comprehensive NMR analysis, allowing determination of their constitution and configuration as (172S)−172-methylthio-F430 pentamethyl ester and (172R)−172-methylthio-F430 pentamethyl ester. The corresponding diastereoisomeric pentaacids could also be separated by HPLC and were correlated to the esters via mild hydrolysis of the latter. Equilibration of the pentaacids under acid catalysis showed that the (172S) isomer is the naturally occurring albeit thermodynamically less stable one. The more stable (172R) isomer (80% at equilibrium) is an isolation artifact generated under the acidic conditions necessary for the isolation of the cofactors from the calcium carbonate-encrusted mats.
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  • 22
    Publication Date: 2020-02-06
    Description: Biodiversity and conservation data are generally costly to collect, particularly in the marine realm. Hence, data collected for a given—often scientific—purpose are occasionally contributed toward secondary needs, such as policy implementation or other types of decision-making. However, while the quality and accessibility of marine biodiversity and conservation data have improved over the past decade, the ways in which these data can be used to develop and implement relevant management and conservation measures and actions are not always explicit. For this reason, there are a number of scientifically-sound datasets that are not used systematically to inform policy and decisions. Transforming these marine biodiversity and conservation datasets into knowledge products that convey the information required by policy- and decision-makers is an important step in strengthening knowledge exchange across the science-policy interface. Here, we identify seven characteristics of a selection of online biodiversity and conservation knowledge products that contribute to their ability to support policy- and decision-making in the marine realm (as measured by e.g., mentions in policy resolutions/decisions, or use for reporting under selected policy instruments; use in high-level screening for areas of biodiversity importance). These characteristics include: a clear policy mandate; established networks of collaborators; iterative co-design of a user-friendly interface; standardized, comprehensive and documented methods with quality assurance; consistent capacity and succession planning; accessible data and value-added products that are fit-for-purpose; and metrics of use collated and reported. The outcomes of this review are intended to: (a) support data creators/owners/providers in designing and curating biodiversity and conservation knowledge products that have greater influence, and hence impact, in policy- and decision-making, and (b) provide recommendations for how decision- and policy-makers can support the development, implementation, and sustainability of robust biodiversity and conservation knowledge products through the framing of marine policy and decision-making frameworks.
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  • 23
    Publication Date: 2017-06-07
    Description: The Denmark Strait Overflow (DSO) today compensates for the northward flowing Norwegian and Irminger branches of the North Atlantic Current that drive the Nordic heat pump. During the Last Glacial Maximum (LGM), ice sheets constricted the Denmark Strait aperture in addition to ice eustatic/isostatic effects which reduced its depth (today ∼630 m) by ∼130 m. These factors, combined with a reduced north-south density gradient of the water-masses, are expected to have restricted or even reversed the LGM DSO intensity. To better constrain these boundary conditions, we present a first reconstruction of the glacial DSO, using four new and four published epibenthic and planktic stable-isotope records from sites to the north and south of the Denmark Strait. The spatial and temporal distribution of epibenthic δ18O and δ13C maxima reveals a north-south density gradient at intermediate water depths from σ0∼28.7 to 28.4/28.1 and suggests that dense and highly ventilated water was convected in the Nordic Seas during the LGM. However, extremely high epibenthic δ13C values on top of the Mid-Atlantic Ridge document a further convection cell of Glacial North Atlantic Intermediate Water to the south of Iceland, which, however, was marked by much lower density (σ0∼28.1) The north-south gradient of water density possibly implied that the glacial DSO was directed to the south like today and fed Glacial North Atlantic Deep Water that has underthrusted the Glacial North Atlantic Intermediate Water in the Irminger Basin.
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  • 24
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 122 (4). pp. 3481-3499.
    Publication Date: 2020-02-06
    Description: We examine the mean pathways, transit timescales, and transformation of waters flowing from the Pacific and the marginal seas through the Indian Ocean (IO) on their way toward the South Atlantic within a high-resolution ocean/sea-ice model. The model fields are analyzed from a Lagrangian perspective where water volumes are tracked as they enter the IO. The IO contributes 12.6 Sv to Agulhas leakage, which within the model is 14.1 ± 2.2 Sv, the rest originates from the South Atlantic. The Indonesian Through-flow constitutes about half of the IO contribution, is surface bound, cools and salinificates as it leaves the basin within 10–30 years. Waters entering the IO south of Australia are at intermediate depths and maintain their temperature-salinity properties as they exit the basin within 15–35 years. Of these waters, the contribution from Tasman leakage is 1.4 Sv. The rest stem from recirculation from the frontal regions of the Southern Ocean. The marginal seas export 1.0 Sv into the Atlantic within 15–40 years, and the waters cool and freshen on-route. However, the model's simulation of waters from the Gulfs of Aden and Oman are too light and hence overly influenced by upper ocean circulations. In the Cape Basin, Agulhas leakage is well mixed. On-route, temperature-salinity transformations occur predominantly in the Arabian Sea and within the greater Agulhas Current region. Overall, the IO exports at least 7.9 Sv from the Pacific to the Atlantic, thereby quantifying the strength of the upper cell of the global conveyor belt.
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  • 25
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    Wiley
    In:  Journal of Microscopy, 131 (2). pp. 173-186.
    Publication Date: 2017-07-13
    Description: Many of the difficulties of staining plastic embedded tissues for light and electron microscopy derive from physical exclusion of hydrophilic staining reagents by hydrophobic embedding media. Structures which stain most intensely with hydrophilic reagents usually contain less hydrophobic plastic than do non-staining structures. Such incomplete infiltration is apparently caused by exclusion of viscous, hydrophobic monomers by physically dense and/or well hydrated tissue elements. In keeping with this, generalized staining of tissues embedded in hydrophobic media does occur when hydrophobic reagents are used. Staining of plastic-free structures with single hydrophilic reagents or with sequences of such reagents, is, however, largely rate-controlled. The surprising similarity of hydrophilic and hydrophobic plastic embedding media is discussed. Limits of this simple model are explored, with a consideration of the roles of fixative and of monomer-tissue reactions
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  • 26
    Publication Date: 2017-06-15
    Description: At the largest time and space scales, the pace of erosion and chemical weathering is determined by tectonic uplift rates. Deviations from equilibrium arise from the transient response of landscape denudation to climatic and tectonic perturbations. We posit that the constraint of mass balance, however, makes it unlikely that such disequilibrium persists at the global scale over millions of years, as has been proposed for late Cenozoic erosion. We synthesize weathering fluxes, global sedimentation rates, sediment yields and tectonic motions to show a remarkable constancy in the pace of Earth-surface evolution over the last 10 Ma and support the null hypothesis – that global rates of landscape change have remained constant over this time period, despite global climate change and mountain building events. This work undermines the hypothesis that increased weathering due to mountain building or climate change was the primary agent for a decrease in global temperatures.
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  • 27
    Publication Date: 2020-02-06
    Description: One of the major challenges in ecological stoichiometry is to establish how environmental changes in resource availability may affect both the biochemical composition of organisms and the species composition of communities. This is a pressing issue in many coastal waters, where anthropogenic activities have caused large changes in riverine nutrient inputs. Here we investigate variation in the biochemical composition and synthesis of amino acids, fatty acids (FA), and carbohydrates in mixed phytoplankton communities sampled from the North Sea. The communities were cultured in chemostats supplied with different concentrations of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) to establish four different types of resource limitations. Diatoms dominated under N-limited, N+P limited and P-limited conditions. Cyanobacteria became dominant in one of the N-limited chemostats and green algae dominated in the one P-limited chemostat and under light-limited conditions. Changes in nutrient availability directly affected amino acid content, which was lowest under N and N+P limitation, higher under P-limitation and highest when light was the limiting factor. Storage carbohydrate content showed the opposite trend and storage FA content seemed to be co-dependent on community composition. The synthesis of essential amino acids was affected under N and N+P limitation, as the transformation from non-essential to essential amino acids decreased at DIN:DIP ≤ 6. The simple community structure and clearly identifiable nutrient limitations confirm and clarify previous field findings in the North Sea. Our results show that different phytoplankton groups are capable of adapting their key biosynthetic rates and hence their biochemical composition to different degrees when experiencing shifts in nutrient availability. This will have implications for phytoplankton growth, community structure, and the nutritional quality of phytoplankton as food for higher trophic levels.
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  • 28
    Publication Date: 2020-02-06
    Description: The potential of mining seafloor massive sulfide deposits for metals such as Cu, Zn, and Au is currently debated. One key challenge is to predict where the largest deposits worth mining might form, which in turn requires understanding the pattern of subseafloor hydrothermal mass and energy transport. Numerical models of heat and fluid flow are applied to illustrate the important role of fault zone properties (permeability and width) in controlling mass accumulation at hydrothermal vents at slow spreading ridges. We combine modeled mass-flow rates, vent temperatures, and vent field dimensions with the known fluid chemistry at the fault-controlled Logatchev 1 hydrothermal field of the Mid-Atlantic Ridge. We predict that the 135 kilotons of SMS at this site (estimated by other studies) can have accumulated with a minimum depositional efficiency of 5% in the known duration of hydrothermal venting (58,200 year age of the deposit). In general, the most productive faults must provide an efficient fluid pathway while at the same time limit cooling due to mixing with entrained cold seawater. This balance is best met by faults that are just wide and permeable enough to control a hydrothermal plume rising through the oceanic crust. Model runs with increased basal heat input, mimicking a heat flow contribution from along-axis, lead to higher mass fluxes and vent temperatures, capable of significantly higher SMS accumulation rates. Nonsteady state conditions, such as the influence of a cooling magmatic intrusion beneath the fault zone, also can temporarily increase the mass flux while sustaining high vent temperatures.
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  • 29
    Publication Date: 2020-02-06
    Description: The interplay between sediment deposition patterns, organic matter type and the quantity and quality of reactive mineral phases determines the accumulation, speciation, and isotope composition of pore water and solid phase sulfur constituents in marine sediments. Here, we present the sulfur geochemistry of siliciclastic sediments from two sites along the Argentine continental slope—a system characterized by dynamic deposition and reworking, which result in non-steady state conditions. The two investigated sites have different depositional histories but have in common that reactive iron phases are abundant and that organic matter is refractory—conditions that result in low organoclastic sulfate reduction rates (SRR). Deposition of reworked, isotopically light pyrite and sulfurized organic matter appear to be important contributors to the sulfur inventory, with only minor addition of pyrite from organoclastic sulfate reduction above the sulfate-methane transition (SMT). Pore-water sulfide is limited to a narrow zone at the SMT. The core of that zone is dominated by pyrite accumulation. Iron monosulfide and elemental sulfur accumulate above and below this zone. Iron monosulfide precipitation is driven by the reaction of low amounts of hydrogen sulfide with ferrous iron and is in competition with the oxidation of sulfide by iron (oxyhydr)oxides to form elemental sulfur. The intervals marked by precipitation of intermediate sulfur phases at the margin of the zone with free sulfide are bordered by two distinct peaks in total organic sulfur (TOS). Organic matter sulfurization appears to precede pyrite formation in the iron-dominated margins of the sulfide zone, potentially linked to the presence of polysulfides formed by reaction between dissolved sulfide and elemental sulfur. Thus, SMTs can be hotspots for organic matter sulfurization in sulfide-limited, reactive iron-rich marine sedimentary systems. Furthermore, existence of elemental sulfur and iron monosulfide phases meters below the SMT demonstrates that in sulfide-limited systems metastable sulfur constituents are not readily converted to pyrite but can be buried to deeper sediment depths. Our data show that in non-steady state systems, redox zones do not occur in sequence but can reappear or proceed in inverse sequence throughout the sediment column, causing similar mineral alteration processes to occur at the same time at different sediment depths.
