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  • 1
    Publication Date: 2023-12-06
    Description: Highlights: • Inhibitory potential of eelgrass microbiome against aquatic and fecal pathogens • Isolation of epiphytes and endophytes associated with eelgrass leaves and roots • Particularly leaf epibiotic bacteria exhibit significant antimicrobial activity. • Rich secondary metabolite composition by untargeted metabolomics • Potential involvement of eelgrass microbiome in seagrass ecosystem services Seagrass meadows provide crucial ecosystem services for coastal environments and were shown to reduce the abundance of waterborne pathogens linked to infections in humans and marine organisms in their vicinity. Among potential drivers, seagrass phenolics released into seawater have been linked to pathogen suppression, but the potential involvement of the seagrass microbiome has not been investigated. We hypothesized that the microbiome of the eelgrass Zostera marina, especially the leaf epiphytes that are at direct interface between the seagrass host and the surrounding seawater, inhibit waterborne pathogens thereby contributing to their removal. Using a culture-dependent approach, we isolated 88 bacteria and fungi associated with the surfaces and inner tissues of the eelgrass leaves (healthy and decaying) and the roots. We assessed the antibiotic activity of microbial extracts against a large panel of common aquatic, human (fecal) and plant pathogens, and mined the metabolome of the most active extracts. The healthy leaf epibiotic bacteria, particularly Streptomyces sp. strain 131, displayed broad-spectrum antibiotic activity superior to some control drugs. Gram-negative bacteria abundant on healthy leaf surfaces, and few endosphere-associated bacteria and fungi also displayed remarkable activities. UPLC-MS/MS-based untargeted metabolomics analyses showed rich specialized metabolite repertoires with low annotation rates, indicating the presence of many undescribed antimicrobials in the extracts. This study contributes to our understanding on microbial and chemical ecology of seagrasses, implying potential involvement of the seagrass microbiome in suppression of pathogens in seawater. Such effect is beneficial for the health of ocean and human, especially in the context of climate change that is expected to exacerbate all infectious diseases. It may also assist future seagrass conservation and management strategies.
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  • 2
    Publication Date: 2023-11-21
    Description: The world's forests store large amounts of carbon (C), and growing forests can reduce atmospheric CO2 by storing C in their biomass. This has provided the impetus for world-wide tree planting initiatives to offset fossil-fuel emissions. However, forests interact with their environment in complex and multifaceted ways that must be considered for a balanced assessment of the value of planting trees. First, one needs to consider the potential reversibility of C sequestration in trees through either harvesting or tree death from natural factors. If carbon storage is only temporary, future temperatures will actually be higher than without tree plantings, but cumulative warming will be reduced, contributing both positively and negatively to future climate-change impacts. Alternatively, forests could be used for bioenergy or wood products to replace fossil-fuel use which would obviate the need to consider the possible reversibility of any benefits. Forests also affect the Earth's energy balance through either absorbing or reflecting incoming solar radiation. As forests generally absorb more incoming radiation than bare ground or grasslands, this constitutes an important warming effect that substantially reduces the benefit of C storage, especially in snow-covered regions. Forests also affect other local ecosystem services, such as conserving biodiversity, modifying water and nutrient cycles, and preventing erosion that could be either beneficial or harmful depending on specific circumstances. Considering all these factors, tree plantings may be beneficial or detrimental for mitigating climate-change impacts, but the range of possibilities makes generalisations difficult. Their net benefit depends on many factors that differ between specific circumstances. One can, therefore, neither uncritically endorse tree planting everywhere, nor condemn it as counter-productive. Our aim is to provide key information to enable appropriate assessments to be made under specific circumstances. We conclude our discussion by providing a step-by-step guide for assessing the merit of tree plantings under specific circumstances.
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  • 3
    Publication Date: 2023-11-29
    Description: Seaweed farming contributes substantial amounts of organic carbon to the ocean, part of which can be locked for a long term in the ocean and perform the function of ocean carbon sequestration, and the other part can be converted into inorganic carbon through microbial mineralization and aerobic respiration, affecting the pCO2, pHT and dissolved oxygen of seawater. It is generally believed that seaweed farming will cause the seawater to become a sink of CO2 due to carbon fixation by macroalgal photosynthesis. However, little attention has been paid to the fact that seaweed farming environment may sometimes become a source rather than a sink of CO2. Here, through in-situ mesocosm cultivation experiments and eight field investigations covering different kelp growth stages in an intensive farming area in China, we found that compared with the surrounding seawater without kelps, the seawater at the fast-growth stage of kelp was a sink of CO2 (pCO2 decreased by 17−73 μatm), but became a source of CO2 at the aging stage of kelp (pCO2 increased by 20−37 μatm). Concurrently, seawater pHT experienced a transition from increase (by 0.02−0.08) to decline (by 0.03−0.04). In-situ mesocosm cultivation experiments showed that the positive environmental effects (i.e., pCO2 decrease and pHT increase) induced by kelps at the early growth stage could be offset within only 3 days at the late-growth and aging stages. The release of dissolved organic carbon by kelps at the late growth stage increased significantly, supporting the enhancement in microbial abundance and respiration, which was manifested by the remarkable decrease in seawater dissolved oxygen, ultimately leading to CO2 release exceeding photosynthetic CO2 absorption. This study suggests that mature farmed kelps should be harvested in time to best utilize their carbon sink function and environmental benefits, which has guiding significance for the rational management of seaweed farming.
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  • 4
    Publication Date: 2023-12-18
    Description: Total alkalinity (TA) is an important variable of the ocean carbonate system. In coastal oceans, carbonate system dynamics are controlled by a range of processes including photosynthesis and respiration, calcification, mixing of water masses, continental inputs, temperature changes, and seasonal upwelling. Assessments of diel, seasonal and interannual variations in TA are required to understand the carbon cycle in coastal oceans. However, our understanding of these variations remains underdeveloped due to limitations in observational techniques. Autonomous TA measurements are therefore required. In this study, an in situ TA analyzer (ISA-TA) based on a single-point titration with spectrophotometric pH detection was deployed in Tong'an Bay, Xiamen, China, over a five-month period in 2021 to determine diel and seasonal TA variations. The TA observations were combined with an artificial neural network (ANN) model to construct TA prediction models for this area. This provided a simple method to investigate TA variations in this region and was applied to predict surface water TA between March and April 2021. The in situ TA observations showed that TA values in Tong'an Bay varied within a range from 1931 to 2294 μmol kg−1 over the study period, with low TA in late winter, early summer and late summer, and high TA in early winter. The TA variations in late summer and early winter were mainly controlled by mixing of water bodies. The diel variations of TA were greatly determined by tides, with a diel amplitude of 9 to 247 μmol kg−1. The ANN model used temperature, salinity, chlorophyll, and dissolved oxygen to estimate TA, with a root-mean-square error (RMSE) of ∼14 μmol kg−1, with salinity as the input variable with the greatest weight. The approach of combining ISA-TA observations with an ANN model can be extended to study the carbonate system in other coastal regions.
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  • 5
    Publication Date: 2024-01-17
    Description: Highlights • SPM concentration and organic fractions are analyzed in coastal-offshore gradients • Diagnostic model of SPM allows separating fresh, labile from less reactive PON • Analysis of PON fractions reveals a characteristic area, the transition zone • There, particle settling is enhanced, fostering their transport back to the coast, which controls the fate of organic matter • The transition zone is generally confined to water depths below 20 m Abstract Identifying the mechanisms that contribute to the variability of suspended particulate matter concentrations in coastal areas is important but difficult, especially due to the complexity of physical and biogeochemical interactions involved. Our study addresses this complexity and investigates changes in the horizontal spread and composition of particles, focusing on cross-coastal gradients in the southern North Sea and the English Channel. A semi-empirical model is applied on in situ data of SPM and its organic fraction to resolve the relationship between organic and inorganic suspended particles. The derived equations are applied onto remote sensing products of SPM concentration, which provide monthly synoptic maps of particulate organic matter concentrations (here, particulate organic nitrogen) at the surface together with their labile and less reactive fractions. Comparing these fractions of particulate organic matter reveals their characteristic features along the coastal-offshore gradient, with an area of increased settling rate for particles generally observed between 5 and 30 km from the coast. We identify this area as the transition zone between coastal and offshore waters with respect to particle dynamics. Presumably, in that area, the turbulence range and particle composition favor particle settling, while hydrodynamic processes tend to transport particles of the seabed back towards the coast. Bathymetry plays an important role in controlling the range of turbulent dissipation energy values in the water column, and we observe that the transition zone in the southern North Sea is generally confined to water depths below 20 m. Seasonal variations in suspended particle dynamics are linked to biological processes enhancing particle flocculation, which do not affect the location of the transition zone. We identify the criteria that allow a transition zone and discuss the cases where it is not observed in the domain. The impact of these particle dynamics on coastal carbon storage and export is discussed.
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  • 6
    Publication Date: 2024-01-30
    Description: Coastal German waters contain about 1.6 million tons of dumped munition, mostly left after World Wars. This study investigated the benthic macrofauna around the 'Kolberger Heide' munition dumpsite (Baltic Sea). A total of 93 macrofauna grab samples were obtained in the proximity of the munition dumpsite and in reference areas. Environmental variables analysed included the latitude/longitude, depth, terrain ruggedness, sediment grainsize distribution, TNT concentration in the bottom water and distance to the centre of munition dumpsite. The overall abundance, biomass and diversity varied among these groups, though demonstrated no clear differences regarding the proximity to munition and modelled near-bottom dissolved TNT. Among individual taxa, however, a total of 16 species demonstrated significant correlation with TNT concentration. Moreover, TNT may serve as a predictor for the distribution of three species: molluscs Retusa truncatula, Varicorbula gibba and polychaete Spio goniocephala. Possible reasons for the species distribution including their biological traits are discussed.
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  • 7
    Publication Date: 2024-01-30
    Description: Highlights • Global primitive arc lavas (Mg# ≥60) display notable δ49/47Ti heterogeneity. • Residual rutile imposes high δ49/47Ti of 0.24 ± 0.06 ‰ on hydrous, silicic slab melts. • Primitive Aleutian rhyodacites have the same δ49/47Ti as predicted for slab melts. • A variably diluted signature of slab melts is found in all eight subduction zones. • A slab melt component is required to generate silicic primitive arc lavas. Abstract It is still a matter of intense debate to what extent partial melting of the subducting slab contributes to arc magmatism in modern subduction zones. In particular, it is difficult to differentiate between silicate melts formed by partial melting of the slab, and aqueous fluids released during subsolidus dehydration as the main medium for slab-to-mantle wedge mass transfer. Here we use δ49/47Ti (the deviation in 49Ti/47Ti of a sample to the OL-Ti reference material) as a robust geochemical tracer of slab melting. Hydrous partial melting of subducted oceanic crust and the superjacent sedimentary layer produces silicic melts in equilibrium with residual rutile. Modelling shows that such silicic slab melts have notably higher δ49/47Ti (+0.24 ± 0.06 ‰) than their protolith due to the strong preference of rutile for the lighter isotopes of Ti. In contrast, even highly saline fluids cannot carry Ti from the slab and hence hydrous peridotite partial melts have δ49/47Ti similar to mid-ocean ridge basalts (MORB; ca. 0 ‰). Primitive (Mg# ≥60) arc lavas from eight subduction zones that are unaffected by fractional crystallisation of Fe-Ti oxides show a more than tenfold larger variation in δ49/47Ti than found in MORB. In particular, primitive arc lavas display a striking correlation between SiO2 content and δ49/47Ti that ranges from island arc basalts overlapping with MORB, to primitive rhyodacites with δ49/47Ti up to 0.26 ‰ erupted in the western Aleutian arc. The elevated δ49/47Ti of these primitive arc lavas provides conclusive evidence for partial melts of the slab as a key medium for mass transfer in subduction zones. The Aleutian rhyodacites represent a rare example of slab melts that have traversed the mantle wedge with minimal modification. More commonly, slab melts interact with the mantle wedge to form an array of primary arc magmas that are a blend of slab- and peridotite-derived melt. We identify primitive arc lavas with a clearly resolvable slab melt signature in all eight subduction zone localities, confirming that slab melting is prevalent in modern subduction zones.
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  • 8
    Publication Date: 2024-01-30
    Description: Artificial upwelling has been discussed as a nature-based solution to fertilize currently unproductive areas of the ocean to enhance food web productivity and atmospheric CO2 sequestration. The efficacy of this approach may be closely tied to the nutrient stoichiometry of the upwelled water, as Si-rich water upwelling should benefit the growth of diatoms, who are key players for primary production, carbon export and food web efficiency. With a mesocosm experiment in subtropical waters, we assessed the physiological and functional responses of an oligotrophic phytoplankton community to artificial upwelling under varying Si:N ratios (0.07-1.33). Deep water fertilization led to strongly enhanced primary productivity rates and net autotrophy across Si scenarios. At the community level, Si-rich upwelling temporarily increased primary production and consistently enhanced diatom growth, producing up to 10-fold higher abundances compared to Si-deficient upwelling. At the organism level, contrasting effects were observed. On the one hand, silicification and size of diatom cells remained unaffected by Si:N, which is surprising given the direct dependency of these traits on Si. On the other hand, diatom Chlorophyll a density and carbon density were strongly reduced and particulate matter C:N was elevated under Si-rich upwelling. This suggests a reduced nutritional value for higher trophic levels under high Si:N ratios. Despite these strong qualitative changes under high Si, diatom cells appeared healthy and showed high photosynthetic efficiency. Our findings reveal great physiological plasticity and adaptability in phytoplankton under artificial upwelling, with Si-dependent trade-offs between primary producer quantity and quality.
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  • 9
    Publication Date: 2024-01-30
    Description: Highlights • An event-scale, complete lithostratigraphic column for the Miocene BFVA was created through extensive field volcanology. • Field volcanology was supplemented by volcanic glass geochemistry to separate the eruptions. • An example is presented how to undertake lithostratigraphy-based classification in poorly preserved, deeply eroded volcanic terrains. • In the ancient BFVA landscape, sea cover during eruptions and terrestrial deposition is evident. Abstract This study documents the volcanic evolution of the Miocene silicic Bükk Foreland Volcanic Area (BFVA), Northern Hungary (Central Europe) at an event-scale. The BFVA is a deeply eroded and dissected volcanic field dominated by multiple, several 10-m thick, valley-filling silicic ignimbrite units, which are chemically and texturally very similar to each other. Hence, establishing lateral correlation is a real challenge due to the sporadic and small-scale outcrops and lack of stratotypes. Detailed field observations allowed us to identify eleven lithological members including fourteen eruption events and establish a nearly complete lithostratigraphic correlation between fifteen outcrops across the BFVA. Primary pyroclastic material of each member was sampled, and volcanic glass was geochemically analyzed for major and trace element composition. The geochemical results confirm the field-based classification of the members and enable the correlation of distinct outcrops. The major and trace element composition of the glassy pyroclasts of each member of the BFVA served as basis to create a field-wide chemical reference database for regional correlational studies. Here, a new lithostratigraphic classification scheme (consisting of one lithostratigraphic formation and eleven members) is presented, which reflects the challenges unraveling the stratigraphy of ancient volcanic terrains. The field-based event-scale lithostratigraphy of the BFVA suggests a wet, partly sea-covered depositional environment in the close vicinity of the eruption centers providing favorable conditions to ‘fuel’ silicic explosive phreatomagmatism. On the contrary, paleosol horizons formed after almost each major eruption event or sequence suggests an overall near-coast terrestrial environment for the BFVA, where the emplacement of the pyroclastic material occurred.
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  • 10
    Publication Date: 2024-01-30
    Description: Coastal upwelling areas are extraordinarily productive environments where prokaryotic communities, the principal remineralizers of dissolved organic matter (DOM), rapidly respond to phytoplankton bloom and decay dynamics. Nevertheless, the extent of variability of key microbial functions in such dynamic waters remains largely unconstrained. Our metatranscriptomics analyses of 162 marker genes encoding ecologically relevant prokaryotic functions showed distinct spatial-temporal patterns in the NW Iberian Peninsula upwelling area. Short-term (daily) changes in specific bacterial functions associated with changes in biotic and abiotic factors were superimposed on seasonal variability. Taxonomic and functional specialization of prokaryotic communities, based mostly on different resource acquisition strategies, was observed. Our results uncovered the potential influence of prokaryotic functioning on phytoplankton bloom composition and development (e.g., Cellvibrionales and Flavobacteriales increased relative gene expression related to vitamin B12 and siderophore metabolisms during Chaetoceros and Dinophyceae summer blooms). Notably, bacterial adjustments to C- or N-limitation and DMSP availability during summer phytoplankton blooms and different spatial-temporal patterns of variability in the expression of genes with different phosphate affinity indicated a complex role of resource availability in structuring bacterial communities in this upwelling system. Also, a crucial role of Cellvibrionales in the degradation of DOM (carbohydrate metabolism, TCA cycle, proteorhodopsin, ammonium, and phosphate uptake genes) during the summer phytoplankton bloom was found. Overall, this dataset revealed an intertwined mosaic of microbial interactions and nutrient utilization patterns along a spatial-temporal gradient that needs to be considered if we aim to understand the biogeochemical processes in some of the most productive ecosystems in the world´s oceans.
