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  • 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy
  • 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques
  • 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
  • Bacteria
  • Freshwater Biological Association  (30)
  • Istituto Nazionale di Geofisica e Vulcanologia  (15)
  • Frontiers Media SA  (14)
  • American Chemical Society
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  • 1
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4787 | 1256 | 2011-09-29 15:54:01 | 4787 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: Many sides of the biology of Polyphemus pediculus are adequately studied at the present time. Most complicated is the question of its feeding. Dissection does not give an idea of the composition of the food, since Polyphemus strongly grinds its food with its mandibles. For clarification of the composition of the food of Polyphemus pediculus, the authors carried out in July and August 1962 a series of experiments with the application of radio-carbon methods in order to judge the degree of utilization of one or other foods by the quantity of C14, accumulated in the body of the crustacean after feeding. Particular attention in these experiments was given to the question of the possibility of the utilization by polyphemus of plant food - bacteria, algae and detritus.
    Beschreibung: Translated from Russian into English
    Schlagwort(e): Biology ; Ecology ; Limnology ; Freshwater crustaceans ; Food composition ; Feeding ; Algae ; Carbon 14 ; Bacteria ; Detritus ; Polyphemus pediculus
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 2
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4793 | 1256 | 2011-09-29 15:52:47 | 4793 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: Recent research has shown that the biomass of bacteria in lakes and other water-bodies can attain significant values. The huge production of bacteria is brought about by their great rate of reproduction. In a series of cases their biomass exceeds the biomass of phytoplankton. Therefore in a study of the biological productivity of water bodies it is necessary to calculate the biomass and production not only of the phyto- and zooplankton, but also of bacteria.The authors uses different methods and formulae to to compare the time of one generation of the bacteria.
    Beschreibung: Translated from Russian into English
    Schlagwort(e): Biology ; Ecology ; Limnology ; Bacteria ; Biomass ; Formulae ; Growth rate ; Russia ; Lake Batorin
    Repository-Name: AquaDocs
    Materialart: monograph
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  • 3
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4812 | 1256 | 2011-09-29 15:51:26 | 4812 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: By now a great deal of work is known concerning the methods of determining the production of bacteria or similar questions; among these the problems of a common terminology is discussed. The article discusses formulae of production of bacterial populations over time.
    Beschreibung: Translated into English
    Schlagwort(e): Biology ; Limnology ; Bacteria ; Population number ; Formulae ; Terminology
    Repository-Name: AquaDocs
    Materialart: monograph
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  • 4
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4844 | 1256 | 2011-09-29 15:49:32 | 4844 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: A modified method of the Biochemical oxygen demand (BOD)test was applied in order to find out the seasonal changing activity of the nitrifying bacteria in surface waters. Samples were taken from the River Elbe near Teufelsbrueck.
    Beschreibung: Translated from German into English
    Schlagwort(e): Ecology ; Limnology ; Experimental research ; Dissolved oxygen ; Analytical techniques ; Water analysis ; Nitrification ; Bacteria ; Surface water
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 5
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4848 | 1256 | 2011-09-29 15:49:18 | 4848 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: When dissolved in water, compounds of nitrogen and phosphorus ought to contain the basic assimilated food requirements for autotrophic plants and therefore autotrophic algae. This article summarises the occurrence of nitrogen in water, how species of algae utilize nitrogen and phosphorus forms for growth and the capacities of algae to adapt to environments of different nutrient wealth. This topic has unquestionable importance not only for the purpose of survival of a species but also in deciding indirectly about the stability of ecosystems.
    Beschreibung: Translated from Polish into English
    Schlagwort(e): Biology ; Chemistry ; Limnology ; Algae ; Nitrogen fixation ; Nitrogen ; Phosphorus ; Nutritional requirements ; Bacteria ; Organic compounds
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 6
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4856 | 1256 | 2011-09-29 15:48:26 | 4856 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: Pseudomonas aeruginosa has for some time been known as a denitrifier. Pseudomonas aeruginosa was chosen for further studies, because P. aeruginosa occurs abundantly in Plusssee and moreover there are contradictory assertions on the gas products of denitrification by this bacteria. In experimental research the pattern of growth and gas production of Pseudomonas aeruginosa on nutrient broth was studied.
    Beschreibung: Translated from German into English
    Schlagwort(e): Chemistry ; Ecology ; Limnology ; Experimental research ; Bacteria ; Freshwater lakes ; Growth ; Microbiological culture ; Plusssee
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 7
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4850 | 1256 | 2011-09-29 15:48:48 | 4850 | Freshwater Biological Association
    Publikationsdatum: 2021-07-06
    Beschreibung: In a lake the nitrogen compounds are liable to regular cycling in which nitrate is reduced and ammonium oxidised. As a nitrate maximum is regularly established in the upper part of the hypolimnion of a stratified summer lake, the authors have dealt in particular with the oxidising side of the nitrogen cycle. Described here are partial results of the nitrification in Plusssee. The Plusssee was chosen, since it is almost entirely without inflows, and, lying in a wooded basin, is well protected from the wind, and therefore stably stratified. In order to determine the number of autotrophic nitrificants the distribution of the Nitrosomonas and Nitrobacter spores in the lake were analysed. From the estimates on the determination of spore numbers of the heterotrophic nitrificants, 14 species in the pure culture were isolated and examined from morphological, biochemical and taxonomic viewpoints.
    Beschreibung: Translated from German into English
    Schlagwort(e): Ecology ; Limnology ; Bacteria ; Ammonia ; Freshwater lakes ; Nitrification ; Nitrogen cycle
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 8
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4884 | 1256 | 2011-09-29 15:46:23 | 4884 | Freshwater Biological Association
    Publikationsdatum: 2021-07-07
    Beschreibung: The radioautographic method of determination of the number of autotrophic microorganisms was initially suggested for counting methane-oxidizing bacteria. With the help of this method colonies of hydrogen-oxidizing bacteria are differentiated even more clearly from heterotrophic. Under laboratory conditions it was shown that colonies grown on membrane filters from a pure culture of thionic bacteria on a nutrient medium with radio- active carbonate, give better prints on film. This method was tested by the authors for determining the number of these bacteria in the meromictic Lake Vae de San Juan during the expedition to Cuba in the summer of 1973. The study showed that that the thionic bacteria are found throughout the pelagial. It proved that the thionic bacteria can be well considered in water-bodies by the radioautographic method.
    Beschreibung: Translated from Russian into English
    Schlagwort(e): Ecology ; Limnology ; Freshwater lakes ; Photography ; Bacteria ; Methodology ; Analytical techniques ; Cuba
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
    Format: application/pdf
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  • 9
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4903 | 1256 | 2011-09-29 15:44:11 | 4903 | Freshwater Biological Association
    Publikationsdatum: 2021-07-07
    Beschreibung: Description of a simple method for counting bacteria with active electron transport systems in water and sediment samples. Sodium succinate, NADH and NADPH served as electron donors. It is possible to see several sites of electron transport in the larger cells. Especially impressive are the plankton-algae, protozoa, and small metazoa. This is a partial translation of the ”method” section only.
    Beschreibung: Translated from German into English
    Schlagwort(e): Biology ; Limnology ; Water samples ; Bacteria ; Bacterial counters ; Bacterial filtration ; Methodology
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 10
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4964 | 1256 | 2011-09-29 15:39:04 | 4964 | Freshwater Biological Association
    Publikationsdatum: 2021-07-07
    Beschreibung: The nitrification in the ocean is influenced by several environmental factors and the importance of these is more or less known. There are very likely many more to be discovered in the study of the interaction of nitrification bacteria and other micro-organisms in the ocean. Some of the factors to be considered will briefly be dealt with in this paper. Then the authors give the results of an incubation experiment in the Baltic Sea and from a detailed study in Gullmarn.
    Beschreibung: Translated from Swedish into English
    Schlagwort(e): Chemistry ; Ecology ; Oceanography ; Marine ecology ; Nitrification ; Experimental research ; Sediment analysis ; Bacteria ; Carbon fixation ; Nitrosococcus oceanus ; Nitrococcus mobilis
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 11
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4967 | 1256 | 2011-09-29 15:36:52 | 4967 | Freshwater Biological Association
    Publikationsdatum: 2021-07-07
    Beschreibung: Utilization of the heavy isotope of nitrogen as a tracer has found numerous applications in soil biology. It allows better definition of different stages of the nitrogen cycle, in particular the immobilization-mineralization cycle. In this work, the authors report the results of calculations of natural isotope ratios of nitrogen in samples of water, soil and vegetation prevailing in Dombes and discuss the possibilities of errors and coefficients of fractionation.
    Beschreibung: Translated from French into English
    Schlagwort(e): Chemistry ; Ecology ; Limnology ; Nitrogen isotopes ; Soils ; Tracers ; Bacteria ; Nitrogen compounds ; France ; Dombes
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 12
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/4975 | 1256 | 2011-09-29 15:37:31 | 4975 | Freshwater Biological Association
    Publikationsdatum: 2021-07-07
    Beschreibung: Despite the fact that it is a long time sinc e the methods of collection and quantitative estimatio n of protozoa were worked out data on the abundance of these animals in freshwaters are not very numerous. Nevertheless, Infusoria and Rhizopoda at high densities are widespread in the water and sediments of lakes and reservoirs. In order to find ou t the importance of infusoria as a food source for cyclopoids we carried out experimental investigations using C14. For this three species of cyclopoids, widely distributed in open regions of Rybinsk reservoir were selected: Cyclops vicinus, Mesocyclops oithonoides and Kesocyclops leuckarti. The data presented give evidence that the species investigated are able as predators to consume infusorian plankton arid bacteria in the form of flocs or small clumps of detritus.
