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  • Saccharomyces cerevisiae  (261)
  • taxonomy  (246)
  • Springer  (506)
  • Institute of Physics (IOP)
  • Springer Nature
  • 2010-2014
  • 2000-2004  (85)
  • 1990-1994  (421)
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  • 1
    Electronic Resource
    Electronic Resource
    Biogeography, geographic variation and habitat preference in the Amazilia Hummingbird,Amazilia amazilia Lesson (Aves: Trochilidae), with notes on the status ofAmazilia alticola Gould (2000)
    Springer
    Journal of ornithology 141 (2000), S. 93-101 
    Details
    ISSN: 1439-0361
    Keywords: Biogeography ; geographic variation ; taxonomy ; Amazilia ; Trochilidae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Description / Table of Contents: Zusammenfassung Die vorliegende Studie stellt die Ergebnisse von Untersuchungen zur Biogeographie, geographischen Variation, Habitatwahl und Taxonomie der Lesson-Amazilie (Amazilia amazilia) vor. Das Taxon umfaßt gegenwärtig fünf Unterarten, die von W-Ecuador bis SW-Peru verbreitet sind und überwiegend submontane Lebensräume besiedeln. Die Ventralfärbung unterliegt klinaler Variation; weiße Gefiederanteile nehmen von nördlichen zu südlichen Populationen ab, rotbraune Partien dagegen zu. Eigenständige morphologisch-morphometrische Kennzeichen sowie Unterschiede in den Habitatpräferenzen und in der Gesangsstruktur rechtfertigen es, die bisherige UnterartA. a. alticola als Paraspezies (A. alticola, Loja-Amazilie) anzuerkennen. Der Vulgärname weist auf den rezenten Verbreitungsschwerpunkt in den südecuadorianischen Anden hin. Aufgrund der engen Verwandtschaft bildenA. amazilia undA. alticola sowie die in Kolumbien endemische ArtA. castaneiventris eine Superspezies.
    Notes: Summary This paper reviews the biogeography, geographic variation, and habitat characteristics of the Amazilia Hummingbird (Amazilia amazilia). Based on morphological features, habitat preferences, and bioacoustics, I propose that the currently recognized subspeciesA. a. alticola should be regarded as a species distinct fromA. amazilia. Synapomorphic characters found in both taxa indicate membership of the same superspecies, together with the Colombian speciesA. castaneiventris. Considering the distributional focus ofA. alticola in the Andes of southern Ecuador, the English species name Loja Hummingbird is suggested.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF01651776
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  • 2
    Electronic Resource
    Electronic Resource
    Calls of the Jungle Crow (Corvus macrorhynchos s.l.) as a taxonomic character (2000)
    Springer
    Journal of ornithology 141 (2000), S. 275-284 
    Details
    ISSN: 1439-0361
    Keywords: East Asia ; taxonomy ; species delimitation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Description / Table of Contents: Zusammenfassung Über die Gliederung der ostasiatischen Dickschnabelkrähen (Corvus macrorhynchos s.l.) in Biospezies besteht bisher keine einhellige Meinung. In dem großen Verbreitungsgebiet zwischen Indien, Japan und Timor werden gegenwärtig eine, zwei oder drei Arten anerkannt. Hier versuchen wir, in akustischen Merkmalen artanzeigende Merkmale zu finden. Eine Diskriminanzanalyse der Rufstruktur (76 Parameter) trennt dreiCorvus-Taxa (levaillantii undjaponensis aus der ‘macrorhynchos-Gruppe’,splendens) von der Südabdachung des Himalaya (Nepal, Kashmir) vollständig voneinander. BeiC. japonensis bleiben die trennenden Merkmale über große geographische Gebiete konstant. Die akustischen Unterschiede werden als taxonomisch relevant angesehen; sie zeigen Artgrenzen an. Folglich werden die Dickschnabelkrähen aus den Tief- und Hochlagen Nepals (Kontaktzone um 2 000 m) zwei Biospezies zugeordnet (C. japonensis undC. levaillantii), in Übereinstimmung mit morphologischen, ökologischen und parasitologischen Daten. Taxonomische Extrapolation der Befunde auf die Systematik anderer ‘macrorhynchos’-Populationen erscheint über die Rufstruktur (bis zum Fernen Osten Rußlands) und über Federling-Parasiten (Mallophaga) auf große Teile SO-Asiens möglich, bedarf aber für die stimmlichen Merkmale noch weiterer Klärung. Wahrscheinlich müssen immacrorhynchos-Komplex mindestens drei biologische Arten anerkannt werden (C. japonensis, C. levaillantii, C. macrorhynchos s. str.).
    Notes: Summary A discriminant analysis of the call structure completely separates threeCorvus taxa (levaillantii andjaponensis of the ‘macrorhynchos group’,splendens) inhabiting the southern slopes of the Himalayas (Nepal, Kashmir). The acoustic differences are considered taxonomically relevant, indicating species boundaries. Therefore the Jungle Crows of lower and upper Nepal (contact zone at around 2,000 m) are assigned to two biospecies (C. japonensis andC. levaillantii), as is consistent with morphological, ecological and parasitological data. It appears possible to extrapolate the findings regarding call structure to the systematics of other ‘macrorhynchos’ populations as distant as the Russian Far East, and those regarding mallophagan parasites to large areas of SE Asia; regarding the vocal characteristics, however, further clarification is needed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF02462237
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  • 3
    Electronic Resource
    Electronic Resource
    A gene of the major facilitator superfamily encodes a transporter for enterobactin (Enb1p) in Saccharomyces cerevisiae (2000)
    Springer
    BioMetals 13 (2000), S. 65-72 
    Details
    ISSN: 1572-8773
    Keywords: major facilitator superfamily ; iron transport ; siderophores ; enterobactin ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract While in fungi iron transport via hydroxamate siderophores has been amply proven, iron transport via enterobactin is largely unknown. Enterobactin is a catecholate-type siderophore produced by several enterobacterial genera grown in severe iron deprivation. By using the KanMX disruption module in vector pUG6 in a fet3Δ background of Saccharomyces cerevisiae we were able to disrupt the gene YOL158c Sce of the major facilitator super family (MFS) which has been previously described as a gene encoding a membrane transporter of unknown function. Contrary to the parental strain, the disruptant was unable to utilize ferric enterobactin in growth promotion tests and in transport assays using 55Fe-enterobactin. All other siderophore transport properties remained unaffected. The results are evidence that in S. cerevisiae the YOL158c Sce gene of the major facilitator super family, now designated ENB1, encodes a transporter protein (Enb1p), which specifically recognizes and transports enterobactin.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1009250017785
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  • 4
    Electronic Resource
    Electronic Resource
    Questioning species realities (2000)
    Springer
    Conservation genetics 1 (2000), S. 67-76 
    Details
    ISSN: 1572-9737
    Keywords: mitochondrial DNA ; phylogeny ; phylogeography ; speciation ; species concepts ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1010133721121
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  • 5
    Electronic Resource
    Electronic Resource
    Building on Bedrock: William Steel Creighton and the Reformation of Ant Systematics, 1925–1970 (2000)
    Springer
    Journal of the history of biology 33 (2000), S. 27-70 
    Details
    ISSN: 1573-0387
    Keywords: ants ; E. O. Wilson ; Ernst Mayr ; systematics ; Systematics and the Origin of Species ; taxonomy ; William L. Brown ; William Morton Wheeler ; William Steel Creighton
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , History
    Notes: Abstract Ideas about the natural world are intertwined with the personalities, practices, and the workplaces of scientists. The relationships between these categories are explored in the life of the taxonomist William Steel Creighton. Creighton studied taxonomy under William Morton Wheeler at Harvard University. He took the rules he learned from Wheeler out of the museum and into the field. In testing the rules against a new situation, Creighton found them wanting. He sought a new set of taxonomic principles, one he eventually found in Ernst Mayr's Systematics and the Origin of Species. Mayr's ideas tied together a number of themes running through Creighton's life: the need for a revised taxonomy, the emphasis on fieldwork, and the search for a new power center for ant taxonomy after Wheeler died. Creighton's adoption of Mayr's ideas as part of his professional identity also had very real implications for his career path: field studies required long and intensive studies, and Creighton would always be a slow worker. His method of taxonomy contrasted sharply not only with Wheeler's but also with two of his younger colleagues, William L. Brown and E. O. Wilson, who took over Wheeler's spot at Harvard in 1950. The disputes between these men over ant taxonomy involved, in addition to questions of technical interest, questions about where and how best to do taxonomy and who could speak withthe most authority. Creighton's story reveals how these questions are interrelated. The story also reveals the importance of Mayr's book for changes occurring in taxonomy in the middle of the twentieth century.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004712911037
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  • 6
    Electronic Resource
    Electronic Resource
    A screen of yeast respiratory mutants for sensitivity against the mycotoxin citrinin identifies the vacuolar ATPase as an essential factor for the toxicity mechanism (2000)
    Springer
    Current genetics 37 (2000), S. 227-284 
    Details
    ISSN: 1432-0983
    Keywords: Key words Citrinin ; Pet mutants ; Mitochondrial biogenesis ; Vacuolar ATPase ; YKL118W disruption ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In countries with a hot climate the mycotoxin citrinin represents a serious problem in fungal food-poisoning. In humans the renal system is affected the most and the mitochondrial respiratory chain was identified as a possible sensitive target for this toxin. In addition, citrinin has an antifungal activity that also inhibits the growth of the yeast Saccharomyces cerevisiae. So far the precise mode of action and the subcellular targets for citrinin have not been identified. Therefore, we decided to use the model organism yeast for a genetic approach to identify genes that play a role in the sensitivity against this mycotoxin. A large collection of conditional respiratory deficient yeast mutants was screened for sensitivity against citrinin. One special pet-ts mutant was identified that exhibited a higher sensitivity against citrinin. The genetic system of yeast allowed the isolation of the respective wild-type gene. This yeast gene encodes the Vph2p subunit that is essential for the correct assembly of the vacuolar ATPase. Isolation of the mutated gene and gene-disruption experiments of VPH2 and the partially overlapping small YKL118W gene verified this finding. The wild-type VPH2 gene restores all defects of the mutants. In contrast to this, YKL118W gave no complementation and the null mutant showed no phenotype. Thereby the yeast vacuolar ATPase was found to be important for the toxic effect of citrinin in yeast cells. The consequences of this finding for the molecular mechanism of citrinin action and its relation to the mitochondrial respiratory chain are discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s002940070001
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  • 7
    Electronic Resource
    Electronic Resource
    POL32, a subunit of the Saccharomyces cerevisiae DNA polymerase δ, defines a link between DNA replication and the mutagenic bypass repair pathway (2000)
    Springer
    Current genetics 38 (2000), S. 178-187 
    Details
    ISSN: 1432-0983
    Keywords: Key wordsPOL32 ; SRS2 ; DNA repair ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Pol32 is a subunit of Saccharomyces cerevisiae DNA polymerase δ required in DNA replication and repair. To gain insight into the function of Pol32 and to determine in which repair pathway POL32 may be involved, we extended the analysis of the pol32Δ mutant with respect to UV and methylation sensitivity, UV-induced mutagenesis; and we performed an epistasis analysis of UV sensitivity by combining the pol32Δ with mutations in several genes for postreplication repair (RAD6 group), nucleotide excision repair (RAD3 group) and recombinational repair (RAD52 group). These studies showed that pol32Δ is deficient in UV-induced mutagenesis and place POL32 in the error-prone RAD6/REV3 pathway. We also found that the increase in the CAN1 spontaneous forward mutation of different rad mutators relies entirely or partially on a functional POL32 gene. Moreover, in a two-hybrid screen, we observed that Pol32 interacts with Srs2, a DNA helicase required for DNA replication and mutagenesis. Simultaneous deletion of POL32 and SRS2 dramatically decreases cellular viability at 15 °C and greatly increases cellular sensitivity to hydroxyurea at the permissive temperature. Based on these findings, we propose that POL32 defines a link between the DNA polymerase and helicase activities, and plays a role in the mutagenic bypass repair pathway.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s002940000149
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  • 8
    Electronic Resource
    Electronic Resource
    Endopolygalacturonase genes and enzymes from Saccharomyces cerevisiae and Kluyveromyces marxianus (2000)
    Springer
    Current genetics 38 (2000), S. 264-270 
    Details
    ISSN: 1432-0983
    Keywords: Key words Endopolygalacturonase ; Saccharomyces cerevisiae ; Kluyveromyces marxianus ; Pectinase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The gene encoding endopolygalacturonase (EC 3.2.1.15) has been cloned, sequenced and expressed from three strains of Saccharomyces cerevisiae (including non-secretors) and three strains of Kluyveromyces marxianus. Both control and coding regions showed small differences within each species, one including loss of a potential glycosylation site. Two non-secreting S. cerevisiae strains (FY1679 and var. uvarum) had non-transcribed copies of functional genes. Maximum enzyme activity was achieved with the S. cerevisiae FY1679 gene in an expressing vector, with an enzyme activity of 51 μmol of reducing sugar released from polygalacturonic acid μg protein−1 min−1, the highest so far reported for a yeast.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s002940000160
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  • 9
    Electronic Resource
    Electronic Resource
    Recessive mutations in SUP35 and SUP45 genes coding for translation release factors affect chromosome stability in Saccharomyces cerevisiae (2000)
    Springer
    Current genetics 37 (2000), S. 285-291 
    Details
    ISSN: 1432-0983