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  • 11
    Publication Date: 2024-02-01
    Description: Regime shifts in the diatom–dinoflagellate composition have occurred in the Baltic Sea (BS) and Bohai Sea (BHS) under eutrophication and have affected the entire coastal ecosystem, damaging the regulatory, provisioning, cultural, and supporting service functions of marine ecosystems. Therefore, finding a solution to restore the balance of phytoplankton community composition and mitigate eutrophication is of utmost importance. In this study, the Driver (per capita gross domestic product)-Pressure (terrestrial inputs)-State (seawater environmental parameters)-Impact (proportions of diatoms and dinoflagellates)-Response (eutrophication governance projects) framework served as a guide for our analysis of the causal relationship among various environmental components in the coastal system. The relevant data in BS and BHS spanning from the 1950s to the 2010s were collected and used to construct a diatom–dinoflagellate composition single index, which allowed us to identify the shifts in regimes (mutation points and phases) of the diatom–dinoflagellate composition and environmental factors using sequential t-test analysis. We also identified key environmental factors that moderated the diatom–dinoflagellate composition using redundancy analysis and analyzed the partial effects of the main environmental factors on the diatom–dinoflagellate composition using a generalized additive model. Finally, the regulation of the eutrophication governance investment on diatom–dinoflagellate composition was investigated. We found that (1) BS is a “time machine,” with coastal eutrophication governance and regime shift of diatom–dinoflagellate composition and environmental factors two decades earlier than that in BHS; (2) in BS, the key moderation factor of diatom proportion is SiO3-Si and those of dinoflagellates are sea surface salinity and N:P ratio; in BHS, the key moderation factors of diatom proportion are PO4-P and Si:N ratio and those of dinoflagellate are dissolved inorganic nitrogen and N:P and Si:P ratios; (3) it is projected that BHS will enter its recovery phase from eutrophication after mid-2020s. In summary, the N/P/Si stoichiometric relationships should be given greater consideration, with the exception of the “dose-response” relationship in both sea areas. Our results indicate an urgent need for an improved mechanistic understanding of how phytoplankton biodiversity changes in response to changes in nutrient load and how we should ultimately deal with the challenges that arise.
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  • 12
    Publication Date: 2024-02-01
    Description: The element silicon is everywhere! In fact, silicon is the second most abundant element in Earth’s crust. Silicon in rocks and minerals breaks down and is transported from rivers and streams into the world’s oceans. Many marine organisms need silicon as it is a crucial nutrient to build their skeletons. Silicon eventually reaches the seafloor, but its journey into the abyss is not straightforward due to biological, physical, and chemical processes. All these processes transport and transform silicon, creating a cycle that we call the marine silicon cycle. The silicon cycle is directly connected to the carbon cycle, making silicon a key player in the regulation of Earth’s climate. In this article, we discuss why we need to understand the marine silicon cycle, explain the steps that happen in the ocean, and demonstrate how the marine silicon cycle affects humans.
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  • 13
    Publication Date: 2024-02-01
    Description: Silicon is a crucial nutrient that can join with the element oxygen to form a substance commonly called silica. Silica, commonly known as glass, is found in rocks in the Earth’s crust and dissolves into the oceans, where organisms like algae and sponges use it to build their glassy skeletons. This process, called biosilicification, is extremely important in the silica cycle. Over time, organisms have changed the silica cycle. Today, because of these organisms, the oceans no longer contain much silica. However, when the Earth was younger and these organisms had not evolved yet, no biological processes affected silica in the oceans. The evolution of these oceanic organisms across time has removed silica from the oceans. In this article, we discuss how the evolution of silicon-using sponges, as well as tiny organisms called zooplankton and algae, have changed the amount of silica in the world’s oceans through geologic time.
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  • 14
    Publication Date: 2024-02-05
    Description: A La Niña condition in the equatorial Pacific began in the early summer of 2020 and has lasted more than two and a half years (referred to as the 2020 La Niña hereafter). Predicting its temporal evolution had attracted a lot of attention. Considering the possible phase-locked impact of the 11-year solar cycle on the tropical Pacific variability, in this study the authors present the possible modulations by the solar cycle 25 (SC25) started from December 2019, on the future temporal evolution of the 2020 La Niña. Based on statistical features of historical solar cycles, the authors propose three possible scenarios of the timing of the SC25 maximum year and discuss its possible impacts on the temporal evolution of the 2020 La Niña in the next two years. The ongoing ascending phase of SC25 dampens the development of a super El Niño condition to some extent in 2023.
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  • 15
    Publication Date: 2024-02-12
    Description: Highlights: • Change in sea urchin species composition from RBC and NRBC habitats. • Sand coverage is an important factor that influences the sea urchin species composition. • The relationship between sea urchins and their habitat is species-specific. Sea urchins are important components of marine ecosystems and can act as bioindicators, reflecting the health of reefs. The spatial patterns of sea urchins are largely shaped by the type of habitat. In Hong Kong, coral communities are divided into two distinct types: reef -building coral habitats and non -reef -building coral habitats. In summer 2020, a qualitative survey was conducted using SCUBA at 56 sites across eastern and western waters, recording a total of 11 species from 6 families of sea urchins. Out of these 56 sites, 14 were selected for a quantitative survey to investigate the relationship between sea urchin assemblages and the two types of coral habitat. We found that the species composition of sea urchins differed significantly between the two habitats, and the presence of sand was a critical factor influencing the species composition of sea urchins. Sand coverage had a positive effect on Salmasic sphaeroides abundance but a negative effect on the abundance of Diadema setosum and Heliocidaris crassispina. The distribution of sea urchins across different degrees of sand coverage may be associated with food availability or species -specific adaptive behaviour, likely due to niche preferences.
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  • 16
    Publication Date: 2024-02-12
    Description: Highlights • East Asian climate evolution was dependent on the latitude of the proto-Tibetan Plateau in the deep past; • Global warming induced wetting at mid-latitude East Asian in the mid-Cretaceous; • The proto-Tibetan Plateau uplift led to drying in the subtropical East Asian in the mid-Cretaceous. Abstract Sedimentary records indicate that subtropical and mid-latitude East Asia exhibited considerable drying and wetting, respectively, during the mid-Cretaceous, which is considered to be relevant to much higher atmospheric carbon dioxide (pCO2) concentrations and/or proto-Tibetan Plateau (proto-TP) uplift. In order to explore and compare their roles on the East Asian climate evolution, we conducted simulations of the mid-Cretaceous climate system with different atmospheric pCO2 levels and varying topographies. The results show that both factors had significant influences on the East Asian climate. As the increase in atmospheric pCO2 levels from ∼560–1120 ppmv to ∼1120–2240 ppmv, the precipitation increases considerably over mid-latitude East Asia, but only small changes in the subtropical portion of East Asia occur. Simultaneously, the effects of the proto-TP uplift are opposite to those of global warming trend during that period. Generally, it leads to a precipitation decrease over subtropical East Asia, but rather minor changes over mid-latitude East Asia. These changes are qualitatively consistent with the deduction based on the geological records, but the magnitudes of the modeled precipitation changes are relatively smaller. Therefore, we can conclude that the subtropical East Asian drying during the mid-Cretaceous can be partly explained by the proto-TP uplift, while the mid-latitude East Asian wetting was partly due to global warming. However, additional factor(s) also played a significant role in the East Asian climate evolution during the mid-Cretaceous.
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  • 17
    Publication Date: 2024-02-12
    Description: Carbon dioxide removal (CDR) – the creation, enhancement, and upscaling of carbon sinks – has become a pillar of national and corporate commitments towards Net Zero emissions, as well as pathways towards realizing the Paris Agreement's ambitious temperature targets. In this perspective, we explore CDR as an emerging issue of Earth System Governance (ESG). We draw on the results of a workshop at the 2022 Earth System Governance conference that mapped a range of actors, activities, and issues relevant to carbon removal, and refined them into research questions spanning four intersecting areas: modeling and systems assessment, societal appraisal, policy, and innovation and industry. We filter these questions through the five lenses of the ESG framework and highlight several key ‘cross-cutting’ issues that could form the basis of an integrated ESG research agenda on CDR.
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  • 18
    Publication Date: 2024-02-12
    Description: Highlights • Cu complexation was measured for the first time in the Fram Strait region. • Cu-binding ligand concentrations and binding strength varied longitudinally in the Fram Strait. • More than 99 % of dCu was organically complexed by strong ligands. • On the Greenland shelf the Transpolar Drift and the coastal processes were the main sources of Cu ligands. Abstract The Fram Strait represents the major gateway of Arctic Ocean waters towards the Nordic Seas and North Atlantic Ocean and is a key region to study the impact of climate change on biogeochemical cycles. In the region, information about trace metal speciation, such as copper, is scarce. This manuscript presents the concentrations and conditional stability constants of copper-binding ligands (LCu and log KcondCu2+L) in the water column of Fram Strait and the Greenland shelf (GEOTRACES cruise GN05). Cu-binding ligands were analysed by Competitive Ligand Exchange-Adsorptive Cathodic Stripping Voltammetry (CLE-ACSV) using salicylaldoxime (SA) as competitive ligand. Based on water masses and the hydrodynamic influences, three provinces were considered (coast, shelf, and Fram Strait) and differences were observed between regions and water masses. The strongest variability was observed in surface waters, with increasing LCu concentrations (mean values: Fram Strait = 2.6 ± 1.0 nM; shelf = 5.2 ± 1.3 nM; coast = 6.4 ± 0.8 nM) and decreasing log KcondCu2+L values (mean values: Fram Strait = 15.7 ± 0.3; shelf = 15.2 ± 0.3; coast = 14.8 ± 0.3) towards the west. The surface LCu concentrations obtained above the Greenland shelf indicate a supply from the coastal environment to the Polar Surface Water (PSW) which is an addition to the ligand exported from the central Arctic to Fram Strait. The significant differences (in terms of LCu and log KcondCu2+L) between shelf and coastal samples were explained considering the processes which modify ligand concentrations and binding strengths, such as biological activity in sea-ice, phytoplankton bloom in surface waters, bacterial degradation, and meltwater discharge from 79NG glacier terminus. Overall, the ligand concentration exceeded those of dissolved Cu (dCu) and kept the free copper (Cu2+) concentrations at femtomolar levels (0.13–21.13 fM). This indicates that Cu2+ toxicity limits were not reached and dCu levels were stabilized in surface waters by organic complexes, which favoured its transport to the Nordic Seas and North Atlantic Ocean and the development of microorganism.
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  • 19
    Publication Date: 2024-02-14
    Description: The increasing global demand for seafood, coupled with the limitations of current fish stocks and aquaculture practices, requires the development of sustainable aquaculture solutions. In this context, this study explores the potential of a novel cage technology - Flow2Vortex - for the cultivation of jellyfish, a low-trophic-level organism with increasing market demand. The unique cage design creates a laminar and circular water flow, providing optimal conditions for cultivating fragile planktonic species. Indoor experiments demonstrated the successful growth of jellyfish in the cage, with growth rates of up to 11.6% per day. In addition, field tests in open waters confirmed the cage's ability to maintain a diffuse and controlled flow inside, even under strong external currents. The cage also maintained significantly higher zooplankton concentrations than the surrounding environment, offering a consistent food source for the cultivated jellyfish. These findings highlight the potential of the Flow2Vortex cage for scalable indoor and outdoor cultivation of low-trophic-level organisms, such as jellyfish, contributing to the diversification and sustainability of aquaculture practices.
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  • 20
  • 21
    Publication Date: 2024-02-22
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  • 22
    Publication Date: 2024-02-22
    Description: Highlights • More diverse non-native taxa generally include more economically costly species. • Chordates, nematodes and pathogens are among significantly over-represented taxa. • Monetary cost magnitude links positively to numbers of costly invasive species. • Costs are biased towards a few ‘hyper-costly’ invasive species groups. • Future invasion rates will continue to harbour new economically costly species. Abstract A dominant syndrome of the Anthropocene is the rapid worldwide spread of invasive species with devastating environmental and socio-economic impacts. However, the dynamics underlying the impacts of biological invasions remain contested. A hypothesis posits that the richness of impactful invasive species increases proportionally with the richness of non-native species more generally. A competing hypothesis suggests that certain species features disproportionately enhance the chances of non-native species becoming impactful, causing invasive species to arise disproportionately relative to the numbers of non-native species. We test whether invasive species with reported monetary costs reflect global numbers of established non-native species among phyla, classes, and families. Our results reveal that numbers of invasive species with economic costs largely reflect non-native species richness among taxa (i.e., in 96 % of families). However, a few costly taxa were over- and under-represented, and their composition differed among environments and regions. Chordates, nematodes, and pathogenic groups tended to be the most over-represented phyla with reported monetary costs, with mammals, insects, fungi, roundworms, and medically-important microorganisms being over-represented classes. Numbers of costly invasive species increased significantly with non-native richness per taxon, while monetary cost magnitudes at the family level were also significantly related to costly invasive species richness. Costs were biased towards a few ‘hyper-costly’ taxa (such as termites, mosquitoes, cats, weevils, rodents, ants, and asters). Ordination analysis revealed significant dissimilarity between non-native and costly invasive taxon assemblages. These results highlight taxonomic groups which harbour disproportionately high numbers of costly invasive species and monetary cost magnitudes. Collectively, our findings support prevention of arrival and containment of spread of non-native species as a whole through effective strategies for mitigation of the rapidly amplifying impacts of invasive species. Yet, the hyper- costly taxa identified here should receive greater focus from managers to reduce impacts of current invasive species.
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    Publication Date: 2024-02-23
    Description: Highlights: • Ca. 418 ka Pauzhetka tephra from South Kamchatka was found in 11 marine sediment cores. • New major and trace element analyses allow identification of tephra glasses. • K/Ti and K/Fe maxima mark the Pauzhetka tephra presence in marine sediments. • The tephra occurs at Marine Isotope Stages 12 to 11c and below the Bermuda excursion. • The revised ash dispersal covers vast areas in the NW Pacific and Okhotsk Sea. Abstract: The distal Pauzhetka tephra, formed by a large caldera-forming volcanic eruption in South Kamchatka, has been identified in eleven recently recovered marine sediment cores based on major and trace element compositions of tephra glass. Ten SO264 cores form a transect along the Emperor Seamount Chain (ESC) in the Northwest (NW) Pacific between ∼50.3° and ∼45°N, 800–1200 km southeast of the Pauzhetka caldera. One additional core LV28-41-4 was retrieved in the Okhotsk Sea, ∼600 km west of the caldera. The Pauzhetka tephra glass shards have a characteristic medium-K rhyolite composition and trace element content compatible with the rear-arc position of the source volcano that ensures their identification. In the NW Pacific SO264 cores, the tephra is preserved as layers in cores 33, 47, 49, 53, 55, 56 and 62, as a lens in core 45, and as cryptotephra in cores 57 and 66. It forms a cryptotephra in the Okhotsk Sea core LV28-41-4. Distinctively high XRF-retrieved K/Ti and K/Fe ratios compared to those for the host sediments help identify the Pauzhetka tephra. According to our refined stable oxygen isotope (δ18O)- and magneto-stratigraphy of two studied and two reference cores, the Pauzhetka tephra occurs within a local δ18O maximum during a transition from marine isotope stage 12 to 11c (Termination V) and below a paleointensity minimum referred to as the Bermuda excursion, at ca. 418 ka. Using the tephra age as an isochron, we show that average linear sedimentation rates decrease southward along a transect of the SO264 cores, except in core 55. It partially reflects an intensification of mid-depth currents causing winnowing, erosion or non-deposition along the ESC over the past 418 kyr. An increased linear sedimentation rate in core 55, recovered from the southern leeward side of the Minnetonka Seamount, appears to record the pelagic accumulation protected from the mid-depth current influence. Our findings expand the former ash dispersal area farther southeast in the NW Pacific and southwest in the Okhotsk Sea. The new data on the tephra thickness supports the axis direction of the fallout zone southeast of the Pauzhetka caldera. Our results suggest the Pauzhetka tephra as a key middle Pleistocene isochron for the stratigraphy and correlation of the NW Pacific and Okhotsk Sea sediments.