    Beschreibung: Translated from Russian into English
    Schlagwort(e): Ecology ; Limnology ; Freshwater lakes ; Freshwater crustaceans ; Feeding experiments ; Bacteria ; Feeding ; Russia ; Cyclops vicinus ; Mesocyclops oithonoides ; Kesocyclops leuckarti
    Repository-Name: AquaDocs
    Materialart: monograph
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  • 13
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5287 | 1256 | 2011-09-29 15:12:00 | 5287 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Restoration of water-bodies from eutrophication has proved to be extremely difficult. Mathematical models have been used extensively to provide guidance for management decisions. The aim of this paper is to elucidate important problems of using models for predicting environmental changes. First, the necessity for a proper uncertainty assessment of the model, upon calibration, has not been widely recognized. Predictions must not be a single time trajectory; they should be a band, expressing system uncertainty and natural variability. Availability of this information may alter the decision to be taken. Second, even with well-calibrated models, there is no guarantee they will give correct projections in situations where the model is used to predict the effects of measures designed to bring the system into an entirely different ”operating point”, as is typically the case in eutrophication abatement. The concept of educated speculation is introduced to partially overcome this difficulty. Lake Veluwe is used as a case to illustrate the point. Third, as questions become more detailed, such as ”what about expected algal composition”, there is a greater probability of running into fundamental problems that are associated with predicting the behaviour of complex non-linear systems. Some of these systems show extreme initial condition sensitivity and even, perhaps, chaotic behaviour, and are therefore fundamentally unpredictable.
    Schlagwort(e): Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Phytoplankton ; Freshwater lakes ; Models ; Growth ; Modelling ; Equations ; Bacteria ; Prediction ; Netherlands ; Veluwemeer Lake
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 44-58
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  • 14
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5301 | 1256 | 2011-09-29 15:07:11 | 5301 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: The cyanobacteria that cause problems in water supply are principally the colonial forms that are buoyed up by gas vesicles. The success of these organisms is due, in part, to their gas vesicles, which enable them to perform vertical migrations or to maintain themselves in the euphotic zone. The gas vesicles are also the root cause of the problems. In calm periods they cause the cyanobacteria to float to the water surface forming noxious scums, and they may prevent the colonies from sedimenting in water treatment plants. Gas vesicles are hollow, gas-filled structures; they are rigid but can be collapsed by the application of pressure. Their critical collapse pressure is influenced by their dimensions, which vary in different organisms. Gas vesicles are formed by the assembly of two types of protein, which determine their mechanical and physical properties. Methods for collapsing gas vesicles in natural populations of cyanobacteria will be considered. They may have application to the control of cyanobacteria in water supply.
    Schlagwort(e): Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Gases ; Buoyancy ; Algae ; Bacteria ; Photosynthesis ; Growth ; Competition
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 150-162
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  • 15
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5317 | 1256 | 2011-09-29 15:05:35 | 5317 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Most microbiological methods require culture to allow organisms to recover or to selectively increase, and target organisms are identified by growth on specific agar media. Many cultural methods take several days to complete and even then the results require confirmation. Alternative techniques include the use of chromogenic and fluorogenic substances to identify bacteria as they are growing, selective capture using antibodies after short periods of growth, molecular techniques, and direct staining with or without flow cytometry for enumeration and identification. Future microbiologists may not use culture but depend on the use of specific probes and sophisticated detection systems.
    Schlagwort(e): Engineering ; Limnology ; Pollution ; Water quality ; Microorganisms ; Methodology ; Detection ; Bacteria ; Cultured organisms ; Enzymes ; Immunofluorescence ; Flow cytometry ; Microbiological culture
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 19-27
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  • 16
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5315 | 1256 | 2011-09-29 15:06:22 | 5315 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Improvements in methods for the detection and enumeration of microbes in water, particularly the application of techniques of molecular biology, have highlighted shortcomings in the ”standard methods” for assessing water quality. Higher expectations from the consumer and increased publicity associated with pollution incidents can lead to an uncoupling of the cycle which links methodological development with standard-setting and legislation. The new methodology has also highlighted problems within the water cycle, related to the introduction, growth and metabolism of microbes. A greater understanding of the true diversity of the microbial community and the ability to transmit genetic information within aquatic systems ensures that the subject of this symposium and volume provides an ideal forum to discuss the problems encountered by both researcher and practitioner.
    Schlagwort(e): Biology ; Limnology ; Pollution ; Water quality ; Microbiology ; Microorganisms ; Hydrologic cycle ; Methodology ; Bacteria ; Bacterial counters ; Public health ; Microbial contamination ; Primary production ; Fungi ; Cryptosporidium
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 1-10
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  • 17
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5318 | 1256 | 2011-09-29 15:05:37 | 5318 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: It is widely recognised that conventional culture techniques may underestimate true viable bacterial numbers by several orders of magnitude. The basis of this discrepancy is that a culture in or on media of high nutrient concentration is highly selective (either through ”nutrient shock” or failure to provide vital co-factors) and decreases apparent diversity; thus it is unrepresentative of the natural community. In addition, the non-culturable but viable state (NCBV) is a strategy adopted by some bacteria as a response to environmental stress. The basis for the non-culturable state is that cells placed in conditions present in the environment cannot be recultured but can be shown to maintain their viability. Consequently, these cells would not be detected by standard water quality techniques that are based on culture. In the case of pathogens, it may explain outbreaks of disease in populations that have not come into contact with the pathogen. However, the NCBV state is difficult to attribute, due to the failure to distinguish between NCBV and non-viable cells. This article will describe experiences with the fish pathogen Aeromonas salmonicida subsp. salmonicida and the application of molecular techniques for its detection and physiological analysis.
    Schlagwort(e): Ecology ; Limnology ; Pollution ; Bacteria ; Bacterial diseases ; Detection ; Methodology ; Molecular biology ; Microbiological culture
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 28-34
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  • 18
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5316 | 1256 | 2011-09-29 15:05:33 | 5316 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: The advent of molecular biology has had a dramatic impact on all aspects of biology, not least applied microbial ecology. Microbiological testing of water has traditionally depended largely on culture techniques. Growing understanding that only a small proportion of microbial species are culturable, and that many microorganisms may attain a viable but non-culturable state, has promoted the development of novel approaches to monitoring pathogens in the environment. This has been paralleled by an increased awareness of the surprising genetic diversity of natural microbial populations. By targeting gene sequences that are specific for particular microorganisms, for example genes that encode diagnostic enzymes, or species-specific domains of conserved genes such as 16S ribosomal RNA coding sequences (rrn genes), the problems of culture can be avoided. Technical developments, notably in the area of in vitro amplification of DNA using the polymerase chain reaction (PCR), now permit routine detection and identification of specific microorganisms, even when present in very low numbers. Although the techniques of molecular biology have provided some very powerful tools for environmental microbiology, it should not be forgotten that these have their own drawbacks and biases in sampling. For example, molecular techniques are dependent on efficient lysis and recovery of nucleic acids from both vegetative forms and spores of microbial species that may differ radically when growing in the laboratory compared with the natural environment. Furthermore, PCR amplification can introduce its own bias depending on the nature of the oligonucleotide primers utilised. However, despite these potential caveats, it seems likely that a molecular biological approach, particularly with its potential for automation, will provide the mainstay of diagnostic technology for the foreseeable future.
    Schlagwort(e): Engineering ; Limnology ; Pollution ; Water quality ; Microbiology ; Microorganisms ; Methodology ; Molecular biology ; DNA ; Polymerase chain reaction ; Detection ; RNA ; Bacteria ; Bacterial diseases
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 11-18
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  • 19
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5323 | 1256 | 2011-09-29 15:05:12 | 5323 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: In drinking water distribution systems, three groups of living organisms are usually found in the biofilm and circulating water: heterotrophic bacteria, free-living protozoa, and macro-invertebrates. Indirect evidence suggests that protozoa grazing in distribution systems can partially eliminate biomass production and accidental microbiological pollution. This paper examines the biodiversit in drinking water distribution systems.
    Schlagwort(e): Biology ; Limnology ; Water supply ; Biodiversity ; Food chains ; Bacteria ; Invertebrate larvae ; Escherichia coli
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    Format: application/pdf
    Format: application/pdf
    Format: 63-70
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  • 20
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5322 | 1256 | 2011-09-29 15:05:32 | 5322 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: The direct measurement of in situ respiring bacteria using 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) shows that, especially for Gram-negative bacteria, large numbers of viable but non-culturable (VBNC) bacteria are present in finished water from a conventional water treatment plant, and the regrowth of bacteria along distribution networks can be seen rapidly by using this very sensitive technique. The level of bacterial inactivation with chlorine is much less important than has been previously supposed (based on experiments with non-injured laboratory strains of bacteria and classical culture techniques). Threshold values of VBNC bacteria leaving water treatment plants or regrowing along distribution systems have to be determined for better control of coliform regrowth and health- risks associated with the consumption of drinking water.
