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  • Elsevier  (593,884)
  • American Chemical Society  (210,465)
  • Public Library of Science  (118,079)
  • American Chemical Society (ACS)  (58,792)
  • 2010-2014  (981,220)
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  • 1
    Electronic Resource
    Electronic Resource
    A measurement of τ polarization in Z^0 decays (1992-8977)
    Amsterdam : Elsevier
    Physics Letters B 294 (1992), S. 466-478 
    Details
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
    Type of Medium: Electronic Resource
    URL: http://linkinghub.elsevier.com/retrieve/pii/0370-2693(92)91549-O
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  • 2
    Electronic Resource
    Electronic Resource
    Measurement of the average lifetime of b hadrons (1993-4325)
    Amsterdam : Elsevier
    Physics Letters B 317 (1993), S. 474-484 
    Details
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
    Type of Medium: Electronic Resource
    URL: http://linkinghub.elsevier.com/retrieve/pii/0370-2693(93)91027-K
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  • 3
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    A major change in the sedimentation regime in the Crotone Basin (Southern Italy) around 3.7-3.6 Ma (2014)
    Elsevier
    Details
    Publication Date: 2021-05-17
    Description: The Lower Pliocene succession of the Crotone Basin (Calabrian Arc, Southern Italy) is mainly comprised of blue-grey marly clay with good magnetic properties. Here the bio-magnetostratigraphic data indicate a mean sedimentation rate of about 12–15 cm/kyr. Around 3.7–3.6 Ma a major change in the sedimentation regime occurred: the blue-grey hemipelagic marls grade rapidly into silty marls with a significant increase in the terrigenous fraction and with abundant siliceous remains throughout the whole interval. Magnetic properties of these sediments are very poor, but an integrated calcareous plankton biostratigraphy (foraminifera and nannofossils) infers a high average sedimentation rate (about 50–60 cm/kyr). The abrupt onset of this sedimentation regime in the Crotone Basin is contemporaneous with a major unconformity already recognized in the northern sector of the basin, part of amajor reorganization phase in the whole Apenninic–Maghrebid Chain known as “Globorotalia puncticulata event”. Reports of coeval siliceous sediments in other marginal basins of the Apennines (Southern Calabria, Southern and Northern Apennines) suggest that this “siliceous event” might have been regionally extensive, having important palaeoceanographical implications.We infer that the “siliceous event” is characterized by a combined tectonic- and climate-induced change in palaeoceanographic conditions. The tectonic triggering factors may have been linked to two synchronous events in the Tyrrhenian–Apennine system: 1) the shortening event also known as “G. puncticulata event”, and 2) the coeval opening of the Vavilov Basin in the Tyrrhenian Sea which yielded profound influences in terms of physiography and characteristics of the Crotone Basin. The consequent uplift of the Southern Apennines would have increased sediment supply and availability of silica, resulting in eutrophication and enhanced silica preservation. Strong winter mixing and possibly upwelling conditions could have increased primary productivity during heavy isotope stages Gi4, Gi2 and MG8, at the onset of the “siliceous event”. This important event, lasting from ca. 3.6 Ma to ca. 3.2 Ma, would have recorded a peculiar transitional period before further climatic deterioration and more drastic palaeoceanographic changes occurred around 3.1 Ma, leading to cyclic sapropel deposition in the whole of the Mediterranean sea.
    Description: Published
    Description: 398-410
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Biostratigraphy ; Magnetostratigraphy ; Pliocene ; Calabrian Arc ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.04. Geology::04.04.10. Stratigraphy ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
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    Magnetic fabric of Plio-Pleistocene sediments from the Crotone fore-arc basin: Insights on the recent tectonic evolution of the Calabrian Arc (Italy) (2014)
    Elsevier
    Details
    Publication Date: 2020-12-07
    Description: Low-field anisotropy of magnetic susceptibility (AMS) analyses were performed on 532 samples col-lected in 36 (mostly lower Pliocene to lower Pleistocene) marine clay sites from the Crotone basin, afore-arc basin located on top of the external Calabrian accretionary wedge. The Crotone basin formedsince mid-late Miocene under a predominant extensional tectonic regime, but it was influenced there-after by complex interactions with NW–SE left-lateral strike-faults bounding the basin, which also yieldedpost-1.2 Ma ~30◦counterclockwise block rotations. The basin is filled by continental to marine sedimentsyielding one of the thickest and best-exposed Neogene succession available worldwide. The deep-marinefacies – represented by blue-grey marly clays gave the best results, as they both preserved a clear mag-netic fabric, and provided accurate chronology based on previously published magnetostratigraphy andcalcareous plankton (i.e. foraminifers and nannofossils) biostratigraphy. Magnetic susceptibility rangeand rock magnetic analyses both indicate that AMS reflects paramagnetic clay matrix crystal arrange-ment. The fabric is predominantly oblate to triaxial, the anisotropy degree low (〈1.06), and the magneticfoliation mostly subparallel to bedding. Magnetic lineation is defined in 30 out of 36 sites (where thee12 angle is 〈35◦). By also considering local structural analysis data, we find that magnetic fabric wasgenerally acquired during the first tectonic phases occurring after sediment deposition, thus validatingits use as temporally dependent strain proxy. Although most of the magnetic lineations trend NW–SE andare orthogonal to normal faults (as observed elsewhere in Calabria), few NE–SW compressive lineationsshow that the Neogene extensional regime of the Crotone basin was punctuated by compressive episodes.Finally, compressive lineations (prolate magnetic fabric) documented along the strike-slip fault boundingthe basin to the south support the significance of Pleistocene strike-slip tectonics. Thus the Crotone basinshows a markedly different tectonics with respect to other internal and western basins of Calabria, asit yields a magnetic fabric still dominated by extensional tectonics but also revealing arc-normal short-ening episodes and recent strike-slip fault activity. The tectonics documented in the Crotone basin iscompatible with a continuous upper crustal structural reorganization occurring during the SE-migrationof the Calabria terrane above the Ionian subduction system.
    Description: Published
    Description: 67-79
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Calabrian Arc, Anisotropy of magnetic susceptibility, Structural analysis, Fore-arc region ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.04. Geology::04.04.09. Structural geology ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism ; 04. Solid Earth::04.05. Geomagnetism::04.05.07. Rock magnetism ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
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    Cyanobacteria in Scandinavian coastal waters — A potential source for biofuels and fatty acids? (2014)
    Elsevier
    In:  EPIC3Algal Research, Elsevier, 5, pp. 42-51, ISSN: 2211-9264
    Details
    Publication Date: 2014-06-24
    Description: Since land-based biofuel production competes with conventional food production, a water-based biomass and biofuel production from cyanobacteria offers large potential. This study investigates the application potential of cyanobacteria for fuel production and by-products by mimicking nutrient depleted environmental conditions. Three Baltic cyanobacteria strains (Aphanizomenon flos-aquae, Dolichospermum lemmermannii and Nodularia spumigena) were inoculated in full nutrient levels, as well as phosphorus and nitrogen depleted medium, before being monitored for 14 days. For screening reasons, multiple parameters such as fatty acids, photosynthetic pigments including phycobilins, biovolume, photosynthetic activity, inorganic nutrients, particulate organic carbon, nitrogen and phosphorous were investigated every seven days. We observed a strong negative relationship between lipid content, growth and nutrient availability, resulting in high lipid and pigment production in combination with a limited growth rate in nutrient depleted treatments. Our results suggest that cultivation and harvest of bloom-forming cyanobacteria for fuel and by-product production are feasible in Scandinavia, but strongly depends on the desired compounds and biomass. Each cyanobacteria species originally has a species-specific chemical fingerprint that may be modified by rearing conditions and harvesting period to meet the needs of the consumer. This leads to important conclusions regarding future culturing conditions and biomass production of the desired compounds.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 6
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    Biological validation of physical coastal waters classification along the NE Atlantic region based on rocky macroalgae distribution (2014)
    Elsevier
    In:  EPIC3Estuarine, Coastal and Shelf Science, Elsevier, 147, pp. 103-112, ISSN: 0272-7714
    Details
    Publication Date: 2014-06-30
    Description: A methodology to classify rocky shores along the North East Atlantic (NEA) region was developed. Previously, biotypes and the variability of environmental conditions within these were recognized based on abiotic data. A biological validation was required in order to support the ecological meaning of the physical typologies obtained. A database of intertidal macroalgae species occurring in the coastal area between Norway and the South Iberian Peninsula was generated. Semi-quantitative abundance data of the most representative macroalgal taxa were collected in three levels: common, rare or absent. Ordination and classification multivariate analyses revealed a clear latitudinal gradient in the distribution of macroalgae species resulting in two distinct groups: one northern and one southern group, separated at the coast of Brittany (France). In general, the results based on biological data coincided with the results based on physical characteristics. The ecological meaning of the coastal waters classification at a broad scale shown in this work demonstrates that it can be valuable as a practical tool for conservation and management purposes.
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
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    Neodymium and hafnium boundary contributions to seawater along the West Antarctic continental margin (2014)
    Elsevier
    In:  EPIC3Earth and Planetary Science Letters, Elsevier, 394, pp. 99-110, ISSN: 0012-821X
    Details
    Publication Date: 2018-08-10
    Description: Neodymium and hafnium isotopes and elemental concentrations (Sm, Nd, Hf, Zr) have been measured in three water column profiles south of the Antarctic Circumpolar Current in, and to the east of the Ross Sea, in conjunction with five bottom water samples from the Amundsen Sea Embayment. Neodymium and hafnium both appear to be released from sediments in the Embayment. In the case of Nd, this is reflected in radiogenic isotope compositions (εNd up to −5.4) and highly elevated concentrations (up to 41 pmol/kg). Hafnium isotopes, on the other hand, are only very slightly altered relative to the open ocean sites, and boundary release is most prominently indicated by elevated concentrations (〉1 pmol/kg versus ∼0.7 pmol/kg). There is also a local input of both Hf and Nd at the Marie Byrd Seamounts, which leads to Nd isotope compositions as radiogenic as −3.1, and hafnium shifted to less radiogenic compositions in local bottom water. A compilation of the new data with literature data reveals a consistent view of the influence of Antarctica on the Nd isotope composition in Lower Circumpolar Deep Water (LCDW) and Antarctic Bottom Water (AABW). Sector specific Nd addition shifts AABW formed in the Atlantic sector to less radiogenic isotope compositions (average εNd = −9) relative to LCDW (average εNd = −8.4), whereas AABW in the Pacific sector is shifted to more radiogenic values (average εNd = −7). The evolution towards more radiogenic εNd with depth in LCDW in the Pacific sector is likely to reflect admixture of AABW but, in addition, is also controlled by boundary exchange with the slope as observed at the Marie Byrd Seamounts. Hafnium isotopes are relatively homogeneous in the data set, ranging between εHf = +2 and +3.8 for most samples, excluding less radiogenic compositions in deep waters close to the Marie Byrd Seamounts. The Hf isotope composition in the Pacific sector is, however, slightly less radiogenic than in the Atlantic, corresponding to an average of +3 relative to an average of +3.8. This probably reflects unradiogenic Hf inputs from Antarctica to the Pacific sector, which are vertically homogenized by reversible scavenging. The Hf isotope heterogeneity in LCDW between both sectors is likely to indicate a shorter seawater residence time for Hf than for Nd, which is consistent with the dissolved – particulate phase partitioning of both elements
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    Insolation and glacial–interglacial control on southwestern African hydroclimate over the past 140000 years (2014)
    Elsevier
    In:  EPIC3Earth and Planetary Science Letters, Elsevier, 398, pp. 1-10, ISSN: 0012-821X
    Details
    Publication Date: 2014-06-27
    Description: The past climate evolution of southwestern Africa is poorly understood and interpretations of past hydrological changes are sometimes The past climate evolution of southwestern Africa is poorly understood and interpretations of past hydrological changes are sometimes contradictory. Here we present a record of leaf-wax δD and δ13C taken from a marine sediment core at 23°S off the coast of Namibia to reconstruct the hydrology and C3 versus C4 vegetation of southwestern Africa over the last 140 000 years (140 ka). We find lower leaf-wax δD and higher δ13C (more C4 grasses), which we interpret to indicate wetter Southern Hemisphere (SH) summer conditions and increased seasonality, during SH insolation maxima relative to minima and during the last glacial period relative to the Holocene and the last interglacial period. Nonetheless, the dominance of C4 grasses throughout the record indicates that the wet season remained brief and that this region has remained semi-arid. Our data suggest that past precipitation increases were derived from the tropics rather than from the winter westerlies. Comparison with a record from the Congo Basin indicates that hydroclimate in southwestern Africa has evolved in antiphase with that of central Africa over the last 140 ka.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    The Gordian knot of mangrove conservation: Disentangling the role of scale, services and benefits (2014)
    Elsevier
    In:  EPIC3Global Environmental Change, Elsevier, 28, pp. 120-128, ISSN: 0959-3780
    Details
    Publication Date: 2016-10-07
    Description: Mangrove forests are among the most threatened tropical ecosystems. Their role as providers of important ecosystem services such as coastal protection, carbon storage and nursery habitats for economically important species is increasingly acknowledged. But mangrove destruction continues, and we might have to face the prospect of a world deprived of the services offered by mangrove ecosystems. Mangrove transformation and destruction is often caused by mismatches in mangrove system management. These root in interests that focus on selected ecosystem services only, but also result from a problem of fit between the spatial scales at which ecosystem services are provided, and those at which their benefits are realized. We argue that a combination of the ecosystem services concept with a careful approach to the issue of scales will help to overcome these problems and improve the management of mangrove systems. Drawing on two case studies from Indonesia and Brazil, we illustrate the relevance of our findings for different ecosystem services.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    Impact of recirculation on the East Greenland Current in Fram Strait: Results from moored current meter measurements between 1997 and 2009 (2014)
    Elsevier
    In:  EPIC3Deep Sea Research Part I: Oceanographic Research Papers, Elsevier, 92, pp. 26-40, ISSN: 0967-0637
    Details
    Publication Date: 2014-09-09
    Description: Transports of total volume and water masses obtained from a mooring array in the East Greenland Current (EGC) in Fram Strait are presented for the period 1997–2009. The array in the EGC was moved along isobaths from 79°N to 78°50′N78°50′N in 2002 to line up with moorings in the eastern Fram Strait. Analysis of the time series at the two latitudes shows that associated with the southward move, the annual mean volume transport of the EGC increased from 5.8±1.8 Sv to 8.7±2.5 Sv, mostly related with an increase in barotropic flow. This suggests a recirculation of close to 3 Sv at 78°50′N78°50′N as a consequence of the large-scale wind-driven cyclonic gyre in the Nordic Seas. In addition, the volume transport at 78°50′N78°50′N showed a clear seasonal cycle which was absent at 79°N. Estimates of the wind-driven Sverdrup transport at two different latitudes show that the difference in total volume transport and seasonality can largely be explained by the wind-stress curl. However, weak transport in 2003 was only partially related with weak Sverdrup transport and coincided also with anomalously weak northerly winds. The stronger recirculation at 78°50′N78°50′N has also consequences for the observed Atlantic Water: there is significantly more Atlantic derived water present at the southerly latitude. In addition, the warm anomaly in Fram Strait between 2005 and 2007 doubled the amount of Recirculated Atlantic Water temporarily. Finally, we estimate that close to 2.7 Sv, or 50%, of Atlantic derived water recirculates in Fram Strait.
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
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    Biome distribution over the last 22,000 yr in China (2014)
    Elsevier
    In:  EPIC3Palaeogeography, Palaeoclimatology, Palaeoecology, Elsevier, 409, pp. 33-47, ISSN: 0031-0182
    Details
    Publication Date: 2019-08-23
    Description: Patterns of past vegetation changes over time and space can help facilitate better understanding of the interactions among climate, ecosystem, and human impact. Biome changes in China over the last 22,000 yr (calibrated radiocarbon date, a BP) were numerically reconstructed by using a standard approach of pollen-plant functional type-biome assignment (biomization). The biomization procedure involves pollen data from 2434 surface sites and 228 fossil sites with a high quality of pollen count and 14C dating, 51 natural and three anthropogenic plant functional types (PFTs), as well as 19 natural and one anthropogenic biome. Surface pollen-based reconstruction of modern natural biome patterns is in good agreement (74.4%) with actual vegetation distribution in China. However, modern large-scale anthropogenic biome reconstruction has not been successful based on the current setup of three anthropogenic PFTs (plantation, secondary, and disturbed PFT) because of the limitation of non-species level pollen identification and the difficulty in the clear assignment of disturbed PFTs. The non-anthropogenic biome distributions of 44 time slices at 500-year intervals show large-scale discrepant and changed vegetation patterns from the last glacial maximum (LGM) to the Holocene throughout China. From 22 ka BP to 19 ka BP, temperate grassland, xerophytic shrubland, and desert dominated northern China,whereas cold or cool forests flourished in central China.Warm–temperate evergreen forests were restricted to far southern China, and tropical forestswere absent. During 18.5 ka BP to 12 ka BP, cold, cool, and dry biomes extended to someparts of northern,western, and eastern China.Warm–temperate evergreen andmixed forests gradually expanded to occupy thewhole of southern China. A slight northward shift of forest biomes occurred from15 ka BP to 12 ka BP. During 11.5 ka BP to 9 ka BP, temperate grassland and shrubland gradually stretched to northern and western China. Cold and cool forestswidely expanded into northern and central China, aswell as in the northern margin of South China along with temperate deciduous forest. Since the early mid-Holocene (approximately 8.5 ka BP to 5.5 ka BP), all forest biomes shifted northward at the expense of herbaceous and shrubby biomes. Simultaneously, cold and cool forest biomes occupied the marginal areas of the Tibetan Plateau and the high mountains in western China. During the middle to late Holocene, from 5 ka to the present, temperate grassland and xerophytic shrubland expanded to the south and east, whereas temperate deciduous forests slightly shifted southward. After 3 ka BP, forest biomes were absent in western China and on the Tibetan plateau surface. Dramatic biome shifts from theLGM to the Holocene were observed in the forest-grassland ecotone and transitional zones between temperate and subtropical climates, between subtropical and tropical regions, and in the mountainous margins of the eastern Tibetan Plateau. Evidence showed more human disturbances during the late Holocene. More pollen records and historical documents are therefore further needed to understand fully the human disturbance-induced large-scale forest changes. In addition, more classifications of anthropogenic biome or land cover, more distinct assignment of pollen taxa to anthropogenic PFTs, and more effective numerical and/or mechanistic techniques in building large-scale human disturbances are required.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    Dissolved methane concentration and flux in the coastal zone of the Southern California Bight-Mexican sector: Possible influence of wastewater (2014)
    Elsevier
    In:  EPIC3Estuarine, Coastal and Shelf Science, Elsevier, 144, pp. 65-74, ISSN: 0272-7714
    Details
    Publication Date: 2014-07-14
    Description: We measured dissolved methane concentrations ([CH4]) in the coastal zone of the Southern California Bight-Mexican sector (SCBMex) during two cruises: S1 in the USA–Mexico Border Area (BA) during a short rainstorm and S2 in the entire SCBMex during a drier period a few days later. High spatial variability in surface mixed layer (ML) [CH4] was observed, ranging from 2.2 nmol L−1 to 17.8 nmol L−1. ML-[CH4] was supersaturated at all BA stations during both cruises. The highest [CH4] was 72.4 nmol L−1 (2819 % supersaturated) measured at 10 m depth during S2, about 3 km southwest of the discharge point of the South Bay Ocean Outfall (SBOO). Our results show an apparent connection between wastewater treatment discharges and [CH4]. Application of a sewer CH4 production model suggests that the SBOO may be a large source of CH4 to the BA and points to the need to consider point sources in developing coastal marine CH4 budgets for highly populated areas. Based on our data, the SCBMex appears to be a relatively strong source of CH4 to the atmosphere compared to other Pacific Basin areas. The average BA sea-to-air CH4 flux (F) during S1 was (15.5 ± 8.6) × 10−2 nmol m−2 s−1, about 1.5 times higher than F during S2, which had a flux of (9.5 ± 6.9) × 10−2 nmol m−2 s−1 mainly due to the higher wind speed during S1.