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  • 30
    Publication Date: 2020-02-06
    Description: Diazotrophic dinitrogen (N2) fixation contributes ~76% to "new" nitrogen inputs to the sunlit open ocean, but environmental factors determining N2 fixation rates are not well constrained. Excess phosphate (phosphate-nitrate/16 〉 0) and iron availability control N2 fixation rates in the eastern tropical North Atlantic (ETNA), but it remains an open question how excess phosphate is generated within or supplied to the phosphate-depleted sunlit layer. Our observations in the ETNA region (8°N-15°N, 19°W-23°W) suggest that Prochlorococcus and Synechococcus, the two ubiquitous non-diazotrophic cyanobacteria with cellular N:P ratios higher than the Redfield ratio, create an environment of excess phosphate, which cannot be explained by diapycnal mixing, atmospheric, and riverine inputs. Thus, our results unveil a new biogeochemical niche construction mechanism by non-diazotrophic cyanobacteria for their diazotrophic phylum group members (N2 fixers). Our observations may help to understand the prevalence of diazotrophy in low-phosphate, oligotrophic regions.
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  • 31
    Publication Date: 2020-02-06
    Description: Oceanographic observations from the Eurasian Basin north of Svalbard collected between January and June 2015 from the N-ICE2015 drifting expedition are presented. The unique winter observations are a key contribution to existing climatologies of the Arctic Ocean, and show a ∼100 m deep winter mixed layer likely due to high sea ice growth rates in local leads. Current observations for the upper ∼200 m show mostly a barotropic flow, enhanced over the shallow Yermak Plateau. The two branches of inflowing Atlantic Water are partly captured, confirming that the outer Yermak Branch follows the perimeter of the plateau, and the inner Svalbard Branch the coast. Atlantic Water observed to be warmer and shallower than in the climatology, is found directly below the mixed layer down to 800 m depth, and is warmest along the slope, while its properties inside the basin are quite homogeneous. From late May onwards, the drift was continually close to the ice edge and a thinner surface mixed layer and shallower Atlantic Water coincided with significant sea ice melt being observed.
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  • 32
    Publication Date: 2021-04-23
    Description: Our study followed the seasonal cycling of soluble (SFe), colloidal (CFe), dissolved (DFe), total dissolvable (TDFe), labile particulate (LPFe) and total particulate (TPFe) iron in the Celtic Sea (NE Atlantic Ocean). Preferential uptake of SFe occurred during the spring bloom, preceding the removal of CFe. Uptake and export of Fe during the spring bloom, coupled with a reduction in vertical exchange, led to Fe deplete surface waters (〈0.2 nM DFe; 0.11 nM LPFe, 0.45 nM TDFe, 1.84 nM TPFe) during summer stratification. Below the seasonal thermocline, DFe concentrations increased from spring to autumn, mirroring NO3- and consistent with supply from remineralised sinking organic material, and cycled independently of particulate Fe over seasonal timescales. These results demonstrate that summer Fe availability is comparable to the seasonally Fe limited Ross Sea shelf, and therefore is likely low enough to affect phytoplankton growth and species composition.
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  • 33
    Publication Date: 2018-12-17
    Description: Current climate models disagree on how much carbon dioxide land ecosystems take up for photosynthesis. Tracking the stronger carbonyl sulfide signal could help.
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  • 34
    Publication Date: 2020-02-06
    Description: Oceanic dimethyl sulfide (DMS) is of interest due to its critical influence on atmospheric sulfur compounds in the marine atmosphere and its hypothesized significant role in global climate. High-resolution shipboard underway measurements of surface seawater DMS and the partial pressure of carbon dioxide (pCO2) were conducted in the Atlantic Ocean and Indian Ocean sectors of the Southern Ocean (SO), the southeast Indian Ocean, and the northwest Pacific Ocean from February to April 2014 during the 30th Chinese Antarctic Research Expedition. The SO, particularly in the region south of 58°S, had the highest mean surface seawater DMS concentration of 4.1 ± 8.3 nM (ranged from 0.1 to 73.2 nM) and lowest mean seawater pCO2 level of 337 ± 50 μatm (ranged from 221 to 411 μatm) over the entire cruise. Significant variations of surface seawater DMS and pCO2 in the seasonal ice zone (SIZ) of SO were observed, which are mainly controlled by biological process and sea ice activity. We found a significant negative relationship between DMS and pCO2 in the SO SIZ using 0.1° resolution, [DMS] seawater = -0.160 [pCO2] seawater + 61.3 (r2 = 0.594, n = 924, p 〈 0.001). We anticipate that the relationship may possibly be utilized to reconstruct the surface seawater DMS climatology in the SO SIZ. Further studies are necessary to improve the universality of this approach. Key Points: • The characteristics of surface water DMS and pCO2 distributions from the Southern Ocean to northwest Pacific Ocean are investigated • The correlations between DMS, pCO2, and environmental parameters are analyzed • Anticorrelation between DMS and pCO2 is found in the seasonal ice zone of the Southern Ocean
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  • 35
    Publication Date: 2020-02-06
    Description: Natural gas hydrates are considered a potential resource for gas production on industrial scales. Gas hydrates contribute to the strength and stiffness of the hydrate-bearing sediments. During gas production, the geomechanical stability of the sediment is compromised. Due to the potential geotechnical risks and process management issues, the mechanical behavior of the gas hydrate-bearing sediments needs to be carefully considered. In this study, we describe a coupling concept that simplifies the mathematical description of the complex interactions occurring during gas production by isolating the effects of sediment deformation and hydrate phase changes. Central to this coupling concept is the assumption that the soil grains form the load-bearing solid skeleton, while the gas hydrate enhances the mechanical properties of this skeleton. We focus on testing this coupling concept in capturing the overall impact of geomechanics on gas production behavior though numerical simulation of a high-pressure isotropic compression experiment combined with methane hydrate formation and dissociation. We consider a linear-elastic stress-strain relationship because it is uniquely defined and easy to calibrate. Since, in reality, the geomechanical response of the hydrate-bearing sediment is typically inelastic and is characterized by a significant shear-volumetric coupling, we control the experiment very carefully in order to keep the sample deformations small and well within the assumptions of poroelasticity. The closely coordinated experimental and numerical procedures enable us to validate the proposed simplified geomechanics-to-flow coupling, and set an important precursor toward enhancing our coupled hydro-geomechanical hydrate reservoir simulator with more suitable elastoplastic constitutive models.
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  • 36
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    AGU (American Geophysical Union) | Wiley
    In:  Geophysical Research Letters, 44 (21). 11,166-11,173.
    Publication Date: 2020-06-29
    Description: The Summer East Atlantic (SEA) mode is the second dominant mode of summer low-frequency variability in the Euro-Atlantic region. Using reanalysis data, we show that SEA-related circulation anomalies significantly influence temperatures and precipitation over Europe. We present evidence that part of the interannual SEA variability is forced by diabatic heating anomalies of opposing signs in the tropical Pacific and Caribbean that induce an extratropical Rossby wave train. This precipitation dipole is related to SST anomalies characteristic of the developing ENSO phases. Seasonal hindcast experiments forced with observed sea surface temperatures (SST) exhibit skill at capturing the interannual SEA variability corroborating the proposed mechanism and highlighting the possibility for improved prediction of boreal summer variability. Our results indicate that tropical forcing of the SEA likely played a role in the dynamics of the 2015 European heat wave.
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  • 37
    Publication Date: 2017-10-11
    Description: Intercellular adhesion molecule-1 (ICAM-1) is distributed and expressed on cell surface and is present in circulation as soluble form (sICAM-1). Tumor necrosis factor-alpha (TNFα) and radical oxygen species (ROS) up-regulate the expression of ICAM-1. This study demonstrates for the first time in 18 Co cells, a myofibroblast cell line derived from human colonic mucosa, an up-regulation of ICAM-1 expression and sICAM-1 release induced by oxidative stress and TNFα stimulation. The intracellular redox state was modulated by L-buthionine-S,R-sulfoximine (BSO) or N-acetylcysteine (NAC), inhibitor and precursor respectively of GSH synthesis. ROS production increases in cells treated with BSO or TNFα, and this has been related to an up-regulation of ICAM-1 expression and sICAM-1 release. The involvement of metalloproteinases in ICAM-1 release has been demonstrated. Moreover, also expression and activation of A disintegrin and metalloproteinase 17, a membrane-bound enzyme known as TNFα-converting enzyme (TACE), have been related to ROS levels. This suggests the possible involvement of TACE in the cleavage of ICAM-1 on cell surface in condition of oxidative stress. NAC down-regulates the expression and release of ICAM-1 as well as the expression and activation of TACE. However, in TNFα stimulated cells NAC treatment reduces only in part ICAM-1 expression and sICAM-1 release. Given this TNFα may also act on these events by a redox-independent mechanism.
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  • 38
    Publication Date: 2017-10-17
    Description: Polyextremophiles are present in a wide variety of extreme environments in which they must overcome various hostile conditions simultaneously such as high UVB radiation, extreme pHs and temperatures, elevated salt and heavy-metal concentration, low-oxygen pressure and scarce nutrients. High-altitude Andean lakes (HAALs; between 2000 and 4000 m) are one example of these kinds of ecosystems suffering from the highest total solar and UVB radiation on Earth where an abundant and diverse polyextremophilic microbiota was reported. In this work, we performed the first extensive isolation of UV-resistant actinobacteria from soils, water, sediments and modern stromatolites at HAALs. Based on the 16S rRNA sequence, the strains were identified as members of the genera Streptomyces, Micrococcus, Nesterenkonia, Rhodococcus, Microbacterium, Kocuria, Arthrobacter, Micromonospora, Blastococcus, Citrococcus and Brevibacterium. Most isolates displayed resistance to multiple environmental stress factors confirming their polyextremophilic nature and were able to produce effective antimicrobial compounds. HAALs constitute a largely unexplored repository of UV-resistant actinobacteria, with high potential for the biodiscovery of novel natural products.
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  • 39
    Publication Date: 2020-02-06
    Description: Two variants of sea-surface temperature (SST) dipole indices for the South Atlantic Ocean (SAO) has been previously described representing: (1) the South Atlantic subtropical dipole (SASD) supposedly peaking in austral summer and (2) the SAO dipole (SAOD) in winter. In this study, we present the analysis of observational data sets (1985–2014) showing the SASD and SAOD as largely constituting the same mode of ocean–atmosphere interaction reminiscent of the SAOD structure peaking in winter. Indeed, winter is the only season in which the inverse correlation between the northern and southern poles of both indices is statistically significant. The observed SASD and SAOD indices exhibit robust correlations (P ≤ 0.001) in all seasons and these are reproduced by 54 of the 63 different models of the Coupled Models Intercomparison Project analysed. Their robust correlations notwithstanding the SASD and SAOD indices appear to better capture different aspects of SAO climate variability and teleconnections
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  • 40
    Publication Date: 2017-11-20
    Description: Marine methane hydrate in sands has huge potential as an unconventional gas resource; however, no field test of their production potential had been conducted. Here, we report the world’s first offshore methane hydrate production test conducted at the eastern Nankai Trough and show key findings toward future commercial production. Geological analysis indicates that hydrate saturation reaches 80% and permeability in the presence of hydrate ranges from 0.01 to 10 mdarcies. Permeable (1–10 mdarcies) highly hydrate-saturated layers enable depressurization-induced gas production of approximately 20,000 Sm3/D with water of 200 m3/D. Numerical analysis reveals that the dissociation zone expands laterally 25 m at the front after 6 days. Gas rate is expected to increase with time, owing to the expansion of the dissociation zone. It is found that permeable highly hydrate-saturated layers increase the gas–water ratio of the production fluid. The identification of such layers is critically important to increase the energy efficiency and the technical feasibility of depressurization-induced gas production from hydrate reservoirs.
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  • 41
    Publication Date: 2017-10-27
    Description: Throughout at least the past several centuries, El Niño-Southern Oscillation (ENSO) has played a significant role in human response to climate. Over time, increased attention on ENSO has led to a better understanding of both the physical mechanisms, and the environmental and societal consequences of the phenomenon. The prospects for seasonal climate forecasting emerged from ENSO studies, and were first pursued in ENSO studies. In this paper, we review ENSO's impact on society, specifically with regard to agriculture, water, and health; we also explore the extent to which ENSO-related forecasts are used to inform decision making in these sectors. We find that there are significant differences in the uptake of forecasts across sectors, with the highest use in agriculture, intermediate use in water resources management, and the lowest in health. Forecast use is low in areas where ENSO linkages to climate are weak, but the strength of this linkage alone does not guarantee use. Moreover, the differential use of ENSO forecasts by sector shows the critical role of institutions that work at the boundary between science and society. In a long-term iterative process requiring continual maintenance, these organizations serve to enhance the salience, credibility, and legitimacy of forecasts and related climate services. WIREs Clim Change 2015, 6:17–34. doi: 10.1002/wcc.294.
