ALBERT

Description: This article has been accepted for publication in Geophysical Journal International ©:The Author(s) 2020. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved.Uploaded in accordance with the publisher's self-archiving policy. All rights reserved

Description: The application of a physics-based earthquake simulator to Central Italy allowed the compilation of a synthetic seismic catalogue spanning 100 000 yr, containing more than 300 000 M ≥ 4.0 simulated earthquakes, without the limitations that real catalogues suffer in terms of completeness, homogeneity and time duration. The seismogenic model upon which we applied the simulator code was derived from version 3.2.1 of the Database of Individual Seismogenic Sources (DISS; http://diss.rm.ingv.it/diss/), selecting, and modifying where appropriate, all the fault systems that are recognized in the portion of Central Italy considered in this study, with a total of 54 faults. Besides tectonic stress loading and static stress transfer as in the previous versions, the physical model on which the latest version of our simulation algorithm is based also includes the Rate and State constitutive law that helps to reproduce Omori’s law. One further improvement in our code was also the introduction of trapezoidalshaped faults that perform better than known faults. The resulting synthetic seismic catalogue exhibits typical magnitude, space and time features which are comparable to those in real observations. These features include the total seismic moment rate, the earthquake magnitude distribution, and the short- and medium-term earthquake clustering. A typical aspect of the observed seismicity in Central Italy, aswell as across thewhole Italian landmass and elsewhere, is the occurrence of earthquake sequences characterized by multiple main shocks of similar magnitude. These sequences are different from the usual earthquake clusters and aftershock sequences, since they have at least two main shocks of similar magnitude. Therefore, special attentionwas devoted to verifyingwhether the simulated catalogue includes this notable aspect. For this purpose, we developed a computer code especially for this work to count the number of multiple events contained in a seismic catalogue under a quantitative definition. We found that the last version of the simulator code produces a slightly larger number of multiple events than the previous versions, but not as large as in the real catalogue. A possible reason for this drawback is the lack of components such as pore-pressure changes due to fluid-diffusion in the adopted physical model.

Description: Published

Description: 526–542

Description: 6T. Studi di pericolosità sismica e da maremoto

Description: JCR Journal

Description: The highly populated coasts of the Bay of Bengal are particularly vulnerable to water-borne diseases, pollution and climatic extremes. The environmental factors behind bacterial community composition and Vibrio distribution were investigated in an estuarine system of a cholera-endemic region in the coastline of Bangladesh. Higher temperatures and sewage pollution were important drivers of the abundance of toxigenic Vibrio cholerae. A closer relation between non-culturable Vibrio and particulate organic matter (POM) was inferred during the post-monsoon. The distribution of operational taxonomic units (OTUs) of Vibrio genus was likely driven by salinity and temperature. The resuspension of sediments increased Vibrio abundance and organic nutrient concentrations. The d13C dynamic in POM followed an increasing gradient from freshwater to marine stations; nevertheless, it was not a marker of sewage pollution. Bacteroidales and culturable coliforms were reliable indicators of untreated wastewater during pre and post-monsoon seasons. The presumptive incorporation of depletedammonium derived from ammonification processes under the hypoxic conditions, by some microorganisms such as Cloacibacterium and particularly by Arcobacter nearby the sewage discharge, contributed to the drastic 15N depletion in the POM. The likely capacity of extracellular polymeric substances production of these taxa may facilitate the colonization of POM from anthropogenic origin and may signify important properties for wastewater bioremediation. Genera of potential pathogens other than Vibrio associated with sewage pollution were Acinetobacter, Aeromonas, Arcobacter, and Bergeyella. The changing environmental conditions of the estuary favored the abundance of early colonizers and the island biogeography theory explained the distribution of some bacterial groups. This multidisciplinary study evidenced clearly the eutrophic conditions of the Karnaphuli estuary and assessed comprehensively its current bacterial baseline and potential risks. The prevailing conditions together with human overpopulation and frequent natural disasters, transform the region in one of the most vulnerable to climate change. Adaptive management strategies are urgently needed to enhance ecosystem health.

Description: Deep-towed geophysical surveys require precise knowledge of navigational parameters such as instrument position and orientation because navigational uncertainties reflect in the data and therefore in the inferred geophysical properties of the subseafloor. We address this issue for the case of electrical conductivity inferred from controlled source electromagnetic data. We show that the data error is laterally variable due to irregular motion during deep towing, but also due to lateral variations in conductivity, including those resulting from topography. To address this variability and quantify the data error prior to inversion, we propose a 2-D perturbation study. Our workflow enables stable and geologically reliable results for multicomponent and multifrequency inversions. An error estimation workflow is presented, which comprises the assessment of navigational uncertainties, perturbation of navigational parameters, and forward modelling of electric field amplitudes for a homogeneous and then a heterogeneous subseafloor conductivity model. Some navigational uncertainties are estimated from variations of direct measurements. Other navigational parameters required for inversion are derived from the measured quantities and their error is calculated by means of error propagation. Some navigational parameters show direct correlation with the measured electric fields. For example, the antenna dip correlates with the vertical electric field and the depth correlates with the horizontal electric field. For the perturbation study each standard deviation is added to the navigational parameters. Forward models are run for each perturbation. Amplitude deviations are summed in quadrature with the stacking error for a total, laterally varying, data error. The error estimation is repeated for a heterogeneous subseafloor model due to the large conductivity range (several orders of magnitude), which affects the forward model. The approach enables us to utilize data from several components (multiple electric fields, frequencies and receivers) in the inversion to constrain the final model and reduce ambiguity. The final model is geologically reasonable, in this case enabling the identification of conductive metal sulphide deposits on the seafloor.

Description: Along the Norwegian coasts and margins, extensive reefs of the stony coral Lophelia pertusa act as hotspots for local biodiversity. Climate models project that the temperature of Atlantic deep waters could rise by 1–3°C by 2100. In this context, understanding the effects of temperature on the physiology of cold-water species will help in evaluating their resilience to future oceanic changes. We investigated the response of L. pertusa to stepwise short-term increases in temperature. We sampled corals from four reefs, two located north of the Arctic circle and two at the mid-Norwegian shelf (boreal). In on-board experiments (one per reef), the sampled fragments were exposed to increasing temperatures from 5 to 15°C over 58 h. Respiration increased linearly by threefold for a 10°C increase. The short-term temperature increase did not induce mortality, cellular (neutral red assay for lysosome membrane stability; but one exception) or oxidative stress (lipid peroxidation assay) – to a few exceptions. However, the variability of the respiration responses depended on the experiment (i.e., reef location), possibly linked to the genetic structure of the individuals that we sampled (e.g., clones or siblings). The corals from the Arctic and boreal regions appear to have a high tolerance to the rapid temperature fluctuations they experience in the field. Over extended periods of time however, an increased metabolism could deplete the energy stored by the corals, if not met by an increased food availability and/or uptake. Empirical data on organisms’ thermal performance curves, such as the one presented in this study for L. pertusa, will be useful to implement predictive models on the responses of species and populations to climate change.

Description: Vertebrates are recognized as sentient beings. Consequently, urgent priority is now being given to understanding the needs and maximizing the welfare of animals under human care. The general health of animals is most commonly determined by physiological indices e.g., blood sampling, but may also be assessed by documenting behavior. Physiological health assessments, although powerful, may be stressful for animals, time-consuming and costly, while assessments of behavior can also be time-consuming, subject to bias and suffer from a poorly defined link between behavior and health. However, behavior is recognized as having the potential to code for stress and well-being and could, therefore, be used as an indicator of health, particularly if the process of quantifying behavior could be objective, formalized and streamlined to be time efficient. This study used Daily Diaries (DDs) (motion-sensitive tags containing tri-axial accelerometers and magnetometers), to examine aspects of the behavior of bycaught loggerhead turtles, Caretta caretta in various states of health. Although sample size limited statistical analysis, significant behavioral differences (in terms of activity level and turn rate) were found between “healthy” turtles and those with external injuries to the flippers and carapace. Furthermore, data visualization (spherical plots) clearly showed atypical orientation behavior in individuals suffering gas emboli and intestinal gas, without complex data analysis. Consequently, we propose that the use of motion-sensitive tags could aid diagnosis and inform follow-up treatment, thus facilitating the rehabilitation process. This is particularly relevant given the numerous rehabilitation programs for bycatch sea turtles in operation. In time, tag-derived behavioral biomarkers, TDBBs for health could be established for other species with more complex behavioral repertoires such as cetaceans and pinnipeds which also require rehabilitation and release. Furthermore, motion-sensitive data from animals under human care and wild conspecifics could be compared in order to define a set of objective behavioral states (including activity levels) for numerous species housed in zoos and aquaria and/or wild species to help maximize their welfare.

Description: Marine food webs form the major component of the biological pump and play a central role in the global carbon (C) cycle. Understanding the response of particular processes in marine food webs to changing environments is a prerequisite to predict changes in ecological functioning in the future ocean. Here, we experimentally assessed the effects of nitrogen:phosphorus (N:P) supply ratios (the molar ratios 10:1, 24:1, and 63:1) on elemental and biochemical quality of marine phytoplankton Rhodomonas sp., and the interactions between food quantity and quality on stoichiometric C:N:P, fatty acids (FAs) and reproductions in copepods Acartia tonsa. Overall, the stoichiometry of A. tonsa was to some extent homeostatic in response to the changing algal C:N and C:P ratios, with significant changes in C:N ratios of A. tonsa observed, especially under higher food quantities. The relative gross growth efficiencies (GGEs) for C and N (and P) were analyzed, revealing that copepods may achieve homeostasis by lowering the GGE for C while increasing it for the limiting nutrient. Egg production rates in A. tonsa were lowest on nutrient deficient diets under low food quantities. Reduced egg production rates may be attributed to the lowered GGEs for C and reduced transfer efficiency of essential FAs between phytoplankton and copepods, indicating interactive-essential effects of elements and FAs on copepod production. Our results highlight that nutrient deficiency in the environments may reduce energy transfer efficiency at the base of food webs by altering phytoplankton chemical composition, which can interact with food quantity and have implications on food web dynamics in the changing ocean.

Description: In the autumn of 2014, nine large mesocosms were deployed in the oligotrophic subtropical North-Atlantic coastal waters off Gran Canaria (Spain). Their deployment was designed to address the acidification effects of CO2 levels from 400 to 1,400 mu atm, on a plankton community experiencing upwelling of nutrient-rich deep water. Among other parameters, chlorophyll a (chl-a), potential respiration (Phi), and biomass in terms of particulate protein (B) were measured in the microplankton community (0.7-50.0 mu m) during an oligotrophic phase (Phase I), a phytoplankton-bloom phase (Phase II), and a post-bloom phase (Phase III). Here, we explore the use of the Phi/chl-a ratio in monitoring shifts in the microplankton community composition and its metabolism. Phi/chl-a values below 2.5 mu L O-2 h(-1) (mu g chl-a)(-1) indicated a community dominated by photoautotrophs. When Phi/chl-a ranged higher, between 2.5 and 7.0 mu L O-2 h(-1) (pg chl-a)(-1) , it indicated a mixed community of phytoplankton, microzooplankton and heterotrophic prokaryotes. When Phi/chl-a rose above 7.0 mu L O-2 h(-1) (mu g chl-a)(-1), it indicated a community where microzooplankton proliferated (〉10.0 mu L O-2 h(-1) (mu g chl-a)(-1)), because heterotrophic dinoflagellates bloomed. The first derivative of B, as a function of time (dB/dt), indicates the rate of protein build-up when positive and the rate of protein loss, when negative. It revealed that the maximum increase in particulate protein (biomass) occurred between 1 and 2 days before the chl-a peak. A day after this peak, the trough revealed the maximum net biomass loss. This analysis did not detect significant changes in particulate protein, neither in Phase I nor in Phase III. Integral analysis of Phi/chl-a and B, over the duration of each phase, for each mesocosm, reflected a positive relationship between 4) and pCO(2) during Phase II [alpha = 230.10-5 mu L O-2 h(-1) L-1 (patm CO2)(-1) (phase-day)(-1), R-2 = 0.30] and between chl-a and pCO(2) during Phase III [alpha = 100.10(-5) Ag chl-a L-1 (mu atmCO(2))(-1) (phase-day)(-1), R-2 = 0.84]. At the end of Phase II, a harmful algal species (HAS), Vicicitus globosus, bloomed in the high pCO(2) mesocosms. In these mesocosms, microzooplankton did not proliferate, and chl-a retention time in the water column increased. In these V globosus-disrupted communities, the (Phi/chl-a ratio [4.1 +/- 1.5 /mu L O-2 h(-1) (mu g chl-a)(-1)] was more similar to the Phi/chl-a ratio in a mixed plankton community than to a photoautotroph-dominated one.

Description: Due to ocean acidification and global warming, surface seawater of the western Baltic Sea is expected to reach an average of ∼1100 μatm pCO2 and an increase of ∼5°C by the year 2100. In four consecutive experiments (spanning 10–11 weeks each) in all seasons within 1 year, the abiotic factors temperature (+5°C above in situ) and pCO2 (adjusted to ∼1100 μatm) were tested for their single and combined effects on epibacterial communities of the brown macroalga Fucus vesiculosus and on bacteria present in the surrounding seawater. The experiments were set up in three biological replicates using the Kiel Outdoor Benthocosm facility (Kiel, Germany). Phylogenetic analyses of the respective microbiota were performed by bacterial 16S (V1-V2) rDNA Illumina MiSeq amplicon sequencing after 0, 4, 8, and 10/11 weeks per season. The results demonstrate (I) that the bacterial community composition varied in time and (II) that relationships between operational taxonomic units (OTUs) within an OTU association network were mainly governed by the habitat. (III) Neither single pCO2 nor pCO2:Temperature interaction effects were statistically significant. However, significant impact of ocean warming was detected varying among seasons. (IV) An indicator OTU (iOTU) analysis identified several iOTUs that were strongly influenced by temperature in spring, summer, and winter. In the warming treatments of these three seasons, we observed decreasing numbers of bacteria that are commonly associated with a healthy marine microbial community and—particularly during spring and summer—an increase in potentially pathogenic and bacteria related to intensified microfouling. This might lead to severe consequences for the F. vesiculosus holobiont finally affecting the marine ecosystem.

Description: In this paper, we investigate the seasonal and spatial variability of stratification on the Siberian shelves with a case study from the Laptev Sea based on shipboard hydrographic measurements, year-round oceanographic mooring records from 2013 to 2014 and chemical tracer-based water mass analyses. In summer 2013, weak onshore-directed winds caused spreading of riverine waters throughout much of the eastern and central shelf. In contrast, strong southerly winds in summer 2014 diverted much of the freshwater to the northeast, which resulted in 50% less river water and significantly weaker stratification on the central shelf compared with the previous year. Our year-long records additionally emphasize the regional differences in water column structure and stratification, where the northwest location was well-mixed for 6 months and the central and northeast locations remained stratified into spring due to the lower initial surface salinities of the river-influenced water. A 26 year record of ocean reanalysis highlights the region’s interannual variability of stratification and its dependence on winds and sea ice. Prior the mid-2000s, river runoff to the perennially ice-covered central Laptev Sea shelf experienced little surface forcing and river water was maintained on the shelf. The transition toward less summer sea ice after the mid-2000s increased the ROFI’s (region of freshwater influence) exposure to summer winds. This greatly enhanced the variability in mixed layer depth, resulting in several years with well-mixed water columns as opposed to the often year-round shallow mixed layers before. The extent of the Lena River plume is critical for the region since it modulates nutrient fluxes and primary production, and further controls intermediate heat storage induced by lateral density gradients, which has implications for autumnal freeze-up and the eastern Arctic sea ice volume. MAIN POINTS 1. CTD surveys and moorings highlight the regional and temporal variations in water column stratification on the Laptev Sea shelf. 2. Summer winds increasingly control the extent of the region of freshwater influence under decreasing sea ice. 3. Further reductions in sea ice increases surface warming, heat storage, and the interannual variability in mixed layer depth.

