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  • Articles  (1,524)
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  • 101
    ISSN: 1573-6857
    Keywords: D. melanogaster ; evolution ; frameshifting ; retrotransposon
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Earlier related to parasitic elements, retrotransposons of eukaryotes have been demonstrated to participate in general cell processes such as chromosome repair and evolution of gene expression (Teng et al., 1996; McDonald, 1993). Here, we report the existence of two class of genomic copies of retrotransposon 1731 with different expression strategies, one of which might be driven by natural selection. The first class uses conventional translation frameshifting known to ensure expression of revere transcriptase (RT) open reading frame (ORF), depending on the efficiency of frameshifting. The bulk of genomic copies are related to the second class where the frameshift is prevented as a result of the substitution of a rare codon recoginsing rare tRNA by a codon preferred by host genome, whereas the RT ORF is restored by downstream single nuclotide deletion. We suggest that natural selection has driven the switching of 1731 expression strategy from retrovirus-like to the fussion-ORF expression. This observation is in accordance with the detection in testes of fused Gag-RT polypetide encoded by 1731. The abundance of RT in testes may serve for normal development of host tissue.
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  • 102
    ISSN: 1573-9104
    Keywords: Bioavailability ; Magnesium ; Hijiki ; Sodium alginate ; Rat ; Wakame
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The bioavailability of magnesium from Wakame and Hijiki, and the effects of alginic acid on absorption of dietary magnesium were examined in five groups of rats fed either control, Wakame, Hijiki, AW (containing the same amount of alginate as in the Wakame) and AH (containing the same amount of alginate as in the Hijiki) diets, and animals fed a low magnesium diet (LMg) (twentieth amount of magnesium in the original mineral mixtures as the control). Food intake and body weight gain were decreased by adding sodium alginate to the diets. A large amount of calcium accumulated only in the kidneys of the rats fed the LMg diet. Serum magnesium concentration decreased only in the LMg group. The magnesium content in the defatted left femurs did not differ between the control and Wakame fed animals and also among the animals eating Wakame, Hijiki and AW diets. The breaking force of the right femurs did not differ among all the groups except the LMg group. The ratio of apparent magnesium absorption (%) of the control, LMg, Wakame, Hijiki, AW and AH groups was 82.2, 72.7, 66.9, 50.8, 69.3 and 54.2 in the first experimental period, and was 75.3, 52.1, 57.7, 46.9, 62.6 and 60.5 in the second experimental period, respectively. It was clear that the bioavailability of magnesium in the Wakame fed rats was higher than in those eating the Hijiki. Large amounts of sodium alginate lowered magnesium absorption from the diet.
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  • 103
    ISSN: 1615-6110
    Keywords: Fabaceae ; Medicago ; Systematics ; evolution ; allozymes ; isozymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Medicago intertexta andM. ciliaris have been controversially recognized as separate species. The only reliable diagnostic character, gland-tipped trichomes on the fruits inM. ciliaris, is controlled by presence of a single dominant allele, and such one-character taxonomies are debatable. Contributing to the difficulty,M. muricoleptis andM. granadensis, the other two species ofMedicago sectionSpirocarpos subsectionIntertextae, are sometimes confusingly similar toM. intertexta or to each other. Allozyme differences provided 95% verification of the suitability of the gland-tipped trichome character for separatingM. intertexta andM. ciliaris, thus corroborating their recognition as separate taxa. Several measures of allozyme variation indicated thatM. intertexta is more polymorphic than its sister species. Heterozygosity was also highest inM. intertexta, suggestive of a higher outcrossing rate, which is also consistent with larger floral size. Heterozygosity ofM. intertexta was concentrated in Sicily and nearby countries. Taxonomic difficulties in identifying SicilianM. intertexta are well known, and may be the result of interspecific hybridization and introgression.Medicago muricoleptis differed from the above two species in the frequency of several alleles, whileM. granadensis possessed numerous unique alleles consistent with its complete absence of genetic exchange with the other three substantially interfertile species.
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  • 104
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    Plant systematics and evolution 214 (1999), S. 187-198 
    ISSN: 1615-6110
    Keywords: Malvales ; Sterculiaceae ; Tiliaceae ; Bombacaceae ; Malvaceae ; Inflorescence morphology ; epicalyx ; systematics ; homology ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A broad comparative analysis reveals that the inflorescences of coreMalvales, familiesSterculiaceae, Tiliaceae, Bombacaceae andMalvaceae, include characteristic repeating units. The basic repeating unit is called bicolor unit (afterTheobroma bicolor, where it was first observed). It is determinate and bears three bracts, one of which is invariably sterile, whereas the others subtend lateral cymes or single flowers. Through the demonstration of intermediate steps in closely related taxa the triad of bracts within a bicolor unit and the trimerous malvalean epicalyx are shown to be homologous. Various possibilities for an origin of the bicolor unit are discussed. Bicolor units are variously arranged to form complete inflorescences. In many taxa they are terminal on modules that comprise two (or fewer) prophylls. These modules may be arranged in elongated anthocladia or condensed sympodia, which in turn may constitute components of higher order inflorescence structures. The presence of the bicolor unit or its derivatives linksSterculiaceae, Tiliaceae, Bombacaceae andMalvaceae. It is absent from all other families included in a broader defined orderMalvales and represents one of the rare morphological synapomorphies of coreMalvales. Furthermore, inflorescence morphology provides characters of systematic significance for various taxa within coreMalvales.
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  • 105
    ISSN: 1615-6110
    Keywords: Salicaceae ; Salix alba ; S. fragilis ; Allozymes ; clones ; population structure ; hybridization ; polyploidy ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Genetic variability was estimated by enzyme electrophoresis in 239 Belgian clones from theSalix alba-S. fragilis complex. This morphological complex suggested a high frequency of hybrids. To test this hypothesis, the clones were pooled as a single co-adapted species complex and secondly as belonging to either species, i.e. beingS. alba-like orS. fragilis-like. The standard genetic variability measures showed higher values for the complex than for the separate species. However, the observed mean heterozygosity was lower in the putative hybrid complex than for each of the species separately. The fixation indices were more variable at the species level and indicated that mostS. fragilis locations appeared fixed forlap-1, whereas no fixation occured inS. alba locations. Averaged at the regional (i.e. catchment) level, this difference between the two species remained and values ranged from 0.457 to 0.617 inS. alba and were much higher, fixed homozygous or monomorph inS. fragilis. Hierarchical F-statistics revealed that most of the differentiation occured at the lower levels of localities and tributaries and that there was no further differentiation between catchments. Tributaries which are 10–25km in length were proposed as the most likely entities for further examination of putative hybridization and events of allelic fixations. By considering the two abovementioned approaches of data input, it could be suggested that most of the allozyme differentiation was between the species and less between the regions.
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  • 106
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    Plant systematics and evolution 218 (1999), S. 43-54 
    ISSN: 1615-6110
    Keywords: Fabaceae ; Phaseolus ; Phaseolus lunatus ; Taxonomy ; germplasm ; evolution ; origin ; allozyme ; Latin America
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract An investigation was made of the phylogenetic relationships among wild accessions of Lima bean (Phaseolus lunatus) and wild allies of Mesoamerican and Andean origins, using electrophoresis of seed storage proteins and isozymes. Mesoamerican wild species are phylogenetically more distant fromP. lunatus than Andean species, and apparently belong to the tertiary gene pool of Lima bean. The Andean wild species, which are investigated for the first time, reveal a high similarity to the Lima bean, and particularly with its Mesoamerican gene pool. These Andean species probably constitute a secondary gene pool of Lima bean, and are thus of considerable interest in the context of genetic improvement of the crop. Based on these observations, an Andean origin is suggested for the Andean wild species and forP. lunatus. These results point out the importance of collecting and conserving AndeanPhaseolus germplasm.
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  • 107
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    Plant systematics and evolution 217 (1999), S. 279-297 
    ISSN: 1615-6110
    Keywords: Arecaceae ; Phytelephantoideae ; Aleocharinae ; Baridinae ; Derelomini ; Mystrops ; Xanthopygus ; Brood-site pollination ; dioecy ; evolution ; floral scents ; flower-breeding ; pollination ; thermogenesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The subfamilyPhytelephantoideae comprises three genera (Ammandra, Aphandra, andPhytelephas) and seven species of dioecious palms. The floral scents ofAmmandra dasyneura, A. decasperma, Aphandra natalia, Phytelephas aequatorialis, P. macrocarpa, andP. seemannii were analyzed by gas chromatography-mass spectrometry. We studied the pollination biology ofA. natalia, P. aequatorialis, andP. macrocarpa, and tested how the synthetically produced main constituents of the floral scents ofAphandra andPhytelephas attracted insects in two natural populations ofPhytelephas. The genera are distinct in terms of floral scents.Ammandra has sesquiterpenes,Aphandra (+)-2-methoxy-3-sec-butylpyrazine, andPhytelephas p-methyl anisol. These constituents dominated the scents quantitatively and qualitatively. The similarity between scents of male and female inflorescences was 76.5% inAmmandra, 84.2% inAphandra, and 〉99% inPhytelephas. Different species ofAleocharinae (Staphylinidae) pollinateAphandra natalia andPhytelephas species and reproduce in their male inflorescences.Derelomini (Curculinoidae) andMystrops (Nitidulidae) only visit and pollinatePhytelephas in which male inflorescences they reproduce. A species ofBaridinae (Curculionidae) only visits and pollinatesAphandra natalia, and reproduces in its female inflorescence. The apparent reliance on one or a few floral scent constituents as attractants and few and specific pollinators may indicate co-evolution. Sympatric species ofPhytelephantoideae have different scents. We suggest that species with similar scents have allopatric distributions due to the absence of a pollinator isolation mechanism.
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  • 108
    ISSN: 1615-6110
    Keywords: Asteraceae ; Brachycome ; B chromosome ; polymorphism ; evolution ; karyotyping ; centromere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The A and B chromosomes of different karyotype variants (cytodemes A1, A2, A3 and A4) ofBrachycome dichromosomatica were analysed by computer-aided chromosome image analysis and fluorescencein situ hybridisation (FISH). Ribosomal DNA and the B chromosome-specific sequence Bd49 were detected on all B chromosomes. In addition to minor size variation of the Bs, polymorphism of the rDNA and Bd49 position and copy number revealed two major types of B chromosomes. The B chromosomes of all the cytodemes were indistinguishable from each other in length, but that of A3 showed evidence of rearrangements consistent with its long-term geographic isolation. The results presented suggest a monophyletic origin of the B chromosomes ofB. dichromosomatica.
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  • 109
    ISSN: 1615-6110
    Keywords: Hymenophyllopsis ; Lophosoria ; molecular systematics ; evolution ; rbcL ; phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Nucleotide sequences fromrbcL were used to infer relationships of Lophosoriaceae and Hymenophyllopsidaceae. The phylogenetic positions of these two monotypic fern families have been debated, and neither group had been included in recent molecular systematic studies of ferns. Maximum parsimony analysis of our data supported a sister relationship betweenLophosoria andDicksonia, and also betweenHymenophyllopsis andCyathea. Thus, both newly-examined families appear to be part of a previously characterized and well-supported clade of tree ferns. The inferred relationships ofLophosoria are consistent with most (but not all) recent treatments. However,Hymenophyllopsis includes only small delicate plants superficially similar to filmy ferns (Hymenophyllaceae), very different from the large arborescent taxa. Nevertheless, some synapomorphic characteristics are shared with the tree fern clade. Further studies on gametophytes ofHymenophyllopsis are needed to test these hypotheses of relationship.
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  • 110
    ISSN: 1573-5028
    Keywords: cysteine positions ; evolution ; gene duplication ; glucose-6-phosphate dehydrogenase ; isoform classes ; redox regulation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In a recent paper (Wenderoth et al., J Biol Chem 272: 26985–26990, 1997) we reported that the positions of the two redox regulatory cysteines identified in a plastidic G6PD isoform from potato (Solanum tuberosum L.) differ substantially from those conserved in cyanobacterial G6PDH sequences. To investigate the origin of redox regulation in G6PDH enzymes from photoautotrophic organisms, we isolated and characterized several G6PD cDNA sequences from higher plants and from a green and a red alga. Alignments of the deduced amino acid sequences showed that the cysteine residues cluster in the coenzyme-binding domain of the plastidic isoforms and are conserved at three out of six positions. Comparison of the mature proteins and the signal peptides revealed that two different plastidic G6PDH classes (P1 and P2) evolved from a common ancestral gene. The two algal sequences branch off prior to this class separation in higher plants, sharing about similar amino acid identity with either of the two plastidic G6PDH classes. The genes for cytosolic plant isoforms clearly share a common ancestor with animal and fungal G6PDH homologues, whereas the cyanobacterial isoforms branch within the eubacterial G6PDH sequences. The data suggest that cysteine-mediated redox regulation arose independently in G6PDH isoenzymes of eubacterial and eukaryotic lineages.
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  • 111
    ISSN: 1573-5109
    Keywords: evolution ; genetic resources ; PCR-RFLP ; RAPDs ; Vicia ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We report the results of two methods of DNA analysis to elucidate phylogenetic relationships among 29 Vicia subgen. Vicia species in comparison with two species of subgenus Vicilla sect. Vicilla. The methods employed were RAPD analysis of total genomic DNA and PCR-RFLP analysis of five chloroplast genes, rbcL, rpoB, 16S, psaA and trnK. The results of each method were similar and complementary, and support the current taxonomic systems of subsp. Vicia. According to RAPD and PCR-RFLP analysis the Narbonensis complex can be considered a well separated section, which may be related to section Vicia. Sections Vicia, Atossa and Wiggersia are separate, but closely related sections. Species of the section Hypechusa form a single monophyletic section, where V. lutea, V. anatolica and V. hyrcanica are quite remote from other species. Our results suggest that within the subgenus Vicia, V. faba is more closely related to V. bithynica and that these two species are most closely related to section Peregrinae. We found that PCR-RFLP of cp DNA provided more precise information concerning relationships between Vicia sections than RAPD analysis. However, RAPD analysis was more informative concerning diversity of closely related Vicia taxa, such as the variable groups, section Narbonensis and V. sativa aggregate.
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  • 112
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    Genetic resources and crop evolution 46 (1999), S. 501-504 
    ISSN: 1573-5109
    Keywords: cytogenetics ; evolution ; interspecific hybrids ; oat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The newly discovered tetraploid oat Avena insularis was crossed with the diploid A. strigosa and the tetraploid A. murphyi. Considerably reduced chromosome association at meiosis and a low average number of chiasmata per cell of the A. strigosa × A. insularis hybrids indicated that the diploid A. strigosa did not participate in the creation of A. insularis. From A. murphyi, A. insularis differed by four chromosomal rearrangements and the hybrids between them were sterile. The tetraploids A. magna, A. murphyi and A. insularis share the two to four floret large diaspore, which is adapted to heavy alluvial soil. They all, however, diverge from one another by four chromosomal rearrangements. At this point it is not possible to determine whether they have diverged from a single tetraploid progenitor, or developed from different diploid species.
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  • 113
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    Hydrobiologia 402 (1999), S. 255-265 
    ISSN: 1573-5117
    Keywords: evolution ; spiral cleavage ; Spiralia ; cell lineage
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract It is clear that the spiralian developmental program represents a highly flexible platform for the generation of diverse larval and adult body plans. The widespread occurrence of this pattern of early development attests to its tremendous evolutionary success. Despite the large degree of conservation in the spiral cleavage pattern and other basic aspects of early development, changes in cell fate maps and in the mechanisms of blastomere specification have arisen. While we have learned a great deal about this mode of development, a number of important questions remain to be answered. To what extent do these conditions apply to the lesser studied spiralian phyla? What constraints have led to the preservation of the early spiral cleavage program? How has this developmental program been adapted for the construction of the various spiralian body plans (e.g. the segmental body plans of annelids or to the potential secondary loss of segmentation)? Are most changes associated with the elaboration of these different larval and adult body plans restricted to the late period of development? What molecular/genetic processes underlie this developmental program? Clearly, the spiralian phyla represent an important group of organisms for further studies on development and evolution.