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  • 26
    Publication Date: 2024-02-23
    Description: Octocorals (Cnidaria: Anthozoa) have a global distribution and form benthic assemblages along the depth gradient, from shallow to deep waters. They often occur below SCUBA diving limits, where they can become dominant habitat builders and aggregate different taxa. During a cruise in February 2023, one octocoral specimen was collected at 1453 m depth at Kebrit Deep, in the northern Saudi Arabian Red Sea axis, an area with extremely high temperature and salinity profiles at depth. Morphological analysis coupled with DNA barcoding using two mitochondrial markers ( COI and mtMuts ), revealed that the coral belongs to Acanthogorgia , a genus of azooxanthellate octocorals known to occur from 3 to 2300 m depths in cold, temperate and tropical waters. In the Red Sea, the genus was previously only known from shallower waters. Hence, we report the deepest record of the genus Acanthogorgia from the warm and saline Red Sea basin. This finding provides novel insights on deep-water octocoral diversity in the Red Sea, a still scantily explored area of the world, while emphasizing the need for further explorations at depth.
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  • 27
    Publication Date: 2024-02-28
    Description: Recent studies have begun to explore the potential of enhanced benthic weathering (EBW) in the Baltic Sea as a measure for climate change mitigation. To augment the understanding of EBW under seasonally changing conditions, this study aims to investigate weathering processes under anoxia to hypoxia in corrosive bottom waters, which reflect late summer conditions in the Baltic Sea. Dunite and calcite were added to sediment cores retrieved from Eckernförde Bay (Western Baltic Sea) with a constant flow-through of deoxygenated, CO 2 -enriched Baltic Sea bottom water. The addition of both materials increased benthic alkalinity release by 2.94 μmol cm −2 d −1 (calcite) and 1.12 μmol cm −2 d −1 (dunite), compared to the unamended control experiment. These excess fluxes are significantly higher than those obtained under winter conditions. The comparison with bottom water oxygen concentrations emphasizes that highest fluxes of alkalinity were associated with anoxic phases of the experiment. An increase in Ca and Si fluxes showed that the enhanced alkalinity fluxes could be attributed to calcite and dunite weathering. First order rate constants calculated based on these data were close to rates published in previous studies conducted under different conditions. This highlights the suitability of these proxies for mineral dissolution and justifies the use of these rate constants in modeling studies investigating EBW in the Baltic Sea and areas with similar chemical conditions. Generally stable pH profiles over the course of the experiment, together with the fact that the added minerals remained on the sediment surface, suggest that corrosive bottom waters were the main driving factor for the dissolution of the added minerals. These factors have important implications for the choice of mineral and timing for EBW as a possible marine carbon dioxide removal method in seasonally hypoxic to anoxic regions of the Baltic Sea.
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  • 28
    Publication Date: 2024-02-29
    Description: Highlights • Negligible Ba removal observed in the Rainbow hydrothermal system. • Insignificant modification of Ba isotope composition of the vent fluid endmember. • Rainbow vent introduces isotopically light Ba (−0.17) to the deep Atlantic Ocean. • Hydrothermal inputs contribute 4.6 ± 2.2 Gmol/yr Ba to the ocean. Abstract The marine barium (Ba) cycle is closely connected to the short-timescale carbon cycle, and Ba serves as a valuable paleo proxy for export production, ocean alkalinity, and terrestrial inputs. However, the marine Ba budget is poorly constrained, particularly regarding the fluxes of hydrothermally sourced Ba, which hinders our understanding of the Ba cycle and use of Ba-based proxies. Recent studies have suggested a modern source-sink imbalance of Ba isotopes in the global ocean, with sources being overall isotopically heavier than the sinks, and the hydrothermal Ba inputs were considered isotopically heavy sources. In this study, we present the first investigation of Ba and its isotopes in a non-buoyant hydrothermal plume based on dissolved and particulate samples collected from the Rainbow hydrothermal vent field on the Mid-Atlantic Ridge. Our data reveal strong hydrothermal signals at near-field stations, as evidenced by helium isotopes, accompanied by elevated concentrations of dissolved and particulate Ba. Dissolved Ba isotope compositions (δ138Ba) in hydrothermally influenced deep waters (∼0.3 ) are lighter than at similar depths of far-field stations (∼0.45 ) in the Atlantic Ocean. The concentrations and isotopic compositions of dissolved and labile particulate Ba in the non-buoyant hydrothermal plume can be explained by conservative mixing between a Ba-enriched hydrothermal component and North Atlantic Deep Water. By extrapolating the correlations to the vent fluid endmember, our results suggest that there is negligible removal of Ba, and insignificant modification of Ba isotopic signatures, from the vent fluid endmember to the non-buoyant hydrothermal plume. This indicates that the Rainbow hydrothermal system introduces isotopically light Ba (−0.17 ± 0.05 ) to the deep Atlantic Ocean. We estimate that global hydrothermal inputs of Ba are 4.6 ± 2.2 Gmol/yr. These observations highlight the potential of hydrothermal Ba to be an isotopically light source component of the marine Ba isotope budget.
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  • 29
    Publication Date: 2024-03-01
    Description: Highlights: • Transcriptomic immune response assessments in seahorse (Hippocampus erectus). • Seahorses exposed in two phases to heat-killed Vibrio and Tenacibaculum strains. • Adaptive immune memory evidence (double-exposed) and increased naivety to Tenacibaculum. • Upregulated gene expression pertaining to potential innate ‘trained immunity’. • Trained immunity potential compensator for deduced MHC II loss of function. Evolutionary adaptations in the Syngnathidae teleost family (seahorses, pipefish and seadragons) culminated in an array of spectacular morphologies, key immune gene losses, and the enigmatic male pregnancy. In seahorses, genome modifications associated with immunoglobulins, complement, and major histocompatibility complex (MHC II) pathway components raise questions concerning their immunological efficiency and the evolution of compensatory measures that may act in their place. In this investigation heat-killed bacteria (Vibrio aestuarianus and Tenacibaculum maritimum) were used in a two-phased experiment to assess the immune response dynamics of Hippocampus erectus. Gill transcriptomes from double and single-exposed individuals were analysed in order to determine the differentially expressed genes contributing to immune system responses towards immune priming. Double-exposed individuals exhibited a greater adaptive immune response when compared with single-exposed individuals, while single-exposed individuals, particularly with V. aestuarianus replicates, associated more with the innate branch of the immune system. T. maritimum double-exposed replicates exhibited the strongest immune reaction, likely due to their immunological naivety towards the bacterium, while there are also potential signs of innate trained immunity. MHC II upregulated expression was identified in selected V. aestuarianus-exposed seahorses, in the absence of other pathway constituents suggesting a possible alternative or non-classical MHC II immune function in seahorses. Gene Ontology (GO) enrichment analysis highlighted prominent angiogenesis activity following secondary exposure, which could be linked to an adaptive immune process in seahorses. This investigation highlights the prominent role of T-cell mediated adaptive immune responses in seahorses when exposed to sequential foreign bacteria exposures. If classical MHC II pathway function has been lost, innate trained immunity in syngnathids could be a potential compensatory mechanism.
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  • 30
    Publication Date: 2024-03-01
    Description: Rhodaliids, a specific family of siphonophores inhabiting the benthic zone, have remained enigmatic due to their rarity and elusive nature. These unique organisms, primarily found in open ocean habitats, exhibit distinctive features and are characterized by complex structures. During the Red Sea Decade Expedition, two rhodaliid specimens were collected at the sea bed at water depths of 438 and 495 meters. Regardless of challenges in specimen preservation, detailed morphological analysis revealed unique characteristics. Genetic analysis, employing the 16S rRNA marker, revealed one specimen closely related to Thermopalia taraxaca , while the taxonomic traits of this specimen suggested the identification of Archangelopsis jagoa . While most of the morphological features of the second specimen were also very similar to A. jagoa , some differences in coloration suggest the discovery of either an unusual colour variant or a potential new species within this genus. Notably, this study reports the first sequencing of A. jagoa . This species demonstrated a capacity to thrive in low-oxygen environments, challenging conventional assumptions about their habitat requirements. Despite difficulties in specimen handling and genetic analysis limitations due to a lack of comprehensive data, this research sheds light on the elusive world of benthic rhodaliids.
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  • 31
    Publication Date: 2024-03-04
    Description: Climate change is driving compositional shifts in ecological communities directly by affecting species and indirectly through changes in species interactions. For example, competitive hierarchies can be inversed when competitive dominants are more susceptible to climate change. The brown seaweed Fucus vesiculosus is a foundation species in the Baltic Sea, experiencing novel interactions with the invasive red seaweed Gracilaria vermiculophylla, which is known for its high tolerance to environmental stress. We investigated the direct and interactive effects of warming and co-occurrence of the two algal species on their performance, by applying four climate change-relevant temperature scenarios: 1) cooling ) 2 °C below ambient – representing past conditions), 2) ambient summer temperature (18 °C), 3) IPCC RCP2.6 warming scenario (1 °C above ambient), and 4) RCP8.5 warming (3 °C above ambient) for 30 days and two compositional levels (mono and co-cultured algae) in a fully-crossed design. The RCP8.5 warming scenario increased photosynthesis, respiration, and nutrients' uptake rates of mono- and co-cultured G. vermiculophylla while growth was reduced. An increase in photosynthesis and essential nutrients' uptake and, at the same time, a growth reduction might result from increasing stress and energy demand of G. vermiculophylla under warming. In contrast, the growth of mono-cultured F. vesiculosus significantly increased in the highest warming treatment (+3 °C). The cooling treatment (−2 °C) exerted a slight negative effect only on co-cultured F. vesiculosus photosynthesis, compared to the ambient treatment. Interestingly, at ambient and warming (RCP2.6 and RCP8.5 scenarios) treatments, both F. vesiculosus and G. vermiculophylla appear to benefit from the presence of each other. Our results suggest that short exposure of F. vesiculosus to moderate or severe global warming scenarios may not directly affect or even slightly enhance its performance, while G. vermiculophylla net performance (growth) could be directly hampered by warming.
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  • 32
    Publication Date: 2024-03-05
    Description: Highlights • Mercury methylation in sediment rapidly transported into water and diatoms. • CH3Hg flux was highest for sediments with higher sulfide and organic content. • Mineral and compressed sediment released minor Hg and CH3Hg. • Higher sediment Hg species flux does not correlate with high sediment content. • Stable isotope incubations provide substantial insight to environmental Hg cycling. Abstract Mercury (Hg) is a conspicuous and persistent global pollutant. Ionic Hg can be methylated into noxious methylmercury (CH3Hg), which biomagnifies in marine tropic webs and poses a health risk to humans and organisms. Sediment Hg methylation rates are variable, and the output flux of created CH3Hg are dependent on sediment characteristics and environmental factors. Thus, uncertainties remain about the formation and flux of CH3Hg from sediment, and how this could contribute to the bioaccumulative burden for coastal organisms in shallow ecosystems. Cores were collected from 3 estuarine locations along the Eastern USA to examine how sediments characteristics influence the introduction of Hg and CH3Hg into the base of the food chain. Stable isotopes of inorganic 200Hg and CH3199Hg were injected into sediments of individual cores, with cultured diatoms constrained to overlying waters. Five different treatments were done on duplicate cores, spiked with: (1) no Hg isotopes (control); (2) inorganic 200Hg; (3) CH3199Hg; (4) both 200Hg and CH3199Hg isotopes, (5) both 200Hg and CH3199Hg into overlying waters (not sediment). Experimental cores were incubated for 3 days under temperature and light controlled conditions. These results demonstrate that upper sediments characteristics lead to high variability in Hg cycling. Notably, sediments which contained abundant and peaty organic material (∼28 %LOI), had the highest pore water DOC (3206 μM) and displayed bands of sulfur reducing bacteria yielded the greatest methylation rate (1.97 % day−1) and subsequent diatom uptake of CH3200Hg (cell quota 0.18 amol/cell) in the overlying water.
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  • 33
    Publication Date: 2024-03-05
    Description: Highlights • Solutions to the climate crisis are not ahistorical. • Both social and technical processes explain their rise (or fall) on the agenda. • Thinking about ocean CDR closely co-evolved with scientific understandings of global climate change. • Ocean CDR methods have followed cycles of hype, controversy and disappointment. • Key sociotechnical configurations and narrative changes explain the new hype around ocean CDR. Abstract While the ocean has long been portrayed as a victim of climate change, threatened by ocean warming and acidification, it is now increasingly framed as a key solution to the climate crisis. In particular, the promising carbon sequestration potential of the ocean is being emphasised. In this paper, we seek to historicise the practices, discourses and actors that have constructed the ocean as a climate change solution space. We conceptualise the debate about the mitigation potential of the ocean as a contested site of governance, where varying actors form alliances and different sociotechnical narratives about climate action play out. Using an innovative quali-quantitative methodology which combines scientometrics with document analysis, observational fieldwork, and interviews, we outline three historical phases in the history of ocean carbon sequestration that follow recurring cycles of hype, controversy and disappointment. We argue that the most recent hype around ocean carbon sequestration was not triggered by a technological breakthrough or a reduction in scientific uncertainty, but by new socio-technical configurations and coalitions. We conclude by showing that how climate change solutions are put on the agenda and become legitimised is both a scientific and political process, linked to how science frames the climate crisis, and ultimately, its governance.
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  • 34
    Publication Date: 2024-03-08
    Description: Marine heatwaves (MHWs) are widely recognized as prolonged periods of significantly elevated sea surface temperatures, leading to substantial adverse impacts on marine ecosystems. However, a comprehensive understanding of their characteristics and potential changes under climate change in the South China Sea (SCS, 0 ∼ 25°N, 105 ∼ 125°E) remains insufficient. Here, utilizing the OISST V2.0 reanalysis dataset, our study first examines MHW characteristics and their trends in the SCS during the historical period (1982 ∼ 2014). Then, in accordance with the criteria established in this study, GFDL-ESM4, EC-Earth3-Veg, NESM3, EC-Earth3, and GFDL-CM4 are identified from the CMIP6 ensemble of 19 models for their enhanced simulations of historical MHW characteristics. Moreover, considering that the fixed and sliding threshold methods offer distinct perspectives on the future evolution of MHWs, we employ both approaches to evaluate MHW characteristics under projected scenarios for the future period (2015 ∼ 2100) and subsequently compare the disparities between the two methodologies. The outcomes obtained using these methods consistently indicate that MHWs in the SCS are anticipated to intensify and persist for longer durations in the future. Besides, addressing seasonal variability, the peak intensity of MHWs falls in May during both the historical period and the four projected future scenarios. This study provides valuable insights into the behavior of MHWs in the SCS within the context of climate change, underscoring the urgency of adopting effective mitigation strategies. Especially, the use of two definition methods provides a more comprehensive set of information for understanding the future changes of MHWs in the SCS.
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  • 35
    Publication Date: 2024-03-11
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  • 36
    Publication Date: 2024-03-18
    Description: Highlights: • Huidobria chilensis is an endemic shrub distributed in the south of the Atacama Desert with a disjunct population at the northern coast. • Population and genetic structure correlate with geographic distance and geological factors. • Rain fall and fog, as well as ground water, must be regarded as important factors for populations at the coast and the Andean valleys, respectively. • A combination of different software tool to analyze GBS data allowed a good understanding of the population structure and genetic diversity. Abstract: Survival in hyperarid deserts is a major challenge for life in general and for plants in particular. The Atacama Desert presents harsh conditions such as limited rainfall, crusted soils, high soil salinity, high altitude, and intense solar radiation. These conditions, together with paleoclimatic variations over the last 10 million years, have influenced the genetic structure and connectivity of plant populations, resulting in a diverse flora with high endemism. However, the diversification of most lineages appears to be relatively recent, in contrast to the reported age of the Atacama Desert and the onset and expansion of hyperarid conditions since the late Oligocene and early Miocene. A prominent exception is Huidobria chilensis (Loasaceae), which is thought to be endemic to the Atacama since the Eocene. However, it is still not understood why this plant has been successful in adapting to the harshening environmental conditions. To investigate its genetic structure in relation to the history of the Atacama Desert, we studied 186 individuals from 11 populations using genotyping-by-sequencing (GBS). A total of nearly 56 k genome-wide single nucleotide polymorphisms (SNPs) were analyzed for population structure and genetic diversity. We identified four genetic clusters corresponding to geographic regions: the coastal region south of Tocopilla, the Cordillera de la Costa around Chañaral, and the Copiapó catchment 1 and 2. Genetic diversity within and between these clusters was analyzed along with rainfall, altitude, and landscape data. Although the genetic data support `isolation by distance’ as a major factor for genetic divergence between populations, the study also reveals the influence of topography on the distribution of H. chilensis and highlights the role of hydrologically connected watersheds and rivers in plant migration and colonization. This shapes the species' evolutionary trajectory and genetic diversity. Understanding these patterns in H chilensis lets one draw general conclusions about adaptation and survival strategies of plants in extreme desert environments such as the Atacama.