Description: Groundwater resources in coastal regions are facing enormous pressure caused by population growth and climate change. Few studies have investigated whether offshore freshened groundwater systems are connected with terrestrial aquifers recharged by meteoric water, or paleo-groundwater systems that are no longer associated with terrestrial aquifers. Distinguishing between the two has important implications for potential extraction to alleviate water stress for many coastal communities, yet very little is known about these connections, mainly because it is difficult to acquire continuous subsurface information across the coastal transition zone. This study presents a first attempt to bridge this gap by combining three complementary near-surface electromagnetic methods to image groundwater pathways within braided alluvial gravels along the Canterbury coast, South Island, New Zealand. We show that collocated electromagnetic induction, ground penetrating radar, and transient electromagnetic measurements, which are sensitive to electrical contrasts between fresh (low conductivity) and saline (high conductivity) groundwater, adequately characterize hydrogeologic variations beneath a mixed sand gravel beach in close proximity to the Ashburton River mouth. The combined measurements – providing information at three different depths of investigation and resolution – show several conductive zones that are correlated with spatial variations in subsurface hydrogeology. We interpret the conductive zones as high permeability conduits corresponding to lenses of well-sorted gravels and secondary channel fill deposits within the braided river deposit architecture. The geophysical surveys provide the basis for a discharge model that fits our observations, namely that there is evidence of a multilayered system focusing groundwater flow through stacked high permeability gravel layers analogous to a subterranean river network. Coincident geophysical surveys in a region further offshore indicate the presence of a large, newly discovered freshened groundwater system, suggesting that the offshore system in the Canterbury Bight is connected with the terrestrial aquifer system.

Description: The GO-SHIP nutrient manual covers all aspects of nutrient analysis from basic sample collection and storage, specifically for Continuous Flow analysis using an Auto-Analyzer, and describes some specific nutrient methods for Nitrate, Nitrite, Silicate, Phosphate and Ammonium that are in use by many laboratories carrying out at-sea analysis and repeat hydrography sections across the world. The focus is on segmented flow analyzers not flow injection analyzers. It also covers laboratory best practices including quality control and quality assurance (QC/QA) procedures to obtain the best results, and suggests protocols for the use of reference materials (RM) and certified reference materials (CRMs).

Description: Chromophoric dissolved organic matter (CDOM) is the dominant absorber of ultraviolet radiation in the ocean, but its sources within the ocean, as well as its chemical composition, remain uncertain. One source of marine CDOM is Sargassum, an epipelagic marine macro brown alga common to the Gulf of Mexico, Caribbean, and Western North Atlantic. Furthermore, Sargassum contains phlorotannins, a class of polyphenols that may have similar optical properties to terrestrial polyphenols. Here, we analyze Sargassum CDOM optical properties, acquired from absorption and fluorescence spectra of filtered samples collected during Sargassum exudation experiments in seawater tanks. To further evaluate the structural basis of Sargassum CDOM optical properties, Sargassum CDOM was collected by solid phase extraction (SPE) and its chemical composition was tested by pH titration and sodium borohydride reduction. These chemical tests revealed that Sargassum CDOM absorption spectra respond similarly to pH titration and borohydride reduction when compared to terrestrially-derived materials, but Sargassum CDOM has unique absorbance peaks in difference spectra that have not been observed in terrestrially-derived CDOM. These absorbance features are consistent with the deprotonation of modified Sargassum phlorotannins, which are likely highly related phenolic acids and polyphenols. Sargassum CDOM was also more rapidly photodegraded when compared to terrestrial CDOM such as Suwannee River Natural Organic Matter. Similar to terrestrial DOM, ultrahigh resolution mass spectrometry revealed that sunlight decreases relative abundances of m/z ions and molecular formulas with an average O/C ratio of 0.6 and an average H/C ratio of 0.9, suggesting preferential photodegradation and/or phototransformation of hydrogen-deficient and oxygenated compounds, such as Sargassum phlorotannins. Assuming a large fraction of Sargassum CDOM is quickly mineralized to CO2 during its rapid photodegradation, Sargassum could play a major role in marine photochemical carbon mineralization during its annual growth cycle

Description: Cold-water coral communities form complex benthic ecosystems in a distinct part of the water column. The exact processes supporting reef growth and changes with time are still partly unsolved. Recent studies have suggested a tidally driven hydraulic control of flow over topographic features as a driver for local downwelling at cold-water coral sites. This mechanism forms a link between surface and coral growth depths and is a driver of resuspension of the bottom material. Only few studies have concentrated on how these processes vary with the health status and structure of the cold-water coral occurrences. In this study, we explore the processes over tidal cycles by analysing in situ stratification, hydrography and velocity data which we then combine with local topography from seven Lophelia pertusa dominated eastern Atlantic cold-water coral sites. The “quality” of coral sites varies from thriving reefs to declining and dead coral sites. We show that living and healthy corals are concentrated at sites, where local hydrodynamics create overturning and mixing which support food supply for filter-feeding corals.

Description: Along mid-ocean ridges, submarine venting has been found at all spreading rates and in every ocean basin. By contrast, intraplate hydrothermal activity has only been reported from five locations, worldwide. Here we extend the time series at one of those sites, Teahitia Seamount, which was first shown to be hydrothermally active in 1983 but had not been revisited since 1999. Previously, submersible investigations had led to the discovery of low-temperature (≤30°C) venting associated with the summit of Teahitia Seamount at ≤1500 m. In December 2013 we returned to the same site at the culmination of the US GEOTRACES Eastern South Tropical Pacific (GP16) transect and found evidence for ongoing venting in the form of a non-buoyant hydrothermal plume at a depth of 1400 m. Multi-beam mapping revealed the same composite volcano morphology described previously for Teahitia including four prominent cones. The plume overlying the summit showed distinct in situ optical backscatter and redox anomalies, coupled with high concentrations of total dissolvable Fe (≤186 nmol/L) and Mn (≤33 nmol/L) that are all diagnostic of venting at the underlying seafloor. Continuous seismic records from 1986-present reveal a ∼15 year period of quiescence at Teahitia, following the seismic crisis that first stimulated its submersible-led investigation. Since 2007, however, the frequency of seismicity at Teahitia, coupled with the low magnitude of those events, are suggestive of magmatic reactivation. Separately, distinct seismicity at the adjacent Rocard seamount has also been attributed to submarine extrusive volcanism in 2011 and in 2013. Theoretical modeling of the hydrothermal plume signals detected suggest a minimum heat flux of 10 MW at the summit of Teahitia. Those model simulations can only be sourced from an area of low-temperature venting such as that originally reported from Teahitia if the temperature of the fluids exiting the seabed has increased significantly, from ≤30°C to ∼70°C. These model seafloor temperatures and our direct plume observations are both consistent with reports from Loihi Seamount, Hawaii, ∼10 year following an episode of seafloor volcanism. We hypothesize that the Society Islands hotspot may be undergoing a similar episode of both magmatic and hydrothermal reactivation.

Description: Marine organisms produce a vast diversity of metabolites with biological activities useful for humans, e.g., cytotoxic, antioxidant, anti-microbial, insecticidal, herbicidal, anticancer, pro-osteogenic and pro-regenerative, analgesic, anti-inflammatory, anticoagulant, cholesterol-lowering, nutritional, photoprotective, horticultural or other beneficial properties. These metabolites could help satisfy the increasing demand for alternative sources of nutraceuticals, pharmaceuticals, cosmeceuticals, food, feed, and novel bio-based products. In addition, marine biomass itself can serve as the source material for the production of various bulk commodities (e.g., biofuels, bioplastics, biomaterials). The sustainable exploitation of marine bio-resources and the development of biomolecules and polymers are also known as the growing field of marine biotechnology. Up to now, over 35,000 natural products have been characterized from marine organisms, but many more are yet to be uncovered, as the vast diversity of biota in the marine systems remains largely unexplored. Since marine biotechnology is still in its infancy, there is a need to create effective, operational, inclusive, sustainable, transnational and transdisciplinary networks with a serious and ambitious commitment for knowledge transfer, training provision, dissemination of best practices and identification of the emerging technological trends through science communication activities. A collaborative (net)work is today compelling to provide innovative solutions and products that can be commercialized to contribute to the circular bioeconomy. This perspective article highlights the importance of establishing such collaborative frameworks using the example of Ocean4Biotech, an Action within the European Cooperation in Science and Technology (COST) that connects all and any stakeholders with an interest in marine biotechnology in Europe and beyond.

Description: Multicellular organisms live in close association with a plethora of microorganism, which have a profound effect on multiple host functions. As such, the microbiota and its host form an intimate functional entity, termed the metaorganism or holobiont. But how does the metaorganism communicate? Which receptors recognize microbial signals, mediate the effect of the microbiota on host physiology or regulate microbiota composition and homeostasis? In this review we provide an overview on the function of different receptor classes in animal host-microbiota communication. We put a special focus on invertebrate hosts, including both traditional invertebrate models such as Drosophila melanogaster and Caenorhabditis elegans and “non-model” invertebrates in microbiota research. Finally, we highlight the potential of invertebrate systems in studying mechanism of host-microbiota interactions.

Description: The Mediterranean Sea is a small region of the global ocean but with a very active overturning circulation that allows surface perturbations to be transported to the interior ocean. Understanding of ventilation is important for understanding and predicting climate change and its impact on ocean ecosystems. To quantify changes of deep ventilation, we investigated the spatiotemporal variability of transient tracers (i.e. CFC-12 and SF6) observations combined with temporal evolution of hydrographic and oxygen observations in the Mediterranean Sea from 13 cruises conducted during 1987-2018, with emphasize on the update from 2011 to 2018. Spatially, both the Eastern and Western Mediterranean Deep Water (EMDW and WMDW) show a general west-to-east gradient of increasing salinity and potential temperature but decreasing oxygen and transient tracer concentrations. Temporally, stagnant and weak ventilation is found in most areas of the EMDW during the last decade despite the prevailing ventilation in the Adriatic Deep Water between 2011 and 2016, which could be a result of the weakened Adriatic source intensity. The EMDW has been a mixture of the older Southern Aegean Sea dense waters formed during the Eastern Mediterranean Transient (EMT) event, and the more recent ventilated deep-water of the Adriatic origin. In the western Mediterranean basin, we found uplifting of old WMDW being replaced by the new deep-water from the Western Mediterranean Transition (WMT) event and uplifting of the new WMDW toward the Alboran Sea. The temporal variability revealed enhanced ventilation after the WMT event but slightly weakened ventilation after 2016, which could be a result of combined influences from the eastern (for the weakened Adriatic source intensity) and western (for the weakened influence from the WMT event) Mediterranean Sea. Additionally, the Mediterranean Sea is characterized by a Tracer Minimum Zone (TMZ) at mid-depth of the water column attributed to the rapid deep ventilation so that the TMZ is the slowest ventilated layer. This zone of weak ventilation stretches across the whole Mediterranean Sea from the Levantine basin into the western basin.

Description: Climate change is characterized not only by an increase in mean temperature, but also an increase in the variability around the means causing extreme events like marine heatwaves. These events are expected to have strong influence on the ecology of marine foundation species such as the eelgrass Zostera marina. Bacterial and macroscopic foulers are ubiquitous in the marine environment; they can have detrimental impacts on macrophytes and warming is known to enhance bacterial fouling. Thus, to investigate the consequence of heatwaves on the chemical defense of eelgrass against microbial colonizers, we incubated Z. marina plants in the Kiel Outdoor Benthocosm system under ambient control conditions and two different heatwave treatments: a treatment experiencing two spring heatwaves followed by a summer heatwave, and a treatment only experiencing just the summer heatwave. The capacity to deter microbial colonizers was found to be significantly up-regulated in Z. marina from both heatwave treatments in comparison to Z. marina under control conditions, suggesting defense regulation of Z. marina in response to marine heatwaves. We conclude climate extremes such as heatwaves can trigger a regulation in the defense capacity, which could be necessary for resilience against climate change scenarios. Such dynamics in rapid regulation of defense capacity as found in this study could also apply to other host plant – microbe interactions under scenarios of ongoing climate change or extreme climate events like heatwaves.

Description: Coral-based reconstructions of sea surface temperatures (SSTs) using Sr/Ca, U/Ca and δ18O are important tools for quantitative analysis of past climate variabilities. However, post-depositional alteration of coral aragonite, particularly early diagenesis, restrict the accuracy of calibrated proxies even on young corals. Considering the diagenetic effects, we present new Mid to Late Holocene SST reconstructions on well-dated (U/Th: ∼70 yr to 5.4 ka) fossil Porites sp. collected from the Society Islands, French Polynesia. For few corals, quality pre-screening routines revealed the presence of secondary aragonite needles inside primary pore space, resulting in a mean increase in Sr/Ca ratios between 5-30%, in contrast to the massive skeletal parts. Characterized by a Sr/Ca above 10 mmol/mol, we interpret this value as the threshold between diagenetically altered and unaltered coral material. At a high-resolution, observed intra-skeletal variability of 5.4 to 9.9 mmol/mol probably reflects the physiological control of corals over their trace metal uptake, and individual variations controlled by CaCO3– precipitation rates. Overall, the Sr/Ca, U/Ca and δ18O trends are well correlated, but we observed a significant offset up to ± 7°C among the proxies on derived palaeo-SST estimates. It appears that the related alteration process tends to amplify temperature extremes, resulting in increased SST-U/Ca and SST-Sr/Ca gradients, and consequently their apparent temperature sensitivities. A relative SST reconstruction is still feasible by normalizing our records to their individual mean value defined as ΔSST. This approach shows that ΔSST records derived from different proxies agree with an amplitudinal variability of up to ± 2°C with respect to their Holocene mean value. Higher ΔSST values than the mean SSTs (Holocene warm periods) were recorded from ∼1.8 to ∼2.8 ka (Interval I), ∼3.7 to 4.0 ka (Interval III) and before ∼5 ka, while lower ΔSST values (Holocene cold periods, Interval II and IV) were recorded in between. The ensuing SST periodicity of ∼1.5 ka in the Society Islands record is in line with the solar activity reconstructed from 10Be and 14C production (Vonmoos et al., 2006), emphasizing the role of solar activity on climate variability during the Late Holocene.

Description: Deep-sea sponge grounds are underexplored ecosystems that provide numerous goods and services to the functioning of the deep-sea. This study assessed the prokaryotic diversity in embryos, recruits, and adults of Craniella zetlandica and Craniella infrequens, common and abundant representatives of deep-sea sponge grounds in the North Atlantic. Our results reveal that symbiont transmission in the two Craniella sponge species likely occurs vertically, as highly similar microbial consortia have been identified in adults, embryos, and recruits. Moreover, transmission electron microscopy revealed high abundances of sponge-associated microorganisms, among which Chloroflexi (SAR202) were identified as common representatives by amplicon sequencing and fluorescence in situ hybridization (FISH). Equal diversity metrices, a similar overall prokaryotic community composition and a distinct dominance of the phylum Chloroflexi within all life stages are the key findings of our analyses. Information such as presented here provide understanding on the recruitment of deep-sea sponge holobionts which is needed to develop integrated management tools of such vulnerable marine ecosystems.

