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  • Other Sources  (121)
  • Springer Science + Business Media, Inc.  (54)
  • Nature Publishing Group  (44)
  • ASLO (Association for the Sciences of Limnology and Oceanography)  (23)
  • 2005-2009  (121)
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  • 1
    Publication Date: 2017-03-13
    Description: Although rising global sea levels will affect the shape of coastlines over the coming decades1, 2, the most severe and catastrophic shoreline changes occur as a consequence of local and regional-scale processes. Changes in sediment supply3 and deltaic subsidence4, 5, both natural or anthropogenic, and the occurrences of tropical cyclones4, 5 and tsunamis6 have been shown to be the leading controls on coastal erosion. Here, we use satellite images of South American mangrove-colonized mud banks collected over the past twenty years to reconstruct changes in the extent of the shoreline between the Amazon and Orinoco rivers. The observed timing of the redistribution of sediment and migration of the mud banks along the 1,500 km muddy coast suggests the dominant control of ocean forcing by the 18.6 year nodal tidal cycle7. Other factors affecting sea level such as global warming or El Niño and La Niña events show only secondary influences on the recorded changes. In the coming decade, the 18.6 year cycle will result in an increase of mean high water levels of 6 cm along the coast of French Guiana, which will lead to a 90 m shoreline retreat.
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  • 2
    Publication Date: 2018-03-09
    Description: We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO2 levels. Rates of N2 and CO2 fixation and growth increased in step with increasing partial pressure of CO2 (pCO2), but only under Fe-replete conditions. N2 and carbon fixation rates at 75 Pa CO2 were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO2 levels. In Fe-replete cultures, cellular Fe and molybdenum quotas varied threefold and were linearly related to N2 fixation rates and to external pCO2. However, N2 fixation and trace metal quotas were decoupled from pCO2 in Fe-limited Crocosphaera. Higher CO2 and Fe concentrations both resulted in increased cellular pigment contents and affected photosynthesis vs. irradiance parameters. If these results also apply to natural Crocosphaera populations, anthropogenic CO2 enrichment could substantially increase global oceanic N2 and CO2 fixation, but this effect may be tempered by Fe availability. Possible biogeochemical consequences may include elevated inputs of new nitrogen to the ocean and increased potential for Fe and/or phosphorus limitation in the future high-CO2 ocean, and feedbacks to atmospheric pCO2 in both the near future and over glacial to interglacial timescales.
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  • 3
    Publication Date: 2018-01-04
    Description: Zircon is a common mineral in continental crustal rocks. As it is not easily altered in processes such as erosion or transport, this mineral is often used in the reconstruction of geological processes such as the formation and evolution of the continents. Zircon can also survive under conditions of the Earth’s mantle, and rare cases of zircons crystallizing in the mantle significantly before their entrainment into magma and eruption to the surface have been reported1,2,3. Here we analyse the isotopic and trace element compositions of large zircons of gem quality from the Eger rift, Bohemian massif, and find that they are derived from the mantle. (U–Th)/He analyses suggest that the zircons as well as their host basalts erupted between 29 and 24 million years ago, but fragments from the same xenocrysts reveal U–Pb ages between 51 and 83 million years. We note a lack of older volcanism and of fragments from the lower crust, which suggests that crustal residence time before eruption is negligible and that most rock fragments found in similar basalts from adjacent volcanic fields equilibrated under mantle conditions. We conclude that a specific chemical environment in this part of the Earth’s upper mantle allowed the zircons to remain intact for about 20–60 million years.
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  • 4
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    Nature Publishing Group
    In:  Nature, 435 (7044). p. 901.
    Publication Date: 2019-11-11
    Description: Scattered groups of these ancient fish may all stem from a single remote population. Coelacanths were discovered in the Comoros archipelago to the northwest of Madagascar in 1952. Since then, these rare, ancient fish have been found to the south off Mozambique, Madagascar and South Africa, and to the north off Kenya and Tanzania — but it was unclear whether these are separate populations or even subspecies. Here we show that the genetic variation between individuals from these different locations is unexpectedly low. Combined with earlier results from submersible and oceanographic observations1, 2, our findings indicate that a separate African metapopulation is unlikely to have existed and that locations distant from the Comoros were probably inhabited relatively recently by either dead-end drifters or founders that originated in the Comoros.
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  • 5
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    Nature Publishing Group
    In:  Nature, 447 . p. 383.
    Publication Date: 2019-09-23
    Description: As the complex interplay of forces in the ocean responds to climate change, the dynamics of global ocean circulation are shifting.
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  • 6
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 37-38. ISBN -10: 0-387-24144-2
    Publication Date: 2012-02-23
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  • 7
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 212-215. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 8
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 25-26. 2 ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 9
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 51 (1). pp. 1-11.
    Publication Date: 2019-09-23
    Description: To date no study exists that directly addresses changes in dynamics of heterotrophic bacteria in surface waters in relation to partial pressure of CO2 (pCO2). Therefore, we studied the effect of changes in pCO2 on bacterial abundance and activities by using mesocosms with different pCO2 levels (~190, ~370, and ~700 ppmV, representing past, present-day, and future atmospheric pCO2, respectively). Abundance of total bacteria did not differ with increasing pCO2 throughout the whole study period, whereas bacterial protein production (BPP) was highest at highest pCO2. This effect was even more pronounced for cell-specific production rates, especially those of attached bacteria, which were up to 25 times higher than those of free bacteria. During the breakdown of the bloom, however, the abundance of both free and attached bacteria was significantly increased with pCO2. Differences in bacterial growth rate (µ) were smaller than those of BPP, but both µ and BPP of attached bacteria were elevated under high pCO2. Averages of total protease as well as α- and α -glucosidase activities were highest at elevated pCO2 levels, but a statistically significant dependence on pCO2 was only evident for protease activity. There is a measurable but indirect effect of changes in pCO2 on bacterial activities that are mainly linked to phytoplankton and presumably particle dynamics
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  • 10
    Publication Date: 2017-06-09
    Description: The new aromatic polyketides genoketide A1, genoketide A2 and prechrysophanol glucuronide are biosynthetic intermediates of the octaketide chrysophanol. They were isolated from the alkaliphilic strain Streptomyces sp. AK 671 together with the new metabolite chrysophanol glucuronide. The structures of the compounds were elucidated by mass spectrometry and NMR methods. Genoketide A2 exhibited a slight and prechrysophanol glucuronide a more pronounced inhibition of the proliferation of L5178y lymphoma cells.
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  • 11
    Publication Date: 2018-08-14
    Description: Nutrient addition bioassay experiments were performed in the low-nutrient, low-chlorophyll oligotrophic subtropical North Atlantic Ocean to investigate the influence of nitrogen (N), phosphorus (P), and/or iron (Fe) on phytoplankton physiology and the limitation of primary productivity or picophytoplankton biomass. Additions of N alone resulted in 1.5-2 fold increases in primary productivity and chlorophyll after 48 h, with larger (~threefold) increases observed for the addition of P in combination with N (NP). Measurements of cellular chlorophyll contents permitted evaluation of the physiological response of the photosynthetic apparatus to N and P additions in three picophytoplankton groups. In both Prochlorococcus and the picoeukaryotes, cellular chlorophyll increased by similar amounts in N and NP treatments relative to all other treatments, suggesting that pigment synthesis was N limited. In contrast, the increase of cellular chlorophyll was greater in NP than in N treatments in Synechococcus, suggestive of NP co-limitation. Relative increases in cellular nucleic acid were also only observed in Synechococcus for NP treatments, indicating co-limitation of net nucleic acid synthesis. A lack of response to relief of nutrient stress for the efficiency of photosystem II photochemistry, Fv :Fm, suggests that the low nutrient supply to this region resulted in a condition of balanced nutrient limited growth, rather than starvation. N thus appears to be the proximal (i.e. direct physiological) limiting nutrient in the oligotrophic sub-tropical North Atlantic. In addition, some major picophytoplankton groups, as well as overall autotrophic community biomass, appears to be co-limited by N and P.
