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  • Frontiers Media  (145)
  • Springer  (107)
  • American Association for the Advancement of Science (AAAS)
  • Institute of Physics
  • MDPI Publishing
  • Molecular Diversity Preservation International
  • PANGAEA
  • 2020-2023  (254)
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  • 1
    Publication Date: 2022-03-07
    Description: Coastal dynamics are the result of several processes controlling the balance between sediment input and output over time. The beach system is not always able to maintain a neutral coastal balance due to natural and anthropogenic causes. We present an integrated marine geology, geomorphological and sea-level rise analysis in the coastal sector between Torre delle Ciavole and Capo Calavà (North-Eastern Sicily, Italy).This sector is characterized by high uplift rates and frequent seismicity (mainly generated by the very active Vulcano-Tindari Fault System), promoting the development of mass-wasting processes in the coastal and offshore sectors. A main erosive feature observed in the area is the head of the Gioiosa Marea submarine canyon, located at some meters of depth, few hundred meters far the coastline. The main morphological features of the canyon were reconstructed through the analysis of high-resolution multibeam data, indicating that the canyon is active, as also testified by the comparison of time-lapse aerial photos. Due to this active setting, the study area is exposed to multiple geohazards, among which we deal with: (1) retrogressive instability at the head of the Gioiosa Marea submarine canyon, (2) coastal erosion favored by the downlope funnelling of littoral drift at the canyon head, (3) flooding scenario at 2100 using the IPCC (Intergovernmental Panel on Climate Change) and Rahmstorf sea-level projections. The consequences associated with these geohazards are amplified by the strong anthropization pressures occurring along in this sector. Our results provide key insights regarding the future scenarios of this coastal sector, revealing the effects of the retrogressive activity associated with the canyon head on the coastal strip. We also present the first management tool for the application of forecasting studies by local administrations.
    Description: Published
    Description: 2
    Description: 3A. Geofisica marina e osservazioni multiparametriche a fondo mare
    Description: JCR Journal
    Keywords: Submarine canyon · Sicily continental margin · Uplift rate · Coastal erosion · Relative sea-level projections · Coastal flooding ; Geohazard assessment
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2022-04-21
    Description: This book outlines the current development of geoethical thinking, proposing to the general public reflections and categories useful for understanding the ethical, cultural, and societal dimensions of anthropogenic global changes. Geoethics identifies and orients responsible behaviors and actions in the management of natural processes, redefining the human interaction with the Earth system based on a critical, scientifically grounded, and pragmatic approach. Solid scientific knowledge and a philosophical reference framework are crucial to face the current ecological disruption. The scientific perspective must be structured to help different human contexts while respecting social and cultural diversity. It is impossible to respond to global problems with disconnected local actions, which cannot be proposed as standard and effective operational models. Geoethics tries to overcome this fragmentation, presenting Earth sciences as the foundation of responsible human action toward the planet. Geoethics is conceived as a rational and multidisciplinary language that can bind and concretely support the international community, engaged in resolving global environmental imbalances and complex challenges, which have no national, cultural, or religious boundaries that require shared governance. Geoethics is proposed as a new reading key to rethinking the Earth as a system of complex relationships, in which the human being is an integral part of natural interactions.
    Description: Published
    Description: 1TM. Formazione
    Description: 2TM. Divulgazione Scientifica
    Description: 3TM. Comunicazione
    Keywords: geoethics ; responsibility ; social-ecological systems ; Earth ; environmental ethics ; Anthropocene ; ecological humanism ; global anthropogenic changes ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book
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  • 3
    Publication Date: 2022-05-04
    Description: The availability of computer tools able to describe the behavior of pyroclastic density currents (PDCs) with uncertainty quantification is of primary importance for the assessment of volcanic hazard. A common strategy to assess the intrinsic variability of these phenomena is based on the analysis of large sets of numerical simulations with variable input parameters. The use of models fast enough to allow for a large number of simulations, such as the so-called kinetic energy models, is thus advantageous. Due to the sensitivity of kinetic energy models to poorly constrained input parameters, the definition of their variation ranges is a critical step in the construction of hazard maps and a numerical calibration becomes necessary. We present a set of reproducible and structured calibration procedures of numerical models based either on a reference deposit or on the distribution of runout distance or inundation area of documented PDCs. In the first case, various metrics can be adopted to compare the model results with the reference PDC deposit (root mean square distance, Hausdorff distance, and Jaccard index), facilitating the development of scenario-based hazard assessments. Calibrations based on the distribution of runout distance or inundation area allow the construction of probabilistic hazard maps that are not conditioned on the occurrence of a specific scenario, but rather reflect the variability of the documented PDCs during the time window considered. Importantly, our calibration strategies allow one to set the input parameters considering their potential statistical dependence. These procedures have been implemented on the user-friendly versions of two kinetic energy models: ECMapProb 2.0 and BoxMapProb 2.0, whose functionalities are presented for the first time in this paper. The different calibration strategies and the functionalities of the two programs are illustrated by considering three case studies: El Misti (Peru), Merapi (Indonesia), and Campi Flegrei (Italy).
    Description: Published
    Description: 29
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2022-03-16
    Description: The increased concentration of greenhouse gases in the atmosphere from human activities traps heat within the climate system and increases ocean heat content (OHC). Here, we provide the first analysis of recent OHC changes through 2021 from two international groups. The world ocean, in 2021, was the hottest ever recorded by humans, and the 2021 annual OHC value is even higher than last year’s record value by 14 ± 11 ZJ (1 zetta J = 1021 J) using the IAP/CAS dataset and by 16 ± 10 ZJ using NCEI/NOAA dataset. The long-term ocean warming is larger in the Atlantic and Southern Oceans than in other regions and is mainly attributed, via climate model simulations, to an increase in anthropogenic greenhouse gas concentrations. The year-to-year variation of OHC is primarily tied to the El Niño-Southern Oscillation (ENSO). In the seven maritime domains of the Indian, Tropical Atlantic, North Atlantic, Northwest Pacific, North Pacific, Southern oceans, and the Mediterranean Sea, robust warming is observed but with distinct inter-annual to decadal variability. Four out of seven domains showed record-high heat content in 2021. The anomalous global and regional ocean warming established in this study should be incorporated into climate risk assessments, adaptation, and mitigation.
    Description: Published
    Description: 373–385
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: ocean warming
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 5
    Publication Date: 2022-03-17
    Description: Physics of earthquake source can be investigated by monitoring active faults from borehole observatory in reservoirs (Maxwell et al. 2010) or by interpretation of seismic waves at the earth’s surface (Shearer 2019). Indeed, most information on earthquake mechanics is retrieved from seismology (e.g., Lee et al. 2002). However, the low resolution of these indirect techniques (cm to km scale) yields limited information on the physical and chemical deformation mechanisms active during earthquake rupture nucleation and propagation (Kanamori and Anderson 1975). Experimental studies of frictional instabilities on fault gouge material or pre-existing surfaces (e.g., Brace and Byerlee 1966) may overcome those limitations (Scholz 1998; Marone 1998; Persson 2013). For instance, friction controls earthquake nucleation and propagation, the static and dynamic stress drops, the frictional heat generated during slip, and consequently the energy budget of earthquakes (Scholz 2019; Di Toro et al. 2011). All these processes can be investigated and monitored through laboratory experiments. In the last decades, rock friction properties have long been investigated using triaxial apparatuses in saw-cut configuration (e.g., Jaeger 1959; Byerlee 1967; Handin 1969), in which the fault is loaded at low velocities, typically orders of µm/s, and accumulates small displacements, typically few mm. In a seminal paper, Brace and Byerlee (1966) suggested that the stick–slip phenomenon observed in these rock friction experiments is analogous to natural earthquakes. Furthermore, to address the problem of earthquakes nucleation, biaxial apparatuses were developed and have long been used to study frictional properties of experimental faults under sub-seismic slip velocities in double-direct shear configuration (e.g., Dieterich 1972; Mair et al. 2002; Collettini et al. 2014; Giorgetti et al. 2015). The biaxial apparatus developed at USGS (USA) is amongst the first biaxial apparatuses used to investigate rock frictional properties (e.g., Dieterich 1972). Other pioneering biaxial apparatuses are the one in the Rock and Sediment Mechanics Laboratory at the Pennsylvania State University (USA) (e.g., Mair et al. 2002) and BRAVA (Brittle Rock deformAtion Versatile Apparatus) installed at INGV in Rome (Italy) (Collettini et al. 2014). Although the biaxial apparatuses developed in the past 50 years are characterized by different boundary conditions in terms of forces, pressures, temperatures and size of the samples, all of them take advantages from the double-direct shear configuration that allows good control of the normal and shear forces acting of the fault, accurate measurements of fault slip and dilation/compaction, and constant contact area. Friction studies conducted with triaxial and biaxial deformation apparatuses are characterized by sub-seismic slip velocities and a limited amount of slip, 〈 10–3 m/s and few cm, respectively (e.g., Jaeger 1959; Byerlee 1967,1978; Brace and Byerlee 1966; Handin 1969; Paterson and Wong 2005; Lockner and Beeler 2002; Mair et al. 2002; Savage and Marone 2007; Samuelson et al. 2009; Carpenter et al. 2016). These experiments showed that the apparent static friction coefficient μ (i.e., μ = τ/σneff, where τ is the shear stress and σneff the effective normal stress acting on the fault) is between 0.60 and 0.85 for most rocks (Byerlee’s rule; except for phyllosilicates-rich rocks [Byerlee 1978]), for normal stresses up to 2 GPa, and temperatures up to 780 K. The apparent friction can thus be expressed as a function of slip velocity and a state variable, and modelled with the empirical rate- and state-dependent friction law (Dieterich 1979; Ruina 1983). Additionally, at velocities typical of earthquake nucleation phase, the apparent friction varies only a few percents for small changes in slip velocity, determining if a fault is or not prone to nucleate earthquakes. Although Byerlee’s rule and the rate-and-state law have many applications in earthquake mechanics (inter-seismic and nucleation phase of earthquakes), these experiments were performed at slip velocities and displacements orders of magnitude smaller than those of earthquakes. Therefore, these experiments are unable to characterize the propagation phase of earthquakes. In the last 15 years, the multiplication of the rotary shear apparatus, designed to achieve slip velocities higher than 1 m/s and infinite displacement, overcome those limitations and produced unexpected results (Di Toro et al. 2010). A pioneering rotary shear apparatus capable of achieving seismic slip velocities up to 1.3 m/s were built and installed in Japan (Shimamoto 1994). Amongst others (see Di Toro et al. 2010 and references therein), a state-of-art rotary shear apparatus (SHIVA, Slow to High-Velocity Shear Apparatus) capable of deforming samples at slip rates up to 9 m/s has been installed at INGV in Rome (Italy) (Di Toro et al. 2010). Studies performed with these rotary shear apparatuses have shown a significant decrease in fault strength with increasing slip and slip velocity. They also reveal various dynamic fault‐weakening mechanisms (frictional melting, thermal pressurization, silica gel, elastohydrodynamic lubrication) that are likely active during earthquakes, including mechanisms that were unknown before conducting these experiments. Though this new frontier is promising, key aspects of earthquake mechanics laboratory investigation, like being able to conduct high slip velocity experiments on rocks under elevated pore fluid pressure and temperatures characteristic of natural and induced earthquakes, remain beyond current experimental capabilities. Furthermore, studying links between pore‐fluid pressure, permeability, and frictional properties remains a challenge. To date, very few high-velocity friction experiments have been performed in presence of pore fluid pressure (Tanikawa 2012a, b, 2014; Violay et al. 2014, 2015, 2019; Cornelio et al. 2019a, b). In this paper, we present a new state-of-art apparatus combining the advantages of biaxial apparatuses, i.e., simple geometry, high normal forces, confining pressure and pore fluid pressure, and the advantages of the rotary shear apparatuses, i.e. high slip velocity implemented thanks to the presence of electromagnetic motors. Building on the design of recent low-velocity biaxial machines implemented with pressure vessels (Samuelson et al. 2009; Collettini et al. 2014) and implementing the system with powerful linear motors (Di Toro et al. 2010), the new HighSTEPS (High Strain TEmperature Pressure Speed) apparatus is able to reproduce the deformation conditions typical of the seismogenic crust, i.e., confining pressure up to 100 MPa, slip velocity from 10–5 to 0.25 m/s, temperature up to 120 °C, pore pressure up to 100 MPa. Under these unique boundary conditions, the new apparatus allows the investigation of the entire seismic cycle (inter-seismic, nucleation and propagation).
    Description: Published
    Description: 2039–2052
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Keywords: Biaxial friction apparatus ; Low to high slip velocity ; Deformation conditions of the seismogenic upper crust
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2022-03-29
    Description: Endemic Antarctic macroalgae are especially adapted to live in extreme Antarctic conditions. Their potential biogeographic distribution niche is primarily controlled by the photoperiodic regime and seawater temperatures, since these parameters regulate growth, reproduction, and survival during the entire life cycle. Here we analyzed the upper survival temperature (UST) of juvenile sporophytes and the temperature range for sporophyte formation from gametophytes of Desmarestia menziesii, one of the dominant endemic Antarctic brown algal species. This process is a missing link to better evaluate the full biogeographical niche of this species. Two laboratory experiments were conducted. First, growth and maximum quantum yield of juvenile sporophytes were analyzed under a temperature gradient (0, 5, 10, 12, 13, 14, 15, and 16 °C) in a 16:8 h light:dark (LD) regime (Antarctic spring condition) for 2 weeks. Second, the formation of sporophytes from gametophytes (as a proxy of gametophyte reproduction) was evaluated during a 7 weeks period under a temperature gradient (0, 4, 8, 12, and 16 °C), and two different photoperiods: 6:18 h LD regime simulating winter conditions and a light regime simulating the Antarctic shift from winter to spring by gradually increasing the light period from 7.5:16.5 h LD (late winter) to 18.5:5.5 h LD (late spring). Sporophytes of D. menziesii were able to grow and survive up to 14 °C for 2 weeks without visible signs of morphological damage. Thus, this species shows the highest UST of all endemic Antarctic Desmarestiales species. In turn, gametophyte reproduction solely took place at 0 °C but not at 4–8 °C. The number of emerging sporophytes was six times higher under the light regime simulating the transition from winter to spring than under constant short day winter conditions. There was a negative relationship between the number of sporophytes formed and the gametophyte density at the beginning of the experiment, which provides evidence that gametophyte density exerts some control upon reproduction in D. menziesii. Results strongly indicate that although sporophytes and gametophytes may survive in warmer temperatures, the northernmost distribution limit of D. menziesii in South Georgia Islands is set by the low temperature requirements for gametophyte reproduction. Hence, global warming could have an impact on the distribution of this and other Antarctic species, by influencing their growth and reproduction.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
    Format: application/pdf
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  • 7
    Publication Date: 2022-03-21
    Description: On 30 October 2020 a MW 7.0 earthquake occurred in the eastern Aegean Sea, between the Greek island of Samos and Turkey’s Aegean coast, causing considerable seismic damage and deaths, especially in the Turkish city of Izmir, approximately 70 km from the epicenter. In this study, we provide a detailed description of the Samos earthquake, starting from the fault rupture to the ground motion characteristics. We first use Interferometric Synthetic Aperture Radar (InSAR) and Global Positioning System (GPS) data to constrain the source mechanisms. Then, we utilize this information to analyze the ground motion characteristics of the mainshock in terms of peak ground acceleration (PGA), peak ground velocity (PGV), and spectral pseudo-accelerations. Modelling of geodetic data shows that the Samos earthquake ruptured a NNE-dipping normal fault located offshore north of Samos, with up to 2.5-3 m of slip and an estimated geodetic moment of 3.3 ⨯ 1019 Nm (MW 7.0). Although low PGA were induced by the earthquake, the ground shaking was strongly amplified in Izmir throughout the alluvial sediments. Structural damage observed in Izmir reveals the potential of seismic risk due to the local site effects. To better understand the earthquake characteristics, we generated and compared stochastic strong ground motions with the observed ground motion parameters as well as the ground motion prediction equations (GMPEs), exploring also the efficacy of the region-specific parameters which may be used to better predict the expected ground shaking from future large earthquakes in the region.
    Description: Published
    Description: 4745–4771
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
    Publication Date: 2022-03-21
    Description: The China Seismo-Electromagnetic Satellite (CSES), China’s first satellite to measure geophysical fields with scientific goals in both space and solid earth physics, was launched successfully in February 2018. It carries high-precision magnetometers to measure the geomagnetic field. In this study, the CSES magnetic data were used to extract the signal of the lithospheric magnetic field caused by magnetized rocks in the crust and uppermost mantle. First, an along-track analysis of the CSES magnetic data was undertaken near the Bangui magnetic anomaly in central Africa and the Tarim magnetic anomaly in China, demonstrating that the CSES magnetic data are indeed sensitive to the lithospheric magnetic anomaly field. Then a lithospheric magnetic anomaly map over China and surrounding regions was derived. This map is consistent with the lithospheric part of the CHAOS-7 model. In particular, it clearly reveals four major magnetic anomalies containing long-wavelength signals at the altitude of Low-Earth-Orbiting satellites. Three magnetic highs are located over the Tarim, Sichuan and Songliao basin, the origins of which could be related to large-scale tectonic-magmatic activities during geological history. A prominent magnetic low is otherwise found in the southern Himalayan-Tibetan plateau, possibly caused by the shallow Curie depth in this region. To further improve the precision of the lithospheric magnetic field model, more detailed data processing and multi-source data merging are needed.
    Description: Published
    Description: 1118–1126
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
    Publication Date: 2022-03-01
    Description: Porous carbons are materials of wide application and their request is more and more increasing in the last years: Properly designed synthesis is presently available for the preparation of materials to be used in several fields (e.g.: adsorption, molecular separation, and catalysis). The characterization of the porous carbons is usually carried out using different techniques such as thermogravimetric analyses, Raman spectroscopy, Scanning electron microscopy, etc. In this work, the micro-Raman technique is adopted in combination with N2 physisorption at 77 K to monitor how the synthetic approach influences the presence of either amorphous or ordered regions in porous carbons. The typical D and G Raman bands of activated carbons have been carefully deconvoluted in six different components by a fitting procedure, and the determined R1 = ID1/IG ratio correlated to their specific surface area.
    Description: Published
    Description: 419–431
    Description: 1TR. Georisorse
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
    Publication Date: 2022-02-18
    Description: The petrological study of volcanic products emitted during the paroxysmal events of December 2015 from the summit craters of Mount Etna allow us to constrain T-P-XH2O phase stability, crystallization conditions, and mixing processes along the main open-conduit feeding system. In this study, we discuss new geochemical, thermo-barometric data and related Rhyolite- MELTS modelling of the eruptive activity that involved the concomitant activation of all summit craters. The results, in comparison with the previous paroxysmal events of the 2011–2012, reinforce the model of a vertically extended feeding system and highlight that the activity at the New South-East Crater was fed by magma residing at a significantly shallower depth with respect to the Central Craters (CC) and North-East Crater (NEC), even if all conduits were fed by a common deep (P = 530–440 MPa) basic magmatic input. Plagioclase dissolution, resorption textures, and the Rhyolite-MELTS stability model corroborate its dependence on H2O content; thus, suggesting that further studies on the effect that flushing from fluids with different H2O/ CO2 ratio are needed to understand the eruption-triggering mechanisms for high energetic strombolian paroxysmal episodes.
    Description: Published
    Description: 88
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
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  • 11
    Publication Date: 2022-02-16
    Description: Validation and benchmarking of pyroclastic current (PC) models is required to evaluate their performance and their reliability for hazard assessment. Here, we present results of a benchmarking initiative built to evaluate four models commonly used to assess concentrated PC hazard: SHALTOP, TITAN2D, VolcFlow, and IMEX_SfloW2D. The benchmark focuses on the simulation of channelized flows with similar source conditions over five different synthetic channel geometries: (1) a flat incline plane, (2) a channel with a sharp 45° bend, (3) a straight channel with a break-in-slope, (4) a straight channel with an obstacle, and (5) a straight channel with a constriction. Several outputs from 60 simulations using three different initial volume fluxes were investigated to evaluate the performance of the four models when simulating valley-confined PC kinematics, including overflows induced by topographic changes. Quantification of the differences obtained between model outputs at t = 100 s allowed us to identify (1) issues with the Voellmy-Salm implementation of TITAN2D and (2) small discrepancies between the three other codes that are either due to various curvature and velocity formulations and/or numerical frameworks. Benchmark results were also in agreement with field observations of natural PCs: a sudden change in channel geometries combined with a high-volume flux is key to generate overflows. The synthetic benchmarks proved to be useful for evaluating model performance, needed for PC hazard assessment. The overarching goal is to provide an interpretation framework for volcanic mass flow hazard assessment studies to the geoscience community.
    Description: Published
    Description: 75
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: benchmarking ; pyroclastic current ; numerical modeling ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 12
    Publication Date: 2022-02-21
    Description: Deciphering magma evolution below ocean basaltic volcanoes is all the more challenging because magma mixing is a common process tending to modify the pristine geochemical diversity during magma ascent. On the western flank of the Piton de la Fournaise volcano, transitional basalts have compositions that testify to origins down to the upper mantle and display a widespread geochemical diversity ranging from a tholeiitic affinity to an alkaline one. There, we show that evolved melt inclusions and matrix glasses (MgO 〈 9 wt%) record an alkali enrichment coupled with a Ca/Al ratio decrease, which tracks the effect of clinopyroxene crystallization at the depth of the mantle-crust underplating layer. At this depth and shallower, reverse zoning of olivine crystals, clinopyroxene dissolution, and hybrid melt compositions testify to extensive mixing processes leading to a homogenization of the pristine geochemical footprint of melts upon ascent. Enrichment in incompatible trace elements in some evolved melt inclusions suggests that magma ponding at the depth of the mantle-crust underplating layer favours also assimilation of melts originating from low degrees of partial melting of cumulates (wehrlites, dunites). Conversely, the most primitive melt inclusions documented so far at La Réunion Island (MgO up to 11.2 wt%) better preserve a pristine geochemical variability related to partial melting of a slightly heterogeneous mantle source. We suggest that these slightly distinct source components may mirror the compositions of recent melts from the two closely located Piton de la Fournaise and Piton des Neiges volcanoes.
    Description: Published
    Description: 84
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
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  • 13
    Publication Date: 2022-02-24
    Description: We used 1029 earthquakes, with magnitudes ranging from M 3.0 to M 6.5, located in central Apennines, Italy, and recorded by 414 local stations to study the variation of the quality factor QS of shear waves with depth. We first determined average nonparametric attenuation functions in the frequency band from 0.5 to 20 Hz and hypocenter distances less than 155 km to correct the observed acceleration spectra for attenuation effects. Then, we separated source and site effects from the corrected spectral records to determine the changes of QS with depth. We used a 1D local shear-wave velocity model to calculate the travel times of the source-station paths, and we inverted the observed spectra to determine QS in three different depth intervals (0–4 km, 4–10 km and 10–15 km) and five frequencies (0.5, 1, 4, 10 and 20 Hz). We found that QS increases with frequency at all depths considered and tends to have lower values at shallow depths. The average value of QS is consistent with previous studies made in central Italy and can be approximated by QS = 43f0.94. To describe the frequency dependence of QS with depth (H), we determine the following relations: QS = 5.5f1.39, 0.5 ≤ f ≤ 10 Hz and QS = 151.5, f 〉 10 Hz for 0–4 km, QS = 52f0.87 for 4 〈 H 〈 10 km and QS = 51f0.92 for 10 ≤ H ≤ 15 km. We conclude that the Q-depth-dependent model can be useful to improve estimates of source parameters and ground motion prediction in the central Apennines region of Italy.
    Description: Published
    Description: 2059–2075
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Keywords: Solid earth
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 14
    Publication Date: 2022-02-24
    Description: Correction to: Natural Hazards https://doi.org/10.1007/s11069-021-04675-z
    Description: Correction to: Natural Hazards https://doi.org/10.1007/s11069-021-04675-z
    Description: Published
    Description: 203
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
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  • 15
    Publication Date: 2022-02-25
    Description: Physics-based broadband ground-motion simulations are generated for the strong mainshocks that occurred in the region of the Central Ionian Islands, on 26th January 2014 in Kefalonia (Mw6.1) and 17th November 2015 in Lefkas (Mw6.5). The study area is associated with frequent strong earthquakes both in the historical and instrumental eras. During the last decades, the network of strong-motion accelerographs in the area has been densified, and thus provided an adequate number of strong ground-motion records as a means to better examine the related ground-motion characteristics. In the present study, broadband ground motions for the two case studies are simulated both at selected sites and at a dense grid of points covering the affected areas. The low-frequency part of the synthetics is computed using a discrete wavenumber finite element method by convolving Green’s functions with a kinematic slip model in the frequency domain. A stochastic finite fault model approach based on a dynamic corner frequency is considered to calculate the ground motions for the higher frequencies. The broadband synthetic time series are generated after merging the results obtained from the two separate techniques, by performing a weighted summation at intermediate frequencies. The simulated values are validated by comparison with both recorded Peak Ground Acceleration (PGA) and PeakGround Velocity (PGV) values and the estimated ones by using widely accepted Ground Motion Prediction Equations (GMPEs). Our results indicate that both the spatial distribution and the amplification pattern of the simulated ground motions, in the near-field, in terms of PGA and PGV are highly influenced by the slip heterogeneity and the maximum slip patches within the seismic source.