    Keywords: Key words Translation release factors ; Chromosome stability ; Microtubules ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Chromosome stability in suppressor mutants for SUP35 and SUP45 genes coding for translation release factors was studied. We obtained spontaneous and UV-induced sup35 or sup45 mutants in a haploid strain disomic for chromosome III and tested the stability of an extra copy of this chromosome. The majority of the mutants showed increased chromosome instability. This phenotype was correlated with an increased sensitivity to the microtubule-poisoning drug benomyl which affects chromosome segregation at anaphase. Our data suggest that termination-translation factors eRF3 and eRF1 control chromosome transmission at mitotic anaphase in Saccharomyces cerevisiae.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s002940050529
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  • 10
    Electronic Resource
    Electronic Resource
    Yeast Intracellular Water Determination by Thermogravimetry (2000)
    Springer
    Journal of thermal analysis and calorimetry 59 (2000), S. 643-648 
    Details
    ISSN: 1572-8943
    Keywords: drying ; intracellular water ; Saccharomyces cerevisiae ; TG
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The intracellular water content of a microorganism is an important parameter which is a determinant factor of its physiological properties. It is usually measured by complex and time consuming procedures. Thermogravimetry using infrared balance has been used for this purpose, through the identification of different drying steps occurring during the analysis. This work employs the same method with much smaller samples, using conventional thermogravimetric equipment in a simpler and faster way than other conventional procedures. Commercial yeast (Saccharomyces cerevisiae ) washed samples are analyzed in isothermal procedures which are run in about 30 min. The drying rate curve, when plotted as a function of the residual mass of the cells, allows the identification of the step where the intracellular water is lost and the determination of its content. The obtained values, on extracellular water free basis, are in the range of 65 to 69% and agree with those measured by other techniques.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1010172830355
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  • 11
    Electronic Resource
    Electronic Resource
    Molecular Modeling of the Complexes between Saccharomyces cerevisiae Phosphoenolpyruvate Carboxykinase and the ATP Analogs Pyridoxal 5′-Diphosphoadenosine and Pyridoxal 5′-Triphosphoadenosine. Specific Labeling of Lysine 290 (2000)
    Springer
    The protein journal 19 (2000), S. 67-73 
    Details
    ISSN: 1573-4943
    Keywords: Homology modeling ; rotational energy barrier ; simulated annealing ; pyridoxal 5′-diphosphoadenosine ; pyridoxal 5′-triphosphoadenosine ; Saccharomyces cerevisiae ; phosphoenolpyruvate carboxykinase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Molecular mechanics calculations have been employed to obtain models of the complexes between Saccharomyces cerevisiae phosphoenolpyruvate (PEP) kinase and the ATP analogs pyridoxal 5′-diphosphoadenosine (PLP-AMP) and pyridoxal 5′-triphosphoadenosine (PLP-ADP), using the crystalline coordinates of the ATP-pyruvate-Mn2+-Mg2+ complex of Escherichia coli PEP carboxykinase [Tari et al. (1997), Nature Struct. Biol. 4, 990–994]. In these models, the preferred conformation of the pyridoxyl moiety of PLP-ADP and PLP-AMP was established through rotational barrier and simulated annealing procedures. Distances from the carbonyl-C of each analog to ε-N of active-site lysyl residues were calculated for the most stable enzyme-analog complex conformation, and it was found that the closest ε-N is that from Lys290, thus predicting Schiff base formation between the corresponding carbonyl and amino groups. This prediction was experimentally verified through chemical modification of S. cerevisiae PEP carboxykinase with PLP-ADP and PLP-AMP. The results here described demonstrate the use of molecular modeling procedures when planning chemical modification of enzyme-active sites.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1007099010762
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  • 12
    Electronic Resource
    Electronic Resource
    Two new species and one new variety of Agaricales from central Honshu, Japan (2000)
    Springer
    Mycoscience 41 (2000), S. 15-23 
    Details
    ISSN: 1618-2545
    Keywords: Agaricales ; Clitocybe trogioides var.odorifera ; Gerronema nemorale ; Psathyrella cineraria ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Two new species and one new variety of Agaricales are described and illustrated from central Honshu, Japan:Clitocybe trogioides var.odorifera var. nov. (subgenusCystoclitus sectionCystoclitus), forming white, infundibuliform basidiomata, was collected from leaf litter in theQuercus-Pasania forests;Gerronema nemorale sp. nov. (sectionXanthophylla), forming small, olivaceous, omphalinoid basidiomata, was found on dead fallen twigs in theQuercus-Pasania forests;Psathyrella cineraria sp. nov. (subgenusMycophylla sectionArgillosporae), forming basidiomata covered by detersile, dark grey, fibrillose-squamulose veil, was found on decayed wood ofQuercus myrsinaefolia.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF02464381
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  • 13
    Electronic Resource
    Electronic Resource
    Diaporthe kyushuensis sp. nov., the teleomorph of the causal fungus of grapevine swelling arm in Japan, and its anamorphPhomopsis vitimegaspora (2000)
    Springer
    Mycoscience 41 (2000), S. 111-114 
    Details
    ISSN: 1618-2545
    Keywords: Diaporthe kyushuensis ; grapevine swelling arm ; Phomopsis vitimegaspora ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Diaporthe kyushuensis sp. nov. is described and named as the teleomorph of causal fungus of grapevine swelling arm. The anamorph of the fungus isPhomopsis vitimegaspora.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF02464318
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  • 14
    Electronic Resource
    Electronic Resource
    Cronartium orientale, sp. nov., segregation of the pine gall rust in eastern Asia fromCronartium quercuum (2000)
    Springer
    Mycoscience 41 (2000), S. 115-122 
    Details
    ISSN: 1618-2545
    Keywords: distribution ; Pinus ; Quercus ; taxonomy ; Uredinales
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Asian pine gall rust, which has hitherto been assigned toCronartium quercuum distributed in North America, is described asC. orientale, sp. nov. The spermogonial and aecial states occur on hard pines, and the uredinial and telial states occur on various oaks.Cronartium orientale has globose, almost hyaline basidiospores in contrast to the ellipsoid, yellow-orange ones of North AmericanC. quercuum s.l. Characteristics of the new rust species in morphology, DNA analysis, and host alternation are discussed.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF02464319
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  • 15
    Electronic Resource
    Electronic Resource
    Involvement of the Inverted Repeat of the yeast 2-micron plasmid in Flp site-specific and RAD52-dependent homologous recombination (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 81-89 
    Details
    ISSN: 1617-4623
    Keywords: Key words Flp recombinase ; Site-specific recombination ; Homologous recombination ; RAD52 ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Site-specific recombination within the Saccharomyces cerevisiae 2-micron DNA plasmid is catalyzed by the Flp recombinase at specific Flp Recognition Target (FRT) sites, which lie near the center of two precise 599-bp Inverted Repeats (IRs). However, the role of IR DNA sequences other than the FRT itself for the function of the Flp reaction in vivo is not known. In the present work we report that recombination efficiency differs depending on whether the FRT or the entire IR serves as the substrate for Flp. We also provide evidence for the involvement of the IR in RAD52-dependent homologous recombination. In contrast, the catalysis of site-specific recombination between two FRTs does not require the function of RAD52. The efficiency of Flp site-specific recombination between two IRs cloned in the same orientation is about one hundred times higher than that obtained when only the two FRTs are present. Moreover, we demonstrate that a single IR can activate RAD52-dependent homologous recombination between two flanking DNA regions, providing new insights into the role of the IR as a substrate for recombination and a new experimental tool with which to study the molecular mechanism of homologous recombination.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/PL00008678
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  • 16
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    Ambient pH signalling in ascomycetous yeasts involves homologues of theAspergillus nidulans genes palF and palH (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 505-513 
    Details
    ISSN: 1617-4623
    Keywords: Key wordsYarrowia lipolytica ; Saccharomyces cerevisiae ; Ambient pH signalling ; Signal transduction ; Transmembrane protein
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In Yarrowia lipolytica, the transcription factor Rim101p mediates both pH regulation and control of mating and sporulation. Like its homologues PacC of Aspergillus nidulans and Rim101p of Saccharomyces cerevisiae, YlRim101p is activated by proteolytic C-terminal processing, which occurs in response to a signal transduced by a pathway involving several PAL gene products. We report here the cloning and sequencing of two of these genes, PAL2 and PAL3. PAL2 encodes a putative 632-residue protein with six possible transmembrane segments, which differs from the transmembrane proteins Rim9p of S. cerevisiae and PalI of A. nidulans, but is homologous to A. nidulans PalH and to the product of the ORF YNL294c, a predicted polypeptide of unknown function in S. cerevisiae. PAL3 encodes an 881-residue polypeptide that is homologous to PalF of A. nidulans and to a newly identified putative polypeptide of S. cerevisiae. Both PAL2 and PAL3 are expressed constitutively, regardless of ambient pH. Mutations in these genes affect growth at alkaline pH and sporulation in both Y. lipolytica and in S. cerevisiae. They affect invasiveness of haploid strains in S. cerevisiae only, and conjugation in Y. lipolytica only. These results highlight the conservation of the Pal pathway initially described in A. nidulans.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s004380051195
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  • 17
    Electronic Resource
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    Multiple copies of MRG19 suppress transcription of the GAL1 promoter in a GAL80 -dependent manner in Saccharomyces cerevisiae (2000)
    Springer
    Molecular genetics and genomics 262 (2000), S. 1113-1122 
    Details
    ISSN: 1617-4623
    Keywords: Key wordsGAL regulon ; Transcription ; Saccharomyces cerevisiae ; Galactose suppression
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A plasmid clone that suppresses galactose toxicity in a gal7 yeast strain has been isolated from a multicopy genomic DNA library. Molecular analysis revealed that the region responsible for the suppression of galactose toxicity corresponds to the ORF YPR030w, which was named MRG19. A CEN-based plasmid carrying the above ORF was unable to suppress the toxicity. Galactokinase activity was substantially reduced in cell extracts obtained from transformants bearing multiple copies of MRG19. Multiple copies of MRG19 were also able to suppress galactokinase expression driven by the CYC1 promoter but not the TEF1 promoter. Multiple copies of MRG19 could not suppress GAL1-driven galactokinase expression in a gal80 strain. However, MRG19-mediated suppression of CYC1-driven galactokinase expression was independent of GAL80 function. These results imply that multiple copies of MRG19 suppress galactokinase expression probably at the level of transcription. In agreement with this idea, multiple copies of MRG19 also suppress β-galactosidase expression driven by the GAL1 promoter in a GAL80-dependent manner. Disruption of MRG19 leads to an increase in the cell density at stationary phase in synthetic complete medium. MRG19 encodes a previously uncharacterised 124-kDa protein that shows no sequence homology to any known proteins.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/PL00008654
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  • 18
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    A newLeptographium species associated withTomicus piniperda in south-western China (2000)
    Springer
    Mycoscience 41 (2000), S. 573-578 
    Details
    ISSN: 1618-2545
    Keywords: China ; Leptographium ; morphology ; taxonomy ; Tomicus piniperda
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Tomicus species (Coleoptera: Scolytidae) are serious pests of pines with a wide distribution in Europe, Asia and America. In Yunnan, south-western China,T. piniperda has destroyed more than 0.5 million ha ofPinus yunnanensis in the past 15 years. A blue stain fungus belonging to the genusLeptographium is associated with both the shoot-feeding and trunk-attacking stages of the beetle's life cycle. The fungus is morphologically similar to the anamorph ofOphiostoma crassivaginatum and toL. pyrinum, which are both characterised by short robust conidiophores and hyphae covered by a granular layer. Both these species have been isolated from conifers and are associated with insects. After comparing the fungus fromT. piniperda with similarLeptographium species, using light and scanning electron microscopy, we concluded that it represents a new taxon, which is described here asL. yunnanense sp. nov.
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    Species, Demes, and the Omega Taxonomy: Gilmour and The NewSystematics (2000)
    Springer
    Biology and philosophy 15 (2000), S. 349-388 
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    ISSN: 1572-8404
    Keywords: cline ; definition ; deme ; evolutionary synthesis ; experimental taxonomy ; J. Heslop-Harrison ; J.S. Huxley ; J.S.L. Gilmour ; nominalism ; systematics ; Systematics Association ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Philosophy
    Notes: Abstract The word ``deme'' was coined by the botanists J.S.L. Gilmour and J.W.Gregor in 1939, following the pattern of J.S. Huxley's ``cline''. Its purposewas not only to rationalize the plethora of terms describing chromosomaland genetic variation, but also to reduce hostility between traditionaltaxonomists and researchers on evolution, who sometimes scorned eachother's understanding of species. A multi-layered system of compoundterms based on deme was published by Gilmour and J. Heslop-Harrison in1954 but not widely used. Deme was adopted with a modified meaning byzoologists leading the evolutionary synthesis – Huxley, Simpson, Wright,and Mayr. Connections are shown between Gilmour's ideas around definingthe deme, his role in founding the Systematics Association, and his chapter``Taxonomy and Philosophy'' in the book The New Systematics. Thishistorical episode raises questions about the role of carefully-definedwords in scientific practice.
