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  • Oxford University Press  (54,212)
  • American Meteorological Society
  • Cambridge University Press
  • MDPI Publishing
  • 2005-2009  (60,643)
  • 1970-1974  (19,431)
Collection
Publisher
Years
Year
  • 1
    Unknown
    Cambridge, U.K ; New York, N.Y : Cambridge University Press
    Keywords: Cellular telephone services industry ; Electronic books ; Mobile communication systems, Economic aspects ; Wireless communication systems, Economic aspects
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11564-4
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  • 2
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Shakespeare, William, Tragedies ; Electronic books ; Identity (Psychology) in literature ; Tragedy ; Violence in literature
    Pages: ix, 228 p.
    ISBN: 0-511-11352-8
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  • 3
    Unknown
    New York : Cambridge University Press
    Keywords: Capital market ; Electronic books ; Futures market ; Stock exchanges
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11580-6
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  • 4
    Keywords: Developing countries, Economic policy. ; Federal government, Developing countries.
    Pages: xi, 276 p.
    ISBN: 0-511-11566-0
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  • 5
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Dynamics. ; Kinematics.
    Pages: x, 374 p.
    Edition: 3rd ed
    ISBN: 0-511-11583-0
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  • 6
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Shakespeare, William, Language ; Shakespeare, William, Romeo and Juliet ; Shakespeare, William, Stage history, 1950- ; Shakespeare, William, Stage history, England, London ; Electronic books ; English language, Pronunciation, Early modern, 1500-1700 ; Globe Theatre (London, England : 1996- )
    Pages: xviii, 188 p.
    ISBN: 0-511-11364-1
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  • 7
    Unknown
    Cambridge, U.K ; New York : Cambridge University Press
    Keywords: Electronic books ; Religion, Study and teaching (Higher) ; Theology, Study and teaching (Higher)
    Pages: xvii, 230 p.
    ISBN: 0-511-11355-2
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  • 8
    Unknown
    Cambridge [England] ; New York : Cambridge University Press
    Keywords: Engineering mathematics, Data processing. ; Numerical analysis, Data processing. ; MATLAB.
    Pages: viii, 426 p.
    ISBN: 0-511-12811-8
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  • 9
    Unknown
    New York : Cambridge University Press
    Keywords: Materials, Mechanical properties.
    Pages: xx, 425 p.
    ISBN: 0-511-11575-X
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  • 10
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Autonomy (Psychology) ; Electronic books ; Ethics, Modern
    Notes: Planning agency, autonomous agency / Michael E. Bratman -- Autonomy without free will / Bernard Berofsky -- Autonomy and the paradox of self-creation : infinite regresses, finite selves, and the limits of authenticity / Robert Noggle -- Agnostic autonomism revisited / Alfred R. Mele -- Feminist intuitions and the normative substance of autonomy / Paul Benson -- Autonomy and personal integration / Laura Waddell Ekstrom -- Responsibility, applied ethics, and complex autonomy theories / Nomy Arpaly -- Autonomy and free agency / Marina A.L. Oshana -- The relationship between autonomous and morally responsible agency / Michael McKenna -- Alternative possibilities, personal autonomy, and moral responsibility / Ishtiyaque Haji -- Freedom within reason / Susan Wolf -- Procedural autonomy and liberal legitimacy / John Christman -- The concept of autonomy in bioethics : an unwarranted fall from grace / Thomas May -- Who deserves autonomy, and whose autonomy deserves respect? / Tom L. Beauchamp -- Autonomy, diminished life, and the threshold for use / R.G. Frey
    Pages: ix, 350 p.
    ISBN: 0-511-08224-X
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  • 11
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Kant, Immanuel,, 1724-1804. ; Causation.
    Pages: xi, 451 p.
    ISBN: 0-511-08217-7
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  • 12
    Unknown
    New York : Oxford University Press
    Keywords: Inorganic polymers.
    Pages: xiv, 338 p.
    Edition: 2nd ed
    ISBN: 1-423-71993-X
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  • 13
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Monte Carlo method. ; Statistical physics.
    Pages: xv, 432 p.
    Edition: 2nd ed
    ISBN: 0-511-13098-8
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  • 14
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Equality. ; Minorities. ; Minorities, Civil rights. ; Multiculturalism. ; Social conflict. ; Social groups.
    Pages: xii, 390 p.
    ISBN: 0-511-08065-4
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  • 15
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Frege, Gottlob,, 1848-1925.
    Notes: Biography -- Function and argument -- Sense and reference -- Frege's Begriffsschrift theory of identity -- Concept and object -- Names and descriptions -- Existence -- Thought, truth value and assertion -- Indirect reference -- Through the quotation marks
    Pages: xix, 226 p.
    ISBN: 0-511-10977-6
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  • 16
    Unknown
    Cambridge : Cambridge University Press
    Keywords: Space time codes.
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11562-8
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  • 17
    Publication Date: 2021-06-08
    Description: The Aegean water masses and circulation structure are studied via two large-scale surveys performed during the late winters of 1988 and 1990 by the R/V Yakov Gakkel of the former Soviet Union. The analysis of these data sheds light on the mechanisms of water mass formation in the Aegean Sea that triggered the outflow of Cretan Deep Water (CDW) from the Cretan Sea into the abyssal basins of the eastern Mediterranean Sea (the so-called Eastern Mediterranean Transient). It is found that the central Aegean Basin is the site of the formation of Aegean Intermediate Water, which slides southward and, depending on their density, renews either the intermediate or the deep water of the Cretan Sea. During the winter of 1988, the Cretan Sea waters were renewed mainly at intermediate levels, while during the winter of 1990 it was mainly the volume of CDW that increased. This Aegean water mass redistribution and formation process in 1990 differed from that in 1988 in two major aspects: (i) during the winter of 1990 the position of the front between the Black Sea Water and the Levantine Surface Water was displaced farther north than during the winter of 1988 and (ii) heavier waters were formed in 1990 as a result of enhanced lateral advection of salty Levantine Surface Water that enriched the intermediate waters with salt. In 1990 the 29.2 isopycnal rose to the surface of the central basin and a large volume of CDW filled the Cretan Basin. It is found that, already in 1988, the 29.2 isopycnal surface, which we assume is the lowest density of the CDW, was shallower than the Kassos Strait sill and thus CDW egressed into the Eastern Mediterranean.
    Description: Published
    Description: 1841-1859
    Description: JCR Journal
    Description: reserved
    Keywords: Aegean Sea ; Water Masses ; 03. Hydrosphere::03.03. Physical::03.03.03. Interannual-to-decadal ocean variability
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 18
    Publication Date: 2021-06-01
    Description: Five non-eddy-resolving oceanic general circulation models driven by atmospheric fluxes derived from the NCEP reanalysis are used to investigate the link between the Gulf Stream (GS) variability, the atmospheric circulation, and the Atlantic meridional overturning circulation (AMOC). Despite the limited model resolution, the temperature at the 200-m depth along the mean GS axis behaves similarly in most models to that observed, and it is also well correlated with the North Atlantic Oscillation (NAO), indicating that a northward (southward) GS shift lags a positive (negative) NAO phase by 0–2 yr. The northward shift is accompanied by an increase in the GS transport, and conversely the southward shift with a decrease in the GS transport. Two dominant time scales appear in the response of the GS transport to the NAO forcing: a fast time scale (less than 1 month) for the barotropic component, and a slower one (about 2 yr) for the baroclinic component. In addition, the two components are weakly coupled. The GS response seems broadly consistent with a linear adjustment to the changes in the wind stress curl, and evidence for baroclinic Rossby wave propagation is found in the southern part of the subtropical gyre. However, the GS shifts are also affected by basin-scale changes in the oceanic conditions, and they are well correlated in most models with the changes in the AMOC. A larger AMOC is found when the GS is stronger and displaced northward, and a higher correlation is found when the observed changes of the GS position are used in the comparison. The relation between the GS and the AMOC could be explained by the inherent coupling between the thermohaline and the wind-driven circulation, or by the NAO variability driving them on similar time scales in the models.
    Description: This research was supported by the PREDICATE project of the European Community, and for M. Bentsen by the Research Council of Norway through RegClim, NOClim, and the Programme of Supercomputing.
    Description: Published
    Description: 2119–2135
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: ocean modelling ; gulf stream variability ; 03. Hydrosphere::03.01. General::03.01.03. Global climate models
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 19
    Publication Date: 2020-11-19
    Description: A land surface model (LSM) has been included in the ECMWF Hamburg version 4 (ECHAM4) atmospheric general circulation model (AGCM). The LSM is an early version of the Organizing Carbon and Hydrology in Dynamic Ecosystems (ORCHIDEE) and it replaces the simple land surface scheme previously included in ECHAM4. The purpose of this paper is to document how a more exhaustive consideration of the land surface–vegetation processes affects the simulated boreal summer surface climate. To investigate the impacts on the simulated climate, different sets of Atmospheric Model Intercomparison Project (AMIP)-type simulations have been performed with ECHAM4 alone and with the AGCM coupled with ORCHIDEE. Furthermore, to assess the effects of the increase in horizontal resolution the coupling of ECHAM4 with the LSM has been implemented at different horizontal resolutions. The analysis reveals that the LSM has large effects on the simulated boreal summer surface climate of the atmospheric model. Considerable impacts are found in the surface energy balance due to changes in the surface latent heat fluxes over tropical and midlatitude areas covered with vegetation. Rainfall and atmospheric circulation are substantially affected by these changes. In particular, increased precipitation is found over evergreen and summergreen vegetated areas. Because of the socioeconomical relevance, particular attention has been devoted to the Indian summer monsoon (ISM) region. The results of this study indicate that precipitation over the Indian subcontinent is better simulated with the coupled ECHAM4–ORCHIDEE model compared to the atmospheric model alone.
    Description: Published
    Description: 255–278
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: partially_open
    Keywords: Land Atmosphere interactions ; Global climate models ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 20
    Publication Date: 2017-04-04
    Description: In this paper results from the application of an ocean data assimilation (ODA) system, combining a multivariate reduced-order optimal interpolator (OI) scheme with a global ocean general circulation model (OGCM), are described. The present ODA system, designed to assimilate in situ temperature and salinity observations, has been used to produce ocean reanalyses for the 1962–2001 period. The impact of assimilating observed hydrographic data on the ocean mean state and temporal variability is evaluated. A special focus of this work is on the ODA system skill in reproducing a realistic ocean salinity state. Results from a hierarchy of different salinity reanalyses, using varying combinations of assimilated data and background error covariance structures, are described. The impact of the space and time resolution of the background error covariance parameterization on salinity is addressed.
    Description: This work has been funded by the ENACT Project (Contract EVK2-CT2001-00117) for A. Bellucci and P. Di Pietro, and partially by the ENSEMBLES Project (Contract GOCE-CT-2003-505539) for A. Bellucci.