    Description: Published
    Description: 3505–3527
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Keywords: seismic hazard ; Strong ground motion ; near-source ground motion ; Ionian Islands ; stochastic finite-fault method ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 16
    Publication Date: 2022-02-25
    Description: Stromboli is an active, open conduit mafic volcano, whose persistent mild Strombolian activity is occasionally punctuated by much stronger explosions, known as paroxysms. During summer 2019, the volcano unexpectedly produced one such paroxysm on July 3, followed by intense explosive and intermittent effusive activity culminating in a second paroxysm on August 28. Visual observations and the analysis of the fall deposits associated with the two paroxysms allowed us to reconstruct ballistic exit velocities of up to 160 m s−1. Plume heights of ~ 8.4 km and 6.4 km estimated for the two events correspond to mass eruption rates of 1.1 x 10 6 kg s−1 and 3.6 x 105 kg s−1, respectively. This is certainly an underestimate as directional pyroclastic flows into which mass was partitioned immediately formed, triggering small tsunamis at the sea entrance. The mass of ballistic spatters and blocks erupted during the July 3 event formed a continuous cover at the summit of the volcano, with a mass calculated at ~ 1.4 x 10 8 kg. The distribution of fall deposits of both the July 3 and August 28 events suggests that pyroclasts characterized by terminal fall velocities 〈 10–20 m s−1 remained fully suspended within the convective region of the plume and did not fall at distances closer than ca 1700 m to the vent. Based on the impulsive, blast-like phenomenology of paroxysms as well as the deposit distribution and type, paroxysms are classified as basaltic Vulcanian in style. The evolution of the summer 2019 eruptive events was not properly captured within the framework of the alert level system which is focused on tsunamigenic processes, and this is discussed so as to provide elements for the implementation of the reference scenarios and an upgrade of the system to take into account such events. In particular we find that, although still largely unpredictable, at least at operational time scales, and not necessarily tsunamigenic, Vulcanian eruptions and the subsequent evolution of the eruptive phenomena should be considered for the alert level system. This serves as a warning to the implementation of alert systems where the unexpected needs to be taken into account, even at systems that are believed to be relatively “predictable” as is the case at many persistently active, open vent mafic systems.
    Description: Published
    Description: 1
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: Vulcanian eruptions ; Paroxysm ; Strombolian eruptions ; Ballistic ejecta ; Eruption plume ; Volcanic hazard
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 17
    Publication Date: 2022-02-25
    Description: This paper reports on experiments devoted to explore the role of specific attributes of humanoid virtual agents that may influence elderly users’ perception and attitude, determining their acceptance and adoption as assistive devices. In particular, it investigates elderly preference on agents’ gender and the role of the agents’ ability to use voice during the interaction. To this aim two different groups of seniors were involved in the experiments. The first group evaluated talking virtual agents, the second one the same virtual agents, but silenced. The data shows that elderly users, independently from their gender, prefer to interact with female agents, especially when they are able to talk to them, revealing the role played by the voice. Furthermore, it was found a significant effect of the elderly level of experience with technology: when interacting with agents with voice, elderly users with high technological experience were less interested and considered the proposed agents less attractive and appealing, while just the opposite occurred when interacting with silenced agents.
    Description: Published
    Description: 4429–4436
    Description: 5TM. Informazione ed editoria
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 18
    Publication Date: 2022-02-15
    Description: Correction to: Bulletin of Earthquake Engineering https://doi.org/10.1007/s10518-021-01077-1
    Description: Published
    Description: 3317
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 19
    Publication Date: 2022-02-14
    Description: Recent studies point to the sensitivity of mid-latitude winter climate to Arctic sea ice variability. However, there remain contradictory results in terms of character and timing of Northern Hemisphere large-scale circulation features to Arctic sea ice changes. This study assesses the impact of realistic late autumn eastern Arctic sea ice anomalies on atmospheric wintertime circulation at mid-latitudes, pointing to a hidden potential for seasonal predictability. ​Using a dynamical seasonal prediction system, an ensemble of seasonal forecast simulations of 23 historical winter seasons is run with reduced November sea ice cover in the Barents-Kara Seas, and is compared to the respective control seasonal hindcast simulations set. ​A non energy-conserving approach is adopted for achieving the desired sea ice loss, with artificial heat being added conditionally to the ocean surface heat fluxes so as to inhibit the formation of sea ice during November. Our results point to a robust atmospheric circulation response in the North Pacific sector, similar to previous findings on the multidecadal timescale. Specifically, an anticyclonic anomaly at upper and lower levels is identified over the eastern midlatitude North Pacific, leading to dry conditions over the North American southwest coast. The responses are related to a re-organization (weakening) of west-Pacific tropical convection and interactions with the tropical Hadley circulation. ​A possible interaction of the poleward-shifted Pacific eddy-driven jet stream and the Hadley cell is discussed​. ​The winter circulation response in the Euro-Atlantic sector is ephemeral in character and statistically significant in January only, corroborating previous findings of an intermittent and non-stationary Arctic sea ice-NAO link during boreal winter. These results ​aid our understanding of the seasonal impacts of reduced eastern Arctic sea ice on the midlatitude atmospheric circulation with implications for seasonal predictability in wintertime.
    Description: Published
    Description: 2687–2700
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 20
    Publication Date: 2022-07-13
    Description: Growing evidence indicates that the atmospheric and oceanic circulation experiences a systematic poleward shift in a warming climate. However, the complexity of the climate system, including the coupling between the ocean and the atmosphere, natural climate variability and land-sea distribution, tends to obfuscate the causal mechanism underlying the circulation shift. Here, using an idealised coupled aqua-planet model, we explore the mechanism of the shifting circulation, by isolating the contributing factors from the direct CO2 forcing, the indirect ocean surface warming, and the wind-stress feedback from the ocean dynamics. We find that, in contrast to the direct CO2 forcing, ocean surface warming, in particular an enhanced subtropical ocean warming, plays an important role in driving the circulation shift. This enhanced subtropical ocean warming emerges from the background Ekman convergence of surface anomalous heat in the absence of the ocean dynamical change. It expands the tropical warm water zone, causes a poleward shift of the mid-latitude temperature gradient, hence forces a corresponding shift in the atmospheric circulation and the associated wind pattern. The shift in wind, in turn drives a shift in the ocean circulation. Our simulations, despite being idealised, capture the main features of the observed climate changes, for example, the enhanced subtropical ocean warming, poleward shift of the patterns of near-surface wind, sea level pressure, storm tracks, precipitation and large-scale ocean circulation, implying that increase in greenhouse gas concentrations not only raises the temperature, but can also systematically shift the climate zones poleward.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 21
    Publication Date: 2022-06-27
    Description: © The Author(s), (2022). This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ahmed, D. A., Hudgins, E. J., Cuthbert, R. N., Kourantidou, M., Diagne, C., Haubrock, P. J., Leung, B., Liu, C., Leroy, B., Petrovskii, S., Beidas, A., & Courchamp, F. Managing biological invasions: the cost of inaction. Biological Invasions. (2022), https://doi.org/10.1007/s10530-022-02755-0.
    Description: Ecological and socioeconomic impacts from biological invasions are rapidly escalating worldwide. While effective management underpins impact mitigation, such actions are often delayed, insufficient or entirely absent. Presently, management delays emanate from a lack of monetary rationale to invest at early invasion stages, which precludes effective prevention and eradication. Here, we provide such rationale by developing a conceptual model to quantify the cost of inaction, i.e., the additional expenditure due to delayed management, under varying time delays and management efficiencies. Further, we apply the model to management and damage cost data from a relatively data-rich genus (Aedes mosquitoes). Our model demonstrates that rapid management interventions following invasion drastically minimise costs. We also identify key points in time that differentiate among scenarios of timely, delayed and severely delayed management intervention. Any management action during the severely delayed phase results in substantial losses (〉50% of the potential maximum loss). For Aedes spp., we estimate that the existing management delay of 55 years led to an additional total cost of approximately $ 4.57 billion (14% of the maximum cost), compared to a scenario with management action only seven years prior (〈 1% of the maximum cost). Moreover, we estimate that in the absence of management action, long-term losses would have accumulated to US$ 32.31 billion, or more than seven times the observed inaction cost. These results highlight the need for more timely management of invasive alien species—either pre-invasion, or as soon as possible after detection—by demonstrating how early investments rapidly reduce long-term economic impacts.
    Description: The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the InvaCost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenarios project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. DAA is funded by the Kuwait Foundation for the Advancement of Sciences (KFAS), grant no. PR1914SM-01 and the Gulf University for Science and Technology (GUST) internal seed fund, grant no. 234597. EJH is supported by a Fonds de recherche du Québec—nature et téchnologies B3X fellowship. RNC acknowledges funding from the Alexander von Humboldt Foundation. CL was sponsored by the PRIME programme of the German Academic Exchange Service (DAAD) with funds from the German Federal Ministry of Education and Research (BMBF).
    Keywords: InvaCost ; Invasive alien species ; Logistic growth ; Socioeconomic impacts ; Prevention and biosecurity ; Long-term management
    Repository Name: Woods Hole Open Access Server
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  • 22
    Publication Date: 2022-06-23
    Description: The ionospheric equivalent slab thickness (τ ) is a parameter characterizing both the distribution of the plasma in the ionosphere and the shape of the corresponding vertical electron density profile. It is calculated as the ratio of the vertical total electron content (vTEC) to the ionospheric F2-layer electron density maximum (NmF2). Since its definition dated back in the 60s, a lot of information on the behavior of τ for different helio-geophysical conditions has been cumulated and the connection with several plasma properties has been also demonstrated. The beginning of the Global Positioning System (GPS) era in the 90s had a strong effect on the studies about τ because GPS signals allow to obtain the vTEC up to about 20000 km of altitude. Recently, τ has also found application in many data-assimilation methodologies, especially for the improvement of empirical ionospheric models based on near real-time data. All of these topics are reviewed and discussed in this paper based on the literature published in the last sixty years. Moreover, to highlight and summarize the main global climatological features of τ, in this work we selected thirty-two ionospheric stations globally distributed and co-located with ground-based Global Navigation Satellite System (GNSS) receivers, for the last two solar cycles. This allowed to collect a dataset of NmF2 and vTEC that represents the largest and most complete ever analyzed for studies concerning τ , which gave the chance to deeply investigate its spatial, diurnal, seasonal, and solar activity variations. The corresponding results are presented and discussed in the light of the existing literature.
    Description: Published
    Description: 37
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 23
    Publication Date: 2022-06-22
    Description: The predictability of the Northern Hemisphere stratosphere and its underlying dynamics are investigated in five state-of-the-art seasonal prediction systems from the Copernicus Climate Change Service (C3S) multi-model database. Special attention is devoted to the connection between the stratospheric polar vortex (SPV) and lower-stratosphere wave activity (LSWA). We find that in winter (December to February) dynamical forecasts initialised on the first of November are considerably more skilful than empirical forecasts based on October anomalies. Moreover, the coupling of the SPV with mid-latitude LSWA (i.e., meridional eddy heat flux) is generally well reproduced by the forecast systems, allowing for the identification of a robust link between the predictability of wave activity above the tropopause and the SPV skill. Our results highlight the importance of November-to-February LSWA, in particular in the Eurasian sector, for forecasts of the winter stratosphere. Finally, the role of potential sources of seasonal stratospheric predictability is considered: we find that the C3S multi-model overestimates the stratospheric response to El Niño–Southern Oscillation (ENSO) and underestimates the influence of the Quasi–Biennial Oscillation (QBO).
    Description: Published
    Description: 2109–2130
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
    Publication Date: 2022-06-22
    Description: An integrated approach using chemical and microbial indicators has been tested in two different sites of the Campania Plain (Southern Italy) with different land use covering and different hydrogeological features in order: (1) to define the water-rock interaction processes, (2) to differentiate sources of pollution in a detailed way (3) to evaluate the degree of water quality in the studied alluvial aquifer and (4) to identify the most worrying elements for human's health. Groundwater have showed a HCO3-Ca signature for both investigated sites, and a progressive enrichment in alkali ions has been highlighted moving from the boundary of the plain toward the coastal areas, due to groundwater interaction with volcanic rocks along the flow path. The application of the Factor Analysis allowed to identify different sources of pollution, which were attributed to (a) leaks in the sewer system for the Agro-Aversano Area and also the spreading of manure as fertilizers in agricultural activities for the Caiazzo Plain. Furthermore, it has been highlighted that the use of major elements, trace elements and microbiological indicators, allows to accurately differentiate contamination processes in progress. In fact, from the results of the Factor Analysis applied in the Agro-Aversano area, no significant statistically relationships between major elements and microbiological indicators of fecal contamination were highlighted, unlike the Caiazzo plain where statistically significant correlations have been found between major and trace elements and microbiological indicators. The use of a Groundwater Quality Index has shown general poor water quality for the majority of analyzed samples due to the high amount of Nitrate and Fecal indicators. The use of a Health Risk Assessment highlighted that Nitrate coupled with Fluoride represent the most important concern for human health compared to the all investigated parameters in both sites.
    Description: Published
    Description: 2083–2099
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: 7SR AMBIENTE – Servizi e ricerca per la società
    Description: JCR Journal
    Keywords: Alluvial aquifer; Factor analysis; Fecal pollution; GQI; HRA; Trace elements
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 25
    Publication Date: 2022-06-22
    Description: El Niño Southern Oscillation (ENSO) represents the major driver of interannual climate variability at global scale. Observational and model-based studies have fostered a long-standing debate on the shape and intensity of the ENSO influence over the Euro-Mediterranean sector. Indeed, the detection of this signal is strongly affected by the large internal variability that characterizes the atmospheric circulation in the North Atlantic–European (NAE) region. This study explores if and how the low-frequency variability of North Pacific sea surface temperature (SST) may impact the El Niño-NAE teleconnection in late winter, which consists of a dipolar pattern between middle and high latitudes. A set of idealized atmosphere-only experiments, prescribing different phases of the anomalous SST linked to the Pacific Decadal Oscillation (PDO) superimposed onto an El Niño-like forcing in the tropical Pacific, has been performed in a multi-model framework, in order to assess the potential modulation of the positive ENSO signal. The modelling results suggest, in agreement with observational estimates, that the PDO negative phase (PDO−) may enhance the amplitude of the El Niño-NAE teleconnection, while the dynamics involved appear to be unaltered. On the other hand, the modulating role of the PDO positive phase (PDO+) is not reliable across models. This finding is consistent with the atmospheric response to the PDO itself, which is robust and statistically significant only for PDO−. Its modulation seems to rely on the enhanced meridional SST gradient and the related turbulent heat-flux released along the Kuroshio–Oyashio extension. PDO− weakens the North Pacific jet, whereby favoring more poleward propagation of wave activity, strengthening the El Niño-forced Rossby wave-train. These results imply that there might be conditional predictability for the interannual Euro-Mediterranean climate variability depending on the background state.
    Description: Published
    Description: 2009–2029
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
    Publication Date: 2022-06-22
    Description: Land surface and atmosphere are interlocked by the hydrological and energy cycles and the effects of soil water-air coupling can modulate near-surface temperatures. In this work, three paired experiments were designed to evaluate impacts of different soil moisture initial and boundary conditions on summer temperatures in the Mediterranean transitional climate regime region. In this area, evapotranspiration is not limited by solar radiation, rather by soil moisture, which therefore controls the boundary layer variability. Extremely dry, extremely wet and averagely humid ground conditions are imposed to two global climate models at the beginning of the warm and dry season. Then, sensitivity experiments, where atmosphere is alternatively interactive with and forced by land surface, are launched. The initial soil state largely affects summer near-surface temperatures: dry soils contribute to warm the lower atmosphere and exacerbate heat extremes, while wet terrains suppress thermal peaks, and both effects last for several months. Land-atmosphere coupling proves to be a fundamental ingredient to modulate the boundary layer state, through the partition between latent and sensible heat fluxes. In the coupled runs, early season heat waves are sustained by interactive dry soils, which respond to hot weather conditions with increased evaporative demand, resulting in longer-lasting extreme temperatures. On the other hand, when wet conditions are prescribed across the season, the occurrence of hot days is suppressed. The land surface prescribed by climatological precipitation forcing causes a temperature drop throughout the months, due to sustained evaporation of surface soil water. Results have implications for seasonal forecasts on both rain-fed and irrigated continental regions in transitional climate zones.
    Description: Published
    Description: 1943–1963
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere ; 03.02. Hydrology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 27
    Publication Date: 2022-09-13
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huntley, N., Brandt, M., Becker, C., Miller, C., Meiling, S., Correa, A., Holstein, D., Muller, E., Mydlarz, L., Smith, T., & Apprill, A. Experimental transmission of Stony Coral Tissue Loss Disease results in differential microbial responses within coral mucus and tissue. ISME Communications, 2(1), (2022): 46, https://doi.org/10.1038/s43705-022-00126-3.
    Description: Stony coral tissue loss disease (SCTLD) is a widespread and deadly disease that affects nearly half of Caribbean coral species. To understand the microbial community response to this disease, we performed a disease transmission experiment on US Virgin Island (USVI) corals, exposing six species of coral with varying susceptibility to SCTLD. The microbial community of the surface mucus and tissue layers were examined separately using a small subunit ribosomal RNA gene-based sequencing approach, and data were analyzed to identify microbial community shifts following disease acquisition, potential causative pathogens, as well as compare microbiota composition to field-based corals from the USVI and Florida outbreaks. While all species displayed similar microbiome composition with disease acquisition, microbiome similarity patterns differed by both species and mucus or tissue microhabitat. Further, disease exposed but not lesioned corals harbored a mucus microbial community similar to those showing disease signs, suggesting that mucus may serve as an early warning detection for the onset of SCTLD. Like other SCTLD studies in Florida, Rhodobacteraceae, Arcobacteraceae, Desulfovibrionaceae, Peptostreptococcaceae, Fusibacter, Marinifilaceae, and Vibrionaceae dominated diseased corals. This study demonstrates the differential response of the mucus and tissue microorganisms to SCTLD and suggests that mucus microorganisms may be diagnostic for early disease exposure.
    Description: This work was funded by an International Coral Reef Society student grant to N.H., National Science Foundation (NSF) VI EPSCoR 0814417 and 1946412 and NSF (Biological Oceanography) award numbers 1928753 to MEB and TBS, 1928609 to AMSC, 1928817 to EMM, 19228771 to LDM, 1927277 to DMH as well as 1928761 and 1938112 to AA, NSF EEID award number 2109622 to MEB, AA, LDM, and AMSC, and a NOAA OAR Cooperative Institutes award to AA (#NA19OAR4320074). Samples were collected under permit #DFW19057U authorized by the Department of Planning and Natural Resources Coastal Zone Management.
    Repository Name: Woods Hole Open Access Server
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  • 28
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Stunz, E., Fetcher, N., Lavretsky, P., Mohl, J., Tang, J., & Moody, M. Landscape genomics provides evidence of ecotypic adaptation and a barrier to gene flow at treeline for the arctic foundation species Eriophorum vaginatum. Frontiers in Plant Science, 13, (2022): 860439, https://doi.org/10.3389/fpls.2022.860439.
    Description: Global climate change has resulted in geographic range shifts of flora and fauna at a global scale. Extreme environments, like the Arctic, are seeing some of the most pronounced changes. This region covers 14% of the Earth’s land area, and while many arctic species are widespread, understanding ecotypic variation at the genomic level will be important for elucidating how range shifts will affect ecological processes. Tussock cottongrass (Eriophorum vaginatum L.) is a foundation species of the moist acidic tundra, whose potential decline due to competition from shrubs may affect ecosystem stability in the Arctic. We used double-digest Restriction Site-Associated DNA sequencing to identify genomic variation in 273 individuals of E. vaginatum from 17 sites along a latitudinal gradient in north central Alaska. These sites have been part of 30 + years of ecological research and are inclusive of a region that was part of the Beringian refugium. The data analyses included genomic population structure, demographic models, and genotype by environment association. Genome-wide SNP investigation revealed environmentally associated variation and population structure across the sampled range of E. vaginatum, including a genetic break between populations north and south of treeline. This structure is likely the result of subrefugial isolation, contemporary isolation by resistance, and adaptation. Forty-five candidate loci were identified with genotype-environment association (GEA) analyses, with most identified genes related to abiotic stress. Our results support a hypothesis of limited gene flow based on spatial and environmental factors for E. vaginatum, which in combination with life history traits could limit range expansion of southern ecotypes northward as the tundra warms. This has implications for lower competitive attributes of northern plants of this foundation species likely resulting in changes in ecosystem productivity.
    Description: This research was made possible by funding provided by NSF/PLR-1417645 to MM. The Botanical Society of America Graduate Student Research Award and the Dodson Research Grant from the Graduate School of the University of Texas at El Paso provided assistance to ES. The grant 5U54MD007592 from the National Institute on Minority Health and Health Disparities (NIMHD), a component of the National Institutes of Health (NIH) provided bioinformatics resources and support of JM.
    Keywords: Arctic ; Climate change ; Eriophorum vaginatum ; Landscape genomics ; Environmental niche modeling ; Genotype-environment association analyses ; Refugia
    Repository Name: Woods Hole Open Access Server
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  • 29
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Grearson, A. G., Dugan, A., Sakmar, T., Sivitilli, D. M., Gire, D. H., Caldwell, R. L., Niell, C. M., Doelen, G., Wang, Z. Y., & Grasse, B. The lesser Pacific Striped Octopus, Octopus chierchiae: an emerging laboratory model. Frontiers in Marine Science, 8, (2021): 753483, https://doi.org/10.3389/fmars.2021.753483.
    Description: Cephalopods have the potential to become useful experimental models in various fields of science, particularly in neuroscience, physiology, and behavior. Their complex nervous systems, intricate color- and texture-changing body patterns, and problem-solving abilities have attracted the attention of the biological research community, while the high growth rates and short life cycles of some species render them suitable for laboratory culture. Octopus chierchiae is a small octopus native to the central Pacific coast of North America whose predictable reproduction, short time to maturity, small adult size, and ability to lay multiple egg clutches (iteroparity) make this species ideally suited to laboratory culture. Here we describe novel methods for multigenerational culture of O. chierchiae, with emphasis on enclosure designs, feeding regimes, and breeding management. O. chierchiae bred in the laboratory grow from a 3.5 mm mantle length at hatching to an adult mantle length of approximately 20–30 mm in 250–300 days, with 15 and 14% survivorship to over 400 days of age in first and second generations, respectively. O. chierchiae sexually matures at around 6 months of age and, unlike most octopus species, can lay multiple clutches of large, direct-developing eggs every ∼30–90 days. Based on these results, we propose that O. chierchiae possesses both the practical and biological features needed for a model octopus that can be cultured repeatedly to address a wide range of biological questions.
    Description: The cephalopod program at the Marine Biological Laboratory (MBL) was supported by NSF 1827509 and NSF 1723141 grants. CN received funding from HFSP RGP0042. DG and DS received funding and research support from the University of Washington Friday Harbor Laboratories. ZYW was supported by funds from the Whitman Center at the MBL.
    Keywords: Iteroparity ; Cephalopod ; Model organism ; Aquaculture ; Reproduction – mollusk ; Developmental biology ; Neurobiology
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  • 30
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Castagno, K., Ganju, N., Beck, M., Bowden, A., & Scyphers, S. How much marsh restoration is enough to deliver wave attenuation coastal protection benefits? Frontiers in Marine Science, 8, (2022): 756670, https://doi.org/10.3389/fmars.2021.756670.
    Description: As coastal communities grow more vulnerable to sea-level rise and increased storminess, communities have turned to nature-based solutions to bolster coastal resilience and protection. Marshes have significant wave attenuation properties and can play an important role in coastal protection for many communities. Many restoration projects seek to maximize this ecosystem service but how much marsh restoration is enough to deliver measurable coastal protection benefits is still unknown. This question is critical to guiding assessments of cost effectiveness and for funding, implementation, and optimizing of marsh restoration for risk reduction projects. This study uses SWAN model simulations to determine empirical relationships between wave attenuation and marsh vegetation. The model runs consider several different common marsh morphologies (including systems with channels, ponds, and fringing mudflats), vegetation placement, and simulated storm intensity. Up to a 95% reduction in wave energy is seen at as low as 50% vegetation cover. Although these empirical relationships between vegetative cover and wave attenuation provide essential insight for marsh restoration, it is also important to factor in lifespan estimates of restored marshes when making overall restoration decisions. The results of this study are important for coastal practitioners and managers seeking performance goals and metrics for marsh restoration, enhancement, and creation.
    Keywords: Salt marsh ; Restoration ; Coastal protection ; UVVR ; Cost effectiveness ; Vegetation ; Numerical model ; Modeling
    Repository Name: Woods Hole Open Access Server
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  • 31
    Publication Date: 2022-10-31
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in O’Brien, J., McParland, E. L., Bramucci, A. R., Ostrowski, M., Siboni, N., Ingleton, T., Brown, M. V., Levine, N. M., Laverock, B., Petrou, K., & Seymour, J. The microbiological drivers of temporally dynamic Dimethylsulfoniopropionate cycling processes in Australian coastal shelf waters. Frontiers in Microbiology, 13, (2022): 894026, https://doi.org/10.3389/fmicb.2022.894026.