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  • 42
    Publication Date: 2020-02-06
    Description: Contents 670 I. 671 II. 671 III. 676 IV. 678 678 References 678 SUMMARY: Biotic interactions underlie life's diversity and are the lynchpin to understanding its complexity and resilience within an ecological niche. Algal biologists have embraced this paradigm, and studies building on the explosive growth in omics and cell biology methods have facilitated the in-depth analysis of nonmodel organisms and communities from a variety of ecosystems. In turn, these advances have enabled a major revision of our understanding of the origin and evolution of photosynthesis in eukaryotes, bacterial-algal interactions, control of massive algal blooms in the ocean, and the maintenance and degradation of coral reefs. Here, we review some of the most exciting developments in the field of algal biotic interactions and identify challenges for scientists in the coming years. We foresee the development of an algal knowledgebase that integrates ecosystem-wide omics data and the development of molecular tools/resources to perform functional analyses of individuals in isolation and in populations. These assets will allow us to move beyond mechanistic studies of a single species towards understanding the interactions amongst algae and other organisms in both the laboratory and the field.
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  • 43
    Publication Date: 2021-02-08
    Description: Coccolithophores belong to the most abundant calcium carbonate mineralizing organisms. Coccolithophore biomineralization is a complex and highly regulated process, resulting in a product that strongly differs in its intricate morphology from the abiogenically produced mineral equivalent. Moreover, unlike extracellularly formed biological carbonate hard tissues, coccolith calcite is neither a hybrid composite, nor is it distinguished by a hierarchical microstructure. This is remarkable as the key to optimizing crystalline biomaterials for mechanical strength and toughness lies in the composite nature of the biological hard tissue and the utilization of specific microstructures. To obtain insight into the pathway of biomineralization of Emiliania huxleyi coccoliths, we examine intracrystalline nanostructural features of the coccolith calcite in combination with cell ultrastructural observations related to the formation of the calcite in the coccolith vesicle within the cell. With TEM diffraction and annular dark-field imaging, we prove the presence of planar imperfections in the calcite crystals such as planar mosaic block boundaries. As only minor misorientations occur, we attribute them to dislocation networks creating small-angle boundaries. Intracrystalline occluded biopolymers are not observed. Hence, in E. huxleyi calcite mosaicity is not caused by occluded biopolymers, as it is the case in extracellularly formed hard tissues of marine invertebrates, but by planar defects and dislocations which are typical for crystals formed by classical ion-by-ion growth mechanisms. Using cryo-preparation techniques for SEM and TEM, we found that the membrane of the coccolith vesicle and the outer membrane of the nuclear envelope are in tight proximity, with a well-controlled constant gap of ~4 nm between them. We describe this conspicuous connection as a not yet described interorganelle junction, the “nuclear envelope junction”. The narrow gap of this junction likely facilitates transport of Ca2+ ions from the nuclear envelope to the coccolith vesicle. On the basis of our observations, we propose that formation of the coccolith utilizes the nuclear envelope–endoplasmic reticulum Ca2+-store of the cell for the transport of Ca2+ ions from the external medium to the coccolith vesicle and that E. huxleyi calcite forms by ion-by-ion growth rather than by a nanoparticle accretion mechanism.
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  • 44
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    AGU (American Geophysical Union) | Wiley
    In:  Geophysical Research Letters, 42 (4). pp. 1046-1052.
    Publication Date: 2017-11-22
    Description: The analysis of high-resolution vector magnetic data acquired by deep-sea submersibles (DSSs) requires the development of specific approaches adapted to their uneven tracks. We present a method that takes advantage of (1) the varying altitude of the DSS above the seafloor and (2) high-resolution multibeam bathymetric data acquired separately, at higher altitude, by an Autonomous Underwater Vehicle, to estimate the absolute magnetization intensity and the magnetic polarity of the shallow subseafloor along the DSS path. We apply this method to data collected by DSS Nautile on a small active basalt-hosted hydrothermal site. The site is associated with a lack of magnetization, in agreement with previous findings at the same kind of sites: the contrast between nonmagnetic sulfide deposits/stockwork zone and strongly magnetized basalt is sufficient to explain the magnetic signal observed at such a low altitude. Both normal and reversed polarities are observed in the lava flows surrounding the site, suggesting complex history of accumulating volcanic flows.
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  • 45
    Publication Date: 2017-12-14
    Description: Current limitations in technology have prevented an extensive analysis of the connections among neurons, particularly within nonmammalian organisms. We developed a transsynaptic viral tracer originally for use in mice, and then tested its utility in a broader range of organisms. By engineering the vesicular stomatitis virus (VSV) to encode a fluorophore and either the rabies virus glycoprotein (RABV-G) or its own glycoprotein (VSV-G), we created viruses that can transsynaptically label neuronal circuits in either the retrograde or anterograde direction, respectively. The vectors were investigated for their utility as polysynaptic tracers of chicken and zebrafish visual pathways. They showed patterns of connectivity consistent with previously characterized visual system connections, and revealed several potentially novel connections. Further, these vectors were shown to infect neurons in several other vertebrates, including Old and New World monkeys, seahorses, axolotls, and Xenopus. They were also shown to infect two invertebrates, Drosophila melanogaster, and the box jellyfish, Tripedalia cystophora, a species previously intractable for gene transfer, although no clear evidence of transsynaptic spread was observed in these species. These vectors provide a starting point for transsynaptic tracing in most vertebrates, and are also excellent candidates for gene transfer in organisms that have been refractory to other methods.
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  • 46
    Publication Date: 2020-05-11
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  • 47
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    AGU (American Geophysical Union) | Wiley
    In:  Earth's Future, 6 (3). pp. 565-582.
    Publication Date: 2021-02-08
    Description: To maintain the chance of keeping the average global temperature increase below 2 degrees C and to limit long-term climate change, removing carbon dioxide from the atmosphere (carbon dioxide removal, CDR) is becoming increasingly necessary. We analyze optimal and cost-effective climate policies in the dynamic integrated assessment model (IAM) of climate and the economy (DICE2016R) and investigate (1) the utilization of (ocean) CDR under different climate objectives, (2) the sensitivity of policies with respect to carbon cycle feedbacks, and (3) how well carbon cycle feedbacks are captured in the carbon cycle models used in state-of-the-art IAMs. Overall, the carbon cycle model in DICE2016R shows clear improvements compared to its predecessor, DICE2013R, capturing much better long-term dynamics and also oceanic carbon outgassing due to excess oceanic storage of carbon from CDR. However, this comes at the cost of a (too) tight short-term remaining emission budget, limiting the model suitability to analyze low-emission scenarios accurately. With DICE2016R, the compliance with the 2 degrees C goal is no longer feasible without negative emissions via CDR. Overall, the optimal amount of CDR has to take into account (1) the emission substitution effect and (2) compensation for carbon cycle feedbacks.
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  • 48
    Publication Date: 2020-02-06
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  • 49
    Publication Date: 2021-02-08
    Description: Invasive ecosystem engineers (IEE) are potentially one of the most influential types of biological invaders. They are expected to have extensive ecological impacts by altering the physical–chemical structure of ecosystems, thereby changing the rules of existence for a broad range of resident biota. To test the generality of this expectation, we used a global systematic review and meta-analysis to examine IEE effects on the abundance of individual species and communities, biodiversity (using several indices) and ecosystem functions, focusing on marine and estuarine environments. We found that IEE had a significant effect (positive and negative) in most studies testing impacts on individual species, but the overall (cumulative) effect size was small and negative. Many individual studies showed strong IEE effects on community abundance and diversity, but the direction of effects was variable, leading to statistically non-significant overall effects in most categories. In contrast, there was a strong overall effect on most ecosystem functions we examined. IEE negatively affected metabolic functions and primary production, but positively affected nutrient flux, sedimentation and decomposition. We use the results to develop a conceptual model by highlighting pathways whereby IEE impact communities and ecosystem functions, and identify several sources of research bias in the IEE-related invasion literature. Only a few of the studies simultaneously quantified IEE effects on community/diversity and ecosystem functions. Therefore, understanding how IEE may alter biodiversity–ecosystem function relationships should be a primary focus of future studies of invasion biology. Moreover, the clear effects of IEE on ecosystem functions detected in our study suggest that scientists and environmental managers ought to examine how the effects of IEE might be manifested in the services that marine ecosystems provide to humans.
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  • 50
    Publication Date: 2021-04-23
    Description: The ocean is a major sink for anthropogenic carbon dioxide (CO2), with the CO2 uptake causing changes to ocean chemistry. To monitor these changes and provide a chemical background for biological and biogeochemical studies, high quality partial pressure of CO2 (pCO2) sensors are required, with suitable accuracy and precision for ocean measurements. Optodes have the potential to measure in situ pCO2 without the need for wet chemicals or bulky gas equilibration chambers that are typically used in pCO2 systems. However, optodes are still in an early developmental stage compared to more established equilibrator-based pCO2 systems. In this study, we performed a laboratory-based characterization of a time-domain dual lifetime referencing pCO2 optode system. The pCO2 optode spot was illuminated with low intensity light (0.2 mA, 0.72 mW) to minimize spot photobleaching. The spot was calibrated using an experimental gas calibration rig prior to deployment, with a determined response time (τ63) of 50 s at 25°C. The pCO2 optode was deployed as an autonomous shipboard underway system across the high latitude North Atlantic Ocean with a resolution of ca.10 measurements per hour. The optode data was validated with a secondary shipboard equilibrator-based infrared pCO2 instrument, and pCO2 calculated from discrete samples of dissolved inorganic carbon and total alkalinity. Further verification of the pCO2 optode data was achieved using complimentary variables such as nutrients and dissolved oxygen. The shipboard precision of the pCO2 sensor was 9.5 μatm determined both from repeat measurements of certified reference materials and from the standard deviation of seawater measurements while on station. Finally, the optode deployment data was used to evaluate the physical and biogeochemical controls on pCO2.
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  • 51
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 122 (12). pp. 9795-9813.
    Publication Date: 2020-02-06
    Description: The region encompassing the Kuroshio Extension (KE) in the Northwestern Pacific Ocean (25°N–45°N and 130°E–180°E) is one of the most eddy-energetic regions of the global ocean. The three-dimensional structures and transports of mesoscale eddies in this region are comprehensively investigated by combined use of satellite data and Argo profiles. With the allocation of Argo profiles inside detected eddies, the spatial variations of structures of eddy temperature and salinity anomalies are analyzed. The results show that eddies predominantly have subsurface (near-surface) intensified temperature and salinity anomalies south (north) of the KE jet, which is related to different background stratifications between these regions. A new method based on eddy trajectories and the inferred three-dimensional eddy structures is proposed to estimate heat and salt transports by eddy movements in a Lagrangian framework. Spatial distributions of eddy transports are presented over the vicinity of the KE for the first time. The magnitude of eddy-induced meridional heat (freshwater volume) transport is on the order of 0.01 PW (103 m3/s). The eddy heat transport divergence results in an oceanic heat loss south and heat gain north of the KE, thereby reinforcing and counteracting the oceanic heat loss from air-sea fluxes south and north of the KE jet, respectively. It also suggests a poleward heat transport across the KE jet due to eddy propagation.
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  • 52
    Publication Date: 2021-03-19
    Description: During the summer monsoon, the western tropical Indian Ocean is predicted to be a hot spot for dimethylsulfide emissions, the major marine sulfur source to the atmosphere, and an important aerosol precursor. Other aerosol relevant fluxes, such as isoprene and sea spray, should also be enhanced, due to the steady strong winds during the monsoon. Marine air masses dominate the area during the summer monsoon, excluding the influence of continentally derived pollutants. During the SO234-2/235 cruise in the western tropical Indian Ocean from July to August 2014, directly measured eddy covariance DMS fluxes confirm that the area is a large source of sulfur to the atmosphere (cruise average 9.1 μmol m−2 d−1). The directly measured fluxes, as well as computed isoprene and sea spray fluxes, were combined with FLEXPART backward and forward trajectories to track the emissions in space and time. The fluxes show a significant positive correlation with aerosol data from the Terra and Suomi-NPP satellites, indicating a local influence of marine emissions on atmospheric aerosol numbers.