    Description: Published
    Description: 3785-3807
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: ocean modelling ; data assimilation ; reanalysis ; upper ocean variability ; temperature ; Salinity ; 03. Hydrosphere::03.01. General::03.01.04. Ocean data assimilation and reanalysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
    Publication Date: 2017-04-04
    Description: The effect of horizontal resolution on tropical variability is investigated within the modified SINTEX model, SINTEX-F, developed jointly at INGV, IPSL and at the Frontier Research System. The horizontal resolutions T30 and T106 are investigated in terms of the coupling characteristics, frequency and variability of the tropical ocean-atmosphere interactions. It appears that the T106 resolution is generally beneficial even if it does not eliminate all the major systematic errors of the coupled model. There is an excessive shift west of the cold tongue and ENSO variability, and high resolution has also a somewhat negative impact to the variability in the East Indian Ocean. A dominant two-year peak for the NINO3 variabilty in the T30 model is moderated in the T106 as it shifts to longer time scale. At high resolution new processes come into play, as the coupling of tropical instability waves, the resolution of coastal flows at the Pacific Mexican coasts and improved coastal forcing along the coast of South America. The delayed oscillator seems the main mechanism that generates the interannual variability in both models, but the models realize it in different ways. In the T30 model it is confined close to the equator, involving relatively fast equatorial and near-equatorial modes, in the high resolution, it involves a wider latitudinal region and slower waves. It is speculated that the extent of the region that is involved in the interannual variability may be linked to the time scale of the variability itself.
    Description: This research was partially supported by the Italy–USA Cooperation Program of the Italian Ministry of Environment and by the EU projects ENSEMBLES and DYNAMITE.
    Description: Published
    Description: 730-750
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: coupled models ; tropical variability ; ENSO system ; 03. Hydrosphere::03.01. General::03.01.03. Global climate models
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 22
    Publication Date: 2017-04-04
    Description: Twenty eruptive events from the Northeast Crater of Stromboli volcano recorded by a thermal monitoring camera in early 2004 were analysed in order to understand the eruptive dynamics. Selected eventswere chosen to be typical of explosions that characterize the steady activity of Stromboli in terms of jet height and duration. Most of the explosions consisted of clast-rich single bursts, originating from the same vent inside the Northeast Crater. Conspicuous ash emission was scarce. Eruptions were preceded by the flashing of a perturbation wave characterized by low temperatures and an average propagation velocity of about 35–100 m s−1. This perturbation was thought to be caused by the bursting of the gas slug at the bottom of the crater and is interpreted as an air wave. This was immediately followed by the expansion of a jet of ‘hot’ gas and particles, at a velocity of 35–75 m s−1. Ejecta coarser than 138 cm appeared ∼1.6–2 s after the onset of the explosion, moving at a variable velocity (30–60 m s−1). Eruptive events were either vertical or inclined 7–13◦ towards the NNW. This inclination is thought to be a consequence either of the morphology of the conduit, following modest rock falls that partially obstructed the uppermost part of the crater, or of the displacement of the internal conduit due to the explosive activity of the volcano. The instability of the summit area is a further possible cause of the deformation of the conduit.
    Description: This work was partially funded by the Istituto Nazionale di Geofisica e Vulcanologia and the Dipartimento della Protezione Civile, Italy, project INGVDPC V2
    Description: Published
    Description: 591–601
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: 1.10. TTC - Telerilevamento
    Description: 3.6. Fisica del vulcanismo
    Description: JCR Journal
    Description: reserved
    Keywords: explosive dynamic ; thermal video monitoring ; volcano-tectonic structures ; volcano collapses ; Stromboli ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.11. Instruments and techniques ; 04. Solid Earth::04.07. Tectonophysics::04.07.99. General or miscellaneous ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics ; 04. Solid Earth::04.07. Tectonophysics::04.07.08. Volcanic arcs ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.02. Experimental volcanism ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.04. Thermodynamics ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.02. Data dissemination::05.02.99. General or miscellaneous ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions ; 05. General::05.08. Risk::05.08.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 23
    Publication Date: 2017-04-04
    Description: The Indian Summer Monsoon (ISM) is one of the main components of the Asian summer monsoon. It is well known that one of the starting mechanisms of a summer monsoon is the thermal contrast between land and ocean and that sea surface temperature (SST) and moisture are crucial factors for its evolution and intensity. The Indian Ocean, therefore, may play a very important role in the generation and evolution of the ISM itself. A coupled general circulation model, implemented with a high resolution atmospheric component, appears to be able to simulate the Indian summer monsoon in a realistic way. In particular, the features of the simulated ISM variability are similar to the observations. In this study, the relationships between ISM and Tropical Indian Ocean (TIO) SST anomalies are investigated, as well as the ability of the coupled model to capture those connections. The recent discovery of the Indian Ocean Dipole Mode (IODM) may suggest new perspectives in the relationship between ISM and TIO SST. A new statistical technique, the Coupled Manifold, is used to investigate the TIO SST variability and its relation with the Tropical Pacific Ocean (TPO). The analysis shows that the SST variability in the TIO contains a significant portion that is independent from the TPO variability. The same technique is used to estimate the amount of Indian rainfall variability that can be explained by the Tropical Indian Ocean SST. Indian Ocean SST anomalies are separated in a part remotely forced from the Tropical Pacific Ocean variability and a part independent from that. The relationships between the two SSTA components and the Indian monsoon variability are then investigated in detail.
    Description: Published
    Description: 3083-3105
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: Indian Ocean ; monsoon ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
    Publication Date: 2017-04-04
    Description: An assessment of the present European operational marine monitoring and forecasting systems shows how observations, atmospheric forcing fields and ocean models combine to make useful oceanographic products possible.
    Description: Published
    Description: 1081-1090
    Description: open
    Keywords: MARINE ENVIRONMENT ; 03. Hydrosphere::03.01. General::03.01.05. Operational oceanography
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 25
    Publication Date: 2017-04-04
    Description: Ensemble experiments are performed with five coupled atmosphere–ocean models to investigate the potential for initial-value climate forecasts on interannual to decadal time scales. Experiments are started from similar model-generated initial states, and common diagnostics of predictability are used. We find that variations in the ocean meridional overturning circulation (MOC) are potentially predictable on interannual to decadal time scales, a more consistent picture of the surface temperature impact of decadal variations in the MOC is now apparent, and variations of surface air temperatures in the North Atlantic Ocean are also potentially predictable on interannual to decadal time scales, albeit with potential skill levels that are less than those seen for MOC variations. This intercomparison represents a step forward in assessing the robustness of model estimates of potential skill and is a prerequisite for the development of any operational forecasting system.
    Description: Published
    Description: 1195-1203
    Description: JCR Journal
    Description: reserved
    Keywords: Decadal Climate ; North Atlantic ; 03. Hydrosphere::03.01. General::03.01.03. Global climate models ; 03. Hydrosphere::03.02. Hydrology::03.02.05. Models and Forecasts ; 03. Hydrosphere::03.03. Physical::03.03.03. Interannual-to-decadal ocean variability
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
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    American Meteorological Society
    In:  EPIC3Journal of Atmospheric and Oceanic Technology, American Meteorological Society, 25(2), pp. 149-166, ISSN: 0739-0572
    Publication Date: 2019-07-17
    Description: The accuracy of all types of Vaisala radiosondes and two types of Snow White chilled-mirror hygrosondes was assessed in an intensive in situ comparison with reference hygrometers. Fourteen nighttime reference comparisons were performed to determine a working reference for the radiosonde comparisons. These showed that the night version of the Snow White agreed best with the references [i.e., the NOAA frost-point hygrometer (FPH) and University of Colorado cryogenic frost-point hygrometer (CFH)], but that the daytime version had severe problems with contamination in the humid upper troposphere. Since the RS92 performance was superior to the other radiosondes and to the day version of the Snow White, it was selected to be the working reference. According to the reference comparison, the RS92 has no bias in the mid- and lower troposphere, with deviations 〈±5% in relative humidity (RH). In the upper troposphere, the RS92 has a 5% RH wet bias, which is partly due to the RS92 time lag error and the termination of the heating cycle. It was shown that the time lag effects relating to Vaisala radiosondes can be corrected. Because these were nighttime comparisons, they can be considered to be free from solar radiation effects. Neither the radiosondes nor the Snow White succeeded in reproducing reference class hygrometer profiles in the stratosphere. According to the 29 radiosonde intercomparisons, the RS92 and the modified RS90 (FN) had the best mutual agreement and no bias. The disagreement is largest (〈±10% RH) at low temperatures (T ≪ −30°C), where the FN underestimated (overestimated) in high (low) ambient RH. In comparison with the RS92, the RS90 had a semilinearly increasing wet bias with decreasing temperature, where the bias was 10% RH at −60°C. The RS80-A suffers from a large temperature-dependent dry bias in high RH conditions, being over 30% RH at −60°C and 5% RH near 0°C. The RS80-A dry bias can be almost totally removed with the correction algorithm by Leiterer et al., which was chosen as the best available. The other approach tested tends to overcorrect in high RH conditions when T 〈 −50°C. For T 〉 −30°C it is ineffective and does not correct the RS80-A dry bias in high ambient RH.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 27
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    American Meteorological Society
    Publication Date: 2021-05-19
    Description: In this study we show a teleconnection pattern relating Outgoing Longwave Radiation (OLR) anomalies over the western Pacific Ocean and sea surface temperature anomalies (SSTA) over the western Indian Ocean over two seasons (Sept-Oct-Nov and Dec-Jan-Feb) at zero lag from observations and atmospheric general circulation model (AGCM) integrations. This teleconnection pattern suggests that a positive SSTA in Sept-Oct-Nov (SON) and Dec-Jan-Feb (DJF) seasons over the western Indian Ocean increases the contemporaneous positive OLR anomalies over the western Pacific Ocean. This teleconnection pattern is also simulated by the Center for Ocean-Land- Atmosphere studies (COLA) AGCM forced with observed SST’s. From the experimental COLA AGCM runs (wherein the Pacific Ocean SST variability is suppressed except for the climatological annual cycle) it is diagnosed that the interannual variability of OLR over the western Pacific Ocean persists because of this teleconnection. In relation to this teleconnection pattern it is shown that there is a significant linear response of the SON and DJF equatorial zonal wind anomaly over the Pacific Ocean to contemporaneous SSTA over the western Indian Ocean which is comparable to that of the eastern and western Pacific Oceans. The experimental AGCM runs clearly show that this response of the equatorial zonal wind anomaly to the western Indian Ocean forcing shifts westward towards the Indian Ocean in the absence of Pacific SST variability.
    Description: Published
    Keywords: Sea surface temperature ; Atmospheric conditions ; Teleconnections
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
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  • 28
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    American Meteorological Society
    Publication Date: 2021-05-19
    Description: Skill in ensemble-mean dynamical seasonal climate hindcasts with a coupled land-atmosphere model and specified observed sea surface temperature is compared to that for long multi-decade integrations of the same model where the initial conditions are far removed from the seasons of validation. The evaluations are performed for surface temperature and compared among all seasons. Skill is found to be higher in the seasonal simulations than the multi-decadal integrations except during boreal winter. The higher skill is prominent even beyond the first month when the direct influence of the atmospheric initial state elevates model skill. Skill is generally found to be lowest during the winter season for the dynamical seasonal forecasts, equal to that of the long integrations, which show some of the highest skill during winter. The reason for the differences in skill during the non-winter months is attributed to the severe climate drift in the long simulations, manifest through errors in downward fluxes of water and energy over land and evident in soil wetness. The drift presses the land surface to extreme dry or wet states over much of the globe, into a range where there is little sensitivity of evaporation to fluctuations in soil moisture. Thus, the land-atmosphere feedback is suppressed, which appears to lessen the model’s ability to respond correctly over land to remote ocean temperature anomalies.