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  • 114
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    Hydrobiologia 406 (1999), S. 281-290 
    ISSN: 1573-5117
    Keywords: evolution ; Branchiobdellida ; Hirudinea ; Clitellata ; Lumbriculidae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The debates about the relationship among clitellate taxa at research conferences on aquatic oligochaetes have provided two alternative hypotheses. While both involve cladistic analyses, the differences focus on questions of homology. A single unique synapomorphy supports a taxon consisting of Branchiobdellida plus Lumbriculidae. Muscle ultrastructure provides a potential autapomophy for Lumbriculidae within the clade, while Branchiobdellida has many autapomophies. Some proposed synapomorphies for a Branchiobdellida plus Hirudinea grouping (jaws, oral sucker) are not based on homologous structures. Others (loss of chaetae, median male pore) are not unique, or are based on potentially convergent characters. Initial molecular analyses support a Branchiobdellida - Hirudinea grouping. A preliminary manually drawn cladogram based on re-evaluated characters supports Lumbriculidae, Branchiobdellida, Acanthobdella and Euhirudinea as a monophyletic taxon. Observations on sperm ultrastructure support this hypothesis. If substantiated, a very considerable change in nomenclature will result. However, before any nomenclatural changes are proposed, a resolution of the apparently paraphyletic Oligochaeta is necessary.
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  • 115
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    Environmental biology of fishes 56 (1999), S. 17-38 
    ISSN: 1573-5133
    Keywords: embryo ; larva ; metamorphosis ; indirect or direct development ; life-history model ; altricial ; precocial ; allometry ; fish biologists vs. fishery biologists ; alprehost ; ontogeny ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Lack of knowledge of early and juvenile development often makes it difficult to decide when a fish becomes a juvenile or, for that matter, a definitive phenotype. According to the established life-history model, a fish develops naturally in a saltatory manner, its entire life consisting of a sequence of stabilized self-organizing steps, separated by distinct less stabilized thresholds. Changes are usually introduced during thresholds. In principle, there are two ways to reach the juvenile period: by indirect or by direct development. Indirectly developing fishes have a distinct larva period that ends in a cataclysmic or mild remodeling process, called metamorphosis, from which the fishes emerge as juveniles. During metamorphosis, most temporary organs and structures of the embryos and larvae are replaced by definitive organs and structures that are also possessed by the adults. In contrast, directly developing fishes have no larvae. Their embryos develop directly into juveniles and do not need major remodeling. Consequently, the beginning of their juvenile period is morphologically and functionally less distinct than in indirect development. The life-history model helps to find criteria that identify the natural boundaries between the different periods in the life of a fish, among them, the beginning of the juvenile period. Looking at it from a different angle, when ontogeny progresses from small eggs with little yolk, larvae are required as the necessary providers of additional nutrients (‘feeding entities’ similar to amphibian tadpoles or butterfly caterpillars) in order to accumulate materials for the metamorphosis into the definitive phenotypes. Directly developing fishes start with large demersal eggs provided with an adequate volume of high density yolk and so require no or little external nutrients to develop into the definitive phenotype. These large eggs are released and develop in concentrated clutches. It therefore becomes possible and highly effective to guard them in nests or bear them in external pouches, gill chambers or the buccal cavity. Viviparity is the next natural step. Now the maternal investment into large yolks can be supplemented or replaced by direct food supply to the developing embryos like, for example, the secretion of uterine histotrophe or nutrient transfer via placental analogues. When the young of guarders and bearers start exogenous feeding, they are much larger or better developed than larvae of nonguarders and the larva period in the former is reduced to a vestige or eliminated entirely. In the latter case, the juvenile period begins with the first exogenous feeding. Such precocial fishes are more specialized and able to survive better in competitive environments. In contrast, altricial forms retain or revert to a life-history style with indirect development and high fecundity when dispersal is advantageous or essential. Fishes become juveniles when the definitive phenotype is formed in most structures, either indirectly from a larva via metamorphosis or directly from the embryo.
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  • 116
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    Hydrobiologia 412 (1999), S. 191-212 
    ISSN: 1573-5117
    Keywords: Branchiopoda ; paleontology ; phylogeny ; evolution ; classification
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We present a cladistic analysis of all branchiopod groups, using a total of 42 morphological characters. The class Branchiopoda is composed of five superorders and 11 orders (nine recent, two fossil). The orders Ctenopoda, Anomopoda and Onychopoda form a monophyletic group, combined in the superorder Cladocera. The order Haplopoda, the fourth so-called cladoceran order (s. lat.), belongs to a new monotypic superorder, the Leptodorida. The circumtropical Cyclesteria hislopi is the sole representative of a new conchostracan order, the Cyclestherida.
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  • 117
    ISSN: 1573-6849
    Keywords: chromosome painting ; evolution ; karyotype ; marsupials
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A 2n = 14 karyotype is shared by some species in each of the marsupial orders in Australian and American superfamilies, suggesting that the ancestral marsupial chromosome complement was 2n = 14. We have used chromosome painting between distantly related marsupial species to discover whether genome arrangements in 2n = 14 species in two Australian orders support this hypothesis. Cross-species chromosome painting was used to investigate chromosome rearrangements between a macropodid species Macropus eugenii (2n = 16) and a wombat species in a different suborder (Lasiorhinus latifrons, 2n = 14), and a dasyurid species in a different order (Sminthopsis macroura, 2n = 14). We demonstrate that many chromosome regions are conserved between all three species, and deduce how the similar 2n = 14 karyotypes of species in the two orders are related to a common ancestral 2n = 14 karyotype.
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  • 118
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    Genetica 107 (1999), S. 15-25 
    ISSN: 1573-6857
    Keywords: DDE signature ; env ; evolution ; gag ; transposable elements
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The evolution of transposable element structures can be analyzed in populations and species and by comparing the functional domains in the main classes of elements. We begin with a synthesis of what we know about the evolution of the mariner elements in the Drosophilidae family in terms of populations and species. We suggest that internal deletion does not occur at random, but appears to frequently occur between short internal repeats. We compared the functional domains of the DNA and/or amino acid sequences to detect similarities between the main classes of elements. This included the gag, reverse transcriptase, and envelope genes of retrotransposons and retroviruses, and the integrases of retrotransposons and retroviruses, and transposases of class II elements. We find that each domain can have its own evolutionary history. Thus, the evolution of transposable elements can be seen to be modular.
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  • 119
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    Journal of bioenergetics and biomembranes 31 (1999), S. 15-27 
    ISSN: 1573-6881
    Keywords: archaea ; methanogens ; bioenergetics ; ATPases ; ATP synthases ; evolution ; proteolipids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Physics
    Notes: Abstract Recent molecular studies revealed nine to ten gene products involved infunction/assembly of the methanoarchaeal ATPase and unravel a closerelationship of the A1A0-ATPase and theV1V0-ATPase with respect to subunit composition and thestructure of individual subunits. Most interestingly, there is anastonishing variability in the size of the proteolipids in methanoar chaealA1A0-ATPases with six, four, or two transmembranehelices and a variable number of conserved protonizable groups per monomer.Despite the structural similarities the A1A0-ATPasediffers fundamentally from the V1V0-ATPase by itsability to synthesize ATP, a feature shared withF1F0-ATPases. The discovery of duplicated andtriplicated versions of the proteolipid in A1A0-ATPsynthases questions older views of the structural requirements for ATPsynthases versus ATP hydrolases and sheds new light on the evolutionof these secondary energy converters.
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  • 120
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    Genetica 107 (1999), S. 209-238 
    ISSN: 1573-6857
    Keywords: evolution ; genomic symbionts ; host defense ; impact on genomes ; retronuons ; reverse transcription ; template switching
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Retroposition is an efficient route to move coding regions around the genome ‘in search’ of novel regulatory elements and to shotgun regulatory elements into the genome ‘in search’ of new target genes. The templates for such retrogenes are mRNAs, and for regulatory retronuons (nuon=any definable nucleic acid sequence) usually small non-mRNAs. An example in support of the ‘master gene’ model for SINEs (short interspersed repetive elements) is provided with neuronal BC1 RNA. Furthermore, an alternative explanation of LINE (long interspersed repetive elements) involvement in the generation of SINEs is given. I will also argue that the status of transposable elements with respect to the host resembles more symbiosis than parasitiasis and that host defense is often lenient as if even to ‘tolerate or support’ retronuons. Finally the paradox of evolution's lack of foresight and the future exaptive use of retronuons is being dealt with by referring to W.F. Doolittle's ‘Hierarchical Approaches to Genome Evolution’.
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  • 121
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    Journal of mammalian evolution 6 (1999), S. 129-159 
    ISSN: 1573-7055
    Keywords: acoustic communication ; cats ; evolution ; Felidae ; vocalization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The distribution of the three friendly close-range vocalization types known in the Felidae was plotted on a recently published phylogeny of the cat family (Felidae) based on sequence comparisons of two mitochondrial DNA genes and other molecular and biochemical characters, with extrapolated divergence ages of its various lineages. It was found to be congruent with this phylogeny. One of the sound types is likely to be present in 30 species of the family (documented in 22 so far), another is present in 4, and the third in 2 species only; these sound types represent a phylogenetic transformation series. The latter two vocalization types also differ considerably from the first in the mode of sound production. From this, evolutionary conservatism over a long epoch for the one widespread vocalization type can be inferred, and less conservatism in the type present in four species, while the emergence of the least common type is evidence of relatively considerable and rapid evolutionary change. Thus, acoustic communication signals in a group of taxa can evolve at considerably different rates, and for a specific character this rate can differ between different lineages of that group. The ultimate causes of the evolutionary stability or of the subsequent relatively rapid change in sound structure and mode of sound production in these felid vocalizations are unknown.
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  • 122
    ISSN: 1573-6857
    Keywords: Drosophila ; nasuta-albomicans ; complex ; cytoraces ; body size ; fertility ; ovariole number ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Our long range interracial hybridization experiments between a pair of cross fertile races, Drosophila nasuta (2n = 8) and D.albomicans (2n = 6) have resulted in the evolution of two new karyotypic strains under laboratory conditions, which are named as Cytorace 1 and Cytorace 2. These Cytoraces harbor chromosomes from both parents. Here, we compare the body size of the parental races and newly evolved Cytoraces and the relationship between the body size and fitness. Analysis reveals that the parental races have reduced fertility and are larger in body size than newly evolved Cytoraces. Thus, the newly evolved Cytoraces show reduced body size and better fitness in the course of their evolution.
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    Journal of computational neuroscience 7 (1999), S. 119-147 
    ISSN: 1573-6873
    Keywords: central pattern generators ; dynamical modules ; computational neuroethology ; walking ; biomechanics ; evolution ; dynamical systems theory
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science , Medicine , Physics
    Notes: Abstract Are there general principles for pattern generation? We examined this question by analyzing the operation of large populations of evolved model central pattern generators (CPGs) for walking. Three populations of model CPGs were evolved, containing three, four, or five neurons. We identified six general principles. First, locomotion performance increased with the number of interneurons. Second, the top 10 three-, four-, and five-neuron CPGs could be decomposed into dynamical modules, an abstract description developed in a companion article. Third, these dynamical modules were multistable: they could be switched between multiple stable output configurations. Fourth, the rhythmic pattern generated by a CPG could be understood as a closed chain of successive destabilizations of one dynamical module by another. A combinatorial analysis enumerated the possible dynamical modular structures. Fifth, one-dimensional modules were frequently observed and, in some cases, could be assigned specific functional roles. Finally, dynamic dynamical modules, in which the modular structure itself changed over one cycle, were frequently observed. The existence of these general principles despite significant variability in both patterns of connectivity and neural parameters was explained by degeneracy in the maps from neural parameters to neural dynamics to behavior to fitness. An analysis of the biomechanical properties of the model body was essential for relating neural activity to behavior. Our studies of evolved model circuits suggest that, in the absence of other constraints, there is no compelling reason to expect neural circuits to be functionally decomposable as the number of interneurons increase. Analyzing idealized model pattern generators may be an effective methodology for gaining insights into the operation of biological pattern generators.
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    Journal of ornithology 140 (1999), S. 393-417 
    ISSN: 1439-0361
    Keywords: Orientation system ; compass mechanisms ; mosaic map ; navigational map ; migration program ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Description / Table of Contents: Zusammenfassung Ein erster Versuch von Bellrose, die Evolution des Orientierungssystems der Vögel zu beschreiben, ging von der Annahme aus, Kompaßorientierung und die Fähigkeit zur Navigation habe sich im Zusammenhang mit dem Vogelzug entwickelt. Kompaßmechanismen sowie die Mosaik- und die Navigationskarte spielen jedoch bereits bei der Orientierung im Heimbereich entscheidende Rollen, müssen sich also dort entwickelt haben unter dem Selektionsdruck, die täglichen Flugwege zu optimieren, vielleicht schon bei den Vorfahren der Vögel. Magnetkompaßorientierung erscheint als der einfachste Orientierungsmechanismus und müßte deshalb an den ältesten Orientierungsstrategien beteiligt gewesen sein. Ein Magnetkompaß ist bei Wirbeltieren weit verbreitet, doch gibt es Hinweise auf unterschiedliche Funktionsprinzipien. Es ist deshalb offen, ob die Vögel ihn von ihren Vorfahren übernommen oder eigenständig entwickelt haben. Das gleiche gilt für den Sonnenkompaß. Die entscheidende Rolle des Magnetkompaß bei der ontogenetischen Entwicklung des Sonnenkompaß läßt eine ähnliche Beziehung bei der phylogenetischen Entwicklung vermuten. Über kurze Entfernungen kann man sich Orientierung durch Wegumkehr allein mit Kompaßmechanismen vorstellen, wobei Umwege integriert werden müssen. Bei dieser Strategie akkumulieren sich jedoch die Fehler; die bei größeren Entfernungen resultierende Ungenauigkeit erzeugte einen Selektionsdruck, der das Benutzen von Ortsinformation begünstigte. Dies führte zur Entstehung der Mosaikkarte, die auf Kompaßorientierung und Landmarken beruht. Sie ist heute als eigenständiger Mechanismus anzusehen, der nach angeborenen Regeln aufgebaut wird. Die Navigationskarte entsteht, indem die gleichen Regeln auf Faktoren mit Gradienten-Charakter angewandt werden; sie hat sich offenbar aus der Mosaikkarte entwickelt. Ob sie eine Sonderentwicklung der Vögel infolge ihrer Flugfähigkeit ist, muß offen bleiben. Da die Vögel die Grundelemente ihres Orientierungssystems wahrscheinlich von ihren Vorfahren übernommen haben, würden wir erwarten, daß diese Mechanismen bei allen Vögel gleich sind bzw. nach den gleichen Regeln erstellt werden. Vorstufen des Vogelzugs waren zunächst ungerichtete Flüge auf der Suche nach günstigeren Bedingungen; in diesem Stadium reichten die vorhandenen Navigationsmechanismen zur Orientierung zwischen den verschiedenen Gebieten aus. Als aus diesen ersten Ortsbewegungen ein regelmäßiger Zug zwischen zwei Regionen wurde, begann sich das Zugprogramm zu entwickeln, wobei sich zunächst eine spontane Richtungstendenz herausbildete. Der Magnetkompaß konnte als erstes Referenzsystem für diese Zugrichtung dienen. Später erhielt die Himmelsrotation ihre entscheidende Bedeutung, wobei die Vögel die Referenzrichtung Süd zunächst aus dem Polarisationsmuster am Tage ableiteten. Im Laufe der Zeit entstanden die differenzierten Zugprogramme mit Richtungsfolgen, steuernden Zeitprogrammen und Triggermechanismen. Die Zugrichtung und Länge der Zugstrecke unterliegen auch weiterhin einer ständigen Selektion, die für optimale Anpassung an die jeweiligen Umweltbedingungen sorgt. Der Übergang vom Tag- zum Nachtzug bereitete keine Probleme, denn die Vögel mußten zunächst keine neuen Orientierungsmechanismen entwickeln, da sich der Magnetkompaß zu jeder Tageszeit einsetzen läßt. Später entstand der Sternkompaß, der in seinen Funktionseigenschaften hervorragend auf die Bedürfnisse von Zugvögeln angepaßt ist und als eigenständige Entwicklung der Nachtzieher angesehen werden muß. Dazu erwarben die Nachtzieher die Fähigkeit, die Information der Himmelsrotation aus der Bewegung der Sterne abzuleiten und direkt auf den Sternkompaß zu übertragen. Da das Zugverhalten bei Vögeln mehrfach unabhängig voneinander entstanden ist, muß man Entsprechendes auch von den Mechanismen der Zugorientierung annehmen. Das bedeutet, daß sich die betreffenden Mechanismen bei den verschiedenen Arten unterschiedlich entwickelt haben könnten, doch ist mit konvergenten Entwicklungen zu rechnen.