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  • 53
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    Wiley
    In:  Current Protocols in Human Genetics, 53 (Suppl. 3D). A.3D.1-A.3D.21.
    Publication Date: 2018-01-16
    Description: Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques, as well as three microvolume methods that use fiber optic technology in specialized cells or instrumentation. These procedures allow quantitation of DNA solutions ranging from 1 pg/µl to 50 mg/ml.
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  • 54
    Publication Date: 2020-07-20
    Description: The guest-exchange method (or replacement) for methane production from gas hydrates has recently received attention because it can be used for both carbon dioxide sequestration and methane production. The structure of gas hydrates is maintained as a structure I (sI) hydrate while methane molecules are exchanged with carbon dioxide. In this study, CH4 + CO2 mixed gas hydrates were examined under terahertz light at various temperatures to simulate CH4–CO2 exchange reactions. Each gas hydrate composition examined was a representative composition at each step of the exchange reaction. The molecular composition was also accurately analyzed by gas chromatography. Refractive indices calculated by the terahertz time-domain spectroscopy (THz-TDS) of gas hydrate samples were correlated to the guest composition, and this novel method was proven to be used to quantify the extent of replacement via optical constant. Furthermore, changes in the water framework from the sI hydrate to ice using THz-TDS were investigated with an increasing temperature. Overall, this study reveals the process of guest exchange and phase transition from a gas hydrate to ice via the optical properties in the terahertz region, and it offers a powerful tool in gas hydrate production.
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  • 55
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    Annual Reviews
    In:  Annual Review of Marine Science, 9 (1). pp. 413-444.
    Publication Date: 2020-06-11
    Description: Marine zooplankton comprise a phylogenetically and functionally diverse assemblage of protistan and metazoan consumers that occupy multiple trophic levels in pelagic food webs. Within this complex network, carbon flows via alternative zooplankton pathways drive temporal and spatial variability in production-grazing coupling, nutrient cycling, export, and transfer efficiency to higher trophic levels. We explore current knowledge of the processing of zooplankton food ingestion by absorption, egestion, respiration, excretion, and growth (production) processes. On a global scale, carbon fluxes are reasonably constrained by the grazing impact of microzooplankton and the respiratory requirements of mesozooplankton but are sensitive to uncertainties in trophic structure. The relative importance, combined magnitude, and efficiency of export mechanisms (mucous feeding webs, fecal pellets, molts, carcasses, and vertical migrations) likewise reflect regional variability in community structure. Climate change is expected to broadly alter carbon cycling by zooplankton and to have direct impacts on key species.
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  • 56
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    Annual Reviews
    In:  Annual Review of Marine Science, 10 (1). pp. 443-473.
    Publication Date: 2020-06-09
    Description: Mixing efficiency is the ratio of the net change in potential energy to the energy expended in producing the mixing. Parameterizations of efficiency and of related mixing coefficients are needed to estimate diapycnal diffusivity from measurements of the turbulent dissipation rate. Comparing diffusivities from microstructure profiling with those inferred from the thickening rate of four simultaneous tracer releases has verified, within observational accuracy, 0.2 as the mixing coefficient over a 30-fold range of diapycnal diffusivities. Although some mixing coefficients can be estimated from pycnocline measurements, at present mixing efficiency must be obtained from channel flows, laboratory experiments, and numerical simulations. Reviewing the different approaches demonstrates that estimates and parameterizations for mixing efficiency and coefficients are not converging beyond the at-sea comparisons with tracer releases, leading to recommendations for a community approach to address this important issue.
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  • 57
    Publication Date: 2021-02-08
    Description: Air masses in the convective outflows of four large convective systems near Borneo Island in Malaysia were sampled in the height range 11–13 km within the frame of the SHIVA (Stratospheric Ozone: Halogen Impacts in a Varying Atmosphere) FP7 European project in November and December 2011. Correlated enhancements of CO, CH4 and the short-lived halogen species (CH3I and CHBr3) were detected when the aircraft crossed the anvils of the four systems. These enhancements were interpreted as the fingerprint of vertical transport from the boundary layer by the convective updraft and then horizontal advection in the outflow. For the four observations, the fraction f of air from the boundary layer ranged between 15 and 67%, showing the variability in transport efficiency depending on the dynamics of the convective system.
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  • 58
    Publication Date: 2018-12-17
    Description: The discovery of known bioactive chemical leads from microbial monocultures hinders the efficiency of drug discovery programmes. Therefore, in recent years, the use of fungal–bacterial coculture experiments has gained considerable attention due to their ability to generate new bioactive leads. In this work, fungal strain Setophoma terrestris was cocultured with Bacillus amyloliquifaciens to discover novel bioactive compounds.
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  • 59
    Publication Date: 2021-02-08
    Description: The 1Myr tephra records of IODP (International Ocean Discovery Program) Holes U1436A and U1437B in the Izu-Bonin fore- and reararc were investigated in order to assess provenance and eruptive volumes, respectively. In total, 304 tephra samples were examined and 260 primary tephra layers were identified. Tephra provenance was determined by means of major and trace element compositions of glass shards and distinguished between Japan and Izu-Bonin arc origin of the tephra layers. A total of 33 marine tephra compositions were correlated to the Japan arc and 227 to the Izu arc. Twenty marine tephra layers were correlated between the two drilling sites. Additionally, we defined eleven correlations of marine tephra deposits to major widespread Japanese eruptions; from the 1.05Ma Shishimuta-Pink Tephra to the 30ka Aira-Tn Tephra, both from Kyushu Island. These eruptions provide independent time markers within the sediment record and six correlations were used to date tephra layers from Japan in Hole U1436A to establish an alternative age model for this hole. Furthermore, the minimum distal tephra volumes of all detected events were calculated, which enabled the comparison of the tephra volumes that derived from the Japan and the Izu-Bonin arcs. For some of the major Japanese eruptions these are the first volume estimations that also include distal deposits. All of the Japanese tephras derived from events with eruption magnitude Mv≥5.6 and three of the investigated eruptions reach magnitudes Mv≥7. Volcanic events of the Izu-Bonin arc have mostly eruption magnitudes Mv≤5.
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  • 60
    Publication Date: 2021-02-08
    Description: The potential harvest of polymetallic nodules will heavily impact the abyssal, soft sediment ecosystem by removing sediment, hard substrate, and associated fauna inside mined areas. It is therefore important to know whether the ecosystem can recover from this disturbance and if so at which rate. The first objective of this study was to measure recovery of phytodetritus processing by the benthic food web from a sediment disturbance experiment in 1989. The second objective was to determine the role of holothurians in the uptake of fresh phytodetritus by the benthic food web. To meet both objectives, large benthic incubation chambers (CUBEs; 50 × 50 × 50 cm) were deployed inside plow tracks (with and without holothurian presence) and at a reference site (holothurian presence, only) at 4100 m water depth. Shortly after deployment, 13C- and 15N-labeled phytodetritus was injected in the incubation chambers and during the subsequent 3-day incubation period, water samples were taken five times to measure the production of 13C-dissolved inorganic carbon over time. At the end of the incubation, holothurians and sediment samples were taken to determine biomass, densities and incorporation of 13C and 15N into bacteria, nematodes, macrofauna, and holothurians. For the first objective, the results showed that biomass of bacteria, nematodes and macrofauna did not differ between reference sites and plow track sites when holothurians were present. Additionally, meiofauna and macrofauna taxonomic composition was not significantly different between the sites. In contrast, total 13C uptake by bacteria, nematodes and holothurians was significantly lower at plow track sites compared to reference sites, though the number of replicates was low. This result suggests that important ecosystem functions such as organic matter processing have not fully recovered from the disturbance that occurred 26 years prior to our study. For the second objective, the analysis indicated that holothurians incorporated 2.16 × 10−3 mmol labile phytodetritus C m−2 d−1 into their biomass, which is one order of magnitude less as compared to bacteria, but 1.3 times higher than macrofauna and one order of magnitude higher than nematodes. Additionally, holothurians incorporated more phytodetritus carbon per unit biomass than macrofauna and meiofauna, suggesting a size-dependence in phytodetritus carbon uptake.
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  • 61
    Publication Date: 2021-05-19
    Description: Recently, measurements of oxygen concentration in the ocean-one of the most classical parameters in chemical oceanography-are experiencing a revival. This is not surprising, given the key role of oxygen for assessing the status of the marine carbon cycle and feeling the pulse of the biological pump. The revival, however, has to a large extent been driven by the availability of robust optical oxygen sensors and their painstakingly thorough characterization. For autonomous observations, oxygen optodes are the sensors of choice: They are used abundantly on Biogeochemical-Argo floats, gliders and other autonomous oceanographic observation platforms. Still, data quality and accuracy are often suboptimal, in some part because sensor and data treatment are not always straightforward and/or sensor characteristics are not adequately taken into account. Here, we want to summarize the current knowledge about oxygen optodes, their working principle as well as their behavior with respect to oxygen, temperature, hydrostatic pressure, and response time. The focus will lie on the most widely used and accepted optodes made by Aanderaa and Sea-Bird. We revisit the essentials and caveats of in-situ in air calibration as well as of time response correction for profiling applications, and provide requirements for a successful field deployment. In addition, all required steps to post-correct oxygen optode data will be discussed. We hope this summary will serve as a comprehensive, yet concise reference to help people get started with oxygen observations, ensure successful sensor deployments and acquisition of highest quality data, and facilitate post-treatment of oxygen data. In the end, we hope that this will lead to more and higher-quality oxygen observations and help to advance our understanding of ocean biogeochemistry in a changing ocean.
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  • 62
    Publication Date: 2021-04-21
    Description: Anthropogenic activities have resulted in enhanced lead (Pb) emissions to the environment over the past century, mainly through the combustion of leaded gasoline. Here, we present the first combined dissolved (DPb), labile (LpPb) and particulate (PPb) Pb dataset from the Northeast Atlantic (Celtic Sea) since the phasing out of leaded gasoline in Europe. Concentrations of DPb in surface waters have decreased by 4-fold over the last four decades. We demonstrate that anthropogenic Pb is transported from the Mediterranean Sea over long distances (〉2500 km). Benthic DPb fluxes exceeded the atmospheric Pb flux in the region, indicating the importance of sediments as a contemporary Pb source. A strong positive correlation between DPb, PPb and LpPb indicates a dynamic equilibrium between the phases and the potential for particles to ‘buffer’ the DPb pool. This study provides insights into Pb biogeochemical cycling and demonstrates the potential of Pb in constraining ocean circulation patterns.
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  • 63
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 123 (2). pp. 1471-1484.
    Publication Date: 2021-02-08
    Description: The variability of the Atlantic Meridional Overturning Circulation (AMOC) may play a role in sea surface temperature predictions on seasonal to decadal time scales. Therefore, AMOC seasonal cycles are a potential baseline for interpreting predictions. Here we present estimates for the seasonal cycle of transports of volume, temperature, and freshwater associated with the upper limb of the AMOC in the eastern subpolar North Atlantic on the Extended Ellett Line hydrographic section between Scotland and Iceland. Due to weather, ship‐based observations are primarily in summer. Recent glider observations during other seasons present an opportunity to investigate the seasonal variability in the upper layer of the AMOC. First, we document a new method to quality control and merge ship, float, and glider hydrographic observations. This method accounts for the different spatial sampling rates of the three platforms. The merged observations are used to compute seasonal cycles of volume, temperature, and freshwater transports in the Rockall Trough. These estimates are similar to the seasonal cycles in two eddy‐resolving ocean models. Volume transport appears to be the primary factor modulating other Rockall Trough transports. Finally, we show that the weakest transports occur in summer, consistent with seasonal changes in the regional‐scale wind stress curl. Although the seasonal cycle is weak compared to other variability in this region, the amplitude of the seasonal cycle in the Rockall Trough, roughly 0.5–1 Sv about a mean of 3.4 Sv, may account for up to 7–14% of the heat flux between Scotland and Greenland.