    Description: Center for Ocean-Land-Atmosphere Studies
    Description: Published
    Keywords: Atmosphere-ocean system
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
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  • 29
    Publication Date: 2021-05-19
    Description: In this paper, the circulations driven by deep heating and shallow heating are investigated through analytically solving a set of linear equations and examining circulations simulated by a dry primitive equation model. Special emphasis is placed on the low-level mass (moisture) convergence associated with the forced circulation and the maintenance of the shallow and deep heat sources. It is found that the forced circulation driven by shallow heating is more likely to be trapped horizontally near the heating area but relatively extended in the vertical. As a consequence, diabatic heating can not balance adiabatic cooling due to upward motion. At the levels slightly above the top of the heating, a negative vertical gradient of temperature perturbation appears. For the atmosphere driven by deep heating, however, the temperature perturbation cannot accumulate because the heating signals propagate away very fast, allowing an approximate equilibrium between the convective diabatic heating and adiabatic cooling due to upward motion. The converged moisture associated with circulation driven by shallow heating exceeds the amount needed to maintain the heat source. However, the circulation driven by deep heating does not feed back effectively to the moisture convergence, and thus can not be self-sustaining.
    Description: Center for Ocean-Land-Atmosphere Studies - Calverton
    Description: Published
    Keywords: Atmospheric circulation
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
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  • 30
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 403 (2000): 37-65, doi:10.1017/S0022112099006916.
    Description: The dynamics of expanding domes of isothermal lava are studied by treating the lava as a viscoplastic material with the Herschel–Bulkley constitutive law. Thin-layer theory is developed for radially symmetric extrusions onto horizontal plates. This provides an evolution equation for the thickness of the fluid that can be used to model expanding isothermal lava domes. Numerical and analytical solutions are derived that explore the effects of yield stress, shear thinning and basal sliding on the dome evolution. The results are briefly compared with an experimental study. It is found that it is difficult to unravel the combined effects of shear thinning and yield stress; this may prove important to studies that attempt to infer yield stress from morphology of flowing lava.
    Description: The financial support of an EPSRC Advanced Fellowship is gratefully acknowledged by R.V. C. N. J. B. was partially supported by the NSF Grant OCE-9616017 and an EPSRC Visiting Fellowship Grant GR/M50409.
    Keywords: Isothermal lava domes
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  • 31
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Parasitology 128 (2004): 577-584, doi:10.1017/S0031182004005025.
    Description: Human serum high-density lipoprotein (HDL) is necessary and sufficient for the short-term maintenance of Plasmodium falciparum in in vitro culture. However, at high concentrations it is toxic to the parasite. A heat-labile component is apparently responsible for the stage-specific toxicity to parasites within infected erythrocytes 12–42 h after invasion, i.e. during trophozoite maturation. The effects of HDL on parasite metabolism (as determined by nucleic acid synthesis) are evident at about 30 h after invasion. Parasites treated with HDL show gross abnormalities by light and electron microscopy.
    Description: Professor Hajduk was supported by NIH. Professor Day was supported by a Research Leave Fellowship from The Wellcome Trust. Dr Imrie and Ms Carter were supported by Programme Grant funding awarded to Professor Day from The Wellcome Trust. Dr Ferguson was supported by an equipment grant from The Wellcome Trust.
    Keywords: Plasmodium falciparum ; High density lipoprotein
    Repository Name: Woods Hole Open Access Server
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  • 32
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Geological Magazine 141 (2004): 195-207, doi:10.1017/S001675680400891X.
    Description: Because magmatism associated with subduction is thought to be the principal source for continental crust generation, assessing the relative contribution of pre-existing (subducted and assimilated) continental material to arc magmatism in accreted arcs is important to understanding the origin of continental crust. We present a detailed Nd isotopic stratigraphy for volcanic and volcaniclastic formations from the South Mayo Trough, an accreted oceanic arc exposed in the western Irish Caledonides. These units span an arc–continent collision event, the Grampian (Taconic) Orogeny, in which an intra-oceanic island arc was accreted onto the passive continental margin of Laurentia starting at [similar] 475 Ma (Arenig). The stratigraphy corresponding to pre-, syn- and post-collisional volcanism reveals a progression of [varepsilon]Nd(t) from strongly positive values, consistent with melt derivation almost exclusively from oceanic mantle beneath the arc, to strongly negative values, indicating incorporation of continental material into the melt. Using [varepsilon]Nd(t) values of meta-sediments that represent the Laurentian passive margin and accretionary prism, we are able to quantify the relative proportions of continent-derived melt at various stages of arc formation and accretion. Mass balance calculations show that mantle-derived magmatism contributes substantially to melt production during all stages of arc–continent collision, never accounting for less than 21% of the total. This implies that a significant addition of new, rather than recycled, continental crust can accompany arc–continent collision and continental arc magmatism.
    Keywords: Grampian Orogeny ; Western Ireland ; Continental crust ; Nd isotopes ; Laurentia ; Iapetus Ocean
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  • 33
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 574 (2007): 465-493, doi:10.1017/S0022112006004216.
    Description: Acoustic Doppler velocity profiler (ADVP) measurements of instantaneous three-dimensional velocity profiles over the entire turbulent boundary layer height, δ, of rough-bed open-channel flows at moderate Reynolds numbers show the presence of large scale coherent shear stress structures (called LC3S herein) in the zones of uniformly retarded streamwise momentum. LC3S events over streamwise distances of several boundary layer thicknesses dominate the mean shear dynamics. Polymodal histograms of short streamwise velocity samples confirm the subdivision of uniform streamwise momentum into three zones also observed by Adrian et al. (J. Fluid Mech., vol. 422, 2000, p. 1). The mean streamwise dimension of the zones varies between 1δ and 2.5δ. In the intermediate region (0.2〈z/δ〈0.75), the contribution of conditionally sampled u'w' events to the mean vertical turbulent kinetic energy (TKE) flux as a function of threshold level H is found to be generated by LC3S events above a critical threshold level Hmax for which the ascendant net momentum flux between LC3S of ejection and sweep types is maximal. The vertical profile of Hmax is nearly constant over the intermediate region, with a value of 5 independent of the flow conditions. Very good agreement is found for all flow conditions including the free-stream shear flows studied in Adrian et al. (2000). If normalized by the squared bed friction velocity, the ascendant net momentum flux containing 90% of the mean TKE flux is equal to 20% of the shear stress due to bed friction. In the intermediate region this value is nearly constant for all flow conditions investigated herein. It can be deduced that free-surface turbulence in open-channel flows originates from processes driven by LC3S, associated with the zonal organization of streamwise momentum. The good agreement with mean quadrant distribution results in the literature implies that LC3S identified in this study are common features in the outer region of shear flows.
    Description: The study was supported by the Swiss National Foundation for Scientific Research for the experimental part (grant 2100 050739) and the French National Center for Scientific Research (CNRS) for the data analysis and interpretation.
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  • 34
    Publication Date: 2022-05-25
    Description: © 2008 The Authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License. The definitive version was published in Nucleic Acids Research 37 (2009): D526-D530, doi:10.1093/nar/gkn631.
    Description: GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.
    Description: Federal funds from the National Institute of Allergy and Infectious Diseases; Department of Health and Human Services, National Institutes of Health (HHSN266200400037C). Funding for open access charge: National Institutes of Health (HHSN266200400037C).
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  • 35
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2005. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 540 (2005): 49-73, doi:10.1017/S002211200500577X.
    Description: Circulation driven by horizontal differential heating is studied, using a double-walled Plexiglas tank (20×15×2.5 cm3) filled with salt water. For instances of heating/cooling from above and below, results indicate that there is always quasi-equilibrium circulation. In contrast to most previous results from experimental/ numerical studies, circulation in our experiments appears in the form of a shallow cell adjacent to the boundary of thermal forcing. The non-dimensional stream-function maximum confirms the 1/5-power law of Rossby, Ψ ∼Ra1/5 L . Dissipation rate measured in the experiments appears to be consistent with theory. For cases of heating/cooling from a sloping bottom, circulation is similar to cases with a flat bottom; circulation is strong if heating is below cooling, but it is rather weak if heating is above cooling. Nevertheless, circulation in all cases is visible to the naked eye.
    Description: W. W. was supported by The National Natural Science Foundation of China through grant 40476010 and the Research Fund for the Doctoral Program of Higher Education through grant 20030423011. R. X. H. was supported by the National Science Foundation through grant OCE-0094807 and the National Aero- Space Administration through Contract 1229833 (NRA-00-OES-05) to the Woods Hole Oceanographic Institution.
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  • 36
    facet.materialart.
    Unknown
    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 602 (2008): 241-266, doi:10.1017/S0022112008000827.
    Description: The stability of a hydraulically driven sill flow in a rotating channel with smoothly varying cross-section is considered. The smooth topography forces the thickness of the moving layer to vanish at its two edges. The basic flow is assumed to have zero potential vorticity, as is the case in elementary models of the hydraulic behaviour of deep ocean straits. Such flows are found to always satisfy Ripa's necessary condition for instability. Direct calculation of the linear growth rates and numerical simulation of finite-amplitude behaviour suggests that the flows are, in fact, always unstable. The growth rates and nonlinear evolution depend largely on the dimensionless channel curvature κ=2αg′/f2, where 2α is the dimensional curvature, g′ is the reduced gravity, and f is the Coriolis parameter. Very small positive (or negative) values of κ correspond to dynamically wide channels and are associated with strong instability and the breakup of the basic flow into a train of eddies. For moderate or large values of κ, the instability widens the flow and increases its potential vorticity but does not destroy its character as a coherent stream. Ripa's condition for stability suggests a theory for the final width and potential vorticity that works moderately well. The observed and predicted growth in these quantities are minimal for κ≥1, suggesting that the zero-potential-vorticity approximation holds when the channel is narrower than a Rossby radius based on the initial maximum depth. The instability results from a resonant interaction between two waves trapped on opposite edges of the stream. Interactions can occur between two Kelvin-like frontal waves, between two inertia–gravity waves, or between one wave of each type. The growing disturbance has zero energy and extracts zero energy from the mean. At the same time, there is an overall conversion of kinetic energy to potential energy for κ〉0, with the reverse occurring for κ〈0. When it acts on a hydraulically controlled basic state, the instability tends to eliminate the band of counterflow that is predicted by hydraulic theory and that confounds hydraulic-based estimates of volume fluxes in the field. Eddy generation downstream of the controlling sill occurs if the downstream value of κ is sufficiently small.
    Description: This work was supported by the National Science Foundation (Grant OCE- 0525729).
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  • 37
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 516 (2004): 83-113, doi:10.1017/S0022112004000473.