    Repository Name: EPIC Alfred Wegener Institut
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  • 13
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    Development of the Western Boundary Undercurrent at Eirik Drift related to changing climate since the early Miocene (2014)
    Elsevier
    In:  EPIC3Deep Sea Research I: Oceanographic Research Papers, Elsevier, 93, pp. 21-34, ISSN: 0967-0637
    Details
    Publication Date: 2019-07-16
    Description: Eirik Drift lies on the slope south of Greenland, where it has been formed under the influence of the Western Boundary Undercurrent (WBUC) closely downstream of its origin in the deep-water formation centres of the Nordic Seas. Therefore, the sediment record at Eirik Drift documents modifications in pathways and intensity of the WBUC. These modifications reflect alterations in deep-water formation in the Nordic Seas and are therefore coupled with climate changes. Based on the seismostratigraphic analysis of sedimentary architecture identified in a set of high-resolution seismic reflection data, we have reconstructed the palaeocirculation of the WBUC at Eirik Drift since the early Miocene. We revealed a strong WBUC during warm climate conditions, and in phases of climate cooling with enhanced sea-ice extent we interpreted weak WBUC influence. We suggest a southward shift of the deep-water formation regions along with a shift of the deep current system during the cool phases. This shift implies that the main North Atlantic deep-water route affected Eirik Drift only during warm phases and that during cool phases weak branches of the circulation system flowed over Eirik Drift.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    The fate of microplastics in the marine isopod Idotea emarginata (2014)
    American Chemical Society
    In:  EPIC3Environmental Science and Technology, American Chemical Society, 48, pp. 13451-13458, ISSN: 0013-936X
    Details
    Publication Date: 2014-11-21
    Description: Plastic pollution is an emerging global threat for marine wildlife. Many species of birds, reptiles and fishes are directly impaired by plastics as they can get entangled in ropes and drown or they can ingest plastic fragments which, in turn, may clog their stomachs and guts. Microplastics of less than 1 mm can be ingested by small invertebrates but their fate in the digestive organs and their effects on the animals are yet not well understood. We embedded fluorescent microplastics in artificial agarose-based food and offered the food to marine isopods, Idotea emarginata. The isopods did not distinguish between food with and food without microplastics. Upon ingestion, the microplastics were present in the stomach and in the gut but not in the tubules of the midgut gland which is the principal organ of enzyme-secretion and nutrient resorption. The feces contained the same concentration of micro-plastics as the food which indicates that no accumulation of microplastics happens during the gut passage. Long-term bioassays of six weeks showed no distinct effects of continu¬ous micro-plastic consumption on mortality, growth, and intermolt duration. I. emarginata are able to prevent intrusion of particles even smaller than 1 µm into the midgut gland which is facilitated by the complex structure of the stomach including a fine filter system. It separates the midgut gland tubules from the stomach and allows only the passage of fluids and chyme. Our results indicate that micro¬plastics, as administered in the experi¬ments, do not clog the digestive organs of isopods and do not have adverse effects on their life history parameters.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
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    The Indian Ocean Zonal Mode over the past millennium in observed and modeled precipitation isotopes (2014)
    Elsevier
    In:  EPIC3Quaternary Science Reviews, Elsevier, 103, pp. 1-18, ISSN: 0277-3791
    Details
    Publication Date: 2014-10-17
    Description: The Indian Ocean Zonal Mode (IOZM) has gained considerable attention in the past decade due to its role in causing widespread flooding and droughts in the continents and islands surrounding the Indian Ocean. The IOZM has also been observed to vary on a low-frequency (multi-decadal) basis, making its behavior important to understand both for mid-range 21st century climate prediction and for paleoclimate studies. Despite efforts to reconstruct the IOZM using corals and other high-resolution proxies, nonstationarities in the response of paleoclimate proxies to the IOZM have also been noted, raising the possibility that the IOZM may be difficult to reconstruct or to predict in the long-term. It is therefore critical to assess the low-frequency component of the IOZM in observed, modeled, and paleoclimate data from the Indian Ocean region in order to identify nonstationary behavior and to assess its role in low-frequency climate variations. We present an analysis of low-frequency and nonstationary behavior in the IOZM on multi-decadal to centennial timescales using a combination of modeled, observed, and proxy reconstructions of δ18O/δDprecip. In order to assess multiple timescales of low-frequency variability, we focus on two key time periods: the historical period (1870–2003), and the past millennium (1000 C.E.-present). We find significant nonstationarities in the relationships between the IOZM, precipitation amount, and δ18Oprecip/δDprecip during the historical period. These relationships vary on a multi-decadal basis in our model and in observed/reanalysis datasets. Air-sea interactions in the Indo-Pacific Warm Pool and teleconnections to the Pacific Ocean, as well as the phase of the IOZM itself, may contribute to this nonstationary behavior. We examine the potential ramifications of nonstationary IOZM behavior using a synthesis of spatially distributed proxy archives of δ18Oprecip/δDprecip from both sides of the IOZM region spanning the past millennium. Our findings indicate that during the past millennium, a strong IOZM-like connection exists in the proxy data network, with anti-correlation between East Africa and Indonesia. However, the links are spatially limited and in some cases timescale-dependent. Nonlinear behaviors in these links suggest that the IOZM may be difficult to detect on a consistent basis in proxy records from the past millennium. Based on our modeling results, the inconsistent links in the IOZM proxy network may arise from temporally and spatially variable relationships between the IOZM, precipitation, and δ18Oprecip/δDprecip. We conclude that the IOZM's potential to influence the climate of the Indian Ocean region is inconsistently reflected in proxy data, and that due to the changing strength of the IOZM/δ18Oprecip/δDprecip relationship, its spatial “footprint” may be restricted on multi-decadal to multi-centennial timescales.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    On the difficulty of modeling Circumpolar Deep Water intrusions onto the Amundsen Sea continental shelf (2014)
    Elsevier
    In:  EPIC3Ocean Modelling, Elsevier, 84, pp. 26-34, ISSN: 1463-5003
    Details
    Publication Date: 2014-11-11
    Description: In the Amundsen Sea, warm Circumpolar Deep Water (CDW) intrudes onto the continental shelf and flows into the ice shelf cavities of the West Antarctic Ice Sheet, resulting in high basal melt rates. However, none of the high resolution global models resolving all the small ice shelves around Antarctica can reproduce a realistic CDW flow onto the Amundsen Sea continental shelf, and previous studies show simulated bottom potential temperature at the Pine Island Ice Shelf front of about −1.8 °C. In this study, using the Finite-Element Sea ice–ice shelf-Ocean Model (FESOM), we reproduce warm CDW intrusions onto the Amundsen Sea continental shelf and realistic melt rates of the ice shelves in West Antarctica. To investigate the importance of horizontal resolution, forcing, horizontal diffusivity, and the effect of grounded icebergs, eight sensitivity experiments are conducted. To simulate the CDW intrusion realistically, a horizontal resolution of about 5 km or smaller is required. The choice of forcing is also important and the cold bias in the NCEP/NCAR reanalysis over the eastern Amundsen Sea prevents warm CDW from intruding onto the continental shelf. On the other hand, the CDW intrusion is not highly sensitive to the strength of horizontal diffusion. The effect of grounded icebergs located off Bear Peninsula is minor, but may act as a buffer to an anomalously cold year.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
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    Uranium-Thorium Decay Series in the Oceans: Overview (2014)
    Elsevier
    In:  EPIC3Earth Systems and Environmental Sciences, (Reference Module in Earth Systems and Environmental Sciences), Amsterdam, Elsevier, 16 p., pp. 1-16, ISBN: 978-0-12-409548-9
    Details
    Publication Date: 2014-05-19
    Description: Natural radioactivity provides tracers in a wide range of characteristic timescales and reactivities, which can be used as tools to study the rate of reaction and transport processes in the ocean. Apart from cosmogenic nuclides and the long-lived radioisotope K-40, the natural radioactivity in the ocean is primarily derived from the decay series of three radionuclides that were produced in the period of nucleosynthesis preceding the birth of our solar system: Uranium-238, Thorium-232, and Uranium-235 (a fourth series, including Uranium-233, has already decayed away). The remaining activity of these so-called primordial nuclides in the Earth's crust, and the range of half-lives and reactivities of the elements in their decay schemes, control the present distribution of U-series nuclides in the ocean
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
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    A 3D shear-wave velocity model of the upper mantle beneath China and the surrounding areas (2014)
    Elsevier
    In:  EPIC3Tectonophysics, Elsevier, 633, pp. 193-210, ISSN: 0040-1951
    Details
    Publication Date: 2014-12-02
    Description: We present a three-dimensional model of shear wave velocity for the upper mantle of China and the surrounding region by analyzing 50,338 vertical component multi-mode Rayleigh wave seismograms, recorded at 144 permanent and more than 300 temporary broadband stations in and around China. The procedure involves combination of 1-D path average models obtained by modeling each Rayleigh waveform up to the 4th higher mode in a tomographic inversion scheme. The dense station network and the use of multi-mode analysis help to achieve a lateral resolution of a few hundred kilometers down to 400 km depth. The seismic lithosphere, as it is defined by the crust and the high velocity mantle lid, is to the first order thin in east China and thick in the west, with a high velocity lid extending down to about 200 km depth beneath much of the Tibet–Pamir plateau. Beneath India, the thickness of the seismic lithosphere gradually increases from ~ 100 km in south India to more than 150 km in north India, where it underthrusts the Tibetan plateau to approximately the Jinsha River Suture. High velocity lid extending down to 100–150 km depth is also observed in the Tarim basin, Sichuan basin and Ordos block. In the eastern part of the North China craton the seismic lithosphere is probably close to or thinner than 70 km. Adjacent to these areas, the high velocity lid in the eastern Yangtze craton and South China fold system extends down to 70–80 km depth. A large-scale subhorizontal high velocity body is observed at depths of 150–350 km beneath the entire east China cratonic areas. This high velocity body might be the remnant of a delamination process which resulted in the decratonization of the North China and the Yangtze cratons.
    Repository Name: EPIC Alfred Wegener Institut
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  • 19
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    Anomalous South Pacific lithosphere dynamics derived from new total sediment thickness estimates off the West Antarctic margin (2014)
    Elsevier
    In:  EPIC3Global and Planetary Change, Elsevier, 123(Part A), pp. 139-149, ISSN: 0921-8181
    Details
    Publication Date: 2014-12-17
    Description: Paleotopographic models of the West Antarctic margin, which are essential for robust simulations of paleoclimate scenarios, lack information on sediment thickness and geodynamic conditions, resulting in large uncertainties. A new total sediment thickness grid spanning the Ross Sea–Amundsen Sea–Bellingshausen Sea basins is presented and is based on all the available seismic reflection, borehole, and gravity modeling data offshore West Antarctica. This grid was combined with NGDC's global 5 arc minute grid of ocean sediment thickness (Whittaker et al., 2013) and extends the NGDC grid further to the south. Sediment thickness along the West Antarctic margin tends to be 3–4 km larger than previously assumed. The sediment volume in the Bellingshausen, Amundsen, and Ross Sea basins amounts to 3.61, 3.58, and 2.78 million km3, respectively. The residual basement topography of the South Pacific has been revised and the new data show an asymmetric trend over the Pacific–Antarctic Ridge. Values are anomalously high south of the spreading ridge and in the Ross Sea area, where the topography seems to be affected by persistent mantle processes. In contrast, the basement topography offshore Marie Byrd Land cannot be attributed to dynamic topography, but rather to crustal thickening due to intraplate volcanism. Present-day dynamic topography models disagree with the presented revised basement topography of the South Pacific, rendering paleotopographic reconstructions with such a limited dataset still fairly uncertain.
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  • 20
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    Multiple Sclerosis in the Mount Etna Region: Possible Role of Volcanogenic Trace Elements (2014)
    Public Library of Science
    Details
    Publication Date: 2017-04-04
    Description: Background: Trace elements have been hypothesised to be involved in the pathogenesis of Multiple Sclerosis and volcanic degassing is the major natural sources of trace elements. Both incidence of Multiple Sclerosis in Catania and volcanic activity of Mount Etna have been significantly increased during the last 30 years. Due to prevailing trade winds direction, volcanic gases from Etna summit craters are mostly blown towards the eastern and southern sectors of the volcano. Objective: To evaluate the possible association between Multiple Sclerosis and exposure to volcanogenic trace elements. Methods: We evaluated prevalence and incidence of Multiple Sclerosis in four communities (47,234 inhabitants) located in the eastern flank and in two communities (52,210 inhabitants) located in the western flank of Mount Etna, respectively the most and least exposed area to crater gas emissions. Results: A higher prevalence was found in the population of the eastern flank compared to the population of the western one (137.6/100,000 versus 94.3/100,000; p-value 0.04). We found a borderline significantly higher incidence risk during the incidence study period (1980–2009) in the population of the eastern flank 4.6/100,000 (95% CI 3.1–5.9), compared with the western population 3.2/100,000 (95% CI 2.4–4.2) with a RR of 1.41 (95% CI 0.97–2.05; p-value 0.06). Incidence risks have increased over the time in both populations reaching a peak of 6.4/100,000 in the eastern flank and of 4.4/100.000 in the western flank during 2000–2009. Conclusion: We found a higher prevalence and incidence of Multiple Sclerosis among populations living in the eastern flank of Mount Etna. According to our data a possible role of TE cannot be ruled out as possible co-factor in the MS pathogenesis. However larger epidemiological study are needed to confirm this hypothesis.
    Description: Published
    Description: e74259
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: JCR Journal
    Description: open
    Keywords: Mt. Etna volcano ; Multiple Sclerosis ; trace elements ; volcanic activity ; 05. General::05.08. Risk::05.08.01. Environmental risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
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    Geosphere-biosphere interacions in bio-activity volcanic lakes: evidences from Hule and Rìo Cuarto (Costa Rica). (2014)
    Public Library of Science
    Details
    Publication Date: 2020-02-24
    Description: Hule and Rı´o Cuarto are maar lakes located 11 and 18 km N of Poa´s volcano along a 27 km long fracture zone, in the Central Volcanic Range of Costa Rica. Both lakes are characterized by a stable thermic and chemical stratification and recently they were affected by fish killing events likely related to the uprising of deep anoxic waters to the surface caused by rollover phenomena. The vertical profiles of temperature, pH, redox potential, chemical and isotopic compositions of water and dissolved gases, as well as prokaryotic diversity estimated by DNA fingerprinting and massive 16S rRNA pyrosequencing along the water column of the two lakes, have highlighted that different bio-geochemical processes occur in these meromictic lakes. Although the two lakes host different bacterial and archaeal phylogenetic groups, water and gas chemistry in both lakes is controlled by the same prokaryotic functions, especially regarding the CO2-CH4 cycle. Addition of hydrothermal CO2 through the bottom of the lakes plays a fundamental priming role in developing a stable water stratification and fuelling anoxic bacterial and archaeal populations. Methanogens and methane oxidizers as well as autotrophic and heterotrophic aerobic bacteria responsible of organic carbon recycling resulted to be stratified with depth and strictly related to the chemical-physical conditions and availability of free oxygen, affecting both the CO2 and CH4 chemical concentrations and their isotopic compositions along the water column. Hule and Rı´o Cuarto lakes were demonstrated to contain a CO2 (CH4, N2)-rich gas reservoir mainly controlled by the interactions occurring between geosphere and biosphere. Thus, we introduced the term of bio-activity volcanic lakes to distinguish these lakes, which have analogues worldwide (e.g. Kivu: D.R.C.-Rwanda; Albano, Monticchio and Averno: Italy; Pavin: France) from volcanic lakes only characterized by geogenic CO2 reservoir such as Nyos and Monoun (Cameroon).
    Description: Published
    Description: e102456
    Description: 4V. Vulcani e ambiente
    Description: JCR Journal
    Description: open
    Keywords: bio activity, volcanic lakes, costa rica ; 03. Hydrosphere::03.04. Chemical and biological::03.04.06. Hydrothermal systems
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 22
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    Effect of different seawater Mg2 + concentrations on calcification in two benthic foraminifers (2014)
    Elsevier
    In:  EPIC3Marine Micropaleontology, Elsevier, 113, pp. 56-64, ISSN: 0377-8398
    Details
    Publication Date: 2019-08-19
    Description: Magnesium, incorporated in foraminiferal calcite (Mg/CaCC), is used intensively to reconstruct past seawater temperatures but, in addition to temperature, the Mg/CaCC of foraminiferal tests also depends on the ratio of Mg and Ca in seawater (Mg/CaSW). The physiological mechanisms responsible for these proxy relationships are still unknown. This culture study investigates the impact of different seawater [Mg2 +] on calcification in two benthic foraminiferal species precipitating contrasting Mg/CaCC: Ammonia aomoriensis, producing low-Mg calcite and Amphistegina lessonii, producing intermediate-Mg calcite. Foraminiferal growth and test thickness were determined and, Mg/Ca was analyzed using Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS). Results show that at present-day seawater Mg/CaSW of ~ 5, both species have highest growth rates, reflecting their adaptation to modern seawater element concentrations. Test thickness is not significantly affected by different Mg/CaSW. The relationship between Mg/CaSW and Mg/CaCC shows a distinct positive y-axis intercept, possibly reflecting at least two processes involved in foraminiferal biomineralization. The associated Mg partition (DMg) changes non-linearly with increasing Mg/CaSW, hence suggesting that the DMg is best described by an exponential function approaching an asymptote.
    Repository Name: EPIC Alfred Wegener Institut
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  • 23
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    Modeling organic iron-binding ligands in a three-dimensional biogeochemical ocean model (2014)
    Elsevier
    In:  EPIC3Marine Chemistry, Elsevier, ISSN: 0304-4203
    Details
    Publication Date: 2015-01-05
    Description: Most dissolved iron in the ocean is bound to organic molecules with strong conditional stability constants, known as ligands that are found at concentrations ranging from 0.2 to more than 10 nmol L− 1. In this work we report the first mechanistic description of ligand dynamics in two three-dimensional models of ocean biogeochemistry and circulation. The model for ligands is based on the concept that ligands are produced both from organic matter remineralization and phytoplankton processes, and that they are lost through bacterial and photochemical degradation, as well as aggregation and to some extent in the process of phytoplankton uptake of ligand-bound iron. A comparison with a compilation of in-situ measurements shows that the model is able to reproduce some large-scale features of the observations, such as a decrease in ligand concentrations along the conveyor belt circulation in the deep ocean, lower surface and subsurface values in the Southern Ocean, or higher values in the mesopelagic than in the abyssal ocean. Modeling ligands prognostically (as opposed to assuming a uniform ligand concentration) leads to a more nutrient-like profile of iron that is more in accordance with data. It however, also leads to higher surface concentrations of dissolved iron and negative excess ligand L⁎ in some ocean regions. This is probably an indication that with more realistic and higher ligand concentrations near the surface, as opposed to the traditionally chosen low uniform concentration, iron modelers will have to re-evaluate their assumption of low scavenging rates for iron. Given their sensitivity to environmental conditions, spatio-temporal variations in ligand concentrations have the potential to impact primary production via changes in iron limitation.
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  • 24
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    Evaluation of long chain 1,14-alkyl diols in marine sediments as indicators for upwelling and temperature (2014)
    Elsevier
    In:  EPIC3Organic Geochemistry, Elsevier, 76, pp. 39-47, ISSN: 0146-6380
    Details
    Publication Date: 2015-01-13
    Description: Long chain alkyl diols form a group of lipids occurring widely in marine environments. Recent studies have suggested several palaeoclimatological applications for proxies based on their distributions, but have also revealed uncertainty about their applicability. Here we evaluate the use of long chain 1,14-alkyl diol indices for reconstruction of temperature and upwelling conditions by comparing index values, obtained from a comprehensive set of marine surface sediments, with environmental factors such as sea surface temperature (SST), salinity and nutrient concentration. Previous studies of cultures indicated a strong effect of temperature on the degree of saturation and the chain length distribution of long chain 1,14-alkyl diols in Proboscia spp., quantified as the diol saturation index (DSI) and diol chain length index (DCI), respectively. However, values of these indices for surface sediments showed no relationship with annual mean SST of the overlying water. It remains unknown as to what determines the DSI, although our data suggest that it may be affected by diagenesis, while the relationship between temperature and DCI may be different for different Proboscia species. In addition, contributions from algae other than Proboscia diatoms may affect both indices, although our data provide no direct evidence for additional long chain 1,14-alkyl diol sources. Two other indices using the abundance of 1,14-diols vs. 1,13-diols and C30 1,15- diols have been applied previously as indicators for upwelling intensity at different locations. The geographical distribution of their values supports the use of 1,14 diols vs. 1,13 diols [C28 + C30 1,14-diols]/[(C28 + C30 1,13-diols) + (C28 + C30 1,14-diols)] as a general indicator for high nutrient or upwelling conditions.
    Repository Name: EPIC Alfred Wegener Institut
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  • 25
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    Cenozoic Arctic Ocean Climate History: Some highlights from the IODP Arctic Coring Expedition (ACEX) (2014)
    Elsevier
    In:  EPIC3Developments in Marine Geology, Elsevier, 7, pp. 259-293, ISSN: ISBN: 978-0-444-62617-2
    Details
    Publication Date: 2015-04-23
    Repository Name: EPIC Alfred Wegener Institut
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  • 26
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    Generation of unusual branched long chain alkanes from hydrous pyrolysis of anammox bacterial biomass (2014)
    Elsevier
    In:  EPIC3Organic Geochemistry, Elsevier, 76, pp. 136-145
    Details
    Publication Date: 2015-03-08
    Repository Name: EPIC Alfred Wegener Institut
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  • 27
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    Temperature trends during the Present and Last Interglacial periods – a multi-model-data comparison (2014)
    Elsevier
    In:  EPIC3Quaternary Science Reviews, Elsevier, 99, pp. 224-243, ISSN: 0277-3791
    Details
    Publication Date: 2015-12-14
    Description: Though primarily driven by insolation changes associated with well-known variations in Earth's astronomical parameters, the response of the climate system during interglacials includes a diversity of feedbacks involving the atmosphere, ocean, sea ice, vegetation and land ice. A thorough multi-model-data comparison is essential to assess the ability of climate models to resolve interglacial temperature trends and to help in understanding the recorded climatic signal and the underlying climate dynamics. We present the first multi-model-data comparison of transient millennial-scale temperature changes through two intervals of the Present Interglacial (PIG; 8–1.2 ka) and the Last Interglacial (LIG; 123–116.2 ka) periods. We include temperature trends simulated by 9 different climate models, alkenone-based temperature reconstructions from 117 globally distributed locations (about 45% of them within the LIG) and 12 ice-core-based temperature trends from Greenland and Antarctica (50% of them within the LIG). The definitions of these specific interglacial intervals enable a consistent inter-comparison of the two intervals because both are characterised by minor changes in atmospheric greenhouse gas concentrations and more importantly by insolation trends that show clear similarities. Our analysis shows that in general the reconstructed PIG and LIG Northern Hemisphere mid-to-high latitude cooling compares well with multi-model, mean-temperature trends for the warmest months and that these cooling trends reflect a linear response to the warmest-month insolation decrease over the interglacial intervals. The most notable exception is the strong LIG cooling trend reconstructed from Greenland ice cores that is not simulated by any of the models. A striking model-data mismatch is found for both the PIG and the LIG over large parts of the mid-to-high latitudes of the Southern Hemisphere where the data depicts negative temperature trends that are not in agreement with near zero trends in the simulations. In this area, the positive local summer insolation trend is counteracted in climate models by an enhancement of the Southern Ocean summer sea-ice cover and/or an increase in Southern Ocean upwelling. If the general picture emerging from reconstructions is realistic, then the model-data mismatch in mid and high Southern Hemisphere latitudes implies that none of the models is able to resolve the correct balance of these feedbacks, or, alternatively, that interglacial Southern Hemisphere temperature trends are driven by mechanisms which are not included in the transient simulations, such as changes in the Antarctic ice sheet or meltwater-induced changes in the overturning circulation.