    Notes: Summary In a first attempt to explain the evolution of the avian navigational system, Bellrose suggested that compass mechanisms and the ability for true navigation had developed in connection with migration across increasing distances. Yet birds use compasses, the mosaic and the navigational maps even close to home and for homing. This means that those mechanisms must have developed for orientation within the home range, with the necessity to optimize the everyday flights acting as selective pressure. In view of this, any attempt to reconstruct the evolution of the avian navigational system must start out with the non-flying ancestors of birds. Considering the requirements of orientation by landmarks and by using a compass, compass orientation with the help of the magnetic field appears to be the simplest mechanism; consequently, it must be assumed to belong to the most ancient orientation strategies. The magnetic compass is wide-spread among animals, but it appears to function according to different principles among the various groups of vertebrates so that it is unclear whether birds inherited their magnetic compass from their reptilian ancestors or developed a mechanism of their own. The same is true for the sun compass. The crucial role of the magnetic compass in the ontogenetic development of the sun compass might indicate a similar relationship for the phylogenetic development. Over short distances within the home range, orientation based solely on compass orientation appears possible, using the strategy of route reversal, with non-straight routes being integrated. Since this strategy accumulates errors, it becomes inaccurate over longer distances, thus causing selective pressure to use local site-specific information. This leads to the formation of the mosaic map, a mechanism that includes landmarks as well as compass orientation. Today, the mosaic map of landmarks is a mechanism by itself, established according to innate learning principles that associate information on path integration with site-specific information, thus forming a directionally oriented mental representation of the distribution of landmarks. The navigational map is formed by applying the same principles to factors of the nature of gradients; it thus appears to have developed from the mosaic map. Whether or not it is a special development of birds associated with their flying ability is unclear. Because the birds probably inherited the basic mechanisms of orientation from their ancestors, one would expect these mechanisms to be similar in all birds. For the mechanisms involving learned components, this means that they are established following common rules. Birds improved those mechanisms and adapted them to their specific needs. Migration is assumed to have begun with non-directed search movements for regions offering better conditions. At this stage, the already existing mechanisms of homing were sufficient for navigation between the various areas. When these first movements turned into regular migration between two regions, the migratory program began to evolve, starting out with spontaneous tendencies in a preferred direction. The magnetic compass may have served as first reference system for the migratory direction; later, celestial rotation, indicated by the changing pattern of polarized light during the day, obtained its important role in indicating the reference direction geographic South. In the course of time, sophisticated migration programs with changes in direction, controlling time programs, responses to trigger mechanisms etc. developed. The migratory direction and distance, i.e. the amount of migratory activity, continue to be subject to selective pressure so that birds can respond to the environmental conditions in an optimal way. The transition from daytime migration to night migration did not require new mechanisms, as the magnetic compass can be used at any time of the day. Later, however, the star compass evolved, which is to be considered a special development of night-migrating birds, with its way of functioning well adapted to the specific needs of migrants. Birds also developed the ability to derive information on celestial rotation from the rotating stars at night and to transfer this information directly to the star compass. Since migratory habits evolved many times independently among birds, the same has to be assumed for the specific mechanisms of migratory orientation. This means that they need not necessarily be identical in all bird migrants. We are to expect convergent developments, however, leading to mechanisms of the most suitable type.
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    Experimental and applied acarology 23 (1999), S. 181-216 
    ISSN: 1572-9702
    Keywords: Microarthropods ; canalized ; evolution ; constraint ; reproductive biology ; spermatophore.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This study investigates how the course of evolutionary change of an organismal pattern is canalized by organismal properties. As an example we use the mechanisms of indirect sperm transfer of some microarthropod groups. Miniaturized droplet spermatophores, characterized by a rather similar pattern of structural and functional components, are shown to have evolved independently in the Acari–Actinotrichida and the Pseudoscorpiones within the Arachnida and in the Entognatha (Collembola and Diplura–Campodeoidea), Symphyla, Pauropoda and Pselaphognatha within the Antennata. At least in the phylogenetic lineages leading to the various antennatan groups, evolution of miniaturized spermatophores took place in a similar sequence of transformation steps. It is likely that – originally – large sac spermatophores with a rigid sheath were deposited on the ground. The subsequent sequence of evolution involved carrying structures, a viscous sheath of the spermatophore-droplets, a stable water balance of the spermatophore under habitat conditions and miniaturized spermatophore droplets with immobilized sperm cells. Finally, mate dissociation became a common mode of behaviour in all groups mentioned. Each of the transformation steps was not only an adaptation to a particular selective condition, but additionally a precondition for further adaptive innovation. In this way the sequence of evolutionary change was rigidly determined. Moreover, integration of subsequently evolved components of the spermatophores into a complex network of interacting components obviously caused constraints of interaction, which in turn have caused a remarkable evolutionary stability of the character patterns. Using water mites as an example, it is shown how in a changed environment few behavioural changes have initiated an evolutionary sequence which has finally led convergently in several lineages to semi-direct or direct sperm transfer and to a massive repatterning of the original reproduction pattern. © Rapid Science Ltd. 1998
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    Agroforestry systems 45 (1999), S. 23-41 
    ISSN: 1572-9680
    Keywords: agriculture ; evolution ; functional mimicry ; natural ecosystems ; sustainability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract This paper addresses the question of how much biodiversity is enough in the context of the concept of agriculture as a mimic of nature. Following an historical review of the likely origins of ecosystems I show that the currently accepted components of biodiversity, viz. genetic, species and ecosystem, and their functional expression, are relevant to agriculture. Examples of adequate biodiversity are given and it is concluded that what constitutes enough biodiversity in an agricultural system is dependent upon the goal in question and will be different depending on whether the aim is, for example, to increase yield stability or deal with salinity, ground water levels, soil erosion, leaching of nutrients or weed control. The point is made that ecosystems and their composition are contingent in nature so the history of events, their frequency and intensity all need to be considered when interpreting the natural biodiversity present and thus determining what is enough in particular circumstances.
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  • 127
    ISSN: 1573-0603
    Keywords: Dichloromethylene diphosphate ; Hepatic stellate cell isolation ; Liposome ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Hepatic perisinusoidal cell population consists of hepatic stellate cells, Kupffer cells, endothelial cells, and Pit cells. These cells are isolated by enzymic digestion and purified by density gradient centrifugation. With isolation of stellate cells, conventional method is unable to eliminate the contamination of Kupffer cells because the densities of these two cells are similar. We report here an improved method for isolation of highly purified hepatic stellate cells, using dichloromethylene diphosphate (CL2MDP), which has selective cytotoxicity of Kupffer cells. Three days after the single intravenous administration of liposome-encapsulated CL2MDP, the Kupffer cells disappeared almost completely from the liver. Following Percoll density gradient centrifugation, the purity of the hepatic stellate cells exceeded 98% without any contamination of the Kupffer cells. Kupffer cells are reported to affect the physiological functions of stellate cells. The availability of highly purified stellate cells will facilitate the investigation of their functions in primary culture.
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    Space science reviews 90 (1999), S. 169-178 
    ISSN: 1572-9672
    Keywords: Comets: structure ; composition ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract The initial structure of a comet nucleus is most probably a homogeneous, porous, fine-grained mixture of dust and ices, predominantly water. The water ice is presumably amorphous and includes considerable fractions of occluded gases. This structure undergoes significant changes during the early evolution of the nucleus at large heliocentric distances, due to internal radiogenic heating. Structural changes occur mainly as a result of gas flow through the porous medium: the gas pressure that builds up in the interior is capable of breaking the fragile structure and altering the pore sizes and porosity. These effects are modeled and followed numerically, testing a large number of parameters.
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  • 129
    ISSN: 1572-9699
    Keywords: β-lactam antibiotics ; biosynthetic genes ; clusters ; evolution ; chromosome resolution ; genome plasticity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genes pcbAB, pcbC and penDE encoding enzymes that catalyze the three steps of the penicillin biosynthesis have been cloned from Penicillium chrysogenum and Aspergillus nidulans. They are located in a cluster in Penicillium chrysogenum, Penicillium notatum, Aspergillus nidulans and Penicillium nalgiovense. The three genes are clustered in chromosome I (10.4 Mb) of P. chrysogenum, in chromosome II of P. notatum (9.6 Mb) and in chromosome VI (3.0 Mb) of A. nidulans. The cluster of the penicillin biosynthetic genes is amplified in strains with high level of antibiotic production. About five to six copies of the cluster are present in the AS-P-78 strain and 11 to 14 copies in the E1 strain (an industrial isolate), whereas only one copy is present in the wild type (NRRL 1951) strain and in the low producer Wis 54-1255 strain. The amplified region in strains AS-P-78 and E1 is arranged in tandem repeats of 106.5 or 57.6-kb units, respectively. In Acremonium chrysogenum the genes involved in cephalosporin biosynthesis are separated in at least two clusters. The pcbAB and pcbC genes are linked in the so-called ‘early cluster’ of genes involved in the cephalosporin biosynthesis. The ‘late cluster’, which includes the cefEF and cefG genes, is involved in the last steps of cephalosporin biosynthesis. The ‘early cluster’ was located in chromosome VII (4.6 Mb) in the C10 strain and the ‘late cluster’ in chromosome I (2.2 Mb). Both clusters are present in a single copy in the A. chrysogenum genome, in the wild-type and in the high cephalosporin-producing C10 strains.
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    Genetic resources and crop evolution 46 (1999), S. 219-224 
    ISSN: 1573-5109
    Keywords: Amaranthus ; evolution ; genome relationship ; structural chromosome changes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Meiotic studies were carried out in four accessions of three grain species, viz. Amaranthus cruentus, A. powellii and A. retroflexus and their F1 hybrids to elucidate the genome relationships between the cultivated and wild types and the cytogenetical mechanisms involved in speciation. All the three species were morphologically distinct and cytologically uniform with 17 bivalents at metaphase I. Morphologically the interspecific hybrids were either intermediate or had an overall dominance of wild parents. Chromosome analysis at meiotic metaphase I in the F1 interspecific hybrids of A. powellii with the Indian and Mexican accessions of A. cruentus showed an average of chromosome association of 1.0 IV + 0.10 III + 14.78 II + 0.14 I and 1.0 IV + 0.45 III + 14.20 II + 0.25 I and 5.81% in the former and 8.44% in the later pollen grain fertility, respectively and that of A. retroflexus with A. cruentus (Indian and Mexican) showed almost similar chromosomal associations. These studies show close genomic homology amongst all these three species involving certain chromosomal aberrations resulting in their evolution.
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    Plant and soil 212 (1999), S. 13-22 
    ISSN: 1573-5036
    Keywords: biomonitoring ; cp-scaling ; life history ; maturity index ; nematode ; evolution ; stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Nematodes are increasingly being used in environmental studies. One of the potential parameters to measure the impact of disturbances and to monitor changes in structure and functioning of the below-ground ecosystem is the nematode Maturity Index; an index based on the proportion of colonizers (r-strategists s.l.) and persisters (K-strategists s.l.) in samples. In this paper the original allocation of nematode taxa on the colonizer-persister scale, and the tolerance and sensitivity of colonizers and persisters are discussed from an evolutionary viewpoint. The phenomenon that neither relative egg size nor body length is an unequivocal character to scale nematodes suggests that the main selection for life history traits occurred independently in the major evolutionary branches.
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    Photosynthesis research 60 (1999), S. 29-42 
    ISSN: 1573-5079
    Keywords: enzyme catalysis ; evolution ; genetic engineering ; photosynthesis ; protein assembly ; protein degradation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco; EC 4.1.1.39) has played a central role in our understanding of chloroplast biogenesis and photosynthesis. In particular, its catalysis of the rate-limiting step of CO2 fixation, and the mutual competition of CO2 and O2 at the active site, makes Rubisco a prime focus for genetically engineering an increase in photosynthetic productivity. Although it remains difficult to manipulate the chloroplast-encoded large subunit and nuclear-encoded small subunit of crop plants, much has been learned about the structure/function relationships of Rubisco by expressing prokaryotic genes in Escherichia coli or by exploiting classical genetics and chloroplast transformation of the green alga Chlamydomonas reinhardtii. However, the complexity of chloroplast Rubisco in land plants cannot be completely addressed with the existing model organisms. Two subunits encoded in different genetic compartments have coevolved in the formation of the Rubisco holoenzyme, but the function of the small subunit remains largely unknown. The subunits are posttranslationally modified, assembled via a complex process, and degraded in regulated ways. There is also a second chloroplast protein, Rubisco activase, that is responsible for removing inhibitory molecules from the large-subunit active site. Many of these complex interactions and processes display species specificity. This means that attempts to engineer or discover a better Rubisco may be futile if one cannot transfer the better enzyme to a compatible host. We must frame the questions that address this problem of chloroplast-Rubisco complexity. We must work harder to find the answers.
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    Hydrobiologia 406 (1999), S. 243-251 
    ISSN: 1573-5117
    Keywords: anterior regeneration ; evolution ; fission ; asexual reproduction ; Naididae ; Annelida
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Agametic reproduction by fission has evolved numerous times in the Annelida. In this group, as well as others, the developmental processes of fission appear to be based on those of regeneration. Thus far, all fissiparous annelids whose regenerative abilities have been investigated fully are capable of regenerating both anteriorly and posteriorly. However, in this paper, I describe a unique exception to this association between fission and regenerative abilities. Regeneration experiments demonstrate that the fissiparous annelid Paranais litoralis (Oligochaeta: Naididae) has lost the capacity for full anterior regeneration. The four anterior segments of P. litoralis are produced routinely during each round of fission, yet this species is incapable of producing these same segments by anterior regeneration. I propose that fissiparous reproduction, possibly coupled with a low susceptibility to amputation in nature, may have relaxed selection for anterior regeneration in P. litoralis. The decoupling of fission and regenerative abilities suggests that some steps in the developmental trajectories that lead to fission and regeneration may have diverged in this species.
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    ISSN: 1573-5117
    Keywords: 18S rDNA ; biogeography ; Bryopsidales ; evolution ; Halimeda ; phylogeny ; Tethys ; vicariance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Partial 18S rDNA sequences, including a 102 base pair insertion, were used to infer a phylogeny among 48 samples across all sections in Halimeda Lamouroux, 1812. The phylogeny reveals a separation of the monophyletic section Rhipsalis into a western Atlantic and a western Pacific clade. Consequently, morphologically similar species within this section such as H. monile (Ellis & Solander) Lamouroux (western Atlantic), and H. cylindracea Decaisne (western Pacific), are not sister taxa. Vicariant events that separated the tropical regions of the Atlantic and Indo-Pacific Oceans can explain the observed biogeographical pattern in section Rhipsalis.