    Description: Oceanic observations indicate that abyssal mixing tends to be localized to regions of rough topography. How localized mixing interacts with the ambient fluid in a stratified, rotating system is an open question. To gain insight into this complicated process laboratory experiments are used to explore the interaction of mechanically induced boundary mixing and an interior body of linearly stratified rotating fluid. Turbulence is generated by a single vertically oscillating horizontal bar of finite horizontal extent, located at mid-depth along the tank wall. The turbulence forms a region of mixed fluid which quickly reaches a steady-state height and collapses into the interior. The mixed-layer thickness, $h_m\,{\sim}\,\gamma ({\omega}/{N})^{1/2}$, is spatially uniform and independent of the Coriolis frequency $f$. $N$ is the initial buoyancy frequency, $\omega$ is the bar oscillation frequency, and $\gamma\,{\approx}\,1$ cm is an empirical constant determined by the bar geometry. Surprisingly, the export of mixed fluid does not occur as a boundary current along the tank perimeter. Rather, mixed fluid intrudes directly into the interior as a radial front of uniform height, advancing with a speed comparable to a gravity current. The volume of mixed fluid grows linearly with time, $V\,{\propto}\,({N}/{f})^{3/2}h_m^3 \textit{ft}$, and is independent of the lateral extent of the mixing bar. Entrainment into the turbulent zone occurs principally through horizontal flows at the level of the mixing that appear to eliminate export by a geostrophic boundary flow. The circulation patterns suggest a model of unmixed fluid laterally entrained at velocity $u_e \,{\sim}\,Nh_m $ into the open sides of a turbulent zone with height $h_{m}$ and a length, perpendicular to the boundary, proportional to $L_f \,{\equiv}\,\gamma ({\omega}/{f})^{1/2}$. Here $L_{f}$ is an equilibrium length scale associated with rotational control of bar-generated turbulence. The model flux of exported mixed fluid $Q\,{\sim}\,h_m L_f u_e$ is constant and in agreement with the experiments.
    Description: This work was supported by the Ocean Ventures Fund, the Westcott Fund and the WHOI Academic Programs Office. Financial support was also provided by the National Science Foundation through grant OCE-9616949.
    Keywords: Abyssal mixing ; Stratified rotating system
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  • 38
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 506 (2004): 217-244, doi:10.1017/S0022112004008572.
    Description: The effect of both vertical and horizontal components of the Earth's rotation on plumes during deep convection in the ocean is studied. In the laboratory, the misalignment, characterized by the angle $\alpha$, between the buoyancy force (‘effective’ free-fall acceleration ${\bm g}_e$) and the rotation axis ${\bm \Omega}$ is produced by using the centrifugal force: an experimental tank was placed at a large distance from the centre of the turntable. The mathematical analogy between the laboratory model and the oceanic environment is presented. For $\alpha\,{=}\,30^\circ$, a number of laboratory experiments spanning a wide range of the buoyancy flux parameter, and correspondingly Reynolds number, is used to illustrate the development of the convective plume from a point source in regimes ranging from weakly to highly turbulent. New features of the flow, as compared to $\alpha\,{=}\,0$, are documented and explained. The incoming heavier dyed fluid jet disintegrates into fast-sinking coherent blobs (in a low-Reynolds-number regime) or turbulent billows (in a high-Reynolds-number regime) and a more diffuse cloud of highly diluted dyed water. An analysis of the forces acting on an ellipsoid moving in a rotating fluid with the main balance including the buoyancy, Coriolis forces, and the hydrodynamic reaction due to generation of inertial waves correctly predicts the trajectory of a descending blob. It also explains the tendency of the plume to develop in the direction intermediate between ${\bm g}_e$ and ${\bm \Omega}$ and to shift ‘eastward’ (lagging the rotation of the centrifuge) if the plume is envisaged as an ensemble of blobs. The stretching of the highly diluted dyed water along the absolute vorticity tubes with simultaneous shearing by horizontal quasi-two-dimensional flow produces conspicuous tilted structures or tilted Taylor ‘ink walls’. The misalignment between ${\bm g}_e$ and ${\bm \Omega}$ enhances the turbulent mixing and development of tilted structures by breaking the symmetry and producing motions directed away from the rotation axis. We argue that the conditions at the sites of ocean deep convection are favourable for the development of tilted structures because of the smallness of the Rossby number and an extreme homogenization of the mixed layer. We hypothesize that the homogenized sublayers observed within actively convecting regions in the ocean may not be horizontal, but in fact analogous to the tilted ‘ink walls’ observed in the laboratory experiments and that they represent the internal structure of a plume on horizontal scales smaller than its depth.
    Description: This work was supported by a grant from The Andrew W. Mellon Foundation Endowed Fund for Innovative Research and by the National Science Foundation grant OCE-0116910.
    Keywords: Convective plumes
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  • 39
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 404 (2000):117-149, doi:10.1017/S0022112099007065.
    Description: In order to gain insight into the hydraulics of rotating-channel flow, a set of initial-value problems analogous to Long's towing experiments is considered. Specifically, we calculate the adjustment caused by the introduction of a stationary obstacle into a steady, single-layer flow in a rotating channel of infinite length. Using the semigeostrophic approximation and the assumption of uniform potential vorticity, we predict the critical obstacle height above which upstream influence occurs. This height is a function of the initial Froude number, the ratio of the channel width to an appropriately defined Rossby radius of deformation, and a third parameter governing how the initial volume flux in sidewall boundary layers is partitioned. (In all cases, the latter is held to a fixed value specifying zero flow in the right-hand (facing downstream) boundary layer.) The temporal development of the flow according to the full, two-dimensional shallow water equations is calculated numerically, revealing numerous interesting features such as upstream-propagating shocks and separated rarefying intrusions, downstream hydraulic jumps in both depth and stream width, flow separation, and two types of recirculations. The semigeostrophic prediction of the critical obstacle height proves accurate for relatively narrow channels and moderately accurate for wide channels. Significantly, we find that contact with the left-hand wall (facing downstream) is crucial to most of the interesting and important features. For example, no instances are found of hydraulic control of flow that is separated from the left-hand wall at the sill, despite the fact that such states have been predicted by previous semigeostrophic theories. The calculations result in a series of regime diagrams that should be very helpful for investigators who wish to gain insight into rotating, hydraulically driven flow.
    Description: The authors have been supported by the National Science Foundation through Grants (OCE-9810599 for L.J.P. and K.R.H. and OCE-9711186 for EPC). L.J.P. also received support from the Office of Naval Research under Grant N00014-95-1-0456 and K.R.H. under grant N00014-93-1-0263.
    Keywords: Rotating-channel flow ; Hydraulically driven flow
    Repository Name: Woods Hole Open Access Server
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  • 40
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 514 (2004): 107-119, doi:10.1017/S0022112004000126.
    Description: While acoustic scatter from oceanic turbulence is sensitive to temperature–salinity covariations, there are unfortunately no published measurements of the turbulent temperature–salinity co-spectrum. Several models have been proposed for the form of the co-spectrum of two scalars in turbulence, but they all produce unsatisfactory results when applied to the turbulent scattering equations (either predicting negative scattering cross-sections in some regimes or predicting implausible levels of correlation between temperature and salinity at some scales). A new model is proposed and shown to give physically plausible scattering predictions in all density regimes. High-frequency acoustic data illustrate the importance of the co-spectrum for acoustic scattering, but were collected in a density regime where there is little difference between the co-spectrum models.
    Description: This work was supported by NSERC and by ONR under grant #N00014-93-1-0362.
    Keywords: Oceanic turbulence ; Co-spectrum ; Temperature–salinity covariations
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  • 41
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2002. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 452 (2002): 97-121, doi:10.1017/S0022112001006668.
    Description: Buoyancy-driven surface currents were generated in the laboratory by releasing buoyant fluid from a source adjacent to a vertical boundary in a rotating container. Different bottom topographies that simulate both a continental slope and a continental ridge were introduced in the container. The topography modified the flow in comparison with the at bottom case where the current grew in width and depth until it became unstable once to non-axisymmetric disturbances. However, when topography was introduced a second instability of the buoyancy-driven current was observed. The most important parameter describing the flow is the ratio of continental shelf width W to the width L* of the current at the onset of the instability. The values of L* for the first instability, and L*[minus sign]W for the second instability were not influenced by the topography and were 2–6 times the Rossby radius. Thus, the parameter describing the flow can be expressed as the ratio of the width of the continental shelf to the Rossby radius. When this ratio is larger than 2–6 the second instability was observed on the current front. A continental ridge allowed the disturbance to grow to larger amplitude with formation of eddies and fronts, while a gentle continental slope reduced the growth rate and amplitude of the most unstable mode, when compared to the continental ridge topography. When present, eddies did not separate from the main current, and remained near the shelf break. On the other hand, for the largest values of the Rossby radius the first instability was suppressed and the flow was observed to remain stable. A small but significant variation was found in the wavelength of the first instability, which was smaller for a current over topography than over a flat bottom.
    Description: Partial support for C.C. was provided by a TMR fellowship, MAS3-CT96-5017.
    Keywords: Buoyancy-driven currents ; Bottom topography
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  • 42
    Publication Date: 2022-05-25
    Description: © 2007 The Author et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/ by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Nucleic Acids Research 35 (2007): 2107-2115, doi:10.1093/nar/gkm049.
    Description: Trypanosomatids contain an unusual DNA base J (ß-D-glucosylhydroxymethyluracil), which replaces a fraction of thymine in telomeric and other DNA repeats. To determine the function of base J, we have searched for enzymes that catalyze J biosynthesis. We present evidence that a protein that binds to J in DNA, the J-binding protein 1 (JBP1), may also catalyze the first step in J biosynthesis, the conversion of thymine in DNA into hydroxymethyluracil. We show that JBP1 belongs to the family of Fe2+ and 2-oxoglutarate-dependent dioxygenases and that replacement of conserved residues putatively involved in Fe2+ and 2-oxoglutarate-binding inactivates the ability of JBP1 to contribute to J synthesis without affecting its ability to bind to J-DNA. We propose that JBP1 is a thymidine hydroxylase responsible for the local amplification of J inserted by JBP2, another putative thymidine hydroxylase.
    Description: This work was funded by a grant from the Netherlands Organization for Scientific Research and Chemical Sciences (NWO-CW) to P.B., NIH grant A1063523 to R.S. and NIH grant GM063584 to R.P.H.
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  • 43
    Publication Date: 2022-05-25
    Description: © 2006 The Authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Molecular Biology and Evolution 23(2006): 2090-2100, doi:10.1093/molbev/msl080.
    Description: We have characterized the relationship between accurate phylogenetic reconstruction and sequence similarity, testing whether high levels of sequence similarity can consistently produce accurate evolutionary trees. We generated protein families with known phylogenies using a modified version of the PAML/EVOLVER program that produces insertions and deletions as well as substitutions. Protein families were evolved over a range of 100–400 point accepted mutations; at these distances 63% of the families shared significant sequence similarity. Protein families were evolved using balanced and unbalanced trees, with ancient or recent radiations. In families sharing statistically significant similarity, about 60% of multiple sequence alignments were 95% identical to true alignments. To compare recovered topologies with true topologies, we used a score that reflects the fraction of clades that were correctly clustered. As expected, the accuracy of the phylogenies was greatest in the least divergent families. About 88% of phylogenies clustered over 80% of clades in families that shared significant sequence similarity, using Bayesian, parsimony, distance, and maximum likelihood methods. However, for protein families with short ancient branches (ancient radiation), only 30% of the most divergent (but statistically significant) families produced accurate phylogenies, and only about 70% of the second most highly conserved families, with median expectation values better than 10–60, produced accurate trees. These values represent upper bounds on expected tree accuracy for sequences with a simple divergence history; proteins from 700 Giardia families, with a similar range of sequence similarities but considerably more gaps, produced much less accurate trees. For our simulated insertions and deletions, correct multiple sequence alignments did not perform much better than those produced by T-COFFEE, and including sequences with expressed sequence tag–like sequencing errors did not significantly decrease phylogenetic accuracy. In general, although less-divergent sequence families produce more accurate trees, the likelihood of estimating an accurate tree is most dependent on whether radiation in the family was ancient or recent. Accuracy can be improved by combining genes from the same organism when creating species trees or by selecting protein families with the best bootstrap values in comprehensive studies.