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  • 64
    Publication Date: 2018-03-26
    Description: The diversity of stony corals displays one of the most exemplary latitudinal gradients on the planet, yet the evolutionary dynamics that produced this pattern remains unclear. Using both paleontological and distributional data, we compare the origination, extinction and immigration levels between low and high latitudes since the earliest proliferation of the group during the mid‐Triassic. Altogether, first and last occurrence localities in the fossil record do not support a positive preference towards either latitudinal bin. Nonetheless, considering past and present scleractinian fauna, the process of extinction has been apparently more pronounced at higher latitudes based on face values and correlation coefficients. Far above these differences, immigration of extant taxa has been substantially higher towards the tropics than to temperate regions. While the net dispersal toward low latitudes persists in all temporal intervals, the gradient of diversity was largely built up during the Cenozoic Era and only becomes significantly steep from the Neogene Period onwards. This dynamic supports the ‘into the tropical museum’ model, which suggests that tropics have historically acted as a center of accumulation for marine biodiversity.
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  • 65
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    Wiley
    In:  International Journal for Numerical and Analytical Methods in Geomechanics, 31 (3). pp. 373-393.
    Publication Date: 2018-04-24
    Description: In contrast to continuum systems where localization or shear banding arises through a bifurcation in a predefined system of differential equations, shear bands emerge in numerical simulations of deforming granular systems with no prescribed mathematical relations other than simple contact forces between particles. Shear bands emerge from the self‐organization of large numbers of particles with long‐range geometrical interactions playing a dominant role; both translation and rotation of particles are important. Granular media therefore deform more like materials with non‐local constitutive relations than materials where only first‐order interactions are relevant. In this paper we adopt a thermo‐mechanical approach and explore the fluxes of energy in the evolving granular system (that has cohesion as well as friction between the particles) as it is loaded through the unstable localization regime, and track the evolution of energy dissipation. As in continua, the sign of the second‐order work defines the emergence of instability in the system. Initially, these instabilities decay into stable configurations of particles but with continued loading, force chains collapse locally to generate geometrically necessary fractures. These zones then propagate to generate localization zones. When these fractures form a continuous network, the system is at the percolation thresh‐hold for broken bonds. However, long before this stage, the second‐order work fluctuates in bursts weakly correlated with bursts in kinetic energy as damage accumulates. This behaviour suggests that any continuum constitutive description of granular media must be (i) non‐local in an anisotropic manner, (ii) micro‐polar, and (iii) involve damage evolution.
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  • 66
    Publication Date: 2021-02-08
    Description: Marine life is controlled by multiple physical and chemical drivers and by diverse ecological processes. Many of these oceanic properties are being altered by climate change and other anthropogenic pressures. Hence, identifying the influences of multifaceted ocean change, from local to global scales, is a complex task. To guide policy-making and make projections of the future of the marine biosphere, it is essential to understand biological responses at physiological, evolutionary and ecological levels. Here, we contrast and compare different approaches to multiple driver experiments that aim to elucidate biological responses to a complex matrix of ocean global change. We present the benefits and the challenges of each approach with a focus on marine research, and guidelines to navigate through these different categories to help identify strategies that might best address research questions in fundamental physiology, experimental evolutionary biology and community ecology. Our review reveals that the field of multiple driver research is being pulled in complementary directions: the need for reductionist approaches to obtain process-oriented, mechanistic understanding and a requirement to quantify responses to projected future scenarios of ocean change. We conclude the review with recommendations on how best to align different experimental approaches to contribute fundamental information needed for science-based policy formulation.
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  • 67
    Publication Date: 2018-12-17
    Description: We report a new method for calibrating the current gain of 1013 Ω amplifiers in both positive and negative mode used in thermal ionisation mass spectrometry (TIMS). This method uses any isotopic standard or sample to calibrate the gain factor as long as it can produce a stable current signal. It is simpler and more flexible than that recommended by Thermo‐Fisher (the manufacture of the TIMS). In these analyses, the gains of five 1013 Ω amplifiers were assessed. The precision of gain factors was better than 100 ppm (2 RSD) in a day, and the long‐term reproducibility was better than 300 ppm (2 RSD) within 2 to 8 months. After a gain was calibrated, the ratio accuracy and precision in the positive mode for 87Sr/88Sr of NIST 987 Sr and 143Nd/144Nd of La Jolla Nd were 0.710242 ± 60 (2 SD, n = 14) and 0.511842 ± 10 (2 SD, n = 22), respectively, at intensities of 88Sr 0.3 V and 142Nd 0.4 V, while in the negative mode for 187Os/188Os of Merck Os was 0.120229 ± 34 (2 SD, n = 23) at an intensity of 187OsO3 0.01 mV. In addition, a difference in the gain factors between the negative mode TIMS (NTIMS) and positive mode TIMS (PTIMS) has been recognized. The values of the gain factor for NTIMS and PTIMS show a deviation of 0.54% on the Triton and 0.31% on the Triton Plus TIMS in this study; therefore, gain calibration should be carried out on both NTIMS and PTIMS. Moreover, a bias of ~ 1.5 × 10−5 between H and L Faraday cups for the same 1013 Ω amplifier has been detected, hinting that the efficiency of different Faraday cups may affect the gain factors, which can be eliminated through the new method of “cross‐calibration” discribed in this study.
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  • 68
    Publication Date: 2021-02-08
    Description: Climate change will not only shift environmental means but will also increase the intensity of extreme events, exerting additional stress on ecosystems. While field observations on the ecological consequences of heat waves are emerging, experimental evidence is rare, and lacking at the community level. Using a novel "near-natural" outdoor mesocosms approach, this study tested whether marine summer heat waves have detrimental consequences for macrofauna of a temperate coastal community, and whether sequential heat waves provoke an increase or decrease of sensitivity to thermal stress. Three treatments were applied, defined and characterized through a statistical analysis of 15 years of temperature records from the experimental site: (1) no heat wave, (2) two heat waves in June and July followed by a summer heat wave in August and (3) the summer heat wave only. Overall, 50% of the species showed positive, negative or positive/negative responses in either abundance and/or biomass. We highlight four possible ways in which single species responded to either three subsequent heat waves or one summer heat wave: (1) absence of a response (tolerance, 50% of species), (2) negative accumulative effects by three subsequent heat waves (tellinid bivalve), (3) buffering by proceeding heat waves due to acclimation and/or shifts in phenology (spionid polychaete) and (4) an accumulative positive effect by subsequent heat waves (amphipod). The differential responses to single or sequential heat waves at the species level entailed shifts at the community level. Community-level differences between single and triple heat waves were more pronounced than those between regimes with vs. without heat waves. Detritivory was reduced by the single heat wave while suspension feeding was less common in the triple heat wave regime. Critical extreme events occur already today and will occur more frequently in a changing climate, thus, leading to detrimental impacts on coastal marine systems.
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  • 69
    Publication Date: 2021-02-08
    Description: Increasing interest in deep-sea mineral resources, such as polymetallic nodules, calls for environmental research about possible impacts of mineral exploitation on the deep-sea ecosystem. So far, little geochemical comparisons of deep-sea sediments before and after mining induced disturbances have been made, and thus long-term environmental effects of deep-sea mining are unknown. Here we present geochemical data from sediment cores from an experimental disturbance area at 4,100 m water depth in the Peru Basin. The site was revisited in 2015, 26 years after a disturbance experiment mimicking nodule mining was carried out and compared to sites outside the experimental zone which served as a pre-disturbance reference. We investigated if signs of the disturbance are still visible in the solid phase and the pore water after 26 years or if pre-disturbance conditions have been re-established. Additionally, a new disturbance was created during the cruise and sampled 5 weeks later to compare short- and longer-term impacts. The particulate fraction and pore water were analyzed for major and trace elements to study element distribution and processes in the surface sediment. Pore water and bottom water samples were also analyzed for oxygen, nitrate, dissolved organic carbon, and dissolved amino acids, to examine organic matter degradation processes. The study area of about 11 km2 was found to be naturally more heterogeneous than expected, requiring an analysis of spatial variability before the disturbed and undisturbed sites can be compared. The disturbed sites exhibit various disturbance features: some surface sediments were mixed through, others had the top layer removed and some had additional material deposited on top. Pore water constituents have largely regained pre-disturbance gradients after 26 years. The solid phase, however, shows clear differences between disturbed and undisturbed sites in the top 20 cm so that the impact is still visible in the plowed tracks after 26 years. Especially the upper layer, usually rich in manganese-oxide and associated metals, such as Mo, Ni, Co, and Cu, shows substantial differences in metal distribution. Hence, it can be expected that disturbances from polymetallic nodule mining will have manifold and long-lasting impacts on the geochemistry of the underlying sediment.
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  • 70
    Publication Date: 2019-02-01
    Description: The hydrothermal mats, mounds, and chimneys of the southern Guaymas Basin are the surface expression of complex subsurface hydrothermal circulation patterns. In this overview, we document the most frequently visited features of this hydrothermal area with photographs, temperature measurements, and selected geochemical data; many of these distinct habitats await characterization of their microbial communities and activities. Microprofiler deployments on microbial mats and hydrothermal sediments show their steep geochemical and thermal gradients at millimeter-scale vertical resolution. Mapping these hydrothermal features and sampling locations within the southern Guaymas Basin suggest linkages to underlying shallow sills and heat flow gradients. Recognizing the inherent spatial limitations of much current Guaymas Basin sampling calls for comprehensive surveys of the wider spreading region.
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  • 71
    Publication Date: 2021-02-08
    Description: We present a crustal-scale seismic profile in the Barents Sea based on new data. Wide-angle seismic data were recorded along a 600 km long profile at 38 ocean bottom seismometer and 52 onshore station locations. The modeling uses the joint refraction/reflection tomography approach where co-located multi-channel seismic reflection data constrain the sedimentary structure. Further, forward gravity modeling is based on the seismic model. We also calculate net regional erosion based on the calculated shallow velocity structure. Our model reveals a complex crustal structure of the Baltic Shield to Barents shelf transition zone, as well as strong structural variability on the shelf itself. We document large volumes of pre-Carboniferous sedimentary strata in the transition zone which reach a total thickness of 10 km. A high-velocity crustal domain found below the Varanger Peninsula likely represents an independent crustal block. Large lower crustal bodies with very high velocity and density below the Varanger Peninsula and the Fedynsky High are interpreted as underplated material that may have fed mafic dykes in the Devonian. We speculate that these lower crustal bodies are linked to the Devonian rifting processes in the East European Craton, or belonging to the integral part of the Timanides, as observed onshore in the Pechora Basin.
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  • 72
    Publication Date: 2018-06-26
    Description: The movement of magma through the shallow crust and the impact of subsurface sill complexes on the hydrocarbon systems of prospective sedimentary basins has long been an area of interest and debate. Based on 3D seismic reflection and well data, we present a regional analysis of the emplacement and magmatic plumbing system of the Palaeogene Faroe‐Shetland Sill Complex (FSSC), which is intruded into the Mesozoic and Cenozoic sequences of the Faroe‐Shetland Basin (FSB). Identification of magma flow directions through detailed seismic interpretation of approximately 100 sills indicates that the main magma input zones into the FSB were controlled primarily by the NE–SW basin structure that compartmentalise the FSB into its constituent sub‐basins. An analysis of well data shows that potentially up to 88% of sills in the FSSC are 〈40 m in thickness, and thus below the vertical resolution limit of seismic data at depths at which most sills occur. This resolution limitation suggests that caution needs to be exercised when interpreting magmatic systems from seismic data alone, as a large amount of intrusive material could potentially be missed. The interaction of the FSSC with the petroleum systems of the FSB is not well understood. Given the close association between the FSSC and potential petroleum migration routes into some of the oil/gas fields (e.g. Tormore), the role the intrusions may have played in compartmentalisation of basin fill needs to be taken fully into account to further unlock the future petroleum potential of the FSB.