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    Hydrobiologia 402 (1999), S. 21-37 
    ISSN: 1573-5117
    Keywords: evolution ; Annelida ; nephridia ; ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In Annelida, nearly each segment contains a pair of ducts that either are protonephridia or metanephridia. These segmental organs function as excretory organs and, after having been modified, they may also act as gonoducts during maturity. In certain polychaetous annelids and especially in clitellates this function has been adopted by additional gonoducts which generally are formed at the begining of maturity. At the end of the last century the gonocoel theory tried to explain the relation between gonads, coelomic cavities and nephridia. Using the gonocoel theory axiomatically, Goodrich (1945) assumed that in annelids a pair of protonephridia and a pair of gonoducts represent the primary condition. Evolution of metanephridia on the one hand and the fusion of gonoducts and nephridia on the other hand occurred within the Annelida. Based on recent ultrastructural investigations into the development of different segmental organs, this paper re-evaluates Goodrich′s hypothesis. According to these data the segmental organs differentiate from a single anlage. Each consists of three or four cells which line a small lumen filled with microvilli. The duct becomes ciliated and the most proximal cells are separated when the coelom extends by fluid accumulation between the lining cells. During enlargement of the coelomic cavity the proximal part of the anlage is passively opened, so that the cilia face the coelom, to form the funnel. If separation of the proximal duct cells is suppressed, the anlage differentiates into a protonephridium, which secondarily may acquire a funnel during maturity by proliferation of proximal duct cells. Thus, different pathways in nephridial development lead to completely different segmental organs in the fertile adult. Additional gonoducts evolve in different lineages within the annelids.
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    ISSN: 1573-6849
    Keywords: Acomys ; CENP-B box ; evolution ; satellite DNA ; speciation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Satellite DNAs (stDNAs) of four Acomys species (spiny-mice), A. cahirinus, A. cineraceus, A. dimidiatus and A. russatus, belong to closely related sequence families. Monomer sizes range from 338 to 364 bp. Between-species sequence identity was from 81.0% to 97.2%. The molecular phylogeny of the sequences helps to clarify the taxonomy of this ‘difficult’ group. The A. dimidiatus genome contains about 60 000 repeats. According to the restriction patterns, repeats are arranged in tandem. The stDNA maps to the centromeric heterochromatin of most autosomes, both acrocentric and metacentric, but appears to be absent in the centromeric region of Y chromosomes. A well-conserved centromere protein B (CENP-B) box is present in the stDNA of A. russatus while it is degenerated in the other species.
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    Reviews in fish biology and fisheries 9 (1999), S. 325-352 
    ISSN: 1573-5184
    Keywords: evolution ; nomenclature ; phylogeny ; species ; systematics ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract It is argued, with selected examples from freshwaterfish systematics, that species should be viewed as anexpression of self-perpetuated clustered variation innature, conforming to the phylogenetic speciesconcept. The importance of species lies in thefunctional and structural significance of theirdiagnostic characters. Species can be nested by theircharacters into a tree diagram (phylogeny) orhierarchical alignment structure (classification) ofcharacter distribution, which may be taken to reflectevolution, the unifying theory of organismaldiversification. The phylogenetic species concept,which emphasizes recognition of a pattern ofvariation, describes better than any other proposedconcept the units called species by systematists.Other concepts are based on processes and normally donot permit recognition of particular taxa. Specieshave unique histories, and speciation may proceed bydifferent mechanisms. Whereas it may be postulatedthat speciation entails an irreversible change in thegenetic structure of taxa, recognized by phenotypicexpression and apparently also maintained to a largeextent by selection for a particular phenotype,species recognition must remain independent ofassumptions about species history and spatialdistribution. Species are monophyletic taxa and thespecies category does not differ significantly inphylogenetic regard from other systematic categories.Species as such are not necessarily evolutionaryunits. It is recommended to apply species names withreference to the diagnostic characters of the speciesand to abandon the type specimen described by theInternational Code of Zoological Nomenclature as anomenclatural reference unit.
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    World journal of microbiology and biotechnology 15 (1999), S. 7-10 
    ISSN: 1573-0972
    Keywords: Bacteria ; evolution ; molecular ; pairing ; recognition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract One principal function of biological molecules in bacteria is to recognize other molecules. This allows cells to assemble for regulated enzymatic catalysis and the integration of biochemical pathways. Recognition is also an essential and a specific property in base pairing of DNA in the double helix. Therefore, recognition events must have been central to early self-assembly of primitive genetic material, genomes, cells, genetic recombination and especially in enzyme-substrate-product recognition events. Molecular recognition events are examined with an emphasis on their central role in early prokaryotic evolution.
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  • 139
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    World journal of microbiology and biotechnology 15 (1999), S. 297-304 
    ISSN: 1573-0972
    Keywords: Bacteria ; cell ; diversity ; division ; Earth ; evolution ; metabolism ; self-assembly ; surfaces
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract About 80% of the evolutionary history of life on Earth is restricted to microorganisms which have had several billion years to speciate. The reasons for the origin (self-assembly) of life on Earth, bacterial cell division and why there are so many different bacteria and their global dispersal are discussed from an evolutionary perspective.
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  • 140
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    World journal of microbiology and biotechnology 15 (1999), S. 1-6 
    ISSN: 1573-0972
    Keywords: Bacteria ; conjugation ; DNA ; evolution ; gene transfer ; transduction ; transformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract The transfer of genetic information by transformation, conjugation and transduction in bacteria occurs frequently in nature. These diverse gene transfer mechanisms in bacteria are the result of evolution and are not linked to reproduction as in eukaryotic organisms. In this review, gene transfer in bacteria will be considered from an evolutionary perspective.
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  • 141
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    International journal of fracture 98 (1999), S. 55-76 
    ISSN: 1573-2673
    Keywords: Anisotropic ; damage ; evolution ; crack tenso.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract This paper deals with the establishment of anisotropic conjugate force based damage evolution laws in the framework of Rice's (1971) ‘normality structure’. The damage variable is the second-order crack tensor (Kachanov, 1980), which represents preexisting Griffith microcracks in a solid. The principal results include the deduced damage surfaces, potentials and kinetic equations for the basic internal variables and damage tensor during isothermal processes. The generalized pth order crack tensors and qth order energy release rates are introduced. The deduction in this paper is fully independent of the specific form of the free energy or Gibbs energy functions, so the deduced damage evolution laws have a wide applicable range including plasticity. Using the deviatoric stress as the conjugate force, the two well-established anisotropic yield surfaces, Karafillis and Boyce (1993) and Hill (1950), are recovered from the deduced damage surface.
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  • 142
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    Evolutionary ecology 13 (1999), S. 131-140 
    ISSN: 1573-8477
    Keywords: animal coloration ; aposematism ; evolution ; fluctuating asymmetry ; perception ; predation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Aposematic animals use anti-predator defence mechanisms such as distastefulness coupled with distinctive odours, sounds, or colour visual signals to predation from domestic chicks we show that the protective value of such visual warning displays is enhanced by increasing size of the signal pattern elements and decreased by pattern asymmetry. These results provide the first experimental evidence that predation may select for individual symmetry of visual warning displays, and concur with earlier demonstrations that asymmetric signals are more difficult to detect, learn, and remember, compared to symmetric signals. Collectively, our findings suggest that prey species possessing warning coloration should be subjected to selection for large and symmetric pattern elements.
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  • 143
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    Evolutionary ecology 13 (1999), S. 591-600 
    ISSN: 1573-8477
    Keywords: between-habitat distribution ; birds ; cognitive abilities ; evolution ; habitat selection ; interspecific relationships ; phytophagous insects ; stochasticity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Different habitat preferences in animals have been interpreted mostly as a result of different adaptive design of the species and/or as a result of interspecific competition. We propose an alternative view of evolution of habitat preferences. Our model is based on progressive stochastic acquisition of cognitive clues discriminating habitat features which correlate with expected fitness. We assume that acquisition of each cognitive clue allowing discrimination of ‘better’ and ‘worse’ habitats (according to the average fitness in each habitat) will constrain further evolution, because each further clue will discriminate habitats only within previously acquired preferences. Simple simulation model shows that if it is the case, even the species with equal habitat-related fitness differences will rapidly diversify in their habitat preferences. Therefore, similarly as in the evolution of other species-specific traits, the evolution of animal–habitat relationship may be strongly affected by stochastic events and historical contingency.
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  • 144
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    Evolutionary ecology 13 (1999), S. 619-639 
    ISSN: 1573-8477
    Keywords: aposematism ; bioluminescence ; Bufo bufo ; defence ; evolution ; Lampyridae ; predation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Bioluminescence most likely evolved under selection from the visually guided behaviours of co-occurring organisms, in particular that of predators. Many possible functions of light signals have been proposed and some are supported, but whatever their function may be, they make an easy target of the emitter unless it is defended. Therefore, we want to emphasise that in many cases bioluminescence can only have evolved through a defensive function. If this were the case, one would expect multimodal adaptiveness of luminescence with at least some evidence for a defensive function. Light signals could be used in many ways to reduce predation, but for spontaneous glowing species in particular, aposematism seems the only functional strategy. In a preliminary experiment with glowing and non-glowing dummy prey, we found that wild-caught toads discriminated against glowing prey. They showed significantly lower attack responses and higher latencies towards glowing prey dummies. However, some of the toads were less reluctant because they did not distinguish initially between prey with or without the light stimulus. Since the toads were collected in areas abundant with lampyrid glow-worms, which is the only luminous organism at this locality, and our results concur with the general evidence that they may have had previous experiences with this prey, we attribute the result to luminescent aposematism. From the literature, and from our own experiments, we know that toads and many other potential predators experience lampyrids as disagreeable prey. In future experiments we will test whether glow-worms are defended by luminescent aposematism or not.
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  • 145
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    Evolutionary ecology 13 (1999), S. 755-776 
    ISSN: 1573-8477
    Keywords: Batesian ; evolution ; learning ; mimicry ; Müllerian ; predators
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In this paper I argue that the nature of mimetic relationships remains contentious because there are insufficient data to enable full evaluation of theoretical models. There is, however, a growing appreciation of the need to draw together empirical studies to provide foundations for theoretical work. I review some recent data that considers the responses of predators to changing numbers of defended prey items and the nature of mimicry along a palatability spectrum. A simple model of predator behaviour is constructed which combines assumptions from Pavlovian learning studies with traditional ‘number dependent’ learning models. This model has two important properties. First it shows that Pavlovian assumptions can be represented in a simple model which generates interesting predictions. Second it indicates some areas that still need detailed empirical study – most importantly perhaps is the way that predators respond to prey with different levels of edibility.
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  • 146
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    Autonomous robots 7 (1999), S. 89-113 
    ISSN: 1573-7527
    Keywords: learning ; evolution ; plastic individuals ; Baldwin Effect
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract In the last few years several researchers have resorted to artificial evolution (e.g., genetic algorithms) and learning techniques (e.g., neural networks) for studying the interaction between learning and evolution. These studies have been conducted for two different purposes: (a) looking at the performance advantages obtained by combining these two adaptive techniques; (b) understanding the role of the interaction between learning and evolution in biological organisms. In this paper we describe some of the most representative experiments conducted in this area and point out their implications for both perspectives outlined above. Understanding the interaction between learning and evolution is probably one of the best examples in which computational studies have shed light on problems that are difficult to study with the research tools employed by evolutionary biology and biology in general. From an engineering point of view, the most relevant results are those showing that adaptation in dynamic environments gains a significant advantage by the combination of evolution and learning. These studies also show that the interaction between learning and evolution deeply alters the evolutionary and the learning process themselves, offering new perspectives from a biological point of view. The study of learning within an evolutionary perspective is still in its infancy and in the forthcoming years it will produce an enormous impact on our understanding of how learning and evolution operate.
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  • 147
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    Journal of bioeconomics 1 (1999), S. 151-190 
    ISSN: 1573-6989
    Keywords: ecology ; ethnic disparities ; evolution ; hookworm ; malaria ; parasites ; plantations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Economics
    Notes: Abstract The economic history of antebellum southern slavery has been and is the subject of ongoing debates among scholars. The literature includes assessments about the efficiency of slavery as well as about the adequacy of slave living standards and diets. Yet this literature under appreciates the important biologic and historical role that parasitic diseases played in the history of slavery. Recognizing the role of parasitic diseases calls into question some prevailing interpretations of slavery. Lacking direct evidence on slave diets, scholars turned to anthropometric evidence as proxies for the living standards of slaves, leading to the prevailing view that adult slaves were given adequate sustenance, but slave infants and children were severely malnourished. We argue it was not slave diets, but the combination of the plantation system and diseases that caused abnormally small slave children. The diseases that concern us, primarily hookworm and malaria, affected slaves ('blacks') and free labor ('whites') differently. Many slaves were concentrated on large plantations with infants and younger children crowded into 'nurseries.' This system allowed the maintenance and spread of diseases that adversely affected younger slaves. Southern white children however were less likely to be raised in conditions so conductive to parasitic diseases. The disease ecology of the antebellum South has implications for the prevailing view that slavery was more efficient than free labor. Biologic evidence indicates that people of tropical West African ancestry are more resilient to the effects of hookworm and malaria than European descendents. Thus when whites did contract these diseases, they were more afflicted than blacks. When slaves entered the adult work force they were taken from disease breeding grounds (slave nurseries) and sent into relatively (for blacks) healthy fields, while whites that went into the fields found a disease environment that was typically worse than that of their childhood. If black adults were more productive than were white adults because of a greater resilience to parasitic diseases, then part of any measured difference in productivity between slave and free farms should be attributed to the disease resistance of African descendents, rather than to any inherent efficiencies of slavery.
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  • 148
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    Acta biotheoretica 46 (1998), S. 141-156 
    ISSN: 1572-8358
    Keywords: locomotion ; Squamata ; lizards ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In lower quadrupedal vertebrates locomotor efficiency seems to result from the associate movements of the axial and appendicular systems, which are totally independent in structure and embryological origin. The curvature of the trunk, produced by a standing wave, magnifies the propulsive action of the limbs. In intermediate forms, the association of an elongate trunk with limbs reduced in size brings about functional consequences which may be noticeably diverse according to the degree of trunk elongation and limb reduction. According to environmental constraints, animals search for better locomotor efficiency, which implies the maintenance or breakage of this association of both locomotor systems. In some cases, limb action on the ground is added to the axial wave action through a perfect mutual adjustment of rhythmic activity, until mechanical inefficiency of the limbs is reached by possible loss of contact with the ground. In other cases, the limbs dragged on the ground during the stance phase act against the axial action or, on the contrary, are inhibited by the axial system. A review of available data tries to contribute to an understanding of the respective roles of both systems in the transition to limblessness.
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  • 149
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    BioMetals 11 (1998), S. 277-295 
    ISSN: 1572-8773
    Keywords: evolution ; classification ; EF-hand ; domain ; homology ; chimera ; congruence ; gene duplication ; gene fusion ; eukaryote ; dendrogram ; calmodulin ; troponin C ; light chain of myosin ; S100 ; parvalbumin ; calcineurin ; recoverin ; calpain ; sorcin ; diacylglycerol ; calbindin ; aequorin ; phospholipase C ; BM-40
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract Forty-five distinct subfamilies of EF-hand proteins have been identified. They contain from two to eight EF-hands that are recognizable by amino acid sequence as being statistically similar to other EF-hand domains. All proteins within one subfamily are congruent to one another, i.e. the dendrogram computed from one of the EF-hand domains is similar, within statistical error, to the dendrogram computed from another(s) domain. Thirteen subfamilies - including Calmodulin, Troponin C, Essential light chain, Regulatory light chain - referred to collectively as CTER, are congruent with one another. They appear to have evolved from a single ur-domain by two cycles of gene duplication and fusion. The subfamilies of CTER subsequently evolved by gene duplications and speciations. The remaining 32 subfamilies do not show such general patterns of congruence; however, some - such as S100, intestinal calcium binding protein (calbindin 9kd), and trichohylin - do not form congruent clusters of subfamilies. Nearly all of the domains 1, 3, 5, and 7 are most similar to other ODD domains. Correspondingly the EVEN numbered domains of all 45 subfamilies most closely resemble EVEN domains of other subfamilies. Many sequence and chem-ical characteristics do not show systemic trends by subfamily or species of host organisms; such homoplasy is widespread. Eighteen of the subfamilies are heterochimeric; in addition to multiple EF-hands they contain domains of other evolutionary origins.© Kluwer Academic Publishers
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  • 150
    ISSN: 1432-1211
    Keywords: Key words CD1 ; Rat ; Gene ; Organization ; Polymorphism
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  The non-major histocompatibility complex (MHC)-encoded CD1 family has recently emerged as a new antigen-presenting system that is distinct from either MHC class I or class II molecules. In the present study, we determined the genomic structure of the rat CD1 locus. It was extremely similar to mouse CD1 genes, especially to CD1D1. The 5′ flanking region of the CD1 gene contained the binding motifs for two cytokine-inducible transcription factors, NF-IL2-A and NF-IL6. Some regulatory elements found in MHC class I genes (enhancer A, enhancer B, and the IFN response element) were absent. It is of interest that a tyrosine-based motif for endosomal localization found in the human CD1b cytoplasmic tail was encoded by a single short exon which was conserved in all CD1 molecules except for CD1a. Southern blot and direct sequencing analyses of inbred rat strains suggested very limited polymorphism in the 5′ region where a hydrophobic ligand-binding groove is encoded; a single base substitution resulted in amino acid alteration of alanine (GCT) to valine (GTT) at codon 119. Comparison of the overall exon-intron organization of CD1 genes revealed that the length of the intron was also characteristic to each of the two classes of CD1 genes, classic CD1 and CD1D; such categorization has hitherto been made according to the sequence similarity of the coding region. This finding provides further support for the hypothesis that the two classes have different evolutionary histories. In contrast to the complete absence of the classic CD1 in rats and mice, the entire region of nonpolymorphic CD1D has been conserved through mammalian evolution. Similar functional properties of rodent CD1 and human CD1d are implied.