    Description: The organic sulfur compounds dimethylsulfoniopropionate (DMSP) and dimethyl sulfoxide (DMSO) play major roles in the marine microbial food web and have substantial climatic importance as sources and sinks of dimethyl sulfide (DMS). Seasonal shifts in the abundance and diversity of the phytoplankton and bacteria that cycle DMSP are likely to impact marine DMS (O) (P) concentrations, but the dynamic nature of these microbial interactions is still poorly resolved. Here, we examined the relationships between microbial community dynamics with DMS (O) (P) concentrations during a 2-year oceanographic time series conducted on the east Australian coast. Heterogenous temporal patterns were apparent in chlorophyll a (chl a) and DMSP concentrations, but the relationship between these parameters varied over time, suggesting the phytoplankton and bacterial community composition were affecting the net DMSP concentrations through differential DMSP production and degradation. Significant increases in DMSP were regularly measured in spring blooms dominated by predicted high DMSP-producing lineages of phytoplankton (Heterocapsa, Prorocentrum, Alexandrium, and Micromonas), while spring blooms that were dominated by predicted low DMSP-producing phytoplankton (Thalassiosira) demonstrated negligible increases in DMSP concentrations. During elevated DMSP concentrations, a significant increase in the relative abundance of the key copiotrophic bacterial lineage Rhodobacterales was accompanied by a three-fold increase in the gene, encoding the first step of DMSP demethylation (dmdA). Significant temporal shifts in DMS concentrations were measured and were significantly correlated with both fractions (0.2–2 μm and 〉2 μm) of microbial DMSP lyase activity. Seasonal increases of the bacterial DMSP biosynthesis gene (dsyB) and the bacterial DMS oxidation gene (tmm) occurred during the spring-summer and coincided with peaks in DMSP and DMSO concentration, respectively. These findings, along with significant positive relationships between dsyB gene abundance and DMSP, and tmm gene abundance with DMSO, reinforce the significant role planktonic bacteria play in producing DMSP and DMSO in ocean surface waters. Our results highlight the highly dynamic nature and myriad of microbial interactions that govern sulfur cycling in coastal shelf waters and further underpin the importance of microbial ecology in mediating important marine biogeochemical processes.
    Description: This research was supported by the Australian Research Council Grants FT130100218 and DP180100838 awarded to JS and DP140101045 awarded to JS and KP, as well as an Australian Government Research Training Program Scholarship awarded to JO’B.
    Keywords: DMSP ; DMS ; DLA ; Phytoplankton ; Bacteria ; qPCR ; 16S rRNA gene ; 18S rRNA gene
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  • 32
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Costa Jr, C., Galford, G. L., Coe, M. T., Macedo, M., Jankowski, K., O’Connell, C., & Neill, C. Modeling nitrous oxide emissions from large-scale intensive cropping systems in the southern Amazon. Frontiers in Sustainable Food Systems, 5, (2021): 701416. https://doi.org/10.3389/fsufs.2021.701416.
    Description: Nitrogen (N) fertilizer use is rapidly intensifying on tropical croplands and has the potential to increase emissions of the greenhouse gas, nitrous oxide (N2O). Since about 2005 Mato Grosso (MT), Brazil has shifted from single-cropped soybeans to double-cropping soybeans with maize, and now produces 1.5% of the world's maize. This production shift required an increase in N fertilization, but the effects on N2O emissions are poorly known. We calibrated the process-oriented biogeochemical DeNitrification-DeComposition (DNDC) model to simulate N2O emissions and crop production from soybean and soybean-maize cropping systems in MT. After model validation with field measurements and adjustments for hydrological properties of tropical soils, regional simulations suggested N2O emissions from soybean-maize cropland increased almost fourfold during 2001–2010, from 1.1 ± 1.1 to 4.1 ± 3.2 Gg 1014 N-N2O. Model sensitivity tests showed that emissions were spatially and seasonably variable and especially sensitive to soil bulk density and carbon content. Meeting future demand for maize using current soybean area in MT might require either (a) intensifying 3.0 million ha of existing single soybean to soybean-maize or (b) increasing N fertilization to ~180 kg N ha−1 on existing 2.3 million ha of soybean-maize area. The latter strategy would release ~35% more N2O than the first. Our modifications of the DNDC model will improve estimates of N2O emissions from agricultural production in MT and other tropical areas, but narrowing model uncertainty will depend on more detailed field measurements and spatial data on soil and cropping management.
    Description: This work was supported by National Science Foundation (NSF#1257944) and CNPq-Ciências Sem Fronteiras Post-Doctoral Fellowship (249380/2013-7).
    Keywords: GHG emission ; Agriculture ; Nitrogen fertilization management ; Amazon ; Food system
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  • 33
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kalra, T. S., Ganju, N. K., Aretxabaleta, A. L., Carr, J. A., Defne, Z., & Moriarty, J. M. Modeling marsh dynamics using a 3-D coupled wave-flow-sediment model. Frontiers in Marine Science, 8, (2021): 740921, https://doi.org/10.3389/fmars.2021.740921.
    Description: Salt marshes are dynamic biogeomorphic systems that respond to external physical factors, including tides, sediment transport, and waves, as well as internal processes such as autochthonous soil formation. Predicting the fate of marshes requires a modeling framework that accounts for these processes in a coupled fashion. In this study, we implement two new marsh dynamic processes in the 3-D COAWST (coupled-ocean-atmosphere-wave sediment transport) model. The processes added are the erosion of the marsh edge scarp caused by lateral wave thrust from surface waves and vertical accretion driven by biomass production on the marsh platform. The sediment released from the marsh during edge erosion causes a change in bathymetry, thereby modifying the wave-energy reaching the marsh edge. Marsh vertical accretion due to biomass production is considered for a single vegetation species and is determined by the hydroperiod parameters (tidal datums) and the elevation of the marsh cells. Tidal datums are stored at user-defined intervals as a hindcast (on the order of days) and used to update the vertical growth formulation. Idealized domains are utilized to verify the lateral wave thrust formulation and show the dynamics of lateral wave erosion leading to horizontal retreat of marsh edge. The simulations of Reedy and Dinner Creeks within the Barnegat Bay estuary system demonstrate the model capability to account for both lateral wave erosion and vertical accretion due to biomass production in a realistic marsh complex. The simulations show that vertical accretion is dominated by organic deposition in the marsh interior, whereas deposition of mineral estuarine sediments occurs predominantly along the channel edges. The ability of the model to capture the fate of the sediment can be extended to model to simulate the impacts of future storms and relative sea-level rise (RSLR) scenarios on salt-marsh ecomorphodynamics.
    Description: This work was supported by USGS Coastal and Marine Hazards and Resources Program.
    Keywords: Marsh morphology ; Sediment transport ; Numerical model ; COAWST model ; Marsh accretion
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  • 34
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wigand, C., Oczkowski, A. J., Branoff, B. L., Eagle, M., Hanson, A., Martin, R. M., Balogh, S., Miller, K. M., Huertas, E., Loffredo, J., & Watson, E. B. Recent nitrogen storage and accumulation rates in mangrove soils exceed historic rates in the urbanized San Juan Bay Estuary (Puerto Rico, United States). Frontiers in Forests and Global Change, 4, (2021): 765896, https://doi.org/10.3389/ffgc.2021.765896.
    Description: Tropical mangrove forests have been described as “coastal kidneys,” promoting sediment deposition and filtering contaminants, including excess nutrients. Coastal areas throughout the world are experiencing increased human activities, resulting in altered geomorphology, hydrology, and nutrient inputs. To effectively manage and sustain coastal mangroves, it is important to understand nitrogen (N) storage and accumulation in systems where human activities are causing rapid changes in N inputs and cycling. We examined N storage and accumulation rates in recent (1970 – 2016) and historic (1930 – 1970) decades in the context of urbanization in the San Juan Bay Estuary (SJBE, Puerto Rico), using mangrove soil cores that were radiometrically dated. Local anthropogenic stressors can alter N storage rates in peri-urban mangrove systems either directly by increasing N soil fertility or indirectly by altering hydrology (e.g., dredging, filling, and canalization). Nitrogen accumulation rates were greater in recent decades than historic decades at Piñones Forest and Martin Peña East. Martin Peña East was characterized by high urbanization, and Piñones, by the least urbanization in the SJBE. The mangrove forest at Martin Peña East fringed a poorly drained canal and often received raw sewage inputs, with N accumulation rates ranging from 17.7 to 37.9 g m–2 y–1 in recent decades. The Piñones Forest was isolated and had low flushing, possibly exacerbated by river damming, with N accumulation rates ranging from 18.6 to 24.2 g m–2 y–1 in recent decades. Nearly all (96.3%) of the estuary-wide mangrove N (9.4 Mg ha–1) was stored in the soils with 7.1 Mg ha–1 sequestered during 1970–2017 (0–18 cm) and 2.3 Mg ha–1 during 1930–1970 (19–28 cm). Estuary-wide mangrove soil N accumulation rates were over twice as great in recent decades (0.18 ± 0.002 Mg ha–1y–1) than historically (0.08 ± 0.001 Mg ha–1y–1). Nitrogen accumulation rates in SJBE mangrove soils in recent times were twofold larger than the rate of human-consumed food N that is exported as wastewater (0.08 Mg ha–1 y–1), suggesting the potential for mangroves to sequester human-derived N. Conservation and effective management of mangrove forests and their surrounding watersheds in the Anthropocene are important for maintaining water quality in coastal communities throughout tropical regions.
    Description: Some funding was provided by the United States Geological Coastal and Marine Hazards and Resources Program.
    Keywords: Nitrogen storage ; Nitrogen accumulation ; Mangrove forest ; Wastewater ; Anthropogenic stressors ; Peri-urban mangrove ; Urbanization
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  • 35
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fouke, K. E., Wegman, M. E., Weber, S. A., Brady, E. B., Roman-Vendrell, C., & Morgan, J. R. Synuclein regulates synaptic vesicle clustering and docking at a vertebrate synapse. Frontiers in Cell and Developmental Biology, 9, (2021): 774650, https://doi.org/10.3389/fcell.2021.774650.
    Description: Neurotransmission relies critically on the exocytotic release of neurotransmitters from small synaptic vesicles (SVs) at the active zone. Therefore, it is essential for neurons to maintain an adequate pool of SVs clustered at synapses in order to sustain efficient neurotransmission. It is well established that the phosphoprotein synapsin 1 regulates SV clustering at synapses. Here, we demonstrate that synuclein, another SV-associated protein and synapsin binding partner, also modulates SV clustering at a vertebrate synapse. When acutely introduced to unstimulated lamprey reticulospinal synapses, a pan-synuclein antibody raised against the N-terminal domain of α-synuclein induced a significant loss of SVs at the synapse. Both docked SVs and the distal reserve pool of SVs were depleted, resulting in a loss of total membrane at synapses. In contrast, antibodies against two other abundant SV-associated proteins, synaptic vesicle glycoprotein 2 (SV2) and vesicle-associated membrane protein (VAMP/synaptobrevin), had no effect on the size or distribution of SV clusters. Synuclein perturbation caused a dose-dependent reduction in the number of SVs at synapses. Interestingly, the large SV clusters appeared to disperse into smaller SV clusters, as well as individual SVs. Thus, synuclein regulates clustering of SVs at resting synapses, as well as docking of SVs at the active zone. These findings reveal new roles for synuclein at the synapse and provide critical insights into diseases associated with α-synuclein dysfunction, such as Parkinson’s disease.
    Description: Funding support for this project was provided by the National Institutes of Health NINDS/NIA R01 NS078165 (to JM); University of Chicago Jeff Metcalf Fellowship Grant (to SW).
    Keywords: Exocytosis ; Endocytosis ; Synapsin ; Lamprey ; Liquid phase separation ; VAMP2
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  • 36
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zottoli, S. J., Faber, D. S., Hering, J., Dannhauer, A. C., & Northen, S. Survival and axonal outgrowth of the Mauthner cell following spinal cord crush does not drive post-injury startle responses. Frontiers in Cell and Developmental Biology, 9, (2021): 744191, https://doi.org/10.3389/fcell.2021.744191.
    Description: A pair of Mauthner cells (M-cells) can be found in the hindbrain of most teleost fish, as well as amphibians and lamprey. The axons of these reticulospinal neurons cross the midline and synapse on interneurons and motoneurons as they descend the length of the spinal cord. The M-cell initiates fast C-type startle responses (fast C-starts) in goldfish and zebrafish triggered by abrupt acoustic/vibratory stimuli. Starting about 70 days after whole spinal cord crush, less robust startle responses with longer latencies manifest in adult goldfish, Carassius auratus. The morphological and electrophysiological identifiability of the M-cell provides a unique opportunity to study cellular responses to spinal cord injury and the relation of axonal regrowth to a defined behavior. After spinal cord crush at the spinomedullary junction about one-third of the damaged M-axons of adult goldfish send at least one sprout past the wound site between 56 and 85 days postoperatively. These caudally projecting sprouts follow a more lateral trajectory relative to their position in the fasciculus longitudinalis medialis of control fish. Other sprouts, some from the same axon, follow aberrant pathways that include rostral projections, reversal of direction, midline crossings, neuromas, and projection out the first ventral root. Stimulating M-axons in goldfish that had post-injury startle behavior between 198 and 468 days postoperatively resulted in no or minimal EMG activity in trunk and tail musculature as compared to control fish. Although M-cells can survive for at least 468 day (∼1.3 years) after spinal cord crush, maintain regrowth, and elicit putative trunk EMG responses, the cell does not appear to play a substantive role in the emergence of acoustic/vibratory-triggered responses. We speculate that aberrant pathway choice of this neuron may limit its role in the recovery of behavior and discuss structural and functional properties of alternative candidate neurons that may render them more supportive of post-injury startle behavior.
    Description: Support for this research came in part from NSF grant (BNS 8809445), NIH grant (2-P01-NS24707-09), and HHMI and Essel Foundation grants to Williams College.
    Keywords: Spinal cord regeneration ; Functional recovery ; Startle responses ; Mauthner cells ; Adult goldfish
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  • 37
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ruff, S. E. Editorial: microbial communities and metabolisms involved in the degradation of cellular and extracellular organic biopolymers. Frontiers in Microbiology, 12, (2022): 802619, https://doi.org/10.3389/fmicb.2021.802619.
    Description: Most organic matter on Earth occurs in the form of macromolecules and complex biopolymers, which include the building blocks of every organism. Plant, animal, fungal, and microbial cells largely consist of macromolecules belonging to four compound classes: proteins, polysaccharides, nucleic acids, and lipids (Figure 1). The percentage of these compounds per dry weight can vary greatly between lineages, but also between individuals of the same species or developmental stages of the same organism. Living and lysing cells release a substantial quantity and variety of macromolecules to the environment. These compounds often contain nitrogen, phosphorus, and sulfur, in addition to carbon, and are thus ideal food sources for heterotrophic organisms. Although the degradation of biopolymers and macromolecules has received considerable attention, many knowledge gaps remain, particularly in very complex ecosystems such as soils and sediments.
    Keywords: Macromolecule ; Necromass ; Heterotrophic microorganism ; Protein ; Polysaccharide ; Carbohydrate ; Nucleic acid ; Lipid
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  • 38
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Klein, S., Frazier, V., Readdean, T., Lucas, E., Diaz-Jimenez, E. P., Sogin, M., Ruff, E. S., & Echeverri, K. Common environmental pollutants negatively affect development and regeneration in the sea anemone Nematostella vectensis holobiont. Frontiers in Ecology and Evolution, 9, (2021): 786037, https://doi.org/10.3389/fevo.2021.786037.
    Description: The anthozoan sea anemone Nematostella vectensis belongs to the phylum of cnidarians which also includes jellyfish and corals. Nematostella are native to United States East Coast marsh lands, where they constantly adapt to changes in salinity, temperature, oxygen concentration and pH. Its natural ability to continually acclimate to changing environments coupled with its genetic tractability render Nematostella a powerful model organism in which to study the effects of common pollutants on the natural development of these animals. Potassium nitrate, commonly used in fertilizers, and Phthalates, a component of plastics are frequent environmental stressors found in coastal and marsh waters. Here we present data showing how early exposure to these pollutants lead to dramatic defects in development of the embryos and eventual mortality possibly due to defects in feeding ability. Additionally, we examined the microbiome of the animals and identified shifts in the microbial community that correlated with the type of water that was used to grow the animals, and with their exposure to pollutants.
    Description: This work was funded by a Pilot Program award to ER and KE from the Microbiome Center at the University of Chicago. The microbiome sequencing was funded by a grant from the McDonnell Initiative to ER. KE was supported by a grant from NICHD R01 HD092451, start-up funds from the MBL and funding from the Owens Family Foundation. ER was supported by start-up funds from the MBL and MLS receives support from the Unger G. Vetlesen Foundation.
    Keywords: Nematostella ; Growth ; Microbiome ; Stressors ; Development
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  • 39
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Katz, H. R., Arcese, A. A., Bloom, O., & Morgan, J. R. Activating transcription factor 3 (ATF3) is a highly conserved pro-regenerative transcription factor in the vertebrate nervous system. Frontiers in Cell and Developmental Biology, 10, (2022): 824036, https://doi.org/10.3389/fcell.2022.824036.
    Description: The vertebrate nervous system exhibits dramatic variability in regenerative capacity across species and neuronal populations. For example, while the mammalian central nervous system (CNS) is limited in its regenerative capacity, the CNS of many other vertebrates readily regenerates after injury, as does the peripheral nervous system (PNS) of mammals. Comparing molecular responses across species and tissues can therefore provide valuable insights into both conserved and distinct mechanisms of successful regeneration. One gene that is emerging as a conserved pro-regenerative factor across vertebrates is activating transcription factor 3 (ATF3), which has long been associated with tissue trauma. A growing number of studies indicate that ATF3 may actively promote neuronal axon regrowth and regeneration in species ranging from lampreys to mammals. Here, we review data on the structural and functional conservation of ATF3 protein across species. Comparing RNA expression data across species that exhibit different abilities to regenerate their nervous system following traumatic nerve injury reveals that ATF3 is consistently induced in neurons within the first few days after injury. Genetic deletion or knockdown of ATF3 expression has been shown in mouse and zebrafish, respectively, to reduce axon regeneration, while inducing ATF3 promotes axon sprouting, regrowth, or regeneration. Thus, we propose that ATF3 may be an evolutionarily conserved regulator of neuronal regeneration. Identifying downstream effectors of ATF3 will be a critical next step in understanding the molecular basis of vertebrate CNS regeneration.
    Description: This work was supported by: a Morton Cure Paralysis Fund Research Grant (to HK); a NIH/NINDS R03 Research Grant (No. 1R03NS078519) and the New York State Spinal Cord Injury Research Board (to OB); and the Marine Biological Laboratory Eugene Bell Center Endowment, Rowe Endowment for Regenerative Biology, and Charles Evans Research Development award (to JM).
    Keywords: Regeneration ; Spinal cord injury ; Zebrafish ; Lamprey ; Dorsal root ganglia (DRG) neurons
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  • 40
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chowdhury, P. R., Golas, S. M., Alteio, L., Stevens, J. T. E., Billings, A. F., Blanchard, J. L., Melillo, J. M., & DeAngelis, K. M. The transcriptional response of soil bacteria to long-term warming and short-term seasonal fluctuations in a terrestrial forest. Frontiers in Microbiology, 12, (2021): 666558, https://doi.org/10.3389/fmicb.2021.666558.
    Description: Terrestrial ecosystems are an important carbon store, and this carbon is vulnerable to microbial degradation with climate warming. After 30 years of experimental warming, carbon stocks in a temperate mixed deciduous forest were observed to be reduced by 30% in the heated plots relative to the controls. In addition, soil respiration was seasonal, as was the warming treatment effect. We therefore hypothesized that long-term warming will have higher expressions of genes related to carbohydrate and lipid metabolism due to increased utilization of recalcitrant carbon pools compared to controls. Because of the seasonal effect of soil respiration and the warming treatment, we further hypothesized that these patterns will be seasonal. We used RNA sequencing to show how the microbial community responds to long-term warming (~30 years) in Harvard Forest, MA. Total RNA was extracted from mineral and organic soil types from two treatment plots (+5°C heated and ambient control), at two time points (June and October) and sequenced using Illumina NextSeq technology. Treatment had a larger effect size on KEGG annotated transcripts than on CAZymes, while soil types more strongly affected CAZymes than KEGG annotated transcripts, though effect sizes overall were small. Although, warming showed a small effect on overall CAZymes expression, several carbohydrate-associated enzymes showed increased expression in heated soils (~68% of all differentially expressed transcripts). Further, exploratory analysis using an unconstrained method showed increased abundances of enzymes related to polysaccharide and lipid metabolism and decomposition in heated soils. Compared to long-term warming, we detected a relatively small effect of seasonal variation on community gene expression. Together, these results indicate that the higher carbohydrate degrading potential of bacteria in heated plots can possibly accelerate a self-reinforcing carbon cycle-temperature feedback in a warming climate.
    Description: Funding for this study was provided by the Department of Energy Terrestrial Ecosystem Sciences program under contract number DE-SC0010740. Sites for sample collection were maintained with funding in part from the National Science Foundation (NSF) Long-Term Ecological Research (DEB 1237491) and the NSF Long-Term Research in Environmental Biology (DEB 1456528) programs.
    Keywords: Meta-transcriptomes ; Microbial ; Terrestrial ; Carbon cycle ; Global warming
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  • 41
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Uhran, B., Windham-Myers, L., Bliss, N., Nahlik, A. M., Sundquist, E., & Stagg, C. L. Improved wetland soil organic carbon stocks of the conterminous U.S. through data harmonization. Frontiers in Soil Science, 1, (2021): 706701, https://doi.org/10.3389/fsoil.2021.706701.
    Description: Wetland soil stocks are important global repositories of carbon (C) but are difficult to quantify and model due to varying sampling protocols, and geomorphic/spatio-temporal discontinuity. Merging scales of soil-survey spatial extents with wetland-specific point-based data offers an explicit, empirical and updatable improvement for regional and continental scale soil C stock assessments. Agency-collected and community-contributed soil datasets were compared for representativeness and bias, with the goal of producing a harmonized national map of wetland soil C stocks with error quantification for wetland areas of the conterminous United States (CONUS) identified by the USGS National Landcover Change Dataset. This allowed an empirical predictive model of SOC density to be applied across the entire CONUS using relational %OC distribution alone. A broken-stick quantile-regression model identified %OC with its relatively high analytical confidence as a key predictor of SOC density in soil segments; soils 〈6% OC (hereafter, mineral wetland soils, 85% of the dataset) had a strong linear relationship of %OC to SOC density (RMSE = 0.0059, ~4% mean RMSE) and soils 〉6% OC (organic wetland soils, 15% of the dataset) had virtually no predictive relationship of %OC to SOC density (RMSE = 0.0348 g C cm−3, ~56% mean RMSE). Disaggregation by vegetation type or region did not alter the breakpoint significantly (6% OC) and did not improve model accuracies for inland and tidal wetlands. Similarly, SOC stocks in tidal wetlands were related to %OC, but without a mappable product for disaggregation to improve accuracy by soil class, region or depth. Our layered harmonized CONUS wetland soil maps revised wetland SOC stock estimates downward by 24% (9.5 vs. 12.5Pg C) with the overestimation being entirely an issue of inland organic wetland soils (35% lower than SSURGO-derived SOC stocks). Further, SSURGO underestimated soil carbon stocks at depth, as modeled wetland SOC stocks for organic-rich soils showed significant preservation downcore in the NWCA dataset (〈3% loss between 0 and 30 cm and 30 and 100 cm depths) in contrast to mineral-rich soils (37% downcore stock loss). Future CONUS wetland soil C assessments will benefit from focused attention on improved organic wetland soil measurements, land history, and spatial representativeness.
    Description: This project was funded through the U.S. Geological Survey's Land Carbon Program and a grant to ES through the U.S. Geological Survey's Community for Data Integration Program for generating cross-agency assessments.
    Keywords: Soil organic carbon ; Soil carbon density ; Wetland ; Organic matter ; Soil profile ; Soil carbon stock vulnerability
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    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sanchez Trivino, C. A., Landinez, M. P., Duran, S., Gomez, M. del P., & Nasi, E. Modulation of G(q)/PLC-mediated signaling by acute lithium exposure. Frontiers in Cellular Neuroscience, 16, (2022): 838939, https://doi.org/10.3389/fncel.2022.838939.
    Description: Although lithium has long been one of the most widely used pharmacological agents in psychiatry, its mechanisms of action at the cellular and molecular levels remain poorly understood. One of the targets of Li+ is the phosphoinositide pathway, but whereas the impact of Li+ on inositol lipid metabolism is well documented, information on physiological effects at the cellular level is lacking. We examined in two mammalian cell lines the effect of acute Li+ exposure on the mobilization of internal Ca2+ and phospholipase C (PLC)-dependent membrane conductances. We first corroborated by Western blots and immunofluorescence in HEK293 cells the presence of key signaling elements of a muscarinic PLC pathway (M1AchR, Gq, PLC-β1, and IP3Rs). Stimulation with carbachol evoked a dose-dependent mobilization of Ca, as determined with fluorescent indicators. This was due to release from internal stores and proved susceptible to the PLC antagonist U73122. Li+ exposure reproducibly potentiated the Ca response in a concentration-dependent manner extending to the low millimolar range. To broaden those observations to a neuronal context and probe potential Li modulation of electrical signaling, we next examined the cell line SHsy5y. We replicated the potentiating effects of Li on the mobilization of internal Ca, and, after characterizing the basic properties of the electrical response to cholinergic stimulation, we also demonstrated an equally robust upregulation of muscarinic membrane currents. Finally, by directly stimulating the signaling pathway at different links downstream of the receptor, the site of action of the observed Li effects could be narrowed down to the G protein and its interaction with PLC-β. These observations document a modulation of Gq/PLC/IP3-mediated signaling by acute exposure to lithium, reflected in distinct physiological changes in cellular responses.
