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  • Articles  (56)
  • RAPD  (29)
  • phosphorus  (17)
  • Animals
  • Chemical Engineering
  • Zea mays
  • 2000-2004  (56)
  • Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition  (56)
  • 1
    Electronic Resource
    Electronic Resource
    Effect of maize root mucilage on phosphate adsorption and exchangeability on a synthetic ferrihydrite (2000)
    Springer
    Biology and fertility of soils 31 (2000), S. 525-532 
    Details
    ISSN: 1432-0789
    Keywords: Key words Ferrihydrite ; Phosphate ; Polygalacturonic acid ; Root mucilage ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  This study was conducted to determine the influence of root mucilage (RM) from Zea mays, polygalacturonic acid (PGA), and galacturonic acid (GA), on the adsorption, desorption, and exchangeability of orthophosphate (P) on a synthetic ferrihydrite in deionized water. The adsorption rate and affinity on the oxide decreased in the order P〉GA〉PGA≥RM. The results suggest that P and GA were adsorbed by ligand exchange on Fe-OH surface sites, while RM and PGA might in addition also be adsorbed by hydrogen and van der Waals bonds to the oxide surface. Whereas P and GA could be adsorbed at sites located inside the micropores of ferrihydrite aggregates, PGA and RM probably remained on the external surfaces because of their large molecular weight. The preliminary adsorption of organic compounds decreased the subsequent P adsorption. The larger decrease of P adsorption occurred when dry ferrihydrite powder was directly added to the RM/water suspension. This effect was due to the flocculation of ferrihydrite aggregates, which limited the transport of P to the adsorption sites. Preliminary adsorption of GA also decreased P adsorption, because both compounds competed for the same Fe-OH sites. The ability of the organic compounds to desorb P from the ferrihydrite was not very pronounced and decreased in the order GA〉PGA≥RM. The preliminary adsorption of organic compounds on the oxide resulted in an increase in isotopically exchangeable P in 300 min compared to the treatment without organic compounds. However, because of its higher affinity for the oxide surface, P exchangeability was not modified when P was added before the organic compounds.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740000206
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  • 2
    Electronic Resource
    Electronic Resource
    Tithonia diversifolia as a green manure for soil fertility improvement in western Kenya: A review (2000)
    Springer
    Agroforestry systems 49 (2000), S. 201-221 
    Details
    ISSN: 1572-9680
    Keywords: biomass transfer ; integrated nutrient management ; nitrogen ; nutrient cycling ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Tithonia diversifolia, a shrub in the family Asteraceae, is widely distributed along farm boundaries in the humid and subhumid tropics of Africa. Green biomass of tithonia has been recognized as an effective source of nutrients for lowland rice (Oryza sativa) in Asia and more recently for maize (Zea mays) and vegetables in eastern and southern Africa. This paper reviews the potential of tithonia green biomass for soil fertility improvement based on recent research in western Kenya. Green leaf biomass of tithonia is high in nutrients, averaging about 3.5% N, 0.37% P and 4.1% K on a dry matter basis. Boundary hedges of sole tithonia can produce about 1 kg biomass (tender stems + leaves) m−1 yr−1 on a dry weight basis. Tithonia biomass decomposes rapidly after application to soil, and incorporated biomass can be an effective source of N, P and K for crops. In some cases, maize yields were even higher with incorporation of tithonia biomass than with commercial mineral fertilizer at equivalent rates of N, P and K. In addition to providing nutrients, tithonia incorporated at 5 t dry matter ha−1 can reduce P sorption and increase soil microbial biomass. Because of high labor requirements for cutting and carrying the biomass to fields, the use of tithonia biomass as a nutrient source is more profitable with high-value crops such as vegetables than with relatively low-valued maize. The transfer of tithonia biomass to fields constitutes the redistribution of nutrients within the landscape rather than a net input of nutrients. External inputs of nutrients would eventually be required to sustain production of tithonia when biomass is continually cut and transferred to agricultural land.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1006339025728
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  • 3
    Electronic Resource
    Electronic Resource
    Identification of Meloidogyne chitwoodi, M. fallax and M. hapla Based on SCAR-PCR: A Powerful Way of Enabling Reliable Identification of Populations or Individuals that Share Common Traits (2000)
    Springer
    European journal of plant pathology 106 (2000), S. 283-290 
    Details
    ISSN: 1573-8469
    Keywords: diagnostics ; RAPD ; root-knot nematodes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract This study describes the development of species-specific pairs of PCR primers for the root-knot nematodes Meloidogyne chitwoodi, M. fallax and M. hapla that amplify species-specific RAPD fragments. After sequencing the fragments, longer primers were designed to complement the terminal sequences of the polymorphic DNA fragments. The resulting pairs of primers were used to generate the sequence-characterized amplified regions (SCARs). Using the developed pairs of SCAR primers, SCAR fragments of M. chitwoodi, M. fallax or M. hapla were easily amplified from DNA extracts from juveniles, egg masses, females of the particular nematode species investigated, either present alone, in a mixture with other nematode species or in infested plant material. A specially designed multiplex assay using three pairs of SCAR primers enabled the identification of multiple species in a mixture in a single PCR step. Single juveniles were easily identified by applying this multiplex assay followed by a subsequent multiplex PCR using three pairs of nested primers. The SCAR-PCR-based assays described have potential to be optimized for routine practical diagnostic tests. The usefulness of converting RAPD markers into SCAR markers is discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008765303364
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  • 4
    Electronic Resource
    Electronic Resource
    Land use affects the distribution of soil inorganic nitrogen in smallholder production systems in Kenya (2000)
    Springer
    Biology and fertility of soils 31 (2000), S. 348-355 
    Details
    ISSN: 1432-0789
    Keywords: Key words Agroforestry ; Land use ; Nitrate leaching ; Zea mays ; Musa spp.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  We hypothesized that the integration of trees and shrubs in agricultural landscapes can reduce NO3 – leaching and increase utilization of subsoil N. A field survey was conducted on 14 farms on acid soils in the subhumid highlands of Kenya, where there is little use of fertilizers, to determine the effect of vegetation types (VT) on soil NH4 + and NO3 – to 4 m depth. The VT included maize (Zea mays) with poor growth and good growth, Markhamia lutea trees scattered in maize, natural weed fallow, banana (Musa spp.), hedgerow, and eucalyptus woodlot. The effect of VT on NH4 + was small (〈1 mg N kg–1). NO3 – within a VT was about constant with depth below 0.25 m, but subsoil NO3 – varied greatly among VT. Mean NO3 –-N concentrations at 0.5–4 m depth were low beneath hedgerow and woodlot (〈0.2 mg kg–1), intermediate beneath weed fallow (0.2–0.7 mg kg–1), banana (0.5–1.0 mg kg–1) and markhamia (0.5–1.6 mg kg–1), and high beneath both poor (1.0–2.1 mg kg–1) and good (1.9–3.1 mg kg–1) maize. Subsoil NO3 – (0.5–4 m) was agronomically significant after maize harvest with 37 kg N ha–1 m–1 depth of subsoil beneath good maize and 27 kg N ha–1 m–1 depth beneath poor maize. In contrast, subsoil NO3 – was only 2 kg N ha–1 m–1 depth beneath woodlot and hedgerow. These results demonstrate that the integration of perennial vegetation and the rotation of annual and perennial crops can tighten N cycling in agricultural landscapes.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740050667
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  • 5
    Electronic Resource
    Electronic Resource
    Multiphasic Approach for the Identification of the Different Classification Levels Of Pseudomonas savastanoi Pv. Phaseolicola (2000)
    Springer
    European journal of plant pathology 106 (2000), S. 715-734 
    Details
    ISSN: 1573-8469
    Keywords: PCR ; Phaseolus vulgaris ; phenotypic characters ; RAPD ; rep-PCR ; serology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The relationships between strains of Pseudomonas savastanoi pv. phaseolicola (P. sav. phaseolicola), P. syringae pv. tabaci (P. syr. tabaci) and P. syr. syringae which all cause disease on bean; the related species P. sav. glycinea and P. syr. actinidiae, and reference bacteria, were evaluated by studying the phenotypic and genetic diversity of a collection of 62 strains. All the P. sav. phaseolicola strains tested produced characteristic watersoaked lesions on bean pods. Other pathovars produced varying combinations of symptoms including necrotic lesions, with or without watersoaked centres and sunken tissue collapse of the lesion (P. syr. tabaci) and necrotic lesions with or without sunken collapse (P. syr. syringae). At the genomospecies level, all the strains of P. sav. phaseolicola, P. sav. glycinea and P. syr. tabaci, belonging to genomospecies 2, could be separated from P. syr. syringae strains (genomospecies 1) and P. syr. actinidiae strains (unknown genomospecies) by BOX-PCR and DNA/DNA hybridisation. To distinguish P. sav. phaseolicola, within genomospecies 2, from P. sav. glycinea and P. syr. tabaci, it was necessary to perform nutritional characterisations myo-inositol negative and p-hydroxy benzoate positive for P. sav. phaseolicola strains), PCR with specific primers designed from the tox region (positive for all of the P. sav. phaseolicola strains) and serotyping, as 71% of the P. sav. phaseolicola strains reacted as O-serogroup PHA1. Important intrapathovar variation was seen by genomic fingerprinting with REP and ERIC primers, as well as with RAPD primers (AE7 and AE10) and esterase profilings. While RAPD fingerprinting detected variability correlated with two race-associated evolutionary lines, REP, ERIC and esterase profiles revealed intrapathovar variation linked to some host origins, that separated the kudzu isolates, and the mungbean isolates, from the other P. sav. phaseolicola strains.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1026563831461
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  • 6
    Electronic Resource
    Electronic Resource
    Specific Oligonucleotide Primers for the Rapid Identification and Detection of the Agent of Tomato Pith Necrosis, Pseudomonas corrugata, by PCR Amplification: Evidence for two Distinct Genomic Groups (2000)
    Springer
    European journal of plant pathology 106 (2000), S. 753-762 
    Details
    ISSN: 1573-8469
    Keywords: phytopathogenic bacteria ; diagnosis ; RAPD ; multiplex PCR
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Unique DNA bands from strains representative of two groups of Pseudomonas corrugata, as shown by amplification of their genomic DNA by polymerase chain reaction using short random sequence oligonucleotide primers (RAPD-PCR), were isolated, cloned and sequenced. Two pairs of specific primer sequences, based on the ends of the cloned unique DNA bands from strains IPVCT10.3 and IPVCT8.1, were used in multiplex PCR with a range of P. corrugata strains. All strains produced one of the two specific bands, 1100 bp (from the IPVCT10.3-based primers) and 600 bp (from the IPVCT8.1-based primers), representing groups designated I and II, respectively. The primers were also tested on a wider range of Pseudomonas species, including the closely-related fluorescent Pseudomonas genomospecies FP1, FP2 and FP3: none of these bacteria produced any bands following amplification by PCR with these primers. The primer sets detected P. corrugata in tomato pith necrosis-infected plants providing a useful tool for rapid identification and epidemiological studies.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1026507423848
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  • 7
    Electronic Resource
    Electronic Resource
    Phosphorus (P) management in the ‘De Marke’ dairy farming system (2000)
    Springer
    Nutrient cycling in agroecosystems 56 (2000), S. 219-229 
    Details
    ISSN: 1573-0867
    Keywords: phosphorus ; P ; dairy farming ; systems research ; environment ; pollution ; soil fertility ; sandy soils
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In the sandy regions of the Netherlands water quality is threatened by high losses of nutrients from intensive dairy farms. About 67% (32 kg ha-1yr-1) of farm inputs of P in purchased feeds and fertilisers do not leave in milk or cattle. The Dutch government defined decreasing maximum permitted nutrient surplusses for the period 1998–2008, at 9 kg ha-1yr-1 for P. Farmers suppose that reducing the surplusses will be costly, because it limits application of slurry, which then has to be either exported or additional land has to be purchased. Moreover, farmers are worried about the impact on soil fertility and crop growth. To explore the possibilities of reducing surplusses by improved management, farming systems research is carried out at prototype farm ‘De Marke’. Results indicate that average intensive dairy farms can reduce P surplus sufficiently, without the need to buy land or to export slurry. Key factors are reductions in purchased feeds (by reduced needs per kg milk as a result of a higher milk yield per cow, less young stock and judicious feeding) and fertilisers (by improved management of ‘home-made’ manure and an increased maize area). Initially, P fertility status of the fields of ‘De Marke’ decreased, but stabilised in the seventh year at a level not restrictive to crop production.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1009814905339