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  • 151
    ISSN: 1432-1211
    Keywords: Key words RT1.S3 ; Grc ; MHC ; Class I ; Rat
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  • 152
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    International journal of biometeorology 41 (1998), S. 101-104 
    ISSN: 1432-1254
    Keywords: Key words Space flight ; Rat ; Plantaris muscle ; GLUT-4 ; Citrate synthase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geography , Physics
    Notes: Abstract  The effects of 14 days of space flight on the glucose transporter protein (GLUT-4) were studied in the plantaris muscle of growing 9-week-old, male Sprague Dawley rats. The rats were randomly separated into five groups: pre-flight vivarium ground controls (PF-VC) sacrificed approximately 2 h after launch; flight groups sacrificed either approximately 5 h (F-R0) or 9 days (F-R9) after the return from space; and synchronous ground controls (SC-R0 and SC-R9) sacrificed at the same time as the respective flight groups. The flight groups F-R0 and F-R9 were exposed to micro-gravity for 14 days in the Spacelab module located in the cargo bay of the shuttle transport system – 58 of the manned Space Shuttle for the NASA mission named ”Spacelab Life Sciences 2”. Body weight and plantaris weight of SC-R0 and F-R0 were significantly higher than those of PF-VC. Neither body weight nor plantaris muscle weight in either group had changed 9 days after the return from space. As a result, body weight and plantaris muscle weight did not differ between the flight and synchronous control groups at any of the time points investigated. The GLUT-4 content (cpm/µg membrane protein) in the plantaris muscle did not show any significant change in response to 14 days of space flight or 9 days after return. Similarly, citrate synthase activity did not change during the course of the space flight or the recovery period. These results suggest that 14 days of space flight does not affect muscle mass or GLUT-4 content of the fast-twitch plantaris muscle in the rat.
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  • 153
    ISSN: 1432-0878
    Keywords: Key words N18-RE-105 cells ; Glutamate ; p53 ; Adriamycin ; Etoposide ; Differentiation ; SV40 large T antigen ; Mouse ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Process extension was induced in cells of the N18-RE-105 neuroblastoma-retinal hybrid line by toxic agents, including glutamate and the p53-inducing anticancer agents adriamycin and etoposide. Both adriamycin and glutamate activated p53 as measured by a plasmid transfection assay. It was therefore hypothesized that SV40 large T antigen, which binds p53, would interfere with cellular differentiation. To test this hypothesis, the temperature-sensitive form of SV40 large T was transduced into N18-RE-105 cells by retroviral infection. SV40 large T-infected cells became de-differentiated, grew in tightly-packed colonies, lost expression of neurofilament, and lost the ability to differentiate in response to glutamate and adriamycin. The de-differentiating effect of SV40 large T antigen may be due to binding and inactivation of cellular proteins, such as p53, p107, p130, p300, and retinoblastoma protein, which are important in cellular growth and differentiation. It is suggested that p53 may play a role in cellular differentiation, perhaps under unusual circumstances involving stress or cytotoxicity.
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  • 154
    ISSN: 1432-0878
    Keywords: Key words Elastin ; TGF-β1 ; Arteries ; In situ hybridization ; Immunohistochemistry ; Northern blot ; Ageing ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Several in vitro studies have previously demonstrated that the addition of TGF-β to aortic smooth muscle cells or skin fibroblasts stimulates elastin synthesis. It is not clear however whether, in vivo, TGF-β participates in the regulation of elastin synthesis, especially in physiological conditions. The aim of our study was to explore the localization of elastin mRNA and TGF-β1 in the rat thoracic aorta (an elastic artery) and caudal artery (a muscular artery). Elastin mRNA was localized by in situ hybridization and quantified using Northern blot analysis. TGF-β1 was detected using immunohistochemistry. The study was carried out as a function of age (rats of 3, 10, 20, and 30 months). We observed that TGF-β1 immunoreactivity is present predominantly, but not exclusively, at the sites of elastin synthesis as determined by elastin mRNA detection: in smooth muscle cells in the aorta and in endothelial cells in the caudal artery. The ability of exogenously added TGF-β1 (0.001–10 ng/ml) to modulate the steady-state levels of elastin mRNA in primary cultures of endothelial cells, smooth muscle cells, and fibroblasts isolated from the thoracic aorta was also studied. At the highest concentration used, elastin mRNA levels increased 5-fold in endothelial cells and 11-fold in smooth muscle cells. The demonstration that TGF-β1 immunoreactivity is present at the sites of elastin synthesis in the thoracic aorta and in the caudal artery and the observation that TGF-β1 induces an increase in elastin mRNA levels in cultured endothelial cells and smooth muscle cells suggest that TGF-β1 may be implicated, at least in part, in the physiological regulation of elastin gene expression.
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  • 155
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    Cell & tissue research 291 (1998), S. 445-454 
    ISSN: 1432-0878
    Keywords: Key words Serum-free medium ; Survival ; Chondroitin sulfate ; Culture substratum ; Brain neuron ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  When cells dissociated from the neonatal rat brains are plated on a poly-lysine-coated surface in a serum-free medium, they display a strange morphology: a dark and extended cell body. Preincubation of the surface with fetal bovine serum was found to inhibit the appearance of this strange contraction of the basal cell sheets in a dose-dependent manner. This finding indicated the presence of a factor(s) in the serum, which might be an appropriate substratum for prolonged survival of brain neurons. In the current study, this factor was highly purified through DEAE ion-exchange chromatography followed by gel filtration. The factor was eluted from a Superose column at fractions corresponding to a molecular weight greater than 1000 kDa. By SDS-PAGE analysis, these fractions were found to contain a major band (≥1000 kDa) positive for alcian blue and few minor bands faintly stainable with Coomassie blue. The activity of the purified sample, inducing the morphological change in cells, was diminished by incubation with chondroitinase ABC. Neither heparitinase II, hyaluronidase, nor trypsin modified the activity. An authentic chondroitin sulfate (type B) mimicked the serum action on the morphology of brain cells in early stages of culture. Taking these findings together, it is suggested that the factor in serum beneficial for the attachment of brain cells is composed of a chondroitin sulfate with a Mr greater than 1000 kDa. Cortical cells dissociated from the neonatal rat brain attached well to the purified factor-coated surface and displayed a healthy morphology: an optically-reflective cell body with thick neurites for at least 3 days in the absence of serum.
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  • 156
    ISSN: 1432-0878
    Keywords: Key words Retina ; Rod bipolar cells ; Amacrine cells ; Protein kinase C ; Glutamic acid decarboxylase ; GABA ; Synaptic circuitry ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  The synaptic connectivity between rod bipolar cells and GABAergic neurons in the inner plexiform layer (IPL) of the rat retina was studied using two immunocytochemical markers. Rod bipolar cells were stained with an antibody specific for protein kinase C (PKC, α isoenzyme), and GABAergic neurons were stained with an antiserum specific for glutamic-acid decarboxylase (GAD). Some amacrine cells were also labeled with the anti-PKC antiserum. All PKC-labeled amacrine cells examined showed GABA immunoreactivity, indicating that PKC-labeled amacrine cells constitute a subpopulation of GABAergic amacrine cells in the rat retina. A total of 150 ribbon synapses established by rod bipolar cells were observed in the IPL. One member of the postsynaptic dyads was always an unlabeled AII amacrine cell process, and the other belonged to an amacrine-cell process showing GAD immunoreactivity. The majority (n=92) (61.3%) of these processes made reciprocal synapses back to the axon terminals of rod bipolar cells. In addition, 78 conventional synapses onto rod bipolar axons were observed, and among them 52 (66.7%) were GAD-immunoreactive. Thus GABA provides the major inhibitory input to rod bipolar cells.
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  • 157
    ISSN: 1432-0878
    Keywords: Key words PC12 ; hNT2 ; Neuroblastoma cell lines ; NGF ; Retinoic acid ; Rat ; Human cell lines
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Neuroendocrine-specific protein (NSP) reticulons are expressed in neural and neuroendocrine tissues and cell cultures derived therefrom, while most other cell types lack NSP-reticulons. Three major subtypes have been identified so far, designated NSP-A, NSP-B, and NSP-C. We have investigated the correlation between the degree of neuronal differentiation, determined by morphological and biochemical criteria, and NSP-reticulon subtype expression. For this purpose, several human neuroblastoma cell lines, exhibiting different degrees of neuronal differentiation, were examined immuno(cyto) chemically. It became obvious that the expression of NSP-C, as detected by immunofluorescence microscopy and Western blotting, is most prominent in cell lines with a high degree of neuronal differentiation, such as LA-N-5. Such highly differentiated cells also express other neural and neuroendocrine markers, such as neural cell adhesion molecule (NCAM), neurofilament proteins, synaptophysin, and chromogranin. NSP-A was observed in all cell lines to a different extent. However, no clear correlation was observed with the degree of neuronal differentiation as defined by other neuronal and neuroendocrine markers or morphology. NSP-B could not be detected. The induction of neuronal differentiation with nerve growth factor, dbcAMP, and retinoic acid in the rat pheochromocytoma cell line PC12 and the human teratocarcinoma cell line hNT2, respectively, induced the expression of NSP-A and NSP-C in these cell lines parallel to the induction of neurofilament protein expression. It is concluded that NSP-C expression, in particular, is strongly correlated with neuronal differentiation.
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  • 158
    ISSN: 1432-0878
    Keywords: Key words Osteoclasts ; Osteoblasts ; Osteocytes ; Bone ; Substance P (SP) ; Neurokinin-1 receptor (NK1-R) ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Substance P (SP) is a neuropeptide that is released from axons of sensory neurons and causes signal transduction through the activation of the neurokinin-1 receptor (NK1-R). The present study demonstrates the distribution of SP-like-immunoreactive (SP-LI) axons and the localization of NK1-Rs in rat bone tissue using the avidin-biotin-peroxidase complex method. Axons with SP-LI were commonly found near the trabecular bone in the temporal bone marrow, but they were only sparsely distributed in the mandible, femur, and tibia. Immunoreactivity for NK1-Rs was found on the plasma membrane and in the cytoplasm of the osteoclasts. In the osteoblasts and osteocytes, a small number of weak, punctate immunoreactive products of NK1-Rs were distributed close to the plasma membrane. At the electron-microscopic level, immunoreactivity for NK1-R was distributed mainly in the whole cytoplasm, except for the clear zone of the osteoclasts, and in pit-like structures along the plasma membrane. The NK1-R-immunoreactive structures in the cytoplasm were divided into two types of organelles, consisting of vesicular and vacuolar structures (probably transport vesicles and early endosomes). In the osteoblasts and osteocytes, the number of NK1-R-positive vesicular structures was fewer than in the osteoclasts. These results thus suggest that SP secreted by the sensory axons could directly modulate bone metabolism via NK1-Rs.
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  • 159
    ISSN: 1432-0878
    Keywords: Key words Vinculin ; Talin ; Integrin ; Dystrophin ; Spectrin ; T-tubule ; Costamere ; Basal membrane ; Cardiac muscle cell ; Dilated cardiomyopathy ; Human ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The transverse tubule system of the cardiomyocyte remains undeformed despite the extreme forces it undergoes during the contraction-relaxation cycle, but the morphological basis for its stability remains unclear. Therefore, we have investigated the architecture and subcellular protein scaffold of the cardiac T-tubules and compared it with that of the costameres and of the free sarcolemma. Tissue samples from normal rat and monkey hearts, and left ventricular tissue from normal and cardiomyopathic human hearts obtained at transplantation surgery were investigated using immunocytochemistry and confocal microscopy and by electron microscopy. In addition, we used a re-differentiation model of isolated, cultured adult rat cardiomyocytes. The cell membrane of the cardiac T-tubules was found to contain the cell-matrix focal adhesion molecules (FAMs) vinculin, talin, the α5β1 integrin and the membrane-associated proteins (MAPs) dystrophin and spectrin. FAMs and MAPs were localized in the T-tubular membrane in a similar pattern: in longitudinally oriented myocytes as transverse punctate lines at the Z-level; in transversally cut myocytes a radial tubular network was found to extend throughout the interior of the cell. Immunolabeling for basement membrane components including collagen IV, fibronectin and laminin showed a colocalization with FAMs and MAPs parallel to the transverse T-tubules. The costameres of the sarcolemma showed a protein composition resembling that of the T-tubules but the intervening segments of free sarcolemma showed absence of FAMs and presence of MAPs. For the first time, we demonstrate the existence and protein composition of the T-tubular scaffold in the human heart. Furthermore, we show that cardiomyocytes from human failing hearts have less abundant but more dilated T-tubules than do experimental animals. These results indicate that the cardiac T-tubular system contains a subcellular scaffold closely resembling that of the costameres. It consists of FAMs, MAPs and basal lamina proteins that confer structural integrity to the cardiac T-tubular membrane during contraction/relaxation cycles.
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  • 160
    ISSN: 1432-0878
    Keywords: Key words Pancreas ; Stomach ; Duodenum ; Ribonuclease protection assay ; Immunocytochemistry ; Protease ; Rat ; (Sprague Dawley)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Prior studies have revealed the presence of chymotrypsinlike protease in peripheral organs, although no definitive evidence for the synthesis of this enzyme in tissue other than the pancreas is available. In an attempt to detect chymotrypsinogen mRNA in peripheral organs, a fragment of the pancreatic chymotrypsin mRNA from rat was amplified using PCR. The sequence was identified as a portion of the rat chymotrypsin B gene overlapping exon 5 through exon 7. It was subcloned into the pGEM-4Z vector and used as a template for the vitro transcription of an antisense riboprobe. Using ribonuclease protection and Northern blot analyses, chymotrypsin mRNA was detected in the rat pancreas, stomach, duodenum, ovary, and spleen. Monoclonal and polyclonal antisera against chymotrypsin detected chymotrypsinlike immunoreactivity in rat and human pancreas, rat stomach, duodenum and jejunum. Electrophoresis and immunoblotting revealed chymotrypsin-chymotrypsinogen bands (25–29 kDa) in the stomach and duodenum. Synthesis of a potent protease such as chymotrypsin in tissue other than pancreas is significant, suggesting a potential physiological and/or pathological role in these tissues.