    Repository Name: EPIC Alfred Wegener Institut
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  • 28
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    New aeromagnetic view of the geological fabric of southern Dronning Maud Land and Coats Land, East Antarctica (2014)
    Elsevier
    In:  EPIC3Gondwana Research, Elsevier, 25(1), pp. 358-367, ISSN: 1342-937X
    Details
    Publication Date: 2017-10-17
    Description: The ice shield of Antarctica, which measures several kilometers in thickness, presents a challenge when attempting to unravel the subglacial geology. Here, we report about systematic airborne magnetic surveys conducted over the last decade, which investigated a significant part of Dronning Maud Land (DML), imaging for the first time the crustal architecture of the interior of this sector of East Antarctica. High-resolution data reveal parallel, elongated magnetic anomalies in southeastern DML. These NW–SE trending anomalies can be traced farther east into sparser Russian magnetic data sets. Several high amplitude magnetic anomalies with values above 400 nT have been observed in southwesternDML and Coats Land. They differ clearly inwavelength and amplitudes fromthe magnetic pattern found in the east and do not show any evidence of a Pan-African orogenic belt or suture zone connecting the Shackleton Range with easternDML, as hypothesized in several studies. This leads to the assumption of the existence of a hitherto unrecognized large tectonic province in southeastern DML.Whereas an over 100 km long magnetic lineament in the interior of the DronningMaud Landmay reflect a major shear zone akin to the Pan-African age Heimefrontfjella shear zone. Both findings bring new evidences to the still open question about the amalgation of East and West Gondwana. In addition, the magnetic data allow mapping the eastern extent of the presumable cratonic province of Coats Land, a region considered as a key piercing point for reconstructions of Rodinia. Furthermore, the Beattie Magnetic Anomaly in southern Africa is assumed to continue into East Antarctica. Two magnetic highs in western DML are identified as possible eastward continuation of this prominent anomaly.
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  • 29
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    Reconstruction of changes in the Weddell Sea sector of the Antarctic Ice Sheet since the Last Glacial Maximum (2014)
    Elsevier
    In:  EPIC3Quaternary Science Reviews, Elsevier, 100, pp. 111- 136, ISSN: 0277-3791
    Details
    Publication Date: 2018-08-10
    Description: Abstract The Weddell Sea sector is one of the main formation sites for Antarctic Bottom Water and an outlet for about one fifth of Antarctica's continental ice volume. Over the last few decades, studies on glacial–geological records in this sector have provided conflicting reconstructions of changes in ice-sheet extent and ice-sheet thickness since the Last Glacial Maximum (LGM at ca 23–19 calibrated kiloyears before present, cal ka BP). Terrestrial geomorphological records and exposure ages obtained from rocks in the hinterland of the Weddell Sea, ice-sheet thickness constraints from ice cores and some radiocarbon dates on offshore sediments were interpreted to indicate no significant ice thickening and locally restricted grounding-line advance at the LGM. Other marine geological and geophysical studies concluded that subglacial bedforms mapped on the Weddell Sea continental shelf, subglacial deposits and sediments over-compacted by overriding ice recovered in cores, and the few available radiocarbon ages from marine sediments are consistent with major ice-sheet advance at the LGM. Reflecting the geological interpretations, different ice-sheet models have reconstructed conflicting {LGM} ice-sheet configurations for the Weddell Sea sector. Consequently, the estimated contributions of ice-sheet build-up in the Weddell Sea sector to the {LGM} sea-level low-stand of ~130 m vary considerably. In this paper, we summarise and review the geological records of past ice-sheet margins and past ice-sheet elevations in the Weddell Sea sector. We compile marine and terrestrial chronological data constraining former ice-sheet size, thereby highlighting different levels of certainty, and present two alternative scenarios of the {LGM} ice-sheet configuration, including time-slice reconstructions for post-LGM grounding-line retreat. Moreover, we discuss consistencies and possible reasons for inconsistencies between the various reconstructions and propose objectives for future research. The aim of our study is to provide two alternative interpretations of glacial–geological datasets on Antarctic Ice-Sheet History for the Weddell Sea sector, which can be utilised to test and improve numerical ice-sheet models.
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  • 30
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    Neoglacial change in deep water exchange and increase of sea-ice transport through eastern Fram Strait: evidence from radiogenic isotopes (2014)
    Elsevier
    In:  EPIC3Quaternary Science Reviews, Elsevier, 92, pp. 190-207, ISSN: 0277-3791
    Details
    Publication Date: 2014-06-02
    Description: Sediment core MSM5/5-712 from the West Spitsbergen continental margin has been investigated at high resolution for its seawater-derived neodymium (Nd) and lead (Pb) isotope compositions stored in ferromanganese oxyhydroxide coatings of the sediment particles to reconstruct Holocene changes in the sources and mixing of bottom waters passing the site. The radiogenic isotope data are used in combination with a multitude of proxy indicators for the climatic and oceanographic development of the eastern Fram Strait during the past 8500 years. To calibrate the downcore data, seawater and core top samples from the area were analysed for their radiogenic isotope compositions. Core top leachates reveal relatively high (more radiogenic) Nd isotope compositions between εNd −9.7 and −9.1, which are higher than present-day seawater εNd in eastern Fram Strait (−12.6 to −10.5) and indicate that the seawater values have only been established very recently. The core top data agree well with the downcore signatures within the uppermost 40 cm of the sediment core (εNd −9.1 to −8.8) indicating a reduced inflow of waters from the Nordic Seas, concurrent with cool conditions and a south-eastward shift of the marginal ice zone after ca 2.8 cal ka BP (Late Holocene). High sea-ice abundances in eastern Fram Strait are coeval with the well-known Neoglacial trend in the northern North Atlantic region. In contrast, warmer conditions of the late Early to Mid-Holocene were accompanied by lower (less radiogenic) εNd signatures of the bottom waters indicating an increased admixture from the Nordic Seas (−10.6 to −10.1). A shift to significantly more radiogenic εNd signatures of the detrital material also occurred at 3 cal ka BP and was accompanied by a marked increase in supply of fine-grained ice-rafted material (IRF) from the Arctic Ocean to the core site. The most likely source areas for this radiogenic material are the shallow Arctic shelves, in particular the Kara Sea shelf. The evolution of the Pb isotope compositions of past seawater was dominated by local signatures characterized by high 208, 207, 206Pb/204Pb values during the warm Early and Mid-Holocene periods related to enhanced chemical weathering on Svalbard and high glacial and riverine input derived from young granitic (more radiogenic) material to the West Spitsbergen margin. At 3 cal ka BP both detrital and seawater Pb isotope data changed towards more Kara Sea-like signatures.
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  • 31
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    A multibiomarker approach to the assessment of pollution impacts in two Baltic Sea coastal areas in Sweden using caged mussels (Mytilus trossulus) (2014)
    Elsevier
    In:  EPIC3Science of The Total Environment, Elsevier, 473-47, pp. 398-409, ISSN: 0048-9697
    Details
    Publication Date: 2019-07-17
    Description: Blue mussels (Mytilus trossulus) were transplanted in cages for three months in two Swedish coastal areas in the Bothnian Sea (northern Baltic Sea) to investigate the interactions between analysed environmental chemicals and biological responses. A wide array of biological parameters (biomarkers) including antioxidant and biotransformation activity, geno-, cyto- and neurotoxic effects, phagocytosis, bioenergetic status and heart rate were measured to detect the possible effects of contaminants. Integrated Biomarker Response index and Principal Component Analysis performed on the individual biological response data were able to discriminate between the two study areas as well as the contaminated sites from their respective local reference sites. The two contaminated sites outside the cities of Sundsvall (station S1) and Gävle (station G1) were characterised by different biomarker response patterns. Mussels at station S1 showed a low condition index, increased heart rate recovery time and phagocytosis activity coinciding with the highest tissue concentrations of some trace metals, polycyclic aromatic hydrocarbons and organotins. At station G1 the highest organochlorine pesticide concentration was recorded as well as elevations in glutathione S-transferase activity, thiamine content and low lysosomal membrane stability. Significant variability in the geno- and cytotoxic responses and bioenergetic status was also observed at the different caging stations. The results obtained suggest that different chemical mixtures present in the study areas cause variable biological response patterns in organisms.
    Repository Name: EPIC Alfred Wegener Institut
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  • 32
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    A second-order accurate in time IMplicit–EXplicit (IMEX) integration scheme for sea ice dynamics (2014)
    Elsevier
    In:  EPIC3Journal of Computational Physics, Elsevier, 263, pp. 375-392, ISSN: 0021-9991
    Details
    Publication Date: 2019-07-17
    Description: Current sea ice models use numerical schemes based on a splitting in time between the momentum and continuity equations. Because the ice strength is explicit when solving the momentum equation, this can create unrealistic ice stress gradients when using a large time step. As a consequence, noise develops in the numerical solution and these models can even become numerically unstable at high resolution. To resolve this issue, we have implemented an iterated IMplicit–EXplicit (IMEX) time integration method. This IMEX method was developed in the framework of an already implemented Jacobian-free Newton–Krylov solver. The basic idea of this IMEX approach is to move the explicit calculation of the sea ice thickness and concentration inside the Newton loop such that these tracers evolve during the implicit integration. To obtain second-order accuracy in time, we have also modified the explicit time integration to a second-order Runge–Kutta approach and by introducing a second-order backward difference method for the implicit integration of the momentum equation. These modifications to the code are minor and straightforward. By comparing results with a reference solution obtained with a very small time step, it is shown that the approximate solution is second-order accurate in time. The new method permits to obtain the same accuracy as the splitting in time but by using a time step that is 10 times larger. Results show that the second-order scheme is more than five times more computationally efficient than the splitting in time approach for an equivalent level of error.
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  • 33
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    A laboratory study of ikaite (CaCO3·6H2O) precipitation as a function of pH, salinity, temperature and phosphate concentration (2014)
    Elsevier
    In:  EPIC3Marine Chemistry, Elsevier, 162, pp. 10-18, ISSN: 0304-4203
    Details
    Publication Date: 2014-07-30
    Description: Ikaite (CaCO3·6H2O) has only recently been discovered in sea ice, in a study that also provided first direct evidence of CaCO3 precipitation in sea ice. However, little is as yet known about the impact of physico-chemical processes on ikaite precipitation in sea ice. Our study focused on how the changes in pH, salinity, temperature and phosphate (PO4) concentration affect the precipitation of ikaite. Experiments were set up at pH from 8.5 to 10.0, salinities from 0 to 105 (in both artificial seawater (ASW) and NaCl medium), temperatures from 0 to −4 °C andPO4 concentrations from0 to 50 μmol kg−1. The results show that in ASW, calcium carbonate was precipitated as ikaite under all conditions. In the NaCl medium, the precipitates were ikaite in the presence of PO4 and vaterite in the absence of PO4. The onset time (τ) at which ikaite precipitation started, decreased nonlinearly with increasing pH. In ASW, τ increased with salinity. In the NaCl medium, τ first increased with salinity up to salinity 70 and subsequently decreased with a further increase in salinity; it was longer in ASW than in the NaCl medium under the same salinity. τ did not vary with temperature or PO4 concentration. These results indicate that ikaite is very probably the only phase of calcium carbonate formed in sea ice. PO4 is not, as previously postulated, crucial for ikaite formation in sea ice. The change in pH and salinity is the controlling factor for ikaite precipitation in sea ice. Within the ranges investigated in this study, temperature and PO4 concentration do not have a significant impact on ikaite precipitation.
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  • 34
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    Factors influencing particulate lipid production in the East Atlantic Ocean. (2014)
    Elsevier
    In:  EPIC3Deep-Sea Research I, Elsevier, 89, pp. 56-67, ISSN: 0967-0637
    Details
    Publication Date: 2014-05-21
    Description: Extensive analyses of particulate lipids and lipid classes were conducted to gain insight into lipid production and related factors along the biogeochemical provinces of the Eastern Atlantic Ocean. Data are supported by particulate organic carbon (POC), chlorophyll a (Chl a), phaeopigments, Chl a concentrations and carbon content of eukaryotic micro-, nano- and picophytoplankton, including cell abundances for the latter two and for cyanobacteria and prokaryotic heterotrophs. We focused on the productive ocean surface (2 m depth and deep Chl a maximum (DCM)). Samples from the deep ocean provided information about the relative reactivity and preservation potential of particular lipid classes. Surface and DCM particulate lipid concentrations (3.5–29.4 μg L−1) were higher than in samples from deep waters (3.2–9.3 μg L−1) where an increased contribution to the POC pool was observed. The highest lipid concentrations were measured in high latitude temperate waters and in the North Atlantic Tropical Gyral Province (13–25°N). Factors responsible for the enhanced lipid synthesis in the eastern Atlantic appeared to be phytoplankton size (micro, nano, pico) and the low nutrient status with microphytoplankton having the most expressed influence in the surface and eukaryotic nano- and picophytoplankton in the DCM layer. Higher lipid to Chl a ratios suggest enhanced lipid biosynthesis in the nutrient poorer regions. The various lipid classes pointed to possible mechanisms of phytoplankton adaptation to the nutritional conditions. Thus, it is likely that adaptation comprises the replacement of membrane phospholipids by non-phosphorus containing glycolipids under low phosphorus conditions. The qualitative and quantitative lipid compositions revealed that phospholipids were the most degradable lipids, and their occurrence decreased with increasing depth. In contrast, wax esters, possibly originating from zooplankton, survived downward transport probably due to the fast sinking rate of particles (fecal pellets). The important contribution of glycolipids in deep waters reflected their relatively stable nature and degradation resistance. A lipid-based proxy for the lipid degradative state (Lipolysis Index) suggests that many lipid classes were quite resistant to degradation even in the deep ocean.
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  • 35
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    An assessment of global and regional sea level for years 1993–2007 in a suite of interannual CORE-II simulations (2014)
    Elsevier
    In:  EPIC3Ocean Modelling, Elsevier, 78, pp. 35-89, ISSN: 1463-5003
    Details
    Publication Date: 2014-05-26
    Description: We provide an assessment of sea level simulated in a suite of global ocean-sea ice models using the interannual CORE atmospheric state to determine surface ocean boundary buoyancy and momentum fluxes. These CORE-II simulations are compared amongst themselves as well as to observation-based estimates. We focus on the final 15 years of the simulations (1993–2007), as this is a period where the CORE-II atmospheric state is well sampled, and it allows us to compare sea level related fields to both satellite and in situ analyses. The ensemble mean of the CORE-II simulations broadly agree with various global and regional observation-based analyses during this period, though with the global mean thermosteric sea level rise biased low relative to observation-based analyses. The simulations reveal a positive trend in dynamic sea level in the west Pacific and negative trend in the east, with this trend arising from wind shifts and regional changes in upper 700 m ocean heat content. The models also exhibit a thermosteric sea level rise in the subpolar North Atlantic associated with a transition around 1995/1996 of the North Atlantic Oscillation to its negative phase, and the advection of warm subtropical waters into the subpolar gyre. Sea level trends are predominantly associated with steric trends, with thermosteric effects generally far larger than halosteric effects, except in the Arctic and North Atlantic. There is a general anti-correlation between thermosteric and halosteric effects for much of the World Ocean, associated with density compensated changes.
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  • 36
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    Morphological and molecular characterization of three new Azadinium species (Amphidomataceae, Dinophyceae) from the Irminger Sea (2014)
    Elsevier
    In:  EPIC3Protist, Elsevier, 165(4), pp. 417-444, ISSN: 1434-4610
    Details
    Publication Date: 2014-06-11
    Description: Some species of planktonic Azadinium produce azaspiracids (AZAs), a group of lipophilic phycotoxins causing human poisoning after mussel consumption. We describe three new species from the North Atlantic, all of which shared the same Kofoidean plate pattern characteristic for Azadinium: Po, cp, X, 4´, 3a, 6´´, 6C, 5S, 6´´´, 2´´´´. Azadinium trinitatum sp. nov. was mainly characterized by the presence of an antapical spine and by the position of the ventral pore at the left distal end of the pore plate in a cavity of plate 1´. Azadinium cuneatum sp. nov. had a conspicuously formed first apical plate, which was asymmetrically elongated and tapered on its left lateral side with a ventral pore located at the tip of this elongated 1´ plate. Azadinium concinnum sp. nov. was of particular small size (〈 10 µm) and characterized by an anteriorly elongated anterior sulcal plate and by large and symmetric precingular plates. The ventral pore was located inside the apical pore plate on the cells’ right lateral side. Molecular phylogenetics as inferred from concatenated SSU, ITS, and LSU sequence data supported the distinctiveness of the three new species. None of the new species produced any known AZAs in measurable amounts.
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  • 37
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    When shape matters: strategies of different Antarctic ascidians morphotypes to deal with sedimentation (2014)
    Elsevier
    In:  EPIC3Marine Environmental Research, Elsevier, 99, pp. 179-187, ISSN: 0141-1136
    Details
    Publication Date: 2014-09-25
    Description: Climate change leads to increased melting of tidewater glaciers in theWestern Antarctic Peninsula region and sediment bearing glacial melt waters negatively affects filter feeding species as solitary ascidians. In previous work the erect-forms Molgula pedunculata and Cnemidocarpa verrucosa (Order Stolidobranchiata) appeared more sensitive than the flat form Ascidia challengeri (Order Phlebobranchiata). Sedimentation exposure is expected to induce up-regulation of anaerobic metabolism by obstructing the organs of gas exchange (environmental hypoxia) or causes enhanced squirting activity (functional hypoxia). In this study we evaluated the possible relationship between ascidian morphotype and their physiological response to sedimentation. Together with some behavioural observations, we analysed the response of anaerobic metabolic parameters (lactate formation and glycogen consumption) in different tissues of three Antarctic ascidians, exposed to high sediment concentrations (200 mgL�1). The results were compared to experimental hypoxia (10% pO2) and exercise (induced muscular contraction) effects, in order to discriminate the effect of sediment on each species and morpho-type (erect vs. flat forms). Our results suggest that the styled (erect) C. verrucosa increases muscular squirting activity in order to expulse excessive material, while the flat-form A. challengeri reacts more passively by down-regulating its aerobic metabolism under sediment exposure. Contrary, the erect ascidian M. pedunculata did not show any measurable response to the treatments, indicating that filtration and ingestion activities were not reduced or altered even under high sedimentation (low energetic material) which could be disadvantageous on the long-term and could explain why M. pedunculata densities decline in the study area.
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  • 38
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    Indications for algae-degrading benthic microbial communities in deep-sea sediments along the Antarctic Polar Front (2014)
    Elsevier
    In:  EPIC3Deep Sea Research Part II: Topical Studies in Oceanography, Elsevier, 108, pp. 6-16, ISSN: 0967-0645
    Details
    Publication Date: 2014-11-11
    Description: Phytoplankton blooms in surface waters of the oceans are known to influence the food web and impact microbial as well as zooplankton communities. Numerous studies have investigated the fate of phytoplankton-derived organic matter in surface waters and shelf sediments, however, little is known about the effect of sinking algal biomass on microbial communities in deep-sea sediments. Here, we analyzed sediments of four regions in the Southern Atlantic Ocean along the Antarctic Polar Front that had different exposures to phytoplankton bloom derived organic matter. We investigated the microbial communities in these sediments using high-throughput sequencing of 16S rRNA molecules to determine microorganisms that were active and catalyzed reporter deposition fluorescence in situ hybridization to infer their abundance and distribution. The sediments along the Antarctic Polar Front harbored microbial communities that were highly diverse and contained microbial clades that seem to preferably occur in regions of high primary productivity. We showed that organisms affiliated with the gammaproteobacterial clade NOR5/OM60, which is known from surface waters and coastal sediments, thrive in the deep-sea. Benthic deep-sea NOR5 were abundant, diverse, distinct from pelagic NOR5 and likely specialized on the degradation of phytoplankton-derived organic matter, occupying a similar niche as their pelagic relatives. Algal detritus seemed to not only fuel the benthic microbial communities of large areas in the deep-sea, but also to influence communities locally, as we found a peak in Flavobacteriaceae-related clades that also include degraders of algal biomass. The results strongly suggest that phytoplankton-derived organic matter was rapidly exported to the deep-sea, nourished distinct benthic microbial communities and seemed to be the main energy source for microbial life in the seafloor of vast abyssal regions along the Antarctic Polar Front.