    Description: This work was supported by DIB-Universidad Nacional de Colombia, grant Hermes No. 41821.
    Keywords: Lithium ; Phospholipase C ; Gq ; Calcium ; SHSY5Y ; HEK-293
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  • 43
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Winters, G., Teichberg, M., Reuter, H., Viana, I. G., & Willette, D. A. Editorial: seagrasses under times of change. Frontiers in Plant Science, 13, (2022): 870478, https://doi.org/10.3389/fpls.2022.870478.
    Description: Awareness of the ecological importance of seagrasses is growing due to recent attention to their role in carbon sequestration as a potential blue carbon sink (Fourqurean et al., 2012; Bedulli et al.), as well as their role in nutrient cycling (Romero et al., 2006), sediment stabilization (James et al., 2019), pathogen filtration (Lamb et al., 2017), and the formation of essential habitats for economically important marine species (Jackson et al., 2001; Jones et al.). Despite their importance and the increasing public and scientific awareness of seagrasses, simultaneous global (e.g., ocean warming, increase in frequency and severity of extreme events, introduction and spread of invasive species) and local (e.g., physical disturbances, eutrophication, and sedimentation) anthropogenic stressors continue to be the main causes behind the ongoing global decline of seagrass meadows (Orth et al., 2006; Waycott et al., 2009).
    Description: This research was partially funded through the BMBF project SEANARIOS (Seagrass scenarios under thermal and nutrient stress: FKZ 03F0826A) to HR and MT. MT was partially funded through the DFG project SEAMAC (Seagrass and macroalgal community dynamics and performance under environmental change; TE 1046/3-1). IV was supported by a postdoctoral research grant Juan de la Cierva-Incorporación (IJC2019-040554-I) and from MCIN/AEI /10.13039/501100011033 (Spain).
    Keywords: Seagrasses ; Climate change ; Eutrophication ; Responses of seagrasses to single and combined stressors ; Spatial-temporal modeling
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  • 44
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022]. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Suter, E. A., Pachiadaki, M., Taylor, G. T., & Edgcomb, V. P. Eukaryotic parasites are integral to a productive microbial food web in oxygen-depleted waters. Frontiers in Microbiology, 12, (2022): 764605, https://doi.org/10.3389/fmicb.2021.764605.
    Description: Oxygen-depleted water columns (ODWCs) host a diverse community of eukaryotic protists that change dramatically in composition over the oxic-anoxic gradient. In the permanently anoxic Cariaco Basin, peaks in eukaryotic diversity occurred in layers where dark microbial activity (chemoautotrophy and heterotrophy) were highest, suggesting a link between prokaryotic activity and trophic associations with protists. Using 18S rRNA gene sequencing, parasites and especially the obligate parasitic clade, Syndiniales, appear to be particularly abundant, suggesting parasitism is an important, but overlooked interaction in ODWC food webs. Syndiniales were also associated with certain prokaryotic groups that are often found in ODWCs, including Marinimicrobia and Marine Group II archaea, evocative of feedbacks between parasitic infection events, release of organic matter, and prokaryotic assimilative activity. In a network analysis that included all three domains of life, bacterial and archaeal taxa were putative bottleneck and hub species, while a large proportion of edges were connected to eukaryotic nodes. Inclusion of parasites resulted in a more complex network with longer path lengths between members. Together, these results suggest that protists, and especially protistan parasites, play an important role in maintaining microbial food web complexity, particularly in ODWCs, where protist diversity and microbial productivity are high, but energy resources are limited relative to euphotic waters.
    Description: This work was supported by the National Science Foundation (NSF) grants (OCE-1336082 to VE and OCE-1335436 and OCE-1259110 to GT). The Cyverse infrastructure and resources are supported by the NSF under Award Numbers DBI-0735191, DBI-1265383, and DBI-1743442 (www.cyverse.org). Support was also provided by the Faculty Scholarship and Academic Advancement Committee at Molloy College.
    Keywords: 18S (SSU) rRNA gene ; Oxygen-depleted environment ; Oxygen minimum zone (OMZ) ; Protist ; Syndiniales ; Parasite ; Eukaryotes ; Network analysis
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  • 45
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in D’Angelo, T., Goordial, J., Poulton, N., Seyler, L., Huber, J., Stepanauskas, R., & Orcutt, B. Oceanic crustal fluid single cell genomics complements metagenomic and metatranscriptomic surveys with orders of magnitude less sample volume. Frontiers in Microbiology, 12, (2022): 738231, https://doi.org/10.3389/fmicb.2021.738231.
    Description: Fluids circulating through oceanic crust play important roles in global biogeochemical cycling mediated by their microbial inhabitants, but studying these sites is challenged by sampling logistics and low biomass. Borehole observatories installed at the North Pond study site on the western flank of the Mid-Atlantic Ridge have enabled investigation of the microbial biosphere in cold, oxygenated basaltic oceanic crust. Here we test a methodology that applies redox-sensitive fluorescent molecules for flow cytometric sorting of cells for single cell genomic sequencing from small volumes of low biomass (approximately 103 cells ml–1) crustal fluid. We compare the resulting genomic data to a recently published paired metagenomic and metatranscriptomic analysis from the same site. Even with low coverage genome sequencing, sorting cells from less than one milliliter of crustal fluid results in similar interpretation of dominant taxa and functional profiles as compared to ‘omics analysis that typically filter orders of magnitude more fluid volume. The diverse community dominated by Gammaproteobacteria, Bacteroidetes, Desulfobacterota, Alphaproteobacteria, and Zetaproteobacteria, had evidence of autotrophy and heterotrophy, a variety of nitrogen and sulfur cycling metabolisms, and motility. Together, results indicate fluorescence activated cell sorting methodology is a powerful addition to the toolbox for the study of low biomass systems or at sites where only small sample volumes are available for analysis.
    Description: The borehole observatories that form the backbone of this project were funded by the Integrated Ocean Drilling Program (IODP, now the International Ocean Discovery Program), the United States National Science Foundation (NSF), and the Gordon and Betty Moore Foundation (grant GBMF1609). Cruise AT39-01 was funded by the NSF (OCE-1634025 to C. Geoff Wheat). Analyses were funded by the NSF (OCE-1536623 to BO; OIA-1826734 to RS, NP, and BO; and OCE-16435208 and OCE-1745589 to JH), the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) Science and Technology Center (via subawards from OIA-0939564 to BO and JH), and the NASA Exobiology program (80NSSC19K0466 to BO). This is C-DEBI publication 571.
    Keywords: Deep biosphere ; Oceanic crust ; Crustal fluid ; Single cell genomics ; Metatranscriptomics ; IODP ; CORKS ; North Pond
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  • 46
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marlow, J., Anderson, R., Reysenbach, A.-L., Seewald, J., Shank, T., Teske, A., Wanless, V., & Soule, S. New opportunities and untapped scientific potential in the abyssal ocean. Frontiers in Marine Science, 8, (2022): 798943, https://doi.org/10.3389./fmars.2021.798943
    Description: The abyssal ocean covers more than half of the Earth’s surface, yet remains understudied and underappreciated. In this Perspectives article, we mark the occasion of the Deep Submergence Vehicle Alvin’s increased depth range (from 4500 to 6500 m) to highlight the scientific potential of the abyssal seafloor. From a geologic perspective, ultra-slow spreading mid-ocean ridges, Petit Spot volcanism, transform faults, and subduction zones put the full life cycle of oceanic crust on display in the abyss, revealing constructive and destructive forces over wide ranges in time and space. Geochemically, the abyssal pressure regime influences the solubility of constituents such as silica and carbonate, and extremely high-temperature fluid-rock reactions in the shallow subsurface lead to distinctive and potentially unique geochemical profiles. Microbial residents range from low-abundance, low-energy communities on the abyssal plains to fast growing thermophiles at hydrothermal vents. Given its spatial extent and position as an intermediate zone between coastal and deep hadal settings, the abyss represents a lynchpin in global-scale processes such as nutrient and energy flux, population structure, and biogeographic diversity. Taken together, the abyssal ocean contributes critical ecosystem services while facing acute and diffuse anthropogenic threats from deep-sea mining, pollution, and climate change.
    Description: We would like to thank the National Science Foundation for their support through grants NSF 2009117 and 2129431 to SAS.
    Keywords: Abyssal ocean ; Geochemistry ; Microbiology ; Geology ; Ecology
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  • 47
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ostrander, C. M., Kendall, B., Gordon, G. W., Nielsen, S. G., Zheng, W., & Anbar, A. D. Shale heavy metal isotope records of low environmental O2 between two Archean Oxidation Events. Frontiers in Earth Science, 10, (2022): 833609, https://doi.org/10.3389/feart.2022.833609.
    Description: Evidence of molecular oxygen (O2) accumulation at Earth’s surface during the Archean (4.0–2.5 billion years ago, or Ga) seems to increase in its abundance and compelling nature toward the end of the eon, during the runup to the Great Oxidation Event. Yet, many details of this late-Archean O2 story remain under-constrained, such as the extent, tempo, and location of O2 accumulation. Here, we present a detailed Fe, Tl, and U isotope study of shales from a continuous sedimentary sequence deposited between ∼2.6 and ∼2.5 Ga and recovered from the Pilbara Craton of Western Australia (the Wittenoom and Mt. Sylvia formations preserved in drill core ABDP9). We find a progressive decrease in bulk-shale Fe isotope compositions moving up core (as low as δ56Fe = –0.78 ± 0.08‰; 2SD) accompanied by invariant authigenic Tl isotope compositions (average ε205TlA = –2.0 ± 0.6; 2SD) and bulk-shale U isotope compositions (average δ238U = –0.30 ± 0.05‰; 2SD) that are both not appreciably different from crustal rocks or bulk silicate Earth. While there are multiple possible interpretations of the decreasing δ56Fe values, many, to include the most compelling, invoke strictly anaerobic processes. The invariant and near-crustal ε205TlA and δ238U values point even more strongly to this interpretation, requiring reducing to only mildly oxidizing conditions over ten-million-year timescales in the late-Archean. For the atmosphere, our results permit either homogenous and low O2 partial pressures (between 10−6.3 and 10−6 present atmospheric level) or heterogeneous and spatially restricted O2 accumulation nearest the sites of O2 production. For the ocean, our results permit minimal penetration of O2 in marine sediments over large areas of the seafloor, at most sufficient for the burial of Fe oxide minerals but insufficient for the burial of Mn oxide minerals. The persistently low background O2 levels implied by our dataset between ∼2.6 and ∼2.5 Ga contrast with the timeframes immediately before and after, where strong evidence is presented for transient Archean Oxidation Events. Viewed in this broader context, our data support the emerging narrative that Earth’s initial oxygenation was a dynamic process that unfolded in fits-and-starts over many hundreds-of-millions of years.
    Description: This work was supported financially by the NSF Frontiers in Earth System Dynamics program award NSF EAR-1338810 (AA), a Woods Hole Oceanographic Institution Postdoctoral Scholarship (CO), a NSERC Discovery Grant (RGPIN-435930) and the Canada Research Chair program (BK), and a NASA Exobiology award 80NSSC20K0615 (SN).
    Keywords: Archean ; Thallium ; Iron ; Uranium ; Isotopes ; Oxygen
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  • 48
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cordone, A., D’Errico, G., Magliulo, M., Bolinesi, F., Selci, M., Basili, M., de Marco, R., Saggiomo, M., Rivaro, P., Giovannelli, D., & Mangoni, O. Bacterioplankton diversity and distribution in relation to phytoplankton community structure in the Ross Sea surface waters. Frontiers in Microbiology, 13, (2022): 722900, https://doi.org/10.3389/fmicb.2022.722900.
    Description: Primary productivity in the Ross Sea region is characterized by intense phytoplankton blooms whose temporal and spatial distribution are driven by changes in environmental conditions as well as interactions with the bacterioplankton community. However, the number of studies reporting the simultaneous diversity of the phytoplankton and bacterioplankton in Antarctic waters are limited. Here, we report data on the bacterial diversity in relation to phytoplankton community structure in the surface waters of the Ross Sea during the Austral summer 2017. Our results show partially overlapping bacterioplankton communities between the stations located in the Terra Nova Bay (TNB) coastal waters and the Ross Sea Open Waters (RSOWs), with a dominance of members belonging to the bacterial phyla Bacteroidetes and Proteobacteria. In the TNB coastal area, microbial communities were characterized by a higher abundance of sequences related to heterotrophic bacterial genera such as Polaribacter spp., together with higher phytoplankton biomass and higher relative abundance of diatoms. On the contrary, the phytoplankton biomass in the RSOW were lower, with relatively higher contribution of haptophytes and a higher abundance of sequences related to oligotrophic and mixothrophic bacterial groups like the Oligotrophic Marine Gammaproteobacteria (OMG) group and SAR11. We show that the rate of diversity change between the two locations is influenced by both abiotic (salinity and the nitrogen to phosphorus ratio) and biotic (phytoplankton community structure) factors. Our data provide new insight into the coexistence of the bacterioplankton and phytoplankton in Antarctic waters, suggesting that specific rather than random interaction contribute to the organic matter cycling in the Southern Ocean.
    Description: Samples were collected in the framework of Plankton biodiversity and functioning of the Ross Sea ecosystems in a changing Southern Ocean [P-ROSE – (PNRA16_00239)], and CDW Effects on glacial mElting and on Bulk of Fe in the Western Ross sea [CELEBeR – (PNRA16_00207)] projects – Italian National Antarctic Program – funded by the Ministry of Education, University and Research (MIUR), awarded to OM and PR, respectively. MM was supported by an Earth-Life Science Institute (Tokyo, Japan) visiting fellowship. This work was partially supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 948972) to DG.
    Keywords: Bacterial diversity ; Bacterioplankton ; Phytoplankton ; Ross Sea ; Antarctica
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  • 49
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Woods, D., Cheadle, M., John, B., German, C., & Van Dover, C. Making use of relicts: brisingid seastars aggregate on hydrothermally inactive sulfide chimneys near black smokers. Frontiers in Marine Science, 9, (2022): 774628, https://doi.org/10.3389/fmars.2022.774628.
    Description: When hydrothermal activity ceases at black-smoker chimneys on mid-ocean ridges, populations of associated invertebrates hosting chemoautotrophic endosymbionts decline and then disappear, but the chimneys can persist on the seabed as relicts. Suspension-feeding brisingid seastars colonize hydrothermally inactive (relict) chimneys on the East Pacific Rise (EPR), though their distribution relative to available hard substrata and proximity to hydrothermal activity is poorly documented. In this study, brisingid abundance on sulfide and basalt substrata was assessed along an ∼3,700 m ROV Jason II transect at the summit of Pito Seamount (SE Pacific; ∼2,275 m). Brisingids were non-randomly distributed, with highest densities (up to ∼300 m–2) on relict sulfides chimneys near active black smokers. Brisingids were relatively uncommon on basalt substrata, and absent on black smokers. We infer that both relict sulfide structures and proximity to black smokers play key roles in the maintenance of dense brisingid populations on Pito Seamount and in similar environments on the EPR. Our observations suggest that experimental introduction of “artificial” relict chimneys providing microtopographic relief could test whether such an approach might mitigate potential impacts of mineral extraction on populations of suspension-feeding invertebrates.
    Description: his project was partially supported by the Global Ocean Biodiversity Initiative through the International Climate Initiative (IKI; grant no. 16_IV_049_Global_A_Global Ocean Biodiversity Initiative GOBI). The Federal Ministry for the Environment, Nature Conservation, and Nuclear Safety (BMU) supports IKI on the basis of a decision adopted by the German Bundestag. DW was supported by Duke University funds to CV. CG’s participation was funded through WHOI’s Deep Ocean Exploration Institute. The AT37-08 cruise was funded by NSF OCE-1459462 (MC and BJ) and OCE-1459387 (J Gee, Scripps Institution of Oceanography).
    Keywords: Brisingid seastar ; East Pacific Rise (EPR) ; Hydrothermal vent ; Pito Seamount ; Nautile Hydrothermal Field ; Deep-sea mining (DSM) ; Black smoker ; Hydrothermally inactive sulfide
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  • 50
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zhang, Y., Hu, C., Kourafalou, V., Liu, Y., McGillicuddy, D., Barnes, B., & Hummon, J. Physical characteristics and evolution of a long-lasting mesoscale cyclonic eddy in the Straits of Florida. Frontiers in Marine Science, 9, (2022): 779450, https://doi.org/10.3389/fmars.2022.779450.
    Description: Ocean eddies along the Loop Current (LC)/Florida Current (FC) front have been studied for decades, yet studies of the entire evolution of individual eddies are rare. Here, satellite altimetry and ocean color observations, Argo profiling float records and shipborne acoustic Doppler current profiler (ADCP) measurements, together with high-resolution simulations from the global Hybrid Coordinate Ocean Model (HYCOM) are used to investigate the physical and biochemical properties, 3-dimensional (3-D) structure, and evolution of a long-lasting cyclonic eddy (CE) in the Straits of Florida (SoF) along the LC/FC front during April–August 2017. An Angular Momentum Eddy Detection Algorithm (AMEDA) is used to detect and track the CE during its evolution process. The long-lasting CE is found to form along the eastern edge of the LC on April 9th, and remained quasi-stationary for about 3 months (April 23 to July 15) off the Dry Tortugas (DT) until becoming much smaller due to its interaction with the FC and topography. This frontal eddy is named a Tortugas Eddy (TE) and is characterized with higher Chlorophyll (Chl) and lower temperature than surrounding waters, with a mean diameter of ∼100 km and a penetrating depth of ∼800 m. The mechanisms that contributed to the growth and evolution of this long-lasting TE are also explored, which reveal the significant role of oceanic internal instability.
    Description: This work was supported by the NASA student fellowship program “Future Investigators in NASA Earth and Space Science and Technology” (FINESST, 80NSSC19K1358), the National Academies of Sciences, Engineering and Medicine (NASEM) UGOS-1 (2000009918), the NOAA IOOS SECOORA Program [IOOS.21(097)USF.BW.OBS.1], and the NOAA RESTORE Science Program (NA17NOS4510099).
    Keywords: Satellite altimetry ; Ocean color ; Argo profiling float ; ADCP ; Global HYCOM ; Cyclonic eddy ; Straits of Florida ; Dry Tortugas
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  • 51
    Publication Date: 2022-10-20
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Duguid, Z., & Camilli, R. Improving resource management for unattended observation of the marginal ice zone using autonomous underwater gliders. Frontiers in Robotics and AI, 7, (2020): 579256, https://doi.org/10.3389/frobt.2020.579256.
    Description: We present control policies for use with a modified autonomous underwater glider that are intended to enable remote launch/recovery and long-range unattended survey of the Arctic's marginal ice zone (MIZ). This region of the Arctic is poorly characterized but critical to the dynamics of ice advance and retreat. Due to the high cost of operating support vessels in the Arctic, the proposed glider architecture minimizes external infrastructure requirements for navigation and mission updates to brief and infrequent satellite updates on the order of once per day. This is possible through intelligent power management in combination with hybrid propulsion, adaptive velocity control, and dynamic depth band selection based on real-time environmental state estimation. We examine the energy savings, range improvements, decreased communication requirements, and temporal consistency that can be attained with the proposed glider architecture and control policies based on preliminary field data, and we discuss a future MIZ survey mission concept in the Arctic. Although the sensing and control policies presented here focus on under ice missions with an unattended underwater glider, they are hardware independent and are transferable to other robotic vehicle classes, including in aerial and space domains.
    Description: Support for this research was provided through NASA PSTAR Grant #NNX16AL08G and the National Science Foundation Navigating the New Arctic grant #1839063.
    Keywords: Autonomous underwater glider ; Under-ice ; Long-range ; Onboard acoustic sensing ; Environment state estimation ; Marginal ice zone ; Adaptive control ; Energy efficiency
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  • 52
    Publication Date: 2022-10-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cadigan, J., Bekkaye, J., Jafari, N., Zhu, L., Booth, A., Chen, Q., Raubenheimer, B., Harris, B., O’Connor, C., Lane, R., Kemp, G., Day, J., Day, J., & Ulloa, H. Impacts of coastal infrastructure on shoreline response to major hurricanes in southwest Louisiana. Frontiers in Built Environment, 8, (2022): 885215. https://doi.org/10.3389/fbuil.2022.885215.
    Description: The Rockefeller Wildlife Refuge, located along the Chenier Plain in Southwest Louisiana, was the location of the sequential landfall of two major hurricanes in the 2020 hurricane season. To protect the rapidly retreating coastline along the Refuge, a system of breakwaters was constructed, which was partially completed by the 2020 hurricane season. Multi-institutional, multi-disciplinary rapid response deployments of wave gauges, piezometers, geotechnical measurements, vegetation sampling, and drone surveys were conducted before and after Hurricanes Laura and Delta along two transects in the Refuge; one protected by a breakwater system and one which was the natural, unprotected shoreline. Geomorphological changes were similar on both transects after Hurricane Laura, while after Delta there was higher inland sediment deposition on the natural shoreline. Floodwaters drained from the transect with breakwater protection more slowly than the natural shoreline, though topography profiles are similar, indicating a potential dampening or complex hydrodynamic interactions between the sediment—wetland—breakwater system. In addition, observations of a fluidized mud deposit in Rollover Bayou in the Refuge are presented and discussed in context of the maintenance of wetland elevation and stability in the sediment starved Chenier Plain.
    Description: Funding for the study has been partially provided by the National Science Foundation through grants NSF 2139882, 2139883, 1829136, 1848650, and 1939275, as well as through the United States Army Corps of Engineers Regional Sediment Management program. Student support provided through the National Science Foundation Graduate Research Fellowship Program and the Louisiana Coastal Science Assistantship Program.
    Keywords: Hurricane impact ; Wave attenuation and erosion control ; Storm surge ; Chenier plain ; Breakwater ; Field measured data ; Natural infrastructure ; Shoreline retreat
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  • 53
    Publication Date: 2022-10-20
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cavanaugh, K. C., Bell, T., Costa, M., Eddy, N. E., Gendall, L., Gleason, M. G., Hessing-Lewis, M., Martone, R., McPherson, M., Pontier, O., Reshitnyk, L., Beas-Luna, R., Carr, M., Caselle, J. E., Cavanaugh, K. C., Miller, R. F., Hamilton, S., Heady, W. N., Hirsh, H. K., Hohman R., Lee L. C., Lorda J., Ray J., Reed D. C., Saccomanno V. R., Schroeder, S. B. A review of the opportunities and challenges for using remote sensing for management of surface-canopy forming kelps. Frontiers in Marine Science, 8, (2021): 753531, https://doi.org/10.3389/fmars.2021.753531.
    Description: Surface-canopy forming kelps provide the foundation for ecosystems that are ecologically, culturally, and economically important. However, these kelp forests are naturally dynamic systems that are also threatened by a range of global and local pressures. As a result, there is a need for tools that enable managers to reliably track changes in their distribution, abundance, and health in a timely manner. Remote sensing data availability has increased dramatically in recent years and this data represents a valuable tool for monitoring surface-canopy forming kelps. However, the choice of remote sensing data and analytic approach must be properly matched to management objectives and tailored to the physical and biological characteristics of the region of interest. This review identifies remote sensing datasets and analyses best suited to address different management needs and environmental settings using case studies from the west coast of North America. We highlight the importance of integrating different datasets and approaches to facilitate comparisons across regions and promote coordination of management strategies.
    Description: Funding was provided by the Nature Conservancy (Grant No. 02042019-5719), the U.S. National Science Foundation (Grant No. OCE 1831937), and the U.S. Department of Energy ARPA-E (Grant No. DE-AR0000922).
    Keywords: Kelp forest ; Remote sensing ; North America ; Coastal management ; Kelp management ; Bull kelp ; Giant kelp
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  • 54
    Publication Date: 2022-10-20
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Oliveira, T. C. A., Lin, Y.-T., & Porter, M. B. Underwater sound propagation modeling in a complex shallow water environment. Frontiers in Marine Science, 8, (2021): 751327, https://doi.org/10.3389/fmars.2021.751327.