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  • 161
    ISSN: 1432-0878
    Keywords: Key words Connexin ; Gap junctions ; Smooth muscle ; Intestinal pacemaker ; Confocal laser scanning microscope ; Dog ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Cellular networks of pacemaker activity in intestinal movements are still a matter of debate. Because gap-junctional intercellular communication in the intestinal wall may provide important clues for understanding regulatory mechanisms of intestinal movements, we have attempted to clarify the distribution patterns of three types of gap junction proteins. Using antibodies for connexin40, connexin43, connexin45, smooth muscle actin, and vimentin, immunocytochemical observations were made with the confocal laser scanning microscope on cryosections of fresh-frozen small intestine and colon of the dog and rat. Connexin 45 was localized along the deep muscular plexus of the small intestine in both dog and rat. Double labeling studies revealed that connexin45 overlapped with vimentin –, but not actin-positive areas, indicating the fibroblast-like nature of the cells, rather than their being smooth muscle-like. Connexin43 immunoreactivity appeared along the smooth muscle cell surface in the outer circular layer of the small intestine of both animals. Connexin 40 immunoreactivity was not observed in the muscle layer other than in the wall of large blood vessels. It is suggested that connexin45-expressing cells along the deep muscular plexus of dog and rat small intestine are likely to act as a constituent of a pacemaker system, which may include a conductive system, by forming a cellular network operating via specific types of gap junctions.
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  • 162
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    Cell & tissue research 292 (1998), S. 613-617 
    ISSN: 1432-0878
    Keywords: Key words Sensory nerve endings ; Calretinin ; Laryngeal mucosa ; Immunohistochemistry ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract The distribution of laminar nerve endings that contained immunoreactive calretinin was examined in the laryngeal mucosa of the adult rat. In whole-mount preparations, the immunoreactive laminar endings were distributed in the supraglottic region but not in the subglottic region. The laminar endings that arose from thick nerve fibers with or without swellings were identified as corpuscles with many variform terminal arborizations. They appeared to be located at the interface between the epithelium and the subepithelial connective tissue. The terminals were scattered under the basal lamina of the epithelium, and some of them were located within the epithelial layer. Immunoelectron microscopy revealed that both sub- and intraepithelial immunoreactive terminals that were filled with mitochondria were partly or totally ensheathed by Schwann cell processes. The denervation experiments, in which the superior laryngeal nerve was cut unilaterally or bilaterally, suggested that the laminar endings originate from the superior laryngeal nerve with strict ipsilateral innervation. The laminar endings might be associated with detection of changes in pressure in the laryngeal cavity or chemical stimuli.
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  • 163
    ISSN: 1432-0878
    Keywords: Key words Adhering junctions ; Desmosomes ; Endothelial junctions ; Plaque proteins ; Desmoplakin ; Cadherins ; Protein ZO-1 ; Rat ; cell culture
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Two major types of plaque-bearing adhering junctions are commonly distinguished: the actin microfilament-anchoring adhaerens junctions (AJs) and the desmosomes anchoring intermediate-sized filaments (IFs). Both types of junction usually possess the common plaque protein, plakoglobin, whereas the other plaque proteins and the transmembrane cadherins are mutually exclusive. For example, AJs contain E-, N-, or P-cadherin in combination with α- and β-catenin, vinculin and α-actinin, whereas in desmosomes, desmogleins and desmocollins are associated with desmoplakin and one or several of the plakophilins (PP1–3). Here we describe a novel type of adhering junction comprising proteins of both AJs and desmosomes and the tight junction (TJ) plaque protein, ZO-1, in a newly established, liver-derived tumorigenic rat cell line (RMEC-1). By immunofluorescence microscopy, cell-cell contacts are characterized by mostly continuous-appearing lines which are usually resolved by electron microscopy as extended arrays of closely spaced small plaque subunits. These plaque-covered regions are positive for plakoglobin, α- and β-catenin, the arm-repeat protein p120, vinculin, desmoplakin and protein ZO-1. They are positive for E-cadherin in cultures early on in passaging, but tend to turn negative for all known cadherins in densely grown cultures. On immunoblotting SDS-PAGE-separated proteins from dense-grown cell monolayers, “pan-cadherin” antibodies have reacted with a band at ∼140 kDa, identified as N-cadherin by peptide fingerprinting of the immunoprecipitated protein, which for reasons not yet clear is modified or masked in immunolocalization experiments. The exact histological derivation of RMEC-1 cells is not known. However, the observations of several endothelial markers and the fact that all cells are rich in IFs containing vimentin and/or desmin, while only subpopulations also reveal IFs containing CKs 8 and 18, is suggestive of a mesenchymal, probably endothelial origin. We discuss the molecular relationship of this novel type of extended junction with other types of adhering junctions.
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  • 164
    ISSN: 1432-0878
    Keywords: Key words Nerve growth factor ; Hypertension ; Contact inhibition ; Proliferation ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Elevated target-derived smooth muscle nerve growth factor (NGF) and resultant neurogenic plasticity are associated with both hypertension and hyperactive voiding in spontaneously hypertensive rats (SHRs: hypertensive, behaviorally hyperactive). In culture, vascular (VSMCs) and bladder (BSMCs) smooth muscle cells derived from SHRs secrete higher levels of NGF, proliferate more rapidly, and achieve higher density at confluence than do control Wistar-Kyoto (WKY) cells. To elucidate growth-related contributions to the elevated tissue NGF observed in SHRs, we examined vascular VSMC and BSMC NGF secretion in two inbred cell lines (WKHTs, hypertensive; WKHAs, hyperactive) derived from SHRs and WKYs to assess the phenotypic association of altered NGF metabolism with either hypertension or behavioral hyperactivity. Cell density, rather than growth rates, was the most important factor with respect to NGF secretion. VSMC density varied such that WKHT=SHR〉WKY= WKHA, higher VSMC density being associated with higher NGF output. However, in BSMC cultures, NGF output was the lowest in high density cell lines, with WKHT〉SHR〉WKY〉WKHA. SHR BSMCs had the second highest cell density and NGF secretion level. Elevated packing density, presumably because of a lack of contact inhibition, co-segregated with the hypertensive phenotype in both VSMCs and BSMCs. Thus, dysfunctional smooth muscle growth characteristics may contribute to the augmented vascular and bladder NGF content associated with high blood pressure and hyperactive voiding in SHRs.
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  • 165
    ISSN: 1432-0878
    Keywords: Key words Endothelial cells ; Alkaline phophatase ; Primary cultures ; Proliferation ; Gene expression ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Primary cultures of rat myocardial capillary endothelial cells were established and characterized. A range of typical endothelial cell-specific markers were retained in vitro. Cell kinetic studies in confluent endothelial-cell cultures in vitro revealed a roughly 50-fold increase in the proportion of cells in s-phase, indicating a very considerable shortening of cell turnover time, compared to in vivo conditions. Alkaline phosphatase enzyme activity and encoding mRNA are strongly expressed in myocardial capillary endothelial cells in vivo, but were not detectable in vitro. This was true in cell cultures from two strains of rat, which revealed significantly different enzyme expression levels in vivo. In co-cultures of pericytes and endothelial cells, positive ALP enzyme reaction was detected in pericytes, which in vivo show only very weak enzyme reactivity. Treatment of cell cultures with ≤10 M retinoic acid had no effect in pure endothelial cell cultures, but did increase ALP expression of pericytes in co-cultures. The observation of a loss of endothelial ALP expression in vitro supports other in vitro as well as our own in vivo observations, indicating a negative correlation of ALP expression and proliferative activity of endothelial cells.
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  • 166
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    Cell & tissue research 291 (1998), S. 575-579 
    ISSN: 1432-0878
    Keywords: Key words Chromatoid body ; Polysomes ; RNA ; Spermatid ; Spermatogenesis ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  A procedure for isolating the chromatoid body from the testis of 40-day-old rats was developed. Electron-microscopical analysis indicated that about 70% of the isolated organelles were chromatoid bodies, while the remaining structures corresponded to dense bodies and probably to satellites. Negative staining of the isolated organelles revealed the presence of polysome-like structures in about 20% of the chromatoid bodies suggesting that the polysomes were not due to contamination with cytoplasmic polysomes. Moreover, the presence of RNA in the stroma of the chromatoid body was confirmed by RNAse-gold staining. Preliminary electrophoretic analysis of the RNA extracted from the organelles revealed the presence of a complex population of RNAs including 5.8 and 5 S ribosomal RNAs but no tRNA.
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  • 167
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    Cell & tissue research 292 (1998), S. 367-375 
    ISSN: 1432-0878
    Keywords: Key words Larynx ; Edema ; Mast cells ; Compound 48/80 ; Substance P ; Capsaicin ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  In the rat larynx, plasma exudation and edema formation were studied by light and electron microscopy after i.v. injections of the mast cell activator compound 48/80, substance P, and capsaicin. The morphological effects of substance P and capsaicin on connective tissue mast cells in vivo were also examined. Of the drugs tested, only compound 48/80 degranulated the connective tissue mast cells. All drugs induced a subepithelial plasma exudation in the subglottic region, with edema in the lamina propria and widened intraepithelial intercellular spaces, though the tight junction regions seemed intact. In the epiglottis, 10 min after compound 48/80 injection, there was edema in the lamina propria on the lingual side, with an intact and tight epithelial lining. No morphological sign of edema was found in the epiglottis after injection of substance P or capsaicin. The pronounced effect found in the epiglottic region after compound 48/80 injection was due to the release of mediators such as histamine and 5-hydroxytryptamine from the connective tissue mast cells. This study supports the belief that substance P in vivo mediates an increased vascular permeability by a direct effect on the blood vessels – a mechanism distinct from mast cell degranulation.
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  • 168
    ISSN: 1432-0878
    Keywords: Key words Angiogenesis ; Capillary growth ; Prazosin ; Shear stress ; Skeletal muscle ; Ultrastructure ; Rat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  Chronic vasodilatation represents a stimulus for capillary growth associated with increased luminal shear stress. We have examined the ultrastructure of more than 2000 capillaries to establish whether the sequence of angiogenesis in response to this stimulus is similar to that described during development and under pathological circumstances. Administration of the α1-blocker prazosin to rats for 2 weeks led to a greater capillary length density in extensor hallucis proprius muscles without any change in capillary tortuosity: J v(c,f)=262±54 compared with 350±17 mm–2, control compared with prazosin (P〈0.002). There were obvious signs of endothelial cell (EC) activation after prazosin treatment, including an increased proportion of capillaries with rough endoplasmic reticulum, large cytoplasmic vacuoles, thickened endothelium and an irregular luminal surface. Capillaries from control muscles had a maximum of three ECs in cross section, whereas four ECs were noted in 0.8+0.5% of capillaries after 1 week (n.s.) and 2.5±0.9% after 2 weeks (P〈0.01) of treatment. This could be due to elongation and/or migration of ECs, as cell proliferation has not been described at these time points. There was also an increase in the proportion of capillaries having a narrow, slit-like lumen (1.7±0.8% of controls; 7.1±1.9% at 1 week; 8.8±2.5% at 2 weeks; P〈0.02), some of which were smaller in size (less than 2 μm diameter) than in controls (3–5 μm) and/or “seamless”, i.e. lacking EC junctions. These may represent newly formed vessels. Focal discontinuity of the basement membrane and abluminal EC processes were rarely seen, and capillary growth by abluminal sprouting appeared to be very infrequent (less than 0.001% of profiles). Of more importance was growth starting from the luminal side. Significantly more thin cytoplasmic processes were observed protruding into the lumen of capillaries after 1 week (47.5±6.2%, P〈0.001) and 2 weeks of prazosin (34.2±5.5%, P〈0.05) than in control vessels (16.7±3.9%). Some of these traversed the entire lumen and connected with endothelium of the opposite side, probably involving membrane fusion, resulting in the appearance of a double lumen. Individual capillaries with a complete double lumen were observed after 2 weeks’ prazosin but comparatively rarely, in only four out of six muscles. These findings indicate a pattern of luminal growth which is completely different from intussusceptive growth previously described during development, and from the abluminal capillary sprouting seen under pathological circumstances.
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    Plant systematics and evolution 210 (1998), S. 57-86 
    ISSN: 1615-6110
    Keywords: Alliaceae ; Allium ; Nuclear DNA amount ; adaptation ; evolution ; infrageneric classification
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The 4C DNA amounts of 86 species fromAllium subgg.Allium, Rhizirideum, Bromatorrhiza, Melanocrommyum, Caloscordum andAmerallium show a 8.35-fold difference ranging from 35.60 pg (A. ledebourianum, 2n = 16) to 297.13 pg (A. validum 2n = 56). At diploid level the difference is 3.57-fold betweenA. ledebourianum (35.60 pg) andA. ursinum (127.14 pg). This shows that a significant loss and/or gain of DNA has occurred during evolution. On average subgg.Rhizirideum andAllium have less DNA amount than subgg.Melanocrommyum andAmerallium. The distribution of nuclear DNA amounts does not show discontinuous pattern and regular groups. The evolution of genome size has been discussed in relation to polyploidy and genomes, heterochromatin, adaptive changes in morphological characteristics, phenology and ecological factors, and infrageneric classification.
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  • 170
    ISSN: 1573-5125
    Keywords: microcrustaceans ; Daphnia ; evolution ; interspecific hybridization ; molecular systematics ; aquatic ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cladoceran crustaceans are an important component of zooplankton in a wide range of freshwater habitats. Although the ecological characteristics of several cladoceran species have been well studied, biogeographical studies have been hampered by problematic taxonomic affiliations. However, recently developed molecular techniques, provide a powerful tool to subject aquatic taxa to comparative analyses. Here we highlight recent molecular approaches in aquatic ecology by presenting a simple method of DNA preparation and PCR amplification of the mitochondrial DNA (16S rDNA) in species from nine different families within the cladocera. On a broad taxonomic scale, sequence analysis of this mtDNA fragment has been used to produce the first molecular based phylogeny of the cladocera. This analysis clustered the cladoceran families in a fashion similar to that suggested by previous systematic classifications. In a more detailed analysis of the family Daphniidae, nuclear randomly amplified polymorphic DNA (RAPD), mitochondrial restriction fragment length polymorphism (RFLP) and morphological analyses were combined to identify species and interspecific hybrids within the Daphnia galeata species complex across 50 lakes in 13 European countries and one lake in Africa. The study revealed interspecific hybridization and backcrossing between some taxa (D. cucullata and D. galeata) to be widespread, and species and hybrids to frequently occur in sympatry. Genetic, as well as morphological information, suggests the occurrence of D. hyalina outside the Holarctic.
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  • 171
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    Biology and philosophy 13 (1998), S. 443-470 
    ISSN: 1572-8404
    Keywords: Buffon ; Darwin ; Gayon ; species ; individuality ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract Gayon's recent claim that Buffon developed a concept of species as physical individuals is critically examined and rejected. Also critically examined and rejected is Gayon's more central thesis that as a consequence of his analysis of Buffon's species concept, and also of Darwin's species concept, it is clear that modern evolutionary theory does not require species to be physical individuals. While I agree with Gayon's conclusion that modern evolutionary theory does not require species to be physical individuals, I disagree with his reasons and instead provide logical rather than historical reasons for the same conclusion.
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  • 172
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    Biology and philosophy 13 (1998), S. 255-261 
    ISSN: 1572-8404
    Keywords: evolution ; speciation ; levels of selection
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract Biologists often define evolution as a change in allele frequencies. Consideration of the evolution of the pocket mouse will show that it is possible to have evolution without any change in the allele frequencies in a population (through change in the genotype frequencies). The implications of this for genic selectionism are then discussed. Sober and Lewontin (1982) have constructed an example to demonstrate the “blindness” of genic selectionism in certain cases. Sterelny and Kitcher (1988) offer a defense against these arguments which assumes a conventionalist approach to populations. The example considered here will be shown to offer a more plausible and far-reaching argument against the view that alleles can always be seen as the units of selection.