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  • 8
    Electronic Resource
    Electronic Resource
    The effects of slash burning on ecosystem nutrients during the land preparation phase of shifting cultivation (2000)
    Springer
    Plant and soil 220 (2000), S. 247-260 
    Details
    ISSN: 1573-5036
    Keywords: cations ; fire ; nitrogen ; nutrients ; phosphorus ; slash-and-burn ; soil ; tropical forests
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The most commonly observed change in soil following slash-and-burn clearing of tropical forest is a short-term increase in nutrient availability. Studies of shifting cultivation commonly cite the incorporation of nutrient-rich ash from consumed aboveground biomass into soil as the reason for this change. The effects of soil heating on nutrient availability have been examined only rarely in field studies of slash-and-burn, and soil heating as a mechanism of nutrient release is most often assumed to be of minor importance in the field. Few budgets for above and belowground nutrient flux have been developed in the tropics, and a survey of results from field and laboratory studies indicates that soils are sufficiently heated during most slash-and-burn events, particularly in dry and monsoonal climates, to cause significant, even substantial release of nutrients from non-plant-available into plant-available forms in soil. Conversely, large aboveground losses of nutrients during and after burning often result in low quantities of nutrients that are released to soil. Assessing the biophysical sustainability of an agricultural practice requires detailed information about nutrient flux and loss incurred during management. To this end, current conceptual models of shifting cultivation should be revised to more accurately describe these fluxes and losses.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004741125636
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  • 9
    Electronic Resource
    Electronic Resource
    Growth analysis of maize field crops under phosphorus deficiency (2000)
    Springer
    Plant and soil 223 (2000), S. 119-132 
    Details
    ISSN: 1573-5036
    Keywords: leaf area index ; leaf elongation rate ; phosphorus ; phyllochron ; Zea mays L
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Biomass accumulation by crops depends both on light interception by leaves and on the efficiency with which the intercepted light is used to produce dry matter. Our aim was to identify which of these processes were affected for maize (Zea Mays L., cv Volga) field crops grown under phosphorus (P) deficiency, and assess their relative importance. In this paper, the effects of P deficiency on leaf appearance, leaf elongation rate, final individual leaf area and leaf senescence were studied. The experimental work was carried out in 1995–1977 on a long-term P fertilisation trial located on a sandy soil in the south-west of France. Three P fertilisation regimes have been applied since 1972: no-P (P0 treatment) and different rates of P fertiliser (P1.5:1.5 times the grain P export and P3:3 times the grain P export). These fertilisation regimes have led to contrasted levels of soil P supply, with the P0 treatment being limiting for growth. Very few differences were observed about leaf growth between the P1.5 and P3 treatments. Conversely, the leaf area index (LAI) was significantly reduced in the P0 treatment, especially during the first phases of the crop cycle (up to −60% between the 7- and 14-visible leaves). This effect gradually decreased over time. The lower LAI in P0 treatment was due to two main processes affecting the leaf growth. The final number of leaves per plant and leaf senescence were only slightly modified by P deficiency. Conversely, leaf appearance was delayed during the period between leaf 4 and leaf 9. The value of the phyllochron increased from 47 °C days in the P1.5 treatment to 65 °C days in the P0 treatment. Leaf elongation rates during the quasi-linear phase of leaf expansion were significantly reduced for lower leaves of P0 plants. The final size of leaves L2–L12 was reduced. On the opposite, leaf elongation duration was not greatly affected by P treatments. Before the emergence of leaf 9, the reduction of individual leaf size was the main factor responsible for the reduced LAI in the P0 treatment. After this stage, the delayed leaf appearance accounted for a great part of the reduced LAI in the P0 treatment.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004877111238
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  • 10
    Electronic Resource
    Electronic Resource
    Phosphatase activity of extra-radical arbuscular mycorrhizal hyphae: A review (2000)
    Springer
    Plant and soil 226 (2000), S. 199-210 
    Details
    ISSN: 1573-5036
    Keywords: Histochemical staining ; mineral nutrition ; phosphorus ; stress ; vital staining
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Phosphatase activity of arbuscular mycorrhizal (AM) fungi has attracted attention in three fairly distinct domains: intracellular enzymes with defined metabolic functions that have been studied in intraradical hyphae, histochemical staining of alkaline phosphatase as an indicator of fungal activity measured both intra- and extraradically, and extracellular activity related to mineralization of organic P (Po) compounds that may enhance mycorrhizal utilization of an important nutrient pool in soil. This review focuses on the latter subjects with emphasis on extraradical mycelium (ERM), while it draws on selected data from the vast material available concerning phosphatases of other organisms. We conclude that histochemical staining of alkaline phosphatase is a sensitive and suitable method for monitoring the effect of adverse conditions encountered by ERM both as a symbiotically functional entity in soil, and in vitro without modifying interference of soil or other solid substrates. Furthermore, the quantitative importance of extracellular enzymes for P nutrition of AM plants is estimated to be insignificant. This is concluded from the low quantitative contribution extracellular hyphae of AM fungi give to the total phosphatase activity in soil, and from estimations of which processes that may be rate limiting in organic P mineralization. Maximum values for the former is in the order of a few percent. As for the latter, solubilization of Po seems to be far more important than Po hydrolysis for utilization of Po by AM fungi and plants, as both endogenous soil phosphatase activity and phosphatases of other soil organisms are ubiquitous and abundant. Our discussion of mycorrhizal phosphatases supports the view that extracellular phosphatases of roots and micro-organisms are to a large extent released incidentally into soil, and that the source has limited benefit from its activity.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1026582207192
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  • 11
    Electronic Resource
    Electronic Resource
    Relationships among species of Hystrix Moench and Elymus L. assessed by RAPDs (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 191-196 
    Details
    ISSN: 1573-5109
    Keywords: Elymus ; genome ; Hystrix ; RAPD ; relationships ; specific marker ; variation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To assess the generic delimitation and the interspecific relationships between Hystrix and Elymus, three Hystrix and 10 Elymus species were used for random amplified polymorphic DNA(RAPD) assay. Of the 54 primers tested, 26 (48%) produced polymorphic products. A total of 167 products amplified from 16 primers were selected for RAPD analysis, among which 156 (93.4%) amplified products were found to be polymorphic among the 13 species. The polymorphism produced by each primer ranged from 4 to 13, with an average of 9.8. Data were used to generate Jaccard's similarity coefficients and to construct a dendrogram using UPGMA in the NTSYS computer programs. It is concluded from this study that: (1) there were clear differences between Hystrix and Elymus, which possibly suggest that Hystrix is a valid genus; (2) great diversity existed among the species of Hystrix and Elymus; (3) the species similar to each other in morphological characters were grouped together; (4) the species from neighboring geographical regions were clustered; (5) the species with the same genomes and polyploidy level were clustered together; (6) RAPD results are comparable with those obtained from studies on morphology and cytology. It is a useful additional method for assessing the relationships among genera and species in Triticeae.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008768419973
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  • 12
    Electronic Resource
    Electronic Resource
    RAPD markers efficiently distinguish heterogenous populations of wild potato (Solanum) (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 115-121 
    Details
    ISSN: 1573-5109
    Keywords: diversity ; genebank ; germplasm ; potato ; RAPD ; Solanum sucrense
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Genetic characterization of germplasm is important for setting objective guidelines for conservation. One common problem found in genebanks is determining the value of populations with insufficient or unreliable data regarding their geographic origin. In this study, a genetic analysis based on RAPD markers was conducted to characterize a `mystery' population of Solanum sucrense, a polysomic tetraploid potato (2n=4x=48), for which adequate documentation was lacking. The comparative analysis of genetic similarities between this mystery population and each one of 30 other S. sucrense populations in the genebank revealed that all populations within this species, including the mystery population, are significantly different from being duplicates, and are therefore worthy of separate conservation. RAPD markers also distinguished the mystery population from closely related tetraploid species S. oplocense, S. gourlayi and S. tuberosum ssp. andigena, suggesting that it is also not a duplicate of a population of these species. If RAPDs can clearly differentiate populations within highly heterogeneous tetraploids like S. sucrense, they should be generally useful for determining germplasm organization within potato species.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008725121904
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  • 13
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    Assessment of genetic relationships among Pyrus species and cultivars using AFLP and RAPD markers (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 257-265 
    Details
    ISSN: 1573-5109
    Keywords: AFLP ; genetic similarity ; molecular markers ; pears ; Pyrus ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Twenty-five Pyrus communis L. cultivars including eight traditional Portuguese pears, and four commercial Pyrus pyrifolia (Burm.) Nak. (Japanese pear or `nashi') cultivars were analysed by RAPD and AFLP techniques focusing on their molecular discrimination and the assessment of their genetic relatedness. Twenty-five primers generated 324 RAPD markers, among which 271 (84%) were polymorphic. The AFLP technique, using seven primer combinations, revealed a similar level of molecular polymorphisms (87%), representing 418 polymorphic bands among a total of 478 scored in autoradiographs. The high reproducibility of RAPD and AFLP techniques was confirmed comparing DNA samples from different extractions and different digestions of DNA from the same plant. Three genetic similarity matrices and respective dendrograms were elaborated on using RAPD, AFLP or joint RAPD and AFLP data. Both molecular marker techniques proved their reliability to assess genetic relationships among pear cultivars. P. pyrifolia cultivars exhibit a closer genetic relatedness, clustering apart from P. communis cultivars. Within P. communis, `William's', as well as `Doyenne du Comice', cluster close to their hybrids. Most of the Portuguese cultivars tend to cluster together, indicating to constitute a relatively independent genetic pool, which can be of interest in pear breeding programs.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008794809807
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  • 14
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    Identification of some Benin Republic's Guinea yam (Dioscorea cayenensis/Dioscorea rotundata complex) cultivars using Randomly Amplified Polymorphic DNA (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 619-625 
    Details
    ISSN: 1573-5109