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  • 12
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 14-15. ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 13
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 28-29. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 14
    Publication Date: 2019-09-23
    Description: Predicting the evolution of climate over decadal timescales requires a quantitative understanding of the dynamics that govern the meridional overturning circulation (MOC)1. Comprehensive ocean measurement programmes aiming to monitor MOC variations have been established in the subtropical North Atlantic2, 3 (RAPID, at latitude 26.5° N, and MOVE, at latitude 16° N) and show strong variability on intraseasonal to interannual timescales. Observational evidence of longer-term changes in MOC transport remains scarce, owing to infrequent sampling of transoceanic sections over past decades4, 5. Inferences based on long-term sea surface temperature records, however, supported by model simulations, suggest a variability with an amplitude of plusminus1.5–3 Sv (1 Sv = 106 m3 s-1) on decadal timescales in the subtropics6. Such variability has been attributed to variations of deep water formation in the sub-arctic Atlantic, particularly the renewal rate of Labrador Sea Water7. Here we present results from a model simulation that suggest an additional influence on decadal MOC variability having a Southern Hemisphere origin: dynamic signals originating in the Agulhas leakage region at the southern tip of Africa. These contribute a MOC signal in the tropical and subtropical North Atlantic that is of the same order of magnitude as the northern source. A complete rationalization of observed MOC changes therefore also requires consideration of signals arriving from the south.
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  • 15
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 43-48. ISBN -10: 0-387-24144-2
    Publication Date: 2012-02-23
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  • 16
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 12-14. ISBN -10: 0-387-24144-2
    Publication Date: 2012-02-23
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  • 17
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    Nature Publishing Group
    In:  Nature Geoscience, 1 (1). pp. 14-15.
    Publication Date: 2017-02-22
    Description: The relationship between carbon dioxide and climate over millions of years has been a source of controversy. Fossilized liverwort leaves can help illuminate both temperature and atmospheric carbon dioxide levels from 200 to 60 million years ago.
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  • 18
    Publication Date: 2017-02-23
    Description: Despite similar physical properties, the Northern and Southern Atlantic subtropical gyres have different biogeochemical regimes. The Northern subtropical gyre, which is subject to iron deposition from Saharan dust1, is depleted in the nutrient phosphate, possibly as a result of iron-enhanced nitrogen fixation2. Although phosphate depleted, rates of carbon fixation in the euphotic zone of the North Atlantic subtropical gyre are comparable to those of the South Atlantic subtropical gyre3, which is not phosphate limited. Here we use the activity of the phosphorus-specific enzyme alkaline phosphatase to show potentially enhanced utilization of dissolved organic phosphorus occurring over much of the North Atlantic subtropical gyre. We find that during the boreal spring up to 30% of primary production in the North Atlantic gyre is supported by dissolved organic phosphorus. Our diagnostics and composite map of the surface distribution of dissolved organic phosphorus in the subtropical Atlantic Ocean reveal shorter residence times in the North Atlantic gyre than the South Atlantic gyre. We interpret the asymmetry of dissolved organic phosphorus cycling in the two gyres as a consequence of enhanced nitrogen fixation in the North Atlantic Ocean4, which forces the system towards phosphorus limitation. We suggest that dissolved organic phosphorus utilization may contribute to primary production in other phosphorus-limited ocean settings as well.
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  • 19
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 54 (6). pp. 2283-2297.
    Publication Date: 2017-10-24
    Description: While there is a general sense that lakes can act as sentinels of climate change, their efficacy has not been thoroughly analyzed. We identified the key response variables within a lake that act as indicators of the effects of climate change on both the lake and the catchment. These variables reflect a wide range of physical, chemical, and biological responses to climate. However, the efficacy of the different indicators is affected by regional response to climate change, characteristics of the catchment, and lake mixing regimes. Thus, particular indicators or combinations of indicators are more effective for different lake types and geographic regions. The extraction of climate signals can be further complicated by the influence of other environmental changes, such as eutrophication or acidification, and the equivalent reverse phenomena, in addition to other land-use influences. In many cases, however, confounding factors can be addressed through analytical tools such as detrending or filtering. Lakes are effective sentinels for climate change because they are sensitive to climate, respond rapidly to change, and integrate information about changes in the catchment.
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  • 20
    Publication Date: 2019-09-23
    Description: Piceamycin, a new macrolactam polyketide antibiotic, was detected by HPLC-diode array screening in extracts of Streptomyces sp. GB 4-2, which was isolated from the mycorrhizosphere of Norway spruce. The structure of piceamycin was determined by mass spectrometry and NMR experiments. It showed inhibitory activity against Gram-positive bacteria, selected human tumor cell lines and protein tyrosine phosphatase 1B. The Journal of Antibiotics (2009) 62, 513-518; doi:10.1038/ja.2009.64; published online 17 July 2009
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  • 21
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 204-205. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 22
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 38-39. 2 ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 23
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 267-268. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 24
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 39-40. ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 25
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 51 (3). pp. 1217-1229.
    Publication Date: 2018-08-14
    Description: During the European Iron Fertilisation Experiment (EIFEX), performed in the Southern Ocean, we investigated the reactions of different phytoplankton size classes to iron fertilization, applying measurements of size fractionated pigments, particulate organic matter, microscopy, and flow cytometry. Chlorophyll a (Chl a) concentrations at 20-m depth increased more than fivefold following fertilization through day 26, while concentrations of particulate organic carbon (POC), nitrogen (PON), and phosphorus (POP) roughly doubled through day 29. Concentrations of Chl a and particulate organic matter decreased toward the end of the experiment, indicating the demise of the iron-induced phytoplankton bloom. Despite a decrease in total diatom biomass at the end of the experiment, biogenic particulate silicate (bPSi) concentrations increased steadily due to a relative increase of heavily silicified diatoms. Although diatoms 〉 20 mu m were the main beneficiaries of iron fertilization, the growth of small diatoms (2-8 mu m) was also enhanced, leading to a shift from a haptophyte- to a diatom-dominated community in this size fraction. The total biomass had lower than Redfield C : N, N : P, and C : P ratios but did not show significant trends after iron fertilization. This concealed various alterations in the elemental composition of the different size fractions. The microplankton 20 mu m) showed decreasing C : N and increasing N : P and C : P ratios, possibly caused by increased N uptake and the consumption of cellular P pools. The nanoplankton (2-20 mu m) showed almost constant C : N and decreasing N : P and C : P ratios. Our results suggest that the latter is caused by a shift in composition of taxonomic groups.
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  • 26
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 33-34. ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 27
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 52 (5). pp. 1809-1823.