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  • 39
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    Water column structure and statistics of Denmark Strait Overflow Water cyclones (2014)
    Elsevier
    In:  EPIC3Deep Sea Research Part I: Oceanographic Research Papers, Elsevier, 84, pp. 110-126, ISSN: 0967-0637
    Details
    Publication Date: 2014-04-04
    Description: Data from seven moorings deployed across the East Greenland shelfbreak and slope 280 km downstream of Denmark Strait are used to investigate the characteristics and dynamics of Denmark Strait Overflow Water (DSOW) cyclones. On average, a cyclone passes the mooring array every other day near the 900 m isobath, dominating the variability of the boundary current system. There is considerable variation in both the frequency and location of the cyclones on the slope, but no apparent seasonality. Using the year-long data set from September 2007 to October 2008, we construct a composite DSOW cyclone that reveals the average scales of the features. The composite cyclone consists of a lens of dense overflow water on the bottom, up to 300 m thick, with cyclonic flow above the lens. The azimuthal flow is intensified in the middle and upper part of the water column and has the shape of a Gaussian eddy with a peak depth-mean speed of 0.22 m/s at a radius of 7.8 km. The lens is advected by the mean flow of 0.27 m/s and self propagates at 0.45 m/s, consistent with the topographic Rossby wave speed and the Nof speed. The total translation velocity along the East Greenland slope is 0.72 m/s. The self-propagation speed exceeds the cyclonic swirl speed, indicating that the azimuthal flow cannot kinematically trap fluid in the water column above the lens. This implies that the dense water anomaly and the cyclonic swirl velocity are dynamically linked, in line with previous theory. Satellite sea surface temperature (SST) data are investigated to study the surface expression of the cyclones. Disturbances to the SST field are found to propagate less quickly than the in-situ DSOW cyclones, raising the possibility that the propagation of the SST signatures is not directly associated with the cyclones.
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  • 40
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    New tools for the reconstruction of Pleistocene Antarctic sea ice (2014)
    Elsevier
    In:  EPIC3Palaeogeography, Palaeoclimatology, Palaeoecology, Elsevier, 399, pp. 260-283, ISSN: 0031-0182
    Details
    Publication Date: 2014-05-06
    Description: Based on the quantitative analysis of diatom assemblages preserved in 274 surface sediment samples recovered in the Pacific, Atlantic and western Indian sectors of the Southern Ocean we have defined a new reference database for quantitative estimation of late-middle Pleistocene Antarctic sea ice fields using the transfer function technique. The Detrended Canonical Analysis (DCA) of the diatom data set points to a unimodal distribution of the diatom assemblages. Canonical Correspondence Analysis (CCA) indicates that not only winter sea ice (WSI) but also summer sea surface temperature (SSST) represent the most prominent environmental variables that control the spatial species distribution. To test the applicability of transfer functions for sea ice reconstruction in terms of concentration and occurrence probability we applied four different methods, the Imbrie and Kipp Method (IKM), the Modern Analog Technique (MAT), Weighted Averaging (WA), and Weighted Averaging Partial Least Squares (WAPLS), using logarithm-transformed diatom data and satellite-derived (1981-2010) sea ice data as a reference. The best performance for IKM results was obtained using a subset of 172 samples with 28 diatom taxa/taxa groups, quadratic regression and a three-factor model (IKM-D172/28/3q) resulting in root mean square errors of prediction (RMSEP) of 7.27% and 11.4% for WSI and summer sea ice (SSI) concentration, respectively. MAT estimates were calculated with different numbers of analogs (4, 6) using a 274-sample/28-taxa reference data set (MAT-D274/28/4an, -6an) resulting in RMSEP´s ranging from 5.52% (4an) to 5.91% (6an) for WSI as well as 8.93% (4an) to 9.05% (6an) for SSI. WA and WAPLS performed less well with the D274 data set, compared to MAT, achieving WSI concentration RMSEP´s of 9.91% with WA and 11.29% with WAPLS, recommending the use of IKM and MAT. The application of IKM and MAT to surface sediment data revealed strong relations to the satellite-derived winter and summer sea ice field. Sea ice reconstructions performed on an Atlantic- and a Pacific Southern Ocean sediment core, both documenting sea ice variability over the past 150,000 years (MIS 1 – MIS 6), resulted in similar glacial/interglacial trends of IKM and MAT-based sea-ice estimates. On the average, however, IKM estimates display smaller WSI and slightly higher SSI concentration and probability at lower variability in comparison with MAT. This pattern is a result of different estimation techniques with integration of WSI and SSI signals in one single factor assemblage by applying IKM and selecting specific single samples, thus keeping close to the original diatom database and included variability, by MAT. In contrast to the estimation of WSI, reconstructions of past SSI variability remains weaker. Combined with diatom-based estimates, the abundance and flux pattern of biogenic opal represents an additional indication for the WSI and SSI extent.
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  • 41
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    Spatial and seasonal population dynamics of sympatric Jassa species (Crustacea, Amphipoda) (2014)
    Elsevier
    In:  EPIC3Journal of Experimental Marine Biology and Ecology, Elsevier, 459, pp. 8-16, ISSN: 0022-0981
    Details
    Publication Date: 2014-06-02
    Description: Marine fouling communities are often characterised by dense aggregations of tube-building amphipod species of the genus Jassa. Although some species of this genus coexist in high densities, the development and relationships of sympatric populations are largely unknown. The current field study tested for the effects of exposure duration, seasonality and spatial heterogeneity on community composition, population structure and recruitment of three coexisting Jassa species. The establishment and succession of Jassa-dominated fouling communities on artificial substratum (PVC panels) were studied over two one-year periods off the island of Helgoland (German Bight, North Sea). At different seasonal times, and for different periods of time, panels were exposed at three stations: an exposed station (near water surface), a benthic station in 10 m water depth, and a sheltered station (near water surface). Jassa falcata was the dominant species at the benthic station in 10 m water depth, whereas Jassa marmorata and Jassa herdmani were more abundant on panels which were positioned near the water surface (exposed and sheltered station). The two latter species showed higher abundances at the exposed than at the sheltered station, although J. marmorata was always clearly the dominant species. The differences in the spatial distribution patterns of the three species may partly result from direct interspecific competition for space. Populations of all three Jassa species exhibited strong temporal changes in both abundances and population structure (sex ratio, proportions of reproductively active individuals, male morphs), most likely caused by seasonal factors. Rapid colonisation of free artificial surfaces was observed nearly throughout the year. Intensity of colonisation, however, followed a distinct seasonal pattern with a maximum in the summer months. Recruitment probably occurred via drifting juveniles which originated from amphipod communities in the surroundings. The observed differences among the species may mainly reflect adaptations to different environmental conditions. These differences, however, may also contribute to a stable long-term coexistence via some degree of resource partitioning along with ‘intermediate disturbance’ events.
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  • 42
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    Predictive habitat modelling of humpback (Megaptera novaeangliae) and Antarctic minke (Balaenoptera bonaerensis) whales in the Southern Ocean as a planning tool for seismic surveys (2014)
    Elsevier
    In:  EPIC3Deep Sea Research Part I: Oceanographic Research Papers, Elsevier, 91, pp. 101-114, ISSN: 0967-0637
    Details
    Publication Date: 2014-08-18
    Description: Seismic surveys are frequently a matter of concern regarding their potentially negative impacts on marine mammals. In the Southern Ocean, which provides a critical habitat for several endangered cetacean species, seismic research activities are undertaken at a circumpolar scale. In order to minimize impacts of these surveys, pre-cruise planning requires detailed, spatio-temporally resolved knowledge on the likelihood of encountering these species in the survey area. In this publication we present predictive habitat modelling as a potential tool to support decisions for survey planning. We associated opportunistic sightings (2005–2011) of humpback (Megaptera novaeangliae, N=93) and Antarctic minke whales (Balaenoptera bonaerensis, N=139) with a range of static and dynamic environmental variables. A maximum entropy algorithm (Maxent) was used to develop habitat models and to calculate daily basinwide/circumpolar prediction maps to evaluate how species-specific habitat conditions evolved throughout the spring and summer months. For both species, prediction maps revealed considerable changes in habitat suitability throughout the season. Suitable humpback whale habitat occurred predominantly in ice-free areas, expanding southwards with the retreating sea ice edge, whereas suitable Antarctic minke whale habitat was consistently predicted within sea ice covered areas. Daily, large-scale prediction maps provide a valuable tool to design layout and timing of seismic surveys as they allow the identification and consideration of potential spatio-temporal hotspots to minimize potential impacts of seismic surveys on Antarctic cetacean species.
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  • 43
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    New constraints on the timing of West Antarctic Ice Sheet retreat in the eastern Amundsen Sea since the Last Glacial Maximum (2014)
    Elsevier
    In:  EPIC3Global and Planetary Change, Elsevier, 122, pp. 224-237, ISSN: 0921-8181
    Details
    Publication Date: 2018-08-10
    Description: Glaciers flowing into the Amundsen Sea Embayment (ASE) account for 〉35% of the total discharge of the West Antarctic Ice Sheet (WAIS) and have thinned and retreated dramatically over the past two decades. Here we present detailed marine geological data and an extensive new radiocarbon dataset from the eastern ASE in order to constrain the retreat of the WAIS since the Last Glacial Maximum (LGM) and assess the significance of these recent changes. Our dating approach, relying mainly on the acid insoluble organic (AIO) fraction, utilises multi-proxy analyses of the sediments to characterise their lithofacies and determine the horizon in each core that would yield the most reliable age for deglaciation. In total, we dated 69 samples and show that deglaciation of the outer shelf was underway before 20,600 calibrated years before present (cal. yr BP), reaching the mid-shelf by 13,575 cal. yr BP and the inner shelf to within c.150 km of the present grounding line by 10,615 cal. yr BP. The timing of retreat is broadly consistent with previously published radiocarbon dates on biogenic carbonate from the eastern ASE as well as AIO 14C ages from the western ASE and provides new constraints for ice sheet models. The overall retreat trajectory – slow on the outer shelf, more rapid from the middle to inner shelf – clearly highlights the importance of reverse bedslopes in controlling phases of accelerated groundling line retreat. Despite revealing these broad scale trends, the current dataset does not capture detailed changes in ice flow, such as stillstands during grounding line retreat (i.e., deposition of grounding zone wedges) and possible readvances as depicted in the geomorphological record.
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  • 44
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    A community-based geological reconstruction of Antarctic Ice Sheet deglaciation since the Last Glacial Maximum (2014)
    Elsevier
    In:  EPIC3Quaternary Science Reviews, Elsevier, 100, pp. 1-9, ISSN: 0277-3791
    Details
    Publication Date: 2018-08-10
    Description: The Weddell Sea sector is one of the main formation sites for Antarctic Bottom Water and an outlet for about one fifth of Antarctica’s continental ice volume. Over the last few decades, studies on glacialegeological records in this sector have provided conflicting reconstructions of changes in ice-sheet extent and ice-sheet thickness since the Last Glacial Maximum (LGM at ca 23e19 calibrated kiloyears before present, cal ka BP). Terrestrial geomorphological records and exposure ages obtained from rocks in the hinterland of the Weddell Sea, ice-sheet thickness constraints from ice cores and some radiocarbon dates on offshore sediments were interpreted to indicate no significant ice thickening and locally restricted grounding-line advance at the LGM. Other marine geological and geophysical studies concluded that subglacial bedforms mapped on theWeddell Sea continental shelf, subglacial deposits and sediments over-compacted by overriding ice recovered in cores, and the few available radiocarbon ages from marine sediments are consistent with major ice-sheet advance at the LGM. Reflecting the geological interpretations, different icesheet models have reconstructed conflicting LGM ice-sheet configurations for the Weddell Sea sector. Consequently, the estimated contributions of ice-sheet build-up in the Weddell Sea sector to the LGM sealevel low-stand of w130 m vary considerably. In this paper, we summarise and review the geological records of past ice-sheet margins and past icesheet elevations in the Weddell Sea sector. We compile marine and terrestrial chronological data constraining former ice-sheet size, thereby highlighting different levels of certainty, and present two alternative scenarios of the LGM ice-sheet configuration, including time-slice reconstructions for post- LGM grounding-line retreat. Moreover, we discuss consistencies and possible reasons for inconsistencies between the various reconstructions and propose objectives for future research. The aim of our study is to provide two alternative interpretations of glacialegeological datasets on Antarctic Ice- Sheet History for the Weddell Sea sector, which can be utilised to test and improve numerical icesheet models
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  • 45
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    Holocene sea-surface temperature variability in the Chilean fjord region (2014)
    Elsevier
    In:  EPIC3Quaternary Research, Elsevier, 82(2), pp. 342-353, ISSN: 0033-5894
    Details
    Publication Date: 2014-12-16
    Description: Here we provide three new Holocene (11–0 cal ka BP) alkenone-derived sea surface temperature (SST) records from the southernmost Chilean fjord region (50–53°S). SST estimates may be biased towards summer temperature in this region, as revealed by a large set of surface sediments. The Holocene records show consistently warmer than present-day SSTs except for the past ~ 0.6 cal ka BP. However, they do not exhibit an early Holocene temperature optimum as registered further north off Chile and in Antarctica. This may have resulted from a combination of factors including decreased inflow of warmer open marine waters due to lower sea-level stands, enhanced advection of colder and fresher inner fjord waters, and stronger westerly winds. During the mid-Holocene, pronounced short-term variations of up to 2.5°C and a cooling centered at ~ 5 cal ka BP, which coincides with the first Neoglacial glacier advance in the Southern Andes, are recorded. The latest Holocene is characterized by two pronounced cold events centered at ~ 0.6 and 0.25 cal ka BP, i.e., during the Little Ice Age. These cold events have lower amplitudes in the offshore records, suggesting an amplification of the SST signal in the inner fjords.
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  • 46
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    Taxon-specific epibenthic foraminiferal δ18O in the Arctic Ocean: relationship to water masses, deep circulation, and brine release (2014)
    Elsevier
    In:  EPIC3Marine Micropaleontology, Elsevier, 113, pp. 34-43, ISSN: 0377-8398
    Details
    Publication Date: 2014-09-24
    Description: We determined δ18OCib values of live (Rose Bengal stained) and dead epibenthic foraminifera Cibicidoides wuellerstorfi, Cibicides lobatulus, and Cibicides refulgens in surface sediment samples from the Arctic Ocean and the Greenland, Iceland, and Norwegian seas (Nordic Sea). This is the first time that a comprehensive δ18OCib data set is generated and compiled from the Arctic Ocean. For comparison, we defined Atlantic Water (AW), upper Arctic Bottom Water (uABW), and Arctic Bottom water (ABW) by their temperature/salinity characteristics and calculated mean equilibrium calcite δ18Oequ from summer sea-water δ18Ow and in situ temperatures. As a result, in the Arctic environment we compensate for Cibicidoides- and Cibicides-specific offsets from equilibrium calcite of − 0.35 and − 0.55 ‰, respectively. After this taxon-specific adjustment, mean δ18OCib values plausibly reflect the density stratification of principle water masses in the Nordic Sea and Arctic Ocean. In addition, mean δ18OCib from AW not only significantly differs from mean δ18OCib from ABW, but also δ18OCib from within AW differentiates in function of provenience and water mass age. Furthermore, in shallow waters brine-derived low δ18Ow can significantly lower the δ18OCib of Cibicides spp. and thus δ18OCib may serve as a paleobrine indicator. There is no statistically significant difference, however, between deeper water masses mean δ18OCib of the Nordic Sea, and of the Eurasian and Amerasian basins, and no influence of low-δ18Ow brines is recorded in Recent uABW and ABW δ18OCib of C. wuellerstorfi. This may be due to dilution of a low-δ18Ow brine signal in the deep sea, and/or to preferential incorporation of relatively high-δ18Ow brines from high-salinity shelves. Although our data encompass environments with seasonal sea-ice and brine formation supposed to ultimately ventilate the deep Arctic Ocean, δ18OCib from uABW and ABW do not indicate negative excursions. This may challenge hypotheses that call for enhanced Arctic brine release to explain negative benthic δ18O spikes in deep-sea sediments from the late Pleistocene North Atlantic Ocean.
    Repository Name: EPIC Alfred Wegener Institut
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  • 47
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    Facilitation of intraguild prey by its intraguild predator in a three-species Lotka–Volterra model (2014)
    Elsevier
    In:  EPIC3Theoretical Population Biology, Elsevier, 92, pp. 55-61, ISSN: 0040-5809
    Details
    Publication Date: 2018-02-16
    Description: Explaining the coexistence of multiple species in the competition and predation theatre has proven a great challenge. Traditional intraguild predation (IGP) models have only relatively small regions of stable coexistence of all species. Here, we investigate potential additional mechanisms that extend these regions of stable coexistence. We used a 3-species Lotka–Volterra system to which we added an interaction term to model a unidirectional facilitative relationship between the two predators in the IGP. In this modelling study the IG predator was able to precondition a part of the common resource by an instantaneous manipulation, which resulted in the immobilization of the resource species. This mechanism of immobilization facilitated the resource uptake by the IG prey and thus increased its growth rates even in the presence of the common predator. The facilitative relationship of the IG prey by the IG predator produced a stable coexistence of both predators even though the IG prey was an inferior competitor for a common resource, which cannot be attained with the traditional IGP models. Furthermore, our model predicted a 3-species stable coexistence even at high enrichment where no coexistence was found in the basic IGP model. Thus, we showed that diversity of resource traits could significantly alter emergent community patterns via shifts in exploitative competition of IGP-related predators. The described mechanism could potentially lead to a higher efficiency in exploitation of common resources and thus promote higher diversity in a real community.
    Repository Name: EPIC Alfred Wegener Institut
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  • 48
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    The microstructure of polar ice. Part I: Highlights from ice core research (2014)
    Elsevier
    In:  EPIC3Journal of Structural Geology, Elsevier, 61, pp. 2-20, ISSN: 0191-8141
    Details
    Publication Date: 2014-05-06
    Description: Polar ice sheets play a fundamental role in Earth's climate system, by interacting actively and passively with the environment. Active interactions include the creeping flow of ice and its effects on polar geomorphology, global sea level, ocean and atmospheric circulation, and so on. Passive interactions are mainly established by the formation of climate records within the ice, in form of air bubbles, dust particles, salt microinclusions and other derivatives of airborne impurities buried by recurrent snowfalls. For a half-century scientists have been drilling deep ice cores in Antarctica and Greenland for studying such records, which can go back to around a million years. Experience shows, however, that the ice-sheet flow generally disrupts the stratigraphy of the bottom part of deep ice cores, destroying the integrity of the oldest records. For all these reasons glaciologists have been studying the microstructure of polar ice cores for decades, in order to understand the genesis and fate of ice-core climate records, as well as to learn more about the physical properties of polar ice, aiming at better climate-record interpretations and ever more precise models of ice-sheet dynamics. In this Part I we review the main difficulties and advances in deep ice core drilling in Antarctica and Greenland, together with the major contributions of deep ice coring to the research on natural ice microstructures. In particular, we discuss in detail the microstructural findings from Camp Century, Byrd, Dye 3, GRIP, GISP2, NorthGRIP, Vostok, Dome C, EDML, and Dome Fuji, besides commenting also on the earlier results of some pioneering ventures, like the Jungfraujoch Expedition and the Norwegian–British–Swedish Antarctic Expedition, among others. In the companion Part II of this work ( Faria et al., 2014), the review proceeds with a survey of the state-of-the-art understanding of natural ice microstructures and some exciting prospects in this field of research.
    Repository Name: EPIC Alfred Wegener Institut
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  • 49
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    Appraisal of TEX86 and TEX86L thermometries in subpolar and polar regions (2014)
    Elsevier
    In:  EPIC3Geochimica et Cosmochimica Acta, Elsevier, 131, pp. 213-226, ISSN: 0016-7037
    Details
    Publication Date: 2014-06-20
    Description: TEX86 (TetraEther indeX of tetraethers consisting of 86 carbon atoms) is a sea surface temperature (SST) proxy based on the distribution of archaeal isoprenoid glycerol dialkyl glycerol tetraethers (GDGTs). In this study, we appraise the applicability of TEX86 and TEX86L in subpolar and polar regions using surface sediments. We present TEX86 and TEX86L data from 160 surface sediment samples collected in the Arctic, the Southern Ocean and the North Pacific. Most of the SST estimates derived from both TEX86 and TEX86L are anomalously high in the Arctic, especially in the vicinity of Siberian river mouths and the sea ice margin, plausibly due to additional archaeal contributions linked to terrigenous input. We found unusual GDGT distributions at five sites in the North Pacific. High GDGT-0/crenarchaeol and GDGT-2/crenarchaeol ratios at these sites suggest a substantial contribution of methanogenic and/or methanotrophic archaea to the sedimentary GDGT pool here. Apart from these anomalous findings, TEX86 and TEX86L values in the surface sediments from the Southern Ocean and the North Pacific do usually vary with overlaying SSTs. In these regions, the sedimentary TEX86-SST relationship is similar to the global calibration, and the derived temperature estimates agree well with overlaying annual mean SSTs at the sites. However, there is a systematic offset between the regional TEX86L-SST relationships and the global calibration. At these sites, temperature estimates based on the global TEX86L calibration are closer to summer SSTs than annual mean SSTs. This finding suggests that in these subpolar settings a regional TEX86L calibration may be a more suitable equation for temperature reconstruction than the global calibration.