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  • 37
    Publication Date: 2024-03-15
    Description: Highlights: • Microphytobenthos contributed to the particulate organic matter in both beaches. • Allochthonous materials provide relevant contributions to the POM in surf zones. • Estuarine subsidies' availability determines changes in consumers' isotopic niches. • Higher estuarine trophic subsidies resulted in narrower niches of dominant species. Abstract: Benthic invertebrates in the surf zone of exposed sandy beaches represent important links for energy circulation between benthic and pelagic food webs. This work assesses the trophic ecology of co-occurring epi- and hyper-benthic invertebrates inhabiting the surf zone of sandy beaches located close to an estuarine mouth. It illustrates that different sources of organic matter induce changes in resource utilization. The trophic positions, and the niche width and overlap of species were described using δ13C and δ15N stable isotope analysis. The contribution of different sources to the particulate organic matter was quantified through stable isotopes analysis and fatty acids profiles. Shifts in the trophic niches of dominant species reflected a decrease in the contribution of estuarine carbon to the diets along the coast. This change in contribution of estuarine carbon also influenced trophic niche properties: more diverse resources availability resulted in narrower niches without overlap while less diverse resources resulted in broad isotopic niches and a highest overlap. Results show that spatial variations in the availability of resources can modify carbon pathways and trophic interactions in coastal food webs. Whenever resources are abundant, species display a more specialized diet while food scarcity leads to broader diets, a pattern consistent with the optimal foraging theory. This resource maximization behavior commonly observed in nature is also occurring in surf zone ecosystems.
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  • 38
    Publication Date: 2024-03-15
    Description: Physical and chemical trace metal speciation are important for our understanding of metal cycling and potential toxicity to marine life. Trace metals can behave differently in diffusion processes or particle-solution interactions and have different bioavailabilities depending on their physical and chemical forms, which often depend on redox conditions. Here we investigated dissolved (〈 0.2 µm) and soluble (〈 0.02 µm) concentrations of Mn, Co, Ni, Fe, Cu, V, Mo, U, Cd, and As in oxic and suboxic deep-sea sediments of the central equatorial Pacific Ocean. Vanadium, Mo, U, As, and Cd showed no significant concentration differences between their dissolved and soluble forms, suggesting that they are present as inorganic ionic species or organic complexes in the truly dissolved or small colloidal fraction. In contrast, the colloidal fraction (〉 0.02 µm 〈 0.2 µm) of Mn, Co, Ni, and Cu increased with depth in oxic pore waters and Fe had the largest but variable colloidal pool. Soluble Mn, Co, and Ni were released in the uppermost 2-4 cm in the sediment because of reductive dissolution. The increasing colloidal fraction with depth suggests a decrease in the concentration of small organic ligands with depth, that are abundant in the surface sediment pore waters, and instead an increasing importance of larger (〉 0.02 µm) inorganic nanoparticles and colloids such as Mn and Fe (oxyhydr)oxides that control Mn, Fe, and Co cycling at depths 〉 10 cm. The distribution of Ni and Cu cannot be exclusively explained by inorganic nanoparticles and a shift from low to larger high molecular weight organic ligands might occur. These findings provide new insights into trace metal distributions in the dissolved phase, highlighting the diversity of metal complexes and the need to incorporate these in future calculations of benthic metal fluxes and ecotoxicity assessments, especially in oxic pore waters.
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  • 39
    Publication Date: 2024-03-22
    Description: High dissolved iron (dFe) concentrations of the order of 10-100 nmol L-1 are a feature of waters influenced by sedimentary inputs in oxygen minimum zones (OMZ). However, the temporal development of dFe concentrations is poorly defined due to a general reliance on snapshot cross-shelf sections to study marine trace metal dynamics. Multiple cruise campaigns since the 1980s have investigated Fe dynamics over the Peruvian shelf, particularly between 9-17°S where the shelf is broad, extremely productive and known to feature benthic dFe effluxes which are amongst the highest measured globally. This extensive long-term dataset uniquely allows us to study the interannual variability in dFe concentrations and their response to El Niño–Southern Oscillation (ENSO) events. By combining data from 11 cruises during the period 1984-2017 we are able to evaluate dFe dynamics on interannual timescales in a major OMZ. The region where average dFe concentrations are sensitive to variations in ENSO is confined to a subsurface layer at depths between 50-150 m, particularly in the narrow coastal region within 50 km of the coastline. Subsurface dFe concentrations were generally low during El Niño events (0.7-15.4 nmol L-1) and relatively high with a wider range of variability during the cold ENSO phase (1.1-52.1 nmol L-1). Inverse relationships between wind speed and surface/subsurface dFe were evident. In the subsurface layer, this may be attributable to enhanced dFe offshore transport along isopycnals when upwelling-favorable winds relax in accordance with previously outlined theories. Surface layer (〈40 m) dFe variability was likely associated with a dilution and/or oxidation effect depending on the strength of wind driven water column mixing. Upwelling brings macronutrient-rich water into the euphotic zone, but its intensity had a limited impact on upper layer dFe concentrations possibly due to the influence of an onshore geostrophic flow. Interannual variability in surface chlorophyll-a (Chl-a) was found to correlate with dFe concentration in the offshore zone of northern Peru. This is consistent with bioassay experiments and climatological residual nitrate concentrations which both indicate proximal Fe limitation of phytoplankton growth over and beyond the northern Peruvian shelf. Overall, our work highlights the importance of physical factors driving short-term variations in Fe availability in one of the world’s most economically important fishery regions and suggests that, despite pronounced spatial and temporal variability in dFe concentrations, the ENSO phase has an impact on dFe availability.
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  • 40
    Publication Date: 2024-03-22
    Description: Within the context of climate change, coastal vegetated ecosystems have the capacity for long-term carbon storage. Blue carbon refers to such carbon trapped in the oceans and coastal shelf seas. These ecosystems are under anthropogenic pressure and, to help these ecosystems to thrive and realize their carbon storage potentials, interventions require acceptance from society, in general, and adjacent coastal communities, in particular. Through a random street survey along the German coasts in 2022, quantitative and qualitative data were collected from more than 200 participants. A questionnaire comprising 50 open and closed questions was designed to assess the status quo of German coastal residents’ norms and values concerning blue carbon ecosystems. Focus was put on nature conservation and climate change perceptions. The survey results reveal that most residents along the German coast valued nature conservation while idealizing nature that is seen as “untouched” by humans. Responses regarding active interventions to improve coastal ecosystem services were diverse. Blue carbon strategies are likely to operate within this area of tension. Most respondents were aware of climate change as a threat to their home region and were in favor of an increase in action against climate change there. The respondents were familiar with CO 2 reduction and avoidance strategies. However, they were less aware of measures to remove atmospheric CO 2 and the potential of storing CO 2 in ecosystems beyond afforestation measures. Due to a lack of knowledge, no consolidated public opinions on blue carbon in coastal vegetated ecosystems could be identified, blurring societal acceptance of blue carbon strategies. While these ecosystems are particularly vulnerable to human disturbance, long-term carbon storage is essential for blue carbon. Therefore, the individual acceptance of interventions from people living in close proximity to intervention sites is key for sustained success. The present article concludes that there are possibilities to co-create knowledge and acceptance as prerequisites for blue carbon interventions to possibly become efficacious.
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  • 41
    Publication Date: 2024-03-22
    Description: Underwater image restoration has been a challenging problem for decades since the advent of underwater photography. Most solutions focus on shallow water scenarios, where the scene is uniformly illuminated by the sunlight. However, the vast majority of uncharted underwater terrain is located beyond 200 meters depth where natural light is scarce and artificial illumination is needed. In such cases, light sources co-moving with the camera, dynamically change the scene appearance, which make shallow water restoration methods inadequate. In particular for multi-light source systems (composed of dozens of LEDs nowadays), calibrating each light is time-consuming, error-prone and tedious, and we observe that only the integrated illumination within the viewing volume of the camera is critical, rather than the individual light sources. The key idea of this paper is therefore to exploit the appearance changes of objects or the seafloor, when traversing the viewing frustum of the camera. Through new constraints assuming Lambertian surfaces, corresponding image pixels constrain the light field in front of the camera, and for each voxel a signal factor and a backscatter value are stored in a volumetric grid that can be used for very efficient image restoration of camera-light platforms, which facilitates consistently texturing large 3D models and maps that would otherwise be dominated by lighting and medium artifacts. To validate the effectiveness of our approach, we conducted extensive experiments on simulated and real-world datasets. The results of these experiments demonstrate the robustness of our approach in restoring the true albedo of objects, while mitigating the influence of lighting and medium effects. Furthermore, we demonstrate our approach can be readily extended to other scenarios, including in-air imaging with artificial illumination or other similar cases.
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  • 42
    Publication Date: 2024-03-26
    Description: This review has been undertaken to understand the effectiveness of ocean acidification on oceanic micronutrient metal cycles (iron, copper and zinc) and its potential impacts on marine biota. Ocean acidification will slow down the oxidation of Fe(II) thereby retarding Fe(III) formation and subsequent hydrolysis/precipitation leading to an increase in iron bioavailability. Further, the increased primary production sustains enzymatic bacteria assisted Fe(III) reduction and subsequently the binding of weaker ligands favours the dissociation of free Fe(II) ions, thus increasing the bioavailability. The increasing pCO2 condition increases the bioavailability of copper ions by decreasing the availability of free CO32− ligand concentration. The strong complexation by dissolved organic matter may decrease the bioavailable iron and zinc ion concentration. Since ocean acidification affects the bioavailability of essential metals, studies on the uptake rates of these elements by phytoplankton should be carried out to reveal the future scenario and its effect on natural environment.
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  • 43
    Publication Date: 2024-03-25
    Description: The impact of oxygen on the preservation of organic matter in marine surface sediments is still controversial. We revisited this long-standing debate by determining the burial efficiency of sedimentary organic matter in the Black Sea, the largest anoxic and euxinic basin in the modern ocean. Surface sediments were sampled in the Danube paleodelta on the northwestern margin of the Black Sea at 420–1550 m water depth. Steady-state modeling of solid species (particulate organic carbon and nitrogen) and solutes (ammonium, sulfate, and total alkalinity) in sediments was performed to quantify rates of mass accumulation, particulate organic matter (POM) degradation, and POM burial. We develop a novel analytical model to quantify these rates applying an inverse modelling approach to down core data accounting for molecular diffusion, sediment burial and compaction. Our model results indicate that 56.7 ± 6.6 % of the particulate organic matter deposited in the study area is not degraded in surface sediments but accumulates below 10 cm sediment depth. This burial efficiency is substantially higher than those previously derived for seafloor areas underlying oxygenated bottom waters. Hence, our study confirms previous studies showing that euxinic bottom water conditions promote the preservation of particulate organic matter in marine sediments.
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  • 44
    Publication Date: 2024-03-25
    Description: The TetraEther indeX of 86 carbon atoms (TEX86) is widely used as a proxy to reconstruct past sea surface temperatures. Most current applications of TEX86 are primarily based on analyzing the composition of isoprenoid glycerol dialkyl glycerol tetraethers (isoGDGTs) that comprise TEX86 in sediments, with the assumption that the sedimentary isoGDGTs are mainly derived from the surface mixed layer. Here we report on the variations in the isoGDGT distribution, archaeal abundance and community through the water column of the Western Pacific Ocean, directly testing the export depth of isoGDGTs and constraining the temperature records of TEX86. Our data show that maximum isoGDGT concentrations occurred in subsurface waters (150–200 m) with maximum archaeal abundances. The ratio between isoGDGTs bearing 2 vs. 3 cyclopentane moieties, i.e. [2/3] ratio, increased with depth, which is likely related to the shift of the archaeal community from Ca. Nitrosopelagicus-dominance to norank_f__Nitrosopumilaceae-dominance. Models based on the [2/3] ratios in the water column predicted an average export depth of isoGDGTs to sediments of around 150–200 m, consistent with the robust relationship between the compiled sedimentary TEX86 and the annual mean subsurface temperature. Taken together, our findings support that TEX86 records subsurface rather than surface temperatures in the open ocean.
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  • 45
    Publication Date: 2024-03-25
    Description: Metaorganism research contributes substantially to our understanding of the interaction between microbes and their hosts, as well as their co-evolution. Most research is currently focused on the bacterial community, while archaea often remain at the sidelines of metaorganism-related research. Here, we describe the archaeome of a total of eleven classical and emerging multicellular model organisms across the phylogenetic tree of life. To determine the microbial community composition of each host, we utilized a combination of archaea and bacteria-specific 16S rRNA gene amplicons. Members of the two prokaryotic domains were described regarding their community composition, diversity, and richness in each multicellular host. Moreover, association with specific hosts and possible interaction partners between the bacterial and archaeal communities were determined for the marine models. Our data show that the archaeome in marine hosts predominantly consists of Nitrosopumilaceae and Nanoarchaeota, which represent keystone taxa among the porifera. The presence of an archaeome in the terrestrial hosts varies substantially. With respect to abundant archaeal taxa, they harbor a higher proportion of methanoarchaea over the aquatic environment. We find that the archaeal community is much less diverse than its bacterial counterpart. Archaeal amplicon sequence variants are usually host-specific, suggesting adaptation through co-evolution with the host. While bacterial richness was higher in the aquatic than the terrestrial hosts, a significant difference in diversity and richness between these groups could not be observed in the archaeal dataset. Our data show a large proportion of unclassifiable archaeal taxa, highlighting the need for improved cultivation efforts and expanded databases.
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  • 46
  • 47
    Publication Date: 2024-03-25
    Description: The ocean region along the latitude of 40oS in the South Atlantic, characterized by enhanced primary productivity, forms a transition zone between the nutrient replete but iron depleted Southern Ocean, and the nitrate and iron depleted Subtropical Gyre. Here, we present distributions of nutrient-type dissolved and particulate trace metals (dTMs and pTMs) including cadmium (Cd), nickel (Ni), copper (Cu), and zinc (Zn) in the South Atlantic from the GEOTRACES GA10 cruises. Phytoplankton uptake, riverine and atmospheric inputs shaped dTM and pTM concentrations in surface waters (dCd 27.8±36.0 pmol kg-1, n=222; dCu 0.732±0.429 nmol kg-1, n=222; dNi 3.38±0.52 nmol kg-1, n=219; dZn 0.332±0.398 nmol kg-1, n=214). Subsurface nutrients and dTMs (dCd 563±184 pmol kg-1, n=335; dCu 1.819±0.773 nmol kg-1, n=334; dNi 6.19±1.06 nmol kg-1, n=330; dZn 3.71±2.10 nmol kg-1, n=333) were controlled by the mixing of Antarctic origin waters and North Atlantic Deep Waters (NADW) with negligible contributions from local remineralization. Dissolved and particulate TMs in the Argentine Basin showed elevated concentrations towards the seafloor because of benthic inputs. Direct hydrothermal inputs of dTMs and pTMs to deep waters were not observed along the transect. The Cd-Cu-Zn-phosphate stoichiometries of Antarctic origin waters were set by a combination of dynamic physical circulation and preferential uptake of Cd, Cu, and Zn relative to phosphate in surface waters because of a dominance by diatoms in the Southern Ocean. Water mass mixing subsequently produced convoluted dCu-P and dZn-P relationships and apparent linear dCd-P and dNi-P relationships in the South Atlantic. More importantly, endmember characteristics of Antarctic waters and NADW are largely fixed in their formation regions in high latitude oceans. Therefore, the highly dynamic high latitude oceans are key regions that supply nutrients and TMs at specific ratios to low latitude oceans via the thermohaline circulation. Changes to processes in the high latitude oceans may have consequences for marine primary productivity downstream, and hence the global carbon cycle.
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  • 48
    Publication Date: 2024-03-25
    Description: Highlights • Investigation into the potential of Porites microatolls for SST reconstruction. • Comparison between recent and more conventional coral paleoclimatology methods. • Application of Srsingle bondU and Li/Mg paleothermometer. • Accuracy and reproducibility of Sr/Ca proved to be the most suitable proxy for SST reconstruction. Abstract Massive dome-shaped coral Porites are the predominant choice for paleoclimate studies due to their consistent and reliable growth. When growing close to sea level, they become limited in their vertical growth and form so-called ‘microatolls’. Microatolls have not yet been extensively explored for paleoclimate reconstruction. Here, we investigate how reliable modern Porites microatolls are against empirical sea-surface temperature using Sr/Ca, δ18O, Li/Mg and Srsingle bondU paleothermometry methods on samples from the Society Islands, French Polynesia. Our results show Sr/Ca ratios have the lowest Standard Error of the Inverse Prediction (SEIP) at 0.415 °C (N = 41) with a calibration of Sr/Ca (mmol mol−1) = −0.082 ± 0.006 SST (°C) + 11.256 ± 0.170 and with high reproducibility across multiple corals. The reproducibility of δ18O was less good, with SEIP increasing to 0.829 °C (N = 41). Considering methods directly from the literature, Li/Mg ratio empirically corrected for Sr/Ca had the best balance between bias and precision where no local calibration could be available. This study independently evaluates and confirms the suitability of Porites microatolls from well-flushed environments for paleoclimate studies. Fossil dome-shaped Porites grow anywhere between near-surface and roughly 20 m depths which inherently incorporates uncertainty into any sea surface temperature reconstruction. This uncertainty is significantly reduced for microatolls due to their well-constrained bathymetry. The study represents a fundamental step in paleoclimate research targeting consistently near the water-air interface bringing reliability and, especially when combined with their ability to reconstruct past sea-level changes, microatolls have the potential to be central for future paleoenvironmental studies.