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  • 73
    Publication Date: 2021-02-08
    Description: We reanalyze existing paleodata of global mean surface temperature ΔTg and radiative forcing ΔR of CO2 and land ice albedo for the last 800,000 years to show that a state‐dependency in paleoclimate sensitivity S, as previously suggested, is only found if ΔTg is based on reconstructions, and not when ΔTg is based on model simulations. Furthermore, during times of decreasing obliquity (periods of land‐ice sheet growth and sea level fall) the multi‐millennial component of reconstructed ΔTg diverges from CO2, while in simulations both variables vary more synchronously, suggesting that the differences during these times are due to relatively low rates of simulated land ice growth and associated cooling. To produce a reconstruction‐based extrapolation of S for the future we exclude intervals with strong ΔTg‐CO2 divergence and find that S is less state‐dependent, or even constant (state‐independent), yielding a mean equilibrium warming of 2–4 K for a doubling of CO2.
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  • 74
    Publication Date: 2021-02-08
    Description: Marine macrophytes are the foundation of algal forests and seagrass meadows-some of the most productive and diverse coastal marine ecosystems on the planet. These ecosystems provide nursery grounds and food for fish and invertebrates, coastline protection from erosion, carbon sequestration, and nutrient fixation. For marine macrophytes, temperature is generally the most important range limiting factor, and ocean warming is considered the most severe threat among global climate change factors. Ocean warming induced losses of dominant macrophytes along their equatorial range edges, as well as range extensions into polar regions, are predicted and already documented. While adaptive evolution based on genetic change is considered too slow to keep pace with the increasing rate of anthropogenic environmental changes, rapid adaptation may come about through a set of non-genetic mechanisms involving the functional composition of the associated microbiome, as well as epigenetic modification of the genome and its regulatory effect on gene expression and the activity of transposable elements. While research in terrestrial plants demonstrates that the integration of non-genetic mechanisms provide a more holistic picture of a species' evolutionary potential, research in marine systems is lagging behind. Here, we aim to review the potential of marine macrophytes to acclimatize and adapt to major climate change effects via intraspecific variation at the genetic, epigenetic, and microbiome levels. All three levels create phenotypic variation that may either enhance fitness within individuals (plasticity) or be subject to selection and ultimately, adaptation. We review three of the most important phenotypic variations in a climate change context, including physiological variation, variation in propagation success, and in herbivore resistance. Integrating different levels of plasticity, and adaptability into ecological models will allow to obtain a more holistic understanding of trait variation and a realistic assessment of the future performance and distribution of marine macrophytes. Such multi-disciplinary approach that integrates various levels of intraspecific variation, and their effect on phenotypic and physiological variation, is of crucial importance for the effective management and conservation of seagrasses and macroalgae under climate change.
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  • 75
    Publication Date: 2019-02-01
    Description: The Earth's mantle convects to lose heat (Holmes, 1931); doing so drives plate tectonics (Turcotte and Oxburgh, 1967). Significant gravitational energy is created by the cooling of oceanic lithosphere atop hotter, less dense mantle. When slabs subduct, this gravitational energy is mostly (~86% for whole mantle flow in a PREM-like mantle) transformed into heat by viscous dissipation. Using this perspective, we reassess the energetics of Earth's mantle. We also reconsider the terrestrial abundances of heat producing elements U, Th, and K, and argue they are lower than previously considered and that consequently the heat produced by radioactive decay within the mantle is comparable to the present-day potential gravitational energy release by subducting slabs—both are roughly ~10–12 TW. We reassess possible core heat flow into the base of the mantle, and determine that the core may be still losing a significant amount of heat from its original formation, potentially more than the radioactive heat generation within the mantle. These factors are all likely to be important for Earth's current energetics, and argue that strong plume-driven upwelling is likely to exist within the convecting mantle.
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  • 76
    Publication Date: 2019-02-01
    Description: Chlorophyll (Chl) is a distinctive component of autotrophic organisms, often used as an indicator of phytoplankton biomass in the ocean. However, assessment of phytoplankton biomass from Chl relies on the accurate estimation of the Chl:carbon(C) ratio. Here we present global patterns of Chl:C ratios in the surface ocean obtained from a phytoplankton growth model that accounts for the optimal acclimation of phytoplankton to ambient nutrient, light, and temperature conditions. The model agrees largely with observed/expected global patterns of Chl:C. Combining our Chl:C estimates with satellite Chl and particulate organic carbon (POC), we infer phytoplankton C concentration in the surface ocean and its contribution to the total POC pool. Our results suggest that the portion of POC corresponding to living phytoplankton is higher in subtropical latitudes and less productive regions (∼30–70%) and decreases to ∼10–30% toward high latitudes and productive regions. An important caveat of our model is the lack of iron limiting effects on phytoplankton physiology. Comparison of our predicted phytoplankton biomass with an independent estimate of total POC reveals a positive correlation between nitrate concentrations and nonphotosynthetic POC in the surface ocean. This correlation disappears when a constant Chl:C is applied. Our analysis is not constrained by assumptions of constant Chl:C or phytoplankton:POC ratio, providing a novel independent analysis of phytoplankton biomass in the surface ocean. These results highlight the importance of accounting for the variability in Chl:C and its application in distinguishing the autotrophic and heterotrophic components in the assemblage of the marine plankton ecosystem.
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  • 77
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    AGU (American Geophysical Union) | Wiley
    In:  Earth's Future, 5 (1). pp. 128-134.
    Publication Date: 2020-02-06
    Description: The historical developments are reviewed that have led from a bottom-up responsibility initiative of concerned scientists to the emergence of a nationwide interdisciplinary Priority Program on the assessment of Climate Engineering (CE), funded by the German Research Foundation (DFG). Given the perceived lack of comprehensive and comparative appraisals of different CE methods, the Priority Program was designed to encompass both solar radiation management (SRM) and carbon dioxide removal (CDR) ideas, and to cover the atmospheric, terrestrial and oceanic realm. First key findings obtained by the ongoing Priority Program are summarized and reveal that compared to earlier assessments, such as the 2009 Royal Society report, more detailed investigations tend to indicate less efficiency, lower effectiveness and often lower safety. Emerging research trends are discussed in the context of the recent Paris agreement to limit global warming to less than two degrees and the associated increasing reliance on negative emission technologies. Our results show then when deployed at scales large enough to have a significant impact on atmospheric CO2, even CDR methods such as afforestation – often perceived as ‘benign’ – can have substantial side effects and may raise severe ethical, legal and governance issues. We suppose that before being deployed at climatically relevant scales, any negative-emission or climate engineering method will require careful analysis of efficiency, effectiveness and undesired side effects.
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  • 78
    Publication Date: 2020-02-06
    Description: Selecting appropriate indicators is essential to aggregate the information provided by climate model outputs into a manageable set of relevant metrics on which assessments of climate engineering (CE) can be based. From all the variables potentially available from climate models, indicators need to be selected that are able to inform scientists and society on the development of the Earth system under CE, as well as on possible impacts and side effects of various ways of deploying CE or not. However, the indicators used so far have been largely identical to those used in climate change assessments and do not visibly reflect the fact that indicators for assessing CE (and thus the metrics composed of these indicators) may be different from those used to assess global warming. Until now, there has been little dedicated effort to identifying specific indicators and metrics for assessing CE. We here propose that such an effort should be facilitated by a more decision-oriented approach and an iterative procedure in close interaction between academia, decision makers, and stakeholders. Specifically, synergies and trade-offs between social objectives reflected by individual indicators, as well as decision-relevant uncertainties should be considered in the development of metrics, so that society can take informed decisions about climate policy measures under the impression of the options available, their likely effects and side effects, and the quality of the underlying knowledge base.
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  • 79
    Publication Date: 2020-02-06
    Description: The consequences of emerging marine diseases on the evolutionary trajectories of affected host populations in the marine realm are largely unexplored. Evolution in response to natural selection depends on the genetic variation of the traits under selection and the interaction of these traits with the environment (GxE). However, in the case of diseases, genotypes of pathogens add another dimension to this interaction. Therefore, the study of disease resistance needs to be extended to the interaction of host genotype, pathogen genotype and environment (GxGxE). In the present study we used a full-sib breeding design crossing two genetically differentiated populations of the Pacific oyster Crassostrea gigas (Thunberg, 1793), to determine the influence of host genotype, pathogen genotype and temperature on disease resistance. Based on a controlled infection experiment on two early life stages, i.e. D-larvae and Pediveliger larvae at elevated and ambient water temperatures we estimated disease resistance to allopatric and sympatric Vibrio sp. by measuring survival and growth within and between genetically differentiated oyster populations. In both populations survival was higher upon infection with sympatric Vibrio sp. indicating that disease resistance has a genetic basis and is dependent on host genotype. In addition we observed a significant GxGxE effect in D-larvae, where contrary to expectations, disease resistance was higher at warm than at cold temperatures. Using thermal reaction norms, we could further show, that disease resistance is an environment dependent trait with high plasticity, which indicates the potential for a fast acclimatization to changing environmental conditions. These population specific reaction norms disappeared in hybrid crosses between both populations which demonstrates that admixture between genetically differentiated populations can influence GxGxE interactions on larger scales.
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  • 80
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    Frontiers
    In:  Frontiers in Microbiology, 7 . p. 2102.
    Publication Date: 2019-02-01
    Description: Sponges have a significant impact on marine benthic communities, they are of biotechnological interest owing to their production of bioactive natural compounds, and they promise to provide insights into conserved mechanisms of host–microbe interactions in basal metazoans. The natural variability of sponge-microbe associations across species and environments provides a meaningful ecological and evolutionary framework to investigate animal-microbial symbiosis through experimentation in the field and also in aquaria. In addition, next-generation sequencing technologies have shed light on the genomic repertoire of the sponge host and revealed metabolic capacities and symbiotic lifestyle features of their microbiota. However, our understanding of symbiotic mechanisms is still in its infancy. Here, we discuss the potential and limitations of the sponge-microbe symbiosis as emerging models for animal-associated microbiota.
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  • 81
    Publication Date: 2019-02-01
    Description: Superoxide (O−2) is a short lived reactive oxygen species (ROS) formed in seawater by photochemical or biological sources, it is important in the redox cycling of trace elements and organic matter in the ocean. The photoproduction of O−2 is now thought to involve reactions between O2 and reactive reducing (radical) intermediates formed from dissolved organic matter (DOM) via intramolecular reactions between excited singlet state donors and ground-state acceptors (Zhang et al., 2012). In seawater the main pathways identified for the decomposition of O−2 into H2O2 and O2, involve reactions with Cu, Mn, and DOM. In productive regions of the ocean, the reaction between DOM and O−2 can be a significant sink for O−2. Thus, DOM is a key component of both the formation and decomposition of O−2 and formation of H2O2. In the present work we examined the relationships between O−2 decay rates and parameters associated with chromophoric dissolved organic matter (CDOM) and fluorescent dissolved organic matter (FDOM) by using the thermal O−2 source SOTS-1. Filtered samples (0.2 μm) were run both in the presence, and absence, of the metal chelator diethylenetriaminepentaacetic acid (DTPA) to determine the contribution from DOM. Samples were collected along a transect across the continental shelf of the Mauritanian continental shelf during a period of upwelling. In this region we found that reactions with DOM, are a significant sink for O−2 in the Mauritanian Upwelling, constituting on average 58 ± 13% of the O−2 loss rates. Superoxide reactivity with organic matter showed no clear correlation with bulk CDOM or FDOM properties (as assessed by PARAFAC analysis) suggesting that future work should concentrate at the functional group level to clearly elucidate which molecular species are involved as bulk properties represent a wide spread of chemical moieties with different O−2 reactivities. Analysis of FDOM parameters indicates that many of the markers used previously for terrestrial sources of DOM and FDOM are called into question as marine sources exist. In particular recent work (Rico et al., 2013) indicates that algal species may also produce syringic, vanillic, and cinnamic acids, which had previously been ascribed solely to terrestrial vegetation.