Description: Global warming is considered to be the most severe threat to coral reefs globally, which makes it important for scientists to develop novel strategies that mitigate the impact of warming on corals and associated habitats. Artificial upwelling of cooler deep water to the surface layer may be a possible mitigation/management tool. In this study, we investigated the effect of simulated artificial upwelling with deep water off Bermuda collected at 50 m (24°C) and 100 m (20°C) on coral symbiont biology of 3 coral species (Montastrea cavernosa, Porites astreoides, and Pseudodiploria strigosa) in a temperature stress experiment. The following treatments were applied over a period of 3 weeks: (i) control at 28°C (ii) heat at 31°C, (iii) heat at 31°C+ deep water from 50 m depth, and (iv) heat at 31°C+ deep water from 100 m depth. Artificial upwelling was simulated over a period of 25 min on a daily basis resulting in a reduction of temperature for 2 h per day and the following degree-heating-weeks: 5.7°C-weeks for ii, 4.6°C-weeks for iii and 4.2°C-weeks for iv. Comparative analysis of photosynthetic rate, chlorophyll-a concentration and zooxanthellae density revealed a reduction of heat stress responses in artificial upwelling treatments in 2 of the 3 investigated species, and a stronger positive effect of 100-m water than 50-m water. These results indicate that artificial upwelling could be an effective strategy to mitigate coral bleaching during heat stress events allowing corals to adjust to increasing temperatures more gradually. It will still be necessary to further explore the ecological benefits as well as potential ecosystem impacts associated with different artificial upwelling scenarios to carefully implement an effective in situ artificial upwelling strategy in coral reefs.

Description: Coccolithophores are an important group of marine phytoplankton which cover themselves with the coccosphere – a shell composed of numerous calcium carbonate (CaCO3) platelets. Despite more than a century of coccolithophore research, it remains speculative why coccolithophores calcify. Resolving this question is essential to assess the competitive fitness of coccolithophores in the future ocean where changes in calcification are expected. Here, we used the Emiliania huxleyi – Emiliania huxleyi Virus 86 host-virus model system to test the hypothesis that the coccosphere serves as a physical barrier reducing viral infection. Therefore, we removed the coccosphere from living E. huxleyi cells and compared the infection progress relative to calcified cells in a series of 6 experiments under different growth conditions. We found that the coccosphere does not constitute an effective physical barrier against viral penetration, since non-growing calcified cells were susceptible to viral infection and lysis (growth stopped by light limitation). However, we also found that protection against the virus may depend on the daily growth cycle. E. huxleyi reached higher peak abundances when decalcified cells were allowed to rebuild their coccosphere before entering cell division phase and being exposed to the virus, thereby suggesting that rates of viral infection could be reduced by the coccosphere during the critical phase in the cell cycle. However, the benefit of this potential protection is arguably of limited ecological significance since the concentrations of both, calcified and decalcified E. huxleyi approached similar values until the end of the bloom. We conclude that the coccosphere provides at best a limited protection against infection with the EhV86.

Description: Active tectonics in long-lived orogenic belts usually manifests on the preexisting inherited structures. In the Kvarner region of the External Dinarides, an area with low-to-moderate seismicity related to the Adriatic microplate (Adria) northward movement, we deal with faults in predominantly carbonate rocks within tectonically complex NW-SE striking-and-thrust belt, which makes the identification and parametrization of the active structures challenging. Moreover, anthropogenic modifications greatly complicate access to the surface geological and geomorphological data. This paper demonstrates results of focused multidisciplinary research, from surface geological mapping and offshore shallow seismic surveys to earthquake focal mechanisms, as an active fault identification and parametrization kit, with a final goal to produce an across-methodological integrated model of the identified features in the future. Reverse, normal, and strike-slip orogen-parallel (longitudinal) to transverse faults were identified during geological mapping, but there is no clear evidence of their mutual relations and possible recent activity. The focal mechanisms calculated from the instrumental record include weak-to-moderate earthquakes and show solutions for all faulting types in the upper crust, compatible with the NE-SW oriented principal stress direction, with the stronger events favoring reverse and strike-slip faulting. The 3D spatial and temporal distribution of recent earthquake hypocenters indicate their clustering along predominantly subvertical transversal and steeply NE-dipping longitudinal planes. High-resolution shallow seismic geoacoustical survey (subbottom profiler) of the Quaternary sediments in the Rijeka Bay revealed local tectonic deformations of the stratified Late Pleistocene deposits that, along with overlaying mass-transport deposits, could imply prehistorical strong earthquake effects. Neotectonic faults onshore are tentatively recognized as highly fractured zones characterized by enhanced weathering, but there is no evidence for its recent activity. Thus, it seems that the active faults are blind and situated below the thin-skinned and highly deformed early-orogenic tectonic cover of the Adria. A strain accumulating deeper in the crust is probably irregularly redistributed near the surface along the preexisting fault network formed during the earlier phases of the Dinaric orogenesis. The results indicate a need for further multidisciplinary research that will contribute to a better seismic hazard assessment in the densely populated region that is also covered by strategic infrastructure.

Description: Phytoplankton play a central role in the regulation of global carbon and nutrient cycles, forming the basis of the marine food webs. A group of biogeochemically important phytoplankton, the coccolithophores, produce calcium carbonate scales that have been hypothesized to deter or reduce grazing by microzooplankton. Here, a meta-analysis of mesocosm-based experiments demonstrates that calcification of the cosmopolitan coccolithophore, Emiliania huxleyi, fails to deter microzooplankton grazing. The median grazing to growth ratio for E. huxleyi (0.56 ± 0.40) was not significantly different among non-calcified nano- or picoeukaryotes (0.71 ± 0.31 and 0.55 ± 0.34, respectively). Additionally, the environmental concentration of E. huxleyi did not drive preferential grazing of non-calcified groups. These results strongly suggest that the possession of coccoliths does not provide E. huxleyi effective protection from microzooplankton grazing. Such indiscriminate consumption has implications for the dissolution and fate of CaCO3 in the ocean, and the evolution of coccoliths.

Description: Vitamin B1 (thiamin) is an essential coenzyme for all cells. Recent findings from experimental cell biology and genome surveys have shown that thiamin cycling by plankton is far more complex than was previously understood. Many plankton cells cannot produce thiamin (are auxotrophic) and obligately require an exogenous source of thiamin or one or more of 5 different thiamin-related compounds (TRCs). Despite this emerging evidence for the evolution among plankton of complex interactions related to thiamin, the influence of TRCs on plankton community structure and productivity are not understood. We report measurements of three dissolved TRCs 4-amino-5-aminomethyl-2-methylpyrimidine (AmMP), 5-(2-hydroxyethyl)-4-methyl-1,3-thiazole-2-carboxylic acid (cHET), and 4-methyl-5-thiazoleethanol (HET) that have never before been assayed in seawater. Here we characterize them alongside other TRCs that were measured previously [thiamin and 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP)], in depth profiles from a latitudinal transect in the north Atlantic in March 2018. TRC concentrations ranged from femptomolar to picomolar. Surface depletion relative to a maximum near the bottom of the euphotic zone and low concentrations at deeper depths were consistent features. Our observations suggest that when bacterial abundance and production are low, TRC concentrations approach a steady state where TRC production and consumption terms are balanced. Standing stocks of TRCs also appear to be positively correlated with bacterial production. However, near the period of peak biomass in the accumulation phase of a bloom we observed an inverse relationship between TRCs and bacterial production, coincident with an increased abundance of Flavobacteria that comparative genomics indicates could be vitamin B1 auxotrophs. While these observations suggest that the dissolved pool of TRCs is often at steady state, with TRC production and consumption balanced, our data suggests that bloom induced shifts in microbial community structure and activity may cause a decoupling between TRC production and consumption, leading to increased abundances of some populations of bacteria that are putatively vitamin B1 auxotrophs.

Description: Over recent decades, observations based on merchant vessels (Ships of Opportunity—SOOP) equipped with sensors measuring the CO2 partial pressure (pCO2) in the surface seawater formed the backbone of the global ocean carbon observation system. However, the restriction to pCO2 measurements alone is one severe shortcoming of the current SOOP observatory. Full insight into the marine inorganic carbon system requires the measurement of at least two of the four measurable variables which are pCO2, total alkalinity (TA), dissolved inorganic carbon (DIC), and pH. One workaround is to estimate TA values based on established temperature-salinity parameterizations, but this leads to higher uncertainties and the possibility of regional and/or seasonal biases. Therefore, autonomous SOOP-based TA measurements are of great interest. Our study describes the implementation of a novel autonomous analyzer for seawater TA, the CONTROS HydroFIAⓇ TA system (-4H-JENA engineering GmbH, Germany) for unattended routine TA measurements on a SOOP line operating in the North Atlantic. We present the installation in detail and address major issues encountered with autonomous measurements using this analyzer, e.g., automated cleaning and stabilization routines, and waste handling. Another issue during long-term deployments is the provision of reference seawater in large-volume containers for quality assurance measurements and drift correction. Hence, a stable large-volume seawater storage had to be found. We tested several container types with respect to their suitability to store seawater over a time period of 30 days without significant changes in TA. Only one gas sampling bag made of polyvinylidene fluoride (PVDF) satisfied the high stability requirement. In order to prove the performance of the entire setup, we compared the autonomous TA measurements with TA from discrete samples taken during the first two trans-Atlantic crossings. Although the measurement accuracy in unattended mode (about ± 5 μmol kg^-1) slightly deteriorated compared to our previous system characterization, its overall uncertainty fulfilled requirements for autonomous TA measurements on SOOP lines. A comparison with predicted TA values based on an established and often used parameterization pointed at regional and seasonal limitations of such TA predictions. Consequently, TA observations with better coverage of spatiotemporal variability are needed, which is now possible with the method described here.

Description: Numerical simulations and emissions estimates of plastic in and to the ocean consistently over-predict the surface inventory, particularly in the case of microplastic (MP), i.e. fragments less than 5 mm in length. Sequestration in the sediments has been both predicted and, to a limited extent, observed. It has been hypothesized that biology may be exporting a significant fraction of surface MP by way of marine snow aggregation and zooplankton faecal pellets. We apply previously published data on MP concentrations in the surface ocean to an earth system model of intermediate complexity to produce a first estimate of the potential global sequestration of MP by marine aggregates, including faecal pellets. We find a MP seafloor export potential of between 7.3E3-4.2E5 metric tons per year, or about 0.06-8.8% of estimated total annual plastic ocean pollution rates. We find that presently, aggregates alone would have the potential to remove most existing surface ocean MP to the seafloor within less than 2 years if pollution ceases. However, the observed accumulation of MP in the surface ocean, despite this high potential rate of removal, suggests that detrital export is an ineffective pathway for permanent MP removal. We theorize a prominent role of MP biological fouling and de-fouling in the rapid recycling of aggregate-associated MP in the upper ocean. We also present an estimate of how the potential detrital MP sink might change into the future, as climate change (and projected increasing MP pollution) alters the marine habitat. The polar regions, and the Arctic in particular, are projected to experience increasing removal rates as export production increases faster than MP pollution. Northern hemisphere subtropical gyres are projected to experience slowing removal rates as stratification and warming decrease export production, and MP pollution increases. However, significant uncertainty accompanies these results.

Description: Improved comparability of nutrient concentrations in seawater is required to enhance the quality and utility of measurements reported to global databases. Significant progress has been made over recent decades in improving the analysis and data quality for traditional laboratory measurements of nutrients. Similar efforts are required to establish high-quality data outputs from in situ nutrient sensors, which are rapidly becoming integral components of ocean observing systems. This paper suggests using the good practices routine established for laboratory reference methods to propose a harmonized set of deployment protocols and of quality control procedures for nutrient measurements obtained from in situ sensors. These procedures are intended to establish a framework to standardize the technical and analytical controls carried out on the three main types of in situ nutrient sensors currently available (wet chemical analyzers, ultraviolet optical sensors, electrochemical sensors) for their deployments on all kinds of platform. The routine reference controls that can be applied to the sensors are listed for each step of sensor use: initial qualification under controlled conditions in the laboratory, preparation of the sensor before deployment, field deployment and finally the sensor recovery. The fundamental principles applied to the laboratory reference method are then reviewed in terms of the calibration protocol, instrumental interferences, environmental interferences, external controls, and method performance assessment. Data corrections (linearity, sensitivity, drifts, interferences and outliers) are finally identified along with the concepts and calculations for qualification for both real time and time delayed data. This paper emphasizes the necessity of future collaborations between research groups, reference-accredited laboratories, and technology developers, to maintain comparability of the concentrations reported for the various nutrient parameters measured by in situ sensors.

Description: Optical particle measurements are emerging as an important technique for understanding the ocean carbon cycle, including contributions to estimates of their downward flux, which sequesters carbon dioxide (CO2) in the deep sea. Optical instruments can be used from ships or installed on autonomous platforms, delivering much greater spatial and temporal coverage of particles in the mesopelagic zone of the ocean than traditional techniques, such as sediment traps. Technologies to image particles have advanced greatly over the last two decades, but the quantitative translation of these immense datasets into biogeochemical properties remains a challenge. In particular, advances are needed to enable the optimal translation of imaged objects into carbon content and sinking velocities. In addition, different devices often measure different optical properties, leading to difficulties in comparing results. Here we provide a practical overview of the challenges and potential of using these instruments, as a step toward improvement and expansion of their applications.

Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea-dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.

Description: Parasites are arguably among the strongest drivers of natural selection, constraining hosts to evolve resistance and tolerance mechanisms. Although, the genetic basis of adaptation to parasite infection has been widely studied, little is known about how epigenetic changes contribute to parasite resistance and eventually, adaptation. Here, we investigated the role of host DNA methylation modifications to respond to parasite infections. In a controlled infection experiment, we used the three-spined stickleback fish, a model species for host-parasite studies, and their nematode parasite Camallanus lacustris. We showed that the levels of DNA methylation are higher in infected fish. Results furthermore suggest correlations between DNA methylation and shifts in key fitness and immune traits between infected and control fish, including respiratory burst and functional trans-generational traits such as the concentration of motile sperm. We revealed that genes associated with metabolic, developmental and regulatory processes (cell death and apoptosis) were differentially methylated between infected and control fish. Interestingly, genes such as the neuropeptide FF receptor 2 and the integrin alpha 1 as well as molecular pathways including the Th1 and Th2 cell differentiation were hypermethylated in infected fish, suggesting parasite-mediated repression mechanisms of immune responses. Altogether, we demonstrate that parasite infection contributes to genome-wide DNA methylation modifications. Our study brings novel insights into the evolution of vertebrate immunity and suggests that epigenetic mechanisms are complementary to genetic responses against parasite-mediated selection.

Description: Hydrogen can in the future serve as an advantageous carrier of renewable energy if its production via water electrolysis and utilization in fuel cells are realized with high energy efficiency and non-precious electrocatalysts. In an unprecedented novel combination of structured electrodes with hydrogen converting enzymes from the uncultured and thus largely inaccessible microbial majority (〉99 %) we address this challenge. The geometrically defined electrodes with large specific surface area allow for low overpotentials and high energy efficiencies to be achieved. Enzymatic hydrogen evolution electrocatalysts are used as alternatives to noble metals. The enzymes are harnessed from the environmental microbial DNA (metagenomes) of hydrothermal vents exhibiting dynamic hydrogen and oxygen concentrations and are recovered via a recently developed novel activity-based screening tool. The screen enables us to target currently unrecognized hydrogenase enzymes from metagenomes via direct expression in a surrogate host microorganism. This circumvents the need for cultivation of the source organisms, the primary bottleneck when harnessing enzymes from microbes. One hydrogen converting metagenome-derived enzyme exhibited high activity and unusually high stability when dispersed on a TiO2-coated polyacrylonitrile fiber electrode. Our results highlight the tremendous potential of enzymes derived from uncultured microorganisms for applications in energy conversion and storage technologies.