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  • 49
    Publication Date: 2024-04-03
    Description: Highlights • Present day infiltration conditions in an monsoonal environment are studied. • Noble gas concentrations in groundwater are fixed near the soil surface. • Noble gas temperatures represent seasonal infiltration conditions in the monsoon. • Holocene and modern infiltration conditions are quite similar in southern Oman. Abstract Comparing directly measured soil temperatures with noble gas recharge temperatures (NGTs) inferred from noble gas concentrations indicates that the infiltrating soil water equilibrates with soil air near the soil surface during the rainy season. Therefore, NGTs of groundwater recently recharged by the Indian Summer Monsoon (ISM) in the Dhofar Mountains in southern Oman reflect the soil temperatures of the 3-month period and do not represent an annual mean. This finding highlights the need to account for seasonality when interpreting NGT data in regions with pronounced dry and wet seasons. We extend the observations from the southern flank of the Dhofar Mountains to three wells situated on the northern flank of the Dhofar Mountains. Two of these wells yield water of Holocene age that was recharged by the monsoon, their NGT signals are therefore classified as seasonal. The NGT calculated from a third well for recharge conditions during the Last Glacial Maximum (LGM), when the ISM was absent, is approximately 3 °C lower than that of the two Holocene wells. The lower LGM noble gas temperature corresponds well with the lower annual Sea Surface Temperature (SST) in the nearby Arabian Sea. NGTs from published studies from northern Oman are 1–3 °C higher when compared with our data of the same period in the southern Oman. We explain this regional difference of reconstructed temperatures for the LGM and Holocene groundwater with a more continental climatic influence on the infiltration conditions further to the north. The published NGTs from northern Oman show a large temperature difference between the late Holocene and the LGM. In view of our finding of seasonal NGT signals under monsoonal climate, part of this difference may reflect a change in the precipitation regime rather than in air temperature.
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  • 50
    Publication Date: 2024-04-03
    Description: Highlights • This study simulates the sedimentation-driven development of multiple stacked BSRs in the Danube paleo-delta, Black Sea. • Formation of multiple BSRs in the Black Sea is controlled by the sequence of sedimentation events of the levees induced by sea-level changes. • Kinetics of phase transitions plays a key role in the coexistence, location, and timing of the multiple BSRs. • Development of multiple stacked BSRs is possible only under a narrow range of parameters, unique for the Danube delta setting. Abstract The gas hydrate stability zone (GHSZ) is defined by pressure-temperature-salinity (pTS) constraints of natural gas hydrate (GH) system. It refers to a depth interval which usually extends several hundred meters into the sediment column at sufficient water depths. The lower boundary of the GHSZ often coincides in seismic reflection data with a bottom simulating reflector (BSR), which indicates the transition between the underlying free gas and the overlying no-free gas zone at the thermodynamic stability boundary. The GHSZ in geological systems is dynamic and can shift in response to sedimentation processes and/or changes in environmental conditions such as bottom water temperatures, hydrostatic pressure, and water salinity. The appearance of multiple BSRs has been interpreted as remnants of former GHSZ shifts which have persisted over geological timescales. In this study, we numerically simulate the sedimentation-driven development of multiple stacked BSRs in the Danube deep-sea fan in the Black Sea. We show that in this dynamic sediment depositional regime sufficient amounts of residual gas remain trapped in the former GHSZ, given sufficiently high initial gas hydrate saturations, so that paleo-BSRs could persist over long time scales (similar to 300 kyr). In particular, the formation and persistence of multiple BSRs in the Danube Delta is controlled by the sequence of sedimentation events of the levees induced by sea-level change. The kinetics of methane phase transitions between gas hydrate, dissolved methane, and free gas plays a key role in the coexistence, location and timing of the multiple BSRs. Thus, For a given permeability, distinct multiple BSRs appear only for a narrow range of GH formation (10(-14) 〈 k(f) [mol/m(2) Pa s] 〈= 10(-12)) and dissociation rates (10(-16) 〈 k(d) [mol/m(2) Pa s] 〈 10(-14)).
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  • 51
    Publication Date: 2024-04-03
    Description: Multiple stressors often act concomitantly on ecosystems but detection of species responses follows the “single species-single driver” strategy, and cumulative impacts are seldom considered. During 1990–2010, multiple perturbations in the Caspian Sea, led to the decline of kilka, sturgeon and Caspian seal populations. Specific causes for their collapse were identified but a cumulative assessment has never been carried out. Using loop analysis, a qualitative modelling technique suitable in poor-data contexts, we show how multiple drivers can be combined to assess their cumulative impact. We confirm that the decline of kilka, sturgeon and Caspian seal populations is compatible with a net effect of the concomitant perturbations. Kilkas collapse was certainly due to the outburst of M. leidyi and overfishing. In addition, the excess nutrient might have conspired to reduce these populations. The interplay between concurrent drivers produces trade-offs between opposite effects and ecosystem management must face this challenge
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  • 52
    Publication Date: 2024-04-03
    Description: Sediment fluxes to the seafloor govern the fate of elements and compounds in the ocean and serve as a prerequisite for research on elemental cycling, benthic processes and sediment management strategies. To quantify these fluxes over seafloor areas, it is necessary to scale up sediment mass accumulation rates (MAR) obtained from multiple sample stations. Conventional methods for spatial upscaling involve averaging of data or spatial interpolation. However, these approaches may not be sufficiently precise to account for spatial variations of MAR, leading to poorly constrained regional sediment budgets. Here, we utilize a machine learning approach to scale up porosity and 210 Pb data from 145 and 65 stations, respectively, in the Skagerrak. The models predict the spatial distributions by considering several predictor variables that are assumed to control porosity and 210 Pb rain rates. The spatial distribution of MAR is based on the predicted porosity and existing sedimentation rate data. Our findings reveal highest MAR and 210 Pb rain rates to occur in two parallel belt structures that align with the general circulation pattern in the Skagerrak. While high 210 Pb rain rates occur in intermediate water depths, the belt of high MAR is situated closer to the coastlines due to lower porosities at shallow water depths. Based on the spatial distributions, we calculate a total MAR of 34.7 Mt yr -1 and a 210 Pb rain rate of 4.7 · 10 14 dpm yr -1 . By comparing atmospheric to total 210 Pb rain rates, we further estimate that 24% of the 210 Pb originates from the local atmospheric input, with the remaining 76% being transported laterally into the Skagerrak. The updated MAR in the Skagerrak is combined with literature data on other major sediment sources and sinks to present a tentative sediment budget for the North Sea, which reveals an imbalance with sediment outputs exceeding the inputs. Substantial uncertainties in the revised Skagerrak MAR and the literature data might close this imbalance. However, we further hypothesize that previous estimates of suspended sediment inputs into the North Sea might have been underestimated, considering recently revised and elevated estimates on coastal erosion rates in the surrounding region of the North Sea.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 53
    Publication Date: 2024-04-03
    Description: Highlights • Four rhyolitic explosive eruption events were distinguished from 13.1 Ma to 11.6 Ma. • Silicic volcanism occurred at termination of subduction in a thinning lithosphere. • Rhyolites show extreme magma differentiation and reduced-dry character. • Zircon trace element and Hf isotope fingerprint is an effective correlation tool. Abstract The Tokaj Mts. volcanism occurred in a thinning continental lithosphere regime at the final stage of the subduction process. Using high-precision zircon U-Pb dating, four major explosive eruption events were distinguished. Among them the 13.1 Ma Sátoraljaújhely and the 12.0 Ma Szerencs eruptions could have yielded large amount of volcanic material (possibly 〉 100 km3) and they were associated with caldera collapse as shown by the several hundred-metre-thick pyroclastic deposits and the long (〉100 km) runout pyroclastic flow in case of the 13.1 Ma eruption. The 12.3 Ma Hegyköz and the 11.6 Ma Vizsoly eruptions were relatively smaller. The volcanic products can be readily distinguished by zircon and glass trace elements and trace element ratios, which can be used for fingerprinting and to correlate with distal deposits. The Rb, Ba, Sr content and strong negative Eu-anomaly of the glasses reflect extreme crystal fractionation, particularly for the Szerencs rhyolitic magma. The silicic volcanic products of the Tokaj Mts. show compositional similarities with the so-called ‘dry–reduced–hot’ rhyolite type consistent with an origin in an extensional environment, where the primary magmas were formed by near-adiabatic decompression melting in the mantle with subordinate fluid flux. In contrast, some of the older Bükkalja rhyolitic magmas evolved via more hydrous evolutionary paths, where amphibole played a role in the control of the trace element budget. The significant increase of zircon ε Hf values from −8.8 to + 0.2 in the rhyolitic pyroclastic rocks of Tokaj Mts. with time implies that mantle-derived magmas became more dominant. This can be explained by the specific tectonic setting, i.e. the final stage of subduction when the descending subducted slab became almost vertical, which exerted a pull in the upper lithosphere leading to thinning and accelerated subsidence as well as asthenospheric mantle flow just before the slab detachment.
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  • 54
    Publication Date: 2024-04-09
    Description: The overriding physicochemical controls in seawater discussed here are the chemical composition and the state of master variables including temperature, pressure, salinity, pH and redox status. Dissolved Organic Matter also plays a major role, but since its properties are not sufficiently well quantified it is described as an emergent master variable at this stage. The theoretical basis for the treatment of equilibrium chemistry and kinetics is presented, together with projections of the future development of seawater chemistry resulting from climate change. Key points • Composition of seawater • Master variables (temperature, pressure, pH, oxygen/redox state) • The role of Dissolved Organic Matter • Equilibrium chemistry • Kinetics • The consequences of ongoing global changes
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  • 55
  • 56
    Publication Date: 2024-04-09
    Description: Despite management efforts, anthropogenic nutrient enrichments continue to enhance phytoplankton blooms worldwide. Release of nitrogen and phosphorus compounds not only provides surplus of nutrients but also disbalances their stoichiometry. Declines in the relative availability of dissolved silicon might induce limitation in diatoms, major primary producers with silicified shells. We studied experimentally how nutrient enrichment and resulting decline in dissolved silicon to nitrogen ratios (Si:N) affect the structure and functioning of natural plankton communities. Nitrate was added to create a range of Si:N ratios and phosphate was supplied in Redfield ratio to nitrogen. We also manipulated copepod abundance to understand the top-down effects on communities experiencing nutrient enrichment. Nitrogen and phosphorus additions resulted in a steep phytoplankton biomass increase, followed by a post-bloom decline. Phytoplankton bloom biomass was higher in high nitrogen treatments but during the post-bloom period this trend switched. Biomass was sustained longer in high Si:N treatments, indicating that silicon limitation terminates the bloom. Many diatom species did not benefit from nitrogen and phosphorus enrichment and diatom dominance ceased below Si:N of 0.4:1. Under high grazing pressure, silicate was taken up faster suggesting that silicification is important in diatom defense. Copepods shaped plankton communities via feeding on dinoflagellates, chlorophytes and the diatom Skeletonema costatum but there was no significant effect of nitrogen and phosphorus enrichment on copepod abundance. Our results, combined with previous studies, show that while nutrient concentrations define the total phytoplankton bloom biomass, resource ratios are important in sustaining biomass and determining community structure and composition.
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  • 57
    Publication Date: 2024-04-09
    Description: Highlights • Developed an innovative weighted outlier detection function that adaptively selects the best outlier detection technique, markedly improving precision and robustness in multibeam echosounder data analysis. • Demonstrated superior performance of the weighted function over traditional methods, achieving higher precision, recall, and F1 scores, pivotal for accurate seafloor mapping. • Enhanced data quality for geoscientific applications by effectively identifying and removing outliers without introducing data voids, preserving the integrity of multibeam sonar data. • The function’s significance extends to supporting sustainable environmental and resource management practices through improved accuracy in seabed mapping. • Discussed the adaptability of the method to various outlier patterns and its limitations, highlighting the need for further research and validation across different marine environments and data types. Abstract Multibeam sonar data are a valuable tool for seafloor mapping and geological studies. However, the presence of outliers in multibeam data can distort the results of analyses and reduce the accuracy of seafloor maps. In this paper, we define a weighting function based on the performance of various outlier detection techniques (OTDs) for detecting outliers in multibeam data, which calculates an outlier probability score for each sounding. Our results show that each OTD has its own strengths and weaknesses, and that a combination of outlier detection techniques is promising to improve reproducibility, explainability and the accuracy of the detection process. To address the challenge of detecting outliers in multibeam data, we propose a weighted outlier detection function that outperforms individual outlier detection techniques in terms of precision, recall and F1 scores by considering their strengths and combining them in a way that accounts for variations in the data. The function detects various types of outliers with high precision and recall values, resulting in valuable improvements in outlier detection performance for multibeam data. Overall, our proposed workflow has the potential to significantly improve the way multibeam data cleaning is performed, with the weighted outlier detection function being applied first, detecting most of the outlier automatically, followed by a domain-expert review of a small group of soundings whose automatic outlier labelling is not unequivocal.
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  • 58
    Publication Date: 2024-04-10
    Description: Transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP), two prominent classes of gel−like particles in the ocean primarily produced by phytoplankton, play crucial roles in ecological and biogeochemical processes, influencing microbial nutrition, growth, and particle aggregation. The distribution of these particles is intricately linked to the spatiotemporal dynamics of phytoplankton. Mesoscale cyclonic eddies (CEs) are known to stimulate phytoplankton growth and influence particle transport, but their effects on TEP and CSP remain to be determined. In the Eastern Tropical North Atlantic (ETNA), we examined three CEs: one off the Mauritanian coast during summer (Mau), one offshore during winter (Sal), and another near Brava island during winter. Mau and Brava CEs were in their intensification/maturity phase, while the Sal CE was in its decay phase. Both TEP and CSP concentrations correlated with primary productivity, but TEP increased with chlorophyll−a concentration, whereas elevated CSP coincided also with the highest abundance of pico−nanophytoplankton (〈20 µm), mainly Synechococcus. Both gels exhibited a positive correlation with bacterial biomass production, indicating their consumption by heterotrophic bacteria. TEP total area in the epipelagic waters of all CEs (Mau, Brava, and Sal) was elevated compared to surrounding waters, with on average 4, 2.5, and 1.6−fold higher values, respectively. However, no significant difference in TEP size distribution was observed within any CEs and their surroundings. Similarly, CSP total area increased in the epipelagic waters of Mau and Brava CEs, with on average 5 and 2.4−fold higher values, respectively, compared to surrounding waters. CSP particles were notably larger in these two eddies, while the Sal CE showed no significant difference from surrounding waters in CSP abundance and size. Overall, TEP and CSP exhibited distinct responses to CEs, with increased concentrations during their intensification/maturation stage and remineralization dominating during their decaying stage.
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  • 59
    Publication Date: 2024-04-10
    Description: Introduction Ecosystem engineers play a pivotal role in shaping habitats through their activities and presence. In shallow Baltic waters, seagrasses, patch-forming mussels, and infaunal clams modify soft bottom habitats, impacting benthic community structure. While the individual effects of these ecosystem engineers are well studied, interactions among co-occurring engineers are poorly understood.Methods We conducted a mesocosm experiment to assess the independent and combined impacts of seagrass (Zostera marina), epifaunal mussels (Mytilus spp.), and infaunal clams (Macoma balthica) on invertebrate colonization in soft sediments.Results Our findings reveal significant engineer-driven alterations in macrofaunal community structure. Combined engineer effects diverged from individual impacts, indicating potential synergies or antagonisms in sediment (re)colonization. Notably, a higher number of engineer species positively affected the diversity of settled macrofauna, with the lowest macrofaunal abundance and biomass but the highest Shannon diversity found in the presence of all three engineers.Discussion Results suggest that seagrass, mussels, and clams influence benthos through larval settlement and sediment biogeochemistry, providing insights into the distinct roles of habitat-forming organisms in shaping the benthic communities in coastal ecosystems of the Baltic Sea.