    Repository Name: EPIC Alfred Wegener Institut
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  • 50
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    Telomere-independent ageing in the longest-lived non-colonial animal, Arctica islandica (2014)
    Elsevier
    In:  EPIC3Experimental Gerontology, Elsevier, 51, pp. 38-45, ISSN: 0531-5565
    Details
    Publication Date: 2019-07-17
    Description: The shortening of telomeres as a causative factor in ageing is a widely discussed hypothesis in ageing research. The study of telomere length and its regenerating enzyme telomerase in the longest-lived non-colonial animal on earth, Arctica islandica, should inform whether the maintenance of telomere length plays a role in reaching the extreme maximum lifespan (MLSP) of 〉 500 years in this species. Since longitudinal measurements on living animals cannot be achieved, a cross-sectional analysis of a short-lived (MLSP 40 years from the Baltic Sea) and a long-lived population (MLSP 226 years Northeast of Iceland) and in different tissues of young and old animals from the Irish Sea was performed. A high heterogeneity of telomere length was observed in investigated A. islandica over a wide age range (10–36 years for the Baltic Sea, 11–194 years for Irish Sea, 6–226 years for Iceland). Constant telomerase activity and telomere lengths were detected at any age and in different tissues; neither correlated with age or population habitat. Stable telomere maintenance might contribute to the long lifespan of A. islandica. Telomere dynamics are no explanation for the distinct MLSPs of the examined populations and thus the cause of it remains to be investigated.
    Repository Name: EPIC Alfred Wegener Institut
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  • 51
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    Evaluation of long chain 1, 14-alkyl diols in marine sediments as indicators for upwelling and temperature (2014)
    Elsevier
    In:  EPIC3Organic Geochemistry, Elsevier, 76, pp. 39-47
    Details
    Publication Date: 2018-04-11
    Repository Name: EPIC Alfred Wegener Institut
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  • 52
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    Compositional discrimination of decompression and decomposition gas bubbles in bycaught seals and dolphins (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. The definitive version was published in PLoS One 8 (2013): e83994, doi:10.1371/journal.pone.0083994.
    Description: Gas bubbles in marine mammals entangled and drowned in gillnets have been previously described by computed tomography, gross examination and histopathology. The absence of bacteria or autolytic changes in the tissues of those animals suggested that the gas was produced peri- or post-mortem by a fast decompression, probably by quickly hauling animals entangled in the net at depth to the surface. Gas composition analysis and gas scoring are two new diagnostic tools available to distinguish gas embolisms from putrefaction gases. With this goal, these methods have been successfully applied to pathological studies of marine mammals. In this study, we characterized the flux and composition of the gas bubbles from bycaught marine mammals in anchored sink gillnets and bottom otter trawls. We compared these data with marine mammals stranded on Cape Cod, MA, USA. Fresh animals or with moderate decomposition (decomposition scores of 2 and 3) were prioritized. Results showed that bycaught animals presented with significantly higher gas scores than stranded animals. Gas composition analyses indicate that gas was formed by decompression, confirming the decompression hypothesis.
    Description: This study was funded by the Woods Hole Oceanographic Institution Marine Mammal Center, and Wick and Sloan Simmons.
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  • 53
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    Properties of Red Sea coastal currents (2014)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Continental Shelf Research 78 (2014): 51–61, doi:10.1016/j.csr.2014.01.025.
    Description: Properties of coastal flows of the central Red Sea are examined using 2 years of velocity data acquired off the coast of Saudi Arabia near 22 °N. The tidal flow is found to be very weak. The strongest tidal constituent, the M2 tide, has a magnitude of order 4 cm s−1. Energetic near-inertial and diurnal period motions are observed. These are surface-intensified currents, reaching magnitudes of 〉10 cm s−1. Although the diurnal currents appear to be principally wind-driven, their relationship with the surface wind stress record is complex. Less than 50% of the diurnal current variance is related to the diurnal wind stress through linear correlation. Correlation analysis reveals a classical upwelling/downwelling response to the alongshore wind stress. However, less than 30% of the overall sub-inertial variance can be accounted for by this response. The action of basin-scale eddies, impinging on the coastal zone, is implicated as a primary mechanism for driving coastal flows.
    Description: This research is based on work supported by Award nos.USA 00002 and KSA 00011 made by KAUST to WHOI.
    Keywords: Red Sea ; Coastal flows ; Basin-shelf interaction
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  • 54
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    Decadal changes in zooplankton of the Northeast U.S. continental shelf (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This article is distributed under the Creative Commons CC0 public domain dedication. The definitive version was published in PLoS One 9 (2014): e87720, doi:10.1371/journal.pone.0087720.
    Description: The abundance of the subarctic copepod, Calanus finmarchicus, and temperate, shelf copepod, Centropages typicus, was estimated from samples collected bi-monthly over the Northeast U.S. continental shelf (NEUS) from 1977–2010. Latitudinal variation in long term trends and seasonal patterns for the two copepod species were examined for four sub-regions: the Gulf of Maine (GOM), Georges Bank (GB), Southern New England (SNE), and Mid-Atlantic Bight (MAB). Results suggested that there was significant difference in long term variation between northern region (GOM and GB), and the MAB for both species. C. finmarchicus generally peaked in May – June throughout the entire study region and Cen. typicus had a more complex seasonal pattern. Time series analysis revealed that the peak time for Cen. typicus switched from November – December to January - March after 1985 in the MAB. The long term abundance of C. finmarchicus showed more fluctuation in the MAB than the GOM and GB, whereas the long term abundance of Cen. typicus was more variable in the GB than other sub-regions. Alongshore transport was significantly correlated with the abundance of C. finmarchicus, i.e., more water from north, higher abundance for C. finmarchicus. The abundance of Cen. typicus showed positive relationship with the Gulf Stream north wall index (GSNWI) in the GOM and GB, but the GSNWI only explained 12–15% of variation in Cen. typicus abundance. In general, the alongshore current was negatively correlated with the GSNWI, suggesting that Cen. typicus is more abundant when advection from the north is less. However, the relationship between Cen. typicus and alongshore transport was not significant. The present study highlights the importance of spatial scales in the study of marine populations: observed long term changes in the northern region were different from the south for both species.
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  • 55
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    Decreased influence of Antarctic intermediate water in the tropical Atlantic during North Atlantic cold events (2014)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Earth and Planetary Science Letters 389 (2014): 200-208, doi:10.1016/j.epsl.2013.12.037.
    Description: Antarctic Intermediate Water (AAIW) is a key player in the global ocean circulation, contributing to the upper limb of the Atlantic Meridional Overturning Circulation (AMOC), and influencing interhemispheric heat exchange and the distribution of salinity, nutrients and carbon. However, the deglacial history of AAIW flow into the North Atlantic is controversial. Here we present a multicore-top neodymium isotope calibration, which confirms the ability of unclean foraminifera to faithfully record bottom water neodymium isotopic composition (εNdεNd) values in their authigenic coatings. We then present the first foraminifera-based reconstruction of εNdεNd from three sediment cores retrieved from within modern AAIW, in the western tropical North Atlantic. Our records reveal similar glacial and interglacial contributions of AAIW, and a pronounced decrease in the AAIW fraction during North Atlantic deglacial cold episodes, Heinrich Stadial 1 (HS1) and Younger Dryas (YD). Our results suggest two separate phases of reduced fraction of AAIW in the tropical Atlantic during HS1, with a greater reduction during early HS1. If a reduction in AAIW fraction also reflects reduced AMOC strength, this finding may explain why, in many regions, there are two phases of hydrologic change within HS1, and why atmospheric CO2 rose more rapidly during early than late HS1. Our result suggesting less flow of AAIW into the Atlantic during North Atlantic cold events contrasts with evidence from the Pacific, where intermediate-depth εNdεNd records may indicate increased flow of AAIW into the Pacific during the these same events. Antiphased εNdεNd behavior between intermediate depths of the North Atlantic and Pacific implies that the flow of AAIW into Atlantic and Pacific seesawed during the last deglaciation.
    Description: This work was supported by US NSF grants and a Lawrence J. Pratt and Melinda M. Hall Endowed Fund for Interdisciplinary Research Award to D.W.O. and W.B.C. and by a Taiwan NSC Postdoctoral Fellowship (NSC98-2917-I-564-132) to K.F.H.
    Keywords: Nd isotopes ; Antarctic intermediate water ; Atlantic meridional overturning circulation ; Deglacial variability ; North Atlantic cold events
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    Alkenone distribution in Lake Van sediment over the last 270 ka : influence of temperature and haptophyte species composition (2014)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Quaternary Science Reviews 104 (2014): 53-62, doi:10.1016/j.quascirev.2014.07.009.
    Description: Fossil long-chain alkenones have been used for several decades to reconstruct past ocean surface water temperatures and gained recent interest as a paleotemperature proxy for continental lake settings. However, factors besides temperature can affect alkenone distributions in haptophyte algae, and alkenone compositions can differ between haptophyte species. Alkenone-biosynthesizing haptophyte algae are genetically much more diverse in lakes than in the marine realm, and species-level variations in alkenone compositions could have implications for alkenone paleothermometry. Here, we performed a paired analysis of alkenone distributions and haptophyte species compositions using ancient DNA in up to 270 ka-old sediments of Lake Van in Turkey to reveal a possible species-effect on fossil alkenone distributions and paleotemperature estimates. The same predominant haptophyte in Lake Van today prevailed also since the last ∼100 ka. However, a calibration of alkenone paleotemperature especially in the oldest analyzed intervals is complicated due to a more complex haptophyte species composition predominated by a haptophyte (LVHap_6), which is phylogenetically different from sequences recovered from currently existing lakes including Lake Van and from haptophyte species existing in culture. The predominance of LVHap_6 coincided with the presence of alkenone MeC38:3 and relatively high MeC37:3/4 (2.4) and MeC38:4/5 ratios (3.0). Uk37 index values in the sediment core over the last 270 ka reflect relative changes in past temperature and are additionally linked to haptophyte species composition. A sustained period of high salinity, as indicated by pore-water salinity measurements, could potentially have triggered the succession of haptophytes as sources of alkenones in Lake Van.
    Description: The PALEOVAN drilling campaign was financially supported by the International Continental Scientific Drilling Program (ICDP), the Deutsche Forschungsgemeinschaft (DFG), the Swiss National Science Foundation (SNF grants 200020_143340, 20FI21_124972 and 200021_124981) and the Scientific and Technological Research Council of Turkey (Tübitak).
    Keywords: Alkenone paleothermometry ; Haptophyte species ; Paleoproxy ; Biomarker ; Paleolimnology ; Lake Van
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  • 57
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    Deglacial δ18O and hydrologic variability in the tropical Pacific and Indian Oceans (2014)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Earth and Planetary Science Letters 387 (2014): 240–251, doi:10.1016/j.epsl.2013.11.032.
    Description: Evidence from geologic archives suggests that there were large changes in the tropical hydrologic cycle associated with the two prominent northern hemisphere deglacial cooling events, Heinrich Stadial 1 (HS1; ∼19 to 15 kyr BP; kyr BP = 1000 yr before present) and the Younger Dryas (∼12.9 to 11.7 kyr BP). These hydrologic shifts have been alternatively attributed to high and low latitude origin. Here, we present a new record of hydrologic variability based on planktic foraminifera-derived δ18O of seawater (δ18Osw) estimates from a sediment core from the tropical Eastern Indian Ocean, and using 12 additional δ18Osw records, construct a single record of the dominant mode of tropical Eastern Equatorial Pacific and Indo-Pacific Warm Pool (IPWP) hydrologic variability. We show that deglacial hydrologic shifts parallel variations in the reconstructed interhemispheric temperature gradient, suggesting a strong response to variations in the Atlantic Meridional Overturning Circulation and the attendant heat redistribution. A transient model simulation of the last deglaciation suggests that hydrologic changes, including a southward shift in the Intertropical Convergence Zone (ITCZ) which likely occurred during these northern hemisphere cold events, coupled with oceanic advection and mixing, resulted in increased salinity in the Indonesian region of the IPWP and the eastern tropical Pacific, which is recorded by the δ18Osw proxy. Based on our observations and modeling results we suggest the interhemispheric temperature gradient directly controls the tropical hydrologic cycle on these time scales, which in turn mediates poleward atmospheric heat transport.
    Description: ThisworkwasfundedbytheNationalScienceFoundation;theOceanandClimateChangeInstituteandtheAcademicProgramsOfficeatWoodsHoleOceano-graphicInstitution;BMBF(PABESIA);andDFG(He3412/15-1)
    Keywords: Indo-Pacific ; Eastern Equatorial Pacific ; δ18O of seawater ; Deglaciation ; Heat transport
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  • 58
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    A quantitative assessment of the role of the parasite Amoebophrya in the termination of Alexandrium fundyense blooms within a small coastal embayment (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 8 (2013): e81150, doi:10.1371/journal.pone.0081150.
    Description: Parasitic dinoflagellates of the genus Amoebophrya infect free-living dinoflagellates, some of which can cause harmful algal blooms (HABs). High prevalence of Amoebophrya spp. has been linked to the decline of some HABs in marine systems. The objective of this study was to evaluate the impact of Amoebophrya spp. on the dynamics of dinoflagellate blooms in Salt Pond (MA, USA), particularly the harmful species Alexandrium fundyense. The abundance of Amoebophrya life stages was estimated 3–7 days per week through the full duration of an annual A. fundyense bloom using fluorescence in situ hybridization coupled with tyramide signal amplification (FISH- TSA). More than 20 potential hosts were recorded including Dinophysis spp., Protoperidinium spp. and Gonyaulax spp., but the only dinoflagellate cells infected by Amoebophrya spp. during the sampling period were A. fundyense. Maximum A. fundyense concentration co-occurred with an increase of infected hosts, followed by a massive release of Amoebophrya dinospores in the water column. On average, Amoebophrya spp. infected and killed ~30% of the A. fundyense population per day in the end phase of the bloom. The decline of the host A. fundyense population coincided with a dramatic life-cycle transition from vegetative division to sexual fusion. This transition occurred after maximum infected host concentrations and before peak infection percentages were observed, suggesting that most A. fundyense escaped parasite infection through sexual fusion. The results of this work highlight the importance of high frequency sampling of both parasite and host populations to accurately assess the impact of parasites on natural plankton assemblages.
    Description: L. Velo-Sua´rez was supported by a Marie Curie International Outgoing Fellowship (IOF; grant agreement: MOHAB PIOF-GA-252260). This work was supported in part by NSF grants OCE-0430724 and OCE-0911031 and National Institute of Environmental Health Sciences grants 1P50-ES01274201 and 1P01ES021923-01 to D.M. Anderson and D.J. McGillicuddy through the Woods Hole Center for Oceans and Human Health, National Park Service Cooperative Agreement H238015504 to D.M. Anderson.
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    Diving behavior of the reef manta ray links coral reefs with adjacent deep pelagic habitats (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e88170, doi:10.1371/journal.pone.0088170.
    Description: Recent successful efforts to increase protection for manta rays has highlighted the lack of basic ecological information, including vertical and horizontal movement patterns, available for these species. We deployed pop-up satellite archival transmitting tags on nine reef manta rays, Manta alfredi, to determine diving behaviors and vertical habitat use. Transmitted and archived data were obtained from seven tagged mantas over deployment periods of 102–188 days, including three recovered tags containing 2.6 million depth, temperature, and light level data points collected every 10 or 15 seconds. Mantas frequented the upper 10 m during daylight hours and tended to occupy deeper water throughout the night. Six of the seven individuals performed a cumulative 76 deep dives (〉150 m) with one individual reaching 432 m, extending the known depth range of this coastal, reef-oriented species and confirming its role as an ecological link between epipelagic and mesopelagic habitats. Mean vertical velocities calculated from high-resolution dive data (62 dives 〉150 m) from three individuals suggested that mantas may use gliding behavior during travel and that this behavior may prove more efficient than continuous horizontal swimming. The behaviors in this study indicate manta rays provide a previously unknown link between the epi- and mesopelagic layers of an extremely oligotrophic marine environment and provide evidence of a third marine species that utilizes gliding to maximize movement efficiency.
    Description: inancial support was provided in part by KAUST baseline research funds (to MLB), KAUST award numbers USA00002 and KSA 00011 (to SRT), and the U.S. National Science Foundation (OCE 0825148 to SRT and GBS).
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    Identification of cinnabarinic acid as novel endogenous aryl hydrocarbon receptor ligand that drives IL-22 production (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e87877, doi:10.1371/journal.pone.0087877.
    Description: The aryl hydrocarbon receptor (AHR) binds to environmental toxicants including synthetic halogenated aromatic hydrocarbons and is involved in a diverse array of biological processes. Recently, the AHR was shown to control host immunity by affecting the balance between inflammatory T cells that produce IL-17 (Th17) and IL-22 versus regulatory T cells (Treg) involved in tolerance. While environmental AHR ligands can mediate this effect, endogenous ligands are likely to be more relevant in host immune responses. We investigated downstream metabolites of tryptophan as potential AHR ligands because (1) tryptophan metabolites have been implicated in regulating the balance between Th17 and Treg cells and (2) many of the AHR ligands identified thus far are derivatives of tryptophan. We characterized the ability of tryptophan metabolites to bind and activate the AHR and to increase IL-22 production in human T cells. We report that the tryptophan metabolite, cinnabarinic acid (CA), is an AHR ligand that stimulates the differentiation of human and mouse T cells producing IL-22. We compare the IL-22-stimulating activity of CA to that of other tryptophan metabolites and define stimulation conditions that lead to CA production from immune cells. Our findings link tryptophan metabolism to AHR activation and define a novel endogenous AHR agonist with potentially broad biological functions.
    Description: This work was supported in part by National Institutes of Health (NIH) grants OD000329 and R01AI40312 (to JMM), R01ES006272 (to MEH), P42ES007381 (Superfund Research Program at Boston University to JS, DHS and MEH), R21CA134882 (to JS), NIH Training Grant T32 GM007175 (MML), and the Harvey V. Berneking Living Trust. BK is supported by Career Development Awards from the NIH/National Institute of Diabetes and Digestive and Kidney Diseases (DK083334) and the NASPGHAN Foundation. JEM is a recipient of the Human Frontiers Science Program Long-Term Fellowship (LT000231/2011-L). JMM is a recipient of the NIH Director's Pioneer Award Program, part of the NIH Roadmap for Medical Research, through grant DPI OD00329.
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    Shifts in the microbial community composition of Gulf Coast beaches following beach oiling (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 8 (2013): e74265, doi:10.1371/journal.pone.0074265.
    Description: Microorganisms associated with coastal sands serve as a natural biofilter, providing essential nutrient recycling in nearshore environments and acting to maintain coastal ecosystem health. Anthropogenic stressors often impact these ecosystems, but little is known about whether these disturbances can be identified through microbial community change. The blowout of the Macondo Prospect reservoir on April 20, 2010, which released oil hydrocarbons into the Gulf of Mexico, presented an opportunity to examine whether microbial community composition might provide a sensitive measure of ecosystem disturbance. Samples were collected on four occasions, beginning in mid-June, during initial beach oiling, until mid-November from surface sand and surf zone waters at seven beaches stretching from Bay St. Louis, MS to St. George Island, FL USA. Oil hydrocarbon measurements and NOAA shoreline assessments indicated little to no impact on the two most eastern beaches (controls). Sequence comparisons of bacterial ribosomal RNA gene hypervariable regions isolated from beach sands located to the east and west of Mobile Bay in Alabama demonstrated that regional drivers account for markedly different bacterial communities. Individual beaches had unique community signatures that persisted over time and exhibited spatial relationships, where community similarity decreased as horizontal distance between samples increased from one to hundreds of meters. In contrast, sequence analyses detected larger temporal and less spatial variation among the water samples. Superimposed upon these beach community distance and time relationships, was increased variability in bacterial community composition from oil hydrocarbon contaminated sands. The increased variability was observed among the core, resident, and transient community members, indicating the occurrence of community-wide impacts rather than solely an overprinting of oil hydrocarbon-degrading bacteria onto otherwise relatively stable sand population structures. Among sequences classified to genus, Alcanivorax, Alteromonas, Marinobacter, Winogradskyella, and Zeaxanthinibacter exhibited the largest relative abundance increases in oiled sands.
    Description: Financial support for this work was provided by the University of Wisconsin-Milwaukee National Institute of Environmental Health Sciences program, grant ES-004184 to SLM and the Alfred P. Sloan Foundation's grant for the Rare Biosphere in the Built Environment MLS.
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    Vertebral bomb radiocarbon suggests extreme longevity in white sharks (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This article is distributed free of all copyright. The definitive version was published in PLoS One 9 (2014): e84006, doi:10.1371/journal.pone.0084006.