    Schlagwort(e): Biology ; Health ; Limnology ; Water supply ; Water treatment ; Bacteria ; Microbiological culture ; Bacterial counters ; Staining ; Growth curves ; France
    Repository-Name: AquaDocs
    Materialart: book_section , FALSE
    Format: application/pdf
    Format: application/pdf
    Format: 54-62
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  • 21
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5333 | 1256 | 2011-09-29 15:04:52 | 5333 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Interest in the identification and characterisation of cyanobacteria and dinoflagellates in aquatic environments is increasing rapidly due to the perceived roles of these organisms in primary production and nuisance aspects in terms of water treatment and public health. Techniques for the identification and quantification of these organisms currently are limited, and the application of molecular approaches provides fundamental taxonomic information and techniques of practical value. Antigenic properties of algal cells may be useful taxonomic markers. Immunodetection techniques utilise the specificity of the antibody/antigen association as a probe for recognising and distinguishing between microorganisms according to their cell- surface chemistry. Immunofluorescent detection of unicellular cyanobacteria and dinoflagellates has been studied with success in marine and freshwater ecosystems and a range of techniques and results are presented and discussed. The most recent advances in the study of planktonic algae have come with the application of continuous flow cytometric methods (CFC). Flow cytometry makes use of the autofluorescence properties of the algal cells, which alone can be used to demonstrate their presence and permit their quantification in natural water samples. When used in conjunction with immunolabelling techniques, the potential of CFC analysis is broadened to study the serological/strain composition of plankters in natural populations. Changes in algal strains represented within and between waters over periods of time are reported and discussed, along with the ecological issues thus raised.
    Schlagwort(e): Ecology ; Limnology ; Bacteria ; Methodology ; Algae ; Plankton ; Immunology ; Detection ; Toxicity tests ; Immunofluorescence ; Synechococcus ; Alexandrium tamarens ; Prorocentrum micans
    Repository-Name: AquaDocs
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    Format: application/pdf
    Format: application/pdf
    Format: 92-103
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  • 22
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5161 | 3949 | 2011-09-29 15:17:51 | 5161 | Freshwater Biological Association
    Publikationsdatum: 2021-07-08
    Beschreibung: Actinomycetes are a group of micro-organisms which lie, in classification, half-way between the fungi and the bacteria. They may be isolated from the plating of leaf washings, water samples and mud dilutions on to nutrient agar (with incorporated actidione to eliminate fungi). The predominant genus varied with the source of the sample. An attempt was also made to isolate the phages of some Actinomycetes. A search was made in the typical environments of the host, for the virus. In this way actinophage were also isolated; and shown to be capable of being transmitted from one host strain to another host strain within 1 sp or from one host to another within 1 genus; i.e. polyvalent.
    Schlagwort(e): Biology ; Ecology ; Environment ; Bacteria ; Fungi ; Microbiological culture ; Viruses ; Actinomycetes ; Annual report
    Repository-Name: AquaDocs
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  • 23
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5208 | 1256 | 2011-09-29 15:16:34 | 5208 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: This project investigated the production of nitrate (nitrification) by bacteria in lakes. The work was undertaken as nitrification is a key process in the nitrogen cycle and previous estimates of rates of nitrification were unreliable. When different methods were used to estimate rates of nitrification within sediment deposits different results were obtained. Investigation' of specific aspects of these methodologies has allowed some rationalization of these observations and also enabled comparisons of previously published data which, beforehand, was not possible. However, it was not clear which methods gave the most reliable rate estimates. Calculation of a nitrate budget for Grasmere lake indicated that the use of methods which involved the mixing of surface sediments (and therefore disrupted preformed nutrient gradients) overestimated the rate of nitrification. The study concludes that slight changes in the method used to prepare sediment slurries can result in large changes, in the measured nitrifying activity. This makes comparisons between studies, using different methods, extremely difficult. Methods to study sediment nitrification processes which do not disrupt preformed substrate gradients within the sediment provide the most reliable rate estimates.
    Schlagwort(e): Ecology ; Limnology ; Bacteria ; Nitrification ; Freshwater lakes ; Sediment samples ; Slurries ; Seasonal variations ; Methodology ; England ; Grasmere Lake
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 47
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  • 24
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5239 | 3949 | 2011-09-29 15:13:47 | 5239 | Freshwater Biological Association
    Publikationsdatum: 2021-06-24
    Beschreibung: This review discusses the processes involved in the decomposition of organic carbon derived initially from structural components of algae and other primary producers. It describes how groups of bacteria interact in time and space in a eutrophic lake. The relative importance of anaerobic and aerobic processes are discussed. The bulk of decomposition occurs within the sediment. The role of bacteria in the nitrogen cycle and the iron cycle, and in sulphate reduction and methanogenesis as the terminal metabolism of organic carbon are described.
    Schlagwort(e): Biology ; Chemistry ; Anaerobic bacteria ; Bacteria ; Biodegradation ; Carbon cycle ; Eutrophic lakes ; Fresh water ; Geochemical cycle ; Iron ; Manganese ; Nitrates ; Nitrogen cycle ; Organic carbon ; Oxygen consumption ; Partical size ; Sedimentation ; Sulphates ; Sulphur ; Annual report
    Repository-Name: AquaDocs
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    Format: application/pdf
    Format: application/pdf
    Format: 31-44
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  • 25
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5319 | 1256 | 2011-09-29 15:05:39 | 5319 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Tap water is not sterile; it contains organisms which grow in water distribution systems or inside taps and their fittings. The absence of known pathogenic bacteria is assured by the absence of the indicator organisms but concerns have been raised in the past few years that drinking water fulfilling the standards laid down in the EC Directive ECC 80/778 may still cause disease. These concerns have arisen from several sources: the fact that a cause has been identified in only half of all suspected waterborne outbreaks of disease; reports have suggested that heterotrophic bacteria possessing single pathogenic mechanisms such as haemolysin may cause disease; reports of heterotrophic organisms causing water contact diseases in hospitals. These concerns led to a reappraisal of the pathogenic potential of heteretrophic bacteria, by carrying out an extensive literature search and review commissioned by the UK Water Research Company. This research identified many papers showing an association between drinking water and heterotrophic bacteria but only very few reports of suspected waterborne disease associated with the heterotrophs. The organisms demonstrating potential to cause disease were species of Aeromonas and Yersinia, but typing of organisms identified in patients and isolated from the water revealed very few similarities. The potential of Aeromonas and Yersinia to cause waterborne disease is thought to be very low and the Communicable Disease Surveillance Centre database of laboratory infections due to these two genera of organisms was analysed to produce population-related incidences for each health region in England and Wales. Additionally a laboratory questionnaire revealed different levels of ascertainment of these two organisms in different laboratories of the Public Health Laboratory Service.
    Schlagwort(e): Ecology ; Health ; Limnology ; Public health ; Microbial contamination ; Water pollution treatment ; Bacteria ; Bacterial diseases ; Water supply ; Water policy ; Heterotrophic organisms
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    Format: application/pdf
    Format: 35-42
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  • 26
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/5047 | 1256 | 2011-09-29 15:28:19 | 5047 | Freshwater Biological Association
    Publikationsdatum: 2021-07-08
    Beschreibung: Laboratory research was done in order to study the feeding of larval Cricotopus silvestris F. in relation to characters of structure of oral apparatus. Results of the experiments are summarised and the oral apparatus morhologically described.
    Beschreibung: Translated from Russian into English
    Schlagwort(e): Biology ; Limnology ; Freshwater lakes ; Zooplankton ; Nutrition ; Carbon 14 ; Bacteria ; Algae ; Russia ; Asplanchna priodonta ; Asplanchna herricki
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    Materialart: monograph
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  • 27
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    Freshwater Biological Association | Windermere, UK
    In:  http://aquaticcommons.org/id/eprint/5064 | 1256 | 2011-09-29 15:30:02 | 5064 | Freshwater Biological Association
    Publikationsdatum: 2021-07-08
    Beschreibung: The morphology, increase and systematica of Sphaerotilus natans is studied and culture methods examined.
    Beschreibung: Translated from German into English
    Schlagwort(e): Biology ; Limnology ; Bacteria ; Bacteriology ; Identification ; Experimental culture ; Laboratory culture ; Methodology
    Repository-Name: AquaDocs
    Materialart: monograph
    Format: application/pdf
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  • 28
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5114 | 3949 | 2011-09-29 15:21:32 | 5114 | Freshwater Biological Association
    Publikationsdatum: 2021-07-08
    Beschreibung: An article looking at the numerical distribution of bacteria in lakes, the types most commonly present and the nitrogen-cycle, in Lake Windermere. The methodology is explained, including the sampling frequency and depths, and bacteria culturing techniques. Water bodies other than Lake Windermere were also sampled and these are detailed, including a water reservoir. A summary of the work into horizontal of bacteria is given, including a table showing the number of bacteria per millilitre at different distances from inflow into Windermere. A summary of the work into vertical distribution is also given, including two figures, one showing seasonal variation during 1938-9 in numbers of bacteria at different depths in Winderemere, and the other showing the relationship between the numbers of bacteria at 10 metres depth in Windermere and the rainfull during the previous 7 days. A summary of the types of bacteria found, as well as work on the nitrogen cycle in Esthwaite Water, Lake Windermere and Blelham Tarn are given.
    Schlagwort(e): Biology ; Chemistry ; Limnology ; Nitrogen cycle ; Bacteria ; Freshwater ecology ; Limnology ; Seasonal variations ; Water column ; Water reservoirs ; Annual reports ; England ; Lake District
    Repository-Name: AquaDocs
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    Format: application/pdf
    Format: application/pdf
    Format: 51-57
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  • 29
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5168 | 3949 | 2011-09-29 15:18:43 | 5168 | Freshwater Biological Association
    Publikationsdatum: 2021-07-08
    Beschreibung: Obtaining a reliable estimate of the bacterial population is one of the main problems facing the bacterial ecologist. The author discusses the various methods available and concludes that the observed variability in bacterial populations depends on the sampling interval used.