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  • 60
    Publication Date: 2024-04-10
    Description: Trace metals (TMs) manganese (Mn), cobalt (Co), and aluminium (Al) have important geochemical and biological roles in the ocean. Here, we present full depth profiles of dissolved (d) and particulate Al, Mn, and Co along the latitude of 40 °S in the South Atlantic Ocean from the GEOTRACES GA10 cruises that operated in austral spring 2010 and summer 2011. The region is characterized by enhanced primary productivity and forms a key transition zone between the Southern Ocean and South Atlantic Subtropical Gyre. The mean concentrations of dAl, dCo, and dMn (±standard deviation) were 3.36 ± 2.65 nmol kg−1, 35.3 ± 17.6 pmol kg−1, and 0.624 ± 1.08 nmol kg−1, respectively. Their distributions in surface waters were determined by external sources and complex internal biogeochemical processes. Specifically, surface ocean dCo was controlled by the interplay between phytoplankton uptake, remineralization and external inputs; dMn was likely determined by the formation and photoreduction of Mn-oxides; and dAl was supplied by atmospheric deposition and removed by scavenging onto particles. Fluvial and sedimentary inputs near the Rio de La Plata estuary and benthic sources from the Agulhas Bank resulted in elevated dTM concentrations in near-shore surface waters. These externally sourced dTMs were effectively delivered to the open ocean by offshore diffusion and/or advection, and potentially facilitated enhanced primary productivity along the transect. The distributions of dTMs at depth were predominantly controlled by the mixing of North Atlantic Deep Water (NADW) and waters of Antarctic origin (e.g., Upper Circumpolar Water (UCDW) and Antarctic Bottom Water (AABW)). The calculated endmember concentrations of dAl and dCo in NADW showed minor decreases in the SASTG following north–south transport, suggesting removal rates of 0.064 nM/year and 0.035–0.075 pM/year, respectively. The endmember concentration of dCo in AABW was maintained at ∼30 pmol kg−1 without evidence for scavenging removal in the Southern Ocean and SASTG (time frame 〉400 years). The concentrations of dMn in NADW and AABW were between 0.1 and 0.16 nmol kg−1, and any elevated dMn concentrations were ascribed to local external inputs (e.g., from sediments in the Argentine Basin and hydrothermal activity near the Mid-Atlantic Ridge). Hence, four controlling factors (sources, internal cycling, water mass mixing and time) need to be considered when assessing TM distributions in the global ocean, even for TMs that are vulnerable to scavenging removal processes. Because the deep waters formed in high latitude oceans are crucial components of the global thermohaline overturning system, any processes (e.g., glacier melting, upwelling and sinking, and biological activity) that impact the preformed dTM concentrations in high latitude oceans will determine the downstream dTM distributions. Therefore, the sources and sinks of TMs and associated biological activity in high latitude oceans could engender basin to global scale impacts on seawater distributions of Al, Co, and Mn and their stoichiometric relationships with macronutrients, and the global biogeochemical cycles of these scavenged-type TMs.
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  • 61
    Publication Date: 2024-04-15
    Description: Fishes occur in a wider range of habitats than any other vertebrate or invertebrate group, from the upper reaches of streams in high mountain ranges to the mouths of temperate and tropical rivers, and from the intertidal zone to the ocean's abyss. Fish grow in size, spawn and die, either from natural causes (predation, diseases, ageing) or from being caught in fishing nets if the population is exploited. These dynamical processes are expressed with mathematical equations and are used in population models to estimate fisheries reference points (stock assessment), which in turn provide the basis for fisheries management. Fish populations subjected to fisheries exploitation are called fish “stocks”. Fishing has been increasingly affecting fish stocks and ecosystems both directly and indirectly, and along with the human-induced climate change they pose major threats to fish biodiversity worldwide. Using the available data stored in local or global databases to assess the status of all stocks, even the data-poor fish stocks, and following an ecosystem approach to fisheries management that incorporates effort reduction through marine protected areas, may contribute to the sustainable exploitation of fisheries resources.
    Type: Book chapter , NonPeerReviewed
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  • 62
    Publication Date: 2024-04-15
    Description: Cadmium (Cd) has a nutrient-like distribution in the ocean, similar to the macronutrient phosphate. Significant isotope fractionation induced by the biological cycling of Cd makes it a potential tracer for nutrients and productivity. However, the Cd flux and Cd isotope composition of marine sediments can also be influenced by local redox conditions and partial remineralization of organically hosted Cd. These confounding factors are under-constrained and render it challenging to use Cd as a reliable paleoproxy. To understand the relative importance of each of these processes, we examined the Cd isotope systematics of 69 modern sediments deposited across a wide range of environments. We complement these data with four profiles of particulate Cd isotope compositions from the Southern Ocean. We report three main results. First, we show that the sedimentary flux of Cd is tightly coupled to that of organic matter. Second, most Cd burial occurs in regions with some bottom-water oxygen, and the flux of CdS to anoxic regions is, globally, minor. Finally, we find that remineralization can substantially modify sedimentary Cd isotope compositions, though it is challenging to relate pelagic and sedimentary processes. For example, we find that the relationship between sedimentary Cd isotope compositions and surface seawater [Cd] is the reverse of that predicted by isotope reactor models. Likewise, sedimentary Cd isotope compositions are anti-correlated with bottom-water oxygen. While this pattern is consistent with preferential remineralization of isotopically heavy Cd, profiles of marine particulate matter reveal the reverse, whereby the Cd isotope composition of large particles, which are most likely to reach the seafloor, becomes increasingly ‘heavy’ with depth. These results highlight how productivity, redox, and remineralization all influence the flux and isotope composition of Cd to marine sediments. While our study suggests that there is no simple way to relate sedimentary Cd isotopes to surface nutrient utilization, our data point toward several potential controls that could form the basis of novel proxies for local redox conditions and remineralization.
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  • 63
    Publication Date: 2024-04-15
    Description: Deoxygenation is tied to organic carbon (Corg) supply and utilization in marine systems. Under oxygen-depletion, bacteria maintain respiration using alternative electron acceptors such as nitrate. Since anaerobic respiration's energy yield is lower, Corg remineralization may be reduced and its residence time increased. We investigated the influence of oxygen and alternative electron acceptors' availability on Corg cycling by heterotrophic bacteria during a continuous culture experiment with Shewanella baltica, a facultative anaerobic γ-Proteobacteria in the Baltic Sea. We tested six different oxygen levels, from suboxic (〈5 µmol L-1 ) to fully oxic conditions, using media (salinity=14 g L-1 ) supplied with high (HighN) or low (LowN) inorganic nitrogen concentrations relative to glucose as labile Corg source. Our results show that suboxia limited DOC (glucose) uptake and cell growth only under LowN, while higher availability of alternative electron acceptors seemingly compensated oxygen limitation under HighN. N-loss was observed under suboxia in both nitrogen treatments. Under HighN, N-loss was highest and a C:N loss ratio of ~2.0 indicated that Corg was remineralized via denitrification. Under LowN, the C:N loss ratio under suboxia was higher (~5.5), suggesting dominance of other anaerobic respiration pathways, such as dissimilatory nitrate reduction to ammonium (DNRA). Bacterial growth efficiency was independent of oxygen concentration but higher under LowN (34±3.0%) than HighN (26±1.6%). Oxygen concentration also affected dissolved organic matter (DOM) cycling. Under oxic conditions, the release of dissolved combined carbohydrates was enhanced, and the amino acid-based degradation index (DI) pointed to more diagenetically altered DOM. Our results suggest bacterial Corg uptake in low-oxygen systems dominated by S. baltica can be limited by oxygen but compensated by high nitrate availability. Hence, suboxia diminishes Corg remineralisation only when alternative electron acceptors are lacking. Under high nitrate:Corg supply, denitrification leads to a higher N:C loss ratio, potentially counteracting eutrophication in the long run. Low nitrate:Corg supply may favour other anaerobic respiration pathways like DNRA, which sustains labile nitrogen in the system, potentially intensifying the cycle of eutrophication. Going forward, it will be crucial to establish the validity of our findings for S. baltica in natural systems with diverse organic substrates and microbial consortia.
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  • 64
    Publication Date: 2024-04-15
    Description: As a part of the Scientific Committee on Oceanographic Research (SCOR) Working Group #160 “Analyzing ocean turbulence observations to quantify mixing” (ATOMIX), we have developed recommendations on best practices for estimating the rate of dissipation of kinetic energy, ε, from measurements of turbulence shear using shear probes. The recommendations provided here are platform-independent and cover the conceivable range of dissipation rates in the ocean, seas, and other natural waters. They are applicable to commonly deployed platforms that include vertical profilers, fixed and moored instruments, towed profilers, submarines, self-propelled ocean gliders, and other autonomous underwater vehicles. The procedure for preparing the shear data for spectral estimation is discussed in detail, as are the quality control metrics that should accompany each estimate of ε. The methods are illustrated using a high-quality ‘benchmark’ dataset, while potential pitfalls are demonstrated with a second dataset containing common faults.
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  • 65
    Publication Date: 2024-04-19
    Type: Book chapter , PeerReviewed
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  • 66
    Publication Date: 2024-04-22
    Description: Highlights: • The interactions between vortices in a four-vortex flow field using a rotating water tank. • Driven by the strain field, non-ideal vortices stretch along the centerline, and manifest an asymmetric stretching pattern. • Non-ideal vortices disperse vorticity, accumulate filaments, and exhibit distinctive variations in anti-symmetric vorticity distribution, impacting respective merging efficiency. Abstract: Oceanic vortex merging is an important physical process for the vortex evolution and its impact on marine environment. However, limitation of the in-situ oceanic observational data of vortex merging inhabits its better understanding. This study investigates the interactions between non-ideal vortices in a four-vortex flow field in a rotating tank. We examine the merging stages of anticyclonic vortices, influenced by two other cyclonic vortices and their respective dynamical behaviors and quantify the effects of merging on vortex characteristics. The results indicate a strong shear flow between two counter-rotating vortices, which accelerates the motion of the anticyclonic vortex, while cyclonic ones exhibit greater stability. Subsequently, different stages of non-ideal vortex merging in a co-rotating framework are defined, primarily the encircling stage, rapid approaching stage, and merging vortex stage. In addition, we quantify and compare variations in morphological parameters and anti-symmetric vorticity distribution of non-ideal vortices across these stages. The stretching of vortices primarily occurs along the line connecting their centers due to the strain field exerted by neighboring vortices, resulting in an asymmetric stretching pattern in the interactions among non-ideal vortices. Furthermore, during the merging process, non-ideal vortices disperse vorticity outward and accumulate vortex filaments in the surrounding environment, leading to distinctive variations in anti-symmetric vorticity distribution, affecting their respective merging efficiency.
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  • 67
    Publication Date: 2024-04-22
    Description: In the past three decades, altimeter-based remote sensing has been a widely used system to estimate ocean surface currents. However, it remains a great challenge to effectively resolve scales below ∼100 km at high latitudes and ∼ 300 km at mid-latitudes. In this study, we propose a scheme that utilizes geostrophic equilibrium and surface quasigeostrophy theory (SQG) to improve surface current resolution by incorporating remote sensing sea surface temperature (SST), sea surface height (SSH), and sea surface salinity (SSS) observations. The scheme separately characterizes the larger-scale flows and smaller-scale motions of surface currents. A case study encompassing the Agulhas surface current demonstrates that the smaller-scale motions associated with temperature fronts are well captured by introducing high spatial-temporal resolution SST data. Furthermore, the reconstructed surface current is systemically evaluated by using surface drogued drifters and a Lagrangian synthetic particle tracking tool throughout the South Indian Ocean (SIO) for 2011–2015. Notably, the reconstructed zonal velocity component is closer to the drifter observations than the meridional counterpart and corresponding velocity phase. Regionally, the Antarctic Circumpolar Current (ACC) showcases superior reconstruction performance, with higher skill scores and lower Lagrangian separation distances. However, a relatively large uncertainty is observed around the Agulhas Retroflection (AR) and Greater Agulhas System (GAS), which are linked to complicated regional dynamic regimes. We finally conduct four simulation experiments to explore the effect of different SST products on surface current reconstruction within the subdomain AR. The results indicate the varying potentials of the four evaluated SST products for informing surface current applications. Specifically, the MWIRSST enhances the likelihood of particles reaching the target field, while DMI OI shortens the average deviation distance of the arrived particles.
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  • 68
    Publication Date: 2024-04-22
    Description: Marine imaging studies have unique constraints on the data collected requiring a tool for defining the biological scope to facilitate data discovery, quality evaluation, sharing and reuse. Defining the ‘target population’ is way of scoping biological sampling or observations by setting the pool of organisms to be observed or sampled. It is used in survey design and planning, to determine statistical inference, and is critical for data interpretation and reuse (both images and derived data). We designed a set of attributes for defining and recording the target population in biological studies using marine photography, incorporating ecological and environmental delineation and marine imaging method constraints. We describe how this definition may be altered and recorded at different phases of a project. The set of attributes records the definition of the target population in a structured metadata format to enhance data FAIRness. It is designed as an extension to the image FAIR Digital Objects metadata standard, and we map terms to other biological data standards where possible. This set of attributes serves a need to update ecological metadata to align with new remotely-sensed data, and can be applied to other remotely-sensed ecological image data.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 69
    Publication Date: 2024-04-22
    Description: We carried out measurements of the CO2 system parameters to evaluate the impact of carbonate and nutrients' chemistry on phytoplankton populations in the Gulf of Guinea (GoG). The seasonal variations of the CO2 system parameters (fCO2, DIC, pH and TA) along with nitrates and phosphates were quantified weekly at surface (between 0 and 5 m depth) (5.57 degrees N - 4.57 degrees W) in the GoG from May to December 2020. Seawater pH varied widely during the study period, ranging between 8.10-8.35 pH units; DIC and TA varied between 1810 and 2094 mu mol kg-1, and between 2051 and 2216 mu mol-1 respectively. DIC peaks coincided with the high upwelling period (August and September). For phytoplankton, a total of 60 species were found belonging to four taxonomic phyla: Bacillariophyta, Dinophyta, Chlorophyta and Dictyochophyta. The highest number of phytoplanktonic species were recorded for Bacillariophyta phylum with 36 species (60%). The phylum Dinophyta comprised 22 taxa (36%) and Chlorophyta and Dictyochophyta recorded only one species (2%). The highest specific diversities were observed in August and September with 29 and 26 taxa respectively and the lowest was found in October-November (5 taxa) and December (one taxa). Bacillariophyta and Dinophyta appeared throughout the entire study period. The only species for Chlorophyta phylum appeared in June and July and the Dictyochophyta's one in May, July and August. In general, the physical (SST, SSS) and chemical (TA, DIC, pH) parameters influenced less than 50% of the phytoplankton population in the coastal area of the GoG. Our study shows that Bacillariophyta population grows up when the physicochemical parameters' variability increase.
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  • 70
    Publication Date: 2024-04-26
    Description: The field of oceanography is transitioning from data-poor to data-rich, thanks in part to increased deployment of in-situ platforms and sensors, such as those that instrument the US-funded Ocean Observatories Initiative (OOI). However, generating science-ready data products from these sensors, particularly those making biogeochemical measurements, often requires extensive end-user calibration and validation procedures, which can present a significant barrier. Openly available community-developed and -vetted Best Practices contribute to overcoming such barriers, but collaboratively developing user-friendly Best Practices can be challenging. Here we describe the process undertaken by the NSF-funded OOI Biogeochemical Sensor Data Working Group to develop Best Practices for creating science-ready biogeochemical data products from OOI data, culminating in the publication of the GOOS-endorsed OOI Biogeochemical Sensor Data Best Practices and User Guide. For Best Practices related to ocean observatories, engaging observatory staff is crucial, but having a “user-defined” process ensures the final product addresses user needs. Our process prioritized bringing together a diverse team and creating an inclusive environment where all participants could effectively contribute. Incorporating the perspectives of a wide range of experts and prospective end users through an iterative review process that included “Beta Testers’’ enabled us to produce a final product that combines technical information with a user-friendly structure that illustrates data analysis pipelines via flowcharts and worked examples accompanied by pseudo-code. Our process and its impact on improving the accessibility and utility of the end product provides a roadmap for other groups undertaking similar community-driven activities to develop and disseminate new Ocean Best Practices.
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  • 71
    Publication Date: 2024-04-29
    Description: Highlights • Development of an autonomous DIC analyzer based on Conductometric technique using a cell with 4 hollow brass electrodes. • CO2 extraction from seawater using a gas diffusion cell with a “Tube In A Tube” configuration and a gas permeable membrane. • Formulation of mathematical temperature and salinity correction to determine accurate DIC concentration. • Demonstration of the analyzer performance in the southwest Baltic Sea. Abstract Background The increase in anthropogenic CO2 concentrations in the Earth's atmosphere since the industrial revolution has resulted in an increased uptake of CO2 by the oceans, leading to ocean acidification. Dissolved Inorganic Carbon (DIC) is one of the key variables to characterize the seawater carbonate system. High quality DIC observations at a high spatial-temporal resolution is required to improve our understanding of the marine carbonate system. To meet the requirements, autonomous DIC analyzers are needed which offer a high sampling frequency, are cost-effective and have a low reagent and power consumption. Results We present the development and validation of a novel analyzer for autonomous measurements of DIC in seawater using conductometric detection. The analyzer employs a gas diffusion sequential injection approach in a “Tube In A Tube” configuration that facilitates diffusion of gaseous CO2 from an acidified sample through a gas permeable membrane into a stream of an alkaline solution. The change in conductivity in the alkaline medium is proportional to the DIC concentration of the sample and is measured using a detection cell constructed of 4 hollow brass electrodes. Physical and chemical optimizations of the analyzer yielded a sampling frequency of 4 samples h−1 using sub mL reagent volumes for each measurement. Temperature and salinity effects on DIC measurements were mathematically corrected to increase accuracy. Analytical precision of ±4.9 μmol kg−1 and ±9.7 μmol kg−1 were achieved from measurements of a DIC reference material in the laboratory and during a field deployment in the southwest Baltic Sea, respectively. Significance This study describes a simple, cost-effective, autonomous, on-site benchtop DIC analyzer capable of measuring DIC in seawater at a high temporal resolution as a step towards an underwater DIC sensor. The analyzer is able to measure a wide range of DIC concentrations in both fresh and marine waters. The achieved accuracy and precision offer an excellent opportunity to employ the analyzer for ocean acidification studies and CO2 leakage detection in the context of Carbon Capture and Storage operations.
