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  • 1
    Publication Date: 2010-04-14
    Print ISSN: 0024-3590
    Electronic ISSN: 1939-5590
    Topics: Biology , Geosciences , Physics
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  • 2
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The zonation and structure of phototrophic microbial mats were studied along two thermal gradients in sulfide-rich hot springs of southwest Iceland. The green, filamentous bacteriumChloroflexus and the unicellular, “high-temperature form” (HTF) ofMastigocladus formed mats growing up to a temperature limit of 62–66°C. The dominant phototrophs wereChloroflexus sp.,Mastigocladus laminosus, andPhormidium laminosum, respectively, at the three temperature intervals: 〉60°C, 60°C to 55–50°C, and 〈55–50°C. AChloroflexus mat growing at 60°C under 60μM H2S was anoxic in the light with the exception of a 0.5 mm thick band of HTFMastigocladus which produced oxygen. The oxygenic photosynthesis of these H2S-sensitive cyanobacteria was probably dependent on a preceding sulfide depletion by the anoxygenicChloroflexus. Measurements of spectral radiance gradients with a fiberoptic microprobe showed maximum light attenuation by carotenoids and bacteriochlorophyllC. AM. laminosus mat growing at 52°C was oxic throughout and showed maximum light attenuation by carotenoids, chlorophyllA, and phycocyanin, but no detectable phycoerythrocyanin absorption.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-184X
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Aerobic respiration with oxygen and anaerobic respiration with nitrate (denitrification) and sulfate (sulfate reduction) were measured during winter and summer in two coastal marine sediments (Denmark). Both aerobic respiration and denitrification took place in the oxidized surface layer, whereas sulfate reduction was most significant in the deeper, reduced sediment. The low availability of nitrate apparently limited the activity of denitrification during summer to less than 0.2 mmoles NO 3 − m−2 day−1, whereas activities of 1.0–3.0 mmoles NO 3 − m−2 day−1 were measured during winter. Sulfate reduction, on the contrary, increased from 2.6–7.6 mmoles SO 4 2− m−2 day−1 during winter to 9.8–15.1 mmoles SO 4 2− m−2 day−1 during summer. The aerobic respiration was high during summer, 135–140 mmoles O2 m−2 day−1, as compared to estimated winter activities of about 30 mmoles O2 m−2 day−1. The little importance of denitrification relative to aerobic respiration and sulfate reduction is discussed in relation to the availability and distribution of oxygen, nitrate, and sulfate in the sediments and to the detritus mineralization.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 38 (1986), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The vertical zonation of light, O2, H2S, pH, and sulfur bacteria was studied in two benthic cyanobacterial mats from hypersaline ponds at Guerrero Negro, baja California, Mexico. The physical-chemical gradients were analyzed in the upper few mm at ≥ 100 μm spatial resolution by microelectrodes and by a fiber optic microprobe. In mats, where oxygen produced by photosynthesis diffused far below the depth of the photic zone, colorless sulfur bacteria (Beggiatoa sp.) were the dominant sulfide oxidizing organisms. In a mat, where the O2–H2S interface was close to the photic zone, but yet received no significant visible light, purple sulfur bacteria (Chromatium sp.) were the dominant sulfide oxidizers. Analysis of the spectral light distribution heare showed that the penetration of only 1% of the incident near-IR light (800–900 nm) into the sulfide zone was sufficient for the development of Chromatium in a narrow band of 300 μm thickness. The balance betweem O2 and light penetration down into the sulfide zone thus deterined in mcro-scale which type of sulfur bacteria becamed dominant.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 86 (1992), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The manufacturing of a new spherical fibre-optic microsensor is described. The microsensor measures scalar irradiance, i.e. the spherically integrated light at a point in space. The light collector of the probe was a 70-μm diffusing sphere cast on the tip of a 125-μm wide optical fibre tapered down to 15–20 μm diametre. The microsensor had an isotropic (±10%) response from −160° to +160° over the whole spectral range from 400–900 nm in air as well as in water. The microsensor was coupled to a sensitive spectroradiometre and the spectral distribution of scalar irradiance in sediments was measured at 100 μm spatial resolution. Light was available for photosynthesis near the sediment surface at a higher intensity and a different spectral composition than could be expected from the illumination. By the combination of oxygen microelectrodes and the present fibre-optic microsensor it is now possible to study the depth distribution of microbenthic photosynthesis in relation to the available photosynthetically active radiation at ≤ 100 μm resolution.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 15 (1994), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The manufacture of a new fiber-optic irradiance microsensor with cosine collecting properties is described. The 70 μm wide light collector, cast on the tip of a tapered optical fiber, consisted of a 50 μm wide flat methacrylate diffuser surrounded by an opaque black coating to prevent light entry from angles 〉 90°. The collector had a directional sensitivity close to the theoretical cosine response, but the sensitivity was lower than the ideal at larger incident angles due to the inherent optical properties of the interface between the collector and the medium. The irradiance microsensor was used concurrently with fiber-optic microsensors for radiance and scalar irradiance in two cyanobacterial mats: a gelatinous laminated mat of Aphanothece sp. and Phormidium sp. and a compact marine intertidal mat of Microcoleus chthonoplastes. At the surface, the ratio of scalar