    Schlagwort(e): Biology ; Ecology ; Bacteria ; Biomass ; Population characteristics ; Population number ; Annual report
    Repository-Name: AquaDocs
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  • 30
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5184 | 3949 | 2011-09-29 15:17:22 | 5184 | Freshwater Biological Association
    Publikationsdatum: 2021-07-09
    Beschreibung: Three different methods for determining bacterial growth rate in rivers are described. Two of the methods are for bacteria in suspension: a recirculating experimental channel method and a radioactive tracer technique using super(35)SO sub(4). The third method is for bacteria attached to surfaces and specifically considers the surface of the common duckweed Lemna minor).
    Schlagwort(e): Biology ; Ecology ; Bacteria ; Growth ; Nannoplankton ; Rivers ; Lemna minor ; England ; Dorset ; River Frome ; Annual report
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  • 31
    Publikationsdatum: 2022-05-27
    Beschreibung: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gosselin, K. M., Nelson, R. K., Spivak, A. C., Sylva, S. P., Van Mooy, B. A. S., Aeppli, C., Sharpless, C. M., O’Neil, G. W., Arrington, E. C., Reddy, C. M., & Valentine, D. L. Production of two highly abundant 2-methyl-branched fatty acids by blooms of the globally significant marine cyanobacteria Trichodesmium erythraeum. ACS Omega, 6(35), (2021): 22803–22810, https://doi.org/10.1021/acsomega.1c03196.
    Beschreibung: The bloom-forming cyanobacteria Trichodesmium contribute up to 30% to the total fixed nitrogen in the global oceans and thereby drive substantial productivity. On an expedition in the Gulf of Mexico, we observed and sampled surface slicks, some of which included dense blooms of Trichodesmium erythraeum. These bloom samples contained abundant and atypical free fatty acids, identified here as 2-methyldecanoic acid and 2-methyldodecanoic acid. The high abundance and unusual branching pattern of these compounds suggest that they may play a specific role in this globally important organism.
    Beschreibung: This work was funded with grants from the National Science Foundation grants OCE-1333148, OCE-1333162, and OCE-1756254 and the Woods Hole Oceanographic Institution (IR&D). GCxGC analysis made possible by WHOI’s Investment in Science Fund.
    Schlagwort(e): Lipids ; Alkyls ; Bacteria ; Genetics ; Chromatography
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 32
    Publikationsdatum: 2022-01-31
    Beschreibung: Biodegradation mediated by indigenous microbial communities is the ultimate fate of the majority of oil hydrocarbon that enters the marine environment. The aim of this Research Topic is to highlight recent advances in our knowledge of the pathways and controls of microbially-catalyzed hydrocarbon degradation in marine ecosystems, with emphasis on the response of microbial communities to the Deepwater Horizon oil spill in the Gulf of Mexico. In this Research Topic, we encouraged original research and reviews on the ecology of hydrocarbon-degrading bacteria, the rates and mechanisms of biodegradation, and the bioremediation of discharged oil under situ as well as near in situ conditions.
    Schlagwort(e): GC1-1581 ; QR1-502 ; Q1-390 ; Biodegradation ; Metagenomics ; oil spill ; metatran ; bacterioplankton ; Bacteria ; Gulf of Mexico ; microbial communities ; hydrocarbon ; Deepwater Horizon
    Sprache: Englisch
    Format: image/jpeg
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  • 33
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    Frontiers Media SA
    Publikationsdatum: 2024-04-04
    Beschreibung: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
    Schlagwort(e): Bacteria ; Secretion ; Membrane ; Transport ; Protein Complex ; Pathogen ; thema EDItEUR::P Mathematics and Science::PD Science: general issues ; thema EDItEUR::M Medicine and Nursing::MK Medical specialties, branches of medicine::MKF Pathology::MKFM Medical microbiology and virology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
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  • 34
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    Frontiers Media SA
    Publikationsdatum: 2024-04-05
    Beschreibung: During spontaneous food/beverage fermentations, the microbiota associated with the raw material has a considerable importance: this microbial consortium evolves in reason of the nutrient content and of the physical, chemical, and biological determinants present in the food matrix, shaping fermentation dynamics with significant impacts on the ‘qualities’ of final productions. The selection from the indigenous micro-biodiversity of ‘virtuous’ ecotypes that coupled pro-technological and biotechnological aptitudes provide the basis for the formulation of ‘tailored’ starter cultures. In the fermenting food and beverage arena, the wine sector is generally characterized by the generation of a high added value. Together with a pronounced seasonality, this feature strongly contributes to the selection of a large group of starter cultures. In the last years, several studies contributed to describe the complexity of grapevine-associated microbiota using both culture-dependent and culture-independent approaches. The grape-associated microbial communities continuously change during the wine-making process, with different dominances that correspond to the main biotechnological steps that take place in wine. In order to simplify, following a time trend, four major dominances can be mainly considered: non-Saccharomyces, Saccharomyces, lactic acid bacteria (LAB), and spoilage microbes. The first two dominances come in succession during the alcoholic fermentation: the impact of Saccharomyces (that are responsible of key enological step of ethanol production) can be complemented/integrated by the contributions of compatible non-Saccharomyces strains. Lactic acid bacteria constitute the malolactic consortium responsible of malolactic fermentation, a microbial bioconversion often desired in wine (especially in red wine production). Finally, the fourth dominance, the undesired microbiota, represents a panel of microorganisms that, coupling spoilage potential to the resistance to the harsh conditions typical of wine environment, can cause important economic losses. In each of these four dominances a complex microbial biodiversity has been described. The studies on the enological significance of the micro-biodiversity connected with each of the four dominances highlighted the presence of a dichotomy: in each consortia there are species/strains that, in reason of their metabolisms, are able to improve wine ‘qualities’ (resource of interest in starter cultures design), and species/strains that with their metabolism are responsible of depreciation of wine. Articles describing new oenological impacts of yeasts and bacteria belonging to the four main categories above mentioned (non-Saccharomyces, Saccharomycetes, lactic acid bacteria, and spoilage microbes) are welcome. Moreover, in this Research Topic, we encourage mini-review submissions on topics of immediate interest in wine microbiology that link microbial biodiversity with positive/negative effects in wine.
    Schlagwort(e): QR1-502 ; Q1-390 ; Wine ; Yeasts ; Microbial Diversity ; Bacteria ; Safety ; alcoholic fermentation ; malolactic fermentation ; grapes ; quality ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
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  • 35
    Publikationsdatum: 2024-04-05
    Beschreibung: The most common quorum sensing (QS) system in Gram-negative bacteria occurs via N-acyl homoserine lactone (AHLs) signals. An archetypical system consists of a LuxI-family protein synthesizing the AHL signal which binds at quorum concentrations to the cognate LuxR-family transcription factors which then control gene expression by binding to specific sequences in target gene promoters. QS LuxR-family proteins are approximately 250 amino acids long and made up of two domains; at the N-terminus there is an autoinducer-binding domain whereas the C-terminus contains a DNA-binding helix-turn-helix (HTH) domain. QS LuxRs display surprisingly low similarities (18-25%) even if they respond to structurally similar AHLs. 95% of LuxRs share 9 highly conserved amino acid residues; six of these are hydrophobic or aromatic and form the cavity of the AHL-binding domain and the remaining three are in the HTH domain. With only very few exceptions, the luxI/R cognate genes of AHL QS systems are located adjacent to each other. The sequencing of many bacterial genomes has revealed that many proteobacteria also possess LuxRs that do not have a cognate LuxI protein associated with them. These LuxRs have been called orphans and more recently solos. LuxR solos are widespread in proteobacterial species that possess a canonical complete AHL QS system as well as in species that do not. In many cases more than one LuxR solo is present in a bacterial genome. Scientists are beginning to investigate these solos. Are solos responding to AHL signals? If present in a bacterium which possesses a canonical AHL QS system are solos an integral part of the regulatory circuit? Are LuxR solos eavesdropping on AHLs produced by neighboring bacteria? Have they evolved to respond to different signals instead of AHLs, and are these signals endogenously produced or exogenously provided? Are they involved in interkingdom signaling by responding to eukaryotic signals? Recent studies have revealed that LuxR solos are involved in several mechanisms of cell-cell communication in bacteria implicating them in bacterial intraspecies and interspecies communication as well as in interkingdom signaling by responding to molecules produced by eukaryotes. LuxR solos are likely to become major players in signaling since they are widespread among proteobacterial genomes and because initial studies highlight their different roles in bacterial communication. This Research Topic allows scientists studying or interested in LuxR solos to report their data and/or express their hypotheses and thoughts on this important and currently understudied family of signaling proteins.
    Schlagwort(e): QH301-705.5 ; Q1-390 ; LuxR solos ; Quorum Sensing ; signaling ; AHL ; Bacteria ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
    Sprache: Englisch
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  • 36
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    Frontiers Media SA
    Publikationsdatum: 2024-04-05
    Beschreibung: Proteins suffer many conformational changes and interactions through their life, from their synthesis at ribosomes to their controlled degradation. Only folded and soluble proteins are functional. Thus, protein folding and solubility are controlled genetically, transcriptionally, and at the protein sequence level. In addition, a well-conserved cellular machinery assists the folding of polypeptides to avoid misfolding and ensure the attainment of soluble and functional structures. When these redundant protective strategies are overcome, misfolded proteins are recruited into aggregates. Recombinant protein production is an essential tool for the biotechnology industry and also supports expanding areas of basic and biomedical research, including structural genomics and proteomics. Although bacteria still represent a convenient production system, many recombinant polypeptides produced in prokaryotic hosts undergo irregular or incomplete folding processes that usually result in their accumulation as insoluble aggregates, narrowing thus the spectrum of protein-based drugs that are available in the biotechnology market. In fact, the solubility of bacterially produced proteins is of major concern in production processes, and many orthogonal strategies have been exploited to try to increase soluble protein yields. Importantly, contrary to the usual assumption that the bacterial aggregates formed during protein production are totally inactive, the presence of a fraction of molecules in a native-like structure in these assemblies endorse them with a certain degree of biological activity, a property that is allowing the use of bacteria as factories to produce new functional materials and catalysts. The protein embedded in intracellular bacterial deposits might display different conformations, but they are usually enriched in beta-sheet-rich assemblies resembling the amyloid fibrils characteristic of several human neurodegenerative diseases. This makes bacterial cells simple, but biologically relevant model systems to address the mechanisms behind amyloid formation and the cellular impact of protein aggregates. Interestingly, bacteria also exploit the structural principles behind amyloid formation for functional purposes such as adhesion or cytotoxicity. In the present research topic we collect papers addressing all the issues mentioned above from both the experimental and computational point of view.