    Keywords: core collection ; cultivar identification ; Dioscorea cayenensis/Dioscorea rotundata complex ; Guinea yam ; identification of duplicates ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract DNA from twenty-three late maturing cultivars of Guinea yams (D. cayenensis/D. rotundata complex) from the Benin Republic that could not be separated using isozyme markers, were examined using randomly amplified polymorphic DNA (RAPD) markers with decamer primers of arbitrary sequence. All the twelve primers tested were informative and yielded 63 amplified DNA bands from which 47 (75%) were polymorphic. Although no single primer produced polymorphic bands in all cultivars, the great majority of the cultivars were separated with the combinations of polymorphic bands generated by various primers. Putative duplicates and cultivar misclassifications were identified. Many morphologically distinct cultivars were close. The dwarf cultivar Tam-Sam considered as derived from Tabane, appeared more distant from the latter than was believed. RAPD analysis was found as a practical tool for the identification of duplicates toward establishment of an accurate core collection of Guinea yams in Benin Republic and in the other countries of the African yam belt.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1026589702426
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  • 15
    Electronic Resource
    Electronic Resource
    ATP production after pH shift in membrane vesicles from maize coleoptiles (2000)
    Springer
    Plant growth regulation 32 (2000), S. 151-155 
    Details
    ISSN: 1573-5087
    Keywords: ATP production ; ATPase ; auxin ; membrane vesicles ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Microsomal membrane vesicles and purified plasma membranevesicles obtained from coleoptiles of maize (Zea mays L.) weresubjected to pH shifts from pH 7.8 to 4.7. In the presence of ATPaseinhibitors such as vanadate, net accumulation of radiolabelled butyricand indole-3-acetic acid (IAA) remained higher than in controls. When 2min after the pH shift, at 4°C, the microsomal vesicles weredenatured the amount of ATP could be determined using theluciferin/luciferase assay. Significantly increased ATP production overcontrol values – no pH-shift or ionophore treatment – wasfound. Therefore, such vesicles might produce ATP for in vitrotransport processes such as auxin efflux.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1010797326939
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  • 16
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    Electronic Resource
    Stock-type patterns of phosphorus uptake, retranslocation, net photosynthesis and morphological development in interior spruce seedlings (2000)
    Springer
    New forests 19 (2000), S. 27-49 
    Details
    ISSN: 1573-5095
    Keywords: Picea glauca (Moench) Voss × Picea engelmannii Parry ; phosphorus ; phosphorus-use efficiency ; retranslocation ; specific absorption rate ; spring-stock ; stock-type ; summer-stock
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract One-year-old interior spruce (Picea glauca (Moench) Voss × Picea engelmannii Parry) spring-stock and summer-stock were grown under two phosphorus (P) fertility regimes, with (+P) or without (−P), followed by a simulated winter, and a second growing period under an adequate fertility regime in a controlled environment room. The two stock-types differed in their response to low P availability. For spring-stock, morphological development, phosphorus-use efficiency (PUE) and P specific absorption rate (SAR) were similar between −P and +P seedlings. For summer-stock, −P seedlings compared to +P seedlings had lower (p ≤ 0.05) morphological development, but greater PUE and SAR. For both stock-types, P content increased in +P seedlings, remained low in −P seedlings, and P concentration decreased in nursery-needles (i.e., formed in the nursery) of −P seedlings. The difference in stock-type response to low phosphorus availability (−P) was attributed to internal supply of P and it's retranslocation. Assimilation (A) of CO2 in nursery-needles was similar between −P and +P seedlings for both stock-types. For spring-stock, +P seedlings had greater A in new-needles (i.e., needles formed during the trial) than −P seedlings. It was recommended that the spring-stock be selected over summer-stock for sites low in P availability.
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    URL: http://dx.doi.org/10.1023/A:1006618312161
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    Genetic variation of Ethiopian and Eritrean sorghum (Sorghum bicolor (L.) Moench) germplasm assessed by random amplified polymorphic DNA (RAPD) (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 471-482 
    Details
    ISSN: 1573-5109
    Keywords: cluster analysis ; genetic variation ; germplasm ; RAPD ; Sorghum bicolor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The extent and patterns of distribution of genetic variation among 80 sorghum (Sorghum bicolor (L.) Moench) germplasm accessions from Ethiopia and Eritrea were investigated using RAPD with 20 oligonucleotide primers. The primers generated a total of 147 polymorphic bands across the 80 accessions with a mean of 7.35 bands per primer. Estimation of the extent of variation by the Shannon-Weaver diversity index revealed an intermediate level of overall variation (H = 53), although the levels varied among regions of origin of the accessions. Partitioning of the total variation revealed considerable variation (77%) within the region of origin of the accessions and the remainder (23%) among regions of origin. Similarly, a large portion (94%) of the total variation was found within the adaptation zones compared to among the adaptation zones (6%). The results suggest a weak differentiation of the sorghum material both on regional and agro-ecological bases, which could be ascribed to the high rate of outcrossing in cultivated sorghum and its free natural hybridization with its wild and weedy relatives, as well as to seed movement by humans. The average genetic dissimilarity was found to be 36% among the 80 accessions and 13% among the 15 regions of origin. Cluster analysis failed to group accessions of the same region or the same adaptation zone, which further confirmed the weak differentiation of the material studied. The clustering pattern of the regions of origin was broadly concordant with previous clustering patterns obtained using morphological characters, in which regions with broad agro-climatic conditions were grouped together.
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    URL: http://dx.doi.org/10.1023/A:1008751721825
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  • 18
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    Molecular markers in some medicinal plants of the Apiaceae family (2000)
    Springer
    Euphytica 114 (2000), S. 87-91 
    Details
    ISSN: 1573-5060
    Keywords: Angelica ; Bupleurum ; intergenic transcribed sequences ; Peucedanum ; phylogeny ; RAPD ; Umbelliferae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The internal transcribed spacers ITS1 and ITS2 in the18S-5.8S-26S rDNA repeat units were amplified and cloned from Angelica gigas Nakai, Angelica acutiloba (Siebold & Zucc.) Kitagawa, A. dahurica Maxim, Angelica decursiva (Miq.) Franch. & Savat, Bupleurum falcatum L. and Peucedanum japonicum Thunb. Sequence analyses showed that ITS1 is approx. 215 bp, the 5.8S gene is 162 bp and the ITS2 approx. 221 bp in all six species. The sequences are deposited at the EMBL Nucleotide Database. By including these new sequences in the Apiaceae phylogenetic tree, a third branch consisting of P. japonicum, A. gigas, P. decursivum and A. decursiva is added to theAngelica clade. Peucedanum does not forma distinct branch. The sequence obtained from Angelica dahurica collected in S. Korea is identical to that reported for the same species originating from China. A Bupleurum clade of three species was added to the tree showing closer relationship to theDaucus Laserpitium clade than the Angelica clade. RAPD analysis of all six species showed that the 10-base primer OPC-17 only, out of the20 Kit-C primers from Operon gave polymorphic banding patterns.
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    URL: http://dx.doi.org/10.1023/A:1003919416122
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    Assessment of genetic relationships in Mentha species (2000)
    Springer
    Euphytica 111 (2000), S. 121-125 
    Details
    ISSN: 1573-5060
    Keywords: DNA fingerprinting ; Mentha ; phylogenetic tree ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A set of 60 random primers was used to analyse 11accessions from six taxa of Mentha developed byCIMAP. These accessions were maintained in the nationalgene bank for medicinal and aromatic plants at CIMAP.A total of 630 bands could be detected as amplifiedproducts upon PCR amplification, out of which 589 werepolymorphic (93.5%). Further analysis of these RAPDprofiles for band similarity indices clearlydifferentiated five of the Mentha arvensis L.accessions from the rest. Among two accessions of Mentha spicata L. CIMAP/C33 could bedistinguished from CIMAP/C32. Mentha × gracilis Sole cv. cardiaca showed a muchhigher similarity with Mentha spicata L. as wellas Mentha arvensis L. which amongst themselvesshowed rather a greater distance indicating that Mentha × gracilis Sole cv. cardiaca might have evolved as a natural hybridbetween M arvensis L. and M. spicataL. In terms of uniqueness of amplified bands fordeveloping RAPD markers, it was observed that at taxalevel 298 bands were unique to one of the six taxa,singly amounting to 47.3% of total amplifiedfragments. Primers MAP 10 and 17 produced polymorphismonly in case of M. spicata L. and Menthaspicata L. cv. viridis while MAP 08 producedpolymorphic bands in all 4 other species than thesetwo. Similarly unique patterns were observeddifferentiating all six species and could be used asRAPD markers for differentiating Mentha species.
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    URL: http://dx.doi.org/10.1023/A:1003829512956
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  • 20
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    Effectiveness of different classes of molecular marker for classifying and revealing variation in rice (Oryza sativa) germplasm (2000)
    Springer
    Euphytica 112 (2000), S. 275-284 
    Details
    ISSN: 1573-5060
    Keywords: AFLP ; isozyme ; ISSR ; molecular marker ; RAPD ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We have examined the effectiveness of similar numbers of markers from four molecular marker systems (AFLP, isozymes, ISSR and RAPD) for revealing genetic diversity and discriminating between infraspecific groups of Oryza sativa germplasm. Each marker system classifies the germplasm into three major groups (most effectively with isozymes and AFLPs), but with differences (primarily with ISSR) between the precise classifications generated. However, at the highest levels of genetic similarity there was only partial agreement as to relationships between individual accessions when different markers were used. When variance was partitioned among and within the three subspecific groups, although the differences were not significant, greater variation was found among than within groups using AFLP and isozymes, with the reverse for RAPD and ISSR. Measurement of polymorphism using average heterozygosity and effective number of alleles gave similar results for each marker system. These results are discussed in relation to various genetic resources conservation activities, and the advisability of extrapolating to other sets of germplasm particularly of other crop species.
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    URL: http://dx.doi.org/10.1023/A:1003952720758
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  • 21
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    Linkage of random amplified polymorphic DNA markers to downy mildew resistance in cucumber (Cucumis sativus L.) (2000)
    Springer
    Euphytica 115 (2000), S. 105-113 
    Details
    ISSN: 1573-5060
    Keywords: genetic markers ; marker-assisted selection ; multiple location analysis ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Marker assisted selection (MAS) may improve the efficiency of breeding downy mildew resistant cucumber cultivars. A study was conducted to identify random amplified polymorphic DNA (RAPD) markers linked to the downy mildew resistance gene (dm) which would be suitable for MAS. A total of 145 F3 families from two populations (55 from the WI 1983G × Straight 8 population and 90 from the Zudm1 × Straight 8 population) were evaluated over five locations in North America and Europe. Resistant and susceptible F3 families were identified and mean family resistance ratings were used to type individual F2 plants. No evidence for race differences in the pathogen (Psuedoperonospora cubensis (Berk. & Curt.) Rostow) between North America and Europe was found. Phenotypic correlations between locations ranged from 0.3 to 0.7. Of the 135 polymorphic RAPD markers identified from 960 primers, five were linked to dm - G14800, X151100, AS5800, BC5191100, and BC5261000. In the WI 1983G × Straight 8 population, G14800 was linked to dm at 16.5 cm, AS5800 at 32.8 cm, BC5191100 at 9.9 cm, and BC5261000 at 19.2 cm. In the Zudm1 ×Straight 8 population, G14800 was linked at 20.9 cm, X151100at 14.8 cm, AS5800 at 24.8 cm, and BC526_1000 at 32.9 cm. MarkersG14800 and BC5191100 were linked in repulsion to the dm allele, and X151100, AS5800, and BC5261000 were linked in coupling phase. These genetic markers may be exploited to develop an efficient MAS strategy for breeding resistant cucumber cultivars.