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  • 82
    Publication Date: 2020-02-06
    Description: Carbohydrates represent an important fraction of labile and semi-labile marine organic matter that is mainly comprised of exopolymeric substances derived from phytoplankton exudation and decay. This study investigates the composition of total combined carbohydrates (tCCHO; 〉1 kDa) and the community development of free-living (0.2–3 μm) and particle-associated (PA) (3–10 μm) bacterioplankton during a spring phytoplankton bloom in the southern North Sea. Furthermore, rates were determined for the extracellular enzymatic hydrolysis that catalyzes the initial step in bacterial organic matter remineralization. Concentrations of tCCHO greatly increased during bloom development, while the composition showed only minor changes over time. The combined concentration of glucose, galactose, fucose, rhamnose, galactosamine, glucosamine, and glucuronic acid in tCCHO was a significant factor shaping the community composition of the PA bacteria. The richness of PA bacteria greatly increased in the post-bloom phase. At the same time, the increase in extracellular β-glucosidase activity was sufficient to explain the observed decrease in tCCHO, indicating the efficient utilization of carbohydrates by the bacterioplankton community during the post-bloom phase. Our results suggest that carbohydrate concentration and composition are important factors in the multifactorial environmental control of bacterioplankton succession and the enzymatic hydrolysis of organic matter during phytoplankton blooms.
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  • 83
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 120 (11). pp. 7413-7449.
    Publication Date: 2018-05-29
    Description: Mesoscale eddies are ubiquitous features in the Southern Ocean, yet their phenomenology is not well quantified. To tackle this task, we use satellite observations of sea level anomalies and sea surface temperature (SST) as well as in situ temperature and salinity measurements from profiling floats. Over the period 1997–2010, we identified over a million mesoscale eddy instances and were able to track about 105 of them over 1 month or more. The Antarctic Circumpolar Current (ACC), the boundary current systems, and the regions where they interact are hot spots of eddy presence, representing also the birth places and graveyards of most eddies. These hot spots contrast strongly to areas shallower than about 2000 m, where mesoscale eddies are essentially absent, likely due to topographical steering. Anticyclones tend to dominate the southern subtropical gyres, and cyclones the northern flank of the ACC. Major causes of regional polarity dominance are larger formation numbers and lifespans, with a contribution of differential propagation pathways of long-lived eddies. Areas of dominance of one polarity are generally congruent with the same polarity being longer-lived, bigger, of larger amplitude, and more intense. Eddies extend down to at least 2000 m. In the ACC, eddies show near surface temperature and salinity maxima, whereas eddies in the subtropical areas generally have deeper anomaly maxima, presumably inherited from their origin in the boundary currents. The temperature and salinity signatures of the average eddy suggest that their tracer anomalies are a result of both trapping in the eddy core and stirring.
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  • 84
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    Wiley
    In:  Methods in Ecology and Evolution, 6 (11). pp. 1248-1258.
    Publication Date: 2017-02-16
    Description: Genome-scan methods are used for screening genomewide patterns of DNA polymorphism to detect signatures of positive selection. There are two main types of methods: (i) ‘outlier’ detection methods based on inline image that detect loci with high differentiation compared to the rest of the genome and (ii) environmental association methods that test the association between allele frequencies and environmental variables. We present a new inline image-based genome-scan method, BayeScEnv, which incorporates environmental information in the form of ‘environmental differentiation’. It is based on the F model, but, as opposed to existing approaches, it considers two locus-specific effects: one due to divergent selection and the other due to various other processes different from local adaptation (e.g. range expansions, differences in mutation rates across loci or background selection). The method was developped in C++ and is available at http://github.com/devillemereuil/bayescenv. A simulation study shows that our method has a much lower false positive rate than an existing inline image-based method, BayeScan, under a wide range of demographic scenarios. Although it has lower power, it leads to a better compromise between power and false positive rate. We apply our method to a human data set and show that it can be used successfully to study local adaptation. We discuss its scope and compare it to other existing methods.
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  • 85
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Oceans, 122 (3). pp. 1724-1748.
    Publication Date: 2020-02-06
    Description: Over the past 17 years, the western boundary current system of the Labrador Sea has been closely observed by maintaining the 53°N observatory (moorings and shipboard station data) measuring the top-to-bottom flow field offshore from the Labrador shelf break. Volume transports for the North Atlantic Deep Water (NADW) components were calculated using different methods, including gap filling procedures for deployment periods with suboptimal instrument coverage. On average the Deep Western Boundary Current (DWBC) carries 30.2 ± 6.6 Sv of NADW southward, which are almost equally partitioned between Labrador Sea Water (LSW, 14.9 ± 3.9 Sv) and Lower North Atlantic Deep Water (LNADW, 15.3 ± 3.8 Sv). The transport variability ranges from days to decades, with the most prominent multiyear fluctuations at interannual to near decadal time scales (±5 Sv) in the LNADW overflow water mass. These long-term fluctuations appear to be in phase with the NAO-modulated wind fluctuations. The boundary current system off Labrador occurs as a conglomerate of nearly independent components, namely, the shallow Labrador Current, the weakly sheared LSW range, and the deep baroclinic, bottom-intensified current core of the LNADW, all of which are part of the cyclonic Labrador Sea circulation. This structure is relatively stable over time, and the 120 km wide boundary current is constrained seaward by a weak counterflow which reduces the deep water export by 10–15%.
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  • 86
    Publication Date: 2020-02-06
    Description: Theory of local adaptation predicts that nonadapted migrants will suffer increased costs compared to local residents. Ultimately this process can result in the reduction of gene flow and culminate in speciation. Here, we experimentally investigated the relative fitness of migrants in foreign habitats, focusing on diverging lake and river ecotypes of three-spined sticklebacks. A reciprocal transplant experiment performed in the field revealed asymmetric costs of migration: whereas mortality of river fish was increased under lake conditions, lake migrants suffered from reduced growth relative to river residents. Selection against migrants thus involved different traits in each habitat but generally contributed to bidirectional reduction in gene flow. Focusing particularly on the parasitic environments, migrant fish differed from resident fish in the parasite community they harboured. This pattern correlated with both cellular phenotypes of innate immunity as well as with allelic variation at the genes of the major histocompatibility complex. In addition to showing the costs of migration in three-spined sticklebacks, this study highlights the role of asymmetric selection particularly from parasitism in genotype sorting and in the emergence of local adaptation.
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  • 87
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    Wiley
    In:  Evolutionary Applications, 10 (5). pp. 514-528.
    Publication Date: 2020-02-06
    Description: Trans-generational plasticity is the adjustment of phenotypes to changing habitat conditions that persist longer than the individual lifetime. Fitness benefits (adaptive TGP) are expected upon matching parent-offspring environments. In a global change scenario, several performance-related environmental factors are changing simultaneously. This lowers the predictability of offspring environmental conditions, potentially hampering the benefits of trans-generational plasticity. For the first time, we here explore how the combination of an abiotic and a biotic environmental factor in the parental generation plays out as trans-generational effect in the offspring. We fully reciprocally exposed the parental generation of the pipefish Syngnathus typhle to an immune challenge and elevated temperatures simulating a naturally occurring heatwave. Upon mating and male pregnancy, offspring were kept in ambient or elevated temperature regimes combined with a heat-killed bacterial epitope treatment. Differential gene expression (immune genes and DNA- and histone-modification genes) suggests that the combined change of an abiotic and a biotic factor in the parental generation had interactive effects on offspring performance, the temperature effect dominated over the immune challenge impact. The benefits of certain parental environmental conditions on offspring performance did not sum up when abiotic and biotic factors were changed simultaneously supporting that available resources that can be allocated to phenotypic trans-generational effects are limited. Temperature is the master regulator of trans-generational phenotypic plasticity, which potentially implies a conflict in the allocation of resources towards several environmental factors. This asks for a reassessment of trans-generational plasticity as a short-term option to buffer environmental variation in the light of climate change.
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  • 88
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    Wiley
    In:  In: The last great ice sheets. , ed. by Denton, G. H. and Hughes, T. J. Wiley, New York, pp. 179-206. ISBN 0-471-06006-2
    Publication Date: 2017-04-10
    Type: Book chapter , NonPeerReviewed
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  • 89
    Publication Date: 2020-02-06
    Description: The dichotomy between high microbial abundance (HMA) and low microbial abundance (LMA) sponges has been observed in sponge-microbe symbiosis, although the extent of this pattern remains poorly unknown. We characterized the differences between the microbiomes of HMA (n=19) and LMA (n=17) sponges (575 specimens) present in the Sponge Microbiome Project. HMA sponges were associated with richer and more diverse microbiomes than LMA sponges, as indicated by the comparison of alpha diversity metrics. Microbial community structures differed between HMA and LMA sponges considering Operational Taxonomic Units (OTU) abundances and across microbial taxonomic levels, from phylum to species. The largest proportion of microbiome variation was explained by the host identity. Several phyla, classes, and OTUs were found differentially abundant in either group, which were considered “HMA indicators” and “LMA indicators”. Machine learning algorithms (classifiers) were trained to predict the HMA-LMA status of sponges. Among nine different classifiers, higher performances were achieved by Random Forest trained with phylum and class abundances. Random Forest with optimized parameters predicted the HMA-LMA status of additional 135 sponge species (1,232 specimens) without a priori knowledge. These sponges were grouped in four clusters, from which the largest two were composed of species consistently predicted as HMA (n=44) and LMA (n=74). In summary, our analyses shown distinct features of the microbial communities associated with HMA and LMA sponges. The prediction of the HMA-LMA status based on the microbiome profiles of sponges demonstrates the application of machine learning to explore patterns of host-associated microbial communities.
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  • 90
    Publication Date: 2020-02-06
    Description: Redox-sensitive mobilization of nutrients from sediments strongly affects the eutrophic state of the central Baltic Sea; a region associated with the spread of hypoxia and almost permanently anoxic and sulfidic conditions in the deeper basins. Ventilation of these basins depends on renewal by inflow of water enriched in oxygen (O2) from the North Sea, occurring roughly once per decade. Benthic fluxes and water column distributions of dissolved inorganic nitrogen species, phosphate (PO43-), dissolved inorganic carbon (DIC), sulfide (HS-), and total oxygen uptake (TOU) were measured along a depth gradient in the Eastern Gotland Basin (EGB). Campaigns were conducted during euxinic conditions of the deep basin in Aug./Sept. 2013 and after two inflow events in July/Aug. 2015 and March 2016 when O2 concentrations in deep waters reached 60 μM. The intrusion of O2-rich North Sea water into the EGB led to an approximate 33 and 10% reduction of the seabed PO43- and ammonium (NH4+) release from deep basin sediments. Post-inflow, the deep basin sediment was rapidly colonized by HS- oxidizing bacteria tentatively assigned to the family Beggiatoaceae, and HS- release was completely suppressed. The presence of a hypoxic transition zone (HTZ) between 80 and 120 m water depth was confirmed not only for euxinic deep-water conditions during 2013 but also for post-inflow conditions. Because deep-water renewal did not ventilate the HTZ, where PO43- and NH4+ fluxes were highest, high seabed nutrient release there was relatively unchanged. Extrapolation of the in situ nutrient fluxes indicated that, overall, the reduction in PO43- and NH4+ release in response to deep-water renewal can be considered as minor, reducing the internal nutrient load by 2 and 12% only, respectively. Infrequent inflow events thus have a limited capacity to sustainably reduce internal nutrient loading in the EGB and mitigate eutrophication.
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  • 91
    Publication Date: 2020-02-06
    Description: Cold-water corals are important bioengineers that provide structural habitat for a diverse species community. About 70% of the presently known scleractinian cold-water corals are expected to be exposed to corrosive waters by the end of this century due to ocean acidification. At the same time, the corals will experience a steady warming of their environment. Studies on the sensitivity of cold-water corals to climate change mainly concentrated on single stressors in short-term incubation approaches, thus not accounting for possible long-term acclimatisation and the interactive effects of multiple stressors. Besides, preceding studies did not test for possible compensatory effects of a change in food availability. In this study a multifactorial long-term experiment (6 months) was conducted with end-of-the-century scenarios of elevated pCO2 and temperature levels in order to examine the acclimatisation potential of the cosmopolitan cold-water coral Lophelia pertusa to future climate change related threats. For the first time multiple ocean change impacts including the role of the nutritional status were tested on L. pertusa with regard to growth, “fitness,” and survival. Our results show that while L. pertusa is capable of calcifying under elevated CO2 and temperature, its condition (fitness) is more strongly influenced by food availability rather than changes in seawater chemistry. Whereas growth rates increased at elevated temperature (+4°C), they decreased under elevated CO2 concentrations (~800 μatm). No difference in net growth was detected when corals were exposed to the combination of increased CO2 and temperature compared to ambient conditions. A 10-fold higher food supply stimulated growth under elevated temperature, which was not observed in the combined treatment. This indicates that increased food supply does not compensate for adverse effects of ocean acidification and underlines the importance of considering the nutritional status in studies investigating organism responses under environmental changes.