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    A new variety ofCortinarius elatior from Japan (2000)
    Springer
    Mycoscience 41 (2000), S. 87-89 
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    ISSN: 1618-2545
    Keywords: Cortinarius elatior var.albipes ; Cortinarius Sect.Defibulati ; new variety ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cortinarius elatior var.albipes var. nov., found in the deciduous forest is described and illustrated. It is distinguished from the type variety by having a white stipe and longer spores. The differences betweenCortinarius elatior var.albipes and similar taxa are briefly discussed.
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    Ceratostomella hyalocoronata, a new pyrenomycete from a stream in southern China (2000)
    Springer
    Mycoscience 41 (2000), S. 167-169 
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    ISSN: 1618-2545
    Keywords: East Asia ; freshwater fungi ; taxonomy ; tropical mycology ; Xylariales
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Ceratostomella hyalocoronata is described and illustrated as a new species from old decaying wood immersed in a stream in Guangdong Province, southern China. It is compared toC. hyalostoma, a temperate terrestrial species.
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    Three new marine ascomycetes from driftwood in Australia sand dunes (2000)
    Springer
    Mycoscience 41 (2000), S. 379-388 
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    ISSN: 1618-2545
    Keywords: arenicolous ; marine fungi ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Caryospora australiensis sp. nov.,Platystomum scabridisporum sp. nov. andSavoryella melanospora sp. nov. are described from driftwood collected from a sand dune at Rye, on the Mornington Peninsula Nature Park, Victoria, Australia. These species are compared with other taxa in these and related genera.
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    Two underscribed heterobasidiomycetes from Ontario (2000)
    Springer
    Mycoscience 41 (2000), S. 371-377 
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    ISSN: 1618-2545
    Keywords: Platygloea ; Platygloeales ; Sigmogloea ; taxonomy ; Tremellales
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Specimens of two heterobasidiomycetous species, collected in Ontario and studied respectively by H. S. Jackson and R. F. Cain, are described as new; they arePlatygloea jacksonii andSigmogloea tremelloidea. P. jacksonii is characterized by small basidia and basidiospores and by sympodially developing conidia.Sigmogloea tremelloidea is an anomalous taxon with cylindric, mostly transversely septate (“auricularioid”) basidia, but some features suggest a possible relationship to the Tremellales.
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    Cortinarius purpurascens var.largusoides andCortinarius herpeticus var.fageticola new to Japan (2000)
    Springer
    Mycoscience 41 (2000), S. 407-410 
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    ISSN: 1618-2545
    Keywords: Cortinarius purpurascens var.largusoides ; Cortinarius herpeticus var.fageticola ; Cortinarius Sect.Scauri ; mycoflora ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Two species ofCortinarius Sect.Scauri collected in forests ofQuercus serrata andQ. mongolica var.grosseserrata, Q. serrata andFagus crenata, orQ. mongolica var.grosseserrata andF. crenata in Niigata prefecture were identified asCortinarius purpurascens var.largusoides andC. herpeticus var.fageticola, new to Japan. Macro- and microscopical descriptions of each species are given.
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    Intraspecific Variation in the Vocalizations and Hand Pad Morphology of Southern Lesser Bush Babies (Galago moholi): A Comparison with G. senegalensis (2000)
    Springer
    International journal of primatology 21 (2000), S. 537-555 
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    ISSN: 1573-8604
    Keywords: galago ; taxonomy ; vocalization ; morphology ; zoogeography
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Previous studies have shown the taxonomic value of vocal repertoires and hand (volar) pad characteristics in the classification of cryptic nocturnal primates such as bush babies. However, no study included quantitative comparisons within the geographical range of any one species. We investigated levels of intraspecific variation in calls and hand pad characteristics of the southern lesser bush baby (Galago moholi), using the northern lesser bush baby (Galago senegalensis) for interspecific comparisons. Examination of calls recorded from different regions along a transect of 1500 km across southern Africa revealed low levels of intraspecific variation in Galago moholi, whereas comparisons with homologous call-types in G. senegalensis revealed them to be significantly different. Volar pad measurements across the ranges of both species also showed low levels of intraspecific variation and relatively high interspecific variation. These findings demonstrate that vocal and volar pad characteristics can be used as consistent measures of difference between species that look almost identical. These methods provide a practical means of distinguishing between cryptic species, whether in the field, in captivity, or, in the case of volar pads, of preserved specimens.
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    Taxonomic Revision of Mouse Lemurs (Microcebus) in the Western Portions of Madagascar (2000)
    Springer
    International journal of primatology 21 (2000), S. 963-1019 
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    ISSN: 1573-8604
    Keywords: mouse lemurs ; Microcebus ; taxonomy ; revision ; new species
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genus Microcebus (mouse lemurs) are the smallest extant primates. Until recently, they were considered to comprise two different species: Microcebus murinus, confined largely to dry forests on the western portion of Madagascar, and M. rufus, occurring in humid forest formations of eastern Madagascar. Specimens and recent field observations document rufous individuals in the west. However, the current taxonomy is entangled due to a lack of comparative material to quantify intrapopulation and intraspecific morphological variation. On the basis of recently collected specimens of Microcebus from 12 localities in portions of western Madagascar, from Ankarana in the north to Beza Mahafaly in the south, we present a revision using external, cranial, and dental characters. We recognize seven species of Microcebus from western Madagascar. We name and describe 3 spp., resurrect a previously synonymized species, and amend diagnoses for Microcebus murinus (J. F. Miller, 1777), M. myoxinus Peters, 1852, and M. ravelobensis Zimmermann et al., 1998.
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    Phylogenetic Relationships of Spider Monkeys (Ateles) Based on Mitochondrial DNA Variation (2000)
    Springer
    International journal of primatology 21 (2000), S. 381-420 
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    ISSN: 1573-8604
    Keywords: phylogenetics ; taxonomy ; systematic ; Ateles ; Cebidae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Our goal was to determine phylogenetic relationships among geographically and taxonomically distinct haplotypes of spider monkeys (Ateles) based on DNA sequence variation for the mitochondrial DNA control region and cytochrome c oxidase subunit II gene. We obtained samples from most previously recognized subspecies of Ateles, ranging from Central America throughout the Amazon Basin, to determine phylogenetic relationships among racially recognized groups. Comparison of DNA sequences using both parsimony analysis and genetic distance analysis produced phylogenetic relationships that were very similar for each genetic region. We analyzed the phylograms produced, along with associated bootstrap support, confidence probabilities, and genetic distances between taxonomic groups, to identify four monophyletic species of Ateles: Ateles paniscus, composed of haplotypes from the northeastern Amazon Basin; A. belzebuth in the southern Amazon Basin; A. hybridus, located primarily along the Magdalena River valley of Colombia; and A. geoffroyi, which includes two former species: A. geoffroyi and A. fusciceps. This arrangement is contradictory to long-held taxonomies of Ateles based on pelage variation and is similar to a recent analysis based on craniodental variation. Results of this investigation suggest patterns of gene flow, evolutionary relationships, and speciation patterns that are more plausible than previous pelage-based taxonomies, which required seemingly impossible patterns of gene flow. Conservation efforts aimed at protecting Ateles, one of the Neotropics most endangered genera, will also benefit from the findings presented in this paper.
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    Use of Vocal Fingerprinting for Specific Discrimination of Gray (Microcebus murinus) and Rufous Mouse Lemurs (Microcebus rufus) (2000)
    Springer
    International journal of primatology 21 (2000), S. 837-852 
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    ISSN: 1573-8604
    Keywords: vocalization ; sexual advertisement ; predator advertisement ; taxonomy ; evolution ; mouse lemur ; primate ; Madagascar
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Advertisement calls are often important noninvasive tools for discriminating cryptic species and for assessing specific diversity and speciation patterns in nature. We investigated the contribution of these calls to uncover specific diversity in nocturnal Malagasy lemurs. We compared sexual advertisement and predator advertisement calls of two mouse lemur species, western gray and eastern rufous mouse lemurs (Microcebus murinus and M. rufus, respectively) living in two contrasting habitats (dry deciduous vs. rain forest), and analyzed them statistically. Both species emitted several highly variable whistle calls in the context of predator-avoidance. Intrapopulation variation was high and overlapped interspecific variation. Sexual advertisement calls, given in the mating context, displayed a totally distinct, species-specific acoustic structure. Whereas gray mouse lemurs produced rapidly multifrequency modulated, long trill calls, rufous mouse lemurs gave slowly frequency-modulated short chirp calls. Our results suggest specific status for gray and rufous mouse lemurs and indicate the importance of predation and social needs in shaping vocal communication.
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    Epicuticular wax morphology and the taxonomy ofRosa (sectionCaninae, subsectionRubiginosae) (2000)
    Springer
    Plant systematics and evolution 221 (2000), S. 107-112 
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    ISSN: 1615-6110
    Keywords: Rosaceae ; Rosa ; Caninae ; epicuticular waxes ; taxonomy ; hybridism
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Classification within the genusRosa is problematic due to ± continuous variation of morphological characters. The dogroses, (Rosa, sectionCaninae) are classified only by their unique meiotic system not by directly visible characters. The intrasectional structure remains insufficient, as the characters (glands, hairs and prickles) are known to exhibit great morphological divergence affected by both genetic plasticity and environmental influences. Taxonomy of dogroses follows a highly artificial system which allows us to identify morphospecies, which are not necessarily evolutionary species. However, SEM-studies in theCaninae revealed that all taxa of the subsectionRubiginosae are characterised by a granule type of epicuticular waxes, whereas members from the other subsections (with three exceptions) form triangular rodlets. Comparison with specimens grown under the same conditions confirmed these findings on natural populations and additionally revealed that following artificial hybridism, offspring develop the maternal type of wax structure due to the matroclinal inheritance in this section.
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    Software dependent phenetic relationships of non-nodulating African species ofAcacia (2000)
    Springer
    Plant systematics and evolution 220 (2000), S. 139-146 
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    ISSN: 1615-6110
    Keywords: Acacia ; classification ; Leguminosae ; morphology ; phenetics ; RAPD ; software ; taxonomy ; UPGMA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The phenetic analysis of non-nodulatingAcacia species by Harrier et al. (1997) was repeated to illustrate how different computer programs may generate alternative UPGMA trees for the very same data, even in the absence of data input order effects (ties). For example, all Harrier et al.'s UPGMA dendrograms produced by software from the Scottish Agricultural Statistics Service differed from those obtained by the packages NTSYS and MVSP87. Particularly, the positions ofA. albida, A. rovumae, andA. pentagona, as well as the relationships betweenDiacanthae andTriacanthae were affected by this phenomenon. Hence, whenever clustering techniques are used, care should be taken to consider possible software-dependent caveats and artefacts. Nevertheless, all programs provided clusterings that largely coincided with the subgeneric and sectional groupings proposed by Vassal (1972) although the positions of some species varied depending on whether morphological or molecular data were considered (e.g.A. albida andA. rovumae).
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    Secretory cavities and pellucid dots in leaflets ofLonchocarpus (Leguminosae, Papilionoideae, Millettieae) (2000)
    Springer
    Plant systematics and evolution 221 (2000), S. 61-68 
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    ISSN: 1615-6110
    Keywords: Leguminosae ; Papilionoideae ; Lonchocarpus ; leaflets ; secretory cavities ; false secretory cavities ; pellucid dots ; glands ; anatomy ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The occurrence of leaflet secretory cavities in 23 Brazilian species ofLonchocarpus was surveyed anatomically and compared with data from external morphology (presence of pellucid dots) to evaluate their taxonomic significance. This study revealed three cases: presence of secretory cavities associated with pellucid dots, pellucid dots corresponding to false secretory cavities, and absence of pellucid dots and secretory cavities. These results indicate that in this genus the “glandular pellucid dots” cited in morphological descriptions do not always correspond to secretory cavities, and that their nature must always be confirmed by histological sections. Secretory cavities have systematic significance at subgeneric taxonomic level for the genusLonchocarpus.