    Description: This work was supported by National Institutes of Health grant AI1058054 to M. Sogin.
    Keywords: Simulation ; Phylogenetic analysis ; Accuracy ; Sequence similarity
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  • 44
    facet.materialart.
    Unknown
    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published Journal of the Marine Biological Association of the UK 80 (2000): 827-834, doi:10.1017/S0025315400002800.
    Description: The shell and internal anatomy of the montacutid bivalve Mysella verrilli is described for the first time. The species is remarkable in that the oesophagus has developed into a suctorial proboscis. This has been accompanied by the loss of the palps. In addition the gonads have been extended from the dorsal part of the body to form two gill-like extensions to which the reduced inner demibranchs attach along the postero–ventral margin. Mysella verrilli broods its young in the mantle cavity to the late veliger stage before releasing them. It is believed that the species is probably a suctorial ectoparasite on a soft-bodied benthic invertebrate.
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  • 45
    Publication Date: 2022-05-25
    Description: Author Posting. © Microscopy Society of America, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Microscopy and Microanalysis 13 Suppl. 2 (2007): 10-11, doi:10.1017/S1431927607075186.
    Description: Differential interference contrast (DIC) microscopy is widely used to observe structure and motion in unstained, transparent living cells and isolated organelles, producing a monochromatic shadowcast image of optical phase gradient. Polarized light microscopy (Pol) reveals structural anisotropy due to form birefringence, intrinsic birefringence, stress birefringence, etc. DIC and Pol complement each other as, for example, in a live dividing cell, the DIC image will clearly show the chromosomes while the Pol image will depict the distribution of the birefringent microtubules in the spindle. Both methods, however, have the same shortcomings: they require the proper orientation of a specimen in relation to the optical system in order to achieve best results.
    Repository Name: Woods Hole Open Access Server
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  • 46
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Journal of Atmospheric and Oceanic Technology 21 (2004): 1448–1461, doi:10.1175/1520-0426(2004)021〈1448:AOAPAD〉2.0.CO;2.
    Description: The accuracy of velocities measured by a pulse-coherent acoustic Doppler profiler (PCADP) in the bottom boundary layer of a wave-dominated inner-shelf environment is evaluated. The downward-looking PCADP measured velocities in eight 10-cm cells at 1 Hz. Velocities measured by the PCADP are compared to those measured by an acoustic Doppler velocimeter for wave orbital velocities up to 95 cm s−1 and currents up to 40 cm s−1. An algorithm for correcting ambiguity errors using the resolution velocities was developed. Instrument bias, measured as the average error in burst mean speed, is −0.4 cm s−1 (standard deviation = 0.8). The accuracy (root-mean-square error) of instantaneous velocities has a mean of 8.6 cm s−1 (standard deviation = 6.5) for eastward velocities (the predominant direction of waves), 6.5 cm s−1 (standard deviation = 4.4) for northward velocities, and 2.4 cm s−1 (standard deviation = 1.6) for vertical velocities. Both burst mean and root-mean-square errors are greater for bursts with ub ≥ 50 cm s−1. Profiles of burst mean speeds from the bottom five cells were fit to logarithmic curves: 92% of bursts with mean speed ≥ 5 cm s−1 have a correlation coefficient R2 〉 0.96. In cells close to the transducer, instantaneous velocities are noisy, burst mean velocities are biased low, and bottom orbital velocities are biased high. With adequate blanking distances for both the profile and resolution velocities, the PCADP provides sufficient accuracy to measure velocities in the bottom boundary layer under moderately energetic inner-shelf conditions.
    Description: This work was funded by the U.S. Geological Survey as part of the Southwest Washington Coastal Erosion Study
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  • 47
    Publication Date: 2022-05-25
    Description: © 2007 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Nucleic Acids Research 36 (2008): D607-D611, doi:10.1093/nar/gkm941.
    Description: The starlet sea anemone, Nematostella vectensis, is a basal metazoan organism that has recently emerged as an important model system in developmental biology and evolutionary genomics. StellaBase, the Nematostella Genomics Database (http://stellabase.org), was developed in 2005 as a resource to support the Nematostella research community. Recently, it has become apparent that Nematostella may be a particularly useful system for studying (i) microevolutionary variation in natural populations, and (ii) the functional evolution of human disease genes. We have developed two new databases that will foster such studies: StellaBase Disease (http://stellabase.org/disease) is a relational database that houses 155 904 invertebrate homologous isoforms of human disease genes from four leading genomic model systems (fly, worm, yeast and Nematostella), including 14 874 predicted genes from the sea anemone itself. StellaBase SNP (http://stellabase.org/SNP) is a relational database that describes the location and underlying type of mutation for 20 063 single nucleotide polymorphisms.
    Description: This work was supported by NSF grant FP-91656101-0 to J.C.S. and J.R.F. and EPA Grant F5E11155 to A.R.M. and J.R.F. and by a Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by The Beacon Institute for Rivers and Estuaries, and the J. Seward Johnson Fund to A.M.R.
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  • 48
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 604 (2008): 369-388, doi:10.1017/S0022112008001237.
    Description: We discuss laboratory experiments investigating mixing in a density-driven current flowing down a sloping bottom, in a rotating homogenous fluid. A systematic study spanning a wide range of Froude, 0.8 〈 Fr 〈 10, and Reynolds, 10 〈 Re 〈 1400, numbers was conducted by varying three parameters: the bottom slope; the flow rate; and the density of the dense fluid. Different flow regimes were observed, i.e. waves (non-breaking and breaking) and turbulent regimes, while changing the above parameters. Mixing in the density-driven current has been quantified within the observed regimes, and at different locations on the slope. The dependence of mixing on the relevant non-dimensional numbers, i.e. slope, Fr and Re, is discussed. The entrainment parameter, E, was found to be dependent not only on Fr, as assumed in previous studies, but also on Re. In particular, mixing increased with increasing Fr and Re. For low Fr and Re, the magnitude of the mixing was comparable to mixing in the ocean. For large Fr and Re, mixing was comparable to that observed in previous laboratory experiments that exhibited the classic turbulent entrainment behaviour.
    Description: Support was given by the National Science Foundation project number OCE-0350891.
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  • 49
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 605 (2008): 281-291, doi:10.1017/S002211200800150X.
    Description: A condition is derived for the hydraulic criticality of a 2-layer flow with transverse variations in both layer velocities and thicknesses. The condition can be expressed in terms of a generalized composite Froude number. The derivation can be extended in order to obtain a critical condition for an N-layer system. The results apply to inviscid flows subject to the usual hydraulic approximation of gradual variations along the channel and is restricted to flows in which the velocity remains single-signed within any given layer. For an intermediate layer with a partial segment of sluggish flow, the long-wave dynamics of the overlying and underlying layers become decoupled.
    Description: The work described herein was supported by the Office of Naval Research (N00014- 07-1-0590) and the National Science Foundation (OCE-0525729).
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  • 50
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 616 (2008): 327-356, doi:10.1017/S0022112008003984.
    Description: A steady theory is presented for gravity currents propagating with constant speed into a stratified fluid with a general density profile. Solution curves for front speed versus height have an energy-conserving upper bound (the conjugate state) and a lower bound marked by the onset of upstream influence. The conjugate state is the largest-amplitude nonlinear internal wave supported by the ambient stratification, and in the limit of weak stratification approaches Benjamin's energy-conserving gravity current solution. When the front speed becomes critical with respect to linear long waves generated above the current, steady solutions cannot be calculated, implying upstream influence. For non-uniform stratification, the critical long-wave speed exceeds the ambient long-wave speed, and the critical-Froude-number condition appropriate for uniform stratification must be generalized. The theoretical results demonstrate a clear connection between internal waves and gravity currents. The steady theory is also compared with non-hydrostatic numerical solutions of the full lock release initial-value problem. Some solutions resemble classic gravity currents with no upstream disturbance, but others show long internal waves propagating ahead of the gravity current. Wave generation generally occurs when the stratification and current speed are such that the steady gravity current theory fails. Thus the steady theory is consistent with the occurrence of either wave-generating or steady gravity solutions to the dam-break problem. When the available potential energy of the dam is large enough, the numerical simulations approach the energy-conserving conjugate state. Existing laboratory experiments for intrusions and gravity currents produced by full-depth lock exchange flows over a range of stratification profiles show excellent agreement with the conjugate state solutions.
    Description: K. R. H. was supported by ONR grant N000140610798
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  • 51
    Publication Date: 2022-05-25
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution Non-Commercial License. The definitive version was published in ICES Journal of Marine Science: Journal du Conseil 67 (2010): 379-394, doi:10.1093/icesjms/fsp242.
    Description: In principle, measurements of high-frequency acoustic scattering from oceanic microstructure and zooplankton across a broad range of frequencies can reduce the ambiguities typically associated with the interpretation of acoustic scattering at a single frequency or a limited number of discrete narrowband frequencies. With this motivation, a high-frequency broadband scattering system has been developed for investigating zooplankton and microstructure, involving custom modifications of a commercially available system, with almost complete acoustic coverage spanning the frequency range 150–600 kHz. This frequency range spans the Rayleigh-to-geometric scattering transition for some zooplankton, as well as the diffusive roll-off in the spectrum for scattering from turbulent temperature microstructure. The system has been used to measure scattering from zooplankton and microstructure in regions of non-linear internal waves. The broadband capabilities of the system provide a continuous frequency response of the scattering over a wide frequency band, and improved range resolution and signal-to-noise ratios through pulse-compression signal-processing techniques. System specifications and calibration procedures are outlined and the system performance is assessed. The results point to the utility of high-frequency broadband scattering techniques in the detection, classification, and under certain circumstances, quantification of zooplankton and microstructure.
    Description: The work was supported by the US Office of Naval Research (Grant # N000140210359).
    Keywords: Broadband acoustic scattering ; Internal waves ; Oceanic microstructure ; Zooplankton
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  • 52
    Publication Date: 2022-05-25
    Description: Author Posting. © Society of Systematic Biologists, 2006. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Systematic Biology 55 (2006): 875-885, doi:10.1080/10635150601077683.