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  • 92
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    Unknown
    AGU (American Geophysical Union) | Wiley
    In:  Global Biogeochemical Cycles, 31 (5). pp. 836-849.
    Publication Date: 2020-02-06
    Description: Primary productivity is limited by the availability of nitrogen (N) in most of the coastal Arctic, as a large portion of N is released by the spring freshet and completely consumed during the following summer. Thus, understanding the fate of riverine nitrogen is critical to identify the link between dissolved nitrogen dynamic and coastal primary productivity to foresee upcoming changes in the Arctic seas, such as increase riverine discharge and permafrost thaw. Here, we provide a field-based study of nitrogen dynamic over the Laptev Sea shelf based on isotope geochemistry. We demonstrate that while most of the nitrate found under the surface fresh water layer is of remineralized origin, some of the nitrate originates from atmospheric input and was probably transported at depth by the mixing of brine-enriched denser water during sea-ice formation. Moreover, our results suggest that riverine dissolved organic nitrogen (DON) represents up to 6 times the total riverine release of nitrate and that about 62 to 76% of the DON is removed within the shelf waters. This is a crucial information regarding the near-future impact of climate change on primary productivity in the Eurasian coastal Arctic.
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  • 93
    Publication Date: 2020-02-06
    Description: The identification of native sources and vectors of introduced species informs their ecological and evolutionary history and may guide policies that seek to prevent future introductions. Population genetics provides a powerful set of tools to identify origins and vectors. However, these tools can mislead when the native range is poorly sampled or few molecular markers are used. Here, we traced the introduction of the Asian seaweed Gracilaria vermiculophylla (Rhodophyta) into estuaries in coastal western North America, the eastern United States, Europe, and northwestern Africa by genotyping more than 2,500 thalli from 37 native and 53 non-native sites at mitochondrial cox1 and 10 nuclear microsatellite loci. Overall, greater than 90% of introduced thalli had a genetic signature similar to thalli sampled from the coastline of northeastern Japan, strongly indicating this region served as the principal source of the invasion. Notably, northeastern Japan exported the vast majority of the oyster Crassostrea gigas during the 20th century. The preponderance of evidence suggests G. vermiculophylla may have been inadvertently introduced with C. gigas shipments and that northeastern Japan is a common source region for estuarine invaders. Each invaded coastline reflected a complex mix of direct introductions from Japan and secondary introductions from other invaded coastlines. The spread of G. vermiculophylla along each coastline was likely facilitated by aquaculture, fishing, and boating activities. Our ability to document a source region was enabled by a robust sampling of locations and loci that previous studies lacked and strong phylogeographic structure along native coastlines.
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  • 94
    Publication Date: 2018-01-04
    Description: Marine researchers continue to create large quantities of benthic images e.g., using AUVs (Autonomous Underwater Vehicles). In order to quantify the size of sessile objects in the images, a pixel-to-centimeter ratio is required for each image, often indirectly provided through a geometric laser point (LP) pattern, projected onto the seafloor. Manual annotation of these LPs in all images is too time-consuming and thus infeasible for nowadays data volumes. Because of the technical evolution of camera rigs, the LP's geometrical layout and color features vary for different expeditions and projects. This makes the application of one algorithm, tuned to a strictly defined LP pattern, also ineffective. Here we present the web-tool DELPHI, that efficiently learns the LP layout for one image transect/collection from just a small number of hand labeled LPs and applies this layout model to the rest of the data. The efficiency in adapting to new data allows to compute the LPs and the pixel-to-centimeter ratio fully automatic and with high accuracy. DELPHI is applied to two real-world examples and shows clear improvements regarding reduction of tuning effort for new LP patterns as well as increasing detection performance.
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  • 95
    Publication Date: 2020-02-06
    Description: Nitrous oxide (N2O) is one of the most important greenhouse gases and a major sink for stratospheric ozone. Estuaries are sites of intense biological production and N2O emissions. We aimed to identify hot spots of N2O production and potential pathways contributing to N2O concentrations in the surface water of the tidal Elbe estuary. During two research cruises in April and June 2015, surface water N2O concentrations were measured along the salinity gradient of the Elbe estuary by using a laser-based on-line analyzer coupled to an equilibrator. Based on these high-resolution N2O profiles, N2O saturations, and fluxes across the surface water/atmosphere interface were calculated. Additional measurements of DIN concentrations, oxygen concentration, and salinity were performed. Highest N2O concentrations were determined in the Hamburg port region reaching maximum values of 32.3 nM in April 2015 and 52.2 nM in June 2015. These results identify the Hamburg port region as a significant hot spot of N2O production, where linear correlations of AOU-N2Oxs indicate nitrification as an important contributor to N2O production in the freshwater part. However, in the region with lowest oxygen saturation, sediment denitrification obviously affected water column N2O saturation. The average N2O saturation over the entire estuary was 201% (SD: ±94%), with an average estuarine N2O flux density of 48 μmol m−2 d−1 and an overall emission of 0.18 Gg N2O y−1. In comparison to previous studies, our data indicate that N2O production pathways over the whole estuarine freshwater part have changed from predominant denitrification in the 1980s toward significant production from nitrification in the present estuary. Despite a significant reduction in N2O saturation compared to the 1980s, N2O concentrations nowadays remain on a high level, comparable to the mid-90s, although a steady decrease of DIN inputs occurred over the last decades. Hence, the Elbe estuary still remains an important source of N2O to the atmosphere.
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  • 96
    facet.materialart.
    Unknown
    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Solid Earth, 122 (5). pp. 3334-3350.
    Publication Date: 2020-02-06
    Description: Marine controlled source electromagnetic (CSEM) data have been collected to investigate methane seep sites and associated gas hydrate deposits at Opouawe Bank on the southern tip of the Hikurangi Margin, New Zealand. The bank is located in about 1000 m water depth within the gas hydrate stability field. The seep sites are characterized by active venting and typical methane seep fauna accompanied with patchy carbonate outcrops at the seafloor. Below the seeps, gas migration pathways reach from below the bottom-simulating reflector (at around 380 m sediment depth) toward the seafloor, indicating free gas transport into the shallow hydrate stability field. The CSEM data have been acquired with a seafloor-towed, electric multi-dipole system measuring the inline component of the electric field. CSEM data from three profiles have been analyzed by using 1-D and 2-D inversion techniques. High-resolution 2-D and 3-D multichannel seismic data have been collected in the same area. The electrical resistivity models show several zones of highly anomalous resistivities (〉50 Ωm) which correlate with high amplitude reflections located on top of narrow vertical gas conduits, indicating the coexistence of free gas and gas hydrates within the hydrate stability zone. Away from the seeps the CSEM models show normal background resistivities between ~1 and 2 Ωm. Archie's law has been applied to estimate gas/gas hydrate saturations below the seeps. At intermediate depths between 50 and 200 m below seafloor, saturations are between 40 and 80% and gas hydrate may be the dominating pore filling constituent. At shallow depths from 10 m to the seafloor, free gas dominates as seismic data and gas plumes suggest.
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  • 97
    Publication Date: 2020-02-06
    Description: Many species of Indo-Pacific holobenthic foraminifera have been introduced and successfully established sustainable populations in the Mediterranean Sea over the past few decades. However, known natural and anthropogenic vectors do not explain how these species were introduced long distances from their origin. We present evidence for a novel marine bioinvasion vector explaining this long-distance transport and introduction using both contemporary field and historical analyses. In 2015–2016, we found living specimens of 29 foraminiferal species in the fecal pellets of two Red Sea herbivorous rabbitfish—Siganus rivulatus and Siganus luridus in the Mediterranean. In our historical analysis, we found 34 foraminiferal species in preserved Red Sea rabbitfish specimens, dating between 1967 and 1975. In addition, we found congruent propagation patterns of the non-indigenous rabbitfish and foraminifera, lagging 4–11 yrs between discoveries, respectively. Predation of marine benthos by non-indigenous fish, followed by incomplete digestion and defecation of viable individuals, comprise the main introduction vector of these organisms into novel environments.
    Type: Article , PeerReviewed
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  • 98
    Publication Date: 2020-02-06
    Description: Gel particles—a class of abundant transparent organic particles—have increasingly gathered attention in marine research. Field studies on the bacterial colonization of marine gels however are still scarce. So far, most studies on respective particles have focused on the upper ocean, while little is known on their occurrence in the deep sea. Here, we report on the vertical distribution of the two most common gel particle types, which are polysaccharide-containing transparent exopolymer particles (TEP) and proteinaceous Coomassie stainable particles (CSP), as well as numbers of bacteria attached to gel particles throughout the water column, from the surface ocean down to the bathypelagial (〈 3,000 m). Our study was conducted in the Arctic Fram Strait during northern hemispheres' summer in 2015. Besides data on the bacterial colonization of the two gel particle types (TEP and CSP), we present bacterial densities on different gel particle size classes according to 12 different sampling depths at four sampling locations. Gel particles were frequently abundant at all sampled depths, and their concentrations decreased from the euphotic zone to the dark ocean. They were colonized by bacteria at all sampled water depths with risen importance at the deepest water layers, where fractions of bacteria attached to gel particles (%) increased within the total bacterial community. Due to the omnipresent bacterial colonization of gel particles at all sampled depths in our study, we presume that euphotic production of this type of organic matter may affect microbial species distribution within the whole water column in the Fram Strait, down to the deep sea. Our results raise the question if changes in the bacterial community composition and functioning on gel particles occur over depth, which may affect microbial respiration and remineralization rates of respective particles in different water layers.
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  • 99
    Publication Date: 2017-12-14
    Description: In a recent letter, Thomsen and Wernberg (2015) reanalyzed data compiled for our recent paper (Lyons et al. 2014). In that paper, we examined the effects of macroalgal blooms and macroalgal mats on seven important measures of community structure and ecosystem functioning, and explored several ecological and methodological factors that might explain some of the variation in the observed effects. Thomsen and Wernberg (2015) reanalyzed two small subsets of the data, focusing on experimental studies examining effects of blooms/mats on invertebrate abundance. Their analyses revealed two interesting patterns.
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  • 100
    Publication Date: 2020-02-06
    Description: Biological invasions are worldwide phenomena that have reached alarming levels among aquatic species. There are key challenges to understand the factors behind invasion propensity of non-native populations in invasion biology. Interestingly, interpretations cannot be expanded to higher taxonomic levels due to the fact that in the same genus, there are species that are notorious invaders and those that never spread outside their native range. Such variation in invasion propensity offers the possibility to explore, at fine-scale taxonomic level, the existence of specific characteristics that might predict the variability in invasion success. In this work, we explored this possibility from a molecular perspective. The objective was to provide a better understanding of the genetic diversity distribution in the native range of species that exhibit contrasting invasive propensities. For this purpose, we used a total of 784 sequences of the cytochrome c oxidase subunit I of mitochondrial DNA (mtDNA-COI) collected from seven Gammaroidea, a superfamily of Amphipoda that includes species that are both successful invaders (Gammarus tigrinus, Pontogammarus maeoticus, and Obesogammarus crassus) and strictly restricted to their native regions (Gammarus locusta, Gammarus salinus, Gammarus zaddachi, and Gammarus oceanicus). Despite that genetic diversity did not differ between invasive and non-invasive species, we observed that populations of non-invasive species showed a higher degree of genetic differentiation. Furthermore, we found that both geographic and evolutionary distances might explain genetic differentiation in both non-native and native ranges. This suggests that the lack of population genetic structure may facilitate the distribution of mutations that despite arising in the native range may be beneficial in invasive ranges. The fact that evolutionary distances explained genetic differentiation more often than geographic distances points toward that deep lineage divergence holds an important role in the distribution of neutral genetic diversity.
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