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    New chromosome counts inStreptocarpus (Gesneriaceae) from Madagascar and the Comoro Islands and their taxonomic significance (2000)
    Springer
    Plant systematics and evolution 224 (2000), S. 173-182 
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    ISSN: 1615-6110
    Keywords: Gesneriaceae ; Streptocarpus ; Chromosome numbers ; growth patterns ; taxonomy ; Africa ; Comoro Islands ; Madagascar
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This study records the chromosome numbers of 10 species ofStreptocarpus; nine of the counts are new. With the exception ofS. buchananii of mainland Africa, all the results are for plants endemic to Madagascar and the Comoro Islands. While there is a strong correlation between basic number and growth form in the two subgenera of the genus on the African mainland (x = 15 among caulescent species in subgenusStreptocarpella; x = 16 among acaulescent species in subgenusStreptocarpus), the situation appears more complex among Madagascan and Comoro Island species. One notable example of deviation from this correlation is shown byS. papangae, a shrubby caulescent species, with 2n = 32 (x = 16). Polyploidy in the genus appears to be absent on mainland Africa, but is present in Madagascar and the Comoro Islands, ranging from tetraploidy to octoploidy. Evolutionary implications of the cytological observations are considered.
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    Inter- and intraspecific genetic variation inHippophae (Elaeagnaceae) investigated by RAPD markers (2000)
    Springer
    Plant systematics and evolution 225 (2000), S. 85-101 
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    ISSN: 1615-6110
    Keywords: Elaeagnaceae ; Hippophae ; sea buckthorn ; Systematics ; taxonomy ; genetic variation ; RAPD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Genetic diversity has been investigated by the application of molecular markers in, for the first time, all the taxa recognised in recent treatises of the genusHippophae. RAPD (random amplified polymorphic DNA) analyses were conducted with 9 decamer primers, which together yielded 219 polymorphic markers. We found 16 fixed RAPD markers, i.e. markers that either occurred in all plants of a population or were absent from all plants. Several of these markers were useful for analysis of interspecific relationships, whereas others can be considered as taxon-specific markers. Clustering of taxa and populations in our neighbour-joining based dendrogram was in good agreement with some recently suggested taxonomic treatises ofHippophae. Amount and distribution of genetic variability varied considerably between species. Partitioning of molecular variance withinH. rhamnoides supported earlier findings that a considerable part of the total variance resides among subspecies (59.6%) Within-population variability also differed considerably. Percentage polymorphic RAPD loci and Lynch and Milligan within-population gene diversity estimates showed relatively high values for some species close to the geographic centre of origin in Central Asia, e.g.H. tibetana and the putatively hybridogenousH. goniocarpa. Spatial autocorrelation analyses performed on 12 populations ofH. rhamnoides revealed positive autocorrelation of allele frequencies when geographic distances ranged from 0 to 700 km, and no or negative autocorrelation at higher distances. At distances between 700 and 1900 km, we observed deviations from the expected values with strongly negative autocorrelation of allele frequencies. A corresponding relationship between geographic and genetic distances could not be found when the analysis instead was based on one population from each of 8 species.
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    Structure-function relationships in replication origins of the yeast Saccharomyces cerevisiae: higher-order structural organization of DNA in regions flanking the ARS consensus sequence (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 854-866 
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    ISSN: 1617-4623
    Keywords: Key words Autonomously replicating sequence (ARS) ; Anti-bent DNA ; DNA structure ; Replication origin ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In order to better understand the involvement of the DNA molecule in the replication initiation process we have characterized the structure of the DNA at Autonomously Replicating Sequences (ARSs) in Saccharomyces cerevisiae. Using a new method for anti-bent DNA analysis, which allowed us to take into account the bending contribution of each successive base plate, we have investigated the higher-order structural organization of the DNA in the region which immediately surrounds the ARS consensus sequence (ACS). We have identified left- and right-handed anti-bent DNAs which flank this consensus sequence. The data show that this organization correlates with an active ACS. Analysis of the minimum nucleotide sequence providing ARS function to plasmids reveals an example where the critical nucleotides are restricted to the ACS and the right-handed anti-bent DNA domain, although most of the origins considered contained both left- and right-handed anti-bent DNAs. Moreover, mutational analysis shows that the right-handed form is necessary in order to sustain a specific DNA conformation which is correlated with the level of plasmid maintenance. A model for the role of these individual structural components of the yeast replication origin is presented. We discuss the possible role of the right-handed anti-bent DNA domain, in conjunction with the ACS, in the process of replication initiation, and potentialities offered by the combination of left- and right-handed structural components in origin function.
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    Characterization of staurosporine-sensitive mutants of Saccharomyces cerevisiae: vacuolar functions affect staurosporine sensitivity (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 877-888 
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    ISSN: 1617-4623
    Keywords: Key words Staurosporine ; Vacuolar-type proton pumping ATPase ; Vacuolar protein sorting ; ATP-binding cassette transporter ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Mutations at several loci affect the sensitivity of the yeast Saccharomyces cerevisiae to staurosporine. We report here the characterization of novel staurosporine- and temperature-sensitive mutants (stt). Cloning and integration mapping showed that the genes STT2/STT6, STT5, STT7, STT8 and STT9 are allelic to VPS18, ERG10, GPI1, VPS34 and VPS11, respectively. The products of ERG10 and GPI1, respectively, catalyze mevalonate and glycosyl phosphatidylinositol anchor synthesis, while VPS18 and VPS11 genes belong to the class C VPS (Vacuolar Protein Sorting) genes, and the VPS34 gene is classified as a class D VPS. Therefore, staurosporine sensitivity is affected by ergosterol and glycolipid biosynthesis and by vacuolar functions. We found that other vps mutants belonging to classes C and D exhibit staurosporine sensitivity, and that they show calcium sensitivity and fail to grow on glycerol as the sole carbon source; both of the last two characteristics are shared by vacuolar H+-ATPase mutants (vma). As vma mutants were also found to show staurosporine-sensitive growth, staurosporine sensitivity is likely to be affected by acidification of the vacuole. Moreover, wild type yeast cells are more sensitive to staurosporine in alkaline media than in acidic media, suggesting that staurosporine is exported from the cytosol by H+/drug antiporters. Pleiotropic drug resistance (PDR) genes also provide some resistance to staurosporine, because Δpdr5, Δsnq2 and Δyor1 strains are more sensitive to staurosporine than the wild-type strain. This suggests that staurosporine is also exported by the ATP-binding cassette (ABC) transporters on the plasma membrane. vma mutants and vps mutants of classes C and D vps are sensitive to hygromycin B and vanadate, while ABC transporter-depleted mutants do not show such sensitivity, indicating that two systems differ in their ability to protect the cell against different types of drug.
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    MUS81 encodes a novel Helix-hairpin-Helix protein involved in the response to UV- and methylation-induced DNA damage in Saccharomyces cerevisiae (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 812-827 
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    ISSN: 1617-4623
    Keywords: Key words DNA repair ; Helix-hairpin-Helix motif ; Methylmethane sulfonate (MMS) ; Saccharomyces cerevisiae ; UV radiation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The gene MUS81 (Methyl methansulfonate, UV sensitive) was identified as clone 81 in a two-hybrid screen using the Saccharomyces cerevisiae Rad54 protein as a bait. It encodes a novel protein with a predicted molecular mass of 72,316 (632 amino acids) and contains two helix-hairpin-helix motifs, which are found in many proteins involved in DNA metabolism in bacteria, yeast, and mammals. Mus81p also shares homology with motifs found in the XPF endonuclease superfamily. Deletion of MUS81 caused a recessive methyl methansulfonate- and UV-sensitive phenotype. However, mus81Δ cells were not significantly more sensitive than wild-type to γ-radiation or double-strand breaks induced by HO endonuclease. Double mutant analysis suggests that Rad54p and Mus81p act in one pathway for the repair of, or tolerance to, UV-induced DNA damage. A complex containing Mus81p and Rad54p was identified in immunoprecipitation experiments. Deletion of MUS81 virtually eliminated sporulation in one strain background and reduced sporulation and spore viability in another. Potential homologs of Mus81p have been identified in Schizosaccharomyces pombe, Caenorhabditis elegans and Arabidopsis thaliana. We hypothesize that Mus81p plays a role in the recognition and/or processing of certain types of DNA damage (caused by UV and MMS) during repair or tolerance processes involving the recombinational repair pathway.
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    Bdelloid rotifers from Korea (2000)
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    Hydrobiologia 439 (2000), S. 91-101 
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    ISSN: 1573-5117
    Keywords: Rotifera ; Bdelloidea ; Korea ; taxonomy ; biogeography
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Twenty-five samples from 18 terrestrial and/or freshwater habitats in the eastern part of Korea yielded 38 new records of bdelloid rotifers, 22 of which are new to the Asian fauna. Among these Korean new records, Dissotrocha aculeata reversa Berzins and Habrotrocha plana Milne were recorded outside their type localities for the first time, and Macrotrachela bullata (Murray) was reported only from two countries after its description. Bradyscela granulosa de Koning, Habrotrocha gracilis gracilis Montet, Macrotrachela latior Donner, Philodina duplicalcar (de Koning) and P. rugosa coriacea Bryce are recorded outside Europe for the first time. The taxonomy and distribution of these rare species are discussed.
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    Interpopulation differentiation within C. kolensis and C. strenuus strenuus (Crustacea: Copepoda): evidence from cytogenetic methods (2000)
    Springer
    Hydrobiologia 417 (2000), S. 37-42 
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    ISSN: 1573-5117
    Keywords: taxonomy ; cytogenetic methods ; Cyclops kolensis ; Cyclops strenuus strenuus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Comparisons of behavior of chromosomes and characteristics of eliminated chromatin during anaphase of chromatin diminution divisions were made of Russian and German populations of Cyclops kolensis and Cyclops strenuus strenuus. Differences in cytogenetic features included timing and amount of eliminated chromatin. Differences were also marked in duration of chromatin diminution, as well as timing and location of eliminated DNA between Russian and German populations of C. strenuus strenuus. In contrast to the German population of C. strenuus, the Russian population of C. strenuus strenuus did not exhibit gonomery.
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    Key to the identification of the genera of bdelloid rotifers (2000)
    Springer
    Hydrobiologia 418 (2000), S. 73-80 
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    ISSN: 1573-5117
    Keywords: Rotifera ; Bdelloidea ; pictorial key ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We propose a simple, user-friendly key joined to a pictorial key to the bdelloid genera, in the attempt to make bdelloid identification more accessible to non-bdelloid-specialists. The key is mostly based on illustrations rather than on descriptions, and is accompanied by an introduction of the main features readily observable in active bdelloids.
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    The morphology of the upper lip of Cypridoidea ostracods: taxonomic and phylogenetic significance (2000)
    Springer
    Hydrobiologia 418 (2000), S. 169-184 
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    ISSN: 1573-5117
    Keywords: ostracods ; upper lip ; taxonomy ; phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This paper represents the first study of the morphology of the upper lip (labrum) and hypostome of ostracods using scanning electron microscopy (S.E.M.). There is considerable variation in the upper lip morphology of the 23 species of Cypridoidea (Podocopina) ostracods used in this study. The detail of the upper lip morphology of each species is very distinctive, so that species determination can be made on this feature alone, but it is not useful in diagnosing genera or subfamilies. The hypostome is not readily studied due to the large amounts of dense pseudochaetae (small, setae-like projections) protruding from it and hence is considered not to be a useful taxonomic feature. Several features of the upper lip and mouth region are documented for the first time. Comparisons of the general morphology of the upper lips of Recent ostracods with the upper lip of the fossil ostracod Pattersoncypris micropapillosa Bate, 1972, indicate that there has been very conservative evolution in these features since the Cretaceous.
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    Ryocalanus spinifrons, a new species of Ryocalanidae (Copepoda: Calanoida), from the southwestern part of Sagami Bay, Japan (2000)
    Springer
    Hydrobiologia 432 (2000), S. 127-131 
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    ISSN: 1573-5117
    Keywords: new species ; Ryocalanoid copepod ; taxonomy ; benthopelagic ; Sagami Bay
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A new Ryocalanoid copepod, Ryocalanus spinifrons, collected by the MTD net system at a depth of 1400 m from the southwestern part of Sagami Bay, Japan, is described. The new species is morphologically very close to R. infelix Tanaka, 1956 (female unknown) from the Izu region of Sagami Bay. It is distinguished from other species by the presence of 12 long spinules on the ventral inner side of the fifth pedigerous somite, nine setae on the coxal epipodite of the maxillule and nine large robust spinules on the coxal segment of the fourth leg. The row of five robust spines on the paragnath distinguishes R. spinifrons.
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    Taxonomic analysis of species characters for copepodid instars 4 and 5 of the subfamily Eucyclopinae of European Russia (2000)
    Springer
    Hydrobiologia 417 (2000), S. 57-79 
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    ISSN: 1573-5117
    Keywords: copepodid instars ; Eucyclopinae ; taxonomy ; morphological characters
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Morphological characters useful for taxonomic identification of older copepodid instars of the subfamily Eucyclopinae were studied among 14 species of Eucyclops, Macrocyclops, Ectocyclops, Paracyclops and Tropocyclops known from European Russia. For taxonomic analysis, the following elements of copepodid morphology were chosen: armament and proportion of furcal rami; morphology of swimming legs and reduced 5th and 6th legs; antennule segmentation; and relative body length of copepodid instars in comparison with the female length. Changes in morphology of major copepodid instars of the subfamily Eucyclopinae during ontogenetic development are traced and noticeable differences among five genera and 14 species are described. These differences among major copepodid stages may be important for both taxonomic and ecological analysis. For taxonomy, they provide information on development of sexes and species during maturation. For ecology they allow identification of the specimens at 4–5 copepodid instars in diapause. A key to major copepodid instars of the species from the subfamily Eucyclopinae which are known from limnetic habitats of the European part of Russia is presented.