    Description: Conservation and management efforts for white sharks (Carcharodon carcharias) remain hampered by a lack of basic demographic information including age and growth rates. Sharks are typically aged by counting growth bands sequentially deposited in their vertebrae, but the assumption of annual deposition of these band pairs requires testing. We compared radiocarbon (Δ14C) values in vertebrae from four female and four male white sharks from the northwestern Atlantic Ocean (NWA) with reference chronologies documenting the marine uptake of 14C produced by atmospheric testing of thermonuclear devices to generate the first radiocarbon age estimates for adult white sharks. Age estimates were up to 40 years old for the largest female (fork length [FL]: 526 cm) and 73 years old for the largest male (FL: 493 cm). Our results dramatically extend the maximum age and longevity of white sharks compared to earlier studies, hint at possible sexual dimorphism in growth rates, and raise concerns that white shark populations are considerably more sensitive to human-induced mortality than previously thought.
    Description: This study was funded by the National Science Foundation (OCE 0825148 was awarded to SRT) and LLH was supported by the National Science Foundation Graduate Research Fellowship Program.
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    Strong depth-related zonation of megabenthos on a rocky continental margin (∼700–4000 m) off southern Tasmania, Australia (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e85872, doi:10.1371/journal.pone.0085872.
    Description: Assemblages of megabenthos are structured in seven depth-related zones between ~700 and 4000 m on the rocky and topographically complex continental margin south of Tasmania, southeastern Australia. These patterns emerge from analysis of imagery and specimen collections taken from a suite of surveys using photographic and in situ sampling by epibenthic sleds, towed video cameras, an autonomous underwater vehicle and a remotely operated vehicle (ROV). Seamount peaks in shallow zones had relatively low biomass and low diversity assemblages, which may be in part natural and in part due to effects of bottom trawl fishing. Species richness was highest at intermediate depths (1000–1300 m) as a result of an extensive coral reef community based on the bioherm-forming scleractinian Solenosmilia variabilis. However, megabenthos abundance peaked in a deeper, low diversity assemblage at 2000–2500 m. The S. variabilis reef and the deep biomass zone were separated by an extensive dead, sub-fossil S. variabilis reef and a relatively low biomass stratum on volcanic rock roughly coincident with the oxygen minimum layer. Below 2400 m, megabenthos was increasingly sparse, though punctuated by occasional small pockets of relatively high diversity and biomass. Nonetheless, megabenthic organisms were observed in the vast majority of photographs on all seabed habitats and to the maximum depths observed - a sandy plain below 3950 m. Taxonomic studies in progress suggest that the observed depth zonation is based in part on changing species mixes with depth, but also an underlying commonality to much of the seamount and rocky substrate biota across all depths. Although the mechanisms supporting the extraordinarily high biomass in 2000–2500 m depths remains obscure, plausible explanations include equatorwards lateral transport of polar production and/or a response to depth-stratified oxygen availability.
    Description: Components of this work were supported by the National Science Foundation, the Australian Department of Environment, Water, Heritage, and the Arts, the Australian Commonwealth Environmental Research Fund, a grant of ship time by the Australian National Research Facility, and the CSIRO Wealth from Oceans and Climate Adaptation Flagships.
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    Transcriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in Acanthocephala via an epizoic stage (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e88618, doi:10.1371/journal.pone.0088618.
    Description: The taxon Syndermata comprises the biologically interesting wheel animals (“Rotifera”: Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparasitism. Here, we report the first phylogenomic analysis that includes all four higher-ranked groups of Syndermata. The analyzed data sets comprise new transcriptome data for Seison spec. (Seisonidea), Brachionus manjavacas (Monogononta), Adineta vaga (Bdelloidea), and Paratenuisentis ambiguus (Acanthocephala). Maximum likelihood and Bayesian trees for a total of 19 metazoan species were reconstructed from up to 410 functionally diverse proteins. The results unanimously place Monogononta basally within Syndermata, and Bdelloidea appear as the sister group to a clade comprising epizoic Seisonidea and endoparasitic Acanthocephala. Our results support monophyly of Syndermata, Hemirotifera (Bdelloidea + Seisonidea + Acanthocephala), and Pararotatoria (Seisonidea + Acanthocephala), rejecting monophyly of traditional Rotifera and Eurotatoria. This serves as an indication that early acanthocephalans lived epizoically or as ectoparasites on arthropods, before their complex lifecycle with arthropod intermediate and vertebrate definite hosts evolved.
    Description: The work was funded by the Deutsche Forschungsgemeinschaft (DFG grant Ha2103/4-3, Priority Project "Deep Metazoan Phylogeny", SPP1174; www. dfg.de). Additional financial support came from the Center for Computational Sciences (SRFN) of Johannes Gutenberg University Mainz (http://www.csm.unimainz. de).
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    Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e97338, doi:10.1371/journal.pone.0097338.
    Description: Metagenomics-based functional profiling analysis is an effective means of gaining deeper insight into the composition of marine microbial populations and developing a better understanding of the interplay between the functional genome content of microbial communities and abiotic factors. Here we present a comprehensive analysis of 24 datasets covering surface and depth-related environments at 11 sites around the world's oceans. The complete datasets comprises approximately 12 million sequences, totaling 5,358 Mb. Based on profiling patterns of Clusters of Orthologous Groups (COGs) of proteins, a core set of reference photic and aphotic depth-related COGs, and a collection of COGs that are associated with extreme oxygen limitation were defined. Their inferred functions were utilized as indicators to characterize the distribution of light- and oxygen-related biological activities in marine environments. The results reveal that, while light level in the water column is a major determinant of phenotypic adaptation in marine microorganisms, oxygen concentration in the aphotic zone has a significant impact only in extremely hypoxic waters. Phylogenetic profiling of the reference photic/aphotic gene sets revealed a greater variety of source organisms in the aphotic zone, although the majority of individual photic and aphotic depth-related COGs are assigned to the same taxa across the different sites. This increase in phylogenetic and functional diversity of the core aphotic related COGs most probably reflects selection for the utilization of a broad range of alternate energy sources in the absence of light.
    Description: This work was supported by King Abdullah University for Science and Technology Global Collaborative Partners (GCR) program.
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    Capture of lipopolysaccharide (endotoxin) by the blood clot : a comparative study (2014)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 8 (2013): e80192, doi:10.1371/journal.pone.0080192.
    Description: In vertebrates and arthropods, blood clotting involves the establishment of a plug of aggregated thrombocytes (the cellular clot) and an extracellular fibrillar clot formed by the polymerization of the structural protein of the clot, which is fibrin in mammals, plasma lipoprotein in crustaceans, and coagulin in the horseshoe crab, Limulus polyphemus. Both elements of the clot function to staunch bleeding. Additionally, the extracellular clot functions as an agent of the innate immune system by providing a passive anti-microbial barrier and microbial entrapment device, which functions directly at the site of wounds to the integument. Here we show that, in addition to these passive functions in immunity, the plasma lipoprotein clot of lobster, the coagulin clot of Limulus, and both the platelet thrombus and the fibrin clot of mammals (human, mouse) operate to capture lipopolysaccharide (LPS, endotoxin). The lipid A core of LPS is the principal agent of gram-negative septicemia, which is responsible for more than 100,000 human deaths annually in the United States and is similarly toxic to arthropods. Quantification using the Limulus Amebocyte Lysate (LAL) test shows that clots capture significant quantities of LPS and fluorescent-labeled LPS can be seen by microscopy to decorate the clot fibrils. Thrombi generated in the living mouse accumulate LPS in vivo. It is suggested that capture of LPS released from gram-negative bacteria entrapped by the blood clot operates to protect against the disease that might be caused by its systemic dispersal.
    Description: Grant # 0344360 from the National Science Foundation (PBA).
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    Geologic framework of the northern North Carolina, USA inner continental shelf and its influence on coastal evolution (2014)
    Elsevier
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Geology 348 (2014): 113-130, doi:10.1016/j.margeo.2013.11.011.
    Description: The inner continental shelf off the northern Outer Banks of North Carolina was mapped using sidescan sonar, interferometric swath bathymetry, and high-resolution chirp and boomer subbottom profiling systems. We use this information to describe the shallow stratigraphy, reinterpret formation mechanisms of some shoal features, evaluate local relative sea-levels during the Late Pleistocene, and provide new constraints, via recent bedform evolution, on regional sediment transport patterns. The study area is approximately 290 km long by 11 km wide, extending from False Cape, Virginia to Cape Lookout, North Carolina, in water depths ranging from 6 to 34 m. Late Pleistocene sedimentary units comprise the shallow geologic framework of this region and determine both the morphology of the inner shelf and the distribution of sediment sources and sinks. We identify Pleistocene sedimentary units beneath Diamond Shoals that may have provided a geologic template for the location of modern Cape Hatteras and earlier paleo-capes during the Late Pleistocene. These units indicate shallow marine deposition 15–25 m below present sea-level. The uppermost Pleistocene unit may have been deposited as recently as Marine Isotope Stage 3, although some apparent ages for this timing may be suspect. Paleofluvial valleys incised during the Last Glacial Maximum traverse the inner shelf throughout the study area and dissect the Late Pleistocene units. Sediments deposited in the valleys record the Holocene transgression and provide insight into the evolutionary history of the barrier-estuary system in this region. The relationship between these valleys and adjacent shoal complexes suggests that the paleo-Roanoke River did not form the Albemarle Shelf Valley complex as previously proposed; a major fluvial system is absent and thus makes the formation of this feature enigmatic. Major shoal features in the study area show mobility at decadal to centennial timescales, including nearly a kilometer of shoal migration over the past 134 yr. Sorted bedforms occupy ~ 1000 km2 of seafloor in Raleigh Bay, and indicate regional sediment transport patterns between Capes Hatteras and Lookout that help explain long-term sediment accumulation and morphologic development. Portions of the inner continental shelf with relatively high sediment abundance are characterized by shoals and shoreface-attached ridges, and where sediment is less abundant, the seafloor is dominated by sorted bedforms. These relationships are also observed in other passive margin settings, suggesting a continuum of shelf morphology that may have broad application for interpreting inner shelf sedimentation patterns.
    Description: Funding for this research was provided by the USGS Coastal and Marine Geology Program.
    Keywords: Cape-associated shoals ; Inner shelf sedimentation ; Sea-level change ; Seismic reflection ; Sidescan sonar ; Sorted bedforms
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    Batiacasphaera bergenensis and Lavradosphaera elongata — New dinoflagellate cyst and acritarch species from the Miocene of the Iceland Sea (ODP Hole 907A) (2014)
    Elsevier
    In:  EPIC3Review of Palaeobotany and Palynology, Elsevier, 211, pp. 97-106, ISSN: 0034-6667
    Details
    Publication Date: 2014-11-25
    Description: A detailed palynological investigation of the almost continuous middle through upper Miocene sediment sequence of ODP Hole 907A in the Iceland Sea revealed the presence of a new species of the dinoflagellate cyst genus Batiacasphaera, and a new species of the acritarch genus Lavradosphaera. Batiacasphaera bergenensis sp. nov. and Lavradosphaera elongata sp. nov. are both morphologically distinctive and have well-defined stratigraphic range tops that are independently constrained by the pristine paleomagnetic record of Hole 907A. Both species disappeared within a narrow interval across the middle to late Miocene boundary, when small-scale glaciations on Greenland were large enough to reach sea level. The distinct morphology of the proposed species and their highest occurrence in this critical interval highlights their potential for future biostratigraphic application in the Miocene of the high northern latitudes, an area important for understanding the Late Cenozoic transition into a bipolar glaciated world.
    Repository Name: EPIC Alfred Wegener Institut
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    Comparison of bacterial communities in sands and water at beaches with bacterial water quality violations (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e90815, doi:10.1371/journal.pone.0090815.
    Description: Recreational water quality, as measured by culturable fecal indicator bacteria (FIB), may be influenced by persistent populations of these bacteria in local sands or wrack, in addition to varied fecal inputs from human and/or animal sources. In this study, pyrosequencing was used to generate short sequence tags of the 16S hypervariable region ribosomal DNA from shallow water samples and from sand samples collected at the high tide line and at the intertidal water line at sites with and without FIB exceedance events. These data were used to examine the sand and water bacterial communities to assess the similarity between samples, and to determine the impact of water quality exceedance events on the community composition. Sequences belonging to a group of bacteria previously identified as alternative fecal indicators were also analyzed in relationship to water quality violation events. We found that sand and water samples hosted distinctly different overall bacterial communities, and there was greater similarity in the community composition between coastal water samples from two distant sites. The dissimilarity between high tide and intertidal sand bacterial communities, although more similar to each other than to water, corresponded to greater tidal range between the samples. Within the group of alternative fecal indicators greater similarity was observed within sand and water from the same site, likely reflecting the anthropogenic contribution at each beach. This study supports the growing evidence that community-based molecular tools can be leveraged to identify the sources and potential impact of fecal pollution in the environment, and furthermore suggests that a more diverse bacterial community in beach sand and water may reflect a less contaminated site and better water quality.
    Description: This work was supported by the National Science Foundation grant OCE-0430724, and the National Institute of Environmental Health Sciences grant P0ES012742 to the Woods Hole Center for Ocean and Human Health. E. Halliday was partially supported by WHOI Academic Programs and grants from the WHOI Ocean Ventures Fund and the WHOI Coastal Ocean Institute.
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    Distinguishing seawater from geologic brine in saline coastal groundwater using radium-226; an example from the Sabkha of the UAE (2014)
    Elsevier
    Details
    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Chemical Geology 371 (2014): 1-8, doi:10.1016/j.chemgeo.2014.01.018.
    Description: Sabkhat (Salt flats) are common geographic features of low-lying marine coastal areas that develop under hyper-arid climatic conditions. They are characterized by the presence of highly concentrated saline solutions and evaporitic minerals, and have been cited in the geologic literature as present-day representations of hyper-arid regional paleohydrogeology, paleoclimatology, coastal processes, and sedimentation in the geologic record. It is therefore important that a correct understanding of the origin and development of these features be achieved. Knowledge of the source of solutes is an important first step in understanding these features. Historically, two theories have been advanced as to the main source of solutes in sabkha brines: an early concept entailing seawater as the obvious source, and a more recent and dynamic theory involving ascending geologic brine forced upward into the base of the sabkha by a regional hydraulic gradient in the underlying formations. Ra-226 could uniquely distinguish between these sources under certain circumstances, as it is typically present at elevated activity of hundreds to thousands of Bq/m3 (Becquerels per cubic meter) in subsurface formation brines; at exceedingly low activities in open ocean and coastal water; and not significantly supplied to water from recently formed marine sedimentary framework material. The coastal marine sabkha of the Emirate of Abu Dhabi was used to test this hypothesis. The distribution of Ra-226 in 70 samples of sabkha brine (mean: 700 Bq/m3), 7 samples of underlying deeper formation brine (mean: 3416 Bq/m3), the estimated value of seawater (〈 16 Bq/m3) and an estimate of supply from sabkha sedimentary framework grains (〈~6 Bq/m3) provide the first direct evidence that ascending geologic brine contributes significantly to the solutes of this sabkha system.
    Keywords: Sabkhat ; Radium-226 ; Geologic brine ; Seawater
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    Multiple sulfur isotope constraints on the modern sulfur cycle (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Earth and Planetary Science Letters 396 (2014): 14-21, doi:10.1016/j.epsl.2014.03.057.
    Description: We present 28 multiple sulfur isotope measurements of seawater sulfate (δ34SSO4δ34SSO4 and Δ33SSO4Δ33SSO4) from the modern ocean over a range of water depths and sites along the eastern margin of the Pacific Ocean. The average measured δ34SSO4δ34SSO4 is 21.24‰ (±0.88‰,2σ±0.88‰,2σ) with a calculated Δ33SSO4Δ33SSO4 of +0.050‰+0.050‰ (±0.014‰,2σ±0.014‰,2σ). With these values, we use a box-model to place constraints on the gross fraction of pyrite burial in modern sediments. This model presents an improvement on previous estimates of the global pyrite burial flux because it does not rely on the assumed value of δ34Spyriteδ34Spyrite, which is poorly constrained, but instead uses new information about the relationship between δ34Sδ34S and δ33Sδ33S in global marine sulfate. Our calculations indicate that the pyrite burial flux from the modern ocean is between 10% and 45% of the total sulfur lost from the oceans, with a more probable range between 20% and 35%.
    Description: RT acknowledges financial support from NERC Grant NE/I00596X/1. Support was provided through NERC grant NE/H011595/1 to AVT. AVT acknowledges financial support from the ERC Starting Investigator Grant 307582. JF acknowledges support from the NASA Astrobiology Institute.
    Keywords: Sulfur isotopes ; Multiple sulfur isotopes ; Pyrite flux ; Sulfur cycle ; Sulfate reduction ; Biogeochemical cycles
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    Assessment of tsunami hazard to the U.S. Atlantic margin (2014)
    Elsevier
    Details
    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine Geology 353 (2014): 31-54, doi:10.1016/j.margeo.2014.02.011.
    Description: Tsunami hazard is a very low-probability, but potentially high-risk natural hazard, posing unique challenges to scientists and policy makers trying to mitigate its impacts. These challenges are illustrated in this assessment of tsunami hazard to the U.S. Atlantic margin. Seismic activity along the U.S. Atlantic margin in general is low, and confirmed paleo-tsunami deposits have not yet been found, suggesting a very low rate of hazard. However, the devastating 1929 Grand Banks tsunami along the Atlantic margin of Canada shows that these events continue to occur. Densely populated areas, extensive industrial and port facilities, and the presence of ten nuclear power plants along the coast, make this region highly vulnerable to flooding by tsunamis and therefore even low-probability events need to be evaluated. We can presently draw several tentative conclusions regarding tsunami hazard to the U.S. Atlantic coast. Landslide tsunamis likely constitute the biggest tsunami hazard to the coast. Only a small number of landslides have so far been dated and they are generally older than 10,000 years. The geographical distribution of landslides along the margin is expected to be uneven and to depend on the distribution of seismic activity along the margin and on the geographical distribution of Pleistocene sediment. We do not see evidence that gas hydrate dissociation contributes to the generation of landslides along the U.S. Atlantic margin. Analysis of landslide statistics along the fluvial and glacial portions of the margin indicate that most of the landslides are translational, were probably initiated by seismic acceleration, and failed as aggregate slope failures. How tsunamis are generated from aggregate landslides remains however, unclear. Estimates of the recurrence interval of earthquakes along the continental slope may provide maximum estimates for the recurrence interval of landslide along the margin. Tsunamis caused by atmospheric disturbances and by coastal earthquakes may be more frequent than those generated by landslides, but their amplitudes are probably smaller. Among the possible far-field earthquake sources, only earthquakes located within the Gulf of Cadiz or west of the Tore-Madeira Rise are likely to affect the U.S. coast. It is questionable whether earthquakes on the Puerto Rico Trench are capable of producing a large enough tsunami that will affect the U.S. Atlantic coast. More information is needed to evaluate the seismic potential of the northern Cuba fold-and-thrust belt. The hazard from a volcano flank collapse in the Canary Islands is likely smaller than originally stated, and there is not enough information to evaluate the magnitude and frequency of flank collapse from the Azores Islands. Both deterministic and probabilistic methods to evaluate the tsunami hazard from the margin are available for application to the Atlantic margin, but their implementation requires more information than is currently available.
    Description: The work was funded by the U.S.-NRC Job Code V6166: Tsunami Landslide Source Probability and Potential Impact on New and Existing Power Plants.
    Keywords: Submarine landslides ; Meteo-tsunami ; Earthquakes and landslides ; Probabilistic hazard assessment
    Repository Name: Woods Hole Open Access Server
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    Distribution of surface plastic debris in the eastern Pacific Ocean from an 11-Year data set (2014)
    American Chemical Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Chemical Society, 2014. This article is posted here by permission of American Chemical Society for personal use, not for redistribution. The definitive version was published in Environmental Science and Technology 38 (2014): 4732–4738, doi:10.1021/es4053076.
    Description: We present an extensive survey of floating plastic debris in the eastern North and South Pacific Oceans from more than 2500 plankton net tows conducted between 2001 and 2012. From these data we defined an accumulation zone (25 to 41°N, 130 to 180°W) in the North Pacific subtropical gyre that closely corresponds to centers of accumulation resulting from the convergence of ocean surface currents predicted by several oceanographic numerical models. Maximum plastic concentrations from individual surface net tows exceeded 106 pieces km–2, with concentrations decreasing with increasing distance from the predicted center of accumulation. Outside the North Pacific subtropical gyre the median plastic concentration was 0 pieces km–2. We were unable to detect a robust temporal trend in the data set, perhaps because of confounded spatial and temporal variability. Large spatiotemporal variability in plastic concentration causes order of magnitude differences in summary statistics calculated over short time periods or in limited geographic areas. Utilizing all available plankton net data collected in the eastern Pacific Ocean (17.4°S to 61.0°N; 85.0 to 180.0°W) since 1999, we estimated a minimum of 21 290 t of floating microplastic.
    Description: This work was supported by Sea Education Association, NFWF-NOAA Marine Debris Program (Nos. 2009-0062-002, NA10OAR4320148, Amend. 71), and NSF (Nos. OCE-0087528, OCE-1155379, OCE-1260403, OCE-1352422).
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    Composition of hydrothermal fluids and mineralogy of associated chimney material on the East Scotia Ridge back-arc spreading centre (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Geochimica et Cosmochimica Acta 139 (2014): 47-71, doi:10.1016/j.gca.2014.04.024.