    Description: Three-dimensional (3D) effects can profoundly influence underwater sound propagation in shallow-water environments, hence, affecting the underwater soundscape. Various geological features and coastal oceanographic processes can cause horizontal reflection, refraction, and diffraction of underwater sound. In this work, the ability of a parabolic equation (PE) model to simulate sound propagation in the extremely complicated shallow water environment of Long Island Sound (United States east coast) is investigated. First, the 2D and 3D versions of the PE model are compared with state-of-the-art normal mode and beam tracing models for two idealized cases representing the local environment in the Sound: (i) a 2D 50-m flat bottom and (ii) a 3D shallow water wedge. After that, the PE model is utilized to model sound propagation in three realistic local scenarios in the Sound. Frequencies of 500 and 1500 Hz are considered in all the simulations. In general, transmission loss (TL) results provided by the PE, normal mode and beam tracing models tend to agree with each other. Differences found emerge with (1) increasing the bathymetry complexity, (2) expanding the propagation range, and (3) approaching the limits of model applicability. The TL results from 3D PE simulations indicate that sound propagating along sand bars can experience significant 3D effects. Indeed, for the complex shallow bathymetry found in some areas of Long Island Sound, it is challenging for the models to track the interference effects in the sound pattern. Results emphasize that when choosing an underwater sound propagation model for practical applications in a complex shallow-water environment, a compromise will be made between the numerical model accuracy, computational time, and validity.
    Description: TO thanks FCT/MCTES for the financial support to CESAM (UIDP/50017/2020 + UIDB/50017/2020), through national funds. The funding support from the Office of Naval Research for Y-TL via the grant N00014-21-1-2416 was also acknowledged. MP was supported by the Office of Naval Research under contracts N68335-17-C-0553 and N00014-18-C-7007.
    Keywords: Underwater soundscape ; 3D PE ; Bellhop3D ; Kraken3D ; Long Island Sound ; Sand bars
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  • 55
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jiang, L.-Q., Pierrot, D., Wanninkhof, R., Feely, R. A., Tilbrook, B., Alin, S., Barbero, L., Byrne, R. H., Carter, B. R., Dickson, A. G., Gattuso, J.-P., Greeley, D., Hoppema, M., Humphreys, M. P., Karstensen, J., Lange, N., Lauvset, S. K., Lewis, E. R., Olsen, A., Pérez, F. F., Sabine, C., Sharp, J. D., Tanhua, T., Trull, T. W., Velo, A., Allegra, A. J., Barker, P., Burger, E., Cai, W-J., Chen, C-T. A., Cross, J., Garcia, H., Hernandez-Ayon J. M., Hu, X., Kozyr, A., Langdon, C., Lee., K, Salisbury, J., Wang, Z. A., & Xue, L. Best practice data standards for discrete chemical oceanographic observations. Frontiers in Marine Science, 8, (2022): 705638, https://doi.org/10.3389/fmars.2021.705638.
    Description: Effective data management plays a key role in oceanographic research as cruise-based data, collected from different laboratories and expeditions, are commonly compiled to investigate regional to global oceanographic processes. Here we describe new and updated best practice data standards for discrete chemical oceanographic observations, specifically those dealing with column header abbreviations, quality control flags, missing value indicators, and standardized calculation of certain properties. These data standards have been developed with the goals of improving the current practices of the scientific community and promoting their international usage. These guidelines are intended to standardize data files for data sharing and submission into permanent archives. They will facilitate future quality control and synthesis efforts and lead to better data interpretation. In turn, this will promote research in ocean biogeochemistry, such as studies of carbon cycling and ocean acidification, on regional to global scales. These best practice standards are not mandatory. Agencies, institutes, universities, or research vessels can continue using different data standards if it is important for them to maintain historical consistency. However, it is hoped that they will be adopted as widely as possible to facilitate consistency and to achieve the goals stated above.
    Description: Funding for L-QJ and AK was from NOAA Ocean Acidification Program (OAP, Project ID: 21047) and NOAA National Centers for Environmental Information (NCEI) through NOAA grant NA19NES4320002 [Cooperative Institute for Satellite Earth System Studies (CISESS)] at the University of Maryland/ESSIC. BT was in part supported by the Australia’s Integrated Marine Observing System (IMOS), enabled through the National Collaborative Research Infrastructure Strategy (NCRIS). AD was supported in part by the United States National Science Foundation. AV and FP were supported by BOCATS2 Project (PID2019-104279GB-C21/AEI/10.13039/501100011033) funded by the Spanish Research Agency and contributing to WATER:iOS CSIC interdisciplinary thematic platform. MH was partly funded by the European Union’s Horizon 2020 Research and Innovation Program under grant agreement N°821001 (SO-CHIC).
    Keywords: Data standard for chemical oceanography ; Discrete chemical oceanographic observations ; Column header abbreviations ; WOCE WHP exchange formats ; Quality control flags ; Content vs. concentration ; CO2SYS ; TEOS-10
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  • 56
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Liu, S., Longnecker, K., Kujawinski, E., Vergin, K., Bolaños, L., Giovannoni, S., Parsons, R., Opalk, K., Halewood, E., Hansell, D., Johnson, R., Curry, R., & Carlson, C. Linkages among dissolved organic matter export, dissolved metabolites, and associated microbial community structure response in the northwestern Sargasso Sea on a seasonal scale. Frontiers in Microbiology, 13, (2022): 833252, https://doi.org/10.3389/fmicb.2022.833252.
    Description: Deep convective mixing of dissolved and suspended organic matter from the surface to depth can represent an important export pathway of the biological carbon pump. The seasonally oligotrophic Sargasso Sea experiences annual winter convective mixing to as deep as 300 m, providing a unique model system to examine dissolved organic matter (DOM) export and its subsequent compositional transformation by microbial oxidation. We analyzed biogeochemical and microbial parameters collected from the northwestern Sargasso Sea, including bulk dissolved organic carbon (DOC), total dissolved amino acids (TDAA), dissolved metabolites, bacterial abundance and production, and bacterial community structure, to assess the fate and compositional transformation of DOM by microbes on a seasonal time-scale in 2016–2017. DOM dynamics at the Bermuda Atlantic Time-series Study site followed a general annual trend of DOC accumulation in the surface during stratified periods followed by downward flux during winter convective mixing. Changes in the amino acid concentrations and compositions provide useful indices of diagenetic alteration of DOM. TDAA concentrations and degradation indices increased in the mesopelagic zone during mixing, indicating the export of a relatively less diagenetically altered (i.e., more labile) DOM. During periods of deep mixing, a unique subset of dissolved metabolites, such as amino acids, vitamins, and benzoic acids, was produced or lost. DOM export and compositional change were accompanied by mesopelagic bacterial growth and response of specific bacterial lineages in the SAR11, SAR202, and SAR86 clades, Acidimicrobiales, and Flavobacteria, during and shortly following deep mixing. Complementary DOM biogeochemistry and microbial measurements revealed seasonal changes in DOM composition and diagenetic state, highlighting microbial alteration of the quantity and quality of DOM in the ocean.
    Description: This project was funded by the Simons Foundation International’s BIOS-SCOPE program and US National Science Foundation (NSF OCE-1756105 for BATS cruises).
    Keywords: Dissolved organic matter ; Amino acids ; Metabolites ; Bacterioplankton ; Sargasso Sea ; Seasonal ; Mixing
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  • 57
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Matabos, M., Barreyre, T., Juniper, S., Cannat, M., Kelley, D., Alfaro-Lucas, J., Chavagnac, V., Colaço, A., Escartin, J., Escobar, E., Fornari, D., Hasenclever, J., Huber, J., Laës-Huon, A., Lantéri, N., Levin, L., Mihaly, S., Mittelstaedt, E., Pradillon, F., Lantéri, N., Levin, L. A., Mihaly, S., Mittelstaedt, E., Pradillon, F., Sarradin, P-M., Sarrazin, J., Tomasi, B., Venkatesan, R., & Vic, C. Integrating Multidisciplinary Observations in Vent Environments (IMOVE): decadal progress in deep-sea observatories at hydrothermal vents. Frontiers in Marine Science, 9, (2022): 866422, https://doi.org/10.3389/fmars.2022.866422.
    Description: The unique ecosystems and biodiversity associated with mid-ocean ridge (MOR) hydrothermal vent systems contrast sharply with surrounding deep-sea habitats, however both may be increasingly threatened by anthropogenic activity (e.g., mining activities at massive sulphide deposits). Climate change can alter the deep-sea through increased bottom temperatures, loss of oxygen, and modifications to deep water circulation. Despite the potential of these profound impacts, the mechanisms enabling these systems and their ecosystems to persist, function and respond to oceanic, crustal, and anthropogenic forces remain poorly understood. This is due primarily to technological challenges and difficulties in accessing, observing and monitoring the deep-sea. In this context, the development of deep-sea observatories in the 2000s focused on understanding the coupling between sub-surface flow and oceanic and crustal conditions, and how they influence biological processes. Deep-sea observatories provide long-term, multidisciplinary time-series data comprising repeated observations and sampling at temporal resolutions from seconds to decades, through a combination of cabled, wireless, remotely controlled, and autonomous measurement systems. The three existing vent observatories are located on the Juan de Fuca and Mid-Atlantic Ridges (Ocean Observing Initiative, Ocean Networks Canada and the European Multidisciplinary Seafloor and water column Observatory). These observatories promote stewardship by defining effective environmental monitoring including characterizing biological and environmental baseline states, discriminating changes from natural variations versus those from anthropogenic activities, and assessing degradation, resilience and recovery after disturbance. This highlights the potential of observatories as valuable tools for environmental impact assessment (EIA) in the context of climate change and other anthropogenic activities, primarily ocean mining. This paper provides a synthesis on scientific advancements enabled by the three observatories this last decade, and recommendations to support future studies through international collaboration and coordination. The proposed recommendations include: i) establishing common global scientific questions and identification of Essential Ocean Variables (EOVs) specific to MORs, ii) guidance towards the effective use of observatories to support and inform policies that can impact society, iii) strategies for observatory infrastructure development that will help standardize sensors, data formats and capabilities, and iv) future technology needs and common sampling approaches to answer today’s most urgent and timely questions.
    Description: The first workshop in Bergen was additionally funded by the K.G. Jebsen Centre for Deep Sea Research and the University of Bergen. The second workshop was supported by ISblue project, Interdisciplinary graduate school for the blue planet (ANR-17-EURE-0015) and co-funded by a grant from the French government under the program “Investissements d’Avenir”. Additional funding was provided by Ifremer, and the départment du Finistère. The operation and maintenance of the EMSO-Azores observatory is funded by the by the EMSO-FR Research Infrastructure (MESR), which is managed by an Ifremer-CNRS collaboration. The operation and maintenance of the Endeavour observatory is funded by the Canada Foundation for Innovation’s Major Science Infrastructure program and the Department of Fisheries and Oceans (Canada). The operation and maintenance of the Axial Seamount observatory is funded by the National Science Foundation as part of the Ocean Observatories Initiative Regional Cabled Array. MM, JS and PMS acknowledge funding from the EU Horizon 2020 iAtlantic project (Grant Agreement No. 818123). AC was supported by the Operational Program AZORES 2020, through the Fund 01-0145-FEDER-1279 000140 “MarAZ Researchers: Consolidate a body of researchers in Marine Sciences in the Azores” of the European Union. She was also supported by FCT – Foundation for Science and Technology, I.P., under the project UIDB/05634/2020 and UIDP/05634/2020 and through the Regional Government of the Azores through the initiative to support the Research Centers of the University of the Azores and through the project M1.1.A/REEQ.CIENTÍFICO UI&D/2021/010.
    Keywords: Essential ocean variables (EOVs) ; Essential biological variables (EBVs) ; Mid-ocean ridge (MOR) ; Sensors, seabed platforms ; Vent fluid dynamics ; Vent communities dynamics
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  • 58
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cohen, N., Alexander, H., Krinos, A., Hu, S., & Lampe, R. Marine microeukaryotem metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications. Frontiers in Marine Science, 9, (2022): 867007, https://doi.org/10.3389/fmars.2022.867007.
    Description: Microeukaryotes (protists) serve fundamental roles in the marine environment as contributors to biogeochemical nutrient cycling and ecosystem function. Their activities can be inferred through metatranscriptomic investigations, which provide a detailed view into cellular processes, chemical-biological interactions in the environment, and ecological relationships among taxonomic groups. Established workflows have been individually put forth describing biomass collection at sea, laboratory RNA extraction protocols, and bioinformatic processing and computational approaches. Here, we present a compilation of current practices and lessons learned in carrying out metatranscriptomics of marine pelagic protistan communities, highlighting effective strategies and tools used by practitioners over the past decade. We anticipate that these guidelines will serve as a roadmap for new marine scientists beginning in the realms of molecular biology and/or bioinformatics, and will equip readers with foundational principles needed to delve into protistan metatranscriptomics.
    Description: We acknowledge funding support from the University of Georgia Skidaway Institute of Oceanography (to NRC), National Science Foundation (NSF) (OCE-1948025 to HA), and Department of Energy Computational Science Graduate Fellowship (DE-SC0020347 to AIK). SKH participation was supported through NSF OCE-1947776.
    Keywords: Metatranscriptomics ; Phytoplankton ; Biological oceanography ; Microbial ecology ; Bioinformatics
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  • 59
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cavaco, M. A., Bhatia, M. P., Hawley, A. K., Torres-Beltran, M., Johnson, W. M., Longnecker, K., Konwar, K., Kujawinski, E. B., & Hallam, S. J. Pathway-centric analysis of microbial metabolic potential and expression along nutrient and energy gradients in the western Atlantic Ocean. Frontiers in Marine Science, 9, (2022): 867310, https://doi.org/10.3389/fmars.2022.867310.
    Description: Microbial communities play integral roles in driving nutrient and energy transformations in the ocean, collectively contributing to fundamental biogeochemical cycles. Although it is well known that these communities are stratified within the water column, there remains limited knowledge of how metabolic pathways are distributed and expressed. Here, we investigate pathway distribution and expression patterns from surface (5 m) to deep dark ocean (4000 m) at three stations along a 2765 km transect in the western South Atlantic Ocean. This study is based on new data, consisting of 43 samples for 16S rRNA gene sequencing, 20 samples for metagenomics and 19 samples for metatranscriptomics. Consistent with previous observations, we observed vertical zonation of microbial community structure largely partitioned between light and dark ocean waters. The metabolic pathways inferred from genomic sequence information and gene expression stratified with depth. For example, expression of photosynthetic pathways increased in sunlit waters. Conversely, expression of pathways related to carbon conversion processes, particularly those involving recalcitrant and organic carbon degradation pathways (i.e., oxidation of formaldehyde) increased in dark ocean waters. We also observed correlations between indicator taxa for specific depths with the selective expression of metabolic pathways. For example, SAR202, prevalent in deep waters, was strongly correlated with expression of the methanol oxidation pathway. From a biogeographic perspective, microbial communities along the transect encoded similar metabolic potential with some latitudinal stratification in gene expression. For example, at a station influenced by input from the Amazon River, expression of pathways related to oxidative stress was increased. Finally, when pairing distinct correlations between specific particulate metabolites (e.g., DMSP, AMP and MTA) and both the taxonomic microbial community and metatranscriptomic pathways across depth and space, we were able to observe how changes in the marine metabolite pool may be influenced by microbial function and vice versa. Taken together, these results indicate that marine microbial communities encode a core repertoire of widely distributed metabolic pathways that are differentially regulated along nutrient and energy gradients. Such pathway distribution patterns are consistent with robustness in microbial food webs and indicate a high degree of functional redundancy.
    Description: This work was funded by the NSF Division of Ocean Sciences (Grant no. OCE-1154320 to EK and KL) and a small (“Microbial controls on marine organic carbon cycling”) and large (“Marine microbial communities from the Southern Atlantic Ocean transect to study dissolved organic matter and carbon cycling”) community sequencing grants from the Joint Genome Institute (US Department of Energy, Walnut Creek, CA) to SH and MB. MB was supported by an NSERC post-doctoral fellowship and a CIFAR Global Scholars fellowship. MC was supported by a Campus Alberta Innovates Program (CAIP) chair to MB.
    Keywords: Marine microbiology ; Metagenomics ; Metatranscriptomics ; Metabolites ; Atlantic Ocean ; Biogeochemistry ; Metabolic pathways ; Functional redundancy
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  • 60
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Caramanna, G., Sievert, S. M., & Buehring, S. I. Submarine shallow-water fluid emissions and their geomicrobiological imprint: a global overview. Frontiers in Marine Science, 8, (2021): 727199, https://doi.org/10.3389/fmars.2021.727199.
    Description: Submarine fluids emissions in the form of geothermal vents are widespread in a variety of geological settings ranging from volcanic to tectonically active areas. This overview aims to describe representative examples of submarine vents in shallow-water areas around the globe. The areas described include: Iceland, Azores, Mediterranean Sea (Italy and Greece), Caribbean, Baja California, Japan, Papua, New Zealand, Taiwan. Common and divergent characteristics in terms of origin and geochemistry of the emitted fluids and their impact on the indigenous organisms and the surrounding environment have been identified. In the hottest vents seawater concentration is common as well as some water vapor phase separation. Carbon dioxide is the most common gas often associated with compounds of sulfur and methane. In several vents precipitation of minerals can be identified in the surrounding sediments. The analyses of the microbial communities often revealed putative chemoautotrophs, with Campylobacteria abundantly present at many vents where reduced sulfur compounds are available. The techniques that can be used for the detection and quantification of underwater vents are also described, including geophysical and geochemical tools. Finally, the main geobiological effects due to the presence of the hydrothermal activity and the induced changes in water chemistry are assessed.
    Description: SMS was supported by the United States National Science Foundation (OCE-1124272) and the WHOI Investment in Science Fund and SIB by the Deutsche Forschungsgemeinschaft (Emmy Noether grant BU 2606/1).
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  • 61
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schaafsma, F. L., David, C. L., Kohlbach, D., Ehrlich, J., Castellani, G., Lange, B. A., Vortkamp, M., Meijboom, A., Fortuna-Wunsch, A., Immerz, A., Cantzler, H., Klasmeier, A., Zakharova, N., Schmidt, K., Van de Putte, A. P., van Franeker, J. A., & Flores, H. Allometric relationships of ecologically important Antarctic and Arctic zooplankton and fish species. Polar Biology 45, (2022): 203–224, https://doi.org/10.1007/s00300-021-02984-4.
    Description: Allometric relationships between body properties of animals are useful for a wide variety of purposes, such as estimation of biomass, growth, population structure, bioenergetic modelling and carbon flux studies. This study summarizes allometric relationships of zooplankton and nekton species that play major roles in polar marine food webs. Measurements were performed on 639 individuals of 15 species sampled during three expeditions in the Southern Ocean (winter and summer) and 2374 individuals of 14 species sampled during three expeditions in the Arctic Ocean (spring and summer). The information provided by this study fills current knowledge gaps on relationships between length and wet/dry mass of understudied animals, such as various gelatinous zooplankton, and of animals from understudied seasons and maturity stages, for example, for the krill Thysanoessa macrura and larval Euphausia superba caught in winter. Comparisons show that there is intra-specific variation in length–mass relationships of several species depending on season, e.g. for the amphipod Themisto libellula. To investigate the potential use of generalized regression models, comparisons between sexes, maturity stages or age classes were performed and are discussed, such as for the several krill species and T. libellula. Regression model comparisons on age classes of the fish E. antarctica were inconclusive about their general use. Other allometric measurements performed on carapaces, eyes, heads, telsons, tails and otoliths provided models that proved to be useful for estimating length or mass in, e.g. diet studies. In some cases, the suitability of these models may depend on species or developmental stages.
    Description: The Netherlands Ministry of Agriculture, Nature and Food Quality (LNV) funded this research under its Statutory Research Task Nature & Environment WOT-04-009-047.04. This research was further supported by the Netherlands Polar Programme (NPP), managed by the Dutch Research Council (NWO) under project nr. ALW 866.13.009 (ICEFLUX-NL). The study is associated with the Helmholtz Association Young Investigators Group ICEFLUX: Ice-ecosystem carbon flux in polar oceans (VH-NG-800) and contributes to the Helmholtz (HGF) research Programme Changing Earth – Sustaining our Future, Research Field Earth & Environment, Topic 6.1 and 6.3. NZ was supported by the GEOMAR project CATS: The Changing Arctic Transpolar System (BMBF-FK2 CATS). Contributions by KS were funded by the UK’s Natural Environment Research Council MOSAiC-Thematic project SYM-PEL: “Quantifying the contribution of sympagic versus pelagic diatoms to Arctic food webs and biogeochemical fluxes: application of source-specific highly branched isoprenoid biomarkers” (NE/S002502/1). BAL was further supported by the Norwegian Polar Institute and funding to M. Granskog from the Research Council of Norway to projects CAATEX (280531) and HAVOC (280292). DK was further funded by the Research Council of Norway through the project The Nansen Legacy (RCN # 276730) at the Norwegian Polar Institute. GC was further funded by the project EcoLight (03V01465) as part of the joint NERC/BMBF programme Changing Arctic Ocean. AVdP received support from Belspo in the framework the EU Lifewatch ERIC (Grant agreement FR/36/AN3) and the FEDTwin. Expedition Grant Numbers: ARK XVII/3 (PS80), AWI-PS81_01 (WISKY), ANT-XXIX/9 (PS82), AWI-PS89_02 (SIPES), AWI_PS92_00 (TRANSSIZ) and AWI_PS106/1_2-00 (SIPCA).
    Keywords: Arctic Ocean ; Southern Ocean ; Length ; Mass ; Zooplankton ; Fish ; Regression models
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  • 62
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Robuck, A. R., Hudak, C. A., Agvent, L., Emery, G., Ryan, P. G., Perold, V., Powers, K. D., Pedersen, J., Thompson, M. A., Suca, J. J., Moore, M. J., Harms, C. A., Bugoni, L., Shield, G., Glass, T., Wiley, D. N., & Lohmann, R. Birds of a feather eat plastic together: high levels of plastic ingestion in Great Shearwater adults and juveniles across their annual migratory cycle. Frontiers in Marine Science, 8, (2022): 719721, https://doi.org/10.3389/fmars.2021.719721.
    Description: Limited work to date has examined plastic ingestion in highly migratory seabirds like Great Shearwaters (Ardenna gravis) across their entire migratory range. We examined 217 Great Shearwaters obtained from 2008–2019 at multiple locations spanning their yearly migration cycle across the Northwest and South Atlantic to assess accumulation of ingested plastic as well as trends over time and between locations. A total of 2328 plastic fragments were documented in the ventriculus portion of the gastrointestinal tract, with an average of 9 plastic fragments per bird. The mass, count, and frequency of plastic occurrence (FO) varied by location, with higher plastic burdens but lower FO in South Atlantic adults and chicks from the breeding colonies. No fragments of the same size or morphology were found in the primary forage fish prey, the Sand Lance (Ammodytes spp., n = 202) that supports Great Shearwaters in Massachusetts Bay, United States, suggesting the birds directly ingest the bulk of their plastic loads rather than accumulating via trophic transfer. Fourier-transform infrared spectroscopy indicated that low- and high-density polyethylene were the most common polymers ingested, within all years and locations. Individuals from the South Atlantic contained a higher proportion of larger plastic items and fragments compared to analogous life stages in the NW Atlantic, possibly due to increased use of remote, pelagic areas subject to reduced inputs of smaller, more diverse, and potentially less buoyant plastics found adjacent to coastal margins. Different signatures of polymer type, size, and category between similar life stages at different locations suggests rapid turnover of ingested plastics commensurate with migratory stage and location, though more empirical evidence is needed to ground-truth this hypothesis. This work is the first to comprehensively measure the accumulation of ingested plastics by Great Shearwaters over the last decade and across multiple locations spanning their yearly trans-equatorial migration cycle and underscores their utility as sentinels of plastic pollution in Atlantic ecosystems.
    Description: This project was supported by the NOAA Fisheries National Seabird Program and the Volgenau Foundation. AR acknowledges support from the National Oceanic and Atmospheric Administration Dr. Nancy Foster Scholarship Program (NOAA Award Number NA17NOS4290028), the Robert and Patricia Switzer Foundation, the STEEP Superfund Research Program (NIEHS Award Number P42ES027706), and the Oak Ridge Institute for Science and Education (ORISE) program. LB was funded by INCT-Mar COI and PQ Grant No. 311409/2018-0, both by the Brazilian National Research Council (CNPq). JS was funded by the National Science Foundation Graduate Research Fellowship program.
    Keywords: Ardenna gravis ; migration ; pollution ; shearwaters ; marine debris ; microplastic ; nurdles ; bycatch
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  • 63
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Yamhure, G. M., Reyns, N., & Pineda, J. High larval concentrations and onshore transport of barnacle cyprids associated with thermal stratification. Frontiers in Marine Science, 8, (2021): 748389, https://doi.org/10.3389/fmars.2021.748389.
    Description: To better understand the hydrodynamic and hydrographic conditions experienced by larvae in the nearshore (within 1 km of shore), and the role that larval behavior plays in mediating shoreward transport to adult benthic habitats, we examined the vertical distribution and concentration of barnacle cyprids in a shallow, nearshore region in southern California, United States. We collected high-resolution physical measurements of currents and temperature at 3 stations (8, 5, and 4 m depths), and high-frequency measurements of barnacle larvae at a 4 m deep station ∼300 m from shore. Larvae were sampled from distinct 1 m depth intervals between the surface and the bottom (0–1 m, 1–2 m, 2–3 m, 3 m-bottom), each hour for overnight periods that ranged between 13 to 24 h in five cruises during the summers of 2017 and 2018. Barnacle cyprids of Chthamalus fissus predominated in all samples. Thermal stratification decreased closer to shore, but when the nearshore-most station remained stratified (Δ°C m–1 ≥ 0.1), C. fissus cyprid concentrations were high to extremely abundant (exceeding 200 and 4,000 individuals m–3, respectively). There were significant positive correlations between thermal stratification and the log-transformed C. fissus concentration at cruise-to-cruise scales, and between stratification and vertical variability in the high-frequency cross-shore currents at 2-day scales. Additionally, estimated larval transport was relatively high and shoreward when nearshore thermal stratification was greatest. Significant, albeit small, diel differences in cyprid distributions were also observed, with the proportion of cyprids increasing near the surface at night, and concentrations greater during the day than at night. Collectively, these results suggest that thermal stratification increases larval supply to the nearshore, and may enhance onshore larval transport to augment chances of successful settlement and recruitment to the intertidal adult habitat.