    Publication Date: 2017-12-31
    Description: Sea ice brines were collected from a single floe composed of different ice types in the western Weddell Sea in December 2004. The chemical composition of the brines (temperature: 23.4°C to 22.1°C; salinity: 40–63) was examined on seven occasions over 25 days with measurements of dissolved oxygen, dissolved inorganic macronutrients (nitrate plus nitrite, ammonium, phosphorus [DIP], and silicic acid), pH, total alkalinity (AT), dissolved organic carbon (DOC) and nitrogen (DON), total dissolved inorganic carbon (CT), and the stable isotopic composition of CT (δ13CT). The in situ pH ranged from 8.41-8.82 on the seawater scale, dissolved oxygen from 212-604 µmol kg−1, nitrate from 0.1-3.1 µmol kg−1, ammonium 0.1-2.4 µmol kg−1, DIP 0.4- 2.0 µmol kg−1, silicic acid 4-80 µmol kg−1, AT 2,690-4,620 µeq kg−1, DOC 115-359 µmol kg−1, DON 8-26 µmol kg−1, CT 2,090-3,550 µmol kg−1, and δ13CT +2.9‰ - +6.4‰. Compared with the chemical composition of surface oceanic water (salinity of 34), the brines had elevated pH, reduced concentrations of dissolved inorganic macronutrients (including carbon), especially dissolved inorganic nitrogen, and were mostly supersaturated with dissolved oxygen with respect to equilibrium with air, whereas the CT was considerably enriched in 13C. The chemical composition of the brines was consistent with internal biological productivity, but there was a lack of a distinctive and uniform relationship among the major dissolved inorganic nutrients typically used for describing biological activity. This was interpreted as the result of varying stoichiometry of biological activity within a very small spatial scale. Modification by abiotic processes was a potential contributing factor, such as degassing acting on the dissolved oxygen concentration. Carbonate mineral formation, acting on AT and CT, was not evident in brines from first-year ice but was apparent in brine from second-year ice.
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  • 28
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    Nature Publishing Group
    In:  Nature Geoscience, 2 (7). pp. 463-464.
    Publication Date: 2015-07-10
    Description: Seafloor vents spewing mineral-rich plumes of hydrothermal fluid — termed black smokers — can persist at mid-ocean ridges for decades or longer. Earthquake data indicate that ongoing magma injection may determine their locations.
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  • 29
    Publication Date: 2020-05-11
    Description: Marine sponges (phylum Porifera) are among the oldest multicellular animals (metazoans), the sea's most prolific producers of bioactive metabolites, and of considerable ecological importance due to their abundance and ability to filter enormous volumes of seawater. In addition to these important attributes, sponge microbiology is now a rapidly expanding field.
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  • 30
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 83-85. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 31
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 54 (6). pp. 2493-2505.
    Publication Date: 2014-01-30
    Description: Life history responses are expected to accompany climate warming, yet little is known how long-term effects of climate and environmental change affect the seasonal dynamics of planktonic organisms. We used an historical data set from Lake Washington (U.S.A.) to quantify population responses of a calanoid copepod (Leptodiaptomus ashlandi) to long-term changes in temperature and resource availability and explore potential mechanisms for the responses. Increasing water temperatures (annual mean increase of 1.5 degrees C in the upper 10-m water volume) and longer stratification periods (about 4 weeks) were observed between 1962 and 2005, coincident with a pronounced decline in Leptodiaptomus densities. However, production was maintained because of an increase in the production to biomass ratio and a life cycle shift in Leptodiaptomus from an annual to a 6-month cycle. Cross-wavelet analyses demonstrated that the annual thermal forcing of copepod recruitment observed during the first two decades of the study weakened substantially, leading to more stochastic population dynamics during the past two decades. This shift from one to two generations per year was most likely produced by a longer and warmer growing period combined with changing fluctuations in resource (phytoplankton) availability. Climate change can lead to higher-frequency voltinism in ectothermic organisms and to temporal reorganization of their population dynamics.
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  • 32
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: Introductory Essays. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 133-136. 2 ISBN 978-0-387-24143-2
    Publication Date: 2012-02-23
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  • 33
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, 35 pp. 2nd ed ISBN 0-387-24144-2
    Publication Date: 2012-02-23
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  • 34
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 53 (4). pp. 1456-1467.
    Publication Date: 2018-08-14
    Description: We investigated potential connections between climate and the population size of gelatinous carnivores in the northwestern Mediterranean. The interannual variability of large- and meso-scale climate factors was related to gelatinous carnivore dynamics by means of a multivariate regression model. Gelatinous carnivore population dynamics integrate the climate-related changes in the northwestern Mediterranean with close correlations between climate and the population size of the Calycophoran siphonophores Chelophyes appendiculata and Abylopsis tetragona and the Hydromedusae Rhopalonema velatum and Solmundella bitentaculata. We show that the sensitivity of particular gelatinous carnivore species to environmental forcing relates to their seasonal appearance and peak of abundance. Our results advocate the occurrence of short time windows, during which gelatinous carnivores appear more sensitive to environmental conditions, and favorable conditions may therefore substantially enhance their annual peaks. Furthermore, there were threshold values from which climate effects on gelatinous carnivores become noticeable, indicating that the climate-gelatinous carnivore relationship intensifies according to the strength of climate forcing. The possibility of using the North Atlantic climate variability for assessing and predicting interannual abundance changes of these organisms in the northwestern Mediterranean is considered.
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  • 35
    Publication Date: 2020-10-26
    Description: Resolving flow geometry in the mantle wedge is central to understanding the thermal and chemical structure of subduction zones, subducting plate dehydration, and melting that leads to arc volcanism, which can threaten large populations and alter climate through gas and particle emission. Here we show that isotope geochemistry and seismic velocity anisotropy provide strong evidence for trench-parallel flow in the mantle wedge beneath Costa Rica and Nicaragua. This finding contradicts classical models, which predict trench-normal flow owing to the overlying wedge mantle being dragged downwards by the subducting plate. The isotopic signature of central Costa Rican volcanic rocks is not consistent with its derivation from the mantle wedge1, 2, 3 or eroded fore-arc complexes4 but instead from seamounts of the Galapagos hotspot track on the subducting Cocos plate. This isotopic signature decreases continuously from central Costa Rica to northwestern Nicaragua. As the age of the isotopic signature beneath Costa Rica can be constrained and its transport distance is known, minimum northwestward flow rates can be estimated (63–190 mm yr-1) and are comparable to the magnitude of subducting Cocos plate motion (approx85 mm yr-1). Trench-parallel flow needs to be taken into account in models evaluating thermal and chemical structure and melt generation in subduction zones.
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  • 36
    Publication Date: 2019-09-23
    Description: In the context of gradual Cenozoic cooling, the timing of the onset of significant Northern Hemisphere glaciation 2.7 million years ago is consistent with Milankovitch's orbital theory, which posited that ice sheets grow when polar summertime insolation and temperature are low. However, the role of moisture supply in the initiation of large Northern Hemisphere ice sheets has remained unclear. The subarctic Pacific Ocean represents a significant source of water vapour to boreal North America, but it has been largely overlooked in efforts to explain Northern Hemisphere glaciation. Here we present alkenone unsaturation ratios and diatom oxygen isotope ratios from a sediment core in the western subarctic Pacific Ocean, indicating that 2.7 million years ago late-summer sea surface temperatures in this ocean region rose in response to an increase in stratification. At the same time, winter sea surface temperatures cooled, winter floating ice became more abundant and global climate descended into glacial conditions. We suggest that the observed summer warming extended into the autumn, providing water vapour to northern North America, where it precipitated and accumulated as snow, and thus allowed the initiation of Northern Hemisphere glaciation.