    Description: Penelope-like elements (PLEs) are a relatively little studied class of eukaryotic retroelements, distinguished by the presence of the GIY-YIG endonuclease domain, the ability of some representatives to retain introns, and the similarity of PLE-encoded reverse transcriptases to telomerases. Although these retrotransposons are abundant in many animal genomes, the reverse transcriptase moiety can also be found in several protists, fungi, and plants, indicating its ancient origin. A comprehensive phylogenetic analysis of PLEs was conducted, based on extended sequence alignments and a considerably expanded data set. PLEs exhibit the pattern of evolution similar to that of non-LTR retrotransposons, which form deep-branching clades dating back to the Precambrian era. However, PLEs seem to have experienced a much higher degree of lineage losses than non-LTR retrotransposons. It is suggested that PLEs and non-LTR retrotransposons are included into a larger eTPRT (eukaryotic target-primed) group of retroelements, characterized by 5' truncation, variable target-site duplication, and the potential of the 3' end to participate in formation of non-autonomous derivatives.
    Description: This work was supported by the U.S. National Science Foundation (MCB 0614142).
    Keywords: Penelope-like elements ; Retrotransposons ; Reverse transcriptase ; GIY-YIG endonuclease
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  • 53
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2002. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 468 (2002): 179-204, doi:10.1017/S0022112002001520.
    Description: A similarity solution to the long-wave shallow-water equations is obtained for a density current (reduced gravity = g[prime prime or minute], Coriolis parameter = f) propagating alongshore (y = 0). The potential vorticity q = f/H1 is uniform in [minus sign][infty infinity] 〈 x [less-than-or-eq, slant] xnose(t), 0 〈 y [less-than-or-eq, slant] L(x, t), and the nose of this advancing potential vorticity front displaces fluid of greater q = f/H0, which is located at L 〈 y 〈 [infty infinity]. If L0 = L([minus sign][infty infinity], t), the nose point with L(xnose(t), t) = 0 moves with velocity Unose = [surd radical]g[prime prime or minute]H0 [phi], where [phi] is a function of H1/H0, f2L20/g[prime prime or minute]H0. The assumptions made in the similarity theory are verified by an initial value solution of the complete reduced-gravity shallow-water equations. The latter also reveal the new effect of a Kelvin shock wave colliding with a potential vorticity front, as is confirmed by a laboratory experiment. Also confirmed is the expansion wave structure of the intrusion, but the observed values of Unose are only in qualitative agreement; the difference is attributed to the presence of small-scale (non-hydrostatic) turbulence in the laboratory experiment but not in the numerical solutions.
    Description: This work is funded by National Science Foundation grants OCE-9726584 & OCE-0092504 (M. E. S.) and OCE-9810599 (K. R. H.).
    Keywords: Potential vorticity front ; Frontal intrusion ; Kelvin wave
    Repository Name: Woods Hole Open Access Server
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    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2003. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 481 (2003): 329-353, doi:10.1017/S0022112003004051.
    Description: In this article we investigate time-periodic shear flows in the context of the two-dimensional vorticity equation, which may be applied to describe certain large-scale atmospheric and oceanic flows. The linear stability analyses of both discrete and continuous profiles demonstrate that parametric instability can arise even in this simple model: the oscillations can stabilize (destabilize) an otherwise unstable (stable) shear flow, as in Mathieu's equation (Stoker 1950). Nonlinear simulations of the continuous oscillatory basic state support the predictions from linear theory and, in addition, illustrate the evolution of the instability process and thereby show the structure of the vortices that emerge. The discovery of parametric instability in this model suggests that this mechanism can occur in geophysical shear flows and provides an additional means through which turbulent mixing can be generated in large-scale flows.
    Description: F.P.’s and G.F.’s research was supported by grants from NSF, OPP- 9910052 and OCE-0137023. J.P.’s research is supported in part by a grant from NSF, OCE-9901654.
    Keywords: Time-periodic shear flows ; Parametric instability
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  • 55
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 515 (2004): 415-443, doi:10.1017/S0022112004000576.
    Description: The investigation involves the hydraulic behaviour of a dense layer of fluid flowing over an obstacle and subject to entrainment of mass and momentum from a dynamically inactive (but possibly moving) overlying fluid. An approach based on the use of reduced gravity, shallow-water theory with a cross-interface entrainment velocity is compared with numerical simulations based on a model with continuously varying stratification and velocity. The locations of critical flow (hydraulic control) in the continuous model are estimated by observing the direction of propagation of small-amplitude long-wave disturbances introduced into the flow field. Although some of the trends predicted by the shallow-water model are observed in the continuous model, the agreement between the interface profiles and the position of critical flow is quantitatively poor. A reformulation of the equations governing the continuous flow suggests that the reduced gravity model systematically underestimates inertia and overestimates buoyancy. These differences are quantified by shape coefficients that measure the vertical non-uniformities of the density and horizontal velocity that arise, in part, by incomplete mixing of entrained mass and momentum over the lower-layer depth. Under conditions of self-similarity (as in Wood's similarity solution) the shape coefficients are constant and the formulation determines a new criterion for and location of critical flow. This location generally lies upstream of the critical section predicted by the reduced-gravity model. Self-similarity is not observed in the numerically generated flow, but the observed critical section continues to lie upstream of the location predicted by the reduced gravity model. The factors influencing this result are explored.
    Description: M. H. N. would like to thank the Danish Natural Science Research Council for financial support. L. P. and K. H. were supported by the Office of Naval Research under grant N00014-1-01-0167 and by the National Science Foundation under grant OCE-0132903.
    Keywords: Hydraulic behaviour ; Reduced gravity model
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    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2001. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 437 (2001): 301-323, doi:10.1017/S0022112001004402.
    Description: Laboratory and numerical experiments are used to study flow of a uniform-density fluid on the [beta]-plane around a thin zonally elongated island (or ridge segment in the abyss). This orientation is chosen specifically to highlight the roles of the zonal boundary layer dynamics in controlling the circulation around the island. There are examples of deep ocean topography that fall into this category which make the work directly applicable to oceanic flows. Linear theory for the transport around the island and the flow structure is based on a modification of the Island Rule (Pedlosky et al. 1997; Pratt & Pedlosky 1999). The linear solution gives a north–south symmetric flow around the island with novel features, including stagnation points which divide the zonal boundary layers into eastward and westward flowing zones, and a western boundary layer of vanishing length, and zonal jets. Laboratory experiments agree with the linear theory for small degrees of nonlinearity, as measured by the ratio of the inertial to Munk boundary layer scales. With increasing nonlinearity the north–south symmetry is broken. The southern stagnation point (for anticyclonic forcing) moves to the eastern tip of the island. The flow rounding the eastern tip from the northern side of the island now separates from the island. Time-dependence emerges and recirculation cells develop on the northern side of the island. Mean transport around the island is relatively unaffected by nonlinearity and given to within 20% by the modified Island Rule. Numerical solutions of the shallow water equations are in close agreement with the laboratory results. The transition from zonal to meridional island orientation occurs for island inclinations from zonal greater than about 20°.
    Description: This work was supported by the National Science Foundation (Grant Number OCE96-16949).
    Keywords: Zonal boundary layer dynamics ; Island Rule
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  • 57
    Publication Date: 2022-05-25
    Description: © 2007 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Bioinformatics 23 (2007): 1434-1436, doi:10.1093/bioinformatics/btm109.
    Description: Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources, and blogs to disseminate regularly updated content. These standardized syndication formats deliver content directly to the subscriber, allowing them to locally aggregate content from a variety of sources instead of having to find the information on multiple websites. The uBioRSS application is a "taxonomically intelligent" service customized for the biological sciences. It aggregates syndicated content from academic publishers and science news feeds, then uses a taxonomic name entity recognition algorithm to identify and index taxonomic names within those data streams. The resulting name index is cross-referenced to current global taxonomic datasets to provide context for browsing the publications by taxonomic group. This process, called taxonomic indexing, draws upon services developed specifically for biological sciences, collectively referred to as "taxonomic intelligence." Such value-added enhancements can provide biologists with accelerated and improved access to current biological content.
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  • 58
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2006. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 564 (2006): 435-454, doi:10.1017/S0022112006001522.
    Description: Motivated by work on tilted convection (Sheremet, J. Fluid Mech., vol. 506, 2004, p. 217), a set of experiments is presented here using the same set-up of a tilted tank attached to a rotating centrifuge with a 2.5 m arm. Within the tank small, almost neutrally buoyant, spheres are released, and their trajectories are recorded. Thus the forces acting on a sphere can be analysed in the case of misalignment between the buoyancy force and the axis of rotation. The angles of descent characterizing the trajectory are compared with inviscid linear theory developed by Stewartson (Q. J. Math. Appl. Mech., vol. 6, 1953, p. 141), and the agreement is found to be good. The angles should be independent of the density anomaly of the spheres compared to their environment. Using the descent velocity from non-rotating experiments, the density of the spheres is estimated and used to determine the drag acting on them in the rotating experiments. It is found that the drag is up to 50% larger than expected from Stewartson's theory. The agreement is best, not for infinitesimal, but for small Rossby numbers. The results are consistent with observations recorded by Maxworthy (J. Fluid Mech., vol. 40, 1970, p. 453).
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  • 59
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 593 (2007): 1-32, doi:10.1017/S0022112007008415.
    Description: Results are presented from an experimental study of shallow flow in a channel partially obstructed by an array of circular cylinders. The cylinder array is a model for emergent vegetation in an open channel, but also represents a simple sparse porous medium. A shear layer with regular vortex structures forms at the edge of the array, evolving downstream to an equilibrium width and vortex size. The vortices induce nearly periodic oscillations with a frequency that matches the most unstable linear mode for a parallel shear flow. The shear layer is asymmetric about the array interface and has a two-layer structure. An inner region of maximum shear near the interface contains a velocity inflection point and establishes the penetration of momentum into the array. An outer region, resembling a boundary layer, forms in the main channel, and establishes the scale of the vortices. The vortex structure, educed by conditional sampling, shows strong crossflows with sweeps from the main channel and ejections from the array, which create significant momentum and mass fluxes across the interface. The sweeps maintain the coherent structures by enhancing shear and energy production at the interface. A linear stability analysis is consistent with the experimental results and demonstrates that the instability is excited by the differential drag between the channel and the array.
    Description: This material is based upon work supported by the National Science Foundation under Grant 0125056.
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  • 60
    Publication Date: 2022-05-26
    Description: © 2008 The Authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The definitive version was published in Nucleic Acids Research 36 (2008): 2522-2529, doi:10.1093/nar/gkm1166
    Description: Penelope-like elements (PLEs) represent a new class of retroelements identified in more than 80 species belonging to at least 10 animal phyla. Penelope isolated from Drosophila virilis is the only known transpositionally active representative of this class. Although the size and structure of the Penelope major transcript has been previously described in both D. virilis and D. melanogaster transgenic strains, the architecture of the Penelope regulatory region remains unknown. In order to determine the localization of presumptive Penelope promoter and enhancer-like elements, segments of the putative Penelope regulatory region were linked to a CAT reporter gene and introduced into D. melanogaster by P-element-mediated transformation. The results obtained using ELISA to measure CAT expression levels and RNA studies, including RT–PCR, suggest that the active Penelope transposon contains an internal promoter similar to the TATA-less promoters of LINEs. The results also suggest that some of the Penelope regulatory sequences control the preferential expression in the ovaries of the adult flies by enhancing expression in the ovary and reducing expression in the carcass. The possible significance of the intron within Penelope for the function and evolution of PLEs, and the effect of Penelope insertions on adjacent genes, are discussed.