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  • 72
    Publication Date: 2022-12-22
    Description: This chapter aims at introducing the reader to general concepts about the main forcings of the Mediterranean Sea, in terms of exchanges through the Strait of Gibraltar, and air-sea exchanges of heat, freshwater, and momentum. These forcings are also responsible for the peculiar characteristics of Mediterranean water masses. Therefore, the chapter continues with giving a general explanation on water mass analysis, and then it describes the properties and vertical and horizontal distributions of the main Mediterranean water masses. To conclude, the reader is introduced to the use of other (biogeochemical, and chemical) tracers of water masses, with a focus on the Mediterranean Sea.
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  • 73
    Publication Date: 2023-02-01
    Description: This chapter gives an overview of the general biogeochemistry in the Mediterranean Sea explaining the particularities of the main biogeochemical variables and the physical, biological, and geochemical processes driving their distribution in the main basins of this marginal sea. Each subsection focuses on one essential variable, starting from dissolved oxygen and following inorganic nutrients, dissolved organic carbon and the CO2 system. A brief overview on the utility of those biogeochemical variables to identify water masses is also given. The chapter concludes with a summary of the projections and threats on biogeochemistry in the Mediterranean Sea under different future climate change scenarios.
    Type: Book chapter , NonPeerReviewed
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  • 74
    Publication Date: 2023-02-13
    Type: Article , NonPeerReviewed
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  • 75
    Publication Date: 2023-11-07
    Type: Article , NonPeerReviewed , info:eu-repo/semantics/article
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  • 76
    Publication Date: 2024-01-08
    Description: The United Nations is dedicated to bringing countries together to solve international problems and to shape a better future. One of the greatest challenges facing society today is meeting the population’s basic needs, while protecting the environment, hence the UN Sustainable Development Goals — 17 goals to overcome current and future sustainability challenges. We incorporate the 17 goals into a simplified global socio-ecological model to analyze what actions are necessary to promote a desirable future. We find that the current population size and resource use are not sustainable with any one goal or combination of goals. In the sustainable scenarios described here the global population decreases, while maintaining higher consumption levels. We estimate that sustainability hinges on maintaining an equivalence between natural and agricultural land areas and the human population — approximately 1ha of land per person is necessary to promote human well-being and environmental sustainability. Furthermore, we find that long-term sustainability hinges on changes within the next 50 years and goals that solely target environmental degradation or consumption are too slow to drive sustainability. Social progress is occurring much faster than environmental progress, therefore actions that target shifts in power dynamics, inequality, development and education in lower income countries should be prioritized to maintain ecosystem services and promote well-being. The goals that incorporate a combination of socio-ecological policies (SDGs 3,6,8,9,10,11) promote well-being and sustainability.
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  • 77
    Publication Date: 2024-01-08
    Description: Coral reefs are complex habitats that contain very high biodiversity and provide different ecosystem services. In the Coral Triangle, however, various major benthic components are still understudied. This can limit our understanding of coral reef community dynamics, especially in the presence of a changing climate coupled with local disturbances (e.g., decreased water quality). This study describes the benthic community structure of an ecologically and economically important coral reef system in the central Philippines through characterizing the assemblages of three major components (hard corals, octocorals, and sponges) among sites and stations with varying environmental conditions (i.e., exposure to monsoons, water quality levels). Results reveal significant variations in the mean percentage covers of hard corals, octocorals, and sponges at the site and station levels (ANOVA, p 〈 0.05), with hard corals dominating in Site 1, which is more exposed to the southwest monsoon, and Site 3, which is an embayed and unexposed site with low water quality, while soft corals dominated in Site 2, which is more exposed to the northeast monsoon. Multivariate analyses also revealed significant variations in the benthic community structure at different spatial scales (ANOSIM, p 〈 0.05). Interestingly, even stations within a site had significant variations in community structure, with different taxa being dominant. This study highlights the importance of conducting more detailed analyses of understudied taxa (i.e., octocorals and sponges) during coral reef surveys to improve our understanding of coral reef community dynamics that is very important for management.
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  • 78
    Publication Date: 2024-01-08
    Description: Since net-zero greenhouse gas emissions targets have become a keystone of European and German climate policy, a debate about the need to actively remove carbon dioxide from the atmosphere in addition to drastically reducing emissions has emerged. Although still relatively scarce, empirical studies on the emergence of carbon dioxide removal (CDR) on the political agenda have shown that variations in the constellations and positions of policy-relevant actors play a key role in shaping patterns of CDR policymaking. The German and wider European Union (EU) CDR policy space is emergent, and political actors are just beginning to position themselves. Building on our previous work which established a typology of CDR policy integration patterns and developed a discourse analytical framework for mapping CDR-policy-relevant speaker positions, we present the first fine-grained empirical reconstruction of CDR-policy-relevant actors and their positions in the German context. Our analytical approach aims to improve understanding of patterns in CDR policymaking by showing that on the EU, national, and subnational levels, a multitude of institutional actors may adopt differing positions as the CDR policy space evolves. In addition to identifying fine-grained ‘ideal types’ of positions that policy actors may adopt in the formative phase of German CDR policy, our analysis provides an empirical ‘map’ of CDR policy-relevant actors and explores hypotheses about emerging discourse coalitions and potential conflict cleavages.
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  • 79
    Publication Date: 2024-01-08
    Description: Addressing climate change and reducing greenhouse gas emissions are critical global challenges. As a substantial contributor to emissions, animal-based products are under increasing scrutiny. Animal-free dairy products provide a potential. Although understanding consumer acceptance of these products is crucial, the literature on this topic is scant. This study investigates the perception and acceptance of animal-free dairy among German consumers (N = 1,487) using an online survey with five information treatments (general and topic-specific information about animal-free cheese, gene-modified organisms, animal welfare, environmental concerns, and farmer existence). The acceptance of animal-free dairy was measured by the respondents' willingness to try, substitute, buy, and regularly buy animal-free cheese. Acceptance was found to be comparatively lower than in past studies, although still prevalent among 45.65 % of consumers. Notably, there were significant variances in consumers' perspectives toward animal-free cheese, causing an irregular distribution in their willingness statements. Multi-group analysis using partial least squares structural equation modeling showed that consumer acceptance did not significantly differ between treatment groups. However, individual analysis revealed that the willingness to buy animal-free cheese was positively influenced by perceived benefits and perceived sustainability. Conversely, perceived risks decreased this willingness. Positive attitudes toward farming and knowledge about farming increased perceived risks, while high social trust lowered them. Attitudes toward animal welfare and social trust positively influenced perceived benefits. These findings can be applied to inform and facilitate market introduction strategies of animal-free dairy products for producers and policy makers, providing insights into consumer acceptance of these products in Germany.
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  • 80
    Publication Date: 2024-01-08
    Description: The oceans play a major role in moderating atmospheric CO2 levels. Enhanced CO2 uptake into ocean waters can be achieved by the provision of appropriate cations to the surface ocean, an approach known as ocean alkalinity enhancement (OAE). Here, we present a calcium ion battery approach that enhances alkalinity via electrochemical manipulation of seawater calcium concentrations. We demonstrate the efficacy of this approach using a potassium barium iron cyanide [K2BaFe(CN)6] (PBFC) electrode, a Prussian blue analogue, to move calcium ions from one reservoir of seawater to another. Using material and electrochemical characterization of the Ca2+ ion insertion and expulsion properties of PBFC in synthetic seawater, we determine the repeatability of Ca2+ ion insertion and expulsion from the PBFC electrode. Our analyses prove a 2.75 % increase in seawater alkalinity via the PBFC electrode, which yields 2.64 mg CO2 (0.72 mg C) uptake per liter of seawater. This proof-of-concept method offers a unique, low-cost, energy efficient electrochemical approach for atmospheric carbon dioxide removal that can combine with marine-based renewable energy to enable a new family of effective, scalable climate change solutions.
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  • 81
    Publication Date: 2024-01-08
    Description: Diatoms represent one of the most successful groups of marine phytoplankton and are major contributors to ocean biogeochemical cycling. They have colonized marine, freshwater and ice environments and inhabit all regions of the World’s oceans, from poles to tropics. Their success is underpinned by a remarkable ability to regulate their growth and metabolism during nutrient limitation and to respond rapidly when nutrients are available. This requires precise regulation of membrane transport and nutrient acquisition mechanisms, integration of nutrient sensing mechanisms and coordination of different transport pathways. This review outlines transport mechanisms involved in acquisition of key nutrients (N, C, P, Si, Fe) by marine diatoms, illustrating their complexity, sophistication and multiple levels of control.
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  • 82
    Publication Date: 2024-01-08
    Description: As tropical seagrass meadows decline throughout the tropics, propagule transplantation is being used as an effective restoration method. This technique promotes genetic diversity in the restored seagrass meadows. Although many environmental factors, especially temperature and burial, can influence the success of seed/seedling transplantation success, little is known about these effects on transplanted tropical seagrass propagules. To address this knowledge gap, we conducted a 92-day laboratory incubation experiment to test the effects of representive temperatures (20 °C and 30 °C) and burial status (with and without burial) on germination and seedling growth of the tropical seagrass Enhalus acoroides. Results showed that germination rate was 3-fold higher in the treatment without burial (75%) than in the treatment with burial (25%). The germination success rate in the 30 °C treatment was about two times higher than that of the 20 °C treatment. When burial and temperature were tested in combination, germination success was highest in the 30 °C without burial treatment while the lowest rates were obtained in the 20 °C and burial treatment. Further, the temperature of 30 °C benefited leaf and root growth as well. These results illustrate that burial decreased E. acoroides germination, while high temperature enhanced both germination and seedling growth. Thus, transplantation of E. acoroides propagules for tropical seagrass restoration should be conducted when seawater temperature is warm, and the seeds should be fixed on the sediment surface rather than buried.
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  • 83
    Publication Date: 2024-01-08
    Description: The Southern Ocean is a key region for analyzing environmental drivers that regulate sea-air CO2 exchanges. These CO2 fluxes are influenced by several mesoscale structures, such as meanders, eddies and other mechanisms responsible for energy dissipation. Aiming to better understand sea-air CO2 dynamics in the northern Antarctica Peninsula, we investigated an anticyclonic stationary eddy located south of Clarence Island, in the eastern basin of Bransfield Strait – named the Antarctica Slope Front bifurcation (ASFb) eddy. Physical, chemical and biological data were sampled, and remote sensing measurements taken, in the region during late summer conditions in February 2020. The eddy’s core consisted of cold (0.31 °C), salty (34.38) and carbon-rich (2247 μmol kg−1) waters with dissolved oxygen depletion (337 μmol kg−1). The core retains a mixture of local surface waters with waters derived from Circumpolar Deep Water (i.e., Warm Deep Water from the Weddell Sea and modified Circumpolar Deep Water from the Bransfield Strait) and Dense Shelf Water. The ASFb eddy acts as a CO2 outgassing structure that reaches a CO2 emission to the atmosphere of ∼1.5 mmol m−2 d–1 in the eddy’s core, mostly due to enhanced dissolved inorganic carbon (DIC). The results suggest that surface variation in DIC in the eddy’s core is modulated by (i) the entrainment of CO2-rich intermediate waters at ∼500 m, (ii) low primary productivity, associated with small phytoplankton cells such as cryptophytes and green flagellates, and (iii) respiration processes caused by heterotrophic organisms (i.e., zooplankton community). By providing a comprehensive view of these physical and biogeochemical properties of this stationary eddy, our results are key to adding new insights to a better understanding of the behavior of mesoscale features influencing sea-air CO2 exchanges in polar environments.
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  • 84
    Publication Date: 2024-01-08
    Description: “Whiting” events in the Bahama Banks, due to high concentrations of carbonate-rich particles suspended in the water, have been reported and discussed widely in the past 80 years. However, little is known about their distributions and particularly about their long-term changes. Here, using a deep learning (DL) model, we objectively delineate and quantify whiting features from Aqua MODIS (Moderate Resolution Imaging Spectroradiometer) satellite images (250-m resolution) and establish an 18-year data record (2003−2020) of whiting occurrences in the Bahama Banks. Both the Great Bahama Bank (GBB) and the Little Bahama Bank (LBB) show clear seasonality in whiting areas, where a primary peak in spring and a secondary peak in winter are found in the GBB but only one peak in winter is found in the LBB. Such a seasonality may be explained using a hydrodynamic hypothesis on calcium carbonate precipitation. The mean size of individual whiting patches in the GBB is about 2.4 ± 6.1 km2 (∼0.1 to 226 km2), while in the LBB is 1.4 ± 2.7 km2 (∼0.1 to 95 km2). The total whiting coverage in a typical cloud-free image is 87.1 km2 in the GBB and 32.0 km2 in the LBB, representing 0.14% and 0.76% of the entire GBB and LBB, respectively. Significant increases in the mean coverage have been found in the GBB since 2011, with peak coverage (∼200 km2) in 2013–2015 being at least 4 times higher than before (20–70 km2). Although the whiting area started to decrease after 2015, it did not reach the pre-2011 level until 2020. On the other hand, correlation analysis and principal component analysis of several environmental factors (pH, light, salinity, carbonate, aragonite, winds, currents) provided some hints on which factors may have contributed. From these, we infer a potential ‘Goldilocks’ scenario, whereby decreases in pH and carbonate concentration, concomitant with increases in Sea Surface Temperature (SST) and current speeds, created conditions increasingly favorable for whitings from 2011 to 2015. Continuation of these environmental trends after 2015, however, resulted in conditions increasingly unfavorable for whiting formation, yet without field-based measurements it is difficult to conclude the potential reasons for increases and decreases of whiting formation in the GBB.
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  • 85
    Publication Date: 2024-01-08
    Description: Zosteric acid (ZA) is a Zostera species-derived, sulfated phenolic acid compound with antifouling activity and has gained much attention due to its nontoxic and biodegradable characteristics. However, the yield of Zostera species available for ZA extraction is limited by natural factors, such as season, latitude, light, and temperature. Here we report the development of metabolically engineered Escherichia coli strains capable of producing ZA from glucose and glycerol. First, intracellular availability of the sulfur donor 3′-phosphoadenosine-5′-phosphosulfate (PAPS) was enhanced by knocking out the cysH gene responsible for PAPS consumption and overexpressing the genes required for PAPS biosynthesis. Co-overexpression of the genes encoding tyrosine ammonia-lyase, sulfotransferase 1A1, ATP sulfurylase, and adenosine 5′-phosphosulfate kinase constructed ZA producing strain with enhanced PAPS supply. Second, the feedback-resistant forms of aroG and tyrA genes (encoding 3-deoxy-d-arabinoheptulosonate 7-phosphate synthase and chorismate mutase, respectively) were overexpressed to relieve the feedback regulation of L-tyrosine biosynthesis. Third, the pykA gene involved in phosphoenolpyruvate-consuming reaction, the regulator gene tyrR, the competing pathway gene pheA, and the ptsHIcrr genes essential for the PEP:carbohydrate phosphotransferase system were deleted. Moreover, all genes involved in the shikimate pathway and the talA, tktA, and tktB genes in the pentose phosphate pathway were examined for ZA production. The PTS-independent glucose uptake system, the expression vector system, and the carbon source were also optimized. As a result, the best-performing strain successfully produced 1.52 g L−1 ZA and 1.30 g L−1 p-hydroxycinnamic acid from glucose and glycerol in a 700 mL fed-batch bioreactor.
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  • 86
    Publication Date: 2024-01-08
    Description: This study examined the phytochemical profiles (mainly phenolics, carotenoids, and organosulfur compounds) and biological effects of hydroalcoholic extracts of Allium flavum (AF), a species of the Allium genus commonly known as small yellow onion. Unsupervised and supervised statistical approaches revealed clear differences between extracts prepared with samples collected from different areas of Romania. Overall, the AFFF (AF flowers collected from Făget) extract was the best source of polyphenols, also showing the highest antioxidant capacity evaluated through both in vitro DPPH, FRAP, and TEAC anti-radical scavenging assays and cell-based OxHLIA and TBARS assays. All the tested extracts exhibited α-glucosidase inhibition potential, while only the AFFF extract exhibited anti-lipase inhibitory activity. The phenolic subclasses annotated were positively correlated with the assessed antioxidant and enzyme inhibitory activities. Our findings suggested that A. flavum has bioactive properties worth exploring further, being a potential edible flower with health-promoting implications.