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  • 37
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 54 (2). pp. 644-648.
    Publication Date: 2019-09-23
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  • 38
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 18-20. ISBN -10: 0-387-24144-2
    Publication Date: 2012-02-23
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  • 39
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    Nature Publishing Group
    In:  Nature Geoscience, 2 (4). pp. 243-244.
    Publication Date: 2019-09-23
    Description: The enhanced Arctic warming over the past three decades is attracting much attention. Combining forward and inverse models with observations suggests that regional changes in aerosol concentrations have contributed significantly.
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  • 40
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 24-25. 2 ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 41
    Publication Date: 2018-08-14
    Description: We quantify, compare, and generalize responses of experimental nutrient loadings (LN) on planktonic community structure and function in coastal waters. Data were derived from three mesocosm experiments undertaken in Baltic (BAL), Mediterranean (MED), and Norwegian (NOR) coastal waters. A planktonic model with seven functional compartments and 30-32 different carbon flows fit to all three experiments was used as a framework for flow-rate estimation and comparison. Flows were estimated on the basis of time series of measured biomass, some measured flows, and inverse modeling. Biomass and gross uptake rate of carbon of most groups increased linearly with increasing LN in the nutrient input range of 0-1 µmol N L-1 d-1 at all locations. The fate of the gross primary production (GPP) was similar in all systems. Autotrophic biomass varied by two orders of magnitude among locations, with the lowest biomass and response to nutrient addition in MED waters. The variation of GPP among sites was less than one order of magnitude. Mesozooplankton dominated by doliolids (Tunicata), but not those dominated by copepods, presumably exerted efficient control of the autotrophic biomass, thereby buffering responses of autotrophs to high nutrient input. Among the many factors that can modify the responses of autotrophs to nutrients, the time scale over which the enrichment is made and the precise mode of nutrient enrichment are important. We suggest a general concept that may contribute to a scientific basis for understanding and managing coastal eutrophication
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  • 42
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 32-33. ISBN -10:0387-24145-0
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  • 43
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 16-18. ISBN -10: 0-387-24144-2
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  • 44
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 1-3. ISBN -10: 0-387-24144-2
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  • 45
    Publication Date: 2020-02-18
    Description: The climate of the North Atlantic region exhibits fluctuations on decadal timescales that have large societal consequences. Prominent examples include hurricane activity in the Atlantic1, and surface-temperature and rainfall variations over North America2, Europe3 and northern Africa4. Although these multidecadal variations are potentially predictable if the current state of the ocean is known5, 6, 7, the lack of subsurface ocean observations8 that constrain this state has been a limiting factor for realizing the full skill potential of such predictions9. Here we apply a simple approach—that uses only sea surface temperature (SST) observations—to partly overcome this difficulty and perform retrospective decadal predictions with a climate model. Skill is improved significantly relative to predictions made with incomplete knowledge of the ocean state10, particularly in the North Atlantic and tropical Pacific oceans. Thus these results point towards the possibility of routine decadal climate predictions. Using this method, and by considering both internal natural climate variations and projected future anthropogenic forcing, we make the following forecast: over the next decade, the current Atlantic meridional overturning circulation will weaken to its long-term mean; moreover, North Atlantic SST and European and North American surface temperatures will cool slightly, whereas tropical Pacific SST will remain almost unchanged. Our results suggest that global surface temperature may not increase over the next decade, as natural climate variations in the North Atlantic and tropical Pacific temporarily offset the projected anthropogenic warming.
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  • 46
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    Nature Publishing Group
    In:  Nature Geoscience, 1 (7). pp. 423-424.
    Publication Date: 2017-02-23
    Description: Ninety-five million years ago, ocean bottom waters were much warmer than at present. Some of this warmth could have come from the proto-North Atlantic's continental shelves after the balmy surface waters became increasingly salty through evaporation.
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  • 47
    Publication Date: 2019-09-23
    Description: The transport of warm and salty Indian Ocean waters into the Atlantic Ocean—the Agulhas leakage—has a crucial role in the global oceanic circulation1 and thus the evolution of future climate. At present these waters provide the main source of heat and salt for the surface branch of the Atlantic meridional overturning circulation (MOC)2. There is evidence from past glacial-to-interglacial variations in foraminiferal assemblages3 and model studies4 that the amount of Agulhas leakage and its corresponding effect on the MOC has been subject to substantial change, potentially linked to latitudinal shifts in the Southern Hemisphere westerlies5. A progressive poleward migration of the westerlies has been observed during the past two to three decades and linked to anthropogenic forcing6, but because of the sparse observational records it has not been possible to determine whether there has been a concomitant response of Agulhas leakage. Here we present the results of a high-resolution ocean general circulation model7, 8 to show that the transport of Indian Ocean waters into the South Atlantic via the Agulhas leakage has increased during the past decades in response to the change in wind forcing. The increased leakage has contributed to the observed salinification9 of South Atlantic thermocline waters. Both model and historic measurements off South America suggest that the additional Indian Ocean waters have begun to invade the North Atlantic, with potential implications for the future evolution of the MOC.
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  • 48
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 727-732. ISBN -10:0387-24145-0
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  • 49
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 161-167. ISBN -10:0387-24145-0
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  • 50
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    In:  Limnology and Oceanography, 51 . pp. 12-20.
    Publication Date: 2018-08-14
    Description: We investigated the carbon acquisition of three marine microalgae, Skeletonema costatum, Phaeocystis globosa, and Emiliania huxleyi in response to different light regimes. Rates of photosynthetic O2 evolution and CO2 and HCO3- uptake were measured by membrane inlet mass spectrometry in cells acclimated to cycles of 16 : 8 light : dark (LD; h : h) and 12 : 12 LD and were compared with those obtained under continuous light. In addition, cellular leakage was estimated for different photoperiods and ambient CO2 concentrations during growth. Maximum rates of photosynthesis more or less doubled under LD cycles compared with continuous light. In S. costatum and E. huxleyi, a remarkably higher contribution of HCO3- to the overall carbon uptake was observed under LD cycles. In contrast, P. globosa did not change its CO2 :HCO3- uptake ratio in response to daylength. Half saturation concentrations (K1/2) for O2 evolution and inorganic carbon (Ci) uptake were also influenced by the photoperiod. Under LD cycles K1/2 values for photosynthesis in S. costatum and P. globosa were similar or higher compared with continuous light, whereas they were much lower in E. huxleyi. With the exception of CO2 uptake in E. huxleyi and P. globosa, affinities for Ci decreased under the LD cycles. Cellular leakage was highest for E. huxleyi and lowest for S. costatum and generally decreased with increasing CO2 concentration. Although this study confirms species specific differences in the CO2-concentrating mechanisms (CCMs), the effect of daylength on CO2 and HCO3- uptake has hitherto not been described. We put forward the idea that variations in light condition influence the cellular carbon demand, thereby imposing a stronger control on CCM regulation than the naturally occurring changes in CO2 supply.