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  • 173
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    Biology and philosophy 13 (1998), S. 233-244 
    ISSN: 1572-8404
    Keywords: reference ; meaning ; individual ; class ; definition ; clade ; evolution ; phylogeny ; phylogenetic taxonomy ; systematics ; tree-thinking ; cladistics ; intention ; extension
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract Although naming biological clades is a major activity in taxonomy, little attention has been paid to what these names actually refer to. In philosophy, definite descriptions have long been considered equivalent to the meaning of names and biological taxonomy is a scientific application of these ideas. One problem with definite descriptions as the meanings of names is that the name will refer to whatever fits the description rather than the intended individual (clade). Recent proposals for explicit phylogenetic definitions of clade names suffer from similar problems and we argue that clade names cannot be defined since they lack intension. Furthermore we stress the importance of “tree-thinking” for phylogenetic reference to work properly.
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  • 174
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    Biology and philosophy 13 (1998), S. 187-204 
    ISSN: 1572-8404
    Keywords: evolution ; meme ; gene ; morality ; culture ; psychological predisposition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract Dennett (1995) argues that memes or cultural replicators are largely autonomous of genes, and that they are fairly efficacious in determining who we are and what we do. I argue that Dennett's arguments are wrong in several aspects, which we can see by analyzing processes at appropriate levels. Specifically, I argue that it is not true that we as persons are created largely by memes, that our memes are not largely independent of our genes, and that we can use the universality of memes to make inferences about genetic predispositions. Finally, by suggesting an innate psychological mechanism for morality, I argue that morality may be largely the effect of genetic predispositions rather than autonomous.
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  • 175
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    Biology and philosophy 13 (1998), S. 359-391 
    ISSN: 1572-8404
    Keywords: adaptation ; algorithm ; atavism ; contingency ; deep homology ; Dennett ; development ; disparity ; epicurean selectionism ; evolution ; exaptation ; Gould ; metaphors ; punctuated equilibrium ; selectionism ; spandrels
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract In his recent book on Darwinism, Daniel Dennett has offered up a species of a priori selectionism that he calls algorithmic. He used this view to challenge a number of positions advocated by Stephen J. Gould. I examine his algorithmic conception, review his unqualified enthusiasm for the a priori selectionist position, challenge Dennett's main metaphors (cranes vs. skyhooks and a design space), examine ways in which his position has lead him to misunderstand or misrepresent Gould (spandrels, exaptation, punctuated equilibrium, contingency and disparity), and discuss recent results in developmental biology that suggest that an a priori position does not fill the demands of an evolutionary biology. I conclude by insisting that evolutionary biology is many leveled, complicated, and is carried on an ever shifting and expanding empirical base that when disregarded results in caricature.
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  • 176
    ISSN: 1573-5125
    Keywords: ecomorphology ; evolution ; feeding ; fish stocks ; major histocompatibility complex ; molecular genetics ; species flock
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A unique species flock of large barbs (Barbus spp.) from Lake Tana is presented, from the level of fish stocks to molecules. Evidence is given for the species status of 14 morphotypes of large barbs. They distinctly differ in: (1) head and body morphometrics, (2) food preferences, (3) distribution patterns, (4) maximal body size, (5) spawning area and period, and (6) molecular genetic characters. Most types show early morphological divergence at small size. Major Histocompatibility Complex (MHC) genes, encoding cell membrane proteins involved in defence against pathogens, were found to be diagnostic for the species' genetic identity. A strong selective pressure on particular amino acid positions in the MHC protein sequence most probably arose in response to different pathogen loads from the newly invaded ecological niches after formation of Lake Tana, ca. two million years ago. Arguments for a sympatric origin of this species flock are discussed. An evolutionary scenario suggests a riverine ancestral Barbus intermedius invading Lake Tana after its formation by volcanic blocking of the Blue Nile river and its isolation by waterfalls. Specialisation for particular food types and disruptive selection on many feeding structures are hypothesized as the evolutionary drive in speciation. The causal relationship between the diversity in feeding structures and food types is explained from experiments and models. As an example, the potential food niche of three barb species is predicted from parameter values measured from a large set of feeding structures and tested against the actual gut contents. The co-occurrence of eight piscivorous barb species is unique for cyprinid fish, which lack oral jaw teeth and a stomach. The significance of this aquatic ecosystem as a multidisciplinary evolutionary laboratory and the need for a wise balance between exploitation and conservation is stressed.
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    Autonomous agents and multi-agent systems 1 (1998), S. 59-88 
    ISSN: 1573-7454
    Keywords: agents ; evolution ; information filtering ; world wide web
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science
    Notes: Abstract Amalthaea is an evolving, multi-agent ecosystem for personalized filtering, discovery, and monitoring of information sites. Amalthaea's primary application domain is the World Wide Web and its main purpose is to assist its users in finding interesting information. Two different categories of agents are introduced in the system: filtering agents that model and monitor the interests of the user and discovery agents that model the information sources.A market-like ecosystem where the agents evolve, compete, and collaborate is presented: agents that are useful to the user or other agents reproduce, while low-performing agents are destroyed. Results from various experiments with different system configurations and varying ratios of user interests versus agents in the system are presented. Finally issues like fine-tuning the initial parameters of the system and establishing and maintaining equilibria in the ecosystem are discussed.
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    Plant molecular biology 36 (1998), S. 285-295 
    ISSN: 1573-5028
    Keywords: Chlamydomonas eugametos ; evolution ; genome sequence ; green algae ; group I introns ; mitochondrial DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The complete nucleotide sequence of the Chlamydomonas eugametos (Chlamydomonadales, Chlorophyceae, sensu Mattox and Stewart) mitochondrial genome has been determined (22 897 bp, 34.6% G + C). The genes identified in this circular-mapping genome include those for apocytochrome b, subunit 1 of the cytochrome oxidase complex, subunits 1, 2, 4, 5, and 6 of the NADH dehydrogenase complex, discontinuous large and small subunit ribosomal rRNAs and three tRNAs whose anticodons CAU, CCA and UUG are specific for methionine, tryptophan and glutamine, respectively. The C. eugametos mitochondrial DNA (mtDNA), therefore, shares almost the same reduced set of coding functions and similar unusual features of rRNA gene organization with the linear 15.8 kb mtDNA of Chlamydomonas reinhardtii, the only other completely sequenced chlamydomonadalean mtDNA. However, sequence analysis of the C. eugametos mtDNA has revealed the following distinguishing features relative to those of C. reinhardtii: (1) the absence of a reverse transcriptase-like gene homologue, (2) the presence of an additional gene for tRNAmet that may be a pseudogene, (3) a completely different gene order, (4) transcription of all genes from the same mtDNA strand, (5) a lower G + C content, (6) less pronounced bias in codon usage, and (7) nine group I introns, several of which contain open reading frames coding for potential maturases/endonucleases and two have a nucleotide at the 5′ or 3′ splice site of the deduced precursor RNAs that deviates from highly conserved nucleotides reported in other group I introns. The features of mitochondrial genome organization and gene content shared by C. eugametos and C. reinhardtii contrast with those of other green algal mtDNAs that have been characterized in detail. The deep evolutionary divergence between these two Chlamydomonas taxa within the Chlamydomonadales suggests that their shared features of mitochondrial genome organization evolved prior to the origin of this group.
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  • 179
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    Evolutionary ecology 12 (1998), S. 153-164 
    ISSN: 1573-8477
    Keywords: algae ; anti-predator adaptations ; arms race ; Chlorella vulgaris ; chrysophytes ; continuous culture ; evolution ; flagellates ; multicellularity ; Ochromonas vallescia ; phagocyte ; predator–prey interactions ; selective pressure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Predation was a powerful selective force promoting increased morphological complexity in a unicellular prey held in constant environmental conditions. The green alga, Chlorella vulgaris, is a well-studied eukaryote, which has retained its normal unicellular form in cultures in our laboratories for thousands of generations. For the experiments reported here, steady-state unicellular C. vulgaris continuous cultures were inoculated with the predator Ochromonas vallescia, a phagotrophic flagellated protist (‘flagellate’). Within less than 100 generations of the prey, a multicellular Chlorella growth form became dominant in the culture (subsequently repeated in other cultures). The prey Chlorella first formed globose clusters of tens to hundreds of cells. After about 10–20 generations in the presence of the phagotroph, eight-celled colonies predominated. These colonies retained the eight-celled form indefinitely in continuous culture and when plated onto agar. These self-replicating, stable colonies were virtually immune to predation by the flagellate, but small enough that each Chlorella cell was exposed directly to the nutrient medium.
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    Evolutionary ecology 12 (1998), S. 245-250 
    ISSN: 1573-8477
    Keywords: environmental sex determination ; evolution ; nest-site philopatry ; reptiles ; sex ratio
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The reason for the frequent occurrence of environmental sex determination (ESD) in reptiles is still not well understood, although much effort has been devoted to solving the issue. Stimulated by the occurrence of nest-site philopatry in some species, this paper examines a diploid model of the influence of nest-site philopatry on the evolution of ESD. Analysis shows that nest-site philopatry can lead to ESD because the fitnesses of sons and daughters are not influenced in the same way by nest-site quality. Daughters inherit the nest site and thus benefit more than sons from a high-quality nest site. Conversely, the fitness of daughters at low-quality nest sites is lower compared to the fitness of sons. Therefore, genes causing ESD can spread by causing the production of more sons at low-quality nest sites and more daughters at high-quality nest sites. Suggestions are made to test empirically whether nest-site philopatry led to the evolution of ESD.
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    Plant systematics and evolution 211 (1998), S. 43-56 
    ISSN: 1615-6110
    Keywords: Ranunculaceae ; Adonis ; Morphology ; growth pattern ; taxonomy ; ecology ; climatic requirements ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Adonis sect.Consiligo is split into three subsections based on morphology, growth pattern, pollen and fruit morphology. For all species distribution maps are provided and discussed with regard to their ecology and climatic requirements. These data reveal additional characters that support the classification of the taxa. Most species of the section grow in continental Eurasiatic steppes and mountain steppe habitats. Only the species of subsect.Amurenses grow in Far Eastern temperate forests and prefer a more oceanic climate. The taxonomic position of these strongly divergent species is supported by the distributional and ecological data. The evolution ofAdonis sect.Consiligo occurred under strong climatic control. During evolution the taxa could only slightly widen their ecological amplitude and, thus, ecology remained rather stable except that of the subsect.Amurenses. Ecological and distributional data can be used to validate taxonomy and phylogeny and reveal additional informations.
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  • 182
    ISSN: 1615-6110
    Keywords: Alstroemeriaceae ; Alstroemeria aurea ; A. ligtu ; A. magnifica ; C-band polymorphism ; evolution ; flow cytometry ; genome size
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Among a total of 43 accessions ofAlstroemeria aurea, A. ligtu andA. magnifica nuclear DNA amounts (2C-values) showed significant intraspecific variation, 1.09, 1.21 and 1.15 fold, respectively, when determined through flow cytometric measurements of fluorescence of propidium iodide (PI) stained nuclei. After staining with another fluorochrome, 4′,6-diamidino-2-phenylindole (DAPI), an intraspecific variation of 1.10, 1.11 and 1.12 fold, respectively, was found. C-band polymorphisms were present among and within the accessions of all three species. In some cases only very small differences in C-banding pattern were observed. In other cases, however, differences were more prominent. Besides C-band polymorphism, there were also instances of chromosome length polymorphism, which concerned the total chromosome complement or single chromosomes. The variation in nuclear DNA amount inA. aurea andA. ligtu was more or less continuous, except for one accession ofA. ligtu subsp.simsii. Artificial selection and possibly introgression of chromosomes from other species may have moulded the karyotypes of some of the accessions ofA. aurea, a species that has been under cultivation for more than 160 years. The variation as observed inA. magnifica subsp.magnifica was discontinuous and could be due to a broad species concept.
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  • 183
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    Annals of biomedical engineering 26 (1998), S. 526-533 
    ISSN: 1573-9686
    Keywords: Rat ; Artery: femoral ; Arterial diameter ; Vasomotion ; Shear stress ; Flow-dependent constriction ; Step flow ; Oscillating flow
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Technology
    Notes: Abstract The effects of flow and flow changes on arterial diameter were investigated in vitro on isolated rat femoral arteries. Segments of femoral arteries were excised, mounted on microcannulas, and perfused with Tyrode's solution (37°C). Perfusion pressure was kept constant at 90 mm Hg. The mean external diameter after equilibration at a transmural pressure of 90 mm Hg was 720 ± 50 μ m (n=12). Vessels were then constricted with norepinephrine (1 μM in the superfusion solution) to 77% ± 13% of the resting diameter; acetylcholine was used to check endothelial function. The external diameter was measured continuously using video microscopy. The arteries were subjected to two different types of flow variations: (a) step changes in flow (increase and decrease, n=6) and (b) low-frequency sinusoidal flow variations (frequencies ranging from 0.002 to 0.1 Hz, n=11). Flow ranged from 0 to 800 μ l/min (shear stress ranging from 0 to 15 dyn/cm2). All measured vessels constricted as flow increased. Flow steps induced exponential-like contractions (flow increase) or relaxations (flow decrease) with mean characteristic time constants 31 ± 4 and 22 ± 2 s, respectively. Sinusoidal flow oscillations induced sinusoidal diameter oscillations with a time delay. An increase in the frequency of the flow led to a decrease of both the amplitude of the flow-induced diameter oscillations and the phase shift between flow and diameter. The dynamic diameter response to flow changes could be characterized by a first-order low-pass filter with a time constant of 22 s. © 1998 Biomedical Engineering Society. PAC98: 8745Hw
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  • 184
    ISSN: 1573-5028
    Keywords: Arabidopsis thaliana ; transposable element ; En-1 ; mutagenesis ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The behavior of the autonomous maize transposable element En/Spm of maize was studied in Arabidopsis. Transgenic Arabidopsis plants carrying En-1 elements were propagated for 12 generations using a single seed descent procedure. The distribution and activity of the En-1 element was monitored using Southern DNA hybridisations in generations 1, 6 and 12. In the first generation the highest number of En-1 insertions per line was 7, which increased to 20 in generation 12. The average number of En-1 insertions increased only slightly in the population, due to a gradual accumulation of segregants that lost the transposable element. During the development of the En-1 mutagenised population the element remained active even in the high-copy lines. In situ hybridisation demonstrated that multiple En-1 insertions were distributed over all Arabidopsis chromosomes. From the initial En-1 mutagenised populations many unstable gene mutations were recovered, indicating that En-1 can be used as a efficient tool for gene tagging in Arabidopsis.
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  • 185
    ISSN: 1573-5028
    Keywords: evolution ; fluorescence in situ hybridization (FISH) ; genome ; repetitive DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Isolation and characterization of the most prominent repetitive element families in the genome of tetraploid cotton (Gossypium barbadense L; [39]) revealed a small subset of families that showed very different properties in tetraploids than in their diploid progenitors, separated by 1-2 million years. One element, B77, was characterized in detail, and compared to the well-conserved 5S and 45S rRNA genes. The 572 bp B77 repeat was found to be concentrated in several discontinuous tandem arrays confined to a single 550 kb SalI fragment in tetraploid cotton. Genetic mapping based on the absence of the pentameric ‘rung’ in the G. barbadense ‘ladder’ showed that B77 maps to a D-subgenome chromosome. In situ hybridization supports the contention that the array is confined largely to a single chromosomal site in the D-subgenome. The B77 repeat has undergone a substantial increase in copy number since formation of tetraploid cotton from its diploid relatives. RFLPs observed among tetraploid cotton species suggest that amplification and/or rearrangement of the repeat may have continued after divergence of the five tetraploid cotton species. B77 contains many short direct repeats and shares significant DNA sequence homology with a Nicotiana alata retrotransposon Tna1-2 integrase motif. The recent amplification of B77 on linkage group D04 suggests that the D-subgenome of tetraploid cotton may be subject to different evolutionary constraints than the D-genome diploid chromosomes, which exhibit few genome-specific elements. Further, the abundance of B77 in G. gossypioides supports independent evidence that it may be the closest extant relative of the D-genome ancestor of cotton.