Description: The vast majority of freshly produced oceanic dissolved organic carbon (DOC) is derived from marine phytoplankton, then rapidly recycled by heterotrophic microbes. A small fraction of this DOC survives long enough to be routed to the interior ocean, which houses the largest and oldest DOC reservoir. DOC reactivity depends upon its intrinsic chemical composition and extrinsic environmental conditions. Therefore, recalcitrance is an emergent property of DOC that is analytically difficult to constrain. New isotopic techniques that track the flow of carbon through individual organic molecules show promise in unveiling specific biosynthetic or degradation pathways that control the metabolic turnover of DOC and its accumulation in the deep ocean. However, a multivariate approach is required to constrain current carbon fluxes so that we may better predict how the cycling of oceanic DOC will be altered with continued climate change. Ocean warming, acidification, and oxygen depletion may upset the balance between the primary production and heterotrophic reworking of DOC, thus modifying the amount and/or composition of recalcitrant DOC. Climate change and anthropogenic activities may enhance mobilization of terrestrial DOC and/or stimulate DOC production in coastal waters, but it is unclear how this would affect the flux of DOC to the open ocean. Here, we assess current knowledge on the oceanic DOC cycle and identify research gaps that must be addressed to successfully implement its use in global scale carbon models.

Description: The genus Hydrogenovibrio consists of chemolithotrophic sulfur- and hydrogen-oxidizing bacteria that are found in diverse marine environments including hydrothermal vents where they can reach high cell numbers. Although several vent Hydrogenovibrio genomes encode for [NiFe]-hydrogenases (enzymes catalyzing the reversible reaction of hydrogen into protons and electrons), different attempts to grow these strains on hydrogen failed for a long time. Not long ago it was shown that some Hydrogenovibrio strains from hydrothermal vents are indeed able to oxidize hydrogen, which broadens their physiological spectrum in a competitive environment for energy sources. We here identify two active hydrogen consuming bacteria of the Hydrogenovibrio genus with different hydrogenase genes from vents in the South Pacific Ocean. Based on our results, hydrogen consuming Hydrogenovibrio species seem to be much more widespread in the oceans than expected.

Description: How ecological and evolutionary processes interact and together determine species and community responses to climate change is poorly understood. We studied long-term dynamics (over approximately 200 asexual generations) in two phytoplankton species, a coccolithophore (Emiliania huxleyi), and a diatom (Chaetoceros affinis), to increased CO2 growing alone, or competing with one another in co-occurrence. To allow for rapid evolutionary responses, the experiment started with a standing genetic variation of nine genotypes in each of the species. Under co-occurrence of both species, we observed a dominance shift from C. affinis to E. huxleyi after about 120 generations in both CO2 treatments, but more pronounced under high CO2. Associated with this shift, we only found weak adaptation to high CO2 in the diatom and none in the coccolithophore in terms of species’ growth rates. In addition, no adaptation to interspecific competition could be observed by comparing the single to the two-species treatments in reciprocal assays, regardless of the CO2 treatment. Nevertheless, highly reproducible genotype sorting left only one genotype remaining for each of the species among all treatments. This strong evolutionary selection coincided with the dominance shift from C. affinis to E. huxleyi. Since all other conditions were kept constant over time, the most parsimonious explanation for the dominance shift is that the strong evolutionary selection was driven by the experimental nutrient conditions, and in turn potentially altered competitive ability of the two species. Thus, observed changes in the simplest possible two-species phytoplankton “community” demonstrated that eco-evolutionary interactions can be critical for predicting community responses to climate change in rapidly dividing organisms such as phytoplankton.

Description: The aim of this brief research report was to define the consequential shifts in biomass and trophic structure of an ecosystem surrounding an offshore monoculture fish farm in Israel. It attempts to clarify the impact of the industry expansion and input of artificial fish pellets on functional group biomasses. We account for the direct addition of artificial food pellets, the metabolic wastes from the caged fish in a mass-balance food web model (Ecopath), as well as the temporal expansion of the farm’s production capacity to 21,000 t over a 30-year period (Ecosim). In the static mass-balance model of the food web, the addition of the fish cages at its current production size of 1000 t does not adversely affect the system, and trophic energy transfer is still dependent on primary production versus the detrital pathway. The model suggests a semi-stable ecosystem with low trophic interactions. With time, the increase in fish farming at the site is characterized by an increase of all functional group biomasses at the site over the 30-year period. The accumulation in detritus most notably correlates to greater biomass for all benthic functional niches and their secondary consumers. It is, therefore, apt to develop an indicator species list to indicate negative site disturbance. In summary, the sediment column condition will be the main indicator for ecosystem stability, as well as the increase in apex predators that are attracted to the site from the accumulation of discards at the cage bottom

Description: Much is known about how broad eukaryotic phytoplankton groups vary according to nutrient availability in marine ecosystems. However, genus- and species-level dynamics are generally unknown, although important given that adaptation and acclimation processes differentiate at these levels. We examined phytoplankton communities across seasonal cycles in the North Atlantic (BATS) and under different trophic conditions in the eastern North Pacific (ENP), using phylogenetic classification of plastid-encoded 16S rRNA amplicon sequence variants (ASVs) and other methodologies, including flow cytometric cell sorting. Prasinophytes dominated eukaryotic phytoplankton amplicons during the nutrient-rich deep-mixing winter period at BATS. During stratification (‘summer’) uncultured dictyochophytes formed ~35 ± 10% of all surface plastid amplicons and dominated those from stramenopile algae, whereas diatoms showed only minor, ephemeral contributions over the entire year. Uncultured dictyochophytes also comprised a major fraction of plastid amplicons in the oligotrophic ENP. Phylogenetic reconstructions of near-full length 16S rRNA sequences established 11 uncultured Dictyochophyte Environmental Clades (DEC). DEC-I and DEC-VI dominated surface dictyochophytes under stratification at BATS and in the ENP, and DEC-IV was also important in the latter. Additionally, although less common at BATS, Florenciella-related clades (FC) were prominent at depth in the ENP. In both ecosystems, pelagophytes contributed notably at depth, with PEC-VIII (Pelagophyte Environmental Clade) and (cultured) Pelagomonas calceolata being most important. Q-PCR confirmed the near absence of P. calceolata at the surface of the same oligotrophic sites where it reached ~1,500 18S rRNA gene copies ml-1 at the DCM. To further characterize phytoplankton present in our samples, we performed staining and at-sea single-cell sorting experiments. Sequencing results from these indicated several uncultured dictyochophyte clades are comprised of predatory mixotrophs. From an evolutionary perspective, these cells showed both conserved and unique features in the chloroplast genome, with high expression of multiple genes and a selfish element (group II intron) in ENP metatranscriptomes. Comparative analyses across the Pacific and Atlantic sites support the conclusion that predatory dictyochophytes thrive under low nutrient conditions. The observations that several uncultured dictyochophyte lineages are seemingly capable of photosynthesis and predation, raises questions about potential shifts in phytoplankton trophic roles associated with seasonality and long-term ocean change.

Description: Considerable effort is being deployed to predict the impacts of climate change and anthropogenic activities on the ocean's biophysical environment, biodiversity, and natural resources to better understand how marine ecosystems and provided services to humans are likely to change and explore alternative pathways and options. We present an updated version of EcoOcean (v2), a spatial-temporal ecosystem modeling complex of the global ocean that spans food-web dynamics from primary producers to top predators. Advancements include an enhanced ability to reproduce spatial-temporal ecosystem dynamics by linking species productivity, distributions, and trophic interactions to the impacts of climate change and worldwide fisheries. The updated modeling platform is used to simulate past and future scenarios of change, where we quantify the impacts of alternative configurations of the ecological model, responses to climate-change scenarios, and the additional impacts of fishing. Climate-change scenarios are obtained from two Earth-System Models (ESMs, GFDL-ESM2M, and IPSL-CMA5-LR) and two contrasting emission pathways (RCPs 2.6 and 8.5) for historical (1950-2005) and future (2006-2100) periods. Standardized ecological indicators and biomasses of selected species groups are used to compare simulations. Results show how future ecological trajectories are sensitive to alternative configurations of EcoOcean, and yield moderate differences when looking at ecological indicators and larger differences for biomasses of species groups. Ecological trajectories are also sensitive to environmental drivers from alternative ESM outputs and RCPs, and show spatial variability and more severe changes when IPSL and RCP 8.5 are used. Under a non-fishing configuration, larger organisms show decreasing trends, while smaller organisms show mixed or increasing results. Fishing intensifies the negative effects predicted by climate change, again stronger under IPSL and RCP 8.5, which results in stronger biomass declines for species already losing under climate change, or dampened positive impacts for those increasing. Several species groups that win under climate change become losers under combined impacts, while only a few (small benthopelagic fish and cephalopods) species are projected to show positive biomass changes under cumulative impacts. EcoOcean v2 can contribute to the quantification of cumulative impact assessments of multiple stressors and of plausible ocean-based solutions to prevent, mitigate and adapt to global change.

Description: Ecological processes and intra-specific genetic diversity reciprocally affect each other. While the importance of uniting ecological variables and genetic variation to understand species’ plasticity, adaptation, and evolution is increasingly recognized, only few studies have attempted to address the intersection of population ecology and genetics using marine macrophyte as models. Representative empirical case studies on genetic diversity are reviewed that explore ecological and evolutionary processes in marine macrophytes. These include studies on environment-induced phenotypic plasticity and associated ecological adaptation; population genetic variation and structuring driven by ecological variation; and ecological consequences mediated by intraspecific and interspecific diversity. Knowledge gaps are also discussed that impede the connection of ecology and genetics in macrophytes and possible approaches to address these issues. Finally, an eco-evolutionary perspective is advocated, by incorporating structural-to-functional genomics and life cycle complexity, to increase the understanding of the adaptation and evolution of macrophytes in response to environmental heterogeneity.

Description: The Asian summer monsoon affects the lives of billions of people. With the aim of identifying geochemical tracers for the monsoon-related freshwater input from the major rivers draining into the Bay of Bengal (BoB) and the Andaman Sea (AnS), we have analyzed the yttrium and rare earth element (YREE) concentration of surface seawater samples from various locations spanning the Andaman Islands in 2011 to 2013. In some locations, samples have been taken in March, July, and November 2011, thus spanning the seasonal cycle and including different monsoon phases. Generally, the YREE patterns are similar to those reported for offshore samples from the BoB and AnS in January 1997, with seawater-normalized patterns of most samples characterized by middle REE enrichments. An enhancement of these middle REE bulges accompanies large increases in dissolved REE concentrations from streams and sediment-rich areas such as mangrove environments. Conversely, some samples, in particular those taken 1–2 days after heavy rainfall in March 2011, show pronounced REE scavenging accompanied by the preferential removal of dissolved light REEs (LREEs) and by higher Y/Ho ratios. The Nd isotope signature of the remaining dissolved REE phase of these low YREE samples is more radiogenic than local rocks and sediments. The time series at a location away from local input sources show remarkably similar REE patterns and concentrations in March and July. Then in October–November, following the peak in monsoon-induced river discharge, the dissolved REE concentrations increase by almost a factor of two, whereas Nd isotopes become less radiogenic by 1.5 εNd units. These unradiogenic values are found at the same site in the winter dry season of the following year, demonstrating the decoupling of sea surface salinity (SSS) and Nd. The large sub-annual variability of YREE concentrations and Nd isotopes encountered was likely caused by the conversion of YREE from the dissolved (probably colloidal) pool to the labile particulate fraction. The comparison of unfiltered and filtered sample concentrations reveals the existence of a large labile particulate pool in the BoB and AnS that most likely originates from the massive river sediment fluxes and is instrumental in the seasonal changes observed.

Description: In the present study, we profiled bacterial and archaeal communities from 13 phylogenetically diverse deep-sea sponge species (Demospongiae and Hexactinellida) from the South Pacific by 16S rRNA-gene amplicon sequencing. Additionally, the associated bacteria and archaea were quantified by real-time qPCR. Our results show that bacterial communities from the deep-sea sponges are mostly host-species specific similar to what has been observed for shallow-water demosponges. The archaeal deep-sea sponge community structures are different from the bacterial community structures in that they are almost completely dominated by a single family, which are the ammonia-oxidizing genera within the Nitrosopumilaceae. Remarkably, the archaeal communities are mostly specific to individual sponges (rather than sponge-species), and this observation applies to both hexactinellids and demosponges. Finally, archaeal 16s gene numbers, as detected by quantitative real-time PCR, were up to three orders of magnitude higher than in shallow-water sponges, highlighting the importance of the archaea for deep-sea sponges in general.

Description: The establishment of epibacterial communities is fundamental to seaweed health and fitness, in modulating ecological interactions and may also facilitate adaptation to new environments. Abiotic factors like salinity can determine bacterial abundance, growth and community composition. However, influence of salinity as a driver of epibacterial community composition (until species level) has not been investigated for seaweeds and especially under long time scales. We also do not know how abiotic stressors may influence the ‘core’ bacterial species of seaweeds. Following an initial (immediately after field collection) sampling of epibacterial community of an invasive red seaweed Agarophyton vermicullophylum, we conducted a long term mesocosm experiment for 5 months, to examine the influence of three different salinities (low, medium and high) at two different time points (3 months after start of experiment and 5 months, i.e., at the end of experiment) on the epibacterial community richness and composition of Agarophyton. Metagenomic sequencing showed that epibacterial communities changed significantly according to salinity and time points sampled. Epibacterial richness was significantly different between low and high salinities at both time points. Epibacterial richness also varied significantly between 3 months (after start of experiment) and 5 months (end of experiment) within low, medium and high salinity level. Irrespective of salinity levels and time points sampled 727 taxa consistently appeared in all Agarophyton samples hinting at the presence of core bacterial species on the surface of the alga. Our results indicate that both salinity and time can be major driving forces in structuring epibacterial communities of seaweeds with respect to richness and β-diversity. We highlight the necessity of conducting long term experiments allowing us to detect and understand epibacterial succession over time on seaweeds.

Description: Arctic Ocean primary productivity is limited by light and inorganic nutrients. With sea ice cover declining in recent decades, nitrate limitation has been speculated to become more prominent. Although much has been learned about nitrate supply from general patterns of ocean circulation and water column stability, a quantitative analysis requires dedicated turbulence measurements that have only started to accumulate in the last dozen years. Here we present new observations of the turbulent vertical nitrate flux in the Laptev Sea, Baffin Bay, and Young Sound (North-East Greenland), supplementing a compilation of 13 published estimates throughout the Arctic Ocean. Combining all flux estimates with a Pan-Arctic database of in situ measurements of nitrate concentration and density, we found the annual nitrate inventory to be largely determined by the strength of stratification and by bathymetry. Nitrate fluxes explained the observed regional patterns and magnitudes of both new primary production and particle export on annual scales. We argue that with few regional exceptions, vertical turbulent nitrate fluxes can be a reliable proxy of Arctic primary production accessible through autonomous and large-scale measurements. They may also provide a framework to assess nutrient limitation scenarios based on clear energetic and mass budget constraints resulting from turbulent mixing and freshwater flows.