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  • 51
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 473-476. ISBN -10:0387-24145-0
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  • 52
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 205-209. 2 ISBN 978-0-387-24145-6
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  • 53
    Publication Date: 2019-09-23
    Description: The early oceanographic history of the Arctic Ocean is important in regulating, and responding to, climatic changes. However, constraints on its oceanographic history preceding the Quaternary (the past 1.8 Myr) have become available only recently, because of the difficulties associated with obtaining continuous sediment records in such a hostile setting. Here, we use the neodymium isotope compositions of two sediment cores recovered near the North Pole to reconstruct over the past approx15 Myr the sources contributing to Arctic Intermediate Water, a water mass found today at depths of 200 to 1,500 m. We interpret high neodymium ratios for the period between 15 and 2 Myr ago, and for the glacial periods thereafter, as indicative of weathering input from the Siberian Putoranan basalts into the Arctic Ocean. Arctic Intermediate Water was then derived from brine formation in the Eurasian shelf regions, with only a limited contribution of intermediate water from the North Atlantic. In contrast, the modern circulation pattern, with relatively high contributions of North Atlantic Intermediate Water and negligible input from brine formation, exhibits low neodymium isotope ratios and is typical for the interglacial periods of the past 2 Myr. We suggest that changes in climatic conditions and the tectonic setting were responsible for switches between these two modes.
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  • 54
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 37-38. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 55
    Publication Date: 2019-09-23
    Description: In recent studies the Sr/Ca ratio of coccolithophore calcite was used as a proxy for past coccolithophore growth and calcification rates. Since Sr and Ca concentrations in seawater have not remained constant through time, interpretation of Sr/Ca data from the coccolith-dominated sedimentary record requires knowledge about the incorporation of seawater Sr into coccolith calcite during coccolithogenesis. Here we show that Sr/Ca of Emiliania huxleyi coccoliths is linearly related to seawater Sr/Ca, meaning that the Sr exchange coefficient does not change with changing seawater Sr/Ca. The exchange coefficient for Sr in this study, 0.39, is close to values presented in the literature and is high compared with values obtained by inorganic precipitation experiments. This suggests a strong effect of cell physiology on biogenic calcite precipitation in coccolithophores. We present a conceptual model, based on the transmembrane transport of Sr and Ca, which explains the offset.
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  • 56
    Publication Date: 2019-09-23
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  • 57
    Publication Date: 2017-02-22
    Description: Organic-rich sedimentary units called sapropels have formed repeatedly in the eastern Mediterranean Sea, in response to variations of solar radiation. Sapropel formation is due to a change either in the flux of organic matter to the sea floor from productivity changes or in preservation by bottom-water oxygen levels. However, the relative importance of surface-ocean productivity versus deep-water preservation for the formation of these organic-rich shale beds is still being debated, and conflicting interpretations are often invoked1, 2, 3, 4, 5, 6, 7. Here we analyse at high resolution the differences in the composition of the most recent sapropel, S1, in a suite of cores covering the entire eastern Mediterranean basin. We demonstrate that during the 4,000 years of sapropel formation, surface-water salinity was reduced and the deep eastern Mediterranean Sea, below 1,800 m depth, was devoid of oxygen. This resulted in the preferential basin-wide preservation of sapropel S1 with different characteristics above and below 1,800 m depth as a result of different redox conditions. We conclude that climate-induced stratification of the ocean may therefore contribute to enhanced preservation of organic matter in sapropels and potentially also in black shales.
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  • 58
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 20-21. ISBN -10: 0-387-24144-2
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  • 59
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 26-28. 2 ISBN 978-0-387-24144-9
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  • 60
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 3-9. ISBN -10: 0-387-24144-2
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  • 61
    Publication Date: 2019-07-03
    Description: The history of the Arctic Ocean during the Cenozoic era (0–65 million years ago) is largely unknown from direct evidence. Here we present a Cenozoic palaeoceanographic record constructed from 〉400 m of sediment core from a recent drilling expedition to the Lomonosov ridge in the Arctic Ocean. Our record shows a palaeoenvironmental transition from a warm 'greenhouse' world, during the late Palaeocene and early Eocene epochs, to a colder 'icehouse' world influenced by sea ice and icebergs from the middle Eocene epoch to the present. For the most recent approx14 Myr, we find sedimentation rates of 1–2 cm per thousand years, in stark contrast to the substantially lower rates proposed in earlier studies; this record of the Neogene reveals cooling of the Arctic that was synchronous with the expansion of Greenland ice (approx3.2 Myr ago) and East Antarctic ice (approx14 Myr ago). We find evidence for the first occurrence of ice-rafted debris in the middle Eocene epoch (approx45 Myr ago), some 35 Myr earlier than previously thought; fresh surface waters were present at approx49 Myr ago, before the onset of ice-rafted debris. Also, the temperatures of surface waters during the Palaeocene/Eocene thermal maximum (approx55 Myr ago) appear to have been substantially warmer than previously estimated. The revised timing of the earliest Arctic cooling events coincides with those from Antarctica, supporting arguments for bipolar symmetry in climate change.
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  • 62
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 54-62. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 63
    Publication Date: 2019-09-23
    Description: Deep-water formation in the northern North Atlantic Ocean and the Arctic Ocean is a key driver of the global thermohaline circulation and hence also of global climate1. Deciphering the history of the circulation regime in the Arctic Ocean has long been prevented by the lack of data from cores of Cenozoic sediments from the Arctic's deep-sea floor. Similarly, the timing of the opening of a connection between the northern North Atlantic and the Arctic Ocean, permitting deep-water exchange, has been poorly constrained. This situation changed when the first drill cores were recovered from the central Arctic Ocean2. Here we use these cores to show that the transition from poorly oxygenated to fully oxygenated ('ventilated') conditions in the Arctic Ocean occurred during the later part of early Miocene times. We attribute this pronounced change in ventilation regime to the opening of the Fram Strait. A palaeo-geographic and palaeo-bathymetric reconstruction of the Arctic Ocean, together with a physical oceanographic analysis of the evolving strait and sill conditions in the Fram Strait, suggests that the Arctic Ocean went from an oxygen-poor 'lake stage', to a transitional 'estuarine sea' phase with variable ventilation, and finally to the fully ventilated 'ocean' phase 17.5 Myr ago. The timing of this palaeo-oceanographic change coincides with the onset of the middle Miocene climatic optimum3, although it remains unclear if there is a causal relationship between these two events.
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 15-16. ISBN -10: 0-387-24144-2
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 34-35. ISBN 978-0-387-24144-9
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, 39 pp. 2 ISBN 978-0-387-24145-6
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  • 67
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    Nature Publishing Group
    In:  Nature, 434 . E2.