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    URL: http://dx.doi.org/10.1023/A:1003942228323
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  • 22
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    Accumulation of zeatin O-glycosyltransferase in Phaseolus vulgaris and Zea mays following cold stress (2000)
    Springer
    Plant growth regulation 32 (2000), S. 295-305 
    Details
    ISSN: 1573-5087
    Keywords: Cold stress ; Immunolocalization ; Phaseolus vulgaris ; Zeatin O-glycosyltransferase ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Zeatin O-glycosides have been reported as inactive and stable storage forms of cytokinins whose concentrations increase in cold stressed plants. Zeatin O-glycosides accumulation in developing bean seeds has been correlated with an increase of zeatin O-glycosyltransferase , which is specific to trans-zeatin, and catalyzes the conjugation of zeatin O-glycosides. When Phaseolus vulgaris and Zea mays seedlings were grown for 3 days at 25 and then incubated at 4 or 10 for 6 days no further growth was observed in roots. Hypertrophy was observed in the root tips of both species. In shoot-hypocotyl complexes, in contrast, growth occurred when seedlings were incubated at 10 . Western analysis, with Mabs specific to zeatin O-glycosyltransferase, detected antigenically related proteins in roots, shoot tips and cotyledons after seedlings were cold stressed for 1–6 days at 4 or 10 . Immunolocalization, of both maize and bean root sections grown at 25 revealed antigenically related proteins that were detected at low levels in cortical cells. The signal intensified upon cold stress. The localization of zeatin O-glycosyltransferase in Z. mays root tips was directly comparable to the distribution of the zeatin O-glycosides. The enzyme was detected in the nucleus, cytoplasm, and closely associated with the plasma membrane and in the cell wall of Z. mays root cells. Southern analysis suggested that more than one gene in Z. mays that were homologous to zeatin O-glycosyltransferase in P. vulgaris. Zeatin O-glycosyltransferase may be involved in modulation of cytokinins under cold stress.
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    URL: http://dx.doi.org/10.1023/A:1010755901072
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    Indole-3-butyric acid in plant growth and development (2000)
    Springer
    Plant growth regulation 32 (2000), S. 219-230 
    Details
    ISSN: 1573-5087
    Keywords: Arabidopsis thaliana ; arbuscular mycorrhiza ; biosynthesis ; indole-3-acetic acid ; indole-3-butyric acid ; regulation ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Within the last ten years it has been established by GC-MS thatindole-3-butyric acid (IBA) is an endogenous compound in a variety ofplant species. When applied exogenously, IBA has a variety of differenteffects on plant growth and development, but the compound is stillmainly used for the induction of adventitious roots. Using moleculartechniques, several genes have been isolated that are induced duringadventitious root formation by IBA. The biosynthesis of IBA in maize(Zea mays L.) involves IAA as the direct precursor. Microsomalmembranes from maize are able to convert IAA to IBA using ATP andacetyl-CoA as cofactors. The enzyme catalyzing this reaction wascharacterized from maize seedlings and partially purified. The invitro biosynthesis of IBA seems to be regulated by several externaland internal factors: i) Microsomal membranes from light-grownmaize seedlings directly synthesize IBA, whereas microsomal membranesfrom dark-grown maize plants release an as yet unknown reaction product,which is converted to IBA in a second step. ii) Drought and osmoticstress increase the biosynthesis of IBA maybe via the increaseof endogenous ABA, because application of ABA also results in elevatedlevels of IBA. iii) IBA synthesis is specifically increased byherbicides of the sethoxydim group. iv) IBA and IBA synthesizingactivity are enhanced during the colonization of maize roots with themycorrhizal fungus Glomus intraradices. The role of IBA forcertain developmental processes in plants is discussed and somearguments presented that IBA is per se an auxin and does notact via the conversion to IAA.
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    URL: http://dx.doi.org/10.1023/A:1010746806891
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    RAPD variation in wild, weedy and cultivated azuki beans in Asia (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 603-610 
    Details
    ISSN: 1573-5109
    Keywords: azuki bean ; domestication ; RAPD ; wild ancestor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract RAPD (Random Amplified Polymorphic DNA) variation was assessed in 42 accessions of azuki bean (Vigna angularis) including wild, weedy and cultivated races and in three accessions of two related species used as outgroups. A much lower level of genetic variation was observed in cultivated and weedy azuki beans compared to wild azuki bean. Wild azuki bean (V. angularis var. nipponensis) has relatively high genetic variation in subtropical highlands of Asia compared to the Far East. Although cultivated azuki bean has low RAPD variation, accessions from subtropical highlands and Southeast Asia showed different RAPD features compared to those of the Far East. It is hypothesized that the cultivated azuki bean has been derived from wild azuki bean in the Far East; the high variation in wild azuki bean has been created through its natural dissemination; and the relatively low variation in cultivated azuki bean has come about through human dissemination after genetic bottleneck reduced by domestication. In addition, high genetic diversity in wild azuki bean in subtropical highlands of Asia is regarded as an important genetic resource in azuki improvement.
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    URL: http://dx.doi.org/10.1023/A:1026584824584
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  • 25
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    Uptake of P from apatite by Pinus sylvestris seedlings colonised by different ectomycorrhizal fungi (2000)
    Springer
    Plant and soil 218 (2000), S. 249-256 
    Details
    ISSN: 1573-5036
    Keywords: ectomycorrhiza ; phosphorus ; Paxillus ; Suillus ; weathering ; ergosterol
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The role of ectomycorrhizal (EM) fungi in increasing apatite dissolution was tested in a pot system with Pinus sylvestris (L.) seedlings growing in a sand/peat mixture. Non-mycorrhizal seedlings and seedlings inoculated with one of three different isolates of EM fungi were grown for 210 days in pots divided into a root-containing and a root-free compartment. The EM mycelium was allowed to colonise the root-free compartment, to which apatite had been added as a P source in half of the pots. All mineral nutrients except P were supplied in the form of a balanced nutrient solution. Seedlings grown with apatite as their P source grew significantly better and had higher P concentrations (1.1–1.5 mg/g) compared with seedlings growing without any P source (0.6–1.0 mg/g), indicating that they were able to use apatite-P. A weathering budget based on P uptake indicated that 6.7–18.9 mg apatite was weathered per pot which corresponds to 0.3–0.9% of the added apatite. A similar budget based on Sr uptake indicated that the apatite weathering rate was lower (0.13-0.3%). One Suillus variegatus isolate and an unidentified fungus had a significant positive influence on the dissolution of apatite, while another S. variegatus isolate had colonised roots poorly and did not influence weathering significantly. Oxalic acid was detected in root-free soil and was especially abundant in compartments colonised by S. variegatus. The concentration of oxalic acid was correlated to the concentration of phosphate in the soil solution of root-free soil, indicating that oxalic acid influences apatite dissolution.
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    URL: http://dx.doi.org/10.1023/A:1014936217105
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    Temporal changes in C, P and N concentrations in soil solution following application of synthetic sheep urine to a soil under grass (2000)
    Springer
    Plant and soil 222 (2000), S. 1-13 
    Details
    ISSN: 1573-5036
    Keywords: carbon ; defoliation ; nitrogen ; phosphorus ; sheep urine ; soil solution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We have determined the temporal changes in the concentration of dissolved organic carbon (DOC) and P and N components in soil solution following application of synthetic sheep urine (500 kg N ha-1) to a brown forest soil in boxes sown with Agrostis capillaris. Three contrasting defoliation treatments (no cutting, single cut before urine application and regular cutting twice per week) plus a fallow soil were studied. The synthetic urine contained 15N labelled urea and was P-free. Intact soil cores were taken after 2, 7, 14, 21 and 56 d and centrifuged to obtain soil solution. The urea in the synthetic urine was rapidly hydrolysed in the soil, increasing soil solution pH, DOC and total dissolved phosphorus (TDP) concentrations. For the regularly defoliated sward, DOC and P reached maximum concentrations (4000 mg DOC L-1 and 59 mg TDP L-1) on day 7. From their peak values, pH and DOC and P concentrations generally decreased with time and at day 56 were near those of the control. Concentrations of NH4 + and NO3 - in the no-urine treatments fluctuated and the greatest treatment differences were between the fallow soil and the soil sown with grass. Adding synthetic urine increased NH4 + concentrations during the first week, but NO3 - concentrations decreased. This was consistent with the 15N labelling of the NO3 - pool which required 3 weeks to reach that of 15NH4 +. Dissolved organic nitrogen (DON) reached a maximum value at day 7 with a concentration of 409 mg N L-1. The DON in soil solution contained no detectable amounts of 15N label indicating that it was derived from sources in the soil. Differences in soil solution composition related to the effect of the other cutting treatments and the fallow treatment were small compared to the effect of synthetic urine addition.
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    URL: http://dx.doi.org/10.1023/A:1004799323646
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  • 27
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    Traits associated with improved P-uptake efficiency in CIMMYT's semidwarf spring bread wheat grown on an acid Andisol in Mexico (2000)
    Springer
    Plant and soil 221 (2000), S. 189-204 
    Details
    ISSN: 1573-5036
    Keywords: Andisol ; phosphatases ; phosphorus ; roots ; VA mycorrhiza ; wheat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Phosphorus deficiency is a major yield limiting constraint in wheat cultivation on acid soils. The plant factors that influence P uptake efficiency (PUPE) are mainly associated with root characteristics. This study was conducted to analyze the genotypic differences and relationships between PUPE, root length density (RLD), colonization by vesicular arbuscular and arbuscular mycorrhizal (V)AM fungi and root excretion of phosphatases in a P-deficient Andisol in the Central Mexican Highlands. Forty-two semidwarf spring-bread-wheat (Triticum aestivumL.) genotypes from CIMMYT were grown without (−P) and with P fertilization (+P), and subsequently in subsets of 30 and 22 genotypes in replicated field trials over 2 and 3 years, respectively. Acid phosphatase activity at the root surface (APASE) was analyzed in accompanying greenhouse experiments in nutrient solution. In this environment, PUPE contributed more than P utilization efficiency, in one experiment almost completely, to the variation of grain yield among genotypes. Late-flowering genotypes were higher yielding, because the postanthesis period of wheat was extended due to the cold weather at the end of the crop cycles, and postanthesis P uptake accounted for 40–45% of total P uptake. PUPE was positively correlated with the numbers of days to anthesis (at −P r=0.57 and at +P r=0.73). The RLD in the upper soil layer (0–20 cm) of the wheat germplasm tested ranged from 0.5 to 2.4 cm cm-3 at –P and 0.7 to 7.7 at +P. RLD was the most important root trait for improved P absorption, and it was positively genetically correlated with PUPE (at –P r=0.42 and at +P r=0.63) and the number of spikes m-2 (at –P r=0.58 and at +P r=0.36). RLD in the upper soil layer was more important with P fertilizer application. Without P fertilization, root proliferation in the deeper soil profile secured access to residual, native P in the deeper soil layer. (V)AM-colonisation and APASE were to a lesser degree correlated with PUPE. Among genoptypes, the level of (V)AM-colonisation ranged from 14 to 32% of the RLD in the upper soil layer, and APASE from 0.5 to 1.1 nmol s-1 plant-1 10-2.