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    Components of morphological variation in Baikalian endemial cyclopid Acanthocyclops signifer complex from different localities (2000)
    Springer
    Hydrobiologia 417 (2000), S. 25-35 
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    ISSN: 1573-5117
    Keywords: morphological variation ; fluctuating asymmetry ; taxonomy ; Copepoda ; Cyclopidae ; Acanthocyclops signifer ; Lake Baikal
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Use of traditional methods for morphological studies only permits the analysis of a small part of the information embodied in morphological structures. Besides comparing populations using the mean values of characters which allows one to estimate their morphological similarity, analysis of variation among individuals within a population can be informative. Variation among individuals consists of factorial and stochastic components. The factorial component is an upper estimate of genetic heterogeneity and thus permits one to evaluate the population's adaptability. The stochastic component (estimated by fluctuating asymmetry, i.e. random deviations from perfect bilateral symmetry), being a measure of developmental stability, is an indicator of a population's fitness. Assessment of measurement error is necessary for assessment of the true value of the stochastic component and for selection of the most informative characters. Such analysis allows one to extract additional information from morphological data in comparison with methods traditionally used on copepods. This approach was applied to an analysis of morphological variation in the study of the Baikalian endemic cyclopoid Acanthocyclops signifer (Mazepova) from three different isolated localities. Characters typically used in studies of taxonomy of this group are considered here. Measurement error was rather high (more than 50% of the stochastic component), which can be explained by technical difficulties of measuring the characters. All populations differ in the mean values of the characters. This shows the taxonomic heterogeneity of this group and reveals the necessity of its taxonomic revision. Populations also differ in the level of stochastic and factorial components of the total variance. The data are interpreted from the point of view of taxonomy and the possible evolution of the group.
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    Nitocrellopsis texana n. sp. from central TX (U.S.A.) and N. ahaggarensis n. sp. from the central Algerian Sahara (Copepoda, Harpacticoida) (2000)
    Springer
    Hydrobiologia 418 (2000), S. 81-97 
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    ISSN: 1573-5117
    Keywords: Harpacticoida ; new species ; redescription ; taxonomy ; troglobitics ; trans-Atlantic distribution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Nitocrellopsis texana n. sp. found in samples collected by SCUBA divers in Honey Creek Cave (Texas, U.S.A.) is described. This species is the first representative of this stygobitic taxon from a Northern American locality. The original description of N. ioneli (Dumont & Decraemer, 1975) is amended and the closely related N. ahaggarensis n. sp. is described from a well near Tamanghasset in the Ahaggar mountains in Algeria. The monophyly of Nitocrellopsis is discussed and its present day distribution is analyzed.
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    The dinoflagellate genus Prorocentrum along the coasts of the Mexican Pacific (2000)
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    Hydrobiologia 418 (2000), S. 111-121 
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    ISSN: 1573-5117
    Keywords: dinoflagellates ; Prorocentrum ; morphology ; taxonomy ; Mexican Pacific ; red tides
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We surveyed the dinoflagellate genus Prorocentrum Ehrenberg in Mexican Pacific waters, where it is rather common and sometimes causes red tides in coastal areas or shrimp farms. Material collected from Baja California and the Gulf of California was analyzed. Thirteen species were identified, all of them planktonic (although P. mexicanum is also epiphytic). All species are described by light microscopy, and most are also described by scanning electron microscopy; comments on morphology, taxonomy and distribution are made. Red tides were caused by P. dentatum, P. minimum and P. triestinum. Prorocentrum mexicanum and P. minimum were suspected of being toxic. Four species, previously reported in the Gulf of California, were not found. A total of 18 species, including the new records P. dactylum and P. lebourae have been to date reported from the Mexican Pacific.
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    Eucyclops dumonti sp.nov. from Central Mongolia (2000)
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    Hydrobiologia 441 (2000), S. 63-71 
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    ISSN: 1573-5117
    Keywords: Mongolia ; Eucyclops dumonti ; taxonomy ; zooplankton ; spring fauna
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Eucyclops dumonti sp.nov. is described from a shallow spring-fed lake in Central Mongolia. Data on its morphological variability are given, a comparison with the type population of Eucyclops serrulatus (Fischer, 1853) from St. Petersburg area is made, and its position relative to some closely related congeners is discussed.
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    Redescription of Diaphanosoma dubium Manuilova, 1964 (Branchiopoda: Ctenopoda: Sididae), and description of a new, related species (2000)
    Springer
    Hydrobiologia 441 (2000), S. 73-92 
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    ISSN: 1573-5117
    Keywords: Diaphanosoma dubium ; D. pseudodubium sp.nov. ; morphology ; taxonomy ; geographical distribution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The poorly known D. dubium Manuilova is redescribed on extensive material from more than 80 populations from the Russian Far East, Central Asia, Mongolia, China, Japan, Vietnam, the Philippines, Thailand, Malaysia, Bangladesh, India and Sri Lanka. Its morphological variability and geographical distribution are analysed and supplemented by notes on biology. The conspecificity of morphologically different distant populations is discussed. In the northern part of its range, D. dubium was long confused with D. brachyurum or D. leuchtenbergianum, and in the south with D. modigliani. It seems that the recent appearance of D. dubium in fish ponds of Uzbekistan and Kazakhstan was an introduction, together with Far Eastern fish. D. pseudodubium sp.nov., close to but markedly different, is described from two lakes in the lower Amur river system. D. dubium, D. pseudodubium, D. tropicum and D. modigliani s. str. form a group of related species, widely distributed in Eastern and Southern Asia.
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    Molecular genetic analyses of species boundaries in the sea (2000)
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    Hydrobiologia 420 (2000), S. 73-90 
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    ISSN: 1573-5117
    Keywords: sibling species ; taxonomy ; DNA ; electrophoresis ; allozymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The tools of molecular genetics have enormous potential for clarifying the nature and age of species boundaries in marine organisms. Below I summarize the genetic implications of various species concepts, and review the results of recent molecular genetic analyses of species boundaries in marine microbes, plants, invertebrates and vertebrates. Excessive lumping, rather than excessive splitting, characterizes the current systematic situation in many groups. Morphologically similar species are often quite distinct genetically, suggesting that conservative systematic traditions or morphological stasis may be involved. Some reproductively isolated taxa exhibit only small levels of genetic differentiation, however. In these cases, large population sizes, slow rates of molecular evolution, and relatively recent origins may contribute to the difficulty in finding fixed genetic markers associated with barriers to gene exchange. The extent to which hybridization blurs species boundaries of marine organisms remains a subject of real disagreement in some groups (e.g. corals). The ages of recently diverged species are largely unknown; many appear to be older than 3 million years, but snails and fishes provide several examples of more recent divergences. Increasingly sophisticated genetic analyses make it easier to distinguish allopatric taxa, but criteria for recognition at the species level are highly inconsistent across studies. Future molecular genetic analyses should help to resolve many of these issues, particularly if coupled with other biological and paleontological approaches.
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    A new Ceratium species (Dinophyceae) from Lake Doïrani, Macedonia, Greece (2000)
    Springer
    Hydrobiologia 424 (2000), S. 101-108 
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    ISSN: 1573-5117
    Keywords: Ceratium ; freshwater ; ecology ; morphology ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A new taxon of Ceratium is described from Lake Doïrani, Greece. It is proposed as a new species and named Ceratium monoceras. It differs morphologically from known species of Ceratium by having only one horn, the apical horn. Accordingly, the vegetative cells form cysts that have only one spine. Details of its ecology and occurence are given.
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    Nematodes from the Strait of Magellan and the Beagle Channel (Chile): the genera Cervonema and Laimella (Comesomatidae: Nematoda) (2000)
    Springer
    Hydrobiologia 427 (2000), S. 27-49 
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    ISSN: 1573-5117
    Keywords: taxonomy ; marine nematodes ; Cervonema ; Laimella ; the Strait of Magellan ; Chile
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Five species of Cervonema and four species of Laimella are described from the Strait of Magellan and the Beagle Channel, Chile, six species of which are new to science. Cervonema chilensisn. sp. and Cervonema hermanin. sp. are separated from other known species of Cervonema by a short cervical region (less than one head diameter from the front end to the anterior border of the amphids). Cervonema chilensisn. sp. is characterised by a tail length of 5 anal diameters with posterior half filiform; Cervonema hermani n. sp. is characterised by a tail length of 6–9 anal diameter and posterior part (75%) cylindrical. Cervonema shiaen. sp. is characterised by the cephalic seta 4 μm long, amphids 9–10 μm in diameter; spicules 16 μm long and 0.8–0.9 abd; tail 4.7–5.4 anal diameter and 50% posterior part filiform; 4–5 minute precloacal supplements. Laimella subterminatan. sp. is characterised by the subterminal position of the buccal cavity which separates it from the other species of the genus. Laimella annaen. sp. is characterised by the head diameter 9–11 μm, cephalic setae and external labial setae 9 + 5 μm long, respectively, amphids 7 μm in diameter; spicules 28–30 μm long; tail 14–17 anal diameter and posterior part (75%) filiform; 5 precloacal supplements. Laimella sandraen. sp. is very close to Laimella annaen.sp. in having similar cephalic sensilla, amphids and spicules. Laimella sandraen. sp., however, can be separated from L.annaen. sp. by the shape of head and the structure of sperm cells, the total body length and the cylindrical part of tail. Cervonema papillatum Jensen, 1988, C. tenuicauda (Stekhoven, 1950) and L. longicauda Cobb, 1920 are found in this area as well. The key of all known species of Cervonemaand Laimellais presented.
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    Description of a new Nipergasilus species (Family: Ergasilidae) from the gills of grey mullet (2000)
    Springer
    Hydrobiologia 428 (2000), S. 61-66 
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    ISSN: 1573-5117
    Keywords: parasitic Copepoda ; taxonomy ; new species ; grey mullet
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A new Nipergasilus species is described from the gills of the grey mullet Valamugil cunnesius from several localities in India and Pakistan. The new species is closely related to Nipergasilus bora (Yamaguti, 1939) which is also recorded here on three species of grey mullet. The genus Nipergasilus is redefined in order to accommodate the second species.
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    New species of Rhynchelmis (Clitellata, Lumbriculidae), with observations on the Nearctic species (2000)
    Springer
    Hydrobiologia 428 (2000), S. 1-59 
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    ISSN: 1573-5117
    Keywords: Clitellata ; Oligochaeta ; Lumbriculidae ; Rhynchelmis ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Nearctic species of Rhynchelmis (Lumbriculidae) are distinguished from the Palearctic group Rhynchelmis s. str. by longitudinal muscle bands that do not curl inwards. Six new species from western North America support the existence of two major groupings within the Nearctic fauna. Species in Group 1 are distinguished from other Rhynchelmis by large penial bulbs and multiple spermathecal diverticula. Within Group 1, Rhynchelmis yakimorum n. sp., Rhynchelmis monsserratus n. sp., Rhynchelmis gustafsoni n. sp. and Rhynchelmis utahensis n. sp. differ from the related Rhynchelmis (=Sutroa) rostrata in having short penes and spermathecae with 2 short, lobed diverticula. R. monsserratus is distinguished by a single, median spermatheca, R. gustafsoni has closely appressed, median spermathecae and atria, and R. utahensis differs in structural details of spermathecae and male pores. Rhynchelmis gilensis n. sp. has a single, median spermatheca with unbranched diverticula and distinctive nephridia. Redescription of material from the type localities of both Sutroa alpestris and R. rostrata supports their combination. Group 2, corresponding in part to Rhynchelmoides, is distinguished from Group 1 mostly by characters that are inconsistent or appear plesiomorphic. Within Group 2, Rhynchelmis saxosa n. sp. closely resembles Rhynchelmis alaskana, except for the absence of lateral blood vessels in posterior segments and distribution of prostates. Rhynchelmis elrodi and Rhynchelmis glandula consistently differ in presence of ventral glands and have different distributions, so their supposed synonymy is rejected.