    Publication Date: 2017-03-10
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    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 228-229. ISBN -10:0387-24145-0
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  • 69
    Publication Date: 2017-03-06
    Description: Diatoms are photosynthetic secondary endosymbionts found throughout marine and freshwater environments, and are believed to be responsible for around one-fifth of the primary productivity on Earth1, 2. The genome sequence of the marine centric diatom Thalassiosira pseudonana was recently reported, revealing a wealth of information about diatom biology3, 4, 5. Here we report the complete genome sequence of the pennate diatom Phaeodactylum tricornutum and compare it with that of T. pseudonana to clarify evolutionary origins, functional significance and ubiquity of these features throughout diatoms. In spite of the fact that the pennate and centric lineages have only been diverging for 90 million years, their genome structures are dramatically different and a substantial fraction of genes (approx40%) are not shared by these representatives of the two lineages. Analysis of molecular divergence compared with yeasts and metazoans reveals rapid rates of gene diversification in diatoms. Contributing factors include selective gene family expansions, differential losses and gains of genes and introns, and differential mobilization of transposable elements. Most significantly, we document the presence of hundreds of genes from bacteria. More than 300 of these gene transfers are found in both diatoms, attesting to their ancient origins, and many are likely to provide novel possibilities for metabolite management and for perception of environmental signals. These findings go a long way towards explaining the incredible diversity and success of the diatoms in contemporary oceans.
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  • 70
    Publication Date: 2019-09-23
    Description: The tectonically driven closure of tropical seaways during the Pliocene epoch (approx5–2 million years (Myr) ago) altered ocean circulation and affected the evolution of climate. Plate tectonic reconstructions show that the main reorganization of one such seaway, the Indonesian Gateway, occurred between 4 and 3 Myr ago. Model simulations have suggested that this would have triggered a switch in the source of waters feeding the Indonesian throughflow into the Indian Ocean, from the warm salty waters of the South Pacific Ocean to the cool and relatively fresh waters of the North Pacific Ocean. Here we use paired measurements of the delta18O and Mg/Ca ratios of planktonic foraminifera to reconstruct the thermal structure of the eastern tropical Indian Ocean from 5.5 to 2 Myr ago. We find that sea surface conditions remained relatively stable throughout the interval, whereas subsurface waters freshened and cooled by about 4 °C between 3.5 and 2.95 Myr ago. We suggest that the restriction of the Indonesian Gateway led to the cooling and shoaling of the thermocline in the tropical Indian Ocean. We conclude that this tectonic reorganization contributed to the global shoaling of the thermocline recorded during the Pliocene epoch, possibly contributing to the development of the equatorial eastern Pacific cold tongue.
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  • 71
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 33-35. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 72
    Publication Date: 2017-02-22
    Description: Oceanic fixed-nitrogen concentrations are controlled by the balance between nitrogen fixation and denitrification. A number of factors, including iron limitation, can restrict nitrogen fixation, introducing the potential for decoupling of nitrogen inputs and losses. Such decoupling could significantly affect the oceanic fixed-nitrogen inventory and consequently the biological component of ocean carbon storage and hence air–sea partitioning of carbon dioxide. However, the extent to which nutrients limit nitrogen fixation in the global ocean is uncertain. Here, we examined rates of nitrogen fixation and nutrient concentrations in the surface waters of the Atlantic Ocean along a north–south 10,000 km transect during October and November 2005. We show that rates of nitrogen fixation were markedly higher in the North Atlantic compared with the South Atlantic Ocean. Across the two basins, nitrogen fixation was positively correlated with dissolved iron and negatively correlated with dissolved phosphorus concentrations. We conclude that inter-basin differences in nitrogen fixation are controlled by iron supply rather than phosphorus availability. Analysis of the nutrient content of deep waters suggests that the fixed nitrogen enters North Atlantic Deep Water. Our study thus supports the suggestion that iron significantly influences nitrogen fixation5, and that subsequent interactions with ocean circulation patterns contribute to the decoupling of nitrogen fixation and loss.
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  • 73
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 571-574. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 74
    Publication Date: 2017-02-22
    Description: Observations show a significant intensification of the Southern Hemisphere westerlies, the prevailing winds between the latitudes of 30° and 60° S, over the past decades. A continuation of this intensification trend is projected by climate scenarios for the twenty-first century. The response of the Antarctic Circumpolar Current and the carbon sink in the Southern Ocean to changes in wind stress and surface buoyancy fluxes is under debate. Here we analyse the Argo network of profiling floats and historical oceanographic data to detect coherent hemispheric-scale warming and freshening trends that extend to depths of more than 1,000 m. The warming and freshening is partly related to changes in the properties of the water masses that make up the Antarctic Circumpolar Current, which are consistent with the anthropogenic changes in heat and freshwater fluxes suggested by climate models. However, we detect no increase in the tilt of the surfaces of equal density across the Antarctic Circumpolar Current, in contrast to coarse-resolution model studies. Our results imply that the transport in the Antarctic Circumpolar Current and meridional overturning in the Southern Ocean are insensitive to decadal changes in wind stress.
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  • 75
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 1-6. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 76
    Publication Date: 2019-09-23
    Description: Caboxamycin, a new benzoxazole antibiotic, was detected by HPLC-diode array screening in extracts of the marine strain Streptomyces sp. NTK 937, which was isolated from deep-sea sediment collected in the Canary Basin. The structure of caboxamycin was determined by mass spectrometry, NMR experiments and X-ray analysis. It showed inhibitory activity against Gram-positive bacteria, selected human tumor cell lines and the enzyme phosphodiesterase.
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  • 77
    Publication Date: 2019-09-23
    Description: Gombapyrones A–D, new members of the α-pyrone family of secondary metabolites, were produced by Streptomyces griseoruber Acta 3662, which was isolated from bamboo tree rhizosphere. The strain was characterized by its morphological and chemotaxonomical features and by 16S rDNA sequencing as S. griseobuber. The gombapyrone structures were determined by mass spectrometry and by NMR experiments, and were found to have an inhibitory activity against protein tyrosine phosphatase 1B and glycogen synthase kinase 3β.
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  • 78
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 10-12. ISBN -10: 0-387-24144-2
    Publication Date: 2012-02-23
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  • 79
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 53 . pp. 1722-1733.
    Publication Date: 2017-05-02
    Description: Identification of the proximal nutrient limiting primary production is a necessary first step toward evaluating the physiological state of phytoplankton communities and the biogeochemical constraints on the current oceanic carbon cycle. We conducted 48-h nutrient addition bioassay experiments to evaluate nitrogen, phosphorus, and iron limitation of primary productivity, net chlorophyll synthesis, and net increase in cell numbers of the dominant picophytoplankton from the tropical North Atlantic. Our results indicate that N was the proximal limiting factor for primary production during the autumn of 2002, followed by P and then Fe. Net chlorophyll synthesis was significantly stimulated by addition of N alone and further stimulated by addition of P. Analysis of picophytoplankton populations by analytical flow cytometry revealed a more complex response. Cellular red fluorescence, an index of cell chlorophyll content, increased in Prochlorococcus, Synechococcus, and picoeukaryotes in response to addition of NH4NO3 but was not affected by single or combined additions of P and Fe. In contrast, cell abundance in these picophytoplankton populations increased only after combined N and P (63% of comparisons) or N and Fe (21% of comparisons) additions. Thus, our experiments revealed that chlorophyll synthesis and primary production were limited by the availability of nitrogen alone, while net increase in cell abundance was colimited by N and P or N and Fe in the majority of these picophytoplankton populations.
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  • 80
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 887-890. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 81
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 746-748. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 82
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Gammaproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 36-37. 2 ISBN 978-0-387-24144-9
    Publication Date: 2012-02-23
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  • 83
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    Nature Publishing Group
    In:  Nature, 454 . pp. 46-47.
    Publication Date: 2019-09-23
    Description: Rising levels of atmospheric carbon dioxide lead to acidification of the oceans. A site in the Mediterranean, naturally carbonated by under-sea volcanoes, provides clues to the possible effects on marine ecosystems.