    Description: The East Scotia Ridge is an active back-arc spreading centre located to the west of the South Sandwich island arc in the Southern Ocean. Initial exploration of the ridge by deep-tow surveys provided the first evidence for hydrothermal activity in a back-arc setting outside of the western Pacific, and we returned in 2010 with a remotely operated vehicle to precisely locate and sample hydrothermal sites along ridge segments E2 and E9. Here we report the chemical and isotopic composition of high- and low-temperature vent fluids, and the mineralogy of associated high-temperature chimney material, for two sites at E2 (Dog’s Head and Sepia), and four sites at E9 (Black & White, Ivory Tower, Pagoda and Launch Pad). The chemistry of the fluids is highly variable between the ridge segments. Fluid temperatures were ∼350 °C at all vent sites except Black & White, which was significantly hotter (383 °C). End-member chloride concentrations in E2 fluids (532–536 mM) were close to background seawater (540 mM), whereas Cl in E9 fluids was much lower (98–220 mM) indicating that these fluids are affected by phase separation. Concentrations of the alkali elements (Na, Li, K and Cs) and the alkaline earth elements (Ca, Sr and Ba) co-vary with Cl, due to charge balance constraints. Similarly, concentrations of Mn and Zn are highest in the high Cl fluids but, by contrast, Fe/Cl ratios are higher in E9 fluids (3.8–8.1 × 10−3) than they are in E2 fluids (1.5–2.4 × 10−3) and fluids with lowest Cl have highest Cu. Although both ridge segments are magmatically inflated, there is no compelling evidence for input of magmatic gases to the vent fluids. Fluid δD values range from 0.2‰ to 1.5‰, pH values (3.02–3.42) are not especially low, and F concentrations (34.6–54.4 μM) are lower than bottom seawater (62.8 μM). The uppermost sections of conjugate chimney material from E2, and from Ivory Tower and Pagoda at E9, typically exhibit inner zones of massive chalcopyrite enclosed within an outer zone of disseminated sulphide, principally sphalerite and pyrite, in an anhydrite matrix. By contrast, the innermost part of the chimneys that currently vent fluids with lowest Cl (Black & White and Launch Pad), is dominated by anhydrite. By defining and assessing the controls on the chemical composition of these vent fluids, and associated mineralisation, this study provides new information for evaluating the significance of hydrothermal processes at back-arc basins for ocean chemistry and the formation of seafloor mineral deposits.
    Description: This work was funded by the Natural Environment Research Council consortium grant NE/D01249X/1. C.R.G. acknowledges further support from the National Science Foundation’s Office of Polar Programs grant ANT-0739675. N.R.B. acknowledges funding from the National Sciences and Engineering Research Council of Canada, Ontario Ministry of Research and Innovation, and the Academic Development Fund at Western University.
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    A fossil winonaite-like meteorite in Ordovician limestone : a piece of the impactor that broke up the L-chondrite parent body? (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Earth and Planetary Science Letters 400 (2014): 145-152, doi:10.1016/j.epsl.2014.05.034.
    Description: About a quarter of all meteorites falling on Earth today originate from the breakup of the L-chondrite parent body ∼470 Ma∼470 Ma ago, the largest documented breakup in the asteroid belt in the past ∼3 Ga∼3 Ga. A window into the flux of meteorites to Earth shortly after this event comes from the recovery of about 100 fossil L chondrites (1–21 cm in diameter) in a quarry of mid-Ordovician limestone in southern Sweden. Here we report on the first non-L-chondritic meteorite from the quarry, an 8 cm large winonaite-related meteorite of a type not known among present-day meteorite falls and finds. The noble gas data for relict spinels recovered from the meteorite show that it may be a remnant of the body that hit and broke up the L-chondrite parent body, creating one of the major asteroid families in the asteroid belt. After two decades of systematic recovery of fossil meteorites and relict extraterrestrial spinel grains from marine limestone, it appears that the meteorite flux to Earth in the mid-Ordovician was very different from that of today.
    Description: This study was supported by an European Research Council Advanced Grant to B.S., in part by NASA grant NNX08AE08G to K.K., and a grant to M.M. from the Swiss National Science Foundation.
    Keywords: Fossil meteorite ; Asteroid breakup ; Winonaite ; Ordinary chondrite ; Asteroid family ; Meteorite flux
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    Movement patterns of juvenile whale sharks tagged at an aggregation site in the Red Sea (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e103536, doi:10.1371/journal.pone.0103536.
    Description: Conservation efforts aimed at the whale shark, Rhincodon typus, remain limited by a lack of basic information on most aspects of its ecology, including global population structure, population sizes and movement patterns. Here we report on the movements of 47 Red Sea whale sharks fitted with three types of satellite transmitting tags from 2009–2011. Most of these sharks were tagged at a single aggregation site near Al-Lith, on the central coast of the Saudi Arabian Red Sea. Individuals encountered at this site were all juveniles based on size estimates ranging from 2.5–7 m total length with a sex ratio of approximately 1:1. All other known aggregation sites for juvenile whale sharks are dominated by males. Results from tagging efforts showed that most individuals remained in the southern Red Sea and that some sharks returned to the same location in subsequent years. Diving data were recorded by 37 tags, revealing frequent deep dives to at least 500 m and as deep as 1360 m. The unique temperature-depth profiles of the Red Sea confirmed that several whale sharks moved out of the Red Sea while tagged. The wide-ranging horizontal movements of these individuals highlight the need for multinational, cooperative efforts to conserve R. typus populations in the Red Sea and Indian Ocean.
    Description: Financial support was provided in part by KAUST baseline research funds (to MLB), KAUST award nos. USA00002 and KSA 00011 (to SRT), and the United States National Science Foundation (OCE 0825148 to SRT and GBS).
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    Anthropogenic nutrients and harmful algae in coastal waters (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Environmental Management 146 (2014): 206-216, doi:10.1016/j.jenvman.2014.07.002.
    Description: Harmful algal blooms (HABs) are thought to be increasing in coastal waters worldwide. Anthropogenic nutrient enrichment has been proposed as a principal causative factor of this increase through elevated inorganic and/or organic nutrient concentrations and modified nutrient ratios. We assess: 1) the level of understanding of the link between the amount, form and ratio of anthropogenic nutrients and HABs; 2) the evidence for a link between anthropogenically generated HABs and negative impacts on human health; and 3) the economic implications of anthropogenic nutrient/HAB interactions. We demonstrate that an anthropogenic nutrient-HAB link is far from universal, and where it has been demonstrated, it is most frequently associated with high biomass rather than low biomass (biotoxin producing) HABs. While organic nutrients have been shown to support the growth of a range of HAB species, insufficient evidence exists to clearly establish if these nutrients specifically promote the growth of harmful species in preference to benign ones, or if/how they influence toxicity of harmful species. We conclude that the role of anthropogenic nutrients in promoting HABs is site-specific, with hydrodynamic processes often determining whether blooms occur. We also find a lack of evidence of widespread significant adverse health impacts from anthropogenic nutrient-generated HABs, although this may be partly due to a lack of human/animal health and HAB monitoring. Detailed economic evaluation and cost/benefit analysis of the impact of anthropogenically generated HABs, or nutrient reduction schemes to alleviate them, is also frequently lacking.
    Description: The work described here is based in part on a project ‘Harmful Algae, Nuisance Blooms and Anthropogenic Nutrient Enrichment’ funded by the UK Department for Environment, Food and Rural Affairs (contract ME2208). In addition KD was supported by the FP7 project Asimuth and funding from the NERC Shelf Seas Biogeochemistry and PURE Associates programmes. PJH was supported by University Grants Council of Hong Kong AoE project (AoE/P-04/0401). PH and LEF were funded by the US National Science Foundation (NSF) Award 1009106; LEF was funded in part by the European Regional Development Fund and European Social Fund (University of Exeter, Truro, Cornwall, UK). GM was supported by a NERC PhD studentship.
    Keywords: Harmful algal blooms ; HABs ; Anthropogenic nutrients ; Human health ; Economic impact
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    Aggregation and Sedimentation of Thalassiosira weissflogii (diatom) in a Warmer and More Acidified Future Ocean (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e112379, doi:10.1575/1912/6845.
    Description: Increasing Transparent Exopolymer Particle (TEP) formation during diatom blooms as a result of elevated temperature and pCO2 have been suggested to result in enhanced aggregation and carbon flux, therewith potentially increasing the sequestration of carbon by the ocean. We present experimental results on TEP and aggregate formation by Thalassiosira weissflogii (diatom) in the presence or absence of bacteria under two temperature and three pCO2 scenarios. During the aggregation phase of the experiment TEP formation was elevated at the higher temperature (20°C vs. 15°C), as predicted. However, in contrast to expectations based on the established relationship between TEP and aggregation, aggregation rates and sinking velocity of aggregates were depressed in warmer treatments, especially under ocean acidification conditions. If our experimental findings can be extrapolated to natural conditions, they would imply a reduction in carbon flux and potentially reduced carbon sequestration after diatom blooms in the future ocean.
    Description: This work was supported by National Science Foundation grants OCE-0926711 & OCE-1041038 to UP and Helmholtz Graduate School for Polar and Marine Research and Jacobs University Bremen to SS.
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    Assessing performance of Bayesian state-space models fit to Argos satellite telemetry locations processed with Kalman filtering (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e92277, doi:10.1371/journal.pone.0092277.
    Description: Argos recently implemented a new algorithm to calculate locations of satellite-tracked animals that uses a Kalman filter (KF). The KF algorithm is reported to increase the number and accuracy of estimated positions over the traditional Least Squares (LS) algorithm, with potential advantages to the application of state-space methods to model animal movement data. We tested the performance of two Bayesian state-space models (SSMs) fitted to satellite tracking data processed with KF algorithm. Tracks from 7 harbour seals (Phoca vitulina) tagged with ARGOS satellite transmitters equipped with Fastloc GPS loggers were used to calculate the error of locations estimated from SSMs fitted to KF and LS data, by comparing those to “true” GPS locations. Data on 6 fin whales (Balaenoptera physalus) were used to investigate consistency in movement parameters, location and behavioural states estimated by switching state-space models (SSSM) fitted to data derived from KF and LS methods. The model fit to KF locations improved the accuracy of seal trips by 27% over the LS model. 82% of locations predicted from the KF model and 73% of locations from the LS model were 〈5 km from the corresponding interpolated GPS position. Uncertainty in KF model estimates (5.6±5.6 km) was nearly half that of LS estimates (11.6±8.4 km). Accuracy of KF and LS modelled locations was sensitive to precision but not to observation frequency or temporal resolution of raw Argos data. On average, 88% of whale locations estimated by KF models fell within the 95% probability ellipse of paired locations from LS models. Precision of KF locations for whales was generally higher. Whales’ behavioural mode inferred by KF models matched the classification from LS models in 94% of the cases. State-space models fit to KF data can improve spatial accuracy of location estimates over LS models and produce equally reliable behavioural estimates.
    Description: This research was primarily funded by Fundação para a Ciência e a Tecnologia (FCT), Fundo Regional da Ciência, Tecnologia (FRCT), through research projects TRACE-PTDC/MAR/74071/2006 and MAPCET-M2.1.2/F/012/2011 [FEDER], the Competitiveness Factors Operational (COMPETE), QREN European Social Fund, and Proconvergencia Açores/EU Program]. We acknowledge funds provided by FCT to LARSyS Associated Laboratory and IMAR-University of the Azores/the Thematic Area D & E of the Strategic Project PEst-OE/EEI/LA0009/2011–1012 and 2013–2014 (OE & Compete) and by the FRCT - Government of the Azores pluriannual funding. MAS was supported by an FCT postdoctoral grant (SFRH/BPD/29841/2006) and is currently supported by POPH, QREN European Social Fund and the Portuguese Ministry for Science and Education through an FCT Investigator grant. RP was supported by an FCT doctoral grant (SFRH/BD/41192/2007) and by the research grant from the Azores Regional Fund for Science and Technology (M3.1.5/F/115/2012). IJ was supported by the Natural Sciences and Engineering Research Council (NSERC) and the Canada Foundation for Innovation (CFI) through their support of the Ocean Tracking Network. DJFR is funded by the United Kingdom Department of Energy and Climate Change as part of their Offshore Energy Strategic Environmental Assessment program. DT is funded by Natural Environment Research Council and Marine Scotland.
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    Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e94249, doi:10.1371/journal.pone.0094249.
    Description: The exploration of microbial communities by sequencing 16S rRNA genes has expanded with low-cost, high-throughput sequencing instruments. Illumina-based 16S rRNA gene sequencing has recently gained popularity over 454 pyrosequencing due to its lower costs, higher accuracy and greater throughput. Although recent reports suggest that Illumina and 454 pyrosequencing provide similar beta diversity measures, it remains to be demonstrated that pre-existing 454 pyrosequencing workflows can transfer directly from 454 to Illumina MiSeq sequencing by simply changing the sequencing adapters of the primers. In this study, we modified 454 pyrosequencing primers targeting the V4-V5 hyper-variable regions of the 16S rRNA gene to be compatible with Illumina sequencers. Microbial communities from cows, humans, leeches, mice, sewage, and termites and a mock community were analyzed by 454 and MiSeq sequencing of the V4-V5 region and MiSeq sequencing of the V4 region. Our analysis revealed that reference-based OTU clustering alone introduced biases compared to de novo clustering, preventing certain taxa from being observed in some samples. Based on this we devised and recommend an analysis pipeline that includes read merging, contaminant filtering, and reference-based clustering followed by de novo OTU clustering, which produces diversity measures consistent with de novo OTU clustering analysis. Low levels of dataset contamination with Illumina sequencing were discovered that could affect analyses that require highly sensitive approaches. While moving to Illumina-based sequencing platforms promises to provide deeper insights into the breadth and function of microbial diversity, our results show that care must be taken to ensure that sequencing and processing artifacts do not obscure true microbial diversity.
    Description: This work was partially funded by an Emerging Frontiers in Research and Innovation – Multicellular and Inter-kingdom Signaling (EFRI-MIKS) grant awarded by the US National Science Foundation to Joerg Graf and NIH RO1 GM095390 to JG and HGM.
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    First autonomous bio-optical profiling float in the Gulf of Mexico reveals dynamic biogeochemistry in deep waters (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: This is an open-access article, free of all copyright. The definitive version was published in PLoS One 9 (2014): e101658, doi:10.1371/journal.pone.0101658.
    Description: Profiling floats equipped with bio-optical sensors well complement ship-based and satellite ocean color measurements by providing highly-resolved time-series data on the vertical structure of biogeochemical processes in oceanic waters. This is the first study to employ an autonomous profiling (APEX) float in the Gulf of Mexico for measuring spatiotemporal variability in bio-optics and hydrography. During the 17-month deployment (July 2011 to December 2012), the float mission collected profiles of temperature, salinity, chlorophyll fluorescence, particulate backscattering (bbp), and colored dissolved organic matter (CDOM) fluorescence from the ocean surface to a depth of 1,500 m. Biogeochemical variability was characterized by distinct depth trends and local “hot spots”, including impacts from mesoscale processes associated with each of the water masses sampled, from ambient deep waters over the Florida Plain, into the Loop Current, up the Florida Canyon, and eventually into the Florida Straits. A deep chlorophyll maximum (DCM) occurred between 30 and 120 m, with the DCM depth significantly related to the unique density layer ρ = 1023.6 (R2 = 0.62). Particulate backscattering, bbp, demonstrated multiple peaks throughout the water column, including from phytoplankton, deep scattering layers, and resuspension. The bio-optical relationship developed between bbp and chlorophyll (R2 = 0.49) was compared to a global relationship and could significantly improve regional ocean-color algorithms. Photooxidation and autochthonous production contributed to CDOM distributions in the upper water column, whereas in deep water, CDOM behaved as a semi-conservative tracer of water masses, demonstrating a tight relationship with density (R2 = 0.87). In the wake of the Deepwater Horizon oil spill, this research lends support to the use of autonomous drifting profilers as a powerful tool for consideration in the design of an expanded and integrated observing network for the Gulf of Mexico.
    Description: This project was funded by Bureau of Ocean Energy Management (BOEM) Contract M10PC00112 to Leidos, Inc. with subcontract to ASB (www.boem.gov).
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    PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010 : 1. Toxin levels (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 329–349, doi:10.1016/j.dsr2.2013.04.013.
    Description: As part of the NOAA ECOHAB funded Gulf of Maine Toxicity (GOMTOX)1 project, we determined Alexandrium fundyense abundance, paralytic shellfish poisoning (PSP) toxin composition, and concentration in quantitatively-sampled size-fractionated (20–64, 64–100, 100–200, 200–500, and 〉500 μm) particulate water samples, and the community composition of potential grazers of A. fundyense in these size fractions, at multiple depths (typically 1, 10, 20 m, and near-bottom) during 10 large-scale sampling cruises during the A. fundyense bloom season (May–August) in the coastal Gulf of Maine and on Georges Bank in 2007, 2008, and 2010. Our findings were as follows: (1) when all sampling stations and all depths were summed by year, the majority (94%±4%) of total PSP toxicity was contained in the 20–64 μm size fraction; (2) when further analyzed by depth, the 20–64 μm size fraction was the primary source of toxin for 97% of the stations and depths samples over three years; (3) overall PSP toxin profiles were fairly consistent during the three seasons of sampling with gonyautoxins (1, 2, 3, and 4) dominating (90.7%±5.5%), followed by the carbamate toxins saxitoxin (STX) and neosaxitoxin (NEO) (7.7%±4.5%), followed by n-sulfocarbamoyl toxins (C1 and 2, GTX5) (1.3%±0.6%), followed by all decarbamoyl toxins (dcSTX, dcNEO, dcGTX2&3) (〈1%), although differences were noted between PSP toxin compositions for nearshore coastal Gulf of Maine sampling stations compared to offshore Georges Bank sampling stations for 2 out of 3 years; (4) surface cell counts of A. fundyense were a fairly reliable predictor of the presence of toxins throughout the water column; and (5) nearshore surface cell counts of A. fundyense in the coastal Gulf of Maine were not a reliable predictor of A. fundyense populations offshore on Georges Bank for 2 out of the 3 years sampled.
    Description: Vangie Shue was supported through the FDA and also through the Thomas Jefferson High School for Science and Technology Mentorship Program. Research support was provided by National Oceanic and Atmospheric Administration Grant NA06NOS4780245 for the Gulf of Maine Toxicity (GOMTOX) program. BAK, DJM, and DMA were partially supported by the Woods Hole Center for Oceans and Human Health through National Science Foundation Grants OCE-0430724 and OCE-0911031 and National Institute of Environmental Health Sciences Grant 1P50-ES01274201.
    Keywords: Harmful algal bloom ; PSP toxins ; Alexandrium sp. ; Vectorial intoxication ; Gulf of Maine ; Georges Bank
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    Near-bottom circulation and dispersion of sediment containing Alexandrium fundyense cysts in the Gulf of Maine during 2010–2011 (2014)
    Elsevier
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 96–111, doi:10.1016/j.dsr2.2013.11.003.
    Description: The life cycle of Alexandrium fundyense in the Gulf of Maine includes a dormant cyst stage that spends the winter predominantly in the bottom sediment. Wave-current bottom stress caused by storms and tides induces resuspension of cyst-containing sediment during winter and spring. Resuspended sediment could be transported by water flow to different locations in the Gulf and the redistribution of sediment containing A. fundyense cysts could alter the spatial and temporal manifestation of its spring bloom. The present study evaluates model near-bottom flow during storms, when sediment resuspension and redistribution are most likely to occur, between October and May when A. fundyense cells are predominantly in cyst form. Simulated water column sediment (mud) concentrations from representative locations of the Gulf are used to initialize particle tracking simulations for the period October 2010–May 2011. Particles are tracked in full three-dimensional model solutions including a sinking velocity characteristic of cyst and aggregated mud settling (0.1 mm s−1). Although most of the material was redeposited near the source areas, small percentages of total resuspended sediment from some locations in the western (~4%) and eastern (2%) Maine shelf and the Bay of Fundy (1%) traveled distances longer than 100 km before resettling. The redistribution changed seasonally and was sensitive to the prescribed sinking rate. Estimates of the amount of cysts redistributed with the sediment were small compared to the inventory of cysts in the upper few centimeters of sediment but could potentially have more relevance immediately after deposition.
    Description: Research support to all authors, except DJM and VAS, was provided by U.S. Geological Survey. DJM gratefully acknowledges financial support of the National Oceanic and Atmospheric Administration (Grant NA06NOS4780245 for the Gulf of Maine Toxicity (GOMTOX) program) and the Woods Hole Center for Oceans and Human Health through National Science Foundation Grant OCE-1314642 and National Institute of Environmental Health Sciences Grant 1P01ES021923-01. VAS was supported by the North East Consortium Grant NA05NMF4721057.
    Keywords: Sediment connectivity ; Near-bottom circulation ; Harmful Algal Bloom cysts ; Gulf of Maine ; Alexandrium fundyense ; Particle tracking
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    Swimming speed of larval snail does not correlate with size and ciliary beat frequency (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 8 (2013): e82764, doi:10.1371/journal.pone.0082764.