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    New species of Metepsilonema (Nemata, Epsilonematidae) from the Channel and the Mediterranean Sea with a polytomous key for the identification of species of the genus (2000)
    Springer
    Hydrobiologia 429 (2000), S. 25-47 
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    ISSN: 1573-5117
    Keywords: marine nematodes ; Epsilonematidae ; Metepsilonema ; taxonomy ; key to species
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Four new species of Metepsilonema are described from sublittoral stations from the Channel and are mainly characterized: M. volutum sp.nov. by the large body size for the genus up to 460 μm, 118–121 well overlapping annuli and wide multispiral amphids; M. amphidoxum sp.nov. by 127–133 shortly overlapping annuli and sexual dimorphism in amphid size; M. comptum sp.nov. by 133–140 non-overlapping annuli, anteriormost annuli provided with a wide lumen and borders ornamented with ridges and M. corrugatum sp.nov. by 108–111 overlapping annuli provided with ridges). Additional information is provided for M. callosum together with a discussion on intraspecific variability. A new species of Metepsilonema spec. based on females only, is described but remain unnamed. M. comptum sp.nov. and M. corrugatum sp.nov. are also occurring in the Mediterranean Sea. A polytomous key to species level is presented.
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    The freeliving nematode genus Parodontophora Timm 1963 (Nematoda: Axonolaimidae) is not exclusively marine: Parodontophora limnophila sp. nov. from freshwater in China (2000)
    Springer
    Hydrobiologia 431 (2000), S. 205-210 
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    ISSN: 1573-5117
    Keywords: China ; freshwater ; Nematoda ; new species ; Parodontophora ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Parodontophora limnophila sp. nov. is described from Poyang Lake, the largest freshwater lake of China. It is characterized by having an amphid with its posterior end close to the base of the stoma, relatively short cephalic setae, opisthocephalic setae arranged as two subdorsal groups of three longitudinally arranged setae and two single subventral setae, excretory pore at the level of the anterior part of the stoma and renette gland 34–47% of the oesophageal length. To date, the new species is the only Parodontophora species found in freshwater habitats.
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    Morariopsis dumonti n.sp. (Crustacea: Copepoda: Harpacticoida) – a new species from an unsaturated karstic zone in Slovenia (2000)
    Springer
    Hydrobiologia 436 (2000), S. 73-80 
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    ISSN: 1573-5117
    Keywords: Harpacticoida ; ground water ; interstitial ; taxonomy ; Slovenia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genus Morariopsishas a disjunct distribution. It has been found in south-eastern Europe and in the Baikal region in Russia. In Europe two species are known, both from the Dinaric region. They have been found in three caves only, but always in puddles filled with percolating water. This indicates that they inhabit an unsaturated karstic environment. A third species, Morariopsis dumontin.sp has now been found, in the same type of habitat, on several dates, in a small cave in central Slovenia. Males were recorded for the first time in this genus. The new species is related to Morariospsis kieferiPetkovski, 1959 from Dalmatia. The main differences are in the ornamentation of the furca and of the abdominal segments. P5 and particularly endopodite of P4 in males suggest a close relation between Morariaand Morariopsis.
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    Parastenocaris andreji n. sp. (Crustacea; Copepoda) – the first record of the genus in Slovenia (SE Europe) (2000)
    Springer
    Hydrobiologia 437 (2000), S. 235-239 
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    ISSN: 1573-5117
    Keywords: Harpacticoida ; ground water ; interstitial ; taxonomy ; Slovenia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Parastenocaris andreji n. sp. was found in ground water in a northwestern part of Slovenia (southern part of Central Europe). Two adult females of the new species were filtered out of 20 000 l of water during examination of an aquifer for water supply. The bore well was 10 m deep. The aquifer is fed by rainwater and probably only occasionally from a nearby alpine river Sava. The new species differs markedly from other known species of the genus by shape and armature of furcal rami, very long and slim maxillae and some characters on endopodites P2–P5. The closest related species are probably Parastenocaris nolliKiefer, 1938 with subspecies P. nolli alpinaKiefer, 1960, P. gertrudae Kiefer, 1968 and P. austriacaKiefer, 1976.
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    Partial Assembly of the Yeast Mitochondrial ATP Synthase 1 (2000)
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    Journal of bioenergetics and biomembranes 32 (2000), S. 391-400 
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    ISSN: 1573-6881
    Keywords: ATP synthase ; F1-ATPase ; Saccharomyces cerevisiae ; petite mutants ; epistasis ; mitochondrion ; pet mutants
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Physics
    Notes: Abstract The mitochondrial ATP synthase is a molecular motor that drives the phosphorylation ofADP to ATP. The yeast mitochondrial ATP synthase is composed of at least 19 differentpeptides, which comprise the F1 catalytic domain, the F0 proton pore, and two stalks, oneof which is thought to act as a stator to link and hold F1 to F0, and the other as a rotor.Genetic studies using yeast Saccharomyces cerevisiae have suggested the hypothesis thatthe yeast mitochondrial ATP synthase can be assembled in the absence of 1, and even 2, ofthe polypeptides that are thought to comprise the rotor. However, the enzyme complexassembled in the absence of the rotor is thought to be uncoupled, allowing protons to freelyflow through F0 into the mitochondrial matrix. Left uncontrolled, this is a lethal process andthe cell must eliminate this leak if it is to survive. In yeast, the cell is thought to lose ordelete its mitochondrial DNA (the petite mutation) thereby eliminating the genes encodingessential components of F0. Recent biochemical studies in yeast, and prior studies in E. coli,have provided support for the assembly of a partial ATP synthase in which the ATP synthaseis no longer coupled to proton translocation.
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    Thermotolerant fungi erroneously reported in applied research work as possessing thermophilic attributes (2000)
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    World journal of microbiology and biotechnology 16 (2000), S. 869-880 
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    ISSN: 1573-0972
    Keywords: Biotechnology ; ecology ; fungi ; nomenclature ; synopsis ; taxonomy ; thermophilic ; thermotolerant
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract In applied research work dealing with heat-tolerant fungi, currently classified into two groups: namely thermotolerants and thermophiles, information on levels of thermotolerance is generally scant. Cited binomials are often referred to as representatives of thermophilic taxa. The present contribution attempts to specify proper heat-tolerance levels of species cited in biotechnological papers of academic and applied research types published in the last four decades. This assessment integrates relevant available information concerning well defined thermotolerant taxa. Distinction between both groups of heat-tolerant fungi is a mean to optimize investigations of temperature-dependent physiological processes. The nomenclatural status of the binomials retrieved was also re-appraised following the International Code of Botanical Nomenclature. Articles of the code govern the legal validity of fungal names. The goal is to deter `ghost names' that have no status of any kind. Their use in the literature is not only a source of confusion but also hinders the preparation of sound reviews and reference documents. The intention was also to detect names which do not fulfill all criteria for a valid legal publication. Their status could then be validated if the taxonomic position of the fungus justifies this procedure. The taxonomic status of these thermotolerants was also re-examined following present-day knowledge of their respective genera. Integration of warranted taxonomic decisions in the literature of applied research is crucial. These decisions consider the status of a fungus as a valid species (proposed synonymies) or the nature of its generic affinities (name change). Strict application of these decisions severly reduces levels of heterogeneity regarding names used for the same organism. It also clarifies its generic affinities with other thermotolerant fungi. The present note is not an exhaustive assessment on the nomenclatural and taxonomic positions of known thermotolerant fungi, an ecological group for which a global document remains to be produced. It only deals with those taxa most commonly cited in the literature examined. Over 130 fungi are here considered. The group manifests a diversity of taxonomic characters since it includes members of the following systematic groupings: Oomycetes, Zygomycetes, Ascomycetes, anamorphic fungi and Holobasidiomycetes. Few new taxonomic synonyms and invalid binomials are introduced in the present contribution. The former concern the following taxa: Gilmaniella thermophila, Mucor thermoaerospora, Sporotrichum lignicola and Zalerion thermophylii. Three binomials proved to have no taxonomic status of any sort: Acremonium cellulophilum, Nodulisporium microsporum and N. thermoroseum.
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    Young children's partitioning strategies (2000)
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    Educational studies in mathematics 43 (2000), S. 191-221 
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    ISSN: 1573-0816
    Keywords: analog objects ; children's informal knowledge ; conceptual mapping ; fair shares ; partitive quotient fraction construct ; partitioning tasks ; partitioning strategies ; quantification ; taxonomy ; teaching interventions
    Source: Springer Online Journal Archives 1860-2000
    Topics: Mathematics
    Notes: Abstract Taxonomies for classifying children's partitioning strategies have generally focused on the contexts in which the strategies occur and whether the strategies generate fair shares. Therefore, the overall aim of this study was to increase our knowledge about young children's partitioning strategies by setting out not only to identify new partitioning strategies but also to develop a taxonomy for classifying young children's partitioning strategies in terms of their ability to facilitate the abstraction of the partitive quotient fraction construct from the concrete activity of partitioning objects and/or sets of objects. Clinical interviews were conducted with twelve purposely-selected Year Three students. Each student was presented with a unique set of realistic partitioning tasks. The paper concludes with a taxonomy for: (i) qualitatively evaluating a child's progress towards the abstraction of the partitive quotient fraction construct, and (ii) planning and implementing teaching interventions commensurate with the child's level of progress towards the abstraction of the partitive quotient fraction construct. This taxonomy provides researchers and teachers with means of better utilising children's informal partitioning strategies as the foundation upon which to further develop their understandings of the partitive quotient fraction construct.
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    Pichia sporocuriosa sp. nov., a new yeast isolated from rambutan (2000)
    Springer
    Antonie van Leeuwenhoek 77 (2000), S. 37-42 
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    ISSN: 1572-9699
    Keywords: new yeast species ; Pichia sporocuriosa ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A strain of a hitherto undescribed yeast species with a unique ascospore morphology was isolated from rambutan (Nephelium lappaceum). A description of the new species, Pichia sporocuriosa, is given.
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    Electron microscopy of the K2 killer effect of Saccharomyces cerevisiae T206 on a mesophilic wine yeast (2000)
    Springer
    Antonie van Leeuwenhoek 78 (2000), S. 117-122 
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    ISSN: 1572-9699
    Keywords: electron microscopy ; killer effect ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A mesophilic wine yeast, Saccharomyces cerevisiae CSIR Y217 K − R − was subjected to the K2 killer effect of Saccharomyces cerevisiae T206 K + R + in a liquid grape medium. The lethal effect of the K2 mycoviral toxin was confirmed by methylene blue staining. Scanning electron microscopy of cells from challenge experiments revealed rippled cell surfaces, accompanied by cracks and pores, while those unaffected by the toxin, as in the control experiments, showed a smooth surface. Transmission electron microscopy revealed that the toxin damaged the cell wall structure and perturbed cytoplasmic membranes to a limited extent.
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    Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences (2000)
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    Antonie van Leeuwenhoek 78 (2000), S. 123-127 
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    ISSN: 1572-9699
    Keywords: Bacillus subtilis ; gyrA ; phylogeny ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Partial gyrA sequences were determined for twelve strains belonging to Bacillus amyloliquefaciens, B. atrophaeus, B. licheniformis, B. mojavensis,B. subtilis subsp. subtilis, B. subtilissubsp. spizizenii and B. vallismortis. The average nucleotide and translated amino acid similarities for the seven type strains were 83.7 and 95.1%, respectively, whereas the corresponding value for the 16S rRNA sequences was 99.1%. All of the type strains were sharply separated; the closest relationship was found between B. atrophaeus and B. mojavensis which shared a nucleotide similarity of 95.8%. Phylogenetic trees were inferred from gyrA nucleotide sequences using the neighbor-joining, Fitch–Margoliash and maximum parsimony algorithms. The test strains were divided into four groups, which generally reflected results previously reported in restriction digest and DNA-DNA hybridization studies. It is concluded from the comparative sequence analysis that the gyrA sequences provide a firm framework for the rapid and accurate classification and identification of Bacillus subtilis and related taxa.
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    Re-examination of some species of the genus Geotrichum Link: Fr (2000)
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    Antonie van Leeuwenhoek 77 (2000), S. 71-81 
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    ISSN: 1572-9699
    Keywords: DNA heterogeneity ; genome comparison ; Geotrichum ; taxonomy ; yeast
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The nutritional physiology and the growth rate of thirty-four strains representing species of Geotrichum without known teleomorph states were examined. From twenty-seven strains the mol% G+C were calculated from the DNA melting curves. The first derivatives of the melting curves of seven strains, including the type strain of Geotrichum clavatum, demonstrated the presence of two peaks, 12% away from each other; the remaining strains showed only a single broad peak. DNA homology values among strains of the former group were high, indicating their conspecificity. The strains of the latter group could be subdivided into six DNA homology groups, four of which could be identified with recognized species and two may represent novel taxa. A combined key of Geotrichum and its teleomorph states Galactomyces and Dipodascus is presented.