    Schlagwort(e): QR1-502 ; Q1-390 ; protein aggregation ; bacterial chaperones ; Bacteria ; Functional amyloids ; protein expression ; Protein Folding ; Prion-like proteins ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
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  • 37
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    Frontiers Media SA
    Publikationsdatum: 2024-04-05
    Beschreibung: According to the World Health Organization (WHO), in 2012 infectious diseases and related conditions account for more than 70% of premature deaths across 22 African countries and estimated 450 000 people worldwide developed multi-drug resistant tuberculosis. This alarming situation, of great public health concern, calls for the urgent development of novel and efficient responding strategies. The employment of important research platforms, such as genomics and proteomics, has contributed significant insight into the mechanisms underlying microbial infection and microbe-host interaction. In this Frontiers Research Topic, we aim to produce a timely and pertinent discussion regarding the current status of “Proteomics of microbial Human pathogens” and the role of proteomics in combating the challenges posed by microbial infection and indeed acquired anti-microbial resistance. As the field of proteomics progressed from 2-DE gel based approaches to modern LC-MS/MS based workflows, remarkable advances have been reported in terms of data quantity and quality. Given the immediate and enormous advantages that high resolution and accurate mass spectrometers have brought to the field, proteomics has now evolved into a robust platform capable of generating large amounts of comprehensive data comparable to that reported previously in genomics studies. For example, detection of the complete yeast proteome has been reported and other small proteomes, such as those of bacteria, are within reach. Mass spectrometry-based proteomics has become an essential tool for biologists and biochemists, and is now considered by many as an essential component of modern structural biology. Additionally, the introduction of high-resolution mass spectrometers has driven the development of various different strategies aimed at accurate quantification of absolute and relative amount of protein(s) of interest. Emerging targeted mass spectrometry methodologies such as; Selected Reaction Monitoring (SRM), Parallel Reaction Monitoring (PRM) and SWATH, are perhaps the latest breakthrough within the proteomics community. Indeed, through a label free approach, targeted mass spectrometry offers an unequalled capability to characterize and quantify a specific set of proteins reproducibility, in any biological sample. Usefully, Aebersold and colleagues have recently generated and validated a number of assays to quantify 97% of the 4,012 annotated Mycobacterium tuberculosis (Mtb) proteins by SRM. As such, the Mtb Proteome library represents a valuable experimental resource that will undoubtedly bring new insight to the complex life cycle of Mtb. Finally, as reviewed recently in Frontiers Research Topic, mass spectrometry-based proteomics has had a tremendous impact on our current understanding of post translational modification (PTM) in bacteria including the key role of PTMs during interaction of pathogenic bacteria and host interactions. We believe that our understanding of microbial Human pathogens has benefited enormously from both 2-DE gel and modern LC-MS/MS based proteomics. It is our wish to produce an integrated discussion surrounding this topic to highlight the existing synergy between these research fields. We envisage this Research Topic as a window to expert opinions and perspectives on the realistic practicalities of proteomics as an important tool to address healthcare problems caused by microbial pathogens.
    Schlagwort(e): QR1-502 ; Q1-390 ; Mass Spectrometry ; Proteomics ; infectious diseases ; Bacteria ; pathogen ; Microbes ; Protein posttranslational modifications ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
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  • 38
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    Frontiers Media SA
    Publikationsdatum: 2024-04-04
    Beschreibung: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
    Schlagwort(e): Alzheimer's disease ; Amyloid ; Bacteria ; Infection ; Spirochetes ; Dementia ; Pathogens ; Biofilm ; Senile plaque ; Beta amyloid ; Tau ; Inflammation ; Bacterial amyloid ; HSV1 ; Virus ; thema EDItEUR::P Mathematics and Science::PD Science: general issues ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAN Neurosciences
    Sprache: Englisch
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  • 39
    Publikationsdatum: 2024-04-05
    Beschreibung: This eBook presents all 10 articles published under the Frontiers Research Topic "Evolutionary Feedbacks Between Population Biology and Genome Architecture", edited by Scott V. Edwards and Tariq Ezaz. With the rise of rapid genome sequencing across the Tree of Life, challenges arise in understanding the major evolutionary forces influencing the structure of microbial and eukaryotic genomes, in particular the prevalence of natural selection versus genetic drift in shaping those genomes. Additional complexities in understanding genome architecture arise with the increasing incidence of interspecific hybridization as a force for shaping genotypes and phenotypes. A key paradigm shift facilitating a more nuanced interpretation of genomes came with the rise of the nearly neutral theory in the 1970s, followed by a greater appreciation for the contribution of nonadaptive forces such as genetic drift to genome structure in the 1990s and 2000s. The articles published in this eBook grapple with these issues and provide an update as to the ways in which modern population genetics and genome informatics deepen our understanding of the subtle interplay between these myriad forces. From intraspecific to macroevolutionary studies, population biology and population genetics are now major tools for understanding the broad landscape of how genomes evolve across the Tree of Life. This volume is a celebration across diverse taxa of the contributions of population genetics thinking to genome studies. We hope it spurs additional research and clarity in the ongoing search for rules governing the evolution of genomes.
    Schlagwort(e): QK1-989 ; Q1-390 ; Genetic Drift ; intron ; natural selection ; gene ; plant ; vertebrate ; Bacteria ; Sex Chromosomes ; Genome ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences
    Sprache: Englisch
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  • 40
    Publikationsdatum: 2023-12-20
    Beschreibung: Periodontitis is an infection-induced inflammatory disease of the tooth supporting tissues. Treatment of periodontal diseases and regeneration of the effected tissues can be possible only in the early diagnosis of the disease. If left undiagnosed or untreated, periodontitis leads to irreversible soft and hard tissue destruction and finally to tooth loss. Saliva is known to contain inflammatory mediators, host tissue and cell degradation products as well as microbial metabolites and enzymes, reflecting the health status of the oral cavity. In this topic, in collaboration with the well-known scientists working on the field of salivary diagnostics, we demonstrate evidence on monitoring periodontitis by salivary analysis.
    Schlagwort(e): Q1-390 ; RC109-216 ; host response ; Chair-side ; diagnostics ; Periodontal disease ; Salivary ; Bacteria ; bic Book Industry Communication::G Reference, information & interdisciplinary subjects::GP Research & information: general
    Sprache: Englisch
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  • 41
    Publikationsdatum: 2023-12-21
    Beschreibung: In recent years there has been a substantial increase in the number of diseases with the inflammatory component such as such as allergy, asthma, rheumatoid arthritis, inflammatory bowl disease (IBD, which includes ulcerative colitis and Crohn's disease), chronic sinusitis, and many other conditions. The majority of these diseases are multifactorial, with the contribution of genetic and environmental factors. Among the latter, the role of certain microorganisms and viruses in triggering or sustaining the inflammatory process is most controversial. In rheumatoid arthritis, for example, the following bacteria and viruses have been implicated in triggering the disease: Mycoplasma spp., Proteus mirabilis, Escherichia coli, Staphylococcus spp., Bordetella spp., Acinetobacter spp., the parvoviruses, Epstein-Barr virus, and retroviruses. The list of putative microbial triggers of rheumatoid arthritis is still growing, and it becomes essentially impossible to make a causation link between certain infectious agents and the disease. In the light of these disappointing results there are calls for even larger studies with the use of more advanced and large-scale technologies. The primary function of the immune system is the maintenance of body homeostasis and protection against any threats to it via several lines of elaborate and complex immune defense. Given even higher complexity that involves the microbiota and the corresponding host-microbe interaction, the conditions for this equilibrium become even more challenging. In the absence of a defined pathogen, for example, the spectrum of microorganisms involved in triggering inappropriate immune responses may include polymicrobial communities or the cumulative effect of several microbial/viral factors. Under the normal circumstances there is a fine-tuned balance between commensal microbiota and the host’s immune responses. However, when this balance is compromised, for example in IBD, a massive immune response is launched against commensal microbiota resulting in chronic inflammation. Besides the microbial/viral factors, the balance of the immune system can be compromised by other causes. Given, for example, the close and inclusive interaction of the immune, nervous and endocrine systems, the list of these provoking factors can expand even more. For instance, it has been demonstrated that even mild sleep deprivation may increase the production of interleukin-6 and C-reactive protein. Understanding the complex role of microbial and environmental factors in inflammatory and autoimmune diseases, therefore, is the main subject of this topic.
    Schlagwort(e): R5-920 ; RC581-607 ; QR1-502 ; Q1-390 ; environment ; Autoimmune ecology ; Silica exposure ; Rheumatoid arthritis ; Viruses ; Bacteria ; bic Book Industry Communication::M Medicine
    Sprache: Englisch
    Format: image/jpeg
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  • 42
    Publikationsdatum: 2024-04-05
    Beschreibung: Post-translational modifications (PTMs) are widely employed by all living organisms to control the enzymatic activity, localization or stability of proteins on a much shorter time scale than the transcriptional control. In eukarya, global analyses consistently reveal that proteins are very extensively phosphorylated, acetylated and ubiquitylated. Glycosylation and methylation are also very common, and myriad other PTMs, most with a proven regulatory potential, are being discovered continuously. The emergent picture is that PTM sites on a single protein are not independent; modification of one residue often affects (positively or negatively) modification of other sites on the same protein. The best example of this complex behavior is the histone “bar-code” with very extensive cross-talk between phosphorylation, acetylation and methylation sites. Traditionally it was believed that large networks of PTMs exist only in complex eukaryal cells, which exploit them for coordination and fine-tuning of various cellular functions. PTMs have also been detected in bacteria, but the early examples focused on a few important regulatory events, based mainly on protein phosphorylation. The global importance (and abundance) of PTMs in bacterial physiology was systematically underestimated. In recent years, global studies have reported large datasets of phosphorylated, acetylated and glycosylated proteins in bacteria. Other modifications of bacterial proteins have been recently described: pupylation, methylation, sirtuin acetylation, lipidation, carboxylation and bacillithiolation. As the landscape of PTMs in bacterial cells is rapidly expanding, primarily due to advances of detection methods in mass spectrometry, our research field is adapting to comprehend the potential impact of these modifications on the cellular physiology. The field of protein phosphorylation, especially of the Ser/Thr/Tyr type, has been profoundly transformed. We have become aware that bacterial kinases phosphorylate many protein substrates and thus constitute regulatory nodes with potential for signal integration. They also engage in cross-talk and eukaryal-like mutual activation cascades. The regulatory potential of protein acetylation and glycosylation in bacteria is also rapidly emerging, and the cross-talk between acetylation and phosphorylation has been documented. This topic deals with the complexity of the PTM landscape in bacteria, and focus in particular on the physiological roles that PTMs play and methods to study them. The topic is associated to the 1st International Conference on Post-Translational Modifications in Bacteria (September 9-10, 2014, Göttingen, Germany).
    Schlagwort(e): QR1-502 ; Q1-390 ; Infection ; Phosphorylation ; Hydroxylation ; Protein Kinases ; S-thiolation ; Proteomics ; Bacteria ; Dehydration ; N-glycosylation ; antimicrobial peptides ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
    Format: image/jpeg
    Standort Signatur Erwartet Verfügbarkeit
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  • 43
    facet.materialart.
    Unbekannt
    Frontiers Media SA
    Publikationsdatum: 2024-04-05
    Beschreibung: DNA replication, a central event for cell proliferation, is the basis of biological inheritance. Complete and accurate DNA replication is integral to the maintenance of the genetic integrity of organisms. In all three domains of life, DNA replication begins at replication origins. In bacteria, replication typically initiates from a single replication origin (oriC), which contains several DnaA boxes and the AT-rich DNA unwinding element (DUE). In eukaryotic genomes, replication initiates from significantly more replication origins, activated simultaneously at a specific time. For eukaryotic organisms, replication origins are best characterized in the unicellular eukaryote budding yeast Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. The budding yeast origins contain an essential sequence element called the ARS (autonomously replicating sequence), while the fission yeast origins consist of AT-rich sequences. Within the archaeal domain, the multiple replication origins have been identified by a predict-and-verify approach in the hyperthermophilic archaeon Sulfolobus. The basic structure of replication origins is conserved among archaea, typically including an AT-rich unwinding region flanked by several short repetitive DNA sequences, known as origin recognition boxes (ORBs). It appears that archaea have a simplified version of the eukaryotic replication apparatus, which has led to considerable interest in the archaeal machinery as a model of that in eukaryotes. The research on replication origins is important not only in providing insights into the structure and function of the replication origins but also in understanding the regulatory mechanisms of the initiation step in DNA replication. Therefore, intensive studies have been carried out in the last two decades. The pioneer work to identify bacterial oriCs in silico is the GC-skew analysis. Later, a method of cumulative GC skew without sliding windows was proposed to give better resolution. Meanwhile, an oligomer-skew method was also proposed to predict oriC regions in bacterial genomes. As a unique representation of a DNA sequence, the Z-curve method has been proved to be an accurate and effective approach to predict bacterial and archaeal replication origins. Budding yeast origins have been predicted by Oriscan using similarity to the characterized ones, while the fission yeast origins have been identified initially from AT content calculation. In comparison with the in silico analysis, the experimental methods are time-consuming and labor-intensive, but convincing and reliable. To identify microbial replication origins in vivo or in vitro, a number of experimental methods have been used including construction of replicative oriC plasmids, microarray-based or high-throughput sequencing-based marker frequency analysis, two-dimensional gel electrophoresis analysis and replication initiation point mapping (RIP mapping). The recent genome-wide approaches to identify and characterize replication origin locations have boosted the number of mapped yeast replication origins. In addition, the availability of increasing complete microbial genomes and emerging approaches has created challenges and opportunities for identification of their replication origins in silico, as well as in vivo and in vitro. The Frontiers in Microbiology Research Topic on DNA replication origins in microbial genomes is devoted to address the issues mentioned above, and aims to provide a comprehensive overview of current research in this field.
    Schlagwort(e): QR1-502 ; Q1-390 ; orisome ; Replication Origin ; Cell-cycle ; Archaea ; origin recognition complex (ORC) ; Bacteria ; DNA Replication ; Replication regulation ; yeast ; Regulatory proteins ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Sprache: Englisch
    Format: image/jpeg
    Standort Signatur Erwartet Verfügbarkeit
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  • 44
    facet.materialart.
    Unbekannt
    Frontiers Media SA
    Publikationsdatum: 2023-12-21
    Beschreibung: The Nod-like receptor (NLR) family of proteins are evolutionary conserved molecules that in plants and mammals have been implicated in innate immune sensing of microbes and infection-associated physiological changes, contributing to immune protection of the challenged host organism through the instruction of inflammatory responses, antimicrobial defense and adaptive immunity. Recent data however suggests that the biological roles of NLR go beyond the function of classical pattern recognition molecules (PRM) as they have been implicated in essential cellular processes including autophagy, apoptosis, modification of signal transduction and gene transcription as well as reproductive biology. In this research topic, we aim to provide a comprehensive state-of the art overview of the emerging functions of NLR in plant and mammalian immunity, cell biology and reproductive biology. Potential topics may include, but are not limited to the following areas: • Functions of NLRs as PRMs in infection • Cross-talk of NLRs with other PRMs • Signal transduction pathways of NLRs • New functions of NLRs other than pattern recognition • Structural aspects of NLR activation • Mechanisms of NLRs in cell biological processes • Aspects of NLRs in reproductive biology • Functions of NLRs in plant immune responses
    Schlagwort(e): R5-920 ; RC581-607 ; Adaptive Immunity ; PAMP ; pathogens ; MAMP ; innate immunity ; Bacteria ; Sensing ; virus ; LRR ; DAMP ; bic Book Industry Communication::M Medicine
    Sprache: Englisch
    Format: image/jpeg
    Standort Signatur Erwartet Verfügbarkeit
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  • 45
    facet.materialart.
    Unbekannt
    Frontiers Media SA
    Publikationsdatum: 2024-04-11
    Beschreibung: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact
    Schlagwort(e): Airborne ; Andean highland ; Bacteria ; fish ; hydrothermal vent ; hot spring ; microorganisms ; Plants ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TN Civil engineering, surveying and building ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering::TCB Biotechnology
    Sprache: Englisch
    Format: image/jpeg
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  • 46
    Publikationsdatum: 2017-04-04
    Beschreibung: Mt. Vesuvius (southern Italy) is one of the most hazardous volcanoes in the world. Its activity is currently characterized by moderate seismicity, with hypocenters located beneath the crater zone with depth rarely exceeding 5 km and magnitudes generally less than 3. The current configu- ration of the seismic monitoring network of Mt. Vesuvius consists of 18 seismic stations and 7 infrasound microphones. During the period 2006- 2010 a seismic array with 48 channels was also operative. The station distribution provides appropriate coverage of the area around the volcanic edifice. The current development of the network and its geometry, under conditions of low seismic noise, allows locating seismic events with M〈1. Remote instruments continuously transmit data to the main acquisition center in Naples. Data transmission is realized using different technological solutions based on UHF, Wi-Fi radio links, and TCP/IP client-server applications. Data are collected in the monitoring center of the Osservatorio Vesuviano (Italian National Institute of Geophysics and Volcanology, Naples section), which is equipped with systems for displaying and analyzing signals, using both real-time automatic and manual procedures. 24-hour surveillance allows to immediately communicate any significant anomaly to the Civil Protection authorities.
    Beschreibung: Published
    Beschreibung: S0450
    Beschreibung: 5V. Sorveglianza vulcanica ed emergenze
    Beschreibung: 1IT. Reti di monitoraggio e Osservazioni
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Vesuvius ; seismic network ; volcano monitoring ; network performance ; 04. Solid Earth::04.06. Seismology::04.06.06. Surveys, measurements, and monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 47
    Publikationsdatum: 2017-04-04
    Beschreibung: The continuous measurement of ground deformations is an important contribution to the monitoring of volcanic areas. When the volcano is totally or partially submerged, the traditional geodetic methods cannot be applied and the measures of seafloor deformation are extremely difficult and expensive. This paper describes the installation of a continuous GPS station on an elastic beacon. The measurements were conducted in the Campi Flegrei Caldera (Gulf of Pozzuoli, Naples), whose vertical displacements are related to the bradyseismic phenomenon. Experimental observations show that it’s possible to monitor vertical displacement of seafloor with a resolution of a few centimeters, also taking into account for measurement errors (due to weather and sea conditions acting on the elastic beacon). This non expensive technique is relevant at Campi Flegrei area, because it extends the ground deformation monitoring at sea, contributing to a better modeling of the deformation field.
    Beschreibung: Published
    Beschreibung: 1-18
    Beschreibung: 1.3. TTC - Sorveglianza geodetica delle aree vulcaniche attive
    Beschreibung: N/A or not JCR
    Beschreibung: open
    Schlagwort(e): GPS ; Campi Flegrei caldera ; monitoraggio ; deformazioni verticali fondale marino ; 04. Solid Earth::04.02. Exploration geophysics::04.02.07. Instruments and techniques ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 48
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: This is the first volume of an international scientific journal that is dedicated to issues of geoethics and geological culture. Its goal is to inform the Italian and international scientific communities about what emerged at the GeoItalia 2011 conference, attended by not only Italian geoscientists. At this conference, the geoscientists questioned their role in society and the responsibilities that they have to assume as scholars of the planet Earth and experts of the territory. They highlighted the need for rediscovery of the cultural values of geology as a science that can contribute to the construction of correct social knowledge, and the need to be aware that geoethics cannot exist without a real awareness among geoscientists of the cultural value of the Earth sciences.
    Beschreibung: Published
    Beschreibung: 331
    Beschreibung: 5.9. Formazione e informazione
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geoethics ; Geoetica ; Geological Culture ; Earth Sciences ; Philosophy ; Education ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 49
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: Prof. Giulio Giorello is amongst the most prominent philosophers of science in Italy and in the world. He is currently Professor of the Philosophy of Science at the University of Milan, Director of the Series ‘Science and Ideas’ (Raffaele Cortina Books Editor), and Literary Journalist of the cultural pages of the Corriere della Sera, one of the most important of the Italian newspapers. In this keynote presentation, in interview form, he talks about the value that the Earth sciences have had through history, framing this group of disciplines in ethical and epistemological terms, and highlighting some important elements that have to be considered in geological activities.
    Beschreibung: Published
    Beschreibung: 343-346
    Beschreibung: 5.9. Formazione e informazione
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geoethics ; Geological Culture ; Geoetica ; Giulio Giorello ; Earth Sciences ; Interview ; Philosophy ; Epistemology ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 50
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: The international debate in the field of geoethics focuses on some of the most important environmental emergencies, while highlighting the great responsibilities of geoscientists, whatever field they work in, and the important social, cultural and economic repercussions that their choices can have on society. The GeoItalia 2009 and 2011 conferences that were held in Rimini and Turin, respectively, and were organized by the Italian Federation of Earth Science, were two important moments for the promotion of geoethics in Italy. They were devoted to the highlighting of how, and with what tools and contents, can the geosciences contribute to the cultural renewal of society. They also covered the active roles of geoscientists in the dissemination of scientific information, contributing in this way to the correct construction of social knowledge. Geology is culture, and as such it can help to dispel misconceptions and cultural stereotypes that concern natural phenomena, disasters, resources, and land management. Geological culture consists of methods, goals, values, history, ways of thinking about nature, and specific sensitivity for approaching problems and their solutions. So geology has to fix referenced values, as indispensable prerequisites for geoethics. Together, geological culture and geoethics can strengthen the bond that joins people to their territory, and can help to find solutions and answers to some important challenges in the coming years regarding natural risks, resources, and climate change. Starting from these considerations, we stress the importance of establishing an ethical criterion for Earth scientists, to focus attention on the issue of the responsibility of geoscientists, and the need to more clearly define their scientific identity and the value of their specificities.
    Beschreibung: Published
    Beschreibung: 335-341
    Beschreibung: 5.9. Formazione e informazione
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geoethics ; Education ; History of science ; Public issues ; General (Philosophy of Earth sciences) ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 51
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: Franco Ferrarotti, Professor emeritus at ‘La Sapienza’ University of Rome; since winning the first Chair in this discipline in Italy in 1961, he has been considered the Father of Italian Sociology. An independent Member of Italian Parliament in the third government (1958-1963), a member of the New York Academy of Sciences, and a ‘visiting Professor’ at many universities in Europe, North America, Russia, Japan and Latin America. Franco Ferrarotti has taught and still teaches in Europe and America, and he has received many awards throughout his career. In this interview, he talks about the social aspects and consequences of Earth sciences studies.
    Beschreibung: Published
    Beschreibung: 347-348
    Beschreibung: 5.9. Formazione e informazione
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geoethics ; Geological Culture ; Geoetica ; Social aspects ; Geologists activity ; Scientific information ; Society ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 52
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: We argue here that the introduction of an ethical code of conduct that follows the example of the Hippocratic Oath of physicians will help geologists to acquire binding awareness of their professional and social responsibilities. The ethical behavior and obligations of modern geologists involve, but are not limited to, the following issues: correct land/ environment use and management; respect of truth and science; and protection of the Earth systems, on both the local and global scales, and therefore, of our well-being. We believe that for geoligists, the explicit acceptance of an ethical code will help to promote: (i) an awareness of their social role, expertise and sense of belonging to a professional community; (ii) an understanding of the expectations of citizens and society; and (iii) cultural growth, with better use of research and implementation of scientific and professional skills. All this should enhance the public recognition of the social mission of geologists, which is essential for the well-being of society. Therefore, we suggest that like in the majority of medical schools, ethical training should be a part of the university curriculum for students in geology.
    Beschreibung: Published
    Beschreibung: 365-369
    Beschreibung: 5.9. Formazione e informazione
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geoethics ; Geological Culture ; Geoetica ; Hippocratic Oath ; Geologists ; Social responsibility ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 53
    Publikationsdatum: 2020-02-24
    Beschreibung: This work shows the experience acquired by the INGV-Osservatorio Vesuviano GPS Team to study the displacement field at Ischia island. After the last GPS survey, carried out in June 2010, we decided to reorganize and to reprocess the GPS data. The results were integrated with those of the three permanent GPS stations operating on the island. Data quality and repeatability have been evaluated. In order to define the GPS velocity field, we combined multi-year solutions in the period from 1998 to 2010.We defined a local reference system and analyzed the time series for a realistic error estimate. After a description of recent volcanic history and dynamics of Ischia, we describe the data-set, data processing strategy, and finally, some considerations on the achieved results are exposed.
    Beschreibung: Published
    Beschreibung: 1-61
    Beschreibung: 1.3. TTC - Sorveglianza geodetica delle aree vulcaniche attive
    Beschreibung: N/A or not JCR
    Beschreibung: open
    Schlagwort(e): GPS, Ischia Island, velocity field ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 54
    facet.materialart.
    Unbekannt
    Istituto Nazionale di Geofisica e Vulcanologia
    Publikationsdatum: 2017-04-04
    Beschreibung: The Matese carbonatic massive occupies the northernmost part of the campanian Apennine while Sannio mounts, located to the East of massive, consists primarily of quaternary deposits and represent the area of Apennine chain degrading to East towards the Bradanica foredeep. The area was affected in historical time by several destructive earthquakes. The first ground deformation studies in this area started from 1990-2000 with the definition of geodetic networks, covering all or part of the massive Matese, with the aim of evaluating seismogenic sources responsible for the seismicity of the area. In 2002, a careful inspection of the existing GPS benchmarks was carried out; those which had a good state of preservation and a good level of reliability were included into a new geodetic Matese network, consisting of 38 3D benchmarks. Several surveys were conducted in 2000, 2002 and 2004,with the aim of defining the strain field, defined by plano-altimetric components. In 2005, an intensive work of gathering and validating available data started, integrating data collected by previous surveys with those collected during the new survey carried out in 2006. This work describes in detail the various stages of implementing the final network S.A.G.NET, whose geometry was also bound to the distribution of the known seismogenic sources present in the area. We also show the first results obtained from data collected from2000 to 2006 and the resulting kinematic model for this area.
    Beschreibung: Published
    Beschreibung: 3.2. Tettonica attiva
    Beschreibung: N/A or not JCR
    Beschreibung: open
    Schlagwort(e): GPS, Matese, SAGNet ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 55
    Publikationsdatum: 2017-04-04
    Beschreibung: Long time-series of chemical and isotopic compositions of Vesuvius fumaroles were acquired in the framework of the volcanic surveillance in the 1998-2010 period. These allow the identification of processes that occur at shallow levels in the hydrothermal system, and variations that are induced by deep changes in volcanic activity. Partial condensation processes of fumarolic water under near-discharge conditions can explain the annual 18O and deuterium variabilities that are observed at Vesuvius fumaroles. Significant variations in the chemical compositions of fumaroles occurred over the 1999-2002 period, which accompanied the seismic crisis of autumn 1999, when Vesuvius was affected by the most energetic earthquakes of its last quiescence period. A continuous increase in the relative concentrations of CO2 and He and a general decrease in the CH4 concentrations are interpreted as the consequence of an increment in the relative amount of magmatic fluids in the hydrothermal system. Gas equilibria support this hypothesis, showing a PCO2 peak that culminated in 2002, increasing from values of ~40 bar in 1998 to ~55-60 bar in 2001- 2002. We propose that the seismic crisis of 1999 marked the arrival of the magmatic fluids into the hydrothermal system, which caused the observed geochemical variations that started in 1999 and culminated in 2002.
    Beschreibung: Published
    Beschreibung: 137-149
    Beschreibung: 1.2. TTC - Sorveglianza geochimica delle aree vulcaniche attive
    Beschreibung: 2.4. TTC - Laboratori di geochimica dei fluidi
    Beschreibung: 4.5. Studi sul degassamento naturale e sui gas petroliferi
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Vesuvius ; Hydrothermal system ; Geochemical monitoring ; Stable isotopes. ; 03. Hydrosphere::03.02. Hydrology::03.02.04. Measurements and monitoring ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 56
    Publikationsdatum: 2017-04-04
    Beschreibung: The individuation of areas that are more likely to be affected by new events in volcanic regions is of fundamental relevance for the mitigation of the possible consequences, both in terms of loss of human life and material properties. Here, we describe a methodology for defining flexible high-detail lava-hazard maps and a technique for the validation of the results obtained. The methodology relies on: (i) an accurate analysis of the past behavior of the volcano; (ii) a new version of the SCIARA model for lava-flow simulation (based on the macroscopic cellular automata paradigm); and (iii) high-performance parallel computing for increasing computational efficiency. The new release of the SCIARA model introduces a Bingham-like rheology as part of the minimization algorithm of the differences for the determination of outflows from a generic cell, and an improved approach to lava cooling. The method is here applied to Mount Etna, the most active volcano in Europe, and applications to landuse planning and hazard mitigation are presented.
    Beschreibung: This study was sponsored by the Italian National Civil Defence Department and the Istituto Nazionale di Geofisica e Vulcanologia (INGV), project V3_6/09 "V3_6 – Etna".
    Beschreibung: Published
    Beschreibung: 568-578
    Beschreibung: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Beschreibung: 3.5. Geologia e storia dei vulcani ed evoluzione dei magmi
    Beschreibung: 3.6. Fisica del vulcanismo
    Beschreibung: 4.3. TTC - Scenari di pericolosità vulcanica
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): volcanic risk ; cellular automata ; Algorithms and implementation ; Statistical analysis ; Data processing ; 04. Solid Earth::04.01. Earth Interior::04.01.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.01. Computational geophysics::05.01.99. General or miscellaneous ; 05. General::05.01. Computational geophysics::05.01.01. Data processing ; 05. General::05.01. Computational geophysics::05.01.02. Cellular automata, fuzzy logic, genetic alghoritms, neural networks ; 05. General::05.01. Computational geophysics::05.01.04. Statistical analysis ; 05. General::05.02. Data dissemination::05.02.99. General or miscellaneous ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions ; 05. General::05.08. Risk::05.08.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 57
    Publikationsdatum: 2017-04-04
    Beschreibung: Since 2004, a continuous Global Positioning System (GPS) network has been operated by the Istituto Nazionale di Geofisica e Vulcanologia (INGV) to investigate active tectonic processes in Italy and the surrounding regions, which are still largely debated. This important infrastructure is known as Rete Integrata Nazionale GPS (RING) network, and it consists of about 130 stations that are deployed all over Italy. The development and realization of a stable GPS monumentation, its integration with seismological instruments, and the choice of both satellite and internet data transmission, make this network one of the most innovative and reliable CGPS networks in the world. The technologically advanced development of the RING network has been accompanied by the development of different data processing strategies, which are mainly dependent on the use of different GPS analysis software. The different software-related solutions are here compared at different scales for this large network, and the consistency is evaluated and quantified within an RMS value of 0.3 mm/yr.
    Beschreibung: Published
    Beschreibung: 39-54
    Beschreibung: 1.9. Rete GPS nazionale
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): Geodesy ; Seismotectonics ; CGPS network ; GPS data analysis ; Central Mediterranean ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy ; 04. Solid Earth::04.03. Geodesy::04.03.09. Instruments and techniques ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 58
    Publikationsdatum: 2017-04-04
    Beschreibung: A GPS-based geodetic study at a regional scale requires the availability of a dense network that is characterized by 10 km to 30 km spacing, typically followed in a few continuous GPS stations (CGPSs) and several nonpermanent GPS stations (NPSs). As short observation times do not allow adequate noise modeling, NPS data need specific processing where the main differences between NPSs and CGPSs are taken into account: primarily time-series length and antenna repositioning error. The GPS data collected in the 1999-2007 time-span from non-permanent measurement campaigns in the central Apennine area (Italy) that was recently hit by the Mw 6.3 L'Aquila earthquake (April 6, 2009) are here further analyzed to compute a reliable strain-rate field at a regional scale. Moreover, areas characterized by different kinematics are recognized, and a complete characterization of the regional-scale kinematics is attempted. These new data can be interpreted as indicators from the viewpoint of seismic risk assessment.
    Beschreibung: Published
    Beschreibung: 55-68
    Beschreibung: 3.3. Geodinamica e struttura dell'interno della Terra
    Beschreibung: JCR Journal
    Beschreibung: restricted
    Schlagwort(e): GPS ; Non-permanent station ; Subsampling ; Velocity ; Strain field ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 59
    Publikationsdatum: 2019-11-04
    Beschreibung: The terrestrial 3D Laser Scanning technique has been applied to analyse the surface roughness of pyroclastic deposits on volcanic surfaces at Mt. Etna. This technique allowed the construction of high accuracy digital elevation models of small surfaces, about 1 m across. Sampled surfaces differ for percentage of coverage and for grain size of the pyroclastic deposits. The change in grain size distribution for the pyroclastic unconsolidated deposits affects the surface roughness. The roughness of the site where the finest pyroclastic deposits occur is mainly governed by large scale wavelength morphology (Hurst exponent H = 0.77 for lengths larger than 16 mm). The other sampled surfaces have self-affine characters with low (0.15) to intermediate (0.35 - 0.38) Hurst exponents for lengths higher than 10 – 22 mm. Here we show results of the analysis of the surface roughness of the pyroclastic deposits emplaced during the 2001 and 2002-2003 eruptions at Mt. Etna. Grain size and thickness of pyroclastic deposits mainly control the overall roughness of such as volcanic surface.
    Beschreibung: Published
    Beschreibung: 813-822
    Beschreibung: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Beschreibung: 1.10. TTC - Telerilevamento
    Beschreibung: 3.5. Geologia e storia dei sistemi vulcanici
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): surface roughness ; pyroclastic deposits ; Laser 3D ; Mount Etna ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.03. Geomorphology ; 04. Solid Earth::04.04. Geology::04.04.10. Stratigraphy ; 04. Solid Earth::04.04. Geology::04.04.11. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 60
    Publikationsdatum: 2017-04-04
    Beschreibung: Red Pompeian paintings, very famous for their deep intensity, are currently suffering from darkening. The origins of this darkening degradation are not clearly identified yet and remain a major issue for curators. In the specific case of cinnabar (HgS)-based red pigment, a photoinduced conversion into black metacinnabar is usually suspected. This work is focused on the blackening of red cinnabar paintings coated on a sparry calcite mortar. Different samples exhibiting different levels of degradation were selected upon visual observations and analyzed by synchrotron-based microanalytical techniques. Atomic and molecular compositions of the different debased regions revealed two possible degradation mechanisms. On one hand, micro X-ray fluorescence elemental maps show peculiar distributions of chlorine and sulfur. On the other hand, X-ray absorption spectroscopy performed at both Cl and S K-edges confirms the presence of characteristic degradation products: (i) Hg- Cl compounds (e.g., corderoite, calomel, and terlinguaite), which may result from the reaction with exogenous NaCl, in gray areas; (ii) gypsum, produced by the calcite sulfation, in black coatings. Metacinnabar is never detected. Finally, a cross section was analyzed to map the in-depth alteration gradient. Reduced and oxidized sulfur distributions reveal that the sulfated black coating consists of a 5-ím-thick layer covering intact cinnabar.
    Beschreibung: Published
    Beschreibung: 7484-7492
    Beschreibung: reserved
    Schlagwort(e): Microspectroscopy Analysis ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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  • 61
    Publikationsdatum: 2019-11-04
    Beschreibung: Due to the prominent topography of Mt. Etna, the use of satellite geodetic techniques may significantly suffer from atmospheric heterogeneities. This problem mainly affects the DInSAR technique. To overcome these drawbacks the present study attempts to make headway in measuring and interpreting atmospheric anomalies. We used the GAMIT software to obtain the ZTD (Zenith Total Delay) values for the GPS sessions performed on 1996-97, during ERS-2 passes at Mt. Etna. GAMIT software also allows to characterize the statistical behaviour of the tropospheric effects, by using residuals for each station-satellite pair, and to locate the atmospheric anomalies, present mostly at low altitudes. The attempt at using these results to produce a tomography of radio waves velocity of the troposphere suggests that the number of GPS stations used to investigate atmosphere is a critical point in such a study. The three stations are too few to invert anomalies eventually existing in the lower atmosphere. This result is a good starting point for better direct future study to verify the applicability of this tomographic technique to a geodetic network with a higher number of stations, with the aim of characterizing the lower atmosphere of Mt. Etna for a more accurate monitoring of ground deformations.
    Beschreibung: Published
    Beschreibung: 267-282
    Beschreibung: 1.3. TTC - Sorveglianza geodetica delle aree vulcaniche attive
    Beschreibung: JCR Journal
    Beschreibung: open
    Schlagwort(e): GPS ; atmospheric anomalies ; tropospheric delays ; tomography of radio wave velocities ; 04. Solid Earth::04.03. Geodesy::04.03.07. Satellite geodesy
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
    Standort Signatur Erwartet Verfügbarkeit
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