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    Mineralization of nitrogen from crop residues and N recovery by maize inoculated with vesicular-arbuscular mycorrhizal fungi (2000)
    Springer
    Plant and soil 218 (2000), S. 11-20 
    Details
    ISSN: 1573-5036
    Keywords: Crop residues ; dry-matter yields ; Medicago sativa ; N mineralization ; 15N uptake ; Zea mays ; VAM fungi
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Legume crop residues serve as a source of nitrogen (N) for succeeding crops in low-input production systems, and characterizing the release of this N supports efforts to develop sound economic and environmental management practices. Nitrogen mineralization of 15N-labelled field crop residues was monitored in a Greenville sandy loam during a 140-day laboratory incubation at 25°C. Residue type strongly influenced the rate of N mineralization; decomposition rate constants were 0.283, 0.083, 0.00047 and 0.0014 day-1 for alfalfa (Medicago sativa L.) stover (above-ground plant parts), alfalfa roots, maize (Zea mays L.) stover (above-ground plant parts excluding cob and kernels) and maize roots, respectively. At the end of the incubation, 50% of alfalfa stover and 25% of alfalfa root residues N were mineralized, whereas these proportions were 8% for maize stover and 12% for root residues. Mineralization of 15N from alfalfa stover residues was also monitored in a greenhouse experiment to determine N availability during the growth of maize inoculated or not with vesicular-arbuscular mycorrhizal (VAM) fungi, and to evaluate the effects of the presence of plants on the decomposition of the residues. Stover and root dry matter yields were greatest for maize inoculated with VAM fungi and grown in residue-amended soil. At the final harvest, maize grown in residue-amended soils had accumulated 44% more dry matter and 40% more N than maize grown in unamended soils. Enhanced VAM colonization of roots inoculated with a mixture of three Glomus spp. increased the residue N accumulation in maize roots at 5 weeks after silking and at the final harvest. Alfalfa stover decomposed rapidly both in the presence and absence of maize plants, but the amount of 15N mineralized at the end of the experiment was influenced by the presence of living roots; 23% of the 15N in alfalfa stover residues was mineralized in soil without plants compared to about 38% when maize plants were present. These results suggest that N mineralization is enhanced by the presence of living roots.
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    URL: http://dx.doi.org/10.1023/A:1014958321933
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    The importance of root gravitropism for inter-root competition and phosphorus acquisition efficiency: results from a geometric simulation model (2000)
    Springer
    Plant and soil 218 (2000), S. 159-171 
    Details
    ISSN: 1573-5036
    Keywords: competition ; roots ; common bean ; mineral nutrition ; models ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We have observed that low soil phosphorus availability alters the gravitropic response of basal roots in common bean (Phaseolus vulgaris L.), resulting in a shallower root system. In this study we use a geometric model to test the hypotheses that a shallower root system is a positive adaptive response to low soil P availability by (1) concentrating root foraging in surface soil horizons, which generally have the highest P availability, and (2) reducing spatial competition for P among roots of the same plant. The growth of nine root systems contrasting in gravitropic response over 320 h was simulated in SimRoot, a dynamic three-dimensional geometric model of root growth and architecture. Phosphorus acquisition and inter-root competition were estimated with Depzone, a program that dynamically models nutrient diffusion to roots. Shallower root systems had greater P acquisition per unit carbon cost than deeper root systems, especially in older root systems. This was due to greater inter-root competition in deeper root systems, as measured by the volume of overlapping P depletion zones. Inter-root competition for P was a significant fraction of total soil P depletion, and increased with increasing values of the P diffusion coefficient (De), with root age, and with increasing root gravitropism. In heterogenous soil having greater P availability in surface horizons, shallower root systems had greater P acquisition than deeper root systems, because of less inter-root competition as well as increased root foraging in the topsoil. Root P acquisition predicted by SimRoot was validated against values for bean P uptake in the field, with an r 2 between observed and predicted values of 0.75. Our results support the hypothesis that altered gravitropic sensitivity in P-stressed roots, resulting in a shallower root system, is a positive adaptive response to low P availability by reducing inter-root competition within the same plant and by concentrating root activity in soil domains with the greatest P availability.
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    URL: http://dx.doi.org/10.1023/A:1014987710937
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    The effect of agricultural practices on the development of indigenous arbuscular mycorrhizal fungi. I. Field studies in an Indonesian ultisol (2000)
    Springer
    Plant and soil 218 (2000), S. 137-144 
    Details
    ISSN: 1573-5036
    Keywords: agricultural practices ; extra-radical mycelium ; Gliricidia sepium ; organic matter addition ; Peltophorum dasyrachis ; soil disturbance ; species richness of AMF ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Two pre-established agricultural field trials were assessed for the abundance of arbuscular mycorrhizal fungi (AMF) in the soil (density of spores, species richness and lengths of extra-radical mycelium [ERM]) in association with one of three tropical plant species (Gliricidia sepium, Peltophorum dasyrachis and Zea mays). The trials were managed by one of three agricultural practices: soil disturbance in a monoculture system, a root barrier to prevent interactions between plants in an agroforestry system or the addition of organic matter (OM) in an agroforestry and a monoculture system. The lengths of ERM of AMF in the soil were greater in the agroforestry system than the monoculture system. These were greater when a root barrier was present, but decreased when OM was added. Soil disturbance reduced the density of spores, species richness and the lengths of ERM of AMF compared with the undisturbed soil. This work indicates that agricultural trials may provide a useful tool to monitor the abundance of AMF in the field. Clearly, there is potential to increase the abundance of AMF, from different genera, in the soil through the management of agricultural practices. The significance of the abundance of AMF for subsequent benefits to plant growth and development and ultimately the sustainability of tropical agro-ecosystems are discussed.
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    URL: http://dx.doi.org/10.1023/A:1014966801446
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    On variation in forest floor thickness across four red pine plantations in Pennsylvania, USA (2000)
    Springer
    Plant and soil 219 (2000), S. 57-69 
    Details
    ISSN: 1573-5036
    Keywords: decomposition ; litter quality ; mycorrhiza ; nitrogen ; phosphorus ; saprotrophic microorganisms ; tannins ; forest soils ; acidification
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We studied variation in forest floor thickness in four plantations of red pine (Pinus resinosa Ait.) which were similar in age, soil type and associated vegetation. The plantations were located (west to east) in the Clear Creek, Moshannon, Sproul and Tiadaghton State Forests of Pennsylvania, USA. A gradient in forest floor thickness exists across these plantations; the forest floor is thickest in the west and it becomes progressively thinner toward the east. Decomposition of imported litter increased from west to east, suggesting that the variation in forest floor thickness is related to variation in the rate of decomposition. Decomposition rates were related to saprotroph abundance. Variation in forest floor N and phenolic concentrations, in overall mycorrhiza density and in the relative proportions of three common mycorrhiza morphotypes could not explain the variation in decomposition rate. The P concentrations and pH of the forest floor were significantly lower at Clear Creek and Moshannon, where decomposition rates were lowest, compared to Sproul and Tiadaghton, where decomposition rates were most rapid. This suggests that P concentration and pH may have exerted some control on decomposition.
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    Comparisons of RFLP and PCR-based markers to detect polymorphism between wheat cultivars (2000)
    Springer
    Euphytica 114 (2000), S. 135-142 
    Details
    ISSN: 1573-5060
    Keywords: Cheyenne ; polymorphism ; RAPD ; recombinant inbred chromosome line(RICL) RFLP ; STS ; SSR ; Triticum aestivum ; Wichita
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Previously chromosome 3A of wheat (Triticum aestivum L.) was reported to carry genes influencing yield, yield components, plant height, and anthesis date. The objective of current study was to survey various molecular marker systems for their ability to detect polymorphism between wheat cultivars Cheyenne(CNN) and Wichita (WI), particularly for chromosome3A. Seventy-seven `sequence tagged site' (STS), 10simple sequence repeat (SSR), 40 randomly amplified polymorphic DNA (RAPD) markers, and 52 restriction fragment length polymorphism (RFLP) probes for wheat homoeologous group 3 chromosomes, were investigated. Three (3.9%) STS-PCR primer sets amplified polymorphic fragments for the two cultivars, of which one was polymorphic for chromosome 3A. Sixty percent of SSR markers detected polymorphism between CNN and WI of which 50% were polymorphic for chromosome 3A. Twenty percent of RAPD markers detected polymorphism between CNN and WI in general, but none of these detected polymorphism for chromosome 3A. Of the fifty-two RFLP probes, 78.8% detected polymorphism between CNN and WI for group 3 chromosomes with one or more of seven restriction enzymes and 42% of the polymorphic fragements were for chromosome 3A. These high levels of RFLP and SSR polymorphisms between two related wheat cultivars could be used to map and tag genes influencing important agronomic traits. It may also be important to reconsider RFLP as the most suitable marker system at least for anchor maps of closely related wheat cultivars.
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    Variation among Andean races of maize for cold tolerance during heterotrophic and early autotrophic growth (2000)
    Springer
    Euphytica 111 (2000), S. 33-41 
    Details
    ISSN: 1573-5060
    Keywords: Andean maize ; cold tolerance ; germplasm evaluation ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Cold in the initial growth stages is an important stressfactor for maize grown in regions with a temperate climate,particularly in case of early sowing. Sources of tolerancehave been identified in adapted genotypes, but promisinggenes for cold tolerance should also be found in materialdeveloped under the lower-temperature margins of the cropdistribution. This research was conducted in order to testAndean maize accessions for cold tolerance expressed duringboth the heterotrophic and early autotrophic growth stages.Experiments were conducted in controlled environments tostudy cold tolerance traits (germination %, germinationindex and plant growth rate) at continuous 10°C (heterotrophic growth) and at varying 10–16°C (autotrophic growth). An experiment was also performed inthe field with early sowing (both heterotrophic and autotrophic growth). In each experiment, a control trialwas conducted in more favourable conditions (i.e. continuous25°C in a controlled environment or late planting inthe field) so that cold tolerance traits could also beexamined as the ratio between the stress and the controltrial. None of the accessions was superior for all coldtolerance traits. However, several Andean maize accessionsoutperformed the US Corn-belt hybrid checks for one or moretraits, both in heterotrophic and autotrophic growth. Overall, BOZM 855, PMS 636, Poblacion D, Poblacion E andBOZM 696 were the best accessions, suggesting that they canbe a promising source of genes for improving cold toleranceof adapted maize genotypes.
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    RAPD characterization of Brazilian barley (Hordeum vulgare ssp. vulgare) varieties (2000)
    Springer
    Euphytica 111 (2000), S. 127-135 
    Details
    ISSN: 1573-5060
    Keywords: barley varieties ; genetic variability ; Hordeumvulgare ssp. vulgare ; molecular characterization ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Thirteen varieties of Brazilian barley selected for malting qualities were analysed by RAPD (Random Amplified Polymorphic DNA). Amplification with 18 random primers generated 221 reproducible bands, of which 206 bands were polymorphic (93%):of this number, 137 fragments (62%) detected diversity among varieties and 56 bands (25.34%) allowed the distinction of varieties or groups of them. Variation was detected in all Brazilian varieties studied. Within-variety similarities estimated by Jaccard Similarity Coefficient ranged from 0.28 to 0.94, with averages ranging from 0.57 to 0.83, and an overall average of 0.72. Nevertheless, in the cluster analysis representatives of the same variety always fell into the same group and only later joined the other varieties. The average intervarietal similarities estimated by Jaccard Similarity Coefficient ranged from 0.45 to 0.62, with an overall average of 0.52. Many bands or combinations of bands which were responsible for the differentiation of all varieties were detected. Nevertheless, the majority of these bands cannot be considered as diagnostic markers because a great number of them did not occur in many representatives of the variety or had low intensity or even because they were not easily identified in the total pattern of bands.