    Description: This study was funded by the National Science Foundation under grants OCE-1357290, OCE-1357327, OCE-1630459, and OCE-1630474.
    Keywords: larval vertical distribution ; thermocline ; larval transport ; Chthamalus fissus ; diel cycles ; nearshore
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  • 64
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ferrick, A., Wright, V., Manga, M., & Sitar, N. Microstructural differences between naturally-deposited and laboratory beach sands. Granular Matter, 24(1), (2022): 9, https://doi.org/10.1007/s10035-021-01169-4.
    Description: The orientation of, and contacts between, grains of sand reflect the processes that deposit the sands. Grain orientation and contact geometry also influence mechanical properties. Quantifying and understanding sand microstructure thus provide an opportunity to understand depositional processes better and connect microstructure and macroscopic properties. Using x-ray computed microtomography, we compare the microstructure of naturally-deposited beach sands and laboratory sands created by air pluviation in which samples are formed by raining sand grains into a container. We find that naturally-deposited sands have a narrower distribution of coordination number (i.e., the number of grains in contact) and a broader distribution of grain orientations than pluviated sands. The naturally-deposited sand grains orient inclined to the horizontal, and the pluviated sand grains orient horizontally. We explain the microstructural differences between the two different depositional methods by flowing water at beaches that re-positions and reorients grains initially deposited in unstable grain configurations.
    Description: MM is supported by National Science Foundation (No. 1615203). NS is supported by National Science Foundation (No. CMMI-1853056).
    Keywords: Microstructure ; X-ray computed microtomography ; Coordination number ; Pluviation
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  • 65
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ketten, D. R., Simmons, J. A., Riquimaroux, H., & Simmons, A. M. Functional analyses of peripheral auditory system adaptations for echolocation in air vs. water. Frontiers in Ecology and Evolution, 09, (2021): 661216, https://doi.org/10.3389/fevo.2021.661216.
    Description: The similarity of acoustic tasks performed by odontocete (toothed whale) and microchiropteran (insectivorous bat) biosonar suggests they may have common ultrasonic signal reception and processing mechanisms. However, there are also significant media and prey dependent differences, notably speed of sound and wavelengths in air vs. water, that may be reflected in adaptations in their auditory systems and peak spectra of out-going signals for similarly sized prey. We examined the anatomy of the peripheral auditory system of two species of FM bat (big brown bat Eptesicus fuscus; Japanese house bat Pipistrellus abramus) and two toothed whales (harbor porpoise Phocoena phocoena; bottlenose dolphin Tursiops truncatus) using ultra high resolution (11–100 micron) isotropic voxel computed tomography (helical and microCT). Significant differences were found for oval and round window location, cochlear length, basilar membrane gradients, neural distributions, cochlear spiral morphometry and curvature, and basilar membrane suspension distributions. Length correlates with body mass, not hearing ranges. High and low frequency hearing range cut-offs correlate with basilar membrane thickness/width ratios and the cochlear radius of curvature. These features are predictive of high and low frequency hearing limits in all ears examined. The ears of the harbor porpoise, the highest frequency echolocator in the study, had significantly greater stiffness, higher basal basilar membrane ratios, and bilateral bony support for 60% of the basilar membrane length. The porpoise’s basilar membrane includes a “foveal” region with “stretched” frequency representation and relatively constant membrane thickness/width ratio values similar to those reported for some bat species. Both species of bats and the harbor porpoise displayed unusual stapedial input locations and low ratios of cochlear radii, specializations that may enhance higher ultrasonic frequency signal resolution and deter low frequency cochlear propagation.
    Description: MicroCT scanning, data analyses, and manuscript preparation were assisted by funding to DK from the Joint Industry Program (contract JIP22 III-16-08 – 55205300) and fellowships from the Hanse-Wissenschaftskolleg ICBM Fellowship and the Helmholtz International Fellow research programs. Big brown bat data collection and analysis were supported by an Office of Naval Research grant N00014-14-1-05880 to JS and an Office of Naval Research MURI grant N00014-17-1-2736 to JS and AS. Specimen collection, histology processing, and helical scanning related to the data reported in this study were supported through multiple grants and contracts since 2010 to DK from NIH, N45/LMRS-United States Navy Environmental Division (EnvDiv), Office of Naval Research, and ONR Global.
    Keywords: biosonar ; cochlea ; basilar membrane ; stapes ; inner ear ; echolocation ; bat ; dolphin
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  • 66
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bongarts Lebbe, T., Rey-Valette, H., Chaumillon, E., Camus, G., Almar, R., Cazenave, A., Claudet, J., Rocle, N., Meur-Ferec, C., Viard, F., Mercier, D., Dupuy, C., Menard, F., Rossel, B. A., Mullineaux, L., Sicre, M.-A., Zivian, A., Gaill, F., & Euzen, A. Designing coastal adaptation strategies to tackle sea level rise. Frontiers in Marine Science, 8, (2021): 740602, https://doi.org/10.3389/fmars.2021.740602.
    Description: Faced with sea level rise and the intensification of extreme events, human populations living on the coasts are developing responses to address local situations. A synthesis of the literature on responses to coastal adaptation allows us to highlight different adaptation strategies. Here, we analyze these strategies according to the complexity of their implementation, both institutionally and technically. First, we distinguish two opposing paradigms – fighting against rising sea levels or adapting to new climatic conditions; and second, we observe the level of integrated management of the strategies. This typology allows a distinction between four archetypes with the most commonly associated governance modalities for each. We then underline the need for hybrid approaches and adaptation trajectories over time to take into account local socio-cultural, geographical, and climatic conditions as well as to integrate stakeholders in the design and implementation of responses. We show that dynamic and participatory policies can foster collective learning processes and enable the evolution of social values and behaviors. Finally, adaptation policies rely on knowledge and participatory engagement, multi-scalar governance, policy monitoring, and territorial solidarity. These conditions are especially relevant for densely populated areas that will be confronted with sea level rise, thus for coastal cities in particular.
    Description: This work was conducted as part of the project SEA’TIES led by the Ocean & Climate Platform. SEA’TIES is funded by the Prince Albert II Foundation (No. 3112), Veolia Foundation (No. 20EB2004), and Fondation de France, Monaco. It was coordinated by the CNRS, in the framework of the RTPi (International Multidisciplinary Thematic Network) which drives the scientific component of the SEA’TIES project.
    Keywords: climate change ; sea level rise ; adaptation ; governance ; nature-based solutions ; multidisciplinary approach ; vulnerability ; coastal cities
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  • 67
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Aguado, M. T., Ponz-Segrelles, G., Glasby, C. J., Ribeiro, R. P., Nakamura, M., Oguchi, K., Omori, A., Kohtsuka, H., Fisher, C., Ise, Y., Jimi, N., & Miura, T. Ramisyllis kingghidorahi n. Sp., a new branching annelid from Japan. Organisms Diversity & Evolution. (2022), https://doi.org/10.1007/s13127-021-00538-4.
    Description: Among over 20,000 species of Annelida, only two branching species with a highly modified body-pattern are known until now: the Syllidae Syllis ramosa McIntosh, 1879, and Ramisyllis multicaudata Glasby et al. (Zoological Journal of the Linnean Society, 164, 481–497, 2012). Both have unusual ramified bodies with one head and multiple branches and live inside the canals of host sponges. Using an integrative approach (combining morphology, internal anatomy, ecology, phylogeny, genetic divergence, and the complete mitochondrial genome), we describe a new branching species from Japan, Ramisyllis kingghidorahi n. sp., inhabiting an undescribed species of Petrosia (Porifera: Demospongiae) from shallow waters. We compare the new species with its closest relative, R. multicaudata; emend the diagnosis of Ramisyllis; and discuss previous reports of S. ramosa. This study suggests a much higher diversity of branching syllids than currently known. Finally, we discuss possible explanations for the feeding behaviour in the new species in relation to its highly ciliated wall of the digestive tubes (especially at the distal branches and anus), and provide a hypothesis for the evolution of branching body patterns as the result of an adaptation to the host sponge labyrinthic canal system.
    Description: Open Access funding enabled and organized by Projekt DEAL. This study was financed by the Biodiversitätsmuseum (PI:MTA), Georg August University, Göttingen, and by Grant-in Aid for Scientific Research A (No. 18H04006) (PI:TM) from the Ministry of Education, Culture, Sports, Science and Technology of Japan. GP-S was supported by the “Contratos Predoctorales para la Formación de Doctores 2016” program of MINECO, Spain (code: BES-2016–076419), co-financed by the European Social Found. RPR was supported by the program “Contratos predoctorales para Formación de Personal Investigador, FPI-UAM,” Universidad Autónoma de Madrid.
    Keywords: Mitochondrial genome ; Phylogenetics ; Sponge ; Syllidae ; Symbiosis ; Morphology ; Anatomy ; Ecology
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  • 68
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kim, D., Ji, R., Park, H. J., Feng, Z., Jang, J., Lee, C. l, Kang, Y.-H., & Kang, C.-K. Impact of shifting subpolar front on phytoplankton dynamics in the western margin of East/Japan Sea. Frontiers in Marine Science, 8, (2021): 790703, https://doi.org/10.3389/fmars.2021.790703.
    Description: A subpolar front (SPF) generated between the East Korea Warm Current (EKWC) and the North Korea Cold Current (NKCC) in the western margin of the East/Japan Sea has shifted northward in recent decades. This study investigated the biomass and composition of the phytoplankton assemblage in relation to hydrological and biogeochemical features in the shallow shelf and slope off the Korean coast from January to June in 2016 and 2017, to determine the mechanistic effects of SPF on spring–summer phytoplankton bloom dynamics. Monthly average depth-integrated chlorophyll a (Chl a) levels and the contribution of phytoplankton classes revealed bimodal diatom blooms in early spring and summer in the frontal zone. Canonical correspondence analysis showed that the distribution of high Chl a was associated with cold, low-salinity NKCC water in March 2016. No Chl a peak was observed in March 2017 when the warm saline EKWC water mass invaded. These results suggest that the NKCC intrusion acts as a forcing mechanism leading to enhanced phytoplankton biomass in the frontal zone. In contrast, positive correlations of Chl a concentration with water density and nutrient concentrations suggest that summer blooms were fed by the subsurface chlorophyll maximum (SCM) driven by shoaling of the pycnocline and nitracline. Varying water-column stratification determined the thickness of the SCM layer, driving year-to-year variability in the magnitude of diatom blooms. These findings further suggest that seasonal/interannual variability in the timing of algal blooms affects regional trophodynamics and hence could be an important factor in explaining ecosystem changes in this region.
    Description: This research was supported by “Long-term change of structure and function in marine ecosystems of Korea” and “Walleye pollock stock management based on marine information and communication technology” funded by the Ministry of Oceans and Fisheries, South Korea.
    Keywords: phytoplankton ; diatom bloom ; photosynthetic pigments ; subpolar front ; Ulleung Basin ; East/Japan Sea ; trophodynamics ; ocean currents
    Repository Name: Woods Hole Open Access Server
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  • 69
    Publication Date: 2022-08-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ganju, N. K., Couvillion, B. R., Defne, Z., & Ackerman, K. Development and application of landsat-based wetland vegetation cover and unvegetated-vegetated marsh ratio (UVVR) for the conterminous United States. Estuaries and Coasts, (2022), https://doi.org/10.1007/s12237-022-01081-x.
    Description: Effective management and restoration of salt marshes and other vegetated intertidal habitats require objective and spatially integrated metrics of geomorphic status and vulnerability. The unvegetated-vegetated marsh ratio (UVVR), a recently developed metric, can be used to establish present-day vegetative cover, identify stability thresholds, and quantify vulnerability to open-water conversion over a range of spatial scales. We developed a Landsat-based approach to quantify the within-pixel vegetated fraction and UVVR for coastal wetlands of the conterminous United States, at 30-m resolution for 2014–2018. Here we present the methodology used to generate the UVVR from spectral indices, along with calibration, validation, and spatial autocorrelation assessments. We then demonstrate multiple applications of the data across varying spatial scales: first, we aggregate the UVVR across individual states and estuaries to quantify total vegetated wetland area for the nation. On the state level, Louisiana and Florida account for over 50% of the nation’s total, while on the estuarine level, the Chesapeake Bay Estuary and selected Louisiana coastal areas each account for over 6% of the nation’s total vegetated wetland area. Second, we present cases where this dataset can be used to track wetland change (e.g., expansion due to restoration and loss due to stressors). Lastly, we propose a classification methodology that delineates areas vulnerable to open-water expansion based on the 5-year mean and standard deviation of the UVVR. Calculating the UVVR for the period-of-record back to 1985, as well as regular updating, will fill a critical gap for tracking national status of salt marshes and other vegetated habitats through time and space.
    Description: This work was supported by the U.S. Geological Survey’s Coastal and Marine Hazards/Resources Program.
    Keywords: Remote-sensing ; Salt marshes ; Tidal wetlands ; Vulnerability ; Geomorphology
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  • 70
    Publication Date: 2022-08-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bucklin, A., Batta-Lona, P., Questel, J., Wiebe, P., Richardson, D., Copley, N., & O’Brien, T. COI metabarcoding of zooplankton species diversity for time-series monitoring of the NW Atlantic continental shelf. Frontiers in Marine Science, 9, (2022): 867893, https://doi.org/10.3389/fmars.2022.867893.
    Description: Marine zooplankton are rapid-responders and useful indicators of environmental variability and climate change impacts on pelagic ecosystems on time scales ranging from seasons to years to decades. The systematic complexity and taxonomic diversity of the zooplankton assemblage has presented significant challenges for routine morphological (microscopic) identification of species in samples collected during ecosystem monitoring and fisheries management surveys. Metabarcoding using the mitochondrial Cytochrome Oxidase I (COI) gene region has shown promise for detecting and identifying species of some – but not all – taxonomic groups in samples of marine zooplankton. This study examined species diversity of zooplankton on the Northwest Atlantic Continental Shelf using 27 samples collected in 2002-2012 from the Gulf of Maine, Georges Bank, and Mid-Atlantic Bight during Ecosystem Monitoring (EcoMon) Surveys by the NOAA NMFS Northeast Fisheries Science Center. COI metabarcodes were identified using the MetaZooGene Barcode Atlas and Database (https://metazoogene.org/MZGdb) specific to the North Atlantic Ocean. A total of 181 species across 23 taxonomic groups were detected, including a number of sibling and cryptic species that were not discriminated by morphological taxonomic analysis of EcoMon samples. In all, 67 species of 15 taxonomic groups had ≥ 50 COI sequences; 23 species had 〉1,000 COI sequences. Comparative analysis of molecular and morphological data showed significant correlations between COI sequence numbers and microscopic counts for 5 of 6 taxonomic groups and for 5 of 7 species with 〉1,000 COI sequences for which both types of data were available. Multivariate statistical analysis showed clustering of samples within each region based on both COI sequence numbers and EcoMon counts, although differences among the three regions were not statistically significant. The results demonstrate the power and potential of COI metabarcoding for identification of species of metazoan zooplankton in the context of ecosystem monitoring.
    Description: This publication resulted in part from support provided by the Scientific Committee on Oceanic Research (SCOR). Funds were also contributed by the U.S. National Science Foundation (Grant OCE-1840868) and by national SCOR committees.
    Keywords: zooplankton ; metabarcoding ; cytochrome oxidase I ; species diversity ; ecosystem monitoring ; Northwest Atlantic continental shelf
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  • 71
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    PANGAEA
    In:  EPIC3INTERACT Webinar on Data Repositories, Online, 2022-05-12Bremerhaven, PANGAEA
    Publication Date: 2022-10-04
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 72
    Publication Date: 2022-10-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sandin, S. A., Alcantar, E., Clark, R., de Leon, R., Dilrosun, F., Edwards, C. B., Estep, A. J., Eynaud, Y., French, B. J., Fox, M. D., Grenda, D., Hamilton, S. L., Kramp, H., Marhaver, K. L., Miller, S. D., Roach, T. N. F., Seferina, G., Silveira, C. B., Smith, J. E., Zgliczynski, B. J., & Vermeij, M. J. A. Benthic assemblages are more predictable than fish assemblages at an island scale. Coral Reefs, 41, (2022.): 1031–1043, https://doi.org/10.1007/s00338-022-02272-5.
    Description: Decades of research have revealed relationships between the abundance of coral reef taxa and local conditions, especially at small scales. However, a rigorous test of covariation requires a robust dataset collected across wide environmental or experimental gradients. Here, we surveyed spatial variability in the densities of major coral reef functional groups at 122 sites along a 70 km expanse of the leeward, forereef habitat of Curaçao in the southern Caribbean. These data were used to test the degree to which spatial variability in community composition could be predicted based on assumed functional relationships and site-specific anthropogenic, physical, and ecological conditions. In general, models revealed less power to describe the spatial variability of fish biomass than cover of reef builders (R2 of best-fit models: 0.25 [fish] and 0.64 [reef builders]). The variability in total benthic cover of reef builders was best described by physical (wave exposure and reef relief) and ecological (turf algal height and coral recruit density) predictors. No metric of anthropogenic pressure was related to spatial variation in reef builder cover. In contrast, total fish biomass showed a consistent (albeit weak) association with anthropogenic predictors (fishing and diving pressure). As is typical of most environmental gradients, the spatial patterns of both fish biomass density and reef builder cover were spatially autocorrelated. Residuals from the best-fit model for fish biomass retained a signature of spatial autocorrelation while the best-fit model for reef builder cover removed spatial autocorrelation, thus reinforcing our finding that environmental predictors were better able to describe the spatial variability of reef builders than that of fish biomass. As we seek to understand spatial variability of coral reef communities at the scale of most management units (i.e., at kilometer- to island-scales), distinct and scale-dependent perspectives will be needed when considering different functional groups.
    Description: This research and the larger efforts of Blue Halo Curacao were supported by funding from the Waitt Institute and with permissions from the Government of Curacao, Ministry of Health, Environment, and Nature. Field logistics were further supported by the Waitt Institute vessel crew, CARMABI Foundation, The Dive Shop Curacao, and Dive Charter Curacao.
    Keywords: Community ecology ; Oceanography ; Anthropogenic impacts ; Spatial variation ; Spatial autocorrelation
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  • 73
    Publication Date: 2022-08-16
    Description: Geoheritage and geodiversity visually and symbolically express the link between the physical and biological environment and cultural world. In the geoethical vision, their protection is fundamental, since they are irreplaceable components of a non-renewable social and natural ‘capital’. They become points of reference to redefine the intimate connection between human beings and Earth, thus assuming a value meaning to be placed at the basis of a new way of experiencing the territory. Initiatives such as geoparks or geotourism represent their concrete implementation, as activities capable of enhancing the environment and its geological landscape. Furthermore, their learning and enjoyment also foster a broader understanding of the significance of geosciences and their importance for the functioning of societies, as well as promoting interactions with local human communities, and the expansion of one’s spiritual and aesthetical dimension while living the interaction with nature. Responsible geotourism enhances sites and landscapes of geological significance, assuring their protection and the sustainable development of surrounding areas. Moreover, the use of those sites by citizens can increase their awareness and understanding of key issues to be faced by society, such as the sustainable use of geo-resources, the mitigation of and adaptation to climate change effects, and the reduction of risks related to natural and anthropogenic phenomena. Geotourism, therefore, also represents the common ground on which geosciences and social sciences can interact, offering undoubted advantages. It makes multidisciplinary and interdisciplinary work and cross-boundaries national and international collaboration visual and tangible; it produces an increase in public awareness and scientific knowledge; it improves the quality of life of the local population by creating incentives for economic development; finally, it drives society to behave and act more responsibly towards geodiversity and biodiversity. This chapter frames geotourism within geoethical thought, emphasising its formative contribution for the human being.
    Description: Submitted
    Description: 1TM. Formazione
    Description: 2TM. Divulgazione Scientifica
    Description: 3TM. Comunicazione
    Keywords: geoethics ; geotourism ; geoparks ; responsibility ; sustainability ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 74
    Publication Date: 2022-08-23
    Description: This paper presents a comprehensive geological and geotechnical study of the whole area affected by liquefaction following the 2012 Emilia earthquakes, including all the available information from the field reconnaissance surveys, in situ tests, and laboratory analyses. The compilation was performed at 120 liquefied sites to verify and validate the reliability of liquefaction charts in alluvial sediments, and to assess liquefaction induced by the 2012 seismic sequence in the Emilia plain. The results reveal a wide range of grain sizes (from clean sands to sandy silts) and compositional characteristics (quartz-rich to litharenitic) in the 2012 ejecta, and show a strong relationship between the liquefaction and stratigraphic architecture of the subsurface. The availability of in situ tests at the liquefied sites makes it possible to verify and validate the reliability of the liquefaction charts in alluvial sediments with respect to the real observations. For the analyzed Emilia case studies, the use of non-liquefiable crust provides better estimations of the liquefaction manifestations when coupled with the thickness of the liquefiable layer rather than with the liquefaction potential index. Altogether, this work makes available to the international scientific community a consistent liquefaction database for in-depth earthquake studies
    Description: Published
    Description: 3659–3697
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 75
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    Springer
    In:  EPIC3Berlin, Springer, 120 p., ISBN: 978-3-662-64812-4
    Publication Date: 2022-08-29
    Description: Erklärt, wie eine Pandemie modelliert wird. Erläutert, welche Probleme sich mit Modellen lösen lassen und wo die Grenzen liegen. Bietet Orientierung in der Unübersichtlichkeit der Corona-Situation. Die COVID-19-Pandemie hat weltweit dramatische Folgen. Mathematische Modelle spielen bei ihrer Bewertung eine zentrale Rolle: Sie sollen die Wirkung von Maßnahmen abschätzen, die oft mit Einschränkungen individueller Freiheiten einhergehen. Umso mehr sollte das Wissen um die Mathematik der Pandemie nicht nur Experten überlassen bleiben. Dieses Buch erläutert grundlegende Begriffe und Modelle, und klärt weitverbreitete Missverständnisse auf. Das Buch gibt insbesondere Antwort auf folgende Fragen: Was sagen Kennzahlen wie Inzidenz, Reproduktionszahl, Hospitalisierungsrate oder Impfquote über die Pandemie? Was ist der Unterschied von linearem und exponentiellem Wachstum? Was ist Herdenimmunität? Warum werden sich trotz Herdenimmunität fast alle Ungeimpften anstecken? Was ist der Effekt von Kontaktbeschränkungen und Impfung? Warum sind Vorhersagen in der Pandemie schwierig?
    Repository Name: EPIC Alfred Wegener Institut
    Type: Book , NonPeerReviewed
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  • 76
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    In:  EPIC3Risiken, Krisen, Konflikte, Springer VS, Wiesbaden, Springer, 18 p., pp. 237-255, ISBN: 978-3-658-36194-5
    Publication Date: 2022-08-29
    Description: Renate Treffeisen und Klaus Grosfeld zeigen in ihren Beitrag, vor welchen Herausforderungen es beim Thema „Kimawandel“ aus dem Blickwinkel der Wissenschaftskommunikation geht. Sie appellieren zunächst dafür, statt von „Klimawandel" von „Klimakrise“ zu sprechen, damit der Blick auf Ursache, Dringlichkeit und den politischen Charakter des Problems in den Vordergrund tritt. Die Fridays4Future- und Scientists4Future-Bewegungen stünden dabei für ein Bottom-Up-Agenda-Setting, das Akteure zu Interaktion und Dialogbereitschaft auffordere. Treffeisen und Grosfeld erläutern daraufhin zwei Medienprojekte für erfolgreichen Wissenstransfer aus dem Forschungsverbund REKLIM.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , NonPeerReviewed
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  • 77
    Publication Date: 2022-06-22
    Description: This paper reviews current knowledge about the Earth’s core and the overlying deep mantle in terms of structure, chemical and mineralogical compositions, physical properties, and dynamics, using information from seismology, geophysics, and geochemistry. Highpressure experimental techniques that can help to interpret and understand observations of these properties and compositions in the deep interior are summarized. The paper also examines the consequences of core flows on global observations such as variations in Earth’s rotation and orientation or variations in the Earth’s magnetic field. Processes currently active at the core-mantle boundary and the various coupling mechanisms between the core and the mantle are discussed, together with some evidence from magnetic field observations.
    Description: Published
    Description: 263–302
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 78
    Publication Date: 2022-07-11
    Description: An evaluation of the feasible development of geothermal energy in Mozambique is proposed based on some thermal springs geochemical characterization in the Tete region. Chemical and isotopic data suggest that the springs have a meteoric origin and do not show connection with any active magmatic system. The proposed circulation model suggests high depths infiltration of meteoric waters along faults and fractures in a system characterised by discrete permeability and reservoir temperature between 90 and 120 °C. These results, jointly with low salinity fluids and corrosive components absence suggest that the geothermal system may be conveniently exploited for direct and indirect uses.