Description: International Ocean Discovery Program (IODP) Expedition 351 “Izu–Bonin–Mariana (IBM) Arc Origins” drilled Site U1438, situated in the north-western region of the Philippine Sea. Here volcaniclastic sediments and the igneous basement of the proto-IBM volcanic arc were recovered. To gain a better understanding of the magmatic processes and evolution of the proto-IBM arc, we studied melt inclusions hosted in fresh igneous minerals and sampled from 30- to 40-Ma-old deposits, reflecting the maturation of arc volcanism following subduction initiation at 52 Ma. We performed a novel statistical analysis on the major element composition of 237 representative melt inclusions selected from a previously published dataset, covering the full age range between 30 and 40 Ma. In addition, we analysed volatiles (H2O, S, F and Cl) and P2O5 by Secondary Ion Mass Spectrometry (SIMS) for a subset of 47 melt inclusions selected from the dataset. Based on statistical analysis of the major element composition of melt inclusions and by considering their trace and volatile element compositions, we distinguished five main clusters of melt inclusions, which can be further separated into a total of eight subclusters. Among the eight subclusters, we identified three major magma types: (1) enriched medium-K magmas, which form a tholeiitic trend (30–38 Ma); (2) enriched medium-K magmas, which form a calc-alkaline trend (30–39 Ma); and (3) depleted low-K magmas, which form a calc-alkaline trend (35–40 Ma). We demonstrate that (1) the eruption of depleted low-K calc-alkaline magmas occurred prior to 40 Ma and ceased sharply at 35 Ma; (2) the eruption of depleted low-K calc-alkaline magmas, enriched medium-K calc-alkaline magmas and enriched medium-K tholeiitic magmas overlapped between 35 and 38 − 39 Ma; and (3) the eruption of enriched medium-K tholeiitic and enriched medium-K calc-alkaline magmas became predominant thereafter at the proto-IBM arc. Identification of three major magma types are distinct from the previous work, in which enriched medium-K calc-alkaline magmas and depleted low-K calc-alkaline magmas were not identified. This indicates the usefulness of our statistical analysis as a powerful tool to partition a mixture of multivariable geochemical datasets, such as the composition of melt inclusions in this case. Our data suggest that a depleted mantle source had been replaced by an enriched mantle source due to convection beneath the proto-IBM arc from >40 to 35 Ma. Finally, thermodynamic modelling indicates that the overall geochemical variation of melt inclusions assigned to each cluster can be broadly reproduced either by crystallisation differentiation assuming P = 50 MPa (∼2-km deep) and ∼2 wt % H2O (almost saturated H2O content at 50 MPa) or P = 300 MPa (∼15-km deep) and ∼6 wt % H2O (almost saturated H2O content at 300 MPa). Assuming oxygen fugacity (fO2) of log fO2 equal to + 1 relative to nickel-nickel oxide (NNO) buffer best reproduces the overall geochemical variation of melt inclusions, but assuming a more oxidising conditions (log fO2 = +1 to + 2 NNO) likely reproduces the geochemical variation of enriched medium-K and calc-alkaline melt inclusions (30 − 39 Ma).

Description: The present study quantified prey preferences by adult males and females of the mysid Mesopodopsis wooldridgei fed the calanoid copepods Pseudodiaptomus hessei and Paracartia longipatella at varying proportions. Both sexes of M. wooldridgei showed a lack of prey switching and a strong preference for the smaller, less active P. longipatella irrespective of density. Given a lack of low-density prey refuge, this finding may have important implications for the distribution of P. longipatella in estuaries along the eastern seaboard of South Africa. Results of the present study contribute to a growing body of literature that suggests that selective predation may play an important role in structuring plankton prey populations in shallow water ecosystems.

Description: The repeated transgression and regression of coastlines mediated by the late Quaternary glacial–interglacial cycles make the northwest Pacific a hot spot to study marine speciation and population diversity. The red alga Agarophyton vermiculophyllum is an ecologically important species native to the northwest Pacific, capturing considerable research interest due to its wide-range invasiveness in Europe and North America. However, the knowledge of phylogeographic structure and intraspecific genetic diversity across the entire native range was still scarce. Here, we used 1,214-bp of mitochondrial cytochrome c oxidase subunit 1 (cox1) to explore phylogeographic patterns, lineage structure, and population genetic differentiation of 48 A. vermiculophyllum populations in the northwest Pacific. Our DNA data revealed overall high haplotype diversity and low nucleotide diversity and five phylogeographically structured genetic lineages that diverged significantly from each other. S-DIVA analysis showed the ancestors of A. vermiculophyllum originating from multiple areas encompassing the Japan–Pacific coast, East and South China Seas. This combined evidence indicates that A. vermiculophyllum might have survived in multiple scattered glacial refugia during the late Quaternary climate oscillations in the northwest Pacific. Such knowledge may help to better understand how palaeoclimate interacted with contemporary environments to contribute to intraspecific genetic variation and provide a new perspective for conserving natural resource of A. vermiculophyllum in the northwest Pacific.

Description: The two toothed jaws of cichlid fishes provide textbook examples of convergent evolution. Tooth phenotypes such as enlarged molar-like teeth used to process hard-shelled molluscs have evolved numerous times independently during cichlid diversification. While the ecological benefit of molar-like teeth to crush prey is known, it is unclear whether the same molecular mechanisms underlie these convergent traits. To identify genes involved in the evolution and development of enlarged cichlid teeth, we performed RNA-seq on the serially homologous toothed oral and pharyngeal jaws as well as the fourth toothless gill arch of Astatoreochromis alluaudi. We identified 27 genes that are highly upregulated on both tooth-bearing jaws compared to the toothless gill arch. Most of these genes have never been reported to play a role in tooth formation. Two of these genes (unk, rpfA) are not found in other vertebrate genomes but are present in all cichlid genomes. They also cluster genomically with two other highly expressed tooth genes (odam, scpp5) that exhibit conserved expression during vertebrate odontogenesis. Unk and rpfA were confirmed via in situ hybridization to be expressed in developing teeth of Astatotilapia burtoni. We then examined expression of the cluster's four genes in six evolutionarily independent and phylogenetically disparate cichlid species pairs each with a large- and a small-toothed species. Odam and unk commonly and scpp5 and rpfA always showed higher expression in larger-toothed cichlid jaws. Convergent trophic adaptations across cichlid diversity are associated with the repeated developmental deployment of this genomic cluster containing conserved and novel cichlid-specific genes.

Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.

Description: Cytospora canker is a destructive disease of numerous hosts and causes serious economic losses with a worldwide distribution. Identification of Cytospora species is difficult due to insufficient phylogenetic understanding and overlapped morphological characteristics. In this study, we provide an assessment of 23 Cytospora spp., which covered nine genera of Rosaceae, and focus on 13 species associated with symptomatic branch or twig canker and dieback disease in China. Through morphological observation and multilocus phylogeny of internal transcribed spacer (ITS), large nuclear ribosomal RNA subunit (LSU), actin (act), RNA polymerase II subunit (rpb2), translation elongation factor 1-α (tef1-α), and beta-tubulin (tub2) gene regions, the results indicate 13 distinct lineages with high branch support. These include 10 new Cytospora species, i.e., C. cinnamomea, C. cotoneastricola, C. mali-spectabilis, C. ochracea, C. olivacea, C. pruni-mume, C. rosicola, C. sorbina, C. tibetensis, and C. xinjiangensis and three known taxa including Cytospora erumpens, C. leucostoma, and C. parasitica. This study provides an initial understanding of the taxonomy of Cytospora associated with canker and dieback disease of Rosaceae in China.

Description: Organisms and their resident microbial communities - the microbiome - form a complex and mostly stable ecosystem. It is known that the composition of the microbiome and bacterial species abundances can have a major impact on host health and Darwinian fitness, but the processes that lead to these microbial patterns have not yet been identified. We here apply the niche concept and trait-based approaches as a first step in understanding the patterns underlying microbial community assembly and structure in the simple metaorganism Hydra. We find that the carrying capacities in single associations do not reflect microbiota densities as part of the community, indicating a discrepancy between the fundamental and realized niche. Whereas in most cases, the realized niche is smaller than the fundamental one, as predicted by theory, the opposite is observed for Hydra’s two main bacterial colonizers. Both, Curvibacter sp. and Duganella sp. benefit from association with the other members of the microbiome and reach higher fractions as compared to when they are the only colonizer. This cannot be linked to any particular trait that is relevant for interacting with the host or by the utilization of specific nutrients but is most likely determined by metabolic interactions between the individual microbiome members.

Description: Artificial upwelling (AU) is a novel geoengineering technology that brings seawater from the deep ocean to the surface. Within the context of global warming, AU techniques are proposed to reduce sea surface temperature at times of thermal stress around coral reefs. A computationally fast but coarse 3D Earth System model (3.6° longitude × 1.8° latitude) was used to investigate the environmental impacts of hypothetically implemented AU strategies in the Great Barrier Reef, South China Sea, and Hawaiian regions. While omitting the discussion on sub-grid hydrology, we simulated in our model a water translocation from either 130 or 550 m depth to sea surface at rates of 1 or 50 m3 s−1 as analogues to AU implementation. Under the Representative Concentration Pathway 8.5 emissions scenario from year 2020 on, the model predicted a prevention of coral bleaching until the year 2099 when AU was implemented, except under the least intense AU scenario (water from 130 m depth at 1 m3 s−1). Yet, intense AU implementation (water from 550 m depth at 50 m3 s-1) will likely have adverse effects on coral reefs by overcooling the surface water, altering salinity, decreasing calcium carbonate saturation, and considerably increasing nutrient levels. Our result suggests that if we utilize AU for mitigating coral bleaching during heat stress, AU implementation needs to be carefully designed with respect to AU’s location, depth, intensity and duration so that undesirable environmental effects are minimized. Following a proper installation and management procedure, however, AU has the potential to decelerate destructive bleaching events and buy corals more time to adjust to climate change.

Description: The temperate seagrass species eelgrass Zostera marina can be infected by the wasting disease pathogen Labyrinthula zosterae, which is believed to have killed about 90% of the seagrass in the Atlantic Ocean in the 1930s. It is not known why this opportunistic pathogen sometimes becomes virulent, but the recurrent outbreaks may be due to a weakening of the Z. marina plants from adverse environmental changes. This study investigated the individual and interactive effects of multiple extrinsic factors (temperature, light, and tissue damage) on the host-pathogen interaction between Z. marina and L. zosterae in a fully crossed infection experiment. The degree of infection was measured as both lesion coverage and L. zosterae cell concentration. We also investigated if the treatment factors affect the chemical defense of the host, measured as the inhibitory capacity of seagrass extracts in bioassays with L. zosterae. Finally, gene expression of a set of targeted genes was quantified in order to investigate how the treatments change Z. marina’s response to infection. Light had a pronounced effect on L. zosterae infection measured as lesion coverage, where reduced light conditions increased lesions by 35%. The response to light on L. zosterae cell concentration was more complex and showed significant interaction with the temperature treatment. Cell concentration was also significantly affected by physical damage, where damage surprisingly resulted in a reduced cell concentration of the pathogen. No treatment factor caused detectable decrease in the inhibitory capacity of the seagrass extracts. There were several interactive effects between L. zosterae infection and the treatment factors on Z. marina growth, and on the expression of genes associated with immune defense, phenol synthesis and primary metabolism, showing that the molecular reaction toward L. zosterae infection depends on prevailing environmental conditions. Our study shows that individual or interactive effects of light, temperature and tissue damage can affect multiple aspects of host-pathogen interactions in seagrasses. These results highlight the complexity of marine host-pathogen systems, showing that more multi-factorial investigations are needed to gain a better understanding of disease in marine plants under different environmental conditions.

Description: Microbial food web organisms are at the base of the functioning of pelagic ecosystems and support the whole marine food web. They are very reactive to environmental changes and their interactions are modified in response to different productive periods such as phytoplankton bloom and non-bloom as well as contrasted climatic years. To study ecological associations, identify potential interactions between microorganisms and study the structure of the microbial food web in coastal waters, a weekly monitoring was carried out in the Thau Lagoon on the French Mediterranean coast. The monitoring lasted from winter to late spring during two contrasting climatic years, a typical Mediterranean (2015) and a year with an extreme warm winter (2016). Correlation networks comprising 110 groups/taxa/species were constructed to characterize potential possible interactions between the microorganisms during bloom and non-bloom periods. Complex correlation networks during the bloom and dominated by negative intraguild correlations and positive correlations of phytoplankton with bacteria. Such pattern can be interpreted as a dominance of competition and mutualism. In contrast, correlation networks during the non-bloom period were less complex and mostly dominated by tintinnids associations with bacteria mostly referring to potential feeding on bacteria, which suggests a shift of biomass transfer from phytoplankton-dominated food webs during bloom to more bacterioplankton-based food webs during non-bloom. Inter-annual climatic conditions significantly modified the structure of microbial food webs. The warmer year favored relationships among smaller group/taxa/species at the expense of large phytoplankton and ciliates, possibly due to an intensification of the trophic cascade with a potential shift in energy circulation through microbial food web. Our study compares a typical Mediterranean spring with another mimicking the prospected intensification of global warming; if such consideration holds true, the dominance of future coastal marine ecosystems will be shifted from the highly productive herbivorous food web to the less productive microbial food web.

Description: Continental slopes – steep regions between the shelf break and abyssal ocean – play key roles in the climatology and ecology of the Arctic Ocean. Here, through review and synthesis, we find that the narrow slope regions contribute to ecosystem functioning disproportionately to the size of the habitat area (∼6% of total Arctic Ocean area). Driven by inflows of sub-Arctic waters and steered by topography, boundary currents transport boreal properties and particle loads from the Atlantic and Pacific Oceans along-slope, thus creating both along and cross-slope connectivity gradients in water mass properties and biomass. Drainage of dense, saline shelf water and material within these, and contributions of river and meltwater also shape the characteristics of the slope domain. These and other properties led us to distinguish upper and lower slope domains; the upper slope (shelf break to ∼800 m) is characterized by stronger currents, warmer sub-surface temperatures, and higher biomass across several trophic levels (especially near inflow areas). In contrast, the lower slope has slower-moving currents, is cooler, and exhibits lower vertical carbon flux and biomass. Distinct zonation of zooplankton, benthic and fish communities result from these differences. Slopes display varying levels of system connectivity: (1) along-slope through property and material transport in boundary currents, (2) cross-slope through upwelling of warm and nutrient rich water and down-welling of dense water and organic rich matter, and (3) vertically through shear and mixing. Slope dynamics also generate separating functions through (1) along-slope and across-slope fronts concentrating biological activity, and (2) vertical gradients in the water column and at the seafloor that maintain distinct physical structure and community turnover. At the upper slope, climatic change is manifested in sea-ice retreat, increased heat and mass transport by sub-Arctic inflows, surface warming, and altered vertical stratification, while the lower slope has yet to display evidence of change. Model projections suggest that ongoing physical changes will enhance primary production at the upper slope, with suspected enhancing effects for consumers. We recommend Pan-Arctic monitoring efforts of slopes given that many signals of climate change appear there first and are then transmitted along the slope domain.