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    Genetic diversity in tef [Eragrostis tef (Zucc) Trotter] and its relatives as revealed by Random Amplified Polymorphic DNAs (2000)
    Springer
    Euphytica 112 (2000), S. 15-22 
    Details
    ISSN: 1573-5060
    Keywords: Eragrostis curvula ; E. pilosa ; E. tef ; genetic diversity ; RAPD ; Tef
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Tef is one of the staple cereal crops in Ethiopia. To evaluate genetic diversity of tef and its relatives, 47 accessions of tef, three accessions of E. pilosa, and six accessions of E. curvulawere analyzed using random amplified polymorphic DNA (RAPD) markers. The level of polymorphism among the wild species was extremely high, while low polymorphism was detected among tef accessions. All cultivars and wild species under study could be distinguished with the help of different primers, thereby indicating the potential of RAPD in the genetic fingerprinting of tef. Accessions from E. curvula and E. pilosa can be differentiated by a single selected primer. In spite of low polymorphism within tef, accessions under study could be distinguished by a combination of selected primers. Cluster analysis indicated that tef is a very closely related species to E. pilosa with 45%similarity, supporting the hypothesis that tef originated from E. pilosa based on morphological data. Given that RAPD are relatively quick, simple to use, and are not subjected to environmental influences, they provide a valuable new approach for the genetic fingerprinting and study of genetic diversity in tef.
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    URL: http://dx.doi.org/10.1023/A:1003802207158
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    Growth analysis of maize field crops under phosphorus deficiency. II. Radiation-use efficiency, biomass accumulation and yield components (2000)
    Springer
    Plant and soil 224 (2000), S. 259-272 
    Details
    ISSN: 1573-5036
    Keywords: light interception ; phosphorus ; radiation-use efficiency ; yield components ; Zea mays L.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Biomass accumulation by crops depends on both light interception by leaves and on the efficiency with which the intercepted light is used to produce dry matter. Our aim was to identify which of these processes were affected for maize (Zea mays L., cv Volga) field crops grown under phosphorus (P) deficiency. In the preceding paper (Plénet et al., 2000), it was shown that P deficiency severely reduced leaf growth. In this paper, the effect of P deficiency on the radiation-use efficiency (RUE) was investigated. The experimental work was carried out in 1995, 1996 and 1997 on a long-term P fertilisation trial located on a sandy soil in the south-west of France. Three P fertilisation regimes have been applied since 1972: no- P (P0 treatment) and different rates of P fertiliser (P1.5: 1.5 times the grain P export and P3: 3 times the grain P export). These fertilisation regimes have led to contrasted levels of soil P supply. Only slight differences were observed between the P1.5 and P3 treatment for above-ground biomass accumulation and grain yield. Conversely the grain yield was significantly reduced in P0 (−11%). Above-ground biomass production was severely reduced, with the maximum difference between treatment (−60% in P0) occurring between 400 and 600 °C days after sowing. The lower biomass production in P0 was accounted for by the reduced amount of photosynthetically active radiation (PAR) absorbed by the canopy, which was itself the consequence of the reduced leaf area index (see Plénet et al., 2000). The calculated RUE were found to depend on the plant stage, especially during the pre-flowering period, and on the average air temperature. No effect of P deficiency was observed on the calculated RUE, even during the period when above-ground biomass accumulation was the most severely reduced. These results obtained in field crop conditions strengthen the idea that P deficiency affects plant growth, especially leaf growth, earlier and to a greater extent than photosynthesis per unit leaf area.
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    URL: http://dx.doi.org/10.1023/A:1004835621371
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    Autumn leaf colours as indicators of decomposition rate in sycamore (Acer pseudoplatanus L.) (2000)
    Springer
    Plant and soil 225 (2000), S. 33-38 
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    ISSN: 1573-5036
    Keywords: deciduous tree ; foliar pigmentation ; fungus ; litter mass loss ; nitrogen ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We tested the hypothesis that there is a causal connection between autumn colour, nutrient concentration and decomposibility of fresh leaf litter. Samples from patches of different autumn colours within the leaves of the deciduous tree sycamore (Acer pseudoplatanus) were sealed into litter bags and incubated for one winter in an outdoor leaf mould bed. Green leaf patches were decomposed faster than yellow or brown patches and this corresponded with the higher N and P concentrations in the former. Black patches, indicating colonisation by the tar spot fungus Rhytisma acerinum, were particularly high in P, but were decomposed very slowly, owing probably to resource immobilisation by the fungus. The results supported the hypothesis and were consistent with a previous study reporting an interspecific link between autumn coloration and decomposition rate. Autumn leaf colour of deciduous woody plants may serve as a useful predictor of litter decomposibility in ecosystem or biome scale studies where extensive direct measurements of litter chemistry and decomposition are not feasible.
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    URL: http://dx.doi.org/10.1023/A:1026530214258
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    Root-induced increases in soil pH and nutrient availability to field-grown cereals and legumes on acid sandy soils of Sudano-Sahelian West Africa (2000)
    Springer
    Plant and soil 225 (2000), S. 117-127 
    Details
    ISSN: 1573-5036
    Keywords: anion/cation uptake ; cowpea ; millet ; phosphorus ; rhizosphere
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A field experiment with millet (Pennisetum glaucum L.), sorghum [Sorghum bicolor (L.) Moench], cowpea (Vigna unguiculata L.) and groundnut (Arachnis hypogeae L.) was conducted on severely P-deficient acid sandy soils of Niger, Mali and Burkina Faso to measure changes in pH and nutrient availability as affected by distance from the root surface and by mineral fertiliser application. Treatments included three rates of phosphorus (P) and four levels of nitrogen (N) application. Bulk, rhizosphere and rhizoplane soils were sampled at 35, 45 and 75 DAS in 1997 and at 55 and 65 DAS in 1998. Regardless of the cropping system and level of mineral fertiliser applied, soil pH consistently increased between 0.7 and two units from the bulk soil to the rhizoplane of millet. Similar pH gradients were observed in cowpea, but pH changes were much smaller in sorghum with a difference of only 0.3 units. Shifts in pH led to large increases in nutrient availability close to the roots. Compared with the bulk soil, available P in the rhizoplane was between 190 and 270% higher for P-Bray and between 360 and 600% higher for P-water. Exchangeable calcium (Ca) and magnesium (Mg) levels were also higher in the millet rhizoplane than in the bulk soil, whereas exchangeable aluminium (Al) levels decreased with increasing pH close to the root surface. The results suggest an important role of root-induced pH increases for crops to cope with acidity-induced nutrient deficiency and Al stress of soils in the Sudano-Sahelian zone of West Africa.
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    Diverse responses of root cell structure to aluminium stress (2000)
    Springer
    Plant and soil 226 (2000), S. 113-116 
    Details
    ISSN: 1573-5036
    Keywords: aluminium ; root cells ; stress adaptation ; structural response ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plant cells respond to a certain stress factor in different ways depending on their developmental stage and type of tissue. Structural damage may be severe or even lethal in individual cells within a tissue that exhibits moderate or no effects of stress. In the case of aluminium toxicity, detailed observations of root tips of 3 day old Zea mays L., cv. TO360 seedlings revealed differences in the response of some cells. Two different structural changes appeared within root epidermis just behind the root cap. Cells with dark and shrunken cytoplasm occurred next to swollen cells with preserved cellular compartments. Within the root cortex, individual cells or a few cells of a file have severely damaged cytoplasm, in contrast to almost undisturbed cytoplasm of adjacent cells. Such extremely sensitive cells appear irregularly within the root apex. Their structural similarity with cells that are observed after a hypersensitive response in infected plant tissues suggests a role to accumulate aluminium, in order to allow the surrounding tissue to survive the stress.
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    Response of tomato plants to chilling stress in association with nutrient or phosphorus starvation (2000)
    Springer
    Plant and soil 226 (2000), S. 99-106 
    Details
    ISSN: 1573-5036
    Keywords: chilling ; chlorophyll fluorescence ; nutrient ; phosphorus ; photosynthesis ; starvation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The experiments were conducted on two tomato cultivars: Garbo and Robin. Mineral starvation due to plant growth in 20-fold diluted nutrient solution (DNS) combined with chilling reduced the rate of photosynthesis (P N) and stomatal conductance (g) to a greater extent than in plants grown in full nutrient solution (FNS). In phosphate-starved tomato plants the P N rate and stomatal conductance decreased more after chilling than in plants grown on FNS. In low-P plants even 2 days after chilling the recovery of CO2 assimilation rate and stomatal conductance was low. A resupply of phosphorus to low-P plants (low P + P) did not improve the rate of photosynthesis in non-chilled plants (NCh) but prevented PN inhibition in chilled (Ch) plants. The greatest effect of P resupply was expressed as a better recovery of photosynthesis and stomatal conductance, especially in non-chilled low P + P plants. The F v/F m (ratio of variable to maximal chlorophyll fluorescence) decreased more during P starvation than as an effect of chilling. Supplying phosphorus to low-P plants caused the slight increase in the F v/F mratio. In conclusion, after a short-term chilling in darkness a much more drastic inhibition of photosynthesis was observed in nutrient-starved or P-insufficient tomato plants than in plants from FNS. This inhibition was caused by the decrease in both photochemical efficiency of photosystems and the reduction of stomatal conductance. The presented results support the hypothesis that tomato plants with limited supply of mineral nutrients or phosphorus are more susceptible to chilling.
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    Leaf endophyte Neotyphodium coenophialum modifies mineral uptake in tall fescue (2000)
    Springer
    Plant and soil 227 (2000), S. 115-126 
    Details
    ISSN: 1573-5036
    Keywords: endophyte ; mineral nutrition ; Neotyphodium coenophialum ; phosphorus ; tall fescue
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Neotyphodium coenophialum (Morgan-Jones and Gams) Glenn, Bacon and Hanlin, a fungal endophyte found primarily in shoots of tall fescue (Festuca arundinacea Shreb.), can modify rhizosphere activity in response to phosphorus (P) deficiency. In a controlled environment experiment, two cloned tall fescue genotypes (DN2 and DN4) free (E-) and infected (E+) with their naturally occurring endophyte strains were grown in nutrient solutions at low P (3.1 ppm) or high P (31 ppm) concentrations for 21 d. Endophyte infection increased root dry matter (DM) of DN4 by 21% but did not affect root DM of DN2. Under P deficiency, shoot and total DM were not affected by endophyte but relative growth rate was greater in E+ than E- plants. In high P nutrient solution, E+ plants produced 13% less (DN2) or 29% more (DN4) shoot DM than E- plants. Endophyte affected mineral concentrations in roots more than in shoots. Regardless of P concentration in nutrient solution, E+ DN2 accumulated more P, Ca, Zn and Cu but less K in roots than E- plants. When grown in high P nutrient solution, concentrations of Fe and B in roots of E+ DN2 plants were reduced compared with those of E- plants. Concentrations of P, Ca and Cu in roots of DN4 were less, but K was greater in E+ than E- plants. In shoots, E+ DN2 had greater concentrations of Fe and Cu than E- DN2, regardless of P concentration in nutrient solution. Genotype DN4 responded to endophyte infection by reducing B concentration in shoots. Nutrient uptake rates were affected by endophyte infection in plants grown in low P nutrient solution. A greater uptake rate of most nutrients and their transport to shoots was observed in DN2, but responses of DN4 were not consistent. Results suggest that endophyte may elicit different modes of tall fescue adaptation to P deficiency.