    Description: Published
    Description: 2
    Description: 1TR. Georisorse
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 79
    Publication Date: 2022-07-13
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Edgcomb, V., Teske, A., & Mara, P. Microbial hydrocarbon degradation in Guaymas Basin—exploring the roles and potential interactions of fungi and sulfate-reducing bacteria. Frontiers in Microbiology, 13, (2022): 831828, https://doi.org/10.3389/fmicb.2022.831828.
    Description: Hydrocarbons are degraded by specialized types of bacteria, archaea, and fungi. Their occurrence in marine hydrocarbon seeps and sediments prompted a study of their role and their potential interactions, using the hydrocarbon-rich hydrothermal sediments of Guaymas Basin in the Gulf of California as a model system. This sedimented vent site is characterized by localized hydrothermal circulation that introduces seawater sulfate into methane- and hydrocarbon-rich sediments, and thus selects for diverse hydrocarbon-degrading communities of which methane, alkane- and aromatics-oxidizing sulfate-reducing bacteria and archaea have been especially well-studied. Current molecular and cultivation surveys are detecting diverse fungi in Guaymas Basin hydrothermal sediments, and draw attention to possible fungal-bacterial interactions. In this Hypothesis and Theory article, we report on background, recent results and outcomes, and underlying hypotheses that guide current experiments on this topic in the Edgcomb and Teske labs in 2021, and that we will revisit during our ongoing investigations of bacterial, archaeal, and fungal communities in the deep sedimentary subsurface of Guaymas Basin.
    Description: This project was supported by collaborative NSF Biological Oceanography grants OCE-1829903 and OCE-1829680 “Hydrothermal fungi in the Guaymas Basin Hydrocarbon Ecosystem” to VE and AT, and collaborative NSF Biological Oceanography grants OCE-2046799 and OCE-2048489 “IODP-enabled Insights into Fungi and Their Metabolic Interactions with Other Microorganisms in Deep Subsurface Hydrothermal Sediments” to VE and AT. PM was supported by OCE-2046799 and OCE-1829903. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grant 1357238 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to AT.
    Keywords: hydrocarbon ; fungi ; sulfate-reducing bacteria ; microbial interaction ; Guaymas Basin
    Repository Name: Woods Hole Open Access Server
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  • 80
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    Springer
    In:  EPIC3World Atlas of Submarine Gas Hydrates in Continental Margins, World Atlas of Submarine Gas Hydrates in Continental Margins, Springer, 514 p., pp. 263-273
    Publication Date: 2022-09-04
    Description: The glaciated Greenland continental margins contain favorable conditions for hydrate formation if gas is present. No gas hydrates have been encountered in the drilling of offshore wells, however, and only a limited focus has been placed on academic-led hydrate research to date. Nevertheless, analyses of 2D and 3D seismic reflection data have revealed the occurrence of BSRs, DHIs, chimneys and pockmarks. These seismic features all suggest the presence of gas and gas hydrates within three different sections of the Greenland margin. Seismic amplitude observations in Melville Bay, offshore northwest Greenland, indicate the existence of a *220 m thick gas hydrate deposit over a 50 m high gas column. It is suggested that the paleo-topography of the area has forced the migration of fluid into the overlying stratigraphy. In the Disco area, offshore central West Greenland, seismic observations together with heatflow measurements and sediment core samples suggest that gas and gas hydrates exist in regions with sub-cropping Cretaceous to Paleocene strata and in areas covered by thick postglacial sediments. Finally, 2D seismic reflection data indicate gas and gas hydrate deposits of potentially abiotic origin within the northeast Greenland margin and Molloy Basin, adjacent to the ocean spreading systems in the Fram Strait.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , NonPeerReviewed
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  • 81
    Publication Date: 2022-09-22
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Grattepanche, J.-D., Jeffrey, W., Gast, R., & Sanders, R. Diversity of microbial eukaryotes along the West Antarctic Peninsula in austral spring. Frontiers in Microbiology, 13, (2022): 844856, https://doi.org/10.3389/fmicb.2022.844856.
    Description: During a cruise from October to November 2019, along the West Antarctic Peninsula, between 64.32 and 68.37°S, we assessed the diversity and composition of the active microbial eukaryotic community within three size fractions: micro- (〉 20 μm), nano- (20–5 μm), and pico-size fractions (5–0.2 μm). The communities and the environmental parameters displayed latitudinal gradients, and we observed a strong similarity in the microbial eukaryotic communities as well as the environmental parameters between the sub-surface and the deep chlorophyll maximum (DCM) depths. Chlorophyll concentrations were low, and the mixed layer was shallow for most of the 17 stations sampled. The richness of the microplankton was higher in Marguerite Bay (our southernmost stations), compared to more northern stations, while the diversity for the nano- and pico-plankton was relatively stable across latitude. The microplankton communities were dominated by autotrophs, mostly diatoms, while mixotrophs (phototrophs-consuming bacteria and kleptoplastidic ciliates, mostly alveolates, and cryptophytes) were the most abundant and active members of the nano- and picoplankton communities. While phototrophy was the dominant trophic mode, heterotrophy (mixotrophy, phagotrophy, and parasitism) tended to increase southward. The samples from Marguerite Bay showed a distinct community with a high diversity of nanoplankton predators, including spirotrich ciliates, and dinoflagellates, while cryptophytes were observed elsewhere. Some lineages were significantly related—either positively or negatively—to ice coverage (e.g., positive for Pelagophyceae, negative for Spirotrichea) and temperature (e.g., positive for Cryptophyceae, negative for Spirotrichea). This suggests that climate changes will have a strong impact on the microbial eukaryotic community.
    Description: This work was supported by the National Science Foundation (Grant Nos. ANT 1744767 to RS, ANT 1744663 to RG, and ANT 1744638 to WJ). This research was based, in part, upon sequencing conducted using the Rhode Island Genomics and Sequencing Center, which was supported in part by the National Science Foundation (MRI Grant No. DBI-0215393 and EPSCoR Grant Nos. 0554548 and EPS-1004057), the US Department of Agriculture (Grant Nos. 2002-34438-12688 and 2003-34438-13111), and the University of Rhode Island. This research includes calculations carried out on Temple University HPC resources supported in part by the National Science Foundation through major research instrumentation (Grant No. 1625061) and by the US Army Research Laboratory under (Contract No. W911NF-16-2-0189).
    Keywords: picoplankton ; nanoplankton ; microplankton ; Antarctic protists ; high-throughput sequencing ; RNA community
    Repository Name: Woods Hole Open Access Server
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  • 82
    Publication Date: 2022-06-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sigler, W. A., Ewing, S. A., Wankel, S. D., Jones, C. A., Leuthold, S., Brookshire, E. N. J., & Payn, R. A. Isotopic signals in an agricultural watershed suggest denitrification is locally intensive in riparian areas but extensive in upland soils. Biogeochemistry, 158, (2022): 251–268, https://doi.org/10.1007/s10533-022-00898-9.
    Description: Nitrogen loss from cultivated soils threatens the economic and environmental sustainability of agriculture. Nitrate (NO3−) derived from nitrification of nitrogen fertilizer and ammonified soil organic nitrogen may be lost from soils via denitrification, producing dinitrogen gas (N2) or the greenhouse gas nitrous oxide (N2O). Nitrate that accumulates in soils is also subject to leaching loss, which can degrade water quality and make NO3− available for downstream denitrification. Here we use patterns in the isotopic composition of NO3− observed from 2012 to 2017 to characterize N loss to denitrification within soils, groundwater, and stream riparian corridors of a non-irrigated agroecosystem in the northern Great Plains (Judith River Watershed, Montana, USA). We find evidence for denitrification across these domains, expressed as a positive linear relationship between δ15N and δ18O values of NO3−, as well as increasing δ15N values with decreasing NO3− concentration. In soils, isotopic evidence of denitrification was present during fallow periods (no crop growing), despite net accumulation of NO3− from the nitrification of ammonified soil organic nitrogen. We combine previous results for soil NO3− mass balance with δ15N mass balance to estimate denitrification rates in soil relative to groundwater and streams. Substantial denitrification from soils during fallow periods may be masked by nitrification of ammonified soil organic nitrogen, representing a hidden loss of soil organic nitrogen and an under-quantified flux of N to the atmosphere. Globally, cultivated land spends ca. 50% of time in a fallow condition; denitrification in fallow soils may be an overlooked but globally significant source of agricultural N2O emissions, which must be reduced along-side other emissions to meet Paris Agreement goals for slowing global temperature increase.
    Description: National Institute of Food and Agriculture, 2011–51130-31121, S. A. Ewing, 2011, S. A. Ewing, 2016–67026-25067, S. A. Ewing, Montana State University Extension, Montana Fertilizer Advisory Committee, Montana Agricultural Experiment Station, Montana State University Vice President of Research, Montana State University College of Agriculture, Montana Institute on Ecosystems, NSF EPSCoR, OIA-1757351, S. A. Ewing, OIA-1443108, S. A. Ewing, EPS-110134, S. A. Ewing.
    Keywords: Nitrogen ; Agriculture ; Soil ; Water ; Leaching ; Fallow
    Repository Name: Woods Hole Open Access Server
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  • 83
    Publication Date: 2022-06-09
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Parsons, M., Lin, T.-H., Mooney, T., Erbe, C., Juanes, F., Lammers, M., Li, S., Linke, S., Looby, A., Nedelec, S., Van Opzeeland, I., Radford, C., Rice, A., Sayigh, L., Stanley, J., Urban, E., & Di Iorio, L. Sounding the call for a global library of underwater biological sounds. Frontiers in Ecology and Evolution, 10, (2022): 810156, https://doi.org/10.3389/fevo.2022.810156.
    Description: Aquatic environments encompass the world’s most extensive habitats, rich with sounds produced by a diversity of animals. Passive acoustic monitoring (PAM) is an increasingly accessible remote sensing technology that uses hydrophones to listen to the underwater world and represents an unprecedented, non-invasive method to monitor underwater environments. This information can assist in the delineation of biologically important areas via detection of sound-producing species or characterization of ecosystem type and condition, inferred from the acoustic properties of the local soundscape. At a time when worldwide biodiversity is in significant decline and underwater soundscapes are being altered as a result of anthropogenic impacts, there is a need to document, quantify, and understand biotic sound sources–potentially before they disappear. A significant step toward these goals is the development of a web-based, open-access platform that provides: (1) a reference library of known and unknown biological sound sources (by integrating and expanding existing libraries around the world); (2) a data repository portal for annotated and unannotated audio recordings of single sources and of soundscapes; (3) a training platform for artificial intelligence algorithms for signal detection and classification; and (4) a citizen science-based application for public users. Although individually, these resources are often met on regional and taxa-specific scales, many are not sustained and, collectively, an enduring global database with an integrated platform has not been realized. We discuss the benefits such a program can provide, previous calls for global data-sharing and reference libraries, and the challenges that need to be overcome to bring together bio- and ecoacousticians, bioinformaticians, propagation experts, web engineers, and signal processing specialists (e.g., artificial intelligence) with the necessary support and funding to build a sustainable and scalable platform that could address the needs of all contributors and stakeholders into the future.
    Description: Support for the initial author group to meet, discuss, and build consensus on the issues within this manuscript was provided by the Scientific Committee on Oceanic Research, Monmouth University Urban Coast Institute, and Rockefeller Program for the Human Environment. The U.S. National Science Foundation supported the publication of this article through Grant OCE-1840868 to the Scientific Committee on Oceanic Research.
    Keywords: soundscape ; bioacoustics database ; artificial intelligence ; biodiversity ; passive acoustic monitoring ; ecological informatics
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  • 84
    Publication Date: 2022-07-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Light, C., Arbic, B., Martin, P., Brodeau, L., Farrar, J., Griffies, S., Kirtman, B., Laurindo, L., Menemenlis, D., Molod, A., Nelson, A., Nyadjro, E., O’Rourke, A., Shriver, J., Siqueira, L., Small, R., & Strobach, E. Effects of grid spacing on high-frequency precipitation variance in coupled high-resolution global ocean–atmosphere models. Climate Dynamics, (2022): 1–27, https://doi.org/10.1007/s00382-022-06257-6.
    Description: High-frequency precipitation variance is calculated in 12 different free-running (non-data-assimilative) coupled high resolution atmosphere–ocean model simulations, an assimilative coupled atmosphere–ocean weather forecast model, and an assimilative reanalysis. The results are compared with results from satellite estimates of precipitation and rain gauge observations. An analysis of irregular sub-daily fluctuations, which was applied by Covey et al. (Geophys Res Lett 45:12514–12522, 2018. https://doi.org/10.1029/2018GL078926) to satellite products and low-resolution climate models, is applied here to rain gauges and higher-resolution models. In contrast to lower-resolution climate simulations, which Covey et al. (2018) found to be lacking with respect to variance in irregular sub-daily fluctuations, the highest-resolution simulations examined here display an irregular sub-daily fluctuation variance that lies closer to that found in satellite products. Most of the simulations used here cannot be analyzed via the Covey et al. (2018) technique, because they do not output precipitation at sub-daily intervals. Thus the remainder of the paper focuses on frequency power spectral density of precipitation and on cumulative distribution functions over time scales (2–100 days) that are still relatively “high-frequency” in the context of climate modeling. Refined atmospheric or oceanic model grid spacing is generally found to increase high-frequency precipitation variance in simulations, approaching the values derived from observations. Mesoscale-eddy-rich ocean simulations significantly increase precipitation variance only when the atmosphere grid spacing is sufficiently fine (〈 0.5°). Despite the improvements noted above, all of the simulations examined here suffer from the “drizzle effect”, in which precipitation is not temporally intermittent to the extent found in observations.
    Description: Support for CXL’s effort on this project was provided by a Research Experiences for Undergraduates (REU) supplement for National Science Foundation (NSF) grant OCE-1851164 to BKA, which also provided partial support for PEM. In addition, BKA acknowledges NSF grant OCE-1351837, which provided partial support for AKO, Office of Naval Research grant N00014-19-1-2712 and NASA grants NNX17AH55G, which also provided partial support for ADN, and 80NSSC20K1135. JTF’s participation, and the SPURS-II buoy data, were funded by NASA grants 80NSSC18K1494 and NNX15AG20G.
    Keywords: Precipitation ; High-frequency precipitation ; Numerical modeling ; High-resolution models ; Coupled ocean-atmosphere models
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  • 85
    Publication Date: 2022-07-23
    Description: This open access book presents the results of three years collaboration between earth scientists and data scientists, in developing and applying data science methods for scientific discovery. The book will be highly beneficial for other researchers at senior and graduate level, interested in applying visual data exploration, computational approaches and scientifc workflows.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Book , NonPeerReviewed
    Format: application/pdf
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  • 86
    Publication Date: 2022-12-06
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Boss, E., Waite, A., Karstensen, J., Trull, T., Muller-Karger, F., Sosik, H., Uitz, J., Acinas, S., Fennel, K., Berman-Frank, I., Thomalla, S., Yamazaki, H., Batten, S., Gregori, G., Richardson, A., & Wanninkhof, R. Recommendations for plankton measurements on OceanSITES moorings with relevance to other observing sites. Frontiers in Marine Science, 9, (2022): 929436, https://doi.org/10.3389/fmars.2022.929436.
    Description: Measuring plankton and associated variables as part of ocean time-series stations has the potential to revolutionize our understanding of ocean biology and ecology and their ties to ocean biogeochemistry. It will open temporal scales (e.g., resolving diel cycles) not typically sampled as a function of depth. In this review we motivate the addition of biological measurements to time-series sites by detailing science questions they could help address, reviewing existing technology that could be deployed, and providing examples of time-series sites already deploying some of those technologies. We consider here the opportunities that exist through global coordination within the OceanSITES network for long-term (climate) time series station in the open ocean. Especially with respect to data management, global solutions are needed as these are critical to maximize the utility of such data. We conclude by providing recommendations for an implementation plan.
    Description: This work was partially supported from funding to SCOR WG 154 (P-OBS) provided by national committees of the Scientific Committee on Oceanic Research (SCOR) and from a grant to SCOR from the U.S. National Science Foundation (OCE-1840868). FM-K acknowledges the support provided for participation by the Marine Biodiversity Observation Network (MBON) sponsored by NASA, NOAA, ONR, BOEM. HS acknowledges support from the Simons Foundation.
    Keywords: Plankton ; Ocean ; Measurements ; Sensors ; OceanSITES ; Ocean biology
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  • 87
    Publication Date: 2022-11-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tuchen, F., Brandt, P., Hahn, J., Hummels, R., Krahmann, G., Bourlès, B., Provost, C., McPhaden, M., & Toole, J. Two decades of full-depth current velocity observations from a moored observatory in the central equatorial Atlantic at 0°N, 23°W. Frontiers in Marine Science, 9, (2022): 910979, https://doi.org/10.3389/fmars.2022.910979.
    Description: Regional climate variability in the tropical Atlantic, from interannual to decadal time scales, is inevitably connected to changes in the strength and position of the individual components of the tropical current system with impacts on societally relevant climate hazards such as anomalous rainfall or droughts over the surrounding continents (Bourlès et al., 2019; Foltz et al., 2019). Furthermore, the lateral supply of dissolved oxygen in the tropical Atlantic upper-ocean is closely linked to the zonal current bands (Brandt et al., 2008; Brandt et al., 2012; Burmeister et al., 2020) and especially to the Equatorial Undercurrent (EUC) and its long-term variations with potential implications for regional marine ecosystems (Brandt et al., 2021). The eastward flowing EUC is located between 70 to 200 m depth and forms one of the strongest tropical currents with maximum velocities of up to 1 m s-1 and maximum variability on seasonal time scales (Brandt et al., 2014; Johns et al., 2014). In the intermediate to deep equatorial Atlantic, variability on longer time scales is mainly governed by alternating, vertically-stacked, zonal currents (equatorial deep jets (EDJs); Johnson and Zhang, 2003). At a fixed location, the phases of these jets are propagating downward with time, implying that parts of their energy must propagate upward towards the surface (Brandt et al., 2011). In fact, a pronounced interannual cycle of about 4.5 years, that is associated with EDJs, is projected onto surface parameters such as sea surface temperature or precipitation (Brandt et al., 2011) further demonstrating the importance of understanding equatorial circulation variability and its role in tropical climate variability.
    Description: This study was funded by EU H2020 under grant agreement 817578 TRIATLAS project, by the Deutsche Forschungsgemeinschaft as part of the Sonderforschungsbereich754 “Climate–Biogeochemistry Interactions in the Tropical Ocean” and through several research cruises with RV Meteor, RV Maria S. Merian, RV L'Atalante, and RV Sonne and by the Deutsche Bundesministerium für Bildung und Forschung (BMBF) as part of the projects RACE (03F06518) and by the European Union 7th Framework Programme (FP7) under Grant Agreement 603521. Moored velocity observations were acquired in cooperation with the PIRATA project supported by NOAA (USA), IRD and Meteo-France (France), INPE (Brazil) and the Brazil Navy. This research was performed while FPT held an NRC Research Associateship Award at NOAA’s Atlantic Oceanographic and Meteorological Laboratory. FPT, PB, JH, RH, and GK are grateful for continuing support from GEOMAR Helmholtz Centre for Ocean Research Kiel. MM acknowledges the support of NOAA; PMEL contribution no. 5359. JT's contributions to this study were supported by the U.S. National Science Foundation.
    Keywords: Ocean observations ; Physical oceanography ; Equatorial Atlantic circulation ; Ocean currents ; Moored observations ; Climate variability
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  • 88
    Publication Date: 2022-11-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Voss, B., Eglinton, T., Peucker-Ehrenbrink, B., Galy, V., Lang, S., McIntyre, C., Spencer, R., Bulygina, E., Wang, Z., & Guay, K. Isotopic evidence for sources of dissolved carbon and the role of organic matter respiration in the Fraser River basin, Canada. Biogeochemistry. (2022), https://doi.org/10.1007/s10533-022-00945-5.
    Description: Sources of dissolved and particulate carbon to the Fraser River system vary significantly in space and time. Tributaries in the northern interior of the basin consistently deliver higher concentrations of dissolved organic carbon (DOC) to the main stem than other tributaries. Based on samples collected near the Fraser River mouth throughout 2013, the radiocarbon age of DOC exported from the Fraser River does not change significantly across seasons despite a spike in DOC concentration during the freshet, suggesting modulation of heterogeneous upstream chemical and isotopic signals during transit through the river basin. Dissolved inorganic carbon (DIC) concentrations are highest in the Rocky Mountain headwater region where carbonate weathering is evident, but also in tributaries with high DOC concentrations, suggesting that DOC respiration may be responsible for a significant portion of DIC in this basin. Using an isotope and major ion mass balance approach to constrain the contributions of carbonate and silicate weathering and DOC respiration, we estimate that up to 33 ± 11% of DIC is derived from DOC respiration in some parts of the Fraser River basin. Overall, these results indicate close coupling between the cycling of DOC and DIC, and that carbon is actively processed and transformed during transport through the river network.
    Description: Open Access funding provided by the MIT Libraries. This work was supported by the WHOI Academic Programs Office, the MIT EAPS Department Student Assistance Fund, and the PAOC Houghton Fund to BMV; NSF-ETBC grants OCE-0851015 to BPE, VG, and TIE and OCE-0851101 to RGMS; NSF grant EAR-1226818 to BPE; NSF grant OCE-0928582 to TIE and VG; and a WHOI Arctic Research Initiative grant to ZAW.
    Keywords: River ; Carbon isotopes ; Radiocarbon ; Weathering ; Carbon cycle
    Repository Name: Woods Hole Open Access Server
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  • 89
    Publication Date: 2022-11-04
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Yu, L., & Yang, K. A warm and a cold spot in Cape Cod waters amid the recent New England Shelf Warming. Frontiers in Marine Science, 9, (2022): 922046, https://doi.org/10.3389/fmars.2022.922046.
    Description: Despite the widely recognized warming of the New England Continental Shelf (NES), climate patterns of the shelf’s economically and ecologically important coastal environments remain less examined. Here we use a satellite sea-surface temperature (SST) analysis gridded on 0.05°C spatial resolution to show, for the first time, the existence of a warm and a cold spot in the environs of Cape Cod, Massachusetts amid the NES warming of the past 15 years. The warm spot refers to an increasing warming trend in shallow waters of Nantucket Sound sheltered by the islands of Martha’s Vineyard and Nantucket. The summer SST maxima have increased by 3.1±1.0°C (p〈0.1), about three times faster than the warming elsewhere on the NES, and the summer season has lengthened by 20 ± 7 days (p〈0.1). The cold spot refers to an increasing cooling trend over Nantucket Shoals, an area of shallow sandy shelf that extends south and southeast from Nantucket Island and also known for strong tidal mixing. The strong cooling trend during June–August reduced the SST maxima by -2.5±1.2°C (p〈0.1) and shortened the warm season by -32 ± 11 days (p〈0.1). Away from the Cape Cod waters, the broad warming on the shelf is attributable to a forward shifted annual cycle. The shift is most significant in August–November, during which the summer temperatures lingered longer into the fall, producing a pronounced warming and delaying the onset of the fall season by 13 ± 6 days (p〈0.1). The three different patterns of SST phenology trends displayed by the respective warm spot, the cold spot, and the broad shelf highlight the highly dynamically diverse responses of coastal waters under climate warming. Finally, the study showed that spatial resolution of SST datasets affects the characterization of the spatial heterogeneity in the nearshore SSTs. The widely used Optimum Interpolation SST (OISST) on 0.25°C resolution was examined. Although the two SST datasets agree well with the measurements from the moored buoys at four locations, OISST does not have the cold spot and shows a higher rate of warming on the shelf.
    Description: This study is supported by NOAA Global Ocean Monitoring and Observation (GOMO) Program, grand number NA19OAR4320074.
    Keywords: New England continental shelf warming ; Cape Cod ; Phenology change of sea surface temperature ; Fine-resolution satellite observations ; Coastal warm spot ; Coastal cold spot
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  • 90
    Publication Date: 2022-12-22
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Subhas, A., Marx, L., Reynolds, S., Flohr, A., Mawji, E., Brown, P., & Cael, B. Microbial ecosystem responses to alkalinity enhancement in the North Atlantic Subtropical Gyre. Frontiers in Climate, 4, (2022): 784997, https://doi.org/10.3389./fclim.2022.784997
    Description: In addition to reducing carbon dioxide (CO2) emissions, actively removing CO2 from the atmosphere is widely considered necessary to keep global warming well below 2°C. Ocean Alkalinity Enhancement (OAE) describes a suite of such CO2 removal processes that all involve enhancing the buffering capacity of seawater. In theory, OAE both stores carbon and offsets ocean acidification. In practice, the response of the marine biogeochemical system to OAE must be demonstrably negligible, or at least manageable, before it can be deployed at scale. We tested the OAE response of two natural seawater mixed layer microbial communities in the North Atlantic Subtropical Gyre, one at the Western gyre boundary, and one in the middle of the gyre. We conducted 4-day microcosm incubation experiments at sea, spiked with three increasing amounts of alkaline sodium salts and a 13C-bicarbonate tracer at constant pCO2. We then measured a suite of dissolved and particulate parameters to constrain the chemical and biological response to these additions. Microbial communities demonstrated occasionally measurable, but mostly negligible, responses to alkalinity enhancement. Neither site showed a significant increase in biologically produced CaCO3, even at extreme alkalinity loadings of +2,000 μmol kg−1. At the gyre boundary, alkalinity enhancement did not significantly impact net primary production rates. In contrast, net primary production in the central gyre decreased by ~30% in response to alkalinity enhancement. The central gyre incubations demonstrated a shift toward smaller particle size classes, suggesting that OAE may impact community composition and/or aggregation/disaggregation processes. In terms of chemical effects, we identify equilibration of seawater pCO2, inorganic CaCO3 precipitation, and immediate effects during mixing of alkaline solutions with seawater, as important considerations for developing experimental OAE methodologies, and for practical OAE deployment. These initial results underscore the importance of performing more studies of OAE in diverse marine environments, and the need to investigate the coupling between OAE, inorganic processes, and microbial community composition.