Description: Data from coastal tide gauges, oceanographic moorings, and a numerical model show that Arctic storm surges force continental shelf waves (CSWs) that dynamically link the circumpolar Arctic continental shelf system. These trains of barotropic disturbances result from coastal convergences driven by cross-shelf Ekman transport. Observed propagation speeds of 600−3000 km day–1, periods of 2−6 days, wavelengths of 2000−7000 km, and elevation maxima near the coast but velocity maxima near the upper slope are all consistent with theoretical CSW characteristics. Other, more isolated events are tied to local responses to propagating storm systems. Energy and phase propagation is from west to east: ocean elevation anomalies in the Laptev Sea follow Kara Sea anomalies by one day and precede Chukchi and Beaufort Sea anomalies by 4−6 days. Some leakage and dissipation occurs. About half of the eastward-propagating energy in the Kara Sea passes Severnaya Zemlya into the Laptev Sea. About half of the eastward-propagating energy from the East Siberian Sea passes southward through Bering Strait, while one quarter is dissipated locally in the Chukchi Sea and another quarter passes eastward into the Beaufort Sea. Likewise, CSW generation in the Bering Sea can trigger elevation and current speed anomalies downstream in the Northeast Chukchi Sea of 25 cm and 20 cm s–1, respectively. Although each event is ephemeral, the large number of CSWs generated annually suggest that they represent a non-negligible source of time-averaged energy transport and bottom stress-induced dissipative mixing, particularly near the outer shelf and upper slope. Coastal water level and landfast ice breakout event forecasts should include CSW effects and associated lag times from distant upstream winds.

Description: Zooplankton organisms are a central part of pelagic ecosystems. They feed on all kinds of particulate matter and their egested fecal pellets contribute substantially to the passive sinking flux to depth. Some zooplankton species also conduct diel vertical migrations (DVMs) between the surface layer (where they feed at nighttime) and midwater depth (where they hide at daytime from predation). These DVMs cause the active export of organic and inorganic matter from the surface layer as zooplankton organisms excrete, defecate, respire, die, and are preyed upon at depth. In the Eastern Tropical North Atlantic (ETNA), the daytime distribution depth of many migrators (300–600 m) coincides with an expanding and intensifying oxygen minimum zone (OMZ). We here assess the day and night-time biomass distribution of mesozooplankton with an equivalent spherical diameter of 0.39–20 mm in three regions of the ETNA, calculate the DVM-mediated fluxes and compare these to particulate matter fluxes and other biogeochemical processes. Integrated mesozooplankton biomass in the ETNA region is about twice as high at a central OMZ location (cOMZ; 11° N, 21° W) compared to the Cape Verde Ocean Observatory (CVOO; 17.6° N, 24.3° W) and an oligotrophic location at 5° N, 23° W (5N). An Intermediate Particle Maximum (IPM) is particularly strong at cOMZ compared to the other regions. This IPM seems to be related to DVM activity. Zooplankton DVM was found to be responsible for about 31–41% of nitrogen loss from the upper 200m of the water column. Gut flux and mortality make up about 31% of particulate matter supply to the 300–600 m depth layer at cOMZ, whereas it makes up about 32% and 41% at CVOO and 5N, respectively. Resident and migrant zooplankton are responsible for about 7–27% of the total oxygen demand at 300–600 m depth. Changes in zooplankton abundance and migration behavior due to decreasing oxygen levels at midwater depth could therefore alter the elemental cycling of oxygen and carbon in the ETNA OMZ and impact the removal of nitrogen from the surface layer.

Description: Three-dimensional hydrogels of organic polymers have been suggested to affect a variety of processes in the ocean, including element cycling, microbial ecology, food-web dynamics, and air-sea exchange. However, their abundance and distribution in the ocean are hardly known, strongly limiting an assessment of their global significance. As a consequence, marine gels are often disregarded in biogeochemical or ecosystem models. Here, we demonstrate the widespread abundance of microgels in the ocean, from the surface to the deep sea. We exhibit size spectra of two major classes of marine gels, transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP) for three different ocean regimes: (a) Polar Seas, (b) Eastern Boundary Upwelling Systems, and (c) the oligotrophic open ocean. We show the variations of TEP and CSP over the water-column, and compare them to dissolved organic carbon (DOC). We also discuss how the observed distributional patterns inform about productivity and particle dynamics of these distinct oceanic regimes. Finally, we exploit current research topics, where consideration of microgels may give new insight into the role of organic matter for marine biogeochemical processes.

Description: The use of the silicon isotope composition of dissolved silicon (δ30Si-DSi) to understand the marine silicon cycle has been increasing in recent years. Here we present δ30Si-DSi and δ30Si of biogenic silica (δ30Si-bSiO2) in the intermediate to deep waters of the Central Arctic Ocean (AO) aiming at investigating in more detail the relative influence of water mass mixing and particle flux on the Si cycle in the AO. Comparing the δ30Si-DSi with the water mass composition derived from Optimum Multiparameter (OMP) analysis, we were able to test the influence of the water masses in the δ30Si-DSi distribution. We were able to show the dominant Atlantic Water (AW) influence at the stations close to the Fram Strait (station 32 and 40, δ30Si-DSi = 1.51 ± 0.11‰, 2SEM, n = 3) and the only small δ30Si-DSi modification when compared to the endmember value from a previous study (δ30Si-DSi = 1.55‰). The Dense Arctic Atlantic Water, dominating from 200 to 500 m water depth (except for stations 32 and 40, where it was present only at 500 m), was marked by heavier δ30Si-DSi of 1.62 ± 0.06‰ (2SEM, n = 21). This is probably due to the influence of entraining equally dense water from the shelves. Due to productivity and Si utilization on the shelves, both water and bSiO2, that were transported laterally into the Central AO, were characterized by higher δ30Si, with δ30Si-bSiO2 of 1.64 ± 0.13‰ (2SEM, n = 7). Particle dissolution at greater depths did not play a major role in the δ30Si-DSi of deep waters due to the low bSiO2 concentrations at these greater depths. Outflowing water masses from the AO present different δ30Si-DSi, with lower values around 1.46‰ originating from the Central AO influencing predominantly DSOW and ISOW, and higher values around 2‰ originating from the Canadian AO influencing predominantly LSW. Those signatures correspond with the δ30Si-DSi found in the North Atlantic. Consequently, the AO potentially presents several isotopically different endmembers that contribute to the deep water formed in the North Atlantic.

Description: Eastern Boundary Upwelling Ecosystems (EBUEs) are associated with high biological productivity, high fish catch and they highly contribute to marine carbon sequestration. Whether coastal upwelling has intensified or weakened under climate change in the past decades is controversially discussed and different approaches (e.g., time-series of chlorophyll, wind, sea surface temperature, modeling experiments) have been considered. We present a record of almost two decades of particle fluxes (1991–2009) from ca. 600 to 3100 m water depth in the Canary Basin at site ESTOC (European Station for Time series in the Ocean Canary Islands; ca. 29°N, 15°30.W, ca. 3600 m water depth), located in the offshore transition zone of the northern Canary Current-EBUE. We compare these flux records with those measured at a mesotrophic sediment trap site further south off Cape Blanc (Mauritania, ca. 21°N). The deep ocean fluxes at ESTOC in ca. 3 km recorded the evolution of the coastal Cape Ghir filament (30–32°N, 10–12°W) due to lateral advection of particles, whereas the upper water column sediment traps in ca. 1 km reflected the oligotrophic conditions in the overlying waters of ESTOC. We observed an increased emphasis in spring-time fluxes since 2005, associated with a change in particle composition, while satellite chlorophyll biomass did not show this pattern. Due to its northern location in the CC-EBUEs, spring biogenic fluxes at ESTOC provide a better relationship to the forcing of the North Atlantic Oscillation than those recorded further south off Cape Blanc. Off Cape Blanc, deep fluxes showed the best overlap with the deep ESTOC fluxes during the spring season before 2005. On the long-term, both chlorophyll and particle fluxes showed an increasing trend at ESTOC which was not observed further south at the mesotrophic Cape Blanc site. This might indicate that, depending on their location along the NW African margin, coastal upwelling systems react differently to global change.

Description: The 2015 Paris Agreement aims to strengthen the global response to climate change, and to maintain an average global temperature well below 2 °C, with aspirations towards 1.5 °C, by means of balancing sources and sinks of greenhouse gas emissions. Following this, the importance of carbon dioxide removal in global emission pathways has been further emphasized, and Negative Emissions Technologies (NETs) that capture carbon from the atmosphere and remove it from the system have been put in the spotlight. NETs range from innovative, engineered technologies, to well-known approaches like afforestation/reforestation. These technologies essentially compensate for a shrinking carbon budget coupled with hard-to-abate future emissions, and a historical lack of action. However, none has been deployed at scales close to what is envisioned in emission pathways in line with the Paris Agreement goals. To understand the potential contribution of NETs to meet global emission goals, we need to better understand opportunities and constraints for deploying NETs on a national level. We examine 17 Long-Term Low Greenhouse Gas Emission Development Strategies (LT-LEDS), and discuss them in the context of available NETs feasibility assessments. Our mapping shows that most countries include NETs in their long-term strategies, and that enhancement of natural sinks is the most dominating type of NET in these strategies. In line with many feasibility assessments, LT-LEDS focus on technical and biophysical considerations, and neglect socio-cultural dimensions. We suggest that feasibility assessments at the national level need to be more holistic; context-specific and comprehensive in terms of aspects assessed.

Description: The Protein Ensemble Database (PED) (https://proteinensemble.org), which holds structural ensembles of intrinsically disordered proteins (IDPs), has been significantly updated and upgraded since its last release in 2016. The new version, PED 4.0, has been completely redesigned and reimplemented with cutting-edge technology and now holds about six times more data (162 versus 24 entries and 242 versus 60 structural ensembles) and a broader representation of state of the art ensemble generation methods than the previous version. The database has a completely renewed graphical interface with an interactive feature viewer for region-based annotations, and provides a series of descriptors of the qualitative and quantitative properties of the ensembles. High quality of the data is guaranteed by a new submission process, which combines both automatic and manual evaluation steps. A team of biocurators integrate structured metadata describing the ensemble generation methodology, experimental constraints and conditions. A new search engine allows the user to build advanced queries and search all entry fields including cross-references to IDP-related resources such as DisProt, MobiDB, BMRB and SASBDB. We expect that the renewed PED will be useful for researchers interested in the atomic-level understanding of IDP function, and promote the rational, structure-based design of IDP-targeting drugs.

Description: Extragalactic studies have demonstrated that there is a moderately tight (≈0.3 dex) relationship between galaxy stellar mass (M⋆) and star formation rate (SFR) that holds for star-forming galaxies at M⋆ ∼ 3 × 108–1011 M⊙, i.e. the ‘star formation main sequence’. However, it has yet to be determined whether such a relationship extends to even lower mass galaxies, particularly at intermediate or higher redshifts. We present new results using observations for 714 narrow-band H α-selected galaxies with stellar masses between 106 and 1010 M⊙ (average of 108.2 M⊙) at z ≈ 0.07–0.5. These galaxies have sensitive ultraviolet (UV) to near-infrared photometric measurements and optical spectroscopy. The latter allows us to correct our H α SFRs for dust attenuation using Balmer decrements. Our study reveals that: (1) for low-SFR galaxies, our H α SFRs systematically underpredict compared to far-UV measurements, consistent with other studies; (2) at a given stellar mass (≈108 M⊙), log (specific SFR) evolves as A log (1 + z) with A = 5.26 ± 0.75, and on average, specific SFR increases with decreasing stellar mass; (3) the SFR–M⋆ relation holds for galaxies down to ∼106 M⊙ (∼1.5 dex below previous studies), and over lookback times of up to 5 Gyr, follows a redshift-dependent relation of log (SFR) ∝ α log (M⋆/M⊙) + β z with α = 0.60 ± 0.01 and β = 1.86 ± 0.07; and (4) the observed dispersion in the SFR–M⋆ relation at low stellar masses is ≈0.3 dex. Accounting for survey selection effects using simulated galaxies, we estimate that the true dispersion is ≈0.5 dex.

Description: The Earth’s magnetotail region provides a unique environment for the study of plasma turbulence. We investigate the turbulence developed in an exhaust produced by magnetic reconnection in the terrestrial magnetotail region. Magnetic and velocity spectra show broad-band fluctuations corresponding to the inertial range, with Kolmorogov scaling of −5/3, indicative of a well-developed turbulent cascade. We examine the mixed, third-order structure functions, and obtain a linear scaling in the inertial range. This linear scaling of the third-order structure functions implies a scale-invariant cascade of energy through the inertial range. A Politano–Pouquet third-order analysis gives an estimate of the incompressive energy transfer rate of ${sim}10^{7}~mathrm{J, kg^{-1}, s^{-1}}$. This is four orders of magnitude higher than the values typically measured in the 1-au solar wind, suggesting that the turbulence cascade plays an important role as a pathway of energy dissipation during reconnection events in the tail region.

Description: We present Bayesian active galactic nucleus (AGN) Decomposition Analysis for Sloan Digital Sky Survey (SDSS) Spectra, an open source spectral analysis code designed for automatic detailed deconvolution of AGN and host galaxy spectra, implemented in python, and designed for the next generation of large-scale surveys. The code simultaneously fits all spectral components, including power-law continuum, stellar line-of-sight velocity distribution, Fe ii emission, as well as forbidden (narrow), permitted (broad), and outflow emission line features, all performed using Markov chain Monte Carlo to obtain robust uncertainties and autocorrelation analysis to assess parameter convergence. Our code also utilizes multiprocessing for batch fitting large samples of spectra while efficiently managing memory and computation resources and is currently being used in a cluster environment to fit thousands of SDSS spectra. We use our code to perform a correlation analysis of 63 SDSS type 1 AGNs with evidence of strong non-gravitational outflow kinematics in the [O iii] λ5007 emission feature. We confirm findings from previous studies that show the core of the [O iii] profile is a suitable surrogate for stellar velocity dispersion σ*, however there is evidence that the core experiences broadening that scales with outflow velocity. We find sufficient evidence that σ*, [O iii] core dispersion, and the non-gravitational outflow dispersion of the [O iii] profile form a plane whose fit results in a scatter of ∼0.1 dex. Finally, we discuss the implications, caveats, and recommendations when using the [O iii] dispersion as a surrogate for σ* for the MBH−σ* relation.

Description: The splashback radius (Rsp) of dark matter haloes has recently been detected using weak gravitational lensing and cross-correlations with galaxies. However, different methods have been used to measure Rsp and to assess the significance of its detection. In this paper, we use simulations to study the precision and accuracy to which we can detect the splashback radius with 3D density, 3D subhalo, and weak lensing profiles. We study how well various methods and tracers recover Rsp by comparing it with the value measured directly from particle dynamics. We show that estimates of Rsp from density and subhalo profiles correspond to different percentiles of the underlying Rsp distribution of particle orbits. At low accretion rates, a second caustic appears and can bias results. Finally, we show that upcoming lensing surveys may be able to constrain the Rsp–Γdyn relation directly.

Description: Ecosystem-based Fisheries Management is a holistic management approach that integrates the dynamics of an entire ecosystem, including societal dimensions. However, this approach seldom lives up to its promise because economic and social objectives are rarely specified. To fill this gap, we explored how an ecosystem model could better integrate economic and social objectives, using the coral reef ecosystem around Hawai`i as a case study. After meeting with stakeholders and conducting a literature review of policy/strategy documents, we identified societal and ecological objectives and associated performance indicators for which data existed. We developed a social–ecological system conceptual framework to illustrate the relationships between ecological and social state components. This framework was the foundation for the development of the final social–ecological system model which we simulated using an Ecopath with Ecosim model. We simulated four gear/species restrictions for the reef-based fishery, two fishing scenarios associated with the opening of hypothetical no-take Marine Protected Areas for the deepwater-based fishery, and a Constant Effort (No Action) scenario. Despite limitations in the model, our approach shows that when social and economic objectives and social–ecological relationships are defined, we can quantify the trade-offs among the identified societal objectives to support managers in choosing among alternative interventions.