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    Evaluation of the genetic diversity among elite tea (Camellia sinensis var. sinensis) accessions using RAPD markers (2000)
    Springer
    Euphytica 115 (2000), S. 7-16 
    Details
    ISSN: 1573-5060
    Keywords: Camellia sinensis ; genetic diversity ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The diversity of 27 superior tea (Camellia sinensis var. sinensis) accessions from Korea, Japan and Taiwan was examined with RAPD-PCR (Random Amplified Polymorphic DNA Polymerase Chain Reaction) markers. Out of the 50 primers screened, 17 primers generated 58 polymorphic and reproducible bands. A minimum of 3 primers was sufficient to distinguish all the 27 accessions studied. The Shannon's index used to partition diversity into inter- and intra-group, revealed that 71 percent of variability resided within groups and 29 percent between groups. Diversity was greatest within the Korean group followed by Taiwan and Japan. The relatively high diversity observed in Korea might reflect the larger genetic base of its plantations while the low diversity in Japan could be explained by the long and intensive tea selection programme in this country. A dendrogram based on the UPGMA-link method using Jaccard's distances and multivariate Factorial correspondence analysis clustered the tea accessions into two main groups, regrouping the Taiwan cultivars on the one side and the Korean and Japanese accessions on the other side. This suggests that the Taiwan tea studied here may have a different origin from that of Korea and Japan.
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    Evaluation of genetic variation in Lachenalia bulbifera (Hyacinthaceae) using RAPDs (2000)
    Springer
    Euphytica 115 (2000), S. 141-147 
    Details
    ISSN: 1573-5060
    Keywords: genetic variation ; Lachenalia ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract RAPD (randomly amplified polymorphic DNA) analyses were carried out on 21 accessions of Lachenalia bulbifera (Cyrillo) Engl. Five pre-selected primers produced an average of 88% polymorphisms. Fifteen of the 21 accessions could be identified using the five primers. In a pairwise comparison genetic distance values ranging from 0.11 to 1.08 were obtained. These values reveal a high amount of variation within the species. The genetic distance values within the tetraploid and hexaploid groups on the south coast were low, but values were high between the groups on the south coast and those on the west coast. A dendogram was constructed from the RAPD banding profiles, using UPGM cluster analysis. The dendogram clusters certain accessions together. These clusters are supported by their geographical locality and chromosome data. The hexaploid group, tetraploid group and octoploid group on the south coast are respectively clustered together. It is concluded that RAPDs can be used to assess the genetic variation at an intra-specific level in Lachenalia.
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    Somatic hybrids between navel orange (Citrus sinensis) and grapefruit (C. paradisi) for seedless triploid breeding (2000)
    Springer
    Euphytica 116 (2000), S. 281-285 
    Details
    ISSN: 1573-5060
    Keywords: Citrus ; early flowering ; electrofusion ; RAPD ; somatic hybrids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Protoplasts from cell suspension cultures of ‘Bonnaza’ navel orange (Citrus sinensis (L.) Osbeck) were electrically fused with mesophyll protoplasts isolated from seedless ‘Red Blush’ grapefruit (Citrusparadisi). After 6 months of culture, a total of 20 plants were regenerated. Root tip chromosome counting revealed that 4 of them were tetraploids (2n = 4x = 36)and the rest were diploids (2n = 2x = 18) morphologically resembling the mesophyll parent. After 6 months of transplantation into the greenhouse, 4 of the diploidmesophyll regenerants unexpectedly flowered, but this phenomenon disappeared in the next year. This is the first report of precocious flowering in citrus via protoplast fusion. RAPD analysis further confirmed that the tetraploid regenerants were somatic hybrids while the diploid regenerants were mesophyll parent type. This somatic hybrid will be utilized as a possible pollen parent for improving the seedy pummelo cultivars in China by producing triploid seedless pummelo hybrid. The mechanism of early flowering was also discussed.
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    Genetic diversity in Indonesian shallot (Allium cepa var. ascalonicum) and Allium × wakegi revealed by RAPD markers and origin of A. × wakegi identified by RFLP analyses of amplified chloroplast genes (2000)
    Springer
    Euphytica 111 (2000), S. 23-31 
    Details
    ISSN: 1573-5060
    Keywords: Allium cepa var. ascalonicum ; Allium × wakegi ; PCR-RFLP ; RAPD ; shallot
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract RAPD and PCR-RFLP analyses were conducted to establish the phylogenetic relationships among collected accessions of shallot and Allium × wakegi, and to assess the origin of A. × wakegi. Twenty out of 100 primers were amplified with 112 scorable bands for cluster analysis. Two main cluster groups consisting of one group for shallot and another group for A. × wakegi were clearly separated. The sub-groups of clusters reflected the phenotype differentiation in shallots and regional specificity in some A. × wakegiaccessions. The present results were also in agreement with previous systematics by isozymes of which the highest genetic variation of A. × wakegi in Indonesia was found in West Java suggesting the possibility that this place might be one of the germplasm centers. From RFLP analysis of amplified matK gene of cpDNA it was demonstrated that A. × wakegi originated from shallot as a maternal plant × Welsh onion as a paternal plant as well as from reciprocal crosses.
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    An extended random primer amplified region (ERPAR) marker linked to a dominant male sterility gene in cabbage (Brassica oleracea var. capitata) (2000)
    Springer
    Euphytica 112 (2000), S. 267-273 
    Details
    ISSN: 1573-5060
    Keywords: cabbage (Brassica oleracea var. capitata) ; ERPAR ; RAPD ; male sterility gene ; molecular marker
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Similar to SCAR, an extended random primer amplified region (ERPAR) marker is a PCR amplified genomic DNA fragment at a single genetically defined locus. However, ERPAR uses specific primer pairs derived from RAPD primers by adding bases sequentially to their 3′-ends. As an example, an ERPAR marker was derived from a RAPD marker (OT11900) linked to a dominant male sterility gene in cabbage (Brassica oleracea var. capitata). After two cycles of base adding and primer pair screening, a primer pair (5′-TTCCCCGCGACT-3′and 5′-TTCCCCGCGAGA-3′) amplified a single intense band with the same size as OT11900. The identity of the new marker and OT11900 was verified by segregation analysis. The new marker amplified by this extended primer pair was named as EPT11900. The development of ERPAR exploits the importance of 3′-end bases of primers in PCR ERPAR shares advantages of SCAR, but eliminates the need for cloning and sequencing. It is a fast and universal way of converting RAPD markers into stable markers.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1003903627969
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    DNA fingerprinting and classification of geographically related genotypes of olive-tree (Olea europaea L.) (2000)
    Springer
    Euphytica 116 (2000), S. 131-142 
    Details
    ISSN: 1573-5060
    Keywords: AP-PCR ; cultivar identification ; Oleaeuropaea ; olive tree ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Málaga is a province of Spain where olive-trees are cultivated in a large range of environments, climates and soils. We have developed a reliable and reproducible method to detect RAPD and AP-PCR polymorphisms, using DNA from olive-tree (Olea europaea L.) leaves. Starting from their natural orchards, fifty-six olive-tree cultivars throughout Málaga province, including oil and table olive cultivars, were screened and grouped into 22 varieties. A total of 62 informative polymorphic loci that provide 601 conspicuous bands were enough to differentiate the varieties. Clustering analyses managing 3 different pairwise distances, as well as phylogenetic analyses, led to the same result: olive-trees in Málaga can be divided into three main groups. Group I (90% of certainty) contains wild type and two introduced varieties, group II (83% of certainty) covers some native olive-trees, and group III (58% of certainty) is an heterogeneous cluster that includes varieties originating and cultivated in a number of Andalusian locations. Geographic location seems to be the first responsible of this classification, and morphological traits are needed to justify the group III subclustering. These results are consistent with the hypothesis of autochthonic origin of most olive-tree cultivars, and have been used to support a Label of Origin for the olive oil produced by the varieties included in group II.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004011829274
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    Expression of mature plant resistance to Striga hermonthica in maize (2000)
    Springer
    Euphytica 115 (2000), S. 149-158 
    Details
    ISSN: 1573-5060
    Keywords: Maize ; mature plant resistance ; Striga hermonthica ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Twelve maize genotypes with different degrees of resistance were evaluated in plots inoculated with seeds of the phytoparasite Striga hermonthica (Del.) Benth. and in Striga-free (control) plots for three seasons between 1991 and 1993. Resistant genotypes, although showing similar levels of underground infection as susceptible 9 weeks after maize planting (WAP), had significantly fewer emerged parasitic plants and sustained lower damage. Host damage was not determined by the severity of infection. Percent height and dry matter reductions increased from 3 to 6 WAP for resistant and susceptible genotypes. While percent height and dry matter reductions for resistant genotypes declined at 9 and 12 WAP, susceptible genotypes either maintained or increased their levels of damage. Correlation between the severity of height and dry matter reductions at the vegetative (3 and 6 WAP) and reproductive (9 and 12 WAP) stages of maize growth were not significant, indicating that damage at early stages of growth cannot be used to predict mature plant response. Maize damage score (1–9) at 8 WAP, a non destructive and composite shoot indicator of host performance under Striga infestation, was significantly correlated (r = 0.88, r = 0.82; p 〈 0.01) to the level of shoot reduction at mature plant stages. Emerged Striga count at 8 WAP was significantly correlated (r = 0.98, p 〈 0.01) to the count at 10 WAP, the time when parasite emergence was highest. Under high and uniform infestation, mature plant resistance can be detected at 8 WAP, the onset of flowering in maize.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004006115082
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    Comparative analysis of cultivated melon groups (Cucumis melo L.) using random amplified polymorphic DNA and simple sequence repeat markers (2000)
    Springer
    Euphytica 115 (2000), S. 225-241 
    Details
    ISSN: 1573-5060
    Keywords: genetic distance ; germplasm management ; multi-dimensional scaling ; plant germplasm ; RAPD ; SSR
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Random amplified polymorphic DNA (RAPD) and simple sequence repeat (SSR) markers were used to characterize genetic relationships among 46 accessions in two C. melo L. subsp. melo (Cantalupensis, Inodorus) and subsp.agrestis (Conomon, and Flexuosus) groups. Genetic distance (GD) estimates were made among and between accessions in four melon market classes [Galia, Ogen, Charentais, and Shipper (European and U.S. types)] of Cantalupensis, one market class of Inodorus (Cassaba and Honey Dew), one accession of Conomon, and one accession of Flexuosus by employing three GD estimators; simple matching coefficient, Jaccard's coefficient, and Nei's distance-D. Differences detected among 135 RAPD bands and 54 SSR bands (products of 17 SSR primers) were used to calculate GD. Band polymorphisms observed with 21 RAPD primers and 7 SSR primers were important (p =0.01) in the detection of genetic differences. Estimators of GD were highly correlated (p 0.0001; rs = 0.64 to0.99) when comparisons were made between estimation methods within a particular marker system. Lower correlations (rs = 0.17 to 0.40) were detected (P 〉 0.001) between marker systems using any one estimator. The GD of the Conomon and Flexuosus accessions was significantly different (p〉 0.001)from the mean GD of all the market classes examined. The mean GD (Jaccard's coefficient) among accessions of Ogen, Galia, Cassaba, Charentais, European shipper, and U.S. shipper groups was 0.11 ± 0.04, 0.33± 0.09, 0.21 ± 0.04, 0.26 ± 0.10, 0.17± 0.05 and 0.22 ± 0.08, respectively. Market classes were distinct (p 〉 0.001), such that GDs between Galia and other accessions were the largest(mean GD 0.34 to 0.35), and GDs between Ogen and other accessions were the smallest (mean GD 0.29 to 0.30). Contrasts between the U.S. shipper cultivar Top Mark and accessions within any market class was relatively large (mean GD = 0.42 ± 0.06). Empirical estimations of variances associated with each marker type in the accessions examined indicated that, per band, lower coefficients of variation can be attained in the estimation of GD when using RAPDs compared to SSRs. Nevertheless, the genetic relationships identified using these markers were generally similar. The disparity between the analyses of the two markers made may be related to the amount of genome coverage which is characteristic of a particular marker system and/or its efficiency in sampling variation in a population. Results of RAPD marker analysis suggest that 80 marker bands were adequate for assessing the genetic variation present in the accessions examined.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004054014174