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    Species of the genus Psoroptes (Acari: Psoroptidae): A taxonomic consideration (2000)
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    Experimental and applied acarology 24 (2000), S. 213-225 
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    ISSN: 1572-9702
    Keywords: Psoroptes ; taxonomy ; species differentiation ; phenotype ; genotype
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The biosystematic status of mite species belonging to the genus Psoroptes Gervais, 1841 is difficult to determine by phenotypic methods and has been subject to taxonomic revisions and ongoing debate. At present, the existence of five species, P. cuniculi (Delafond, 1859), P. ovis (Hering, 1838), P. equi (Hering, 1838), P. cervinus Ward, 1915 and P. natalensis Hirst, 1919, is generally accepted. This classification is based mainly on the host species, the localization of the mites on their hosts and morphological characters of male mites. However, a critical review of the literature indicates that the features used to discriminate between the five species are not unequivocal: (a) the localization of mite populations on host animals is not completely strict, (b) the lengths of the outer opisthosomal setae of male mites, which are the main morphological features used for species discrimination, overlap between the five postulated species, and (c) host specificity cannot be deduced from results of transfer experiments. Rather, conspecificity of the members of the genus Psoroptes has to be presumed which is supported by molecular genetic analyses. On these grounds and on rules of priority P. cervinus Ward, 1915, P. cuniculi (Delafond, 1859), P. natalensis Hirst, 1919 and P. ovis (Hering, 1838) are seen as synonyms of P. equi (Hering, 1838).
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    Emendation of the basidiomycetous yeast genus Kondoa and the description of Kondoa aeria sp. nov (2000)
    Springer
    Antonie van Leeuwenhoek 77 (2000), S. 293-302 
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    ISSN: 1572-9699
    Keywords: Basidiomycetous yeasts ; Kondoa aeria sp. nov. ; ribosomal DNA sequencing ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genus Kondoa Y. Yamada, Nakagawa & Banno was erected to accommodate a single taxon, K. malvinella (Fell & Hunter) Y. Yamada, Nakagawa & Banno, which was transferred from the teliospore-forming genus Rhodosporidium Banno based on pronounced differences in the 5S and 26S ribosomal RNA (rRNA) nucleotide sequences to R. toruloides Banno. In contrast with the original description, reinvestigation of K. malvinella revealed the formation of transversely septate (auricularioid) basidia that did not arise on teliospores, but formed directly on the dikaryotic mycelium. The four-celled basidia developed sterigmata on which forcibly discharged asymmetric basidiospores (ballistospores) were produced. Additionally, a new taxon emerged from the study of recent isolates, for which the name K. aeria sp. nov. is proposed. This new species produced two-celled auricularioid basidia on hyphae with incomplete clamp connections. Ballistospores arose on the basidia at the tip of sterigmata and, after ejection, germinated by budding. These observations led us to present an emended diagnosis for the genus Kondoa. Analysis of the sequence data from the D1/D2 region of the 26S rRNA gene showed a very close resemblance between K. aeria and K. malvinella in a cluster that also contained several Bensingtonia species. Taxa in this cluster share specific physiological traits and produce characteristic pinkish-cream to mauve colonies; in contrast, formation of ballistoconidia is only observed in the Bensingtonia species. Sequence data supported placement of K. malvinella and K. aeria in the `Agaricostilbum clade' of the Urediniomycetes.
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    Pseudohyphal growth is induced in Saccharomyces cerevisiae by a combination of stress and cAMP signalling (2000)
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    Antonie van Leeuwenhoek 78 (2000), S. 187-194 
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    ISSN: 1572-9699
    Keywords: cAMP ; pseudohyphae ; Saccharomyces cerevisiae ; stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In Saccharomyces cerevisiae pseudohyphae formation may be triggered by nitrogen deprivation and is stimulated by cAMP. It was observed that even in a medium with an adequate nitrogen supply, cAMP can induce pseudohyphal growth when S. cerevisiae uses ethanol as carbon source. This led us to investigate the effects of the carbon source and of a variety of stresses on yeast morphology. Pseudohyphae formation and invasive growth were observed in a rich medium (YP) with poor carbon sources such as lactate or ethanol. External cAMP was required for the morphogenetic transition in one genetic background, but was dispensable in strain Σ1278b which has been shown to have an overactive Ras2/cAMP pathway. Pseudohyphal growth and invasiveness also took place in YPD plates when the yeast was subjected to different stresses: a mild heat-stress (37 °C), an osmotic stress (1 m NACl), or addition of compounds which affect the lipid bilayer organization of the cell membrane (aliphatic alcohols at 2%) or alter the glucan structure of the cell wall (Congo red). We conclude that pseudohyphal growth is a physiological response not only to starvation but also to a stressful environment; it appears to require the coordinate action of a MAP kinase cascade and a cAMP-dependent pathway.
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    An information retrieval system for VIR's herbarium, St. Petersburg, Russia, as a tool for cultivated plant research (2000)
    Springer
    Genetic resources and crop evolution 47 (2000), S. 147-152 
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    ISSN: 1573-5109
    Keywords: cultivated plants ; databases ; herbarium ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The herbarium collection of the N.I. Vavilov Institute of Plant Industry (WIR) contains specimens of cultivated plants, their wild relatives and weedy plants and provides ample opportunities for research. It is a unique special herbarium collection and one of those rare collections having a card index (catalog). For the catalog to be functional, it should reflect the current changes in the taxa names. Only a computerized card file may meet this requirement. The creation of a database for VIR's herbarium was launched in 1995. VIR is carrying out a range of work necessary for providing a wider access to its herbarium and related information for the international scientific community.
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    Population diversity of the Vicia sativa agg. (Fabaceae) in the flora of the former USSR deduced from RAPD and seed protein analyses (2000)
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    Genetic resources and crop evolution 47 (2000), S. 171-183 
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    ISSN: 1573-5109
    Keywords: evolution ; genetic resources ; RAPDs ; seed protein electrophoresis ; taxonomy ; Vicia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The genetic diversity of 58 wild and weedy populations representing taxa within the V. sativa aggregate from the former USSR, 4 cultivars of V. sativa, 2 accessions of V. cordata and 3 accessions of V. macrocarpa from Mediterranean countries were analysed using randomly amplified DNA fragments (RAPDs) and seed protein electrophoresis (SDS-PAGE). Interspecific variation between taxa in the V. sativa aggregate could readily be detected using both techniques. RAPDs and seed protein patterns were found to be an effective means of identifying accessions that cannot be identified clearly by morphological criteria alone. RAPD and seed protein analysis revealed a clear relationship between observed genetic variation of populations and their geographical distribution. Populations from each region had their own gene pools. Geographical variation was detected in V. segetalis. The degree of genetic divergence between local populations was usually related to proximity. In several locations where wild and weedy populations of different V. sativa agg. taxa grow sympatrically, intermediate forms could be detected at the DNA and protein levels. Both RAPD and seed protein analysis support the view that the V. sativa aggregate consists of 8 taxa warranting recognition at the species level. Several species in this aggregate are evolving intra-specific groups which can readily be detected at the molecular level.
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    Hexose transporters of tomato: molecular cloning, expression analysis and functional characterization (2000)
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    Plant molecular biology 44 (2000), S. 687-697 
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    ISSN: 1573-5028
    Keywords: gene expression ; heterologous expression ; H+/hexose symporter ; Lycopersicon esculentum ; quantitative PCR ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A full-length (LeHT2) and two partial (LeHT1 and LeHT3) cDNA clones, encoding hexose transporters, were isolated from tomato (Lycopersicon esculentum) fruit and flower cDNA libraries. Southern blot analysis confirmed the presence of a gene family of hexose transporters in tomato consisting of at least three members. The full-length cDNA (LeHT2) encodes a protein of 523 amino acids, with a calculated molecular mass of 57.6 kDa. The predicted protein has 12 putative membrane-spanning domains and belongs to the Major Facilitator Superfamily of membrane carriers. The three clones encode polypeptides that are homologous to other plant monosaccharide transporters and contain conserved amino acid motifs characteristic of this superfamily. Expression of the three genes in different organs of tomato was investigated by quantitative PCR. LeHT1 and LeHT3 are expressed predominantly in sink tissues, with both genes showing highest expression in young fruit and root tips. LeHT2 is expressed at relatively high levels in source leaves and certain sink tissues such as flowers. LeHT2 was functionally expressed in a hexose transport-deficient mutant (RE700A) of Saccharomyces cerevisiae. LeHT2-dependent transport of glucose in RE700A exhibited properties consistent with the operation of an energy-coupled transporter and probably a H+/hexose symporter. The K m of the symporter for glucose is 45 μM.
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    The contributions of Ulrich K. Einsle to the taxonomy of the copepoda (2000)
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    Hydrobiologia 417 (2000), S. 1-10 
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    ISSN: 1573-5117
    Keywords: taxonomy ; copepods ; Einsle ; chromatin diminution ; enzyme electrophoresis ; Cyclops
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
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    Three species of Tobrilidae (Nematoda: Enoplida) from Li River at Guiling, China (2000)
    Springer
    Hydrobiologia 421 (2000), S. 77-90 
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    ISSN: 1573-5117
    Keywords: Tobrilidae ; new record ; Nematoda ; taxonomy ; China
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Eutobrilus annetteae Joubert & Heyns, 1979 with its male reported for the first time, Semitobrilus pellucidus (Bastian, 1865) Tsalolichin, 1983, and Epitobrilus allophysis(Steiner, 1919) Tsalolichin, 1996 are described from the Li River at Guiling, China. The male of Eutobrilus annetteae is characterized by lots of crystalloids inside body, almost straight spicules about one anal body diameter long and seven equally sized supplements. Semitobrilus pellucidus from Guiling shows large variation in body width, position of amphids, form of buccal cavity, distance between denticles, direction of vagina, arrangement of oocytes, and shape of eggs. It is different from other populations in its shorter cephalic setae, less than 60% of head width, in its shorter tail and smaller c′ value. In males, there are 6–9 supplements, reduced and irregulary spaced. Epitobrilus allophysisis characterized by its labial setae longer than 50% of head width, small, posteriorly located ovoid amphid, single egg occupying whole space of uterus and blunt tail tip.
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    Subgeneric differentiation within Kurzia (Crustacea: Anomopoda: Chydoridae) and a new species from Central America (2000)
    Springer
    Hydrobiologia 421 (2000), S. 165-178 
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    ISSN: 1573-5117
    Keywords: Kurzia ; Crustacea ; Anomopoda ; Chydoridae ; taxonomy ; distribution ; Cladocera
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genus Kurzia is divided into two subgenera: Kurzia s. str. and Rostrokurzia n. subg. Subgenus Kurzia includes Kurzia (K.) latissima Kurz, 1874, with a palearctic -, Kurzia (K.) polyspina n. sp. with a neotropic - , and Kurzia (K.) cf. media (Birge, 1879) with a nearctic distribution. Rostrokurzia includes Kurzia (R.) longirostris Daday, 1898 (pantropical distribution), and Kurzia (R.) brevilabris Rajapaksa & Fernando, 1986, from subtropical and tropical Asia. Kurzia latissima Kurz, 1874, from Central Europe is redescribed in detail.
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    New and little known Nematodes (Monhysteroida, Nematoda) from the Strait of Magellan and the Beagle Channel (Chile) (2000)
    Springer
    Hydrobiologia 429 (2000), S. 9-23 
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    ISSN: 1573-5117
    Keywords: taxonomy ; marine nematodes ; Sabatieria ; Metacomesoma ; Paramonhystera ; Siphonolaimus ; the Strait of Magellan ; Chile
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Six species of Monhysteroida are described from the Strait of Magellan and the Beagle Channel, Chile. Three species of which, Sabatieria heipi n. sp., Paramonhystera geraerti n. sp. and Siphonolaimus smetti n. sp., are new to science. Sabatieria heipi n. sp. is characterised by a body length of 1529–1934 μm, cuticle punctuations with lateral differentiation; cephalic setae 5 μm long, amphids spiral with 4.0–4.2 turns, 10–11 μm in diameter; spicules 76 μm (2.1 anal body diameter), with a 6 μm projection in the ventral distal extremity, 11 minute precloacal supplements; tail 3.7–4.7 anal body diameter (abd) long with enlarged tip. Paramonhystera geraerti n. sp. is characterised by a body size of 705–767 μm; head diameter 12 μm, the cephalic setae 6 μm; amphids circular, 9–10 μm in diameter; spicules slender 108–116 μm (5.6 abd) long, 5 precloacal supplements; and tail 4.0–5.2 abd. Siphonolaimus smetti n. sp. is characterised by the long spear (40–45 μm), head diameter 11–12 μm, amphids circular, 12–13 μm in diameter or 50–57% of corresponding body diameter; the spicules 55 μm and 1.5 abd; tail conical, 2.8 abd (males) and 4.0 abd (females) long. Three other species, i.e. Metacomesoma cyatholaimoides Wieser, 1954, Paramonhystera biforma Wieser, 1956 and P. megacephala (Steiner, 1916) are redescribed. A key of all known species of Paramonhystera is proposed.
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    Two new species of Mesocyclops from southern China and notes on the genus Mesocyclops in China (2000)
    Springer
    Hydrobiologia 429 (2000), S. 115-131 
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    ISSN: 1573-5117
    Keywords: Mesocyclops mariae n.sp. ; Mesocyclops shenzhenensis n. sp. ; Guangxi ; Guangdong ; China ; taxonomy ; distribution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Two new Mesocyclops species, M. mariae n. sp. and M. shenzhenensisn. sp., are described from southern China, the former species from Guangxi province, the latter from Guangdong province. Both species have setules on the medial margin of the caudal rami. Compared with each other, there are some conspicuous differences, such as the spinule pattern of the antenna basipodite, the structure of receptaculum seminis, the armature of coxopodite and basipodite of P4 and the armature of the caudal rami. The paper also compares the two new species with their supposedly closest relatives, M. pseudospinosus Dussart & Fernando, 1988, M. leuckarti(Claus, 1857) and M. pehpeiensisHu, 1943. In addition, other species of Mesocyclops in China are discussed and a key to 10 Chinese species of Mesocyclops is provided.