Description: We present the conditional H i (neutral hydrogen) mass function (HIMF) conditioned on observed optical properties, Mr (r-band absolute magnitude), and Cur (u − r colour), for a sample of 7709 galaxies from Arecibo Legacy Fast ALFA (40 per cent data release – α.40) which overlaps with a common volume in SDSS DR7. Based on the conditional HIMF, we find that the luminous red, luminous blue, and faint blue populations dominate the total HIMF at the high-mass end, knee, and the low-mass end, respectively. We use the conditional HIMF to derive the underlying distribution function of ΩH i (H i density parameter), p(ΩH i), in the colour–magnitude plane of galaxies. The distribution, p(ΩH i), peaks in the blue cloud at $mathit{ M_{{r}}}^{ext{max}}=-19.25, mathit{ C_{{ur}}}^{ext{max}}=1.44$ but is skewed. It has a long tail towards faint blue galaxies, and luminous red galaxies. We argue that p(ΩH i) can be used to reveal the underlying relation between cold gas, stellar mass, and the star formation rate in an unbiased way, that is, the derived relation does not suffer from survey or sample selection.

Description: We present a deep XMM−Newton observation of the extremely massive, rapidly rotating, relativistic-jet-launching spiral galaxy 2MASX J23453268−0449256. Diffuse X-ray emission from the hot gaseous halo around the galaxy is robustly detected out to a radius of 160 kpc, corresponding roughly to 35 per cent of the virial radius (≈450 kpc). We fit the X-ray emission with the standard isothermal β model, and it is found that the enclosed gas mass within 160 kpc is $1.15_{-0.24}^{+0.22} imes 10^{11} , m {M}_{odot }$. Extrapolating the gas mass profile out to the virial radius, the estimated gas mass is $8.25_{-1.77}^{+1.62} imes 10^{11} , m {M}_{odot }$, which makes up roughly 65 per cent of the total baryon mass content of the galaxy. When the stellar mass is considered and accounting for the statistical and systematic uncertainties, the baryon mass fraction within the virial radius is $0.121_{-0.043}^{+0.043}$, in agreement with the universal baryon fraction. The baryon mass fraction is consistent with all baryons falling within r200, or with only half of the baryons falling within r200. Similar to the massive spiral galaxies NGC 1961 and NGC 6753, we find a low value for the metal abundance of ≈ 0.1 Z⊙, which appears uniform with radius. We also detect diffuse X-ray emission associated with the northern and southern lobes, possibly attributed to inverse Compton scattering of cosmic microwave background photons. The estimated energy densities of the electrons and magnetic field in these radio lobes suggest that they are electron-dominated by a factor of 10−200, depending on the choice of the lower cut-off energy of the electron spectrum.

Description: We report the results from a detailed timing and spectral study of a transient X-ray pulsar, 4U 1901+03 during its 2019 outburst. We performed broadband spectroscopy in the 1–70 $ m keV$ energy band using four observations made with Swift and NuSTAR at different intensity levels. Our timing results reveal the presence of highly variable pulse profiles dependent on both luminosity and energy. Our spectroscopy results showed the presence of a cyclotron resonance scattering feature (CRSF) at ∼ 30 keV. This feature at 30 keV is highly luminosity and pulse phase dependent. Phase-averaged spectra during the last two observations, made close to the declining phase of the outburst, showed the presence of this feature at around $30~ m {keV}$. The existence of CRSF at 30 keV during these observations is well supported by an abrupt change in the shape of pulse profiles found close to this energy. We also found that 30 keV feature was significantly detected in the pulse phase-resolved spectra of observations made at relatively high luminosities. Moreover, all spectral fit parameters showed a strong pulse phase dependence. In line with the previous findings, an absorption feature at around $10~ m {keV}$ is significantly observed in the phase-averaged X-ray spectra of all observations and also showed a strong pulse phase dependence.

Description: We provide an empirical list of the Galactic dispersion measure (DMGal) contribution to the extragalactic fast radio bursts (FRBs) along 72 sightlines. It is independent of any model of the Galaxy, i.e. we do not assume the density of the disc or the halo, spatial extent of the halo, baryonic mass content, or any such external constraints to measure DMGal. We use 21-cm, UV, EUV, and X-ray data to account for different phases, and find that DMGal is dominated by the hot phase probed by X-ray absorption. We improve upon the measurements of N($ m{O},{small VII}$) and f$_{ m O,{small VII}}$ compared to previous studies, thus providing a better estimate of the hot phase contribution. The median DMGal = 64$^{+20}_{-23}$ cm−3 pc, with a 68 per cent (90 per cent) confidence interval of 33–172 (23–660) cm−3 pc. The DMGal does not appear to follow any trend with the Galactic longitude or latitude, and there is a large scatter around the values predicted by simple disc + spherical halo models. Our measurements provide more complete and accurate estimates of DMGal independent from the previous studies. We provide a table and a code to retrieve DMGal for any FRB localized in the sky.

Description: Enabling efficient injection of light into single-mode fibres (SMFs) is a key requirement in realizing diffraction-limited astronomical spectroscopy on ground-based telescopes. SMF-fed spectrographs, facilitated by the use of adaptive optics (AO), offer distinct advantages over comparable seeing-limited designs, including higher spectral resolution within a compact and stable instrument volume, and a telescope independent spectrograph design. iLocater is an extremely precise radial velocity (EPRV) spectrograph being built for the Large Binocular Telescope (LBT). We have designed and built the front-end fibre injection system, or acquisition camera, for the SX (left) primary mirror of the LBT. The instrument was installed in 2019 and underwent on-sky commissioning and performance assessment. In this paper, we present the instrument requirements, acquisition camera design, as well as results from first-light measurements. Broad-band SMF coupling in excess of 35 per cent (absolute) in the near-infrared (0.97–1.31 ${mu { m m}}$) was achieved across a range of target magnitudes, spectral types, and observing conditions. Successful demonstration of on-sky performance represents both a major milestone in the development of iLocater and in making efficient ground-based SMF-fed astronomical instruments a reality.

Description: Separating galactic foreground emission from maps of the cosmic microwave background (CMB) and quantifying the uncertainty in the CMB maps due to errors in foreground separation are important for avoiding biases in scientific conclusions. Our ability to quantify such uncertainty is limited by our lack of a model for the statistical distribution of the foreground emission. Here, we use a deep convolutional generative adversarial network (DCGAN) to create an effective non-Gaussian statistical model for intensity of emission by interstellar dust. For training data we use a set of dust maps inferred from observations by the Planck satellite. A DCGAN is uniquely suited for such unsupervised learning tasks as it can learn to model a complex non-Gaussian distribution directly from examples. We then use these simulations to train a second neural network to estimate the underlying CMB signal from dust-contaminated maps. We discuss other potential uses for the trained DCGAN, and the generalization to polarized emission from both dust and synchrotron.

Description: In the cold neutral medium, high out-of-equilibrium temperatures are created by intermittent dissipation processes, including shocks, viscous heating, and ambipolar diffusion. The high-temperature excursions are thought to explain the enhanced abundance of CH+ observed along diffuse molecular sightlines. Intermittent high temperatures should also have an impact on H2 line luminosities. We carry out simulations of magnetohydrodynamic (MHD) turbulence in molecular clouds including heating and cooling, and post-process them to study H2 line emission and hot-gas chemistry, particularly the formation of CH+. We explore multiple magnetic field strengths and equations of state. We use a new H2 cooling function for $n_{ext{H}}le 10^5, {ext{cm}}^{-3}$, $Tle 5000, {ext{K}}$, and variable H2 fraction. We make two important simplifying assumptions: (i) the H2/H fraction is fixed everywhere and (ii) we exclude from our analysis regions where the ion–neutral drift velocity is calculated to be greater than 5 km s−1. Our models produce H2 emission lines in accord with many observations, although extra excitation mechanisms are required in some clouds. For realistic root-mean-square (rms) magnetic field strengths (≈10 μG) and velocity dispersions, we reproduce observed CH+ abundances. These findings contrast with those of Valdivia et al. (2017) Comparison of predicted dust polarization with observations by Planck suggests that the mean field is ≳5 µG, so that the turbulence is sub-Alfvénic. We recommend future work treating ions and neutrals as separate fluids to more accurately capture the effects of ambipolar diffusion on CH+ abundance.

Description: Long-period variability in luminous red giants has several promising applications, all of which require models able to accurately predict pulsation periods. Linear pulsation models have proven successful in reproducing the observed periods of overtone modes in evolved red giants, but they fail to accurately predict their fundamental mode (FM) periods. Here, we use a 1D hydrodynamic code to investigate the long-period variability of M-type asymptotic giant branch stars in the non-linear regime. We examine the period and stability of low-order radial pulsation modes as a function of mass and radius, and find overtone mode periods in complete agreement with predictions from linear pulsation models. In contrast, non-linear models predict an earlier onset of dominant FM pulsation, and shorter periods at large radii. Both features lead to a substantially better agreement with observations that we verify against OGLE and Gaia data for the Magellanic Clouds. We provide simple analytical relations describing the non-linear FM period–mass–radius relation. Differences with respect to linear predictions originate from the readjustment of the envelope structure induced by large-amplitude pulsation. We investigate the impact of turbulent viscosity on linear and non-linear pulsation, and probe possible effects of varying metallicity and carbon abundance.

Description: X-ray observations of shocked gas in novae can provide a useful probe of the dynamics of the ejecta. Here we report on X-ray observations of the nova V959 Mon, which was also detected in GeV gamma-rays with the Fermi satellite. We find that the X-ray spectra are consistent with a two-temperature plasma model with non-solar abundances. We interpret the X-rays as due to shock interaction between the slow equatorial torus and the fast polar outflow that were inferred from radio observations of V959 Mon. We further propose that the hotter component, responsible for most of the flux, is from the reverse shock driven into the fast outflow. We find a systematic drop in the column density of the absorber between days 60 and 140, consistent with the expectations for such a picture. We present intriguing evidence for a delay of around 40 d in the expulsion of the ejecta from the central binary. Moreover, we infer a relatively small (a few times 10−6 M⊙) ejecta mass ahead of the shock, considerably lower than the mass of 104 K gas inferred from radio observations. Finally, we infer that the dominant X-ray shock was likely not radiative at the time of our observations, and that the shock power was considerably higher than the observed X-ray luminosity. It is unclear why high X-ray luminosity, closer to the inferred shock power, is never seen in novae at early times, when the shock is expected to have high enough density to be radiative.

Description: Fundamental Plane (FP) of elliptical galaxies can be used to predict the intrinsic size of galaxies and has a number of plausible application to study cosmology and galaxy physics. We present a detailed analysis of the FP of the SDSS-III BOSS LOWZ and CMASS galaxies. For the standard FP, we find a strong redshift evolution for the mean residual and show that it is primarily driven by the redshift evolution of the surface brightness of the galaxies. After correcting for the redshift evolution, the FP residuals are strongly correlated with the galaxy properties and some observational systematics. We show that the variations in the FP between the central and satellite galaxies, which have been observed in the literature, can primarily be explained by the correlation of the FP with the galaxy luminosity. We also measure the cross-correlations of the FP residuals with the galaxy density field. The amplitude of the cross-correlations depends on the galaxy properties and environment with brighter and redder galaxies showing stronger correlation. In general, galaxies in denser environments (higher galaxy bias) show stronger correlations. We also compare FP amplitude with the amplitudes of intrinsic alignments (IA) of galaxy shapes, finding the two to be correlated. Finally, using the FP residuals, we also study the impact of IA on the constraint of growth rate using redshift-space distortions (RSD). We do not observe any significant trends in measurements of the growth rate f as function of the amplitude of FP–density correlations, resulting in null detection of the effects of IA on the RSD measurements.

Description: The Oef category gathers rapidly rotating and evolved O-stars displaying a centrally reversed He ii λ 4686 emission line. The origin of the variability of their photospheric and wind spectral lines is debated, with rotational modulation or pulsations as the main contenders. To shed new light on this question, we analysed high-quality and high-cadence Transiting Exoplanet Survey Satellite photometric time series for five Oef stars. We also collected a new time series of spectra for one target (λ Cep) which had been the subject of specific debates in the last years. These observations reveal the variety of Oef behaviours. While space-based photometric data reveal substantial red noise components in all targets, only ζ Pup seems to display a long-lived periodicity. In our sample, stars exhibit a dominant signal at low frequencies but it appears relatively short-lived. This is reminiscent of rotational modulations by transient photospheric spots, though this scenario is challenged by the case of HD 14 442, whose 1.230 d−1 signal significantly exceeds the critical rotational frequency. In parallel, no evidence of persistent p mode non-radial pulsations is found in either photometry or spectroscopy of the stars, only temporary excitation of g mode pulsations could offer an alternative explanation for the dominant signals. Finally, the revised luminosities of the stars using GAIA-DR2 show that they are not all supergiants as ζ Pup. The question then arises whether the Oef peculiarity denotes a homogeneous class of objects after all.

Description: EPIC 216747137 is a new HW Virginis system discovered by the Kepler spacecraft during its K2 ‘second life’. Like the other HW Vir systems, EPIC 216747137 is a post-common-envelope eclipsing binary consisting of a hot subluminous star and a cool low-mass companion. The short orbital period of 3.87 h produces a strong reflection effect from the secondary (∼9 per cent in the R band). Together with AA Dor and V1828 Aql, EPIC 216747137 belongs to a small subgroup of HW Vir systems with a hot evolved sdOB primary. We find the following atmospheric parameters for the hot component: Teff = 40400 ± 1000 K, log g = 5.56 ± 0.06, and log(N(He)/N(H)) = −2.59 ± 0.05. The sdOB rotational velocity v sin  i = 51 ± 10 km s−1 implies that the stellar rotation is slower than the orbital revolution and the system is not synchronized. When we combine photometric and spectroscopic results with the Gaia parallax, the best solution for the system corresponds to a primary with a mass of about 0.62 M⊙ close to, and likely beyond, the central helium exhaustion, while the cool M-dwarf companion has a mass of about 0.11 M⊙.

Description: The two established techniques for measuring black hole spin in X-ray binaries often yield conflicting results, which must be resolved before either method may be deemed robust. In practice, black hole spin measurements based on fitting the accretion disc continuum effectively do not marginalize over the colour-correction factor fcol. This factor parametrizes spectral hardening of the disc continuum by the disc atmosphere, whose true properties are poorly constrained. We incorporate reasonable systematic uncertainties in fcol into the eight (non-maximal) black hole spin measurements vetted by the disc continuum fitting community. In most cases, an fcol uncertainty of ±0.2–0.3 dominates the black hole spin error budget. We go on to demonstrate that plausible departures in fcol values from those adopted by the disc continuum fitting practitioners can bring the discrepant black hole spins into agreement with those from iron line modelling. Systematic uncertainties in fcol, such as the effects of strong magnetization, should be better understood before dismissing their potentially dominant impact on the black hole spin error budget.