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    Genetic variation and phylogenetic relationships based on RAPD analysis in section Caulorrhizae, genus Arachis (Leguminosae) (2000)
    Springer
    Euphytica 116 (2000), S. 187-195 
    Details
    ISSN: 1573-5060
    Keywords: Arachis pintoi ; Arachis repens ; peanut ; variation ; phylogeny ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Wild Arachis germplasm includes potential forage species, such as the rhizomatous Arachis glabrata and the stoloniferous A. pinto and A. repens. Commercial cultivars of A. pintoi have already been released in Australia and in several Latin American countries, and most of these cultivars were derived from a single accession of A. pintoi (GK 12787). Arachis repens is less productive as a forage plant than is A. pintoi. However, it can be crossed with A. pintoi, and thus has good potential as germplasm for the improvement of A. pintoi. Arachis repens is also used as an ornamental plant and ground cover. Many new accessions of these two stoloniferous species are now available, and they harbor significant genetic variability beyond that available in the few older accessions, previously available. Therefore, these new accessions need to be conserved, documented and considered in terms of their potential for crop improvement and direct commercial use. Sixty-four accessions of this new germplasm were analyzed using RAPD analysis. Most of the accessions of A. repens grouped together into a clearly distinct group. In general, the accessions from the distinct valleys of the Jequitinhonha, São Francisco and Paranã rivers did not group together, suggesting there is not a tight relation between dispersion by rivers and the geographic distribution of genetic variation in these species.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004025619704
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    Sampling Strategies for Mapping Soil Phosphorus and Soil Potassium Distributions in Cool Temperate Grassland (2000)
    Springer
    Precision agriculture 2 (2000), S. 347-357 
    Details
    ISSN: 1573-1618
    Keywords: grassland soils ; mapping ; phosphorus ; potassium ; sampling strategies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Unlike the situation for arable soils, virtually nothing is known about the spatial dependencies of soil properties in cool temperate grassland or about what the optimal sampling strategies ought to be for mapping soil nutrient distributions in such situations. The aim of this study was to investigate the spatial variability in ‘plant-available’ (soil) phosphorus and potassium in a grass silage field in Northern Ireland and devise ‘optimal’ sampling strategies for mapping their distributions. Soil samples were collected from the field at 25 m intervals in a regular rectangular grid to provide a database of soil properties. Different data combinations were subsequently abstracted from this database for comparison purposes, and ordinary kriging used to produce interpolated soil maps. Soil potassium displayed greater spatial variability than soil phosphorus. In keeping with this observation, the results of three separate statistical procedures demonstrated that the optimal sample size for estimating the ‘true’ population means was about twice as large for soil potassium as for soil phosphorus. Optimal sampling strategies, however, related not just to sample size but to sample combination and field shape as well.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1012399915193
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    Screening of heterozygous DNA markers in shiitake (Lentinula edodes) using de-dikaryotization via preparation of protoplasts and isolation of four meiotic monokaryons from one basidium (2000)
    Springer
    Journal of wood science 46 (2000), S. 395-400 
    Details
    ISSN: 1611-4663
    Keywords: Lentinula edodes ; Heterozygous DNA marker ; RAPD ; de-dikaryotization ; Protoplast
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract A suitable screening method for heterozygous DNA markers in shiitake,Lentinula edodes (Berk.) Pegler, is reported. Monokaryons were derived from a dikaryon by de-dikaryotization via protoplast formation. Compatibility of the monokaryons was determined by pairwise culture on agar plates. We selected the primers to amplify polymorphic fragments among the original strain (Hokken600∶H600) and two monokaryons (H600PP-39 and H600PP-67) showing compatibility. A total of 135 fragments were selected as specific random amplified polymorphic DNAs (RAPDs) resulting from 56 primers of the 147 primers tested. Furthermore, we tested whether the polymorphic fragments segregated into 2∶2 among four strains isolated from a basidium. Most of the polymorphic fragments (about 97.8%) showed 2∶2 segregation among the four strains. We concluded that the polymorphic fragments were heterozygous if they were detected in either of the monokaryons (H600PP-39 and H600PP-67) and segregated to 2∶2 among four meiotic strains (H600B-1,-2, -3, and -4). A total of 132 heterozygous DNA markers were therefore selected from a dikaryon of shiitake (Hokken600∶H600).
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00776403
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    Transfer of PLRV resistance fromSolanum verrucosum Schlechdt to potato (S. tuberosum L.) by protoplast electrofusion (2000)
    Springer
    Potato research 43 (2000), S. 31-42 
    Details
    ISSN: 1871-4528
    Keywords: somatic hybrids ; potato leafroll virus ; RAPD ; Solanum wild species ; pollen fertility
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Somatic fusions between an accession of the diploid wild speciesSolanum verrucosum and a dihaploid S.tuberosum genotype were produced in order to incorporate resistance to potato leafroll virus (PLRV). In total 15 somatic hybrids out of 16 regenerants were obtained. Identification of hybrids was based on additive RAPD patterns, general morphological characteristics, chromosome numbers and chloroplast counts in stomata guard cells. A field trial was performed with the hybrids, their two parents and the control cultivar Kennebec to assess field performance and phenotypic variability. Yield parameters varied considerably among somatic hybrids. Some of the hybrids gave significantly higher yields, tuber numbers and tuber weights than both parents. Pollen fertility of hybrids ranged from 19 to 77%. Twelve hybrids were found to be resistant to PLRV.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF02358511
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    The Vigna angularis complex: Genetic variation and relationships revealed by RAPD analysis, and their implications for in situ conservation and domestication (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 123-134 
    Details
    ISSN: 1573-5109
    Keywords: domestication ; genetic variation ; in situ conservation ; RAPD ; V. angularis complex
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The present study, using RAPD analysis, was undertaken to characterize genetic variation in three forms of V. angularis, cultivated, wild and weedy forms, and their relationships. The materials used consisted of 171 individuals (plants) or cultivars from 23 populations including 5 wild populations, 6 weedy populations, 6 cultivated populations and 6 populations with plants having wild and weedy or intermediate morphology, denoted here as complex populations. The materials used were collected on Honshu Island, Japan and seeds collected directly from the field were germinated for DNA extraction. In addition, 6 landrace accessions of V. angularis from the genebank were also analyzed. Genetic variation was highest in the wild form (Hg= 0.132; GD = 0.388), followed by the weedy form (Hg= 0.124; GD = 0.341) and the least in the cultivated form (Hg= 0.079; GD = 0.274). Intra-population genetic variation was high in the weedy and in the wild populations. However, inter-population was greater than intra-population genetic variation for all groups of populations studied in the V. angularis complex. 93% of the total diversity in the present study was exhibited by plants from complex populations and specific RAPD bands were found in these populations. Our results provide evidence that complex populations would be a logical focus for efforts to conserve the V. angularis complex in situ. Our results suggest that weedy populations are usually an ecotype of the wild form adapted to a different habitat.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008769204620
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    Differences in the apportionment of molecular and morphological variation in North American strawberry and the consequences for genetic resource management (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 647-657 
    Details
    ISSN: 1573-5109
    Keywords: Fragaria chiloensis ; Fragaria virginiana ; genetic resources ; morphology ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Variation for 24 morphological traits measured in a greenhouse environment and 36 randomly amplified polymorphic DNA (RAPD) markers was assessed among 318 wild octoploid strawberry (Fragariaspp.) genotypes from diverse habitats across the northern USA. RAPD marker frequencies and certain leaf and flower morphology traits (petiole color, leaf mass/area ratio, leaflet length and width, flower and receptacle diameter, petal width, flowers/inflorescence) were significantly different between the F. chiloensis-platypetala and F. virginiana-glauca species complexes. The proportion of variation accounted for by provenance effects was lower for the RAPD markers than for most morphological traits, especially in the F. virginiana-glauca species complex. Morphological traits of potential adaptive importance group the collection into provenances within each species-complex, and reflect the significant habitat and geographic differences across the region from which the germplasm was collected. Variation among populations within provenances was low for the molecular and most morphological traits, with a much larger amount of variability among plants within populations. Most of the variation for the presumably more selectively-neutral RAPD data was among plants within populations and populations within provenances rather than among the provenances that were recognized based on morphological traits, especially in the F. virginiana-glauca complex. Patterns of diversity for morphological traits must be considered, along with more selectively-neutral molecular characters such as RAPDs, to formulate effective sampling strategies and to properly estimate the quantity and apportionment of diversity within this germplasm.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1026530125493
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    Development of an algorithm identifying maximally diverse core collections (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 515-526 
    Details
    ISSN: 1573-5109
    Keywords: Capsicum ; core collection ; genetic diversity ; RAPD ; Theobroma cacao
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The development of a core collection, one which represents the genetic diversity of a crop with minimal redundancy and increases utility of the collection as a whole, is especially important as the funding for germplasm collections decreases. With limited resources, it is difficult to manage large germplasm collections and disperse genetically diverse germplasm to plant breeders. An algorithm was developed to assist in selection of core collections based on estimates of genetic distance. The criteria for selection of the maximum genetically diverse set were based on rankings of genetic distance between an accession with respect to all other accessions. Depending on the size core which a user wished, a zone around each selected accession was determined and no other accession within these limits was selected. The premise for the algorithm was that the genetic variability represented in the core must be representative of the distribution of genetic distances within the population of interest. In the present study, the algorithm was used with RAPD-marker-based estimates of genetic distance for 270 Theobroma cacao L. accessions and 134 Capsicum accessions that chose a set representing 18.5% of the population and representing the breadth of RAPD-based variation.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008784610962
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