    Description: AS was supported through WHOI internal and Assistant Scientist Startup funding. LM and SR were supported by the University of Portsmouth Ph.D. scheme and the UK NERC National Capability programme CLASS (Climate Linked Atlantic Sector Science) ECR Fellowship. BC, AF, EM, and PB were supported by the UK NERC National Capability programme CLASS, grant number NE/R015953/1.
    Keywords: Climate—change ; Ocean alkalinity enhancement ; Biogeochemistry ; North Atlantic ; Carbon flux
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  • 91
    Publication Date: 2022-12-01
    Description: The processes occurring on the Earth are controlled by several gradients. The surface of the Planet is featured by complex geological patterns produced by both endogenous and exogenous phenomena. The lack of direct investigations still makes Earth interior poorly understood and prevents complete clarification of the mechanisms ruling geo- dynamics and tectonics. Nowadays, slab-pull is considered the force with the greatest impact on plate motions, but also ridge-push, trench suction and physico-chemical heterogeneities are thought to play an important role. However, several counterargu- ments suggest that these mechanisms are insufficient to explain plate tectonics. While large part of the scientific community agreed that either bottom-up or top-down driven mantle convection is the cause of lithospheric displacements, geodetic observations and geodynamic models also support an astronomical contribution to plate motions. Moreover, several evidences indicate that tectonic plates follow a mainstream and how the lithosphere has a roughly westerly drift with respect to the asthenospheric mantle. An even more wide-open debate rises for the occurrence of earthquakes, which should be framed within the different tectonic setting, which affects the spatial and temporal properties of seismicity. In extensional regions, the dominant source of energy is given by gravitational potential, whereas in strike-slip faults and thrusts, earthquakes mainly dissipate elastic potential energy indeed. In the present article, a review is given of the most significant results of the last years in the field of geodynamics and earthquake geology following the common thread of gradients, which ultimately shape our planet.
    Description: Published
    Description: 801–881
    Description: 1T. Struttura della Terra
    Description: JCR Journal
    Keywords: Earth’s gradients ; Forces driving plate motions ; Polarized plate tectonics ; Global scale geodynamics ; Earthquake geology ; The role of gradients in seismic dynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 92
    Publication Date: 2022-12-27
    Description: Santiaguito, Guatemala, represents one of the best cases of active lava dome complex in the world, producing lava flow effusion, weak explosive activity, and cycles of lava dome extrusion over varying timescales. Since the inception in 1922, it has shown a remarkable constant eruptive activity, characterized by effusion of blocky domes and lava flows punctuated by moderate explosions of gas-and-ash and pyroclastic flows. In this study, we reconstruct the time evolution of discharge rates of Santiaguito across one entire century, from 1922 to 2021, combining, for the more recent activity, new satellite thermal data. By using discrete Fourier transform (DFT) and Morlet wavelet analyses, we identify three fundamental periodicities in subsets of the 1922–2021 time-series: (i) long term (ca. 10 years), (ii) intermediate term (ca. 3.5 years), and (iii) short term (from ca. 1 year to ca. 3 months), which are comparable with those observed at other lava dome eruptions at calc-alkaline volcanoes. Such inferred periodicities provide a powerful tool for the interpretation of the non-linear eruptive behaviour and represent a pivotal benchmark for numerical modelling aimed to reconstruct the dynamics of the magma feeding system based on a time-averaged discharge rate dataset.
    Description: Published
    Description: 107
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 93
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Farfan, G. A., Apprill, A., Cohen, A., DeCarlo, T. M., Post, J. E., Waller, R. G., & Hansel, C. M. Crystallographic and chemical signatures in coral skeletal aragonite. Coral Reefs. (2121), https://doi.org/10.1007/s00338-021-02198-4.
    Description: Corals nucleate and grow aragonite crystals, organizing them into intricate skeletal structures that ultimately build the world’s coral reefs. Crystallography and chemistry have profound influence on the material properties of these skeletal building blocks, yet gaps remain in our knowledge about coral aragonite on the atomic scale. Across a broad diversity of shallow-water and deep-sea scleractinian corals from vastly different environments, coral aragonites are remarkably similar to one another, confirming that corals exert control on the carbonate chemistry of the calcifying space relative to the surrounding seawater. Nuances in coral aragonite structures relate most closely to trace element chemistry and aragonite saturation state, suggesting the primary controls on aragonite structure are ionic strength and trace element chemistry, with growth rate playing a secondary role. We also show how coral aragonites are crystallographically indistinguishable from synthetic abiogenic aragonite analogs precipitated from seawater under conditions mimicking coral calcifying fluid. In contrast, coral aragonites are distinct from geologically formed aragonites, a synthetic aragonite precipitated from a freshwater solution, and mollusk aragonites. Crystallographic signatures have future applications in understanding the material properties of coral aragonite and predicting the persistence of coral reefs in a rapidly changing ocean.
    Description: This project was funded by the Mineralogical Society of America Edward H. Kraus Crystallographic Research Fund and the WHOI Ocean Ventures Fund. G. Farfan was supported by a National Science Foundation Graduate Research Fellowship Grant No. 1122374 and a Ford Foundation Dissertation Fellowship. Sample collections from R. Waller were funded under NSF Grant Numbers 1245766, 1127582 and NOAA Ocean Exploration Deep Atlantic Stepping Stones. The authors thank Erik Cordes for the samples collected from the Gulf of Mexico, which were supported by NSF BIO-OCE Grant # 1220478. STZC collections from A. Apprill were funded by a Dalio Foundation (now ‘OceanX’) and a KAUST-WHOI Special Academic Partnership Funding Reserve with Christian Voolstra. Research and coral collections in Cuba were conducted under the LH112 AN (25) 2015 license granted by the Cuban Center for Inspection and Environmental Control with the assistance of Patricia Gonzalez and Michael Armenteros. Corals from Western Australia were collected under license number SF009558 obtained by M. McCulloch, and from the Maldives Ministry of Fisheries and Agriculture with collection permits (No. (OTHR)30-D/INDIV/2013/359). Matthew Neave assisted with the collections.
    Keywords: Aragonite ; Crystallography ; Geochemistry ; Biomineralization ; Environmental mineralogy ; Coral skeleton
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  • 94
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bernhard, A. E., Beltz, J., Giblin, A. E., & Roberts, B. J. Biogeography of ammonia oxidizers in New England and Gulf of Mexico salt marshes and the potential importance of comammox. ISME Communications, 1, (2021): 9, https://doi.org/10.1038./s43705-021-00008-0
    Description: Few studies have focused on broad scale biogeographic patterns of ammonia oxidizers in coastal systems, yet understanding the processes that govern them is paramount to understanding the mechanisms that drive biodiversity, and ultimately impact ecosystem processes. Here we present a meta-analysis of 16 years of data of ammonia oxidizer abundance, diversity, and activity in New England (NE) salt marshes and 5 years of data from marshes in the Gulf of Mexico (GoM). Potential nitrification rates were more than 80x higher in GoM compared to NE marshes. However, nitrifier abundances varied between regions, with ammonia-oxidizing archaea (AOA) and comammox bacteria significantly greater in GoM, while ammonia-oxidizing bacteria (AOB) were more than 20x higher in NE than GoM. Total bacterial 16S rRNA genes were also significantly greater in GoM marshes. Correlation analyses of rates and abundance suggest that AOA and comammox are more important in GoM marshes, whereas AOB are more important in NE marshes. Furthermore, ratios of nitrifiers to total bacteria in NE were as much as 80x higher than in the GoM, suggesting differences in the relative importance of nitrifiers between these systems. Communities of AOA and AOB were also significantly different between the two regions, based on amoA sequences and DNA fingerprints (terminal restriction fragment length polymorphism). Differences in rates and abundances may be due to differences in salinity, temperature, and N loading between the regions, and suggest significantly different N cycling dynamics in GoM and NE marshes that are likely driven by strong environmental differences between the regions.
    Description: This research was made possible by grants from The Gulf of Mexico Research Initiative to the Coastal Waters Consortium (CWC) to A.E.B., A.E.G., and B.J.R. Additional funding to A.E.B. came from the National Science Foundation awards MCB-0457183 and DEB-0814586. The funders had no role in the design, execution, or analyses of this project. Data are publicly available through the Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) at https://doi.org/10.7266/N7T43R0G (GoM gene abundance 2012), https://doi.org/10.7266/N7WH2MXZ (GoM AOA TRFLP 2012), N7RR1W6N (GoM AOB TRFLP 2012), https://doi.org/10.7266/N7X63JVT (GoM gene abundance 2013), https://doi.org/10.7266/N7SF2T4H (GoM AOB TRFLP 2013), https://doi.org/10.7266/N7NP22D5 (GoM AOA TRFLP 2013), https://doi.org/10.7266/N7D50JXK (GoM gene abundance 2014), https://doi.org/10.7266/N78C9T6Q (GoM AOB TRFLP 2014), https://doi.org/10.7266/N74M92HT (GoM AOA TRFLP 2014), https://doi.org/10.7266/N7319SXQ (GoM gene abundance 2015–2016), https://doi.org/10.7266/N7Z899FT (GoM AOB TRFLP 2015–2016), https://doi.org/10.7266/N7TH8JQ3 (GoM AOA TRFLP 2015–2016), https://doi.org/10.7266/N70Z715C (GoM 2012 nitrification rates and sediment characteristics), https://doi.org/10.7266/N7Z31WJF (GoM 2013–2014 nitrification rates and sediment characteristics), https://doi.org/10.7266/N7-0SVP-NN22 (GoM 2015–2016 nitrification rates and sediment characteristics), https://doi.org/10.7266/N7-MJPN-EQ50 (NE gene abundance, rates, and sediment chemistry), https://doi.org/10.7266/N7-QSRR-0A74 (NE AOB TRFLP), https://doi.org/10.7266/N7-4FSS-EK19 (NE AOA TRFLP). Sediment chemistry data from PIE marshes is available at https://pie-lter.ecosystems.mbl.edu/data.
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  • 95
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Clayton, S., Alexander, H., Graff, J. R., Poulton, N. J., Thompson, L. R., Benway, H., Boss, E., & Martiny, A. Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology. Frontiers in Marine Science, 8, (2022): 767443, https://doi.org/10.3389/fmars.2021.767443.
    Description: In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in time and space compared to physical and chemical properties. This lack of information hampers our ability to understand the role of plankton in regulating biogeochemical processes and fueling higher trophic levels, now and in future ocean conditions. Traditionally, many of the methods used to quantify biological and ecosystem essential ocean variables (EOVs), measures that provide valuable information on the ecosystem, have been expensive and labor- and time-intensive, limiting their large-scale deployment. In the last two decades, new technologies have been developed and matured, making it possible to greatly expand our biological ocean observing capacity. These technologies, including cell imaging, bio-optical sensors and 'omic tools, can be combined to provide overlapping measurements of key biological and ecosystem EOVs. New developments in data management and open sharing can facilitate meaningful synthesis and integration with concurrent physical and chemical data. Here we outline how Bio-GO-SHIP leverages these technological advances to greatly expand our knowledge and understanding of the constituents and function of the global ocean plankton ecosystem.
    Description: The Bio-GO-SHIP pilot program was funded under the National Oceanographic Partnership Program as an inter-agency partnership between NOAA and NASA, with the US Integrated Ocean Observing System and NOAA's Global Ocean Monitoring and Observing program (HA, SC, JG, AM, and NP). HA was supported by a WHOI Independent Research and Development award. AM was supported by funding from NSF OCE-1848576 and 1948842 and NASA 80NSSC21K1654. JG was funded by NASA from grants 80NSSC17K0568 and NNX15AAF30G. LT was supported by award NA06OAR4320264 06111039 to the Northern Gulf Institute by NOAA's Office of Oceanic and Atmospheric Research, U.S. Department of Commerce.
    Keywords: Biological oceanography ; Plankton ecosystems ; Ocean observing ; Repeat hydrography ; GO-SHIP program
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  • 96
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lamborg, C. H., Hansel, C. M., Bowman, K. L., Voelker, B. M., Marsico, R. M., Oldham, V. E., Swarr, G. J., Zhang, T., & Ganguli, P. M. Dark reduction drives evasion of mercury from the ocean. Frontiers in Environmental Chemistry, 2, (2021): 659085, https://doi.org/10.3389/fenvc.2021.659085.
    Description: Much of the surface water of the ocean is supersaturated in elemental mercury (Hg0) with respect to the atmosphere, leading to sea-to-air transfer or evasion. This flux is large, and nearly balances inputs from the atmosphere, rivers and hydrothermal vents. While the photochemical production of Hg0 from ionic and methylated mercury is reasonably well-studied and can produce Hg0 at fairly high rates, there is also abundant Hg0 in aphotic waters, indicating that other important formation pathways exist. Here, we present results of gross reduction rate measurements, depth profiles and diel cycling studies to argue that dark reduction of Hg2+ is also capable of sustaining Hg0 concentrations in the open ocean mixed layer. In locations where vertical mixing is deep enough relative to the vertical penetration of UV-B and photosynthetically active radiation (the principal forms of light involved in abiotic and biotic Hg photoreduction), dark reduction will contribute the majority of Hg0 produced in the surface ocean mixed layer. Our measurements and modeling suggest that these conditions are met nearly everywhere except at high latitudes during local summer. Furthermore, the residence time of Hg0 in the mixed layer with respect to evasion is longer than that of redox, a situation that allows dark reduction-oxidation to effectively set the steady-state ratio of Hg0 to Hg2+ in surface waters. The nature of these dark redox reactions in the ocean was not resolved by this study, but our experiments suggest a likely mechanism or mechanisms involving enzymes and/or important redox agents such as reactive oxygen species and manganese (III).
    Description: This work was supported by NSF Grant OCE-1355720 (to CH, CL, and BV).
    Keywords: Mercury ; Evasion ; Elemental ; Dark ; Ocean ; Reactive oxygen species ; Manganese ; Global model
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  • 97
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Barry, P. H., De Moor, J. M., Chiodi, A., Aguilera, F., Hudak, M. R., Bekaert, D. V., Turner, S. J., Curtice, J., Seltzer, A. M., Jessen, G. L., Osses, E., Blamey, J. M., Amenabar, M. J., Selci, M., Cascone, M., Bastianoni, A., Nakagawa, M., Filipovich, R., Bustos, E., Schrenk, M. O. , Buongiorno, J., Ramírez, C. J., Rogers, T. J., Lloyd, K. G. & Giovannelli, D. The helium and carbon isotope characteristics of the Andean Convergent Margin. Frontiers in Earth Science, 10, (2022): 897267, https://doi.org/10.3389/feart.2022.897267.
    Description: Subduction zones represent the interface between Earth’s interior (crust and mantle) and exterior (atmosphere and oceans), where carbon and other volatile elements are actively cycled between Earth reservoirs by plate tectonics. Helium is a sensitive tracer of volatile sources and can be used to deconvolute mantle and crustal sources in arcs; however it is not thought to be recycled into the mantle by subduction processes. In contrast, carbon is readily recycled, mostly in the form of carbon-rich sediments, and can thus be used to understand volatile delivery via subduction. Further, carbon is chemically-reactive and isotope fractionation can be used to determine the main processes controlling volatile movements within arc systems. Here, we report helium isotope and abundance data for 42 deeply-sourced fluid and gas samples from the Central Volcanic Zone (CVZ) and Southern Volcanic Zone (SVZ) of the Andean Convergent Margin (ACM). Data are used to assess the influence of subduction parameters (e.g., crustal thickness, subduction inputs, and convergence rate) on the composition of volatiles in surface volcanic fluid and gas emissions. He isotopes from the CVZ backarc range from 0.1 to 2.6 RA (n = 23), with the highest values in the Puna and the lowest in the Sub-Andean foreland fold-and-thrust belt. Atmosphere-corrected He isotopes from the SVZ range from 0.7 to 5.0 RA (n = 19). Taken together, these data reveal a clear southeastward increase in 3He/4He, with the highest values (in the SVZ) falling below the nominal range associated with pure upper mantle helium (8 ± 1 RA), approaching the mean He isotope value for arc gases of (5.4 ± 1.9 RA). Notably, the lowest values are found in the CVZ, suggesting more significant crustal inputs (i.e., assimilation of 4He) to the helium budget. The crustal thickness in the CVZ (up to 70 km) is significantly larger than in the SVZ, where it is just ∼40 km. We suggest that crustal thickness exerts a primary control on the extent of fluid-crust interaction, as helium and other volatiles rise through the upper plate in the ACM. We also report carbon isotopes from (n = 11) sites in the CVZ, where δ13C varies between −15.3‰ and −1.2‰ [vs. Vienna Pee Dee Belemnite (VPDB)] and CO2/3He values that vary by over two orders of magnitude (6.9 × 108–1.7 × 1011). In the SVZ, carbon isotope ratios are also reported from (n = 13) sites and vary between −17.2‰ and −4.1‰. CO2/3He values vary by over four orders of magnitude (4.7 × 107–1.7 × 1012). Low δ13C and CO2/3He values are consistent with CO2 removal (e.g., calcite precipitation and gas dissolution) in shallow hydrothermal systems. Carbon isotope fractionation modeling suggests that calcite precipitation occurs at temperatures coincident with the upper temperature limit for life (122°C), suggesting that biology may play a role in C-He systematics of arc-related volcanic fluid and gas emissions.
    Description: This work was principally supported by the NSF-FRES award 2121637 to PB, KL, and JM. Field work was also supported by award G-2016-7206 from the Alfred P. Sloan Foundation and the Deep Carbon Observatory to PB, KL, DG, and JM. Additional support came from The National Fund for Scientific and Technological Development of Chile (FONDECYT) Grant 11191138 (The National Research and Development Agency of Chile, ANID Chile), and COPAS COASTAL ANID FB210021 to GJ. DG was partially supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program Grant Agreement No. 948972—COEVOLVE—ERC-2020-STG.
    Keywords: Helium ; Carbon ; SVZ ; CVZ ; Andes (Argentina and Chile)
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  • 98
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rathore, S., Goyal, R., Jangir, B., Ummenhofer, C., Feng, M., & Mishra, M. Interactions between a marine heatwave and tropical cyclone Amphan in the Bay of Bengal in 2020. Frontiers in Climate, 4, (2022): 861477, https://doi.org/10.3389/fclim.2022.861477.
    Description: Interactions are diagnosed between a marine heatwave (MHW) event and tropical super cyclone Amphan in the Bay of Bengal. In May 2020, an MHW developed in the Bay of Bengal driven by coupled ocean-atmosphere processes which included shoaling of the mixed layer depth due to reduced wind speed, increased net surface shortwave radiation flux into the ocean, increased upper ocean stratification, and increased sub-surface warming. Ocean temperature, rather than salinity, dominated the stratification that contributed to the MHW development and the subsurface ocean warming that also increased tropical cyclone heat potential. The presence of this strong MHW with sea surface temperature anomalies 〉2.5°C in the western Bay of Bengal coincided with the cyclone track and facilitated the rapid intensification of tropical cyclone Amphan to a super cyclone in just 24 h. This rapid intensification of a short-lived tropical cyclone, with a lifespan of 5 days over the ocean, is unprecedented in the Bay of Bengal during the pre-monsoon period (March-May). As the cyclone approached landfall in northern India, the wind-induced mixing deepened the mixed layer, cooled the ocean's surface, and reduced sub-surface warming in the bay, resulting in the demise of the MHW. This study provides new perspectives on the interactions between MHWs and tropical cyclones that could aid in improving the current understanding of compound extreme events that have severe socio-economic consequences in affected countries.
    Description: CU acknowledges support from the James E. and Barbara V. Moltz Fellowship for Climate-Related Research and the Independent Research & Development Program at WHOI. MF was supported by the Centre for Southern Hemisphere Oceans Research (CSHOR), which is a joint initiative between the Qingdao National Laboratory for Marine Science and Technology (QNLM), CSIRO, University of New South Wales, and the University of Tasmania.
    Keywords: Compound extreme events ; Marine heatwave ; Tropical cyclone ; Amphan ; Fani ; Super cyclone ; Rapid intensification ; Extremely severe cyclone
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  • 99
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Großelindemann, H., Ryan, S., Ummenhofer, C., Martin, T., & Biastoch, A. Marine Heatwaves and their depth structures on the Northeast U.S. continental shelf. Frontiers in Climate, 4, (2022): 857937, https://doi.org/10.3389/fclim.2022.857937.
    Description: Marine Heatwaves (MHWs) are ocean extreme events, characterized by anomalously high temperatures, which can have significant ecological impacts. The Northeast U.S. continental shelf is of great economical importance as it is home to a highly productive ecosystem. Local warming rates exceed the global average and the region experienced multiple MHWs in the last decade with severe consequences for regional fisheries. Due to the lack of subsurface observations, the depth-extent of MHWs is not well-known, which hampers the assessment of impacts on pelagic and benthic ecosystems. This study utilizes a global ocean circulation model with a high-resolution (1/20°) nest in the Atlantic to investigate the depth structure of MHWs and associated drivers on the Northeast U.S. continental shelf. It is shown that MHWs exhibit varying spatial extents, with some only occurring at depth. The highest intensities are found around 100 m depth with temperatures exceeding the climatological mean by up to 7°C, while surface intensities are typically smaller (around 3°C). Distinct vertical structures are associated with different spatial MHW patterns and drivers. Investigation of the co-variability of temperature and salinity reveals that over 80% of MHWs at depth (〉50 m) coincide with extreme salinity anomalies. Two case studies provide insight into opposing MHW patterns at the surface and at depth, being forced by anomalous air-sea heat fluxes and Gulf Stream warm core ring interaction, respectively. The results highlight the importance of local ocean dynamics and the need to realistically represent them in climate models.
    Description: This work was supported by a DAAD RISE Worldwide fellowship (to HG), a Feodor-Lynen Fellowship by the Alexander von Humboldt Foundation and the WHOI Postdoctoral Scholar program (to SR), and the James E. and Barbara V. Moltz Fellowship for Climate-Related Research (to CU). Franziska Schwarzkopf performed the integration of the OGCM simulations, which was performed on the Earth System Modeling Project (ESM) partition of the supercomputer JUWELS at the Jülich Supercomputing Centre (JSC).
    Keywords: Marine heatwaves ; Northeast U.S. continental shelf ; Ecosystem impacts ; Subsurface marine heatwaves ; Gulf Stream warm core rings
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  • 100
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Smith, A. R., Mueller, R., Fisk, M. R., & Colwell, F. S. Ancient metabolisms of a thermophilic subseafloor bacterium. Frontiers in Microbiology, 12, (2021): 764631, https://doi.org/10.3389/fmicb.2021.764631.
    Description: The ancient origins of metabolism may be rooted deep in oceanic crust, and these early metabolisms may have persisted in the habitable thermal anoxic aquifer where conditions remain similar to those when they first appeared. The Wood–Ljungdahl pathway for acetogenesis is a key early biosynthetic pathway with the potential to influence ocean chemistry and productivity, but its contemporary role in oceanic crust is not well established. Here, we describe the genome of a novel acetogen from a thermal suboceanic aquifer olivine biofilm in the basaltic crust of the Juan de Fuca Ridge (JdFR) whose genome suggests it may utilize an ancient chemosynthetic lifestyle. This organism encodes the genes for the complete canonical Wood–Ljungdahl pathway, but is potentially unable to use sulfate and certain organic carbon sources such as lipids and carbohydrates to supplement its energy requirements, unlike other known acetogens. Instead, this organism may use peptides and amino acids for energy or as organic carbon sources. Additionally, genes involved in surface adhesion, the import of metallic cations found in Fe-bearing minerals, and use of molecular hydrogen, a product of serpentinization reactions between water and olivine, are prevalent within the genome. These adaptations are likely a reflection of local environmental micro-niches, where cells are adapted to life in biofilms using ancient chemosynthetic metabolisms dependent on H2 and iron minerals. Since this organism is phylogenetically distinct from a related acetogenic group of Clostridiales, we propose it as a new species, Candidatus Acetocimmeria pyornia.
    Description: Metagenome sequencing was made possible by the Deep Carbon Observatory Census of Deep Life supported by the Alfred P. Sloan Foundation and was performed at the Marine Biological Laboratory (Woods Hole, MA, United States). This work was funded by NASA grant NNX08AO22G and a graduate fellowship from the NSF Center for Dark Energy Biosphere Investigations. The flow cells were funded under J0972A from the U.S. Science Support Program of Joint Oceanographic Institutions.
    Keywords: Metabolism ; Carbon fixation ; Acetogenesis ; Bacteria ; Seafloor ; Hydrogen ; Amino acid ; Clostridia
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