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  • 186
    ISSN: 1573-5117
    Keywords: Acanthocephala ; aschelminthes ; cladistics ; evolution ; Gnathostomulida ; phylogeny ; pseudocoelomates ; Rotifera
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We investigated phylogenetic relationships of phylum Rotifera using cladistic analysis to uncover all most-parsimonious trees from a data set comprising 60 morphological characters of nine taxa: one Acanthocephala, six Rotifera, and two outgroups (Turbellaria, Gnathostomulida). Analysis of our matrix yielded a single most-parsimonious tree. From our analysis we conclude the following: (1) Class Digononta is paraphyletic; (2) it is still premature to reject rotiferan monophyly; (3) the classification hierarchy that best conforms to this morphologically based, cladistic analysis is similar to several traditional schemes. In spite of these results, it is significant that this analysis yielded a tree that is incongruent with those trees developed from molecular data or by using the principles of evolutionary taxonomy.
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  • 187
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    Hydrobiologia 287-388 (1998), S. 109-115 
    ISSN: 1573-5117
    Keywords: behavior ; mating ; evolution ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The recent isolation of a mate recognition pheromone in the marine rotifer Brachionus plicatilis Müller has shed new light on the mate recognition system of rotifers. One result is improved understanding of the importance of mating behavior as a highly efficient process used by rotifers to choose conspecifics. There are many differences in the main characteristics of mating behavior in members of five different families of rotifers. The present work describes the use of these characteristics to assess species boundaries, especially where boundaries between two or more species are unclear. The method proposed here can assess quantitatively the response of males of one species to females of a questionable taxon by measuring the percentage of matings initiated and the number of completed copulations. The data generated can then be used together with molecular, morphological, and other data to determine the species boundaries. This approach can help distinguish between morphological differences resulting from evolutionary divergence of species and morphological differences induced by environmental or ecological factors.
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  • 188
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    Hydrobiologia 387-388 (1998), S. 109-115 
    ISSN: 1573-5117
    Keywords: behavior ; mating ; evolution ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The recent isolation of a mate recognition pheromone in the marine rotifer Brachionus plicatilis Müller has shed new light on the mate recognition system of rotifers. One result is improved understanding of the importance of mating behavior as a highly efficient process used by rotifers to choose conspecifics. There are many differences in the main characteristics of mating behavior in members of five different families of rotifers. The present work describes the use of these characteristics to assess species boundaries, especially where boundaries between two or more species are unclear. The method proposed here can assess quantitatively the response of males of one species to females of a questionable taxon by measuring the percentage of matings initiated and the number of completed copulations. The data generated can then be used together with molecular, morphological, and other data to determine the species boundaries. This approach can help distinguish between morphological differences resulting from evolutionary divergence of species and morphological differences induced by environmental or ecological factors.
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  • 189
    ISSN: 1573-5117
    Keywords: Acanthocephala ; aschelminthes ; cladistics ; evolution ; Gnathostomulida ; phylogeny ; pseudocoelomates ; Rotifera
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We investigated phylogenetic relationships of phylum Rotifera using cladistic analysis to uncover all most-parsimonious trees from a data set comprising 60 morphological characters of nine taxa: one Acanthocephala, six Rotifera, and two outgroups (Turbellaria, Gnathostomulida). Analysis of our matrix yielded a single most-parsimonious tree. From our analysis we conclude the following: (1) Class Digononta is paraphyletic; (2) it is still premature to reject rotiferan monophyly; (3) the classification hierarchy that best conforms to this morphologically based, cladistic analysis is similar to several traditional schemes. In spite of these results, it is significant that this analysis yielded a tree that is incongruent with those trees developed from molecular data or by using the principles of evolutionary taxonomy.
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  • 190
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    Genetica 102-103 (1998), S. 61-69 
    ISSN: 1573-6857
    Keywords: neutral theory ; slightly deleterious ; evolution ; mutations ; mitochondrial DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A simple neutral model predicts that the ratio of non-synonymous to synonymous fixed differences between species will be the same as the ratio of non-synonymous to synonymous polymorphisms within species. This prediction is tested with existing mitochondrial datasets from 25 animal species. In slightly over half of the studies, the ratio of replacement to silent polymorphisms within species is significantly greater than the ratio of replacement to silent fixed differences between species. These observations are best explained by a substantial number of mildly deleterious amino acid mutations that contribute to heterozygosity but rarely become fixed.
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  • 191
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    Genetica 102-103 (1998), S. 229-239 
    ISSN: 1573-6857
    Keywords: evolution ; fertility ; natural selection ; population genetics ; viability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A theoretical analysis was carried out on the mutation load observed in long-maintained inbred lines from two experiments with Drosophila and mice. The rate of decline in fitness and its sampling distribution were predicted for both experiments using Monte Carlo simulation with a range of mutational parameters and models. The predicted rates of change in fitness were compared to the empirical observed rates, which were close to zero. The classical hypothesis of many deleterious mutations (about one event per genome per generation) of small effect (1–2%) resulting in a mutation pressure for fitness of about 1% per generation is incompatible with the data. Recent estimates suggesting an overall mutation pressure for fitness traits of about 0.1% are, however, compatible with the observed load.
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  • 192
    ISSN: 1573-6857
    Keywords: Drosophila ; evolution ; sex chromosomes ; Y chromosome degeneration ; Y chromosome mutations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Y chromosome degeneration is characterized by structural changes in the chromosome architecture and expansion of genetic inertness along the Y chromosome. It is generally assumed that the heteromorphic sex chromosome pair has developed from a pair of homologues. Several models have been suggested. We use the unique situation of the secondary sex chromosome pair, neo-Y and neo-X (X2), in Drosophila miranda to analyze molecular mechanisms involved in the evolutionary processes of Y chromosome degeneration. Due to the fusion of one of the autosomes to the Y chromosome (about 2 Mya), a neo-Y chromosome and a neo-X chromosome, designated X2, were formed. Thus, formerly autosomal genes are inherited now on a pair of sex chromosomes in D. miranda. Analyzing DNA sequences from the X2 and neo-Y region, we observed a massive accumulation of DNA insertions on the neo-Y chromosome. From the analysis of several insertion elements, we present compelling evidence that the first step in Y chromosome degeneration is driven by the accumulation of transposable elements, especially retrotransposons. An enrichment of these elements along an evolving Y chromosome could account for the switch from a euchromatic into a heterochromatic chromatin structure.
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  • 193
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    Journal of bioenergetics and biomembranes 30 (1998), S. 15-24 
    ISSN: 1573-6881
    Keywords: Cytochrome oxidase ; nitric oxide reductase ; respiration ; denitrification ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Physics
    Notes: Abstract Nitric oxide reductase (NOR) is a key enzyme in denitrification, reforming the N–N bond (making N2O from two NO molecules) in the nitrogen cycle. It is a cytochrome bc complex which has apparently only two subunits, NorB and NorC. It contains two low-spin cytochromes (c and b), and a high-spin cytochrome b which forms a binuclear center with a non-heme iron. NorC contains the c-type heme and NorB can be predicted to bind the other metal centers. NorB is homologous to the major subunit of the heme/copper cytochrome oxidases, and NOR thus belongs to the superfamily, although it has an Fe/Fe active site rather than an Fe/Cu binuclear center and a different catalytic activity. Current evidence suggests that NOR is not a proton pump, and that the protons consumed in NO reduction are not taken from the cytoplasmic side of the membrane. Therefore, the comparison between structural and functional properties of NOR and cytochrome c- and quinol-oxidizing enzymes which function as proton pumps may help us to understand the mechanism of the latter. This review is a brief summary of the current knowledge on molecular biology, structure, and bioenergetics of NOR as a member of the oxidase superfamily.
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  • 194
    ISSN: 1573-7055
    Keywords: Artiodactyla ; hippopotamuses ; Cetacea ; morphology ; cytochrome b ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A character analysis of selected conservative morphological traits from extant and fossil artiodactyls and cetaceans was combined with a similar analysis of conservative nucleotide positions from the complete mitochondrial cytochrome b sequences of available extant artiodactyls, cetaceans, sirenians, perissodactyls, and other mammals. This combined analysis focuses on the evidence that supports conflicting hypotheses of artiodactyl monophyly, including the affinities of hippopotamids and the monophyly or paraphyly of odontocete cetaceans. Highly conserved morphological traits of the astragalus and deciduous dentition provide strong corroboration of artiodactyl monophyly, including extant and fossil hippopotamids. In contrast, cytochrome b gene sequences are incapable of confirming this monophyly, due to excessive homoplasy of nucleotide and amino acid traits within extant Eutheria. In like manner, highly conserved and uniquely derived morphological features of the skull and auditory regions provide robust corroboration of Odontoceti monophyly, including extant and fossil physeteroids. Several nucleotide similarities do exist between physeteroids and mysticetes; however, most are either silent third-position transversions or occur also in two or more odontocete families. We suggest that increased taxon sampling, combined with functional considerations of amino acids and their secondary structure in protein-coding genes, are essential requirements for the phylogenetic interpretations of molecules at higher taxonomic levels, especially when they conflict with well-supported hypotheses of mammalian phylogeny, corroborated by uniquely derived morphological traits from extant and fossil taxa.
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  • 195
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    Journal of mammalian evolution 5 (1998), S. 65-93 
    ISSN: 1573-7055
    Keywords: Multituberculata ; inner ear ; cochlea ; semicircular canals ; hearing ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The inner ear of the Late Cretaceous multituberculates Nemegtbaatar gobiensis and Chulsan-baatar vulgaris is described from serial sections and enlarged models. The size and proportions of the inner ear as a whole are as expected for extant small mammals. The lengths of the cochlea (Nemegtbaatar gobiensis, 3.0 mm, Chulsanbaatar vulgaris, 2.0 mm) are comparable to those of other multituberculates, when ratios of length of the cochlea to skull length are calculated. The vestibule is not as expanded in the two taxa as in Lambdopsalis, ?Meniscoessus, and ?Catopsalis; the estimated volume for Nemegtbaatar gobiensis is 9 mm3. A slightly laterally curved, anteriomedially directed cochlea, relatively robust ear ossicles, and the estimations of the area of the tympanic membrane and stapedial footplate in Chulsanbaatar suggest high-frequency hearing but a relatively low sensitivity to low-decibel sounds. The semicircular canals of Nemegtbaatar and Chulsanbaatar are fully developed; the size of the anterior, posterior, and lateral canals and their angles and proportions are comparable to those of extant mammals of similar size. The anterior semicircular canal of Nemegtbaatar forms a smooth half-circle and thus is more derived than the angular canal of Ornithorhynchus. The notable differences between the ratio of the width of the lateral semicircular canal to skull length and the size of the vestibule in Nemegtbaatar and the Paleocene multituberculate Lambdopsalis bulla are probably related to different modes of life.
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  • 196
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    Journal of clinical monitoring and computing 14 (1998), S. 421-424 
    ISSN: 1573-2614
    Keywords: Automated record keeper ; evolution ; management of risk ; object-oriented
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science , Medicine
    Notes: Abstract In the course of five years the development of an automated anesthesia record keeper has evolved through nearly a dozen stages, each marked by new features and sophistication. Commodity PC hardware and software minimized development costs. Object oriented analysis, programming and design supported the process of change. In addition, we developed an evolutionary strategy that optimized motivation, risk management, and maximized return on investment. Besides providing record keeping services, the system supports educational and research activities and through a flexible plotting paradigm, supports each anesthesiologist's focus on physiological data during and after anesthesia.
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  • 197
    ISSN: 1572-9699
    Keywords: cell size ; competition ; evolution ; fitness ; nutrient specificity ; selection
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract An important problem in microbial ecology is to identify those phenotypic attributes that are responsible for competitive fitness in a particular environment. Thousands of papers have been published on the physiology, biochemistry, and molecular genetics of Escherichia coli and other bacterial models. Nonetheless, little is known about what makes one genotype a better competitor than another even in such well studied systems. Here, we review experiments to identify the phenotypic bases of improved competitive fitness in twelve E. coli populations that evolved for thousands of generations in a defined environment, in which glucose was the limiting substrate. After 10000 generations, the average fitness of the derived genotypes had increased by ∼ 50% relative to the ancestor, based on competition experiments using marked strains in the same environment. The growth kinetics of the ancestral and derived genotypes showed that the latter have a shorter lag phase upon transfer into fresh medium and a higher maximum growth rate. Competition experiments were also performed in environments where other substrates were substituted for glucose. The derived genotypes are generally more fit in competition for those substrates that use the same mechanism of transport as glucose, which suggests that enhanced transport was an important target of natural selection in the evolutionary environment. All of the derived genotypes produce much larger cells than does the ancestor, even when both types are forced to grow at the same rate. Some, but not all, of the derived genotypes also have greatly elevated mutation rates. Efforts are now underway to identify the genetic changes that underlie those phenotypic changes, especially substrate specificity and elevated mutation rate, for which there are good candidate loci. Identification and subsequent manipulation of these genes may provide new insights into the reproducibility of adaptive evolution, the importance of co-adapted gene complexes, and the extent to which distinct phenotypes (e.g., substrate specificity and cell size) are affected by the same mutations.
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  • 198
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    Methods in cell science 20 (1998), S. 203-207 
    ISSN: 1573-0603
    Keywords: Endocarditis ; Rat ; Streptococci
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The rat model of endocarditis is a well established experimental protocol which closely approximates human native valve endocarditis. The rat model of endocarditis has been used to examine the role of particular streptococcal virulence factors, to assess immunoprotective strategies, and to evaluate the efficacy of selected antibiotic treatment regimens for streptococcal endocarditis. Like humans, rats are generally susceptible to endocarditis only if the cardiac valves have been damaged. In the rat model of endocarditis, damage to the aortic valve and sterile vegetation formation is accomplished by insertion of a polyethylene catheter through the carotid artery into the left ventricle. Following catheter insertion, an inoculum of streptococci are injected intravenously. Vegetations removed from the heart valves during thoracotomy of euthanized animals are qualitatively cultured for streptococcal infection. The method, including investigator safety considerations, is described in detail.
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  • 199
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    Genetic resources and crop evolution 45 (1998), S. 383-388 
    ISSN: 1573-5109
    Keywords: arcelin ; common bean ; evolution ; lectin-related genes ; lectin-related proteins ; Phaseolus genus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Arcelins are lectin-related proteins detected only in wild beans collected in Mexico and their presence has been related to resistance against the bean weevils. Six arcelin variants have been described and the gene sequence of four of them was determined. We have isolated and sequenced a cDNA clone encoding arcelin 6. Sequence data indicated that this protein is closely related to arcelin 1 and arcelin 2. The cluster dendrogram produced with the multiple alignment of the cDNA clones coding for arcelins showed that arcelins can be divided into three subgroups: i) arcelin 1, arcelin 2 and arcelin 6, ii) arcelin 4 and iii) arcelin 5a and arcelin 5b. Biochemical data indicate that arcelin 3 belongs to the same subgroup of arcelin 4. Southern blot analysis of genomic DNA yielded similar restriction patterns among members of each subgroup, confirming the results obtained with the multiple alignment. Furthermore, the hybridisation patterns were specific for each arcelin variant. On the basis of these evidences, we suggest that the lectin locus could be a useful tool for understanding evolutionary relationships in common bean and in the genus Phaseolus.
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  • 200
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    Genetic resources and crop evolution 45 (1998), S. 119-126 
    ISSN: 1573-5109
    Keywords: Arachis hypogaea ; DNA markers ; molecular polymorphism ; variation ; origin ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Recent studies on the genus Arachis using molecular markers have revealed very little demonstrable polymorphism in the cultivated groundnut, A. hypogaea. This has led to the hasty generalization that the groundnut lacks genetic variation. However, this is in complete contradiction to the results of other lines of investigations into the origin and evolution of A. hypogaea. Further, a characterization of the world collection for various traits also shows significant levels of variation for almost all genetic traits. The literature review in this article suggests that the lack of genetic variation was inferred because of an inadequacy in the material studied, and the range of techniques used to study molecular polymorphism. A comprehensive and rigorous examination of the material available in the groundnut world collection, either by improving current techniques, or by using such advanced techniques as SSRs and AFLP could well reveal polymorphism at the molecular level.
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