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  • 84
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 749-750. 2 ISBN 978-0-387-24145-6
    Publication Date: 2012-02-23
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  • 85
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 471-473. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 86
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    Springer Science + Business Media, Inc.
    In:  In: Bergey's Manual of Systematic Bacteriology: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. , ed. by Brenner, D. J., Krieg, N. R. and Staley, J. T. Springer Science + Business Media, Inc., New York, pp. 545-549. ISBN -10:0387-24145-0
    Publication Date: 2012-02-23
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  • 87
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 54 (4). pp. 1197-1209.
    Publication Date: 2014-01-30
    Description: Thousands of moribund thaliacean carcasses (Pyrosoma atlanticum) were deposited between February and March 2006 at the seafloor in the Ivory Coast area (West Africa). Remotely operated vehicle surveys were conducted in a continuous depth gradient between 20 and 1275 m along an oil pipeline. Video and still photography were used to estimate the carcass distribution, density, and size on the seabed, as well as recording the local megafauna interactions with the gelatinous material. Large patches of dead pyrosomids covered extensive areas on the continental slope, whereas minor aggregations were found on the shelf. The carcasses were in many instances trapped along the pipelines, accumulating extensively in troughs and furrows in the slope, and especially in soft sediment channels. Pyrosoma atlanticum dried samples were used to calculate the carbon content, enabling the extrapolation to the densities and sizes recorded in the video surveys. The average standing stock of organic carbon associated with the carcasses was 〉5 g C m-2 in the whole slope and canyon, with values as high as 22 g C m-2 in certain areas. Eight megafaunal species from three different phyla were observed 63 times directly feeding on the decomposing carcasses. The gelatinous carbon may have contributed substantially to the detrital food web including microbes at the seabed, and certainly to the diet of larger benthic organisms. The organism-level carbon measurements and documented fate of pyrosomid organic carbon is new evidence of the importance of gelatinous material in large-scale processes and elemental cycling.
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  • 88
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 52 . pp. 2062-2071.
    Publication Date: 2019-09-23
    Description: We investigated whether nutrient limitations of primary producers act upward through food webs only in terms of density effects or if there is a second pathway for nutrient limitation signals channelled upward to higher trophic levels. We used tritrophic food chains to assess the effects of nutrient-limited phytoplankters (the cryptophyte Rhodomonas salina) on herbivorous zooplankters (the calanoid copepod Acartia tonsa) and finally zooplanktivores (larval herring Clupea harengus) living on the herbivores. The primary producers� food quality had a significant effect on fish condition. Our experimental phosphorus-limited food chain resulted in larval fish with a significantly poorer condition than their counterparts reared under nitrogen-limited or nutrient-sufficient conditions. Our results show that mineral nutrient requirements of consumers have to be satisfied first before fatty acids can promote further growth. This challenges the match/mismatch hypothesis, which links larval fish survival probability solely to prey availability, and could imply that reduced nutrient releases into the environment may affect fish stocks even more severely than previously believed.
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  • 89
    Publication Date: 2017-02-22
    Description: Subduction zones are often characterized by wedge-shaped sedimentary complexes—called accretionary prisms—that form when sediments are scraped off the subducting plate and added to the overriding plate. Large, landward-dipping thrust faults can cut through such a prism: these faults, known as 'megasplay faults'1, 2, originate near the top of the subducting plate and terminate at the shallow, landward edge of the prism1, 3, 4, 5, 6. Megasplay faults have been the subject of numerous geological and geophysical studies4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, but their initiation and evolution through time remains poorly constrained. Here we combine seismic reflection data from the Nankai accretionary wedge with geological data collected by the Integrated Ocean Drilling Program (IODP) and find that the splay fault cutting this wedge initiated approx1.95 Million years (Myr) ago in the lower part of the prism as an out-of-sequence thrust (OOST). After an initial phase of high activity, the movement along the fault slowed down, but uplift and reactivation of the fault resumed about 1.55 Myr ago. The alternating periods of high and low activity along the splay fault that we document hint at episodic changes in the mechanical stability of accretionary prisms.
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  • 90
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 50 (6). pp. 1771-1786.
    Publication Date: 2014-01-30
    Description: We investigated the effect of seasonal environmental changes on the rate and distribution of anaerobic oxidation of methane (AOM) in Eckernforde Bay sediments (German Baltic Sea) and identified organisms that are likely to be involved in the process. Surface sediments were sampled during September and March. Field rates of AOM and sulfate reduction (SR) were measured with radiotracer methods. Additional parameters were determined that potentially influence AOM, i.e., temperature, salinity, methane, sulfate, and chlorophyll a. Methanogenesis as well as potential rates of AOM and aerobic oxidation of methane were measured in vitro. AOM changed seasonally within the upper 20 cm of the sediment, with rates being between 1 and 14 nmol cm(-3) d(-1). Its distribution is suggested to be controlled by oxygen and sulfate penetration, temperature, as well as methane supply, leading to a shallow AOM zone during the warm productive season and to a slightly deeper AOM zone during the cold winter season. Rising methane bubbles apparently fed AOM above the sulfate-methane transition. Methanosarcinales-related anaerobic methanotrophs (ANME-2), identified with fluorescence in situ hybridization, is suggested to mediate AOM in Eckerntorde Bay. These archaea are known also from other marine methane-rich locations. However, they were not directly associated with sulfate-reducing bacteria. AOM is possibly mediated solely by these archaea that show a mesophilic physiology according to the seasonal temperature changes in Eckernforde Bay.
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  • 91
    Publication Date: 2016-05-25
    Description: The ecological niche of nitrate-storing Beggiatoa, and their contribution to the removal of sulfide were investigated in coastal sediment. With microsensors a clear suboxic zone of 2-10cm thick was identified, where neither oxygen nor free sulfide was detectable. In this zone most of the Beggiatoa were found, where they oxidize sulfide with internally stored nitrate. The sulfide input into the suboxic zone was dominated by an upward sulfide flux from deeper sediment, whereas the local production in the suboxic zone was much smaller. Despite their abundance, the calculated sulfide-oxidizing capacity of the Beggiatoa could account for only a small fraction of the total sulfide removal in the sediment. Consequently, most of the sulfide flux into the suboxic layer must have been removed by chemical processes, mainly by precipitation with Fe2+ and oxidation by Fe(III), which was coupled with a pH increase. The free Fe2+ diffusing upwards was oxidized by Mn(IV), resulting in a strong pH decrease. The nitrate storage capacity allows Beggiatoa to migrate randomly up and down in anoxic sediments with an accumulated gliding distance of 4m before running out of nitrate. We propose that the steep sulfide gradient and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa.
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  • 92
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 52 (6). pp. 2530-2539.