irradiance to downward irradiance depended on spectral absorption characteristics of the sediment and ranged from 1.2 at 430 nm in the Microcoleus mat to 2.0 at 760 nm in the Aphanothece-Phormidium mat. As the light field became more isotropic with depth, the ratio of scalar irradiance to downward irradiance increased at all wavelengths and a maximum of 3.9 was reached in the gelatinous mat at both 675 and 760 nm. The results stress the importance of measuring the right light parameter when photobiological processes in sediments are investigated and the application of scalar irradiance and irradiance as quantitative measures of available light for photosynthesis parameter is discussed. From the distribution of scalar irradiance and irradiance, in situ absorption coefficients were calculated. Within the upper 3 mm of the gelatinous mat, the vertical attenuation coefficients of scalar irradiance, upward radiance and upward irradiance in the Aphanothece-Phormidium mat all increased due to scattering of the light away from the direction of the incident collimated light. Below 3 mm attenuation coefficients for scalar irradiance, irradiance and radiance in the near-infrared spectrum (NIR) became identical indicating that the light field approached an asymptotic radiance distribution. In the compact Microcoleus mat, a near-asymptotic radiance distribution of NIR was obtained at only 0.4 mm depth.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 14 (1994), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract Sulfate reduction was measured with the 35SO42− -tracer technique in slurries of sediment from Aarhus Bay, Denmark, where seasonal temperatures range from 0° to 15°C. The incubations were made at temperatures from 0°C to 80°C in temperature increments of 2°C to search for presence of psychrophilic, mesophilic and thermophilic sulfate-reducing bacteria. Detectable activity was initially only in the mesophilic range, but after a lag phase sulfate reduction by thermophilic sulfate-reducing bacteria were observed. No distinct activity of psychrophilic sulfate-reducing bacteria was detected. Time course experiments showed constant sulfate reduction rates at 4°C and 30°C, whereas the activity at 60°C increased exponentially after a lag period of one day. Thermophilic, endospore-forming sulfate-reducing bacteria, designated strain P60, were isolated and characterized as D esulfotomaculum kuznetsovii. The temperature response of growth and respiration of strain P60 agreed well with the measured sulfate reduction at 50°–70°C. Bacteria similar to strain P60 could thus be responsible for the measured thermophilic activity. The viable population of thermophilic sulfate-reducing bacteria and the density of their spores was determined in most probable number (MPN) dilutions. The density was 2.8·104 cells·.g−1 fresh sediment, and the enumerations suggested that they were all present as spores. This result agrees well with the observed lag period in sulfate reduction above 50°C. No environment with temperatures supporting the growth of these thermophiles is known in the region around Aarhus Bay.
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  • 8
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract The role of complementary spectral utilization of light for the zonation of different groups of oxygenic phototrophic organisms in sediments was studied. The marine sediment was covered by a dense population of diatoms with an underlying population of cyanobacteria. Action spectra for photosynthesis and spectral scalar irradiance, E0, were measured directly in the sediment at a spatial resolution of 0.1 mm by the use of oxygen and light microsensors. The action spectrum for the diatoms was similar to the attenuation spectrum of the scalar irradiance, K0, in the diatom layer with Chl. a and carotenoids being the major photosynthetic pigments. The action spectrum of the cyanobacteria showed photosynthesis maxima at the absorption regions of Chl. a and phycocyanin. The measured depth distribution of spectral scalar irradiance and the action spectra of diatoms and cyanobacteria were used to calculate the spectral quality for photosynthesis of the 400–700 nm light to which the two populations were exposed. This spectral quality was compared to that of the light incident on the sediment surface. Due to preferential extinction of wavelengths, at which their photosynthetically active pigments had maximal absorption, the relative light quality for diatoms was reduced to 85% of the quality of incident light at a similar total quantum flux. This effect was partly due to spectral alterations of light backscattered from the underlying sediment with cyanobacteria. The cyanobacteria at the bottom of the euphotic zone, in contrast, experienced a light spectrum which was favorably altered, to 107% in quality, due to absorption by the overlying diatoms. It was concluded that these changes in spectral light quality can be considered as only one of more factors explaining the zonation of the two phototrophic populations, and that total light intensity and the chemical microenvironment are probably more important factors.
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  • 9
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The availability of fixed inorganic nitrogen (nitrate, nitrite and ammonium) limits primary productivity in many oceanic regions. The conversion of nitrate to N2 by heterotrophic bacteria (denitrification) is believed to be the only important sink for fixed inorganic nitrogen in the ...
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 412 (2001), S. 286-289 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Hydrogen is an ideal energy source, not only for an industrialized society but also for various common bacteria. In the anoxic world of soils and sediments, molecular hydrogen is generated by the bacterial degradation of organic material. The hydrogen is immediately recycled and supplies much of ...
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