    Description: This work was supported by grants from Russian Academy of Sciences (Cell and Molecular Biology to M.E.), and Welcome Trust Grant (075698) to M.E and D.J.F.
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  • 61
    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in ICES Journal of Marine Science: Journal du Conseil 67 (2010): 1-9, doi:10.1093/icesjms/fsp221.
    Description: Effective marine ecosystem-based management (EBM) requires understanding the key processes and relationships controlling the aspects of biodiversity, productivity, and resilience to perturbations. Unfortunately, the scales, complexity, and non-linear dynamics that characterize marine ecosystems often confound managing for these properties. Nevertheless, scientifically derived decision-support tools (DSTs) are needed to account for impacts resulting from a variety of simultaneous human activities. Three possible methodologies for revealing mechanisms necessary to develop DSTs for EBM are: (i) controlled experimentation, (ii) iterative programmes of observation and modelling ("learning by doing"), and (iii) comparative ecosystem analysis. We have seen that controlled experiments are limited in capturing the complexity necessary to develop models of marine ecosystem dynamics with sufficient realism at appropriate scales. Iterative programmes of observation, model building, and assessment are useful for specific ecosystem issues but rarely lead to generally transferable products. Comparative ecosystem analyses may be the most effective, building on the first two by inferring ecosystem processes based on comparisons and contrasts of ecosystem response to human-induced factors. We propose a hierarchical system of ecosystem comparisons to include within-ecosystem comparisons (utilizing temporal and spatial changes in relation to human activities), within-ecosystem-type comparisons (e.g. coral reefs, temperate continental shelves, upwelling areas), and cross-ecosystem-type comparisons (e.g. coral reefs vs. boreal, terrestrial vs. marine ecosystems). Such a hierarchical comparative approach should lead to better understanding of the processes controlling biodiversity, productivity, and the resilience of marine ecosystems. In turn, better understanding of these processes will lead to the development of increasingly general laws, hypotheses, functional forms, governing equations, and broad interpretations of ecosystem responses to human activities, ultimately improving DSTs in support of EBM.
    Keywords: Comparative marine ecosystem analysis ; Decision-support tools ; EAM ; EBM ; Ecological modelling ; Ecosystem approaches to management ; Ecosystem-based management
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  • 62
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2005. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 536 (2005): 253-283, doi:10.1017/S0022112005004544.
    Description: The generation of a gravity current by the release of a semi-infinite region of buoyant fluid of depth $H$ overlying a deeper, denser and quiescent lower layer in a rotating channel of width $w$ is considered. Previous studies have focused on the characteristics of the gravity current head region and produced relations for the gravity current speed $c_{b}$ and width $w_b$ as a functions of the local current depth along the wall $h_b$, reduced gravity $g^\prime$, and Coriolis frequency $f$. Here, the dam-break problem is solved analytically by the method of characteristics assuming reduced-gravity flow, uniform potential vorticity and a semigeostrophic balance. The solution makes use of a local gravity current speed relation $c_{b} \,{=}\, c_b(h_b,\ldots)$ and a continuity constraint at the head to close the problem. The initial value solution links the local gravity current properties to the initiating dam-break conditions. The flow downstream of the dam consists of a rarefaction joined to a uniform gravity current with width $w_b$ (${\le}\, w$) and depth on the right-hand wall of $h_b$, terminated at the head moving at speed $c_b$. The solution gives $h_b$, $c_b$, $w_b$ and the transport of the boundary current as functions of $w/L_R$, where $L_R \,{=}\, \sqrt{g^\prime H}/f$ is the deformation radius. The semigeostrophic solution compares favourably with numerical solutions of a single-layer shallow-water model that internally develops a leading bore. Existing laboratory experiments are re-analysed and some new experiments are undertaken. Comparisons are also made with a three-dimensional shallow-water model. These show that lateral boundary friction is the primary reason for differences between the experiments and the semigeostrophic theory. The wall no-slip condition is identified as the primary cause of the experimentally observed decrease in gravity current speed with time. A model for the viscous decay is developed and shown to agree with both experimental and numerical model data.
    Description: This work was supported by NSF Grants OCE-0095059 and OCE-0132903.
    Keywords: Gravity current ; Dam-break problem
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    Publication Date: 2022-05-26
    Description: © The Author 2006. This article is posted here by permission of Oxford University Press. The definitive version was published in Nucleic Acids Research 34 (2006): 1-9, doi:10.1093/nar/gkj405.
    Description: The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification of genes, the boundaries of genes in terms of precise start and end sites, and description of the gene products. Known and predicted functions were assigned to each gene product on the basis of experimental evidence or sequence analysis. Since both kinds of evidence are constantly expanding, no annotation is complete at any moment in time. This is a snapshot analysis based on the most recent genome sequences of two E.coli K-12 bacteria. An accurate and up-to-date description of E.coli K-12 genes is of particular importance to the scientific community because experimentally determined properties of its gene products provide fundamental information for annotation of innumerable genes of other organisms. Availability of the complete genome sequence of two K-12 strains allows comparison of their genotypes and mutant status of alleles.
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  • 64
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2006. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 561 (2006):103–112, doi:10.1017/S0022112006000991
    Description: A self-consistent formalism to estimate baroclinic energy densities and fluxes resulting from the propagation of internal waves of arbitrary amplitude is derived using the concept of available potential energy. The method can be applied to numerical, laboratory or field data.
    Description: MBIWE98 was supported by the US Geological Survey and the Office of Naval Research. A.S. received support from the Office of Naval Research (N00014-05-1-0361), R.B. from the Walter A. and Hope Noyes Smith Chair on Coastal Oceanography and B.B. from the US Geological Survey.
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  • 65
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    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2003. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 490 (2003): 189-215, doi:10.1017/S0022112003005007.
    Description: The baroclinic instability of a zonal current on the beta-plane is studied in the context of the two-layer model when the shear of the basic current is a periodic function of time. The basic shear is contained in a zonal channel and is independent of the meridional direction. The instability properties are studied in the neighbourhood of the classical steady-shear threshold for marginal stability. It is shown that the linear problem shares common features with the behaviour of the well-known Mathieu equation. That is, the oscillatory nature of the shear tends to stabilize an otherwise unstable current while, on the contrary, the oscillation is able to destabilize a current whose time-averaged shear is stable. Indeed, this parametric instability can destabilize a flow that at every instant possesses a shear that is subcritical with respect to the standard stability threshold. This is a new source of growing disturbances. The nonlinear problem is studied in the same near neighbourhood of the marginal curve. When the time-averaged flow is unstable, the presence of the oscillation in the shear produces both periodic finite-amplitude motions and aperiodic behaviour. Generally speaking, the aperiodic behaviour appears when the amplitude of the oscillating shear exceeds a critical value depending on frequency and dissipation. When the time-averaged flow is stable, i.e. subcritical, finite-amplitude aperiodic motion occurs when the amplitude of the oscillating part of the shear is large enough to lift the flow into the unstable domain for at least part of the cycle of oscillation. A particularly interesting phenomenon occurs when the time-averaged flow is stable and the oscillating part is too small to ever render the flow unstable according to the standard criteria. Nevertheless, in this regime parametric instability occurs for ranges of frequency that expand as the amplitude of the oscillating shear increases. The amplitude of the resulting unstable wave is a function of frequency and the magnitude of the oscillating shear. For some ranges of shear amplitude and oscillation frequency there exist multiple solutions. It is suggested that the nature of the response of the finite-amplitude behaviour of the baroclinic waves in the presence of the oscillating mean flow may be indicative of the role of seasonal variability in shaping eddy activity in both the atmosphere and the ocean.
    Description: J.P.’s research is supported in part by a grant from NSF, OCE 9901654.
    Keywords: Baroclinic instability ; Baroclinic waves
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  • 66
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Zygote 8 (2000): 15-24, doi:10.1017/S0967199400000782.
    Description: The physiology of the early embryo may be indicative of embryo vitality and therefore methods for non-invasively monitoring physiological parameters from embryos could improve preimplantation diagnoses. The self-referencing electrophysiological technique is capable of non-invasive measurement of the physiology of individual cells by monitoring the movement of ions and molecules between the cell and the surrounding media. Here we use this technique to monitor gradients of calcium, potassium, oxygen and hydrogen peroxide around individual mouse preimplantation embryos. The calcium-sensitive electrode in self-referencing mode identified a region of elevated calcium concentration ([similar]0.25 pmol) surrounding each embryo. The calcium gradient surrounding embryos was relatively steep, such that the region of elevated calcium extended into the medium only 4 [mu]m from the embryo. By contrast, using an oxygen-sensitive electrode an extensive gradient of reduced dissolved oxygen concentration was measured surrounding the embryo and extended tens of micrometres into the medium. A gradient of neither potassium nor hydrogen peroxide was observed around unperturbed embryos. We also demonstrate that monitoring the physiology of embryos using the self-referencing technique does not compromise their subsequent development. Blastocysts studied with the self-referencing technique implanted and developed to term at the same frequency as did unexamined, control embryos. Therefore, the self-referencing electrode provides a valuable non-invasive technique for studying the physiology and pathophysiology of individual embryos without hindering their subsequent development.
    Description: A portion of this work was funded by an NIH R21 #RR 12718–02 to D.L.K. and P.J.S.S., KO81099 to D.L.K. and NIH P41 RR01395 to P.J.S.S.
    Keywords: Calcium ; Embryo physiology ; Embryo transfer ; Oxygen ; Preimplantation diagnosis
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  • 67
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    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2005. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 529 (2005): 71-95, doi:10.1017/S0022112005003393.
    Description: The role of mesoscale oceanic eddies in driving large-scale currents is studied in an eddy-resolving midlatitude double-gyre ocean model. The reference solution is decomposed into large-scale and eddy components in a way which is dynamically consistent with a non-eddy-resolving ocean model. That is, the non-eddy-resolving solution driven by this eddy-forcing history, calculated on the basis of this decomposition, correctly approximates the original flow. The main effect of the eddy forcing on the large-scale flow is to enhance the eastward-jet extension of the subtropical western boundary current. This is an anti-diffusive process, which cannot be represented in terms of turbulent diffusion. It is shown that the eddy-forcing history can be approximated as a space–time correlated, random-forcing process in such a way that the non-eddy-resolving solution correctly approximates the reference solution. Thus, the random-forcing model can potentially replace the diffusion model, which is commonly used to parameterize eddy effects on the large-scale currents. The eddy-forcing statistics are treated as spatially inhomogeneous but stationary, and the dynamical roles of space–time correlations and spatial inhomogeneities are systematically explored. The integral correlation time, oscillations of the space correlations, and inhomogeneity of the variance are found to be particularly important for the flow response.
    Description: Funding for this research was provided by NSF grants OCE 0091836 and OCE 03-44094, by the Royal Society Fellowship, and by WHOI grants 27100056 and 52990035.
    Keywords: Mesoscale oceanic eddies ; Large-scale currents ; Random-forcing model
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  • 68
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    Description: Author Posting. © Cambridge University Press, 2002. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 464 (2002): 251-278, doi:10.1017/S0022112002008868.