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    A review on the occurrence and taxonomy of heterotrophic protists in extreme acidic environments of pH values ≤ 3 (2000)
    Springer
    Hydrobiologia 433 (2000), S. 153-156 
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    ISSN: 1573-5117
    Keywords: acid ; taxonomy ; protists ; ciliate ; flagellate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The occurrence and some important taxonomic problems of heterotrophic protists from extremely acidic (pH ≤3) environments are briefly discussed. Almost all information on the occurrence of heterotrophic protists from extremely acidic environments is restricted to acid mine drainage (AMD) or streams influenced by AMD. Most of the information is provided for ciliates. Very little information is available on the occurrence of flagellates, rhizopods and heliozoa in this environment. Within the ciliates Urotricha, Vorticella and Oxytricha dominate in acidic mining lakes. Actinophrys sp. is the most important heliozoan in these environments. There are many taxonomic problems which are not solved so far. Live observations and taxonomic methods adapted to the extreme chemical matrix are necessary for correct identification.
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    Taxonomic re-evaluation of Aphanizomenon flos-aquae NH-5 based on morphology and 16S rRNA gene sequences (2000)
    Springer
    Hydrobiologia 438 (2000), S. 99-105 
    Details
    ISSN: 1573-5117
    Keywords: Aphanizomenon ; Cyanobacteria ; 16S rRNA ; morphology ; sequences ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The taxonomy of Aphanizomenon flos-aquae strain NH-5, a producer of cyanotoxins, was re-evaluated by comparison with six other Aphanizomenon strains using morphological characteristics and 16S rRNA gene sequences. Strain NH-5 was concluded to be improperly identified as Aph. flos-aquae based upon (1) lack of bundle formation in the trichomes, (2) location of akinetes next to heterocytes, (3) lower similarities (less than 97.5%) in the 16S rRNA gene sequences relative to Aph. flos-aquae strains, and (4) comparison within a phylogenetic tree constructed from 16S rRNA gene sequences. The Aphanizomenon strains investigated in this study are classified to four morphological groups as described by the classical taxonomy of Komárek & Kovácik (1989). This classification was supported from the phylogenetic results of 16S rRNA gene sequences. This study also discusses the generic boundaries between Aphanizomenon and Anabaena.
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    Morphological variation of four planktic nostocalean cyanophytes – members of the genus Aphanizomenon or Anabaena? (2000)
    Springer
    Hydrobiologia 438 (2000), S. 107-116 
    Details
    ISSN: 1573-5117
    Keywords: Cyanophyta/Cyanobacteria ; Aphanizomenon ; Anabaena ; taxonomy ; morphology of trichomes ; heterocytes and akinetes ; Slovakia ; Austria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Morphological variation of trichomes, heterocytes and akinetes in four species classified into the nostocalean genera Aphanizomenon Morren ex Bornet et Flahault or Anabaena Bory (Cyanophyta/Cyanobacteria) was studied from natural samples by LM and illustrated by drawings and micrographs. All investigated species, Aphanizomenon gracile (Lemmerm.) Lemmerm., A. aphanizomenoides (Forti) Komárek et Horecká, Anabaena bergii Ostenfeld, A. minderi Huber-Pestalozzi, occur in the plankton as solitary trichomes, similar to many representatives of the genus Anabaena. Main generic diagnostic characters of Aphanizomenon and Anabaena are discussed.
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    Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains (2000)
    Springer
    Hydrobiologia 438 (2000), S. 117-138 
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    ISSN: 1573-5117
    Keywords: Anabaena ; cyanobacteria ; identification ; morphology ; planktic ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Fifty (50) strains of planktic species of Anabaena (cyanobacteria), including collections from Japan and China and from different culture collections, were induced to form akinetes at low temperature (15 °C). Their morphologies were then observed and described. Fourty seven strains successfully formed akinetes and these were classified into 20 species comprising seven with straight trichomes and 13 with coiled trichomes. Three strains, which did not form akinetes, were separated into two taxonomic groups, but could not be identified to any described species. In addition, a key to the planktic species of Anabaena described in the study is presented.
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    The taxonomic position of Cyanidium, Cyanidioschyzon and Galdieria: an update (2000)
    Springer
    Hydrobiologia 433 (2000), S. 137-143 
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    ISSN: 1573-5117
    Keywords: Cyanidium caldarium ; Cyanidioschyzon merolae ; Galdieria sulphuraria ; taxonomy ; acidophily
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The ecophysiological, cytomorphological, biochemical and molecular data presently available for the acidophilic red algal species Cyanidium caldarium, Cyanidioschyzon merolae and Galdieria sulphuraria are summarised. The taxonomic position of the three genera is discussed and emendements to the generic diagnosis are presented.
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    Molecular variation in Galdieria sulphuraria (Galdieri) Merola and its bearing on taxonomy (2000)
    Springer
    Hydrobiologia 433 (2000), S. 145-151 
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    ISSN: 1573-5117
    Keywords: Cyanidium caldarium ; Cyanidioschyzon merolae ; Galdieria sulphuraria ; rbcL ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cyanidium caldarium, Cyanidioschyzon merolae and Galdieria sulphuraria are three unicellular algae characteristic, of acid thermal environments. Recently, on the basis of morphological characters, three new species of Galdieria (G. partita, G. daedala, G. maxima ) isolated from acid-thermal springs in Russia have been instituted. A selected region of rbcL and the sequence of the intergenic spacer between the rbcL and rbcS have been amplified and sequenced from different Galdieria species and strains, in order to define molecular relationship among these interesting algae. The obtained cladogram shows that Cyanidium caldarium and Cyanidioschyzon merolae form a sister group which, in turn, is in a sister group relationship with Galdieria. This last genus is divided in two clades, one of which includes G. sulphuraria accessions from Naples (Italy), California, and Yellowstone and the other one includes G. sulphuraria accessions from Java (Indonesia) and from the Russian species. These results support the status of the genus Galdieria and suggest that G. daedala, G. maxima and G. partita are three very similar strains of G. sulphuraria; the rbcL variation within Galdieria accessions has a pattern which is broadly connected to the geographial distribution. The data obtained from the intergenic rbcL-rbcS spacer partly confirm those from the rbcL analysis.
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    Karualona n.gen. (Anomopoda: Chydoridae), with a description of two new species, and a key to all known species (2000)
    Springer
    Hydrobiologia 435 (2000), S. 61-82 
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    ISSN: 1573-5117
    Keywords: Chydoridae ; Anomopoda ; taxonomy ; Karualona ; trunk limbs
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The species group of Alona karua is raised to generic rank and named Karualona. The genus is defined on the basis of a number of characters of the body and its appendages. Tentative new microcharacters are introduced, related to the type and length of selected setae of P1, P2, P3 and P4. Two new species are described, one from the island of Socotra and one from Mexico. A key to the five currently recognized species is given.
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    Several new and known species from the families Coninckiidae and Comesomatidae (Nematoda) in the White Sea (2000)
    Springer
    Hydrobiologia 435 (2000), S. 43-59 
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    ISSN: 1573-5117
    Keywords: Nematoda ; Coninckiidae ; Comesomatidae ; White Sea ; taxonomy ; descriptions
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Ten new and known species of the genera Coninckia, Cervonema, Laimella and Sabatieria are described from the White Sea. Coninckia macroseta sp. n. resembles C. seta Wieser et Hopper, 1967 (Florida coast of U.S.A.) in shape of the amphid and other characters, but differs from the latter by greater body length (2399 μm versus 1300–1400 μm) and by the a-index (83 versus and a 57–58). Cervonema proximamphidum sp. n. differs from all other species of Cervonema by the shape of posterior widening of the pharynx (except for C. allometricum Wieser, 1954 whose original description is too brief). The pharynx of the new species forms posteriorly a conical widening with vague radial striation, whereas the pharynx of other Cervonema species presents posteriorly an oval or elongate thickening with wavy contour and distinct muscular transversal striation. The other diagnostic characters of Cervonema proximamphidum sp. n. are close position of the amphid to the anterior end (distance from the anterior end to the amphid 6–7.5 μm), longer outer labial and cephalic setae (5–5.5 μm), relatively longer and slender body (respectively, 1423–1563 μm and a=30.9–41.1). Specimens Cervonema minutus Muthumbi, Soetaert et Vincx, 1997 largely agree with the original description of Muthumbi et al. (1997) based on the nematodes sampled in the Indian Ocean deep sea; only cephalic setae length (2.7–3.5 versus 2 μm) differ. The White Sea specimens Laimella filipjevi coincide well with the description of Jensen (1979) made on nematodes from the western Baltic Sea, except slight difference in body length (1564–1837 μm versus 1086–1152 μm). Sabatieria kolaensis (Ssaweljev, 1912) is redescribed and restored as valid species. Sabatieria kolaensis was assigned by Platt (1985) to the list of dubious species because of very brief original description lacking some important details. Sabatieria kolaensis belongs to the S. praedatrix species group and is characterized by the greatest number of preanal supplements (31–40). Sabatieria lawsi Platt, 1983 was previously known from the only Antarctic Peninsula shelf; the single White Sea male specimen corresponds well to the original diagnosis of Platt (1983). Sabatieria lawsi is considered to be very close or near identical to S. praedatrix de Man, 1907. The species Sabatieria longispinosa Lorenzen, 1972, S. ornata (Ditlevsen, 1918), S. pulchra (G. Schneider, 1906) and S. strigosa Lorenzen, 1972 are also described and discussed.
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    Middle pleistocene humans from africa (2000)
    Springer
    Human evolution 15 (2000), S. 63-74 
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    ISSN: 1824-310X
    Keywords: comparative anatomy ; taxonomy ; species ; Homo erectus ; Homo heidelbergensis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Patterns of human evolution in the Middle Pleistocene remain poorly understood. There is general consensus that by the onset of this time period, populations ofHomo erectus were dispersed from Africa into Eurasia, including the Far East. In the western part of this range (perhaps in Africa),Homo erectus then produced a daughter lineage exhibiting more advanced characters of the face, braincase and cranial base. How this new species should be defined is currently debated. In my view, fossils from sites such as Bodo and Broken Hill in Africa may be lumped with material from earlier Middle Pleistocene localities in Europe. Such a taxon is appropriately namedHomo heidelbergensis. Whether the hypodigm should be extended to include fossils from China is another question. In any case, this group of hominids is plausibly ancestral to both the specialized Neanderthals of Europe and more modern humans of the later Middle Pleistocene.
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    Thermophilic fungi and applied research: a synopsis of name changes and synonymies (2000)
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    World journal of microbiology and biotechnology 16 (2000), S. 881-888 
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    ISSN: 1573-0972
    Keywords: Biotechnology ; ecology ; fungi ; nomenclature ; status ; synopsis ; taxonomy ; thermophile
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract The present synopsis reports on taxonomic decisions and name changes introduced in the last decades for a number of thermophilic fungi. Taxa dealt with are those most commonly cited in the literature of fundamental and applied work or concern species having complex taxonomic histories. The definition of a thermophile follows the classificatory scheme elaborated by Cooney & Emerson in 1964. The synopsis provides the latest legal valid names for several thermophiles. Binomials of accepted synonymies are also reported with arguments in favour of these taxonomic decisions. The material of this contribution is a synthetic simplified account of two previous reviews on the taxonomy of thermophilic fungi. The present document aims: (1) to suppress the use of ghost binomials having no status of any kind; (2) to favour the continuous use of the latest legal valid name of a taxon to avoid cases of redundancies by citing binomials of known synonyms. Homogeneity in cited names is a fundamental prerequisite for comparative studies. The synopsis is thus a sound tool for future critical reviews of ecological and of biotechnological interests. The status of over a hundred names are here reviewed. Two additional new synonyms are proposed; these concern Mucor miehei var. minor and Sporotrichum cellulophilum.
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    Substrate specificity of yeast invertase in transglycosylation reactions (2000)
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    Chemistry of natural compounds 36 (2000), S. 88-89 
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    ISSN: 1573-8388
    Keywords: Saccharomyces cerevisiae ; yeast invertase ; active enzyme
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The substrate specificity of purified yeast invertase isolated fromSaccharomyces cerevisiae in transglycosylation reactions was determined. The enzyme is specific for primary alcohols. The yeast activity is a function of the alkyl length and substrate hydrophobicity (n-butyl, isobutyl, isoamyl alcohols).
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    Adaptation of a Saccharomyces cerevisiae strain to high copper concentrations (1994)
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    BioMetals 7 (1994), S