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  • 87
    Publication Date: 2024-01-08
    Description: Symbiosis between prokaryotes and microbial eukaryotes (protists) has broadly impacted both evolution and ecology. Endosymbiosis led to mitochondria and plastids, the latter spreading across the tree of eukaryotes by subsequent rounds of endosymbiosis. Present-day endosymbionts in protists remain both common and diverse, although what function they serve is often unknown. Here, we describe a highly complex community of endosymbionts and a bacteriophage (phage) within a single cryptomonad cell. Cryptomonads are a model for organelle evolution because their secondary plastid retains a relict endosymbiont nucleus, but only one previously unidentified Cryptomonas strain (SAG 25.80) is known to harbor bacterial endosymbionts. We carried out electron microscopy and FISH imaging as well as genomic sequencing on Cryptomonas SAG 25.80, which revealed a stable, complex community even after over 50 years in continuous cultivation. We identified the host strain as Cryptomonas gyropyrenoidosa, and sequenced genomes from its mitochondria, plastid, and nucleomorph (and partially its nucleus), as well as two symbionts, Megaira polyxenophila and Grellia numerosa, and one phage (MAnkyphage) infecting M. polyxenophila. Comparing closely related endosymbionts from other hosts revealed similar metabolic and genomic features, with the exception of abundant transposons and genome plasticity in M. polyxenophila from Cryptomonas. We found an abundance of eukaryote-interacting genes as well as many toxin-antitoxin systems, including in the MAnkyphage genome that also encodes several eukaryotic-like proteins. Overall, the Cryptomonas cell is an endosymbiotic conglomeration with seven distinct evolving genomes that all show evidence of inter-lineage conflict but nevertheless remain stable, even after more than 4,000 generations in culture.
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  • 88
    Publication Date: 2024-01-08
    Description: The Sirex noctilio’s climatic adaption and rapid proliferation have caused Pinus mortality worldwide. The infestation combines the early effect of female S. noctilio gland secretion and the spreading symbiotic fungus Amylostereum areolatum. 'Lipidomics' is the study of all non-water-soluble components of the metabolome. Most of these non-water-soluble compounds correspond to lipids which can provide information about a biological activity, an organelle, an organism, or a disease. Using HPLC-MS/MS based lipidomics, 122 lipids were identified in P. radiata needles during S. noctilio infestation. Phosphatidic acids, N-acylethanolamines, and phosphatidylinositol-ceramides accumulated in infested trees could suggest a high level of phospholipases activities. The phosphatidylcholines were the most down-regulated species during infection, which could also suggest that they may be used as a substrate for up-regulated lipids. The accumulation of very long-chain fatty acids and long-chain fatty acids during the infestation could imply the tree defense response to create a barrier in the drilled zone to avoid larvae development and fungus proliferation. Also, the growth arrest phase of the trees during the prolonged infestation suggests a resistance response, regulated by the accumulation of NAE, which potentially shifts the tree energy to respond to the infestation.
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  • 89
    Publication Date: 2024-01-08
    Description: Sediment porewater dialysis passive samplers, also known as “peepers,” are inert containers with a small volume of water (usually 1–100 mL) capped with a semi-permeable membrane. When exposed to sediment over a period of days to weeks, chemicals (typically inorganics) in sediment porewater diffuse through the membrane into the water. Subsequent analysis of chemicals in the peeper water sample can provide a value that represents the concentrations of freely-dissolved chemicals in sediment, a useful measurement for understanding fate and risk. Despite more than 45 years of peeper uses in peer-reviewed research, there are no standardized methods available, which limits the application of peepers for more routine regulatory-driven decision making at sediment sites. In hopes of taking a step towards standardizing peeper methods for measuring inorganics in sediment porewater, over 85 research documents on peepers were reviewed to identify example applications, key methodological aspects, and potential uncertainties. The review found that peepers could be improved by optimizing volume and membrane geometry to decrease the necessary deployment time, decrease detection limits, and provide sufficient sample volumes needed for commercial analytical laboratories using standardized analytical methods. Several methodological uncertainties related to the potential impact of oxygen presence in peeper water prior to deployment and oxygen accumulation in peepers after retrieval from sediment were noted, especially for redox-sensitive metals. Additional areas that need further development include establishing the impact of deionized water in peeper cells when used in marine sediment and use of pre-equilibration sampling methods with reverse tracers allowing shorter deployment periods. Overall, it is expected that highlighting these technical aspects and research needs will encourage work to address critical methodological challenges, aiding in the standardization of peeper methods for measuring porewater concentrations at contaminated regulatory-driven sediment sites.
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  • 90
    Publication Date: 2024-01-08
    Description: We analyzed biogeochemical components of brash ice, originating from sea ice and icebergs, collected in the Indian sector of the Southern Ocean during the summer and autumn of 2018–2020. Ice samples, collected from seawater by net or cage methods, were melted in the dark under cool conditions to measure physical and biogeochemical components such as salinity, stable oxygen isotopes, nutrients, and chlorophyll-a. We compared brash ice parameters with those of seawater samples from the temperature minimum layer, corresponding to the water in which the sea ice originated, to examine the effects of processes such as brine drainage, snow-ice formation, and biological activities on the biogeochemical components in sea ice. Samples from icebergs (ice formed on land) had salinity of zero and low concentrations of all other components, suggesting that the atmospheric deposition of nutrients is minimal in this clean environment. However, sea ice samples had a wide range of values for each parameter. Our results show that meteoric water makes a smaller contribution to sea ice than it typically does to multi-year landfast ice, and there is no correlation between this meteoric water contribution and nutrient concentrations, which suggests that the contribution of snow-ice formation to nutrients within sea ice is subordinate to the role of biological processes. Nutrient and chlorophyll-a concentrations in our brash ice samples are of similar magnitude to those in sea ice samples collected in the same area by coring of thick pack ice. Our data represent end-member values that may be useful to estimate the respective contributions of snow, sea ice, and seawater to surface water samples.
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  • 91
    Publication Date: 2024-01-08
    Description: Sponges are known to harbour an exceptional diversity of uncultured microorganisms, including members of the phylum Actinobacteriota. While members of the actinobacteriotal class Actinomycetia have been studied intensively due to their potential for secondary metabolite production, the sister class of Acidimicrobiia is often more abundant in sponges. However, the taxonomy, functions, and ecological roles of sponge-associated Acidimicrobiia are largely unknown. Here, we reconstructed and characterized 22 metagenome-assembled genomes (MAGs) of Acidimicrobiia from three sponge species. These MAGs represented six novel species, belonging to five genera, four families, and two orders, which are all uncharacterized (except the order Acidimicrobiales) and for which we propose nomenclature. These six uncultured species have either only been found in sponges and/or corals and have varying degrees of specificity to their host species. Functional gene profiling indicated that these six species shared a similar potential to non-symbiotic Acidimicrobiia with respect to amino acid biosynthesis and utilization of sulfur compounds. However, sponge-associated Acidimicrobiia differed from their non-symbiotic counterparts by relying predominantly on organic rather than inorganic sources of energy, and their predicted capacity to synthesise bioactive compounds or their precursors implicated in host defence. Additionally, the species possess the genetic capacity to degrade aromatic compounds that are frequently found in sponges. The novel Acidimicrobiia may also potentially mediate host development by modulating Hedgehog signalling and by the production of serotonin, which can affect host body contractions and digestion. These results highlight unique genomic and metabolic features of six new acidimicrobiial species that potentially support a sponge-associated lifestyle.
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  • 92
    Publication Date: 2024-01-08
    Description: The unique flavor of Pixian douban (PXDB) is widely acknowledged to be associated with its maturation process. However, there is limited knowledge about the non-volatile metabolites that contribute to this flavor. To bridge this gap, this study employed a metabolomics approach and a feature-based molecular network (FBMN) analysis to investigate the non-volatile metabolite fingerprints of PXDB during its two-year maturation process. Specifically, the FBMN tool was utilized to annotate the flavonoid, amide derivatives, and lipid components of PXDB for the first time. Subsequently, the MolNetEnhancer tool was employed to complement the FBMN annotation and identify eight substructural components. Finally, metabolomics analysis was carried out to identify 45 key metabolites involved in flavor formation across 10 major metabolic pathways (p 〈 0.05). Overall, the findings of this study have significantly expanded our understanding of the non-volatile metabolite fingerprinting and flavor formation mechanisms.
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  • 93
    Publication Date: 2024-01-08
    Description: Photosynthetic microorganisms like microalgae and cyanobacteria are quickly gaining recognition for their financial potential and have recently been subjected to research into metabolic manipulation to produce biofuels and different bio-based chemicals from CO2 and sunlight. CRISPR-Cas systems are presently the centre of attraction in synthetic biology research. Various cyanobacteria and algae species have been successfully edited using CRISPR-Cas9. However, many technical difficulties, such as chassis-organism-specific Cas9 toxicity, have delayed the progress of this tool for editing the genomes of diverse species of microalgae and cyanobacteria. CRISPR-Cas9 technology has enormous promises, and it has been employed to alter the metabolism of many algae and cyanobacteria. Advances in CRISPR-Cas9 technology and applications, as well as progress in CRISPR-based multiplex genome editing, the importance of traditional molecular tools in CRISPR biology, challenges in developing high-throughput mutant screening, and further improvements in genome-editing methods, have all been thoroughly discussed in order to make the genome engineering of algae and cyanobacteria more feasible. This review identifies important issues, suggests solutions, and highlights recent advances in genome editing in algae and cyanobacteria with the CRISPR-Cas9 system.
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  • 94
    Publication Date: 2024-01-08
    Description: If the umbilical of Remote Operated Vehicle (ROV) allows the transmission of information in real time or the supply of energy to the robot, it also has many disadvantages such as entanglement or the difficulty of predicting its shape, which raises the question of being able to do without it. In order to turn these constraints into advantages, this paper proposes a method to estimate the position of an ROV by observing the shape of its umbilical. The umbilical is equipped with moving ballasts and buoys to give it a predictable shape with straight lines: simple mathematical models of the umbilical can thus be defined. Using these models and measuring the angles at the ends of the cable, the position of the ROV can be found. Three umbilical models with different equipment are proposed. The methods were tested in a pool and the estimated position of the ROV was compared with its actual position measured using a motion capture system.
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  • 95
    Publication Date: 2024-01-08
    Description: Mathematical Oncology has emerged as a research field that applies either continuous or discrete models to mathematically describe cancer-related phenomena. Such methods are usually expressed in terms of differential equations, however tumor composition involves specific cellular structure and can demonstrate probabilistic nature, often requiring tailor-made approaches. In this context, cell-based models allow monitoring independent single parameters, which might vary in both time and space. By relying on extant tumor growth models in the literature, this study introduces cellular-automata simulation strategies that admit heterogeneous cell population while capturing both single-cell and cluster-cell behaviors. In this agent-based computational model, tumor cells are limited to follow four possible courses of action, namely: proliferation, migration, apoptosis or quiescence. Despite the apparent simplicity of those actions, the model can represent different complex tumor features depending on parameter settings. This study virtualized five different scenarios, showcasing model capabilities of representing tumor dynamics including alternate dormancy periods, cell death instability and cluster formation. Implementation techniques are also explored together with prospective model expansion towards deterministic features. The proposed stochastic cellular automaton model is able to effectively simulate different scenarios regarding tumor growth effectively, figuring as an interesting tool for in silico modeling, with promising capabilities of expansion to support research in mathematical oncology, thus improving diagnosis tools and/or personalized treatment.
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  • 96
    Publication Date: 2024-01-08
    Description: Offshore freshened groundwater (OFG) is groundwater with a salinity below that of seawater that is stored in sub-seafloor sediments and rocks. OFG has been proposed as an alternative solution to relieve water scarcity in coastal regions and to enhance oil recovery. Although OFG has been documented in most continental margins, we still have a poor understanding of the extent and flow characteristics of OFG systems, and their evolution through time. In view of the general absence of appropriate field data, paleohydrogeological models have been used. The majority of these models are based on 2D approaches, and they rarely consider the future evolution of OFG systems, especially in response to predicted climate change. Here we utilize recently acquired geological, geophysical and hydrogeological data from onshore and offshore the Maltese Islands, and employ 2D and 3D numerical models, to: (i) reconstruct the evolution of the onshore-offshore groundwater system during the last 188 ka, (ii) predict the evolution of the OFG system in response to climate-related changes. We show that the mechanisms emplacing OFG include a combination of active meteoric recharge at present as well as at sea-level lowstands. The Maltese onshore-offshore groundwater system is relatively dynamic, with 23% of groundwater being preserved in the last 18 ka. The control of geology is expressed by the more prevalent distribution of OFG north of the Great Fault, which is associated to the occurrence of low permeability units, and the asymmetry of the groundwater lens during the 18 ka lowstand. A 30% decrease in recharge predicted in the coming 100 years will diminish OFG extent by 38%, whereas sea-level rise will play a negligible role. At present the estimated volume of OFG is 1 km 3 , which could potentially provide an alternative supply of potable water to the Maltese Islands for 75 years. Exploitation of OFG with minimal salinization of onshore groundwater bodies would require locating pumping wells close to the coast.
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  • 97
    Publication Date: 2024-01-08
    Description: In our previous study, a β-N-acetylhexosaminidase (HaHex74) from Haloferula sp. showing high human milk oligosaccharides (HMOs) synthesis ability was identified and characterized. In this study, HaHex74 was further engineered by directed evolution and site-saturation mutagenesis to improve its transglycosylation activity for HMOs synthesis. A mutant (mHaHex74) with improved transglycosylation activity (HaHex74-Asn401Ile/His394Leu) was obtained and characterized. mHaHex74 exhibited maximal activity at pH 5.5 and 35 °C, respectively, which were distinct from that of HaHex74 (pH 6.5 and 45 °C). Moreover, mHaHex74 showed the highest LNT2 conversion ratio of 28.2% from N,N’-diacetyl chitobiose (GlcNAc2), which is 2.2 folds higher than that of HaHex74. A three-enzyme cascade reaction for the synthesis of LNT2 and LNnT from chitin was performed in a 5–L reactor, and the contents of LNT2 and LNnT reached up to 15.0 g Lsingle bond1 and 4.9 g Lsingle bond1, respectively. Therefore, mHaHex74 maybe a good candidate for enzymatic synthesis of HMOs.
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  • 98
    Publication Date: 2024-01-08
    Description: Harmful marine bacteria, such as Vibrio or Aeromonas species, typically exist at low abundance in ocean environments but represent a reservoir from which epidemics can arise. Particularly, Vibrio strains and their associated infections are on the rise globally due to increasing sea surface temperature representing an emergent threat for human and animal health also being responsible for large economic losses in the aquaculture industry worldwide. New technological approaches are needed to improve strategies targeting these pathogens. This review discusses new approaches based on improved sampling strategies and novel analytical methods offering increased accuracy, high throughput, and informativeness to study and detect microbial pathogens in the marine environment. Detecting and characterizing ultra-low-abundance pathogenic strains can serve as a critical tool in risk management and outbreak prevention of diseases caused by emerging marine pathogens.
    Type: Article , PeerReviewed
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  • 99
    Publication Date: 2024-01-08
    Description: Yak shanks and flanks are often used as food ingredients, but the lipid composition of these two parts may differ significantly. These meat parts were subjected to a lipidomics analysis using UHPLC-Q-Obitrap. Several computational tools, including feature-based molecular networks, ms-dial, and lipidone, were used to perform deep mining on the entire dataset. The analysis annotated 355 lipid species from 20 subclasses. Lipid chains have a length distribution of 16 to 20 carbons, with unsaturation ranging from 0 to 5. The results revealed that 71 lipids were significantly different in these muscles, including phosphatidylethanolamines (PEs) (16:0/20:4), PEs (18:0/19:1), PEs (18:1/22:5), sphingomyelins (SMs) (36:2; 3O), and carnitines (CARs) (22:0). Furthermore, the metabolic pathways of glycerophospholipids and sphingolipids act as important roles in the differences of these lipid components. This study obtained a comprehensive lipid profile, which is critical for understanding the precise nutritional differences in different yak meat sections.
    Type: Article , PeerReviewed
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  • 100
    Publication Date: 2024-01-08
    Description: Isoflavones are important chemical components in Pueraria species with various biological activities. This study proposed an integrated strategy combining feature-based molecular networking (FBMN), chemometrics and activity evaluation for isoflavone analysis in the roots of P. lobate (PLR) and P. thomsonii (PTR). Based on the strategy, a total of 68 isoflavones were annotated in the two Pueraria species, and 11 significant difference isoflavones between PLR and PTR were identified by chemometric methods. Additionally, the correlation coefficient between the characteristic isoflavones and hypoglycemic activity were calculated, and 7 isoflavones were further confirmed as bioactive marker compounds. This approach provided guidance for the discovery of active markers among different products.
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