    Description: The dynamics of buoyant gravity currents in a rotating reference frame is a classical problem relevant to geophysical applications such as river water entering the ocean. However, existing scaling theories are limited to currents propagating along a vertical wall, a situation almost never realized in the ocean. A scaling theory is proposed for the structure (width and depth), nose speed and flow field characteristics of buoyant gravity currents over a sloping bottom as functions of the gravity current transport Q, density anomaly g[prime prime or minute], Coriolis frequency f, and bottom slope [alpha]. The nose propagation speed is cp [similar] cw/ (1 + cw/c[alpha]) and the width of the buoyant gravity current is Wp [similar] cw/ f(1 + cw/c[alpha]), where cw = (2Qg[prime prime or minute] f)1/4 is the nose propagation speed in the vertical wall limit (steep bottom slope) and c[alpha] = [alpha]g/f is the nose propagation speed in the slope-controlled limit (small bottom slope). The key non-dimensional parameter is cw/c[alpha], which indicates whether the bottom slope is steep enough to be considered a vertical wall (cw/c[alpha] [rightward arrow] 0) or approaches the slope-controlled limit (cw/c[alpha] [rightward arrow] [infty infinity]). The scaling theory compares well against a new set of laboratory experiments which span steep to gentle bottom slopes (cw/c[alpha] = 0.11–13.1). Additionally, previous laboratory and numerical model results are reanalysed and shown to support the proposed scaling theory.
    Description: This research was supported by NSF grant OCE-0095059.
    Keywords: Buoyant gravity currents ; Scaling theory ; Sloping bottom
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    Description: Author Posting. © Cambridge University Press, 2003. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of the Marine Biological Association of the UK 83 (2003): 1347-1350, doi:10.1017/S0025315403008798.
    Description: Trophic positions (TP) were estimated for the blue shark (Prionace glauca), shortfin mako (Isurus oxyrinchus), thresher shark (Alopias vulpinus), and basking shark (Cetorhinus maximus) using stable isotope ratios of carbon ([delta]13C) and nitrogen ([delta]15N). The basking shark had the lowest TP (3·1) and [delta]15N value (10·4‰), whereas the thresher shark had the highest values (4·5, 15·2‰). Mako sharks showed considerable variation in TP and isotopic values, possibly due to foraging from both inshore and offshore waters. Thresher sharks were significantly more enriched in [delta]15N than blue sharks and mako sharks, suggesting a different prey base. The [delta]13C values of thresher sharks and mako sharks varied significantly, but neither was significantly different from that of blue sharks. No statistical differences were found between our TP estimations and those derived from published stomach contents analyses, indicating that stable isotope data may be used to estimate the trophic status of sharks.
    Description: This work was supported by National Marine Fisheries Service Grant NA16MF1323 to M.E.L.
    Keywords: Prionace glauca ; Isurus oxyrinchus ; Alopias vulpinus ; Cetorhinus maximus ; Trophic positions
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  • 70
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    In:  Handbook of Avian Hybrids of the World vol. 76, 1, pp. 59-61
    Publication Date: 2024-01-12
    Keywords: book review ; geographic distribution ; hybridisation ; birds
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    In:  Biased embryos and evolution vol. 74, 1/2, pp. 209-211
    Publication Date: 2024-01-12
    Keywords: evolution ; natural selection ; variation ; developmental bias
    Repository Name: National Museum of Natural History, Netherlands
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  • 72
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    The @journal of modern African studies 12 (1974), S. 543-568 
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    Topics: Ethnic Sciences , History , Political Science , Economics
    Notes: Tunisia A has long been regarded as a model of political development and stability in the Third World. There is no doubt that the charismatic Habib Bourguiba, the aging (71) yet indefatigable leader of an effective nation-wide party apparatus, has helped ensure Tunisia's development from the period of the pre-independence struggle until today. It is not unnatural, therefore, given the critical role of Bourguiba in the operation of the political system, to question the degree of institutionalisation, stability, modernity, and democracy that Tunisia could retain after the passing of its dynamic leader.
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    The @journal of modern African studies 12 (1974), S. 191-209 
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    Notes: Lenin set the tone for most successful revolutions in the twentieth century when he altered traditional Marxism to suit the conditions of Russia. Mao Tse-tung followed Lenin's example when he too adjusted Marxism (and Leninism) to a Chinese environment. It seems to follow, therefore, that attempts at revolution everywhere should not be mere imitations of previously successful upheavals but should, instead, be tailored to fit specific circumstances. Thus, African revolutions should be made on the basis of African conditions. But such conditions are not, in general, always easy to discern, nor are separate analyses of those conditions certain to be similar. This is especially true of the theories of revolution of two of the most important and influential figures in recent African history: Frantz Fanon (1925–61) and Amilcar Cabral (1925–73).
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    The @journal of modern African studies 12 (1974), S. 681-684 
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    The @journal of modern African studies 12 (1974), S. 699-700 
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    The @journal of modern African studies 12 (1974), S. 377-393 
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    Notes: The idea that Russia was the first underdeveloped country has begun to gain currency among political scientists. It implies that social processes in Russia may be profitably compared with more recent developments in the Third World. In this article I would like to test this hypothesis with respect to an important ideological controversy which took place in Russia during the nineteenth century by examining it alongside discussions among French-speaking West Africans in the period after World War II. More particularly, I would like to compare what might be called the neo-traditional themes and anti-western patriotism of the Slavophiles with the intellectual position taken by the early spokesmen of négritude.
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    The @journal of modern African studies 12 (1974), S. 423-439 
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    Notes: This article was written before information on the great Ethiopian famine of 1973 had reached the outside world. Since I was not then aware of the catastrophe, the facts given here should not be regarded as a reconstruction of the causes of the famine. On the contrary, the deterioration in the conditions of the indigenous inhabitants had been known for some years – in fact, since the beginning of the capitalist offensive in the north-eastern lowlands of Ethiopia, namely the Awash Valley. I had already predicted the famine in late 1971 in two reports,1 and in discussions with officials of the Ethiopian Government.
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    The @journal of modern African studies 12 (1974), S. 441-457 
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    Topics: Ethnic Sciences , History , Political Science , Economics
    Notes: After many years of poverty and neglect, Mali is today faced with a unique opportunity to develop its rural economy. The rapid expansion of demand for beef in some of the coastal regions of West Africa has recently caught up with the available supply from the interior, and cattle prices have increased dramatically. This price rise has been accentuated by the effects of recent drought which seriously depleted the herds. Consequently, there is enormous incentive for interior regions to find new ways of increasing production which, at the same time, take pressure off their overburdened range-lands. Mali is fortunate in having a resource endowment which has considerable potential in this respect.
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    The @journal of modern African studies 12 (1974), S. 459-470 
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    Notes: The English-speaking independent countries of Central and Southern Africa, with widely different economies and natural resources, face at this stage in their development very similar manpower and educational problems. Shortages of skilled technical workers are still acute in Botswana, Lesotho, Swaziland, Zambia, and Malawi; and shortages of educated people, particularly those with professional or degree-level qualifications, are obvious. Most of the countries in this region, therefore, are still at a stage where the output from schools and universities has not yet been sufficient to localise many skilled posts, particularly those in the private sector. So although unemployment is beginning to appear at the junior secondary levels, the crucial questions as seen both by ministries of education and by planning units still tend to revolve around the central dilemma of ‘How fast ought we to expand?’ In this sense the priorities are different from many countries further north in Africa where surpluses of secondary and higher educated workers have been apparent for some time.
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    The @journal of modern African studies 12 (1974), S. 287-295 
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    Notes: The creation of an international secretariat is ‘the innovation that transforms a series of conferences into an organization’1 The signing of the Charter of the Organisation of African Unity by representatives of 30 independent states in the early hours of 26 May 1963 at Addis Ababa was certainly intended to transform a multiple series of international conferences—including rival meetings of the ‘Monrovia’ and ‘Casablanca’ states in particular—into a permanent regional organisation whose membership embraced all independent African states. To this end the O.A.U. Charter provided for a General Secretariat, to be directed by an Administrative Secretary-General and one or more Assistant Secretaries-General.
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    The @journal of modern African studies 12 (1974), S. 326-329 
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    The @journal of modern African studies 11 (1973), S. 671-672 
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    The @journal of modern African studies 12 (1974), S. 89-107 
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    Notes: This article represents an attempt to bring together and survey the diverse techniques devised by individual scholars and institutions for the purpose of measuring comparative economic development. Any merits it therefore possesses must rest in its clarifications rather than in its inspirations. However, so many techniques exist, founded upon so many theoretical bases, that a concise overview would appear to be justified.
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    The @journal of modern African studies 12 (1974), S. 109-116 
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    Notes: The culture of a country, or a society within it, provides the context for education. The planning of education should therefore start with a consideration of the cultural background, and this is especially true of those countries in Africa which are predominantly Islamic. However, when an attempt is made to follow this line of approach, the complexity of the situation soon becomes apparent; and it is necessary to bear in mind several themes that constantly arise.
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    The @journal of modern African studies 12 (1974), S. 131-135 
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    Notes: In March 1961 the Democratic Party won the national elections in Uganda largely because it captured o of the 21 seats within the Kingdom of Buganda. The Buganda Government had ordered a boycott of the elections, because neither the British administration nor the African political parties would guarantee Buganda's future position within Uganda, and all but three per cent of the electorate stayed away from the polls. The Democratic Party took office despised within Buganda because it had defied the Kabaka, and feared by his Protestant advisers because of its predominantly Catholic support.
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    The @journal of modern African studies 12 (1974), S. 341-345 
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    The @journal of modern African studies 12 (1974), S. 1-4 
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    The @journal of modern African studies 12 (1974), S. 19-43 
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    Notes: The introduction of the one-party system in Tanzania in 1965 was in part explained as a means of rescuing the National Assembly or Bunge from decline and decay. This institution had become a rubber stamp, according to the Presidential Commission, making few meaningful contributions to the system of government: debates had become ‘lifeless and superficial’, and legislation was passed rapidly and uncritically, ‘without challenge to basic principles or careful examination of detailed provisions’. The President had appropriately raised the question of whether the National Assembly should be formally removed from the structure of the state, or amalgamated with that of the ruling party.
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    The @journal of modern African studies 12 (1974), S. 69-88 
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    Notes: Much recent analysis of South Africa's outward-looking policy towards independent Africa has asserted that the implications of this are primarily economic in character: ‘South Africa is thrusting out into Africa for a number of reasons. She needs markets for her manufactured goods. She wants to export capital.’1 Indeed, many observers carry the argument further, and suggest that she is seeking an economic and political role in Africa analogous to that of the United States in Latin America. In the words of Sean Gervasi:
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    The @journal of modern African studies 12 (1974), S. 117-125 
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    Notes: In the past decade Africa has experienced a dramatic decrease in the number of national democratic institutions. Parliaments have not met, parties have declined or been outlawed, and elections have not been held in many states. The situation appears to be similar at the local level. Commenting on this state of affairs, Fred G. Burke observed in 1969: ‘One wonders whether there is to be any future for democratic local government in Africa. One might also wonder whether there should be any future.’2
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    The @journal of modern African studies 12 (1974), S. 141-143 
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    The @journal of modern African studies 11 (1973), S. 655-658 
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    The @journal of modern African studies 12 (1974), S. 154-157 
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    The @journal of modern African studies 12 (1974), S. 165-168 
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