    Description: Many marine invertebrates have planktonic larvae with cilia used for both propulsion and capturing of food particles. Hence, changes in ciliary activity have implications for larval nutrition and ability to navigate the water column, which in turn affect survival and dispersal. Using high-speed high-resolution microvideography, we examined the relationship between swimming speed, velar arrangements, and ciliary beat frequency of freely swimming veliger larvae of the gastropod Crepidula fornicata over the course of larval development. Average swimming speed was greatest 6 days post hatching, suggesting a reduction in swimming speed towards settlement. At a given age, veliger larvae have highly variable speeds (0.8–4 body lengths s−1) that are independent of shell size. Contrary to the hypothesis that an increase in ciliary beat frequency increases work done, and therefore speed, there was no significant correlation between swimming speed and ciliary beat frequency. Instead, there are significant correlations between swimming speed and visible area of the velar lobe, and distance between centroids of velum and larval shell. These observations suggest an alternative hypothesis that, instead of modifying ciliary beat frequency, larval C. fornicata modify swimming through adjustment of velum extension or orientation. The ability to adjust velum position could influence particle capture efficiency and fluid disturbance and help promote survival in the plankton.
    Description: K.Y.K. Chan was supported by the Postdoctoral Scholar 1 Program at the Woods Hole Oceanographic Institution (WHOI), with funding provided by the Coastal Ocean Institute, the Croucher Foundation, and the Royal Swedish Academy of Sciences. H. Jiang was supported by National Science Foundation grant NSF OCE-1129496 and an award from WHOI's Ocean Life Institute, and D.K. Padilla was supported by NSF IOS-0920032.
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    Indirect human impacts reverse centuries of carbon sequestration and salt marsh accretion (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e93296, doi:10.1371/journal.pone.0093296.
    Description: Direct and indirect human impacts on coastal ecosystems have increased over the last several centuries, leading to unprecedented degradation of coastal habitats and loss of ecological services. Here we document a two-century temporal disparity between salt marsh accretion and subsequent loss to indirect human impacts. Field surveys, manipulative experiments and GIS analyses reveal that crab burrowing weakens the marsh peat base and facilitates further burrowing, leading to bank calving, disruption of marsh accretion, and a loss of over two centuries of sequestered carbon from the marsh edge in only three decades. Analogous temporal disparities exist in other systems and are a largely unrecognized obstacle in attaining sustainable ecosystem services in an increasingly human impacted world. In light of the growing threat of indirect impacts worldwide and despite uncertainties in the fate of lost carbon, we suggest that estimates of carbon emissions based only on direct human impacts may significantly underestimate total anthropogenic carbon emissions.
    Description: This research was made possible by a grant from the National Science Foundation Biological Oceanography Program and the Brown University Undergraduate Teaching and Research Award Program.
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    Humpback whale populations share a core skin bacterial community : towards a health index for marine mammals? (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e90785, doi:10.1371/journal.pone.0090785.
    Description: Microbes are now well regarded for their important role in mammalian health. The microbiology of skin – a unique interface between the host and environment - is a major research focus in human health and skin disorders, but is less explored in other mammals. Here, we report on a cross-population study of the skin-associated bacterial community of humpback whales (Megaptera novaeangliae), and examine the potential for a core bacterial community and its variability with host (endogenous) or geographic/environmental (exogenous) specific factors. Skin biopsies or freshly sloughed skin from 56 individuals were sampled from populations in the North Atlantic, North Pacific and South Pacific oceans and bacteria were characterized using 454 pyrosequencing of SSU rRNA genes. Phylogenetic and statistical analyses revealed the ubiquity and abundance of bacteria belonging to the Flavobacteria genus Tenacibaculum and the Gammaproteobacteria genus Psychrobacter across the whale populations. Scanning electron microscopy of skin indicated that microbial cells colonize the skin surface. Despite the ubiquity of Tenacibaculum and Psychrobater spp., the relative composition of the skin-bacterial community differed significantly by geographic area as well as metabolic state of the animals (feeding versus starving during migration and breeding), suggesting that both exogenous and endogenous factors may play a role in influencing the skin-bacteria. Further, characteristics of the skin bacterial community from these free-swimming individuals were assembled and compared to two entangled and three dead individuals, revealing a decrease in the central or core bacterial community members (Tenacibaculum and Psychrobater spp.), as well as the emergence of potential pathogens in the latter cases. This is the first discovery of a cross-population, shared skin bacterial community. This research suggests that the skin bacteria may be connected to humpback health and immunity and could possibly serve as a useful index for health and skin disorder monitoring of threatened and endangered marine mammals.
    Description: A.A. was funded by a WHOI Ocean Life Institute post-doctoral scholar award, and this research was supported by a grant to A.A. and T.J.M. from Woods Hole Oceanographic Institution's (WHOI) Marine Mammal Center.
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    Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: The work is made available under the Creative Commons CC0 public domain dedication. The definitive version was published in PLoS One 9 (2014): e95380, doi:10.1371/journal.pone.0095380.
    Description: Marine Group I (MGI) Thaumarchaeota are one of the most abundant and cosmopolitan chemoautotrophs within the global dark ocean. To date, no representatives of this archaeal group retrieved from the dark ocean have been successfully cultured. We used single cell genomics to investigate the genomic and metabolic diversity of thaumarchaea within the mesopelagic of the subtropical North Pacific and South Atlantic Ocean. Phylogenetic and metagenomic recruitment analysis revealed that MGI single amplified genomes (SAGs) are genetically and biogeographically distinct from existing thaumarchaea cultures obtained from surface waters. Confirming prior studies, we found genes encoding proteins for aerobic ammonia oxidation and the hydrolysis of urea, which may be used for energy production, as well as genes involved in 3-hydroxypropionate/4-hydroxybutyrate and oxidative tricarboxylic acid pathways. A large proportion of protein sequences identified in MGI SAGs were absent in the marine cultures Cenarchaeum symbiosum and Nitrosopumilus maritimus, thus expanding the predicted protein space for this archaeal group. Identifiable genes located on genomic islands with low metagenome recruitment capacity were enriched in cellular defense functions, likely in response to viral infections or grazing. We show that MGI Thaumarchaeota in the dark ocean may have more flexibility in potential energy sources and adaptations to biotic interactions than the existing, surface-ocean cultures.
    Description: This work was supported by NSF grants EF-826924 (R.S.), OCE-821374 (R.S.) and OCE-1232982 (R.S. and B.K.S.); the DOE JGI 2010 Microbes Program grant CSP77 (R.S. and M.E.S.); National Institutes of Health grant 1UH2DK083993 (H.G.M.). Work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The contributions of S.K. were funded under Agreement No. HSHQDC-07-C-00020 awarded by the Department of Homeland Security (DHS) for the management and operation of the National Biodefense Analysis and Countermeasures Center (NBACC), a Federally Funded Research and Development Center.
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    Investigating the importance of sediment resuspension in Alexandrium fundyense cyst population dynamics in the Gulf of Maine (2014)
    Elsevier
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 103 (2014): 79–95, doi:10.1016/j.dsr2.2013.10.011.
    Description: Cysts of Alexandrium fundyense, a dinoflagellate that causes toxic algal blooms in the Gulf of Maine, spend the winter as dormant cells in the upper layer of bottom sediment or the bottom nepheloid layer and germinate in spring to initiate new blooms. Erosion measurements were made on sediment cores collected at seven stations in the Gulf of Maine in the autumn of 2011 to explore if resuspension (by waves and currents) could change the distribution of over-wintering cysts from patterns observed in the previous autumn; or if resuspension could contribute cysts to the water column during spring when cysts are viable. The mass of sediment eroded from the core surface at 0.4 Pa ranged from 0.05 kg m−2 near Grand Manan Island, to 0.35 kg m−2 in northern Wilkinson Basin. The depth of sediment eroded ranged from about 0.05 mm at a station with sandy sediment at 70 m water depth on the western Maine shelf, to about 1.2 mm in clayey–silt sediment at 250 m water depth in northern Wilkinson Basin. The sediment erodibility measurements were used in a sediment-transport model forced with modeled waves and currents for the period October 1, 2010 to May 31, 2011 to predict resuspension and bed erosion. The simulated spatial distribution and variation of bottom shear stress was controlled by the strength of the semi-diurnal tidal currents, which decrease from east to west along the Maine coast, and oscillatory wave-induced currents, which are strongest in shallow water. Simulations showed occasional sediment resuspension along the central and western Maine coast associated with storms, steady resuspension on the eastern Maine shelf and in the Bay of Fundy associated with tidal currents, no resuspension in northern Wilkinson Basin, and very small resuspension in western Jordan Basin. The sediment response in the model depended primarily on the profile of sediment erodibility, strength and time history of bottom stress, consolidation time scale, and the current in the water column. Based on analysis of wave data from offshore buoys from 1996 to 2012, the number of wave events inducing a bottom shear stress large enough to resuspend sediment at 80 m ranged from 0 to 2 in spring (April and May) and 0 to 10 in winter (October through March). Wave-induced resuspension is unlikely in water greater than about 100 m deep. The observations and model results suggest that a millimeter or so of sediment and associated cysts may be mobilized in both winter and spring, and that the frequency of resuspension will vary interannually. Depending on cyst concentration in the sediment and the vertical distribution in the water column, these events could result in a concentration in the water column of at least 104 cysts m−3. In some years, resuspension events could episodically introduce cysts into the water column in spring, where germination is likely to be facilitated at the time of bloom formation. An assessment of the quantitative effects of cyst resuspension on bloom dynamics in any particular year requires more detailed investigation.
    Description: Research support to Donald M. Anderson and Bruce A. Keafer provided through the Woods Hole Center for Oceans and Human Health; National Science Foundation Grants OCE-0430724 and OCE-0911031; and National Institute of Environmental Health Sciences Grant 1-P50-ES012742-01; the ECOHAB Grant program through NOAA Grants NA06NOS4780245 and A09NOS4780193; the MERHAB Grant program through NOAA Grant NA11NOS4780025; and the PCMHAB Grant program through NOAA Grant NA11NOS4780023. Research support to all other authors was provided by U.S. Geological Survey.
    Keywords: Sediment transport ; Bottom stress ; Sediment resuspension ; Harmful algal blooms ; Gulf of Maine ; Alexandrium fundyense ; HAB
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    The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP) : illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS Biology 12 (2014): e1001889, doi:10.1371/journal.pbio.1001889.
    Description: Microbial ecology is plagued by problems of an abstract nature. Cell sizes are so small and population sizes so large that both are virtually incomprehensible. Niches are so far from our everyday experience as to make their very definition elusive. Organisms that may be abundant and critical to our survival are little understood, seldom described and/or cultured, and sometimes yet to be even seen. One way to confront these problems is to use data of an even more abstract nature: molecular sequence data. Massive environmental nucleic acid sequencing, such as metagenomics or metatranscriptomics, promises functional analysis of microbial communities as a whole, without prior knowledge of which organisms are in the environment or exactly how they are interacting. But sequence-based ecological studies nearly always use a comparative approach, and that requires relevant reference sequences, which are an extremely limited resource when it comes to microbial eukaryotes. In practice, this means sequence databases need to be populated with enormous quantities of data for which we have some certainties about the source. Most important is the taxonomic identity of the organism from which a sequence is derived and as much functional identification of the encoded proteins as possible. In an ideal world, such information would be available as a large set of complete, well-curated, and annotated genomes for all the major organisms from the environment in question. Reality substantially diverges from this ideal, but at least for bacterial molecular ecology, there is a database consisting of thousands of complete genomes from a wide range of taxa, supplemented by a phylogeny-driven approach to diversifying genomics. For eukaryotes, the number of available genomes is far, far fewer, and we have relied much more heavily on random growth of sequence databases, raising the question as to whether this is fit for purpose.
    Description: This project was funded by the Gordon and Betty Moore Foundation (GBMF; Grants GBMF2637 and GBMF3111) to the National Center for Genome Resources (NCGR) and the National Center for Marine Algae and Microbiota (NCMA).
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    Assessing the health of the U.S. west coast with a regional-scale application of the Ocean Health Index (2014)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: This is an open-access article, free of all copyright. The definitive version was published in PLoS One 9 (2014): e98995, doi:10.1371/journal.pone.0098995.
    Description: Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health, but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions scoring from 65 (Washington) to 74 (Oregon). Highest scoring goals included tourism and recreation (99) and clean waters (87), while the lowest scoring goals were sense of place (48) and artisanal fishing opportunities (57). Surprisingly, even in this well-studied area data limitations precluded robust assessments of past trends in overall ocean health. Nonetheless, retrospective calculation of current status showed that many goals have declined, by up to 20%. In contrast, near-term future scores were on average 6% greater than current status across all goals and sub-regions. Application of hypothetical but realistic management scenarios illustrate how the Index can be used to predict and understand the tradeoffs among goals and consequences for overall ocean health. We illustrate and discuss how this index can be used to vet underlying assumptions and decisions with local stakeholders and decision-makers so that scores reflect regional knowledge, priorities and values. We also highlight the importance of ongoing and future monitoring that will provide robust data relevant to ocean health assessment.
    Description: Beau and Heather Wrigley generously provided the founding grant. Additional financial and in-kind support was provided by the Pacific Life Foundation, Thomas W. Haas Fund of the New Hampshire Charitable Foundation, the Oak Foundation, Akiko Shiraki Dynner Fund for Ocean Exploration and Conservation, Darden Restaurants Inc. Foundation, Conservation International, New England Aquarium, National Geographic, and the University of California Santa Barbara's National Center for Ecological Analysis and Synthesis, which supported the Ecosystem Health Working Group as part of the Science of Ecosystem-Based Management project funded by the David and Lucile Packard Foundation. Individual authors also acknowledge support from the U.S. National Science Foundation.
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    Modification of the Quaternary stratigraphic framework of the inner-continental shelf by Holocene marine transgression : an example offshore of Fire Island, New York (2014)
    Elsevier
    Details
    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Marine Geology 355 (2014): 346–360, doi:10.1016/j.margeo.2014.06.011.
    Description: The inner-continental shelf off Fire Island, New York was mapped in 2011 using interferometric sonar and high-resolution chirp seismic-reflection systems. The area mapped is approximately 50 km long by 8 km wide, extending from Moriches Inlet to Fire Island Inlet in water depths ranging from 8 to 32 m. The morphology of this inner-continental shelf region and modern sediment distribution patterns are determined by erosion of Pleistocene glaciofluvial sediments during the ongoing Holocene marine transgression; much of the shelf is thus an actively forming ravinement surface. Remnants of a Pleistocene outwash lobe define a submerged headland offshore of central Fire Island. East of the submerged headland, relatively older Pleistocene outwash is exposed over much of the inner-continental shelf and covered by asymmetric, sorted bedforms interpreted to indicate erosion and westward transport of reworked sediment. Erosion of the eastern flank of the submerged Pleistocene headland over the last ~ 8000 years yielded an abundance of modern sand that was transported westward and reworked into a field of shoreface-attached ridges offshore of western Fire Island. West of the submerged headland, erosion of Pleistocene outwash continues in troughs between the sand ridges, resulting in modification of the lower shoreface. Comparison of the modern sand ridge morphology with the morphology of the underlying ravinement surface suggests that the sand ridges have moved a minimum of ~ 1000 m westward since formation. Comparison of modern sediment thickness mapped in 1996–1997 and 2011 allows speculation that the nearshore/shoreface sedimentary deposit has gained sediment at the expense of deflation of the sand ridges.
    Description: This research was funded by the U.S. Geological Survey, Coastal and Marine Geology Program.
    Keywords: Seafloor mapping ; Inner-continental shelf ; Shoreface ; Sand ridges ; Sorted bedforms ; Sediment transport ; Ravinement surface ; Quaternary stratigraphy
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    Evolutionary strategies of viruses, bacteria and archaea in hydrothermal vent ecosystems revealed through metagenomics (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e109696, doi:10.1371/journal.pone.0109696.
    Description: The deep-sea hydrothermal vent habitat hosts a diverse community of archaea and bacteria that withstand extreme fluctuations in environmental conditions. Abundant viruses in these systems, a high proportion of which are lysogenic, must also withstand these environmental extremes. Here, we explore the evolutionary strategies of both microorganisms and viruses in hydrothermal systems through comparative analysis of a cellular and viral metagenome, collected by size fractionation of high temperature fluids from a diffuse flow hydrothermal vent. We detected a high enrichment of mobile elements and proviruses in the cellular fraction relative to microorganisms in other environments. We observed a relatively high abundance of genes related to energy metabolism as well as cofactors and vitamins in the viral fraction compared to the cellular fraction, which suggest encoding of auxiliary metabolic genes on viral genomes. Moreover, the observation of stronger purifying selection in the viral versus cellular gene pool suggests viral strategies that promote prolonged host integration. Our results demonstrate that there is great potential for hydrothermal vent viruses to integrate into hosts, facilitate horizontal gene transfer, and express or transfer genes that manipulate the hosts’ functional capabilities.
    Description: Funding for sequencing of the viral metagenome was provided by the Gordon and Betty Moore Foundation. All other funding was provided by a NASA Astrobiology Institute grant through Cooperative Agreement NNA04CC09A to the Geophysical Laboratory at the Carnegie Institution for Science. R.A. was funded by a NSF Graduate Research Fellowship through NSF grant number DGE-0718124, an NSF IGERT grant to the University of Washington Astrobiology Program, and the ARCS Foundation.
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    The transcriptional response to oxidative stress during vertebrate development : effects of tert-butylhydroquinone and 2,3,7,8-tetrachlorodibenzo-p-dioxin (2014)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e113158, doi:10.1371/journal.pone.0113158.
    Description: Oxidative stress is an important mechanism of chemical toxicity, contributing to teratogenesis and to cardiovascular and neurodegenerative diseases. Developing animals may be especially sensitive to chemicals causing oxidative stress. The developmental expression and inducibility of anti-oxidant defenses through activation of NF-E2-related factor 2 (NRF2) affect susceptibility to oxidants, but the embryonic response to oxidants is not well understood. To assess the response to chemically mediated oxidative stress and how it may vary during development, zebrafish embryos, eleutheroembryos, or larvae at 1, 2, 3, 4, 5, and 6 days post fertilization (dpf) were exposed to DMSO (0.1%), tert-butylhydroquinone (tBHQ; 10 µM) or 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD; 2 nM) for 6 hr. Transcript abundance was assessed by real-time qRT-PCR and microarray. qRT-PCR showed strong (4- to 5-fold) induction of gstp1 by tBHQ as early as 1 dpf. tBHQ also induced gclc (2 dpf), but not sod1, nqo1, or cyp1a. TCDD induced cyp1a but none of the other genes. Microarray analysis showed that 1477 probes were significantly different among the DMSO-, tBHQ-, and TCDD-treated eleutheroembryos at 4 dpf. There was substantial overlap between genes induced in developing zebrafish and a set of marker genes induced by oxidative stress in mammals. Genes induced by tBHQ in 4-dpf zebrafish included those involved in glutathione synthesis and utilization, signal transduction, and DNA damage/stress response. The strong induction of hsp70 determined by microarray was confirmed by qRT-PCR and by use of transgenic zebrafish expressing enhanced green fluorescent protein (EGFP) under control of the hsp70 promoter. Genes strongly down-regulated by tBHQ included mitfa, providing a molecular explanation for the loss of pigmentation in tBHQ-exposed embryos. These data show that zebrafish embryos are responsive to oxidative stress as early as 1 dpf, that responsiveness varies with development in a gene-specific manner, and that the oxidative stress response is substantially conserved in vertebrate animals.
    Description: This research was supported in part by National Institutes of Health grants R01ES016366 (MEH), R01ES006272 (MEH), R01ES015912 (JJS), and F32ES017585 (ART-L), the Andrew W. Mellon Foundation Endowed Fund for Innovative Research, a WHOI (Woods Hole Oceanographic Institution) Postdoctoral Scholar award, and the Walter A. and Hope Noyes Smith endowed chair (MEH). AGM and MJC were supported in part by the Marine Biological Laboratory's Program in Global Infectious Disease, funded by the Ellison Medical Foundation.
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    Earth and Life Processes Discovered from Subseafloor Environment - A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP) (2014)
    Elsevier
    In:  EPIC3Amsterdam, Elsevier, 804 p., ISBN: 978-0-444-62617-2
    Details
    Publication Date: 2023-06-21
    Repository Name: EPIC Alfred Wegener Institut
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    Mechanistic Study of the Photochemical Isomerization Reactions of Silabenzene (2014)
    American Chemical Society
    Details
    Publication Date: 2014-09-24
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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    Synthesis and Hydrogenation Activity of Iron Dialkyl Complexes with Chiral Bidentate Phosphines (2014)
    American Chemical Society
    Details
    Publication Date: 2014-06-09
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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    Iron-Catalyzed Hydromagnesiation: Synthesis and Characterization of Benzylic Grignard Reagent Intermediate and Application in the Synthesis of Ibuprofen (2014)
    American Chemical Society
    Details
    Publication Date: 2014-06-05
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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    Rh–FHF and Rh–F Complexes Containing Small N-Alkyl Substituted Six-Membered Ring N-Heterocyclic Carbenes (2014)
    American Chemical Society
    Details
    Publication Date: 2014-04-09
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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    Homoallylpinacolboronic Ester as Alkene Component in Cobalt-Catalyzed Alder Ene Reactions (2014)
    American Chemical Society
    Details
    Publication Date: 2014-06-10
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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    Catalytic and Organometallic Chemistry of Earth-Abundant Metals (2014)
    American Chemical Society
    Details
    Publication Date: 2014-10-27
    Print ISSN: 0276-7333
    Electronic ISSN: 1520-6041
    Topics: Chemistry and Pharmacology
    Published by American Chemical Society
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