Description: We present the spectrum analysis of the hot Am star HR 3383 (A1 Vm). Hubble Space Telescope STIS and Nordic Optical Telescope SOFIN data are modelled with synthetic spectra, and abundances are investigated for 78 elements. Most light elements up through oxygen show deficiencies, compared to solar abundances, followed by the general trend of increasing abundance enhancement with atomic number that levels off at a 30-fold enhancement at the lanthanide group and heavier elements. The derived element distribution is generally consistent with what is observed in other hot Am stars. Abundances for HR 3383 are also similar to what is seen for the cooler HgMn stars, with the exception of the platinum-group elements that generally show dramatic enhancements in the HgMn stars. Current theory and calculations are able to predict most observed abundances and abundance trends through the iron group. The large number of derived element abundances in this study provides a constraint for theoretical calculations attempting to explain the heavy element abundances in chemically peculiar stars. This paper includes a comprehensive description of spectral lines useful for an abundance analysis of late B and A type stars, and comments are provided on the atomic data. New data for hyperfine structure components for three lines in Lu iii and a single line in Lu ii are presented, based on laboratory spectra. In addition to the stellar spectrum, lines from the interstellar medium are noted for several of the strongest Fe ii ultraviolet transitions.

Description: In Pop III stellar models, convection-induced mixing between H- and He-rich burning layers can induce a burst of nuclear energy and thereby substantially alter the subsequent evolution and nucleosynthesis in the first massive stars. We investigate H–He shell and core interactions in 26 stellar evolution simulations with masses 15–140, M⊙, using five sets of mixing assumptions. In 22 cases H–He interactions induce local nuclear energy release in the range $sim 10^{9}!-!10^{13.5}, mathrm{L}_{odot }$. The luminosities on the upper end of this range amount to a substantial fraction of the layer’s internal energy over a convective advection time-scale, indicating a dynamic stellar response that would violate 1D stellar evolution modelling assumptions. We distinguish four types of H–He interactions depending on the evolutionary phase and convective stability of the He-rich material. H-burning conditions during H–He interactions give 12C/13C ratios between ≈ 1.5 to ∼1000 and [C/N] ratios from ≈ −2.3 to ≈ 3 with a correlation that agrees well with observations of CEMP (carbon-enhanced metal-poor) no stars. We also explore Ca production from hot CNO breakout and find the simulations presented here likely cannot explain the observed Ca abundance in the most Ca-poor CEMP-no star. We describe the evolution leading to H–He interactions, which occur during or shortly after core-contraction phases. Three simulations without an H–He interaction are computed to Fe-core infall and a $140, mathrm{M}_{odot }$ simulation becomes pair unstable. We also discuss present modelling limitations and the need for 3D hydrodynamic models to fully understand these stellar evolutionary phases.

Description: Observations of ultraviolet (UV) metal absorption lines have provided insight into the structure and composition of the circumgalactic medium (CGM) around galaxies. We compare these observations with the low-redshift (z ≤ 0.3) CGM around dwarf galaxies in high-resolution cosmological zoom-in runs in the FIRE-2 (Feedback In Realistic Environments) simulation suite. We select simulated galaxies that match the halo mass, stellar mass, and redshift of the observed samples. We produce absorption measurements using trident for UV transitions of C iv, O vi, Mg ii, and Si iii. The FIRE equivalent width (EW) distributions and covering fractions for the C iv ion are broadly consistent with observations inside 0.5Rvir, but are underpredicted for O vi, Mg ii, and Si iii. The absorption strengths of the ions in the CGM are moderately correlated with the masses and star formation activity of the galaxies. The correlation strengths increase with the ionization potential of the ions. The structure and composition of the gas from the simulations exhibit three zones around dwarf galaxies characterized by distinct ion column densities: the discy interstellar medium, the inner CGM (the wind-dominated regime), and the outer CGM (the IGM accretion-dominated regime). We find that the outer CGM in the simulations is nearly but not quite supported by thermal pressure, so it is not in hydrostatic equilibrium, resulting in halo-scale bulk inflow and outflow motions. The net gas inflow rates are comparable to the star formation rate of the galaxy, but the bulk inflow and outflow rates are greater by an order of magnitude, with velocities comparable to the virial velocity of the halo. These roughly virial velocities (${sim } 100 , m km, s^{-1}$) produce large EWs in the simulations. This supports a picture for dwarf galaxies in which the dynamics of the CGM at large scales are coupled to the small-scale star formation activity near the centre of their haloes.

Description: We present correlations involving central intensity ratio (CIR) of 52 early-type galaxies, including 24 ellipticals and 28 lenticulars, selected from low-density environment in the nearby (

Description: Past Suzaku, XMM–Newton, and NuSTAR observations of the nearby (z = 0.03233) bright Seyfert 2 galaxy MCG-03-58-007 revealed the presence of two deep and blue-shifted iron K-shell absorption line profiles. These could be explained with the presence of two phases of a highly ionized, high column density accretion disc wind outflowing with vout1 ∼ −0.1c and vout2 ∼ −0.2c. Here we present two new observations of MCG-03-58-007: one was carried out in 2016 with Chandra and one in 2018 with Swift. Both caught MCG-03-58-007 in a brighter state ($F_{{mathrm{2}-10, keV}} sim 4 imes 10^{-12}$ erg cm−2 s−1) confirming the presence of the fast disc wind. The multi-epoch observations of MCG-03-58-007 covering the period from 2010 to 2018 were then analysed. These data show that the lower velocity component outflowing with vout1 ∼ −0.072 ± 0.002c is persistent and detected in all the observations, although it is variable in column density in the range NH ∼ 3–8 × 1023 cm−2. In the 2016 Swift observation we detected again the second faster component outflowing with vout2 ∼ −0.2c, with a column density ($N_{mbox{H}}=7.0^{+5.6}_{-4.1}imes 10^{23}$ cm−2), similar to that seen during the Suzaku observation. However during the Chandra observation 2 yr earlier, this zone was not present (NH 〈 1.5 × 1023 cm−2), suggesting that this faster zone is intermittent. Overall the multi-epochs observations show that the disc wind in MCG-03-58-007 is not only powerful, but also extremely variable, hence placing MCG-03-58-007 among unique disc winds such as the one seen in the famous QSO PDS456. One of the main results of this investigation is the consideration that these winds could be extremely variable, sometime appearing and sometime disappearing; thus to reach solid and firm conclusions about their energetics multiple observations are mandatory.

Description: We report the result of searching for globular clusters (GCs) around 55 Milky Way (MW) satellite dwarf galaxies within the distance of 450 kpc from the Galactic Centre except for the Large and Small Magellanic Clouds and the Sagittarius dwarf. For each dwarf, we analyse the stellar distribution of sources in Gaia DR2, selected by magnitude, proper motion, and source morphology. Using the kernel density estimation of stellar number counts, we identify 11 possible GC candidates. Cross-matched with existing imaging data, all 11 objects are known either GCs or galaxies and only Fornax GC 1–6 among them are associated with the targeted dwarf galaxy. Using simulated GCs, we calculate the GC detection limit $M_{ m V}^{ m lim}$ that spans the range from $M_{ m V}^{ m lim}sim -7$ for distant dwarfs to $M_{ m V}^{ m lim}sim 0$ for nearby systems. Assuming a Gaussian GC luminosity function, we compute that the completeness of the GC search is above 90 per cent for most dwarf galaxies. We construct the 90 per cent credible intervals/upper limits on the GC specific frequency SN of the MW dwarf galaxies: 12 〈 SN 〈 47 for Fornax, SN 〈 20 for the dwarfs with −12 〈 MV 〈 −10, SN 〈 30 for the dwarfs with −10 〈 MV 〈 −7, and SN 〈 90 for the dwarfs with MV 〉 −7. Based on SN, we derive the probability of galaxies hosting GCs given their luminosity, finding that the probability of galaxies fainter than MV = −9 to host GCs is lower than 0.1.

Description: We present the analysis of archival Very Large Telescope (VLT) Multi-Unit Spectroscopic Explorer (MUSE) observations of the interacting galaxies NGC 4038/39 (a.k.a. the Antennae) at a distance of 18.1 Mpc. Up to 38 young star-forming complexes with evident contribution from Wolf–Rayet (WR) stars are unveiled. We use publicly available templates of Galactic WR stars in conjunction with available photometric extinction measurements to quantify and classify the WR population in each star-forming region, on the basis of its nearly Solar oxygen abundance. The total estimated number of WR stars in the Antennae is 4053 ± 84, of which there are 2021 ± 60 WNL and 2032 ± 59 WC-types. Our analysis suggests a global WC to WN-type ratio of 1.01 ± 0.04, which is consistent with the predictions of the single star evolutionary scenario in the most recent bpass stellar population synthesis models.

Description: Motivation As genomic data becomes more abundant, efficient algorithms and data structures for sequence alignment become increasingly important. The suffix array is a widely used data structure to accelerate alignment, but the binary search algorithm used to query, it requires widespread memory accesses, causing a large number of cache misses on large datasets. Results Here, we present Sapling, an algorithm for sequence alignment, which uses a learned data model to augment the suffix array and enable faster queries. We investigate different types of data models, providing an analysis of different neural network models as well as providing an open-source aligner with a compact, practical piecewise linear model. We show that Sapling outperforms both an optimized binary search approach and multiple widely used read aligners on a diverse collection of genomes, including human, bacteria and plants, speeding up the algorithm by more than a factor of two while adding

Description: The origin of fast radio bursts (FRBs) still remains a mystery, even with the increased number of discoveries in the last 3 yr. Growing evidence suggests that some FRBs may originate from magnetars. Large, single-dish telescopes such as Arecibo Observatory (AO) and Green Bank Telescope (GBT) have the sensitivity to detect FRB 121102-like bursts at gigaparsec distances. Here, we present searches using AO and GBT that aimed to find potential radio bursts at 11 sites of past gamma-ray bursts that show evidence for the birth of a magnetar. We also performed a search towards GW170817, which has a merger remnant whose nature remains uncertain. We place $10sigma$ fluence upper limits of ≈0.036 Jy ms at 1.4 GHz and ≈0.063 Jy ms at 4.5 GHz for the AO data and fluence upper limits of ≈0.085 Jy ms at 1.4 GHz and ≈0.098 Jy ms at 1.9 GHz for the GBT data, for a maximum pulse width of ≈42 ms. The AO observations had sufficient sensitivity to detect any FRB of similar luminosity to the one recently detected from the Galactic magnetar SGR 1935+2154. Assuming a Schechter function for the luminosity function of FRBs, we find that our non-detections favour a steep power-law index (α ≲ −1.1) and a large cut-off luminosity (L0 ≳ 1041 erg s−1).

Description: We present the Emission Line Galaxy (ELG) sample of the extended Baryon Oscillation Spectroscopic Survey from the Sloan Digital Sky Survey IV Data Release 16. We describe the observations and redshift measurement for the 269 243 observed ELG spectra, and then present the large-scale structure catalogues, used for the cosmological analysis, and made of 173 736 reliable spectroscopic redshifts between 0.6 and 1.1. We perform a spherically averaged baryon acoustic oscillations (BAO) measurement in configuration space, with density field reconstruction: the data two-point correlation function shows a feature consistent with that of the BAO, the BAO model being only weakly preferred over a model without BAO (Δχ2 〈 1). Fitting a model constrained to have a BAO feature provides a 3.2 per cent measurement of the spherically averaged BAO distance DV(zeff)/rdrag = 18.23 ± 0.58 at the effective redshift zeff = 0.845.

Description: New Swift monitoring observations of the variable, radio-quiet quasar, PDS 456, are presented. A bright X-ray flare was captured in 2018 September, the flux increasing by a factor of 4 and with a doubling time-scale of 2 d. From the light crossing argument, the coronal size is inferred to be ≲30 gravitational radii for a black hole mass of 109 M⊙ and the total flare energy exceeds 1051 erg. A hardening of the X-ray emission accompanied the flare, with the photon index decreasing from Γ = 2.2 to Γ = 1.7 and back again. The flare is produced in the X-ray corona, the lack of any optical or UV variability being consistent with a constant accretion rate. Simultaneous XMM–Newton and NuSTAR observations were performed, 1–3 d after the flare peak and during the decline phase. These caught PDS 456 in a bright, bare state, where no disc wind absorption features are apparent. The hard X-ray spectrum shows a high energy roll-over, with an e-folding energy of $E_{ m fold}=51^{+11}_{-8}$ keV. The deduced coronal temperature, of kT = 13 keV, is one of the coolest measured in any AGN and PDS 456 lies well below the predicted pair annihilation line in X-ray corona. The spectral variability, becoming softer when fainter following the flare, is consistent with models of cooling X-ray coronae. Alternatively, an increase in a non-thermal component could contribute towards the hard X-ray flare spectrum.

Description: Massive galaxy clusters undergo strong evolution from z ∼ 1.6 to z ∼ 0.5, with overdense environments at high-z characterized by abundant dust-obscured star formation and stellar mass growth which rapidly give way to widespread quenching. Data spanning the near- to far-infrared (IR) can directly trace this transformation; however, such studies have largely been limited to the massive galaxy end of cluster populations. In this work, we present ‘total light’ stacking techniques spanning $3.4!-!500, mu$m aimed at revealing the total cluster emission, including low-mass members and potential intracluster dust. We detail our procedures for WISE, Spitzer, and Herschel imaging, including corrections to recover the total stacked emission in the case of high fractions of detected galaxies. We apply our techniques to 232 well-studied log$, M_{200}/mathrm{M}_{odot }sim 13.8$ clusters in multiple redshift bins, recovering extended cluster emission at all wavelengths. We measure the averaged IR radial profiles and spectral energy distributions (SEDs), quantifying the total stellar and dust content. The near-IR profiles are well described by an NFW model with a high (c ∼ 7) concentration. Dust emission is similarly concentrated, albeit suppressed at $rlesssim 0.3,$Mpc. The measured SEDs lack warm dust, consistent with the colder SEDs of low-mass galaxies. We derive total stellar masses consistent with the theoretical Mhalo−M⋆ relation and specific star formation rates that evolve strongly with redshift, echoing that of log$, M_{star }/mathrm{M}_{odot }gtrsim 10$ cluster galaxies. Separating out the massive population reveals the majority of cluster far-IR emission ($sim 70!-!80{{ m per cent}}$) is provided by the low-mass constituents, which differs from field galaxies. This effect may be a combination of mass-dependent quenching and excess dust in low-mass cluster galaxies.

Description: HD 38206 is an A0V star in the Columba association, hosting a debris disc first discovered by IRAS. Further observations by Spitzer and Herschel showed that the disc has two components, likely analogous to the asteroid and Kuiper belts of the Solar system. The young age of this star makes it a prime target for direct imaging planet searches. Possible planets in the system can be constrained using the debris disc. Here, we present the first ALMA observations of the system’s Kuiper belt and fit them using a forward modelling MCMC approach. We detect an extended disc of dust peaking at around 180 au with a width of 140 au. The disc is close to edge on and shows tentative signs of an asymmetry best fit by an eccentricity of $0.25^{+0.10}_{-0.09}$. We use the fitted parameters to determine limits on the masses of planets interior to the cold belt. We determine that a minimum of four planets are required, each with a minimum mass of 0.64 MJ, in order to clear the gap between the asteroid and Kuiper belts of the system. If we make the assumption that the outermost planet is responsible for the stirring of the disc, the location of its inner edge and the eccentricity of the disc, then we can more tightly predict its eccentricity, mass, and semimajor axis to be $e_{ m {p}}=0.34^{+0.20}_{-0.13}$, $m_{ m {p}}=0.7^{+0.5}_{-0.3}, m {it M}_{ m {J}}$, and $a_{ m {p}}=76^{+12}_{-13}, m {au}$.