    Publication Date: 2014-01-30
    Description: To investigate the biogeochemistry of iron in the waters of the European continental margin, we determined the dissolved iron distribution and redox speciation in filtered (〈0.2 μm) open-ocean and shelf waters. Depth profiles were sampled over the shelf slope southeast of the Chapelle Bank area (47.61°N, 4.24°W to 46.00°N, 8.01°W) and a horizontal surface-water transect over the shelf and through the English Channel (la Manche) and the southern North Sea (46°N, 8°W to 52°N, 4°E). An abrupt trace-metal front was found near the shelf slope, indicated by a horizontal gradient of dissolved iron (DFe) and aluminium (DAl), which correlated with changing salinities (r2 = 0.572 and 0.528, respectively, n = 92). Labile Fe(II) concentrations varied from 〈12 pmol L-1 in North Atlantic surface waters to >200 pmol L-1 in the near bottom waters of the shelf break. Labile Fe(II) accounted for ∼5 of the dissolved iron species in surface shelf waters (mean 5.0 ± 2.7), whereas higher Fe(II) fractions (i.e., >8) were observed near the sea bottom on the shelf break and during a midday solar maximum in surface waters in the vicinity of the Scheldt river plume. Benthic processes (resuspension and diagenesis) constituted important sources of Fe(II) and DFe in this region, and photoreduction of Fe(III) species in shelf waters caused enhanced labile Fe(II) concentrations. These processes increased the lability of iron and its potential availability to marine organisms in the shelf ecosystem. © 2007, by the American Society of Limnology and Oceanography, Inc.
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  • 93
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    Nature Publishing Group
    In:  Nature, 459 (7244). pp. 166-167.
    Publication Date: 2019-03-08
    Description: As scientists discover more about the genomes of marine microorganisms, new views of their physiology and ecosystem networks are opening up, explain Alexandra Z. Worden and Darcy McRose. "Alien Ocean: Anthropological Voyages in Microbial Seas by Stefan Helmreich University of California Press: 2009. 464 pp."
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  • 94
    Publication Date: 2020-01-07
    Description: Large uncertainties remain in the current and future contribution to sea level rise from Antarctica. Climate warming may increase snowfall in the continent’s interior1,2,3, but enhance glacier discharge at the coast where warmer air and ocean temperatures erode the buttressing ice shelves4,5,6,7,8,9,10,11. Here, we use satellite interferometric synthetic-aperture radar observations from 1992 to 2006 covering 85% of Antarctica’s coastline to estimate the total mass flux into the ocean. We compare the mass fluxes from large drainage basin units with interior snow accumulation calculated from a regional atmospheric climate model for 1980 to 2004. In East Antarctica, small glacier losses in Wilkes Land and glacier gains at the mouths of the Filchner and Ross ice shelves combine to a near-zero loss of 4±61 Gt yr−1. In West Antarctica, widespread losses along the Bellingshausen and Amundsen seas increased the ice sheet loss by 59% in 10 years to reach 132±60 Gt yr−1 in 2006. In the Peninsula, losses increased by 140% to reach 60±46 Gt yr−1 in 2006. Losses are concentrated along narrow channels occupied by outlet glaciers and are caused by ongoing and past glacier acceleration. Changes in glacier flow therefore have a significant, if not dominant impact on ice sheet mass balance.
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  • 95
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    Nature Publishing Group
    In:  The ISME Journal, 3 (1). pp. 4-12.
    Publication Date: 2019-09-24
    Description: Our understanding of the composition and activities of microbial communities from diverse habitats on our planet has improved enormously during the past decade, spurred on largely by advances in molecular biology. Much of this research has focused on the bacteria, and to a lesser extent on the archaea and viruses, because of the relative ease with which these assemblages can be analyzed and studied genetically. In contrast, single-celled, eukaryotic microbes (the protists) have received much less attention, to the point where one might question if they have somehow been demoted from the position of environmentally important taxa. In this paper, we draw attention to this situation and explore several possible (some admittedly lighthearted) explanations for why these remarkable and diverse microbes have remained largely overlooked in the present era of the microbe. © 2009 International Society for Microbial Ecology All rights reserved.
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  • 96
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    Nature Publishing Group
    In:  Nature, 433 (7023). p. 212.
    Publication Date: 2021-08-16
    Description: Sexual mimicry among animals is widespread, but does it impart a fertilization advantage in the widely accepted ‘sneak–guard’ model of sperm competition? Here we describe field results in which a dramatic facultative switch in sexual phenotype by sneaker-male cuttlefish leads to immediate fertilization success, even in the presence of the consort male. These results are surprising, given the high rate at which females reject copulation attempts by males, the strong mate-guarding behaviour of consort males, and the high level of sperm competition in this complex mating system
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  • 97
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    Nature Publishing Group
    In:  Nature, 438 (7070). p. 929.
    Publication Date: 2021-08-20
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  • 98
    Publication Date: 2018-08-14
    Description: Bacterial productivity and biomass are thought to be limited by dissolved organic carbon (DOC) in much of the world’s oceans. However, the mixed layer of oligotrophic oceans is often depleted in dissolved inorganic nitrogen and phosphate, raising the possibility that macronutrients may also limit heterotrophic bacterial growth. We used nutrient bioassay experiments to determine whether inorganic nutrients (N, P, Fe) and/or DOC could limit bacterial productivity and biomass in the central North Atlantic during the spring of 2004 (Mar–Apr). We observed that both heterotrophic bacterial productivity and biomass were co-limited by N and P in the oligotrophic North Atlantic, and additions of labile DOC (glucose) provided no stimulation unless N and P were also added. Flow cytometry results indicated that only a small subset of large cells high in nucleic acid content were responsible for the increased productivity in the combined NP amendments. In contrast, nutrient additions elicited no net change on the dominant component of the bacterial population, composed of small cells with relatively low nucleic acid content. In the combined NP treatments the relative increase in bacterial production was greater than that measured when phytoplankton productivity was relieved of nitrogen limitation. These results suggest that N and P co-limitation in the bacterial community results in increased competition between the heterotrophic and autotrophic components of the surface communities in the Central North Atlantic Ocean, and potentially impacts the cycling of organic matter by the bacterioplankton.
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  • 99
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    Nature Publishing Group
    In:  Nature, 459 . pp. 243-248.
    Publication Date: 2017-03-06
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  • 100
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 51 . pp. 569-579.
    Publication Date: 2014-01-30
    Description: Eutrophication can profoundly change rocky shore communities. These changes often cause the replacement of perennial, canopy-forming algae such as Fucus spp. with annual, bloom-forming algae such as Enteromorpha spp. Grazing, however, can counteract eutrophication by eliminating the annual algae�s susceptible recruits. We examine these generalizations across large scales. We use replicated ��bioassay�� experiments to compare the effects of eutrophication and grazing across four paired control versus eutrophied sites in the Northwest Atlantic and four eutrophied sites in the Baltic Sea in spring and summer. At each site, annual algal recruitment and grazing pressure were estimated using tiles seeded with Enteromorpha intestinalis propagules. Tiles were exposed for 3 weeks with grazers excluded or allowed access. Productivity of E. intestinalis recruits was strongly related to eutrophication (10-fold increase) and grazing (80% decrease) and was weakly related to season. While the absolute grazing rate increased in a linear fashion with algal productivity, the relative grazing rate remained surprisingly constant (;80%). Comparative field surveys showed that perennial algae decreased by 30-60%, while annual algae, filter feeders, and grazers increased across a gradient of eutrophication. As eutrophication increased from control to eutrophied to point source sites, rocky shore communities became increasingly dominated by single species of annual algae or filter feeders, and community diversity declined consistently by 24-46%. We conclude that grazers are important controllers of algal blooms but that, ultimately, they cannot override the effects of increasing eutrophication on rocky shore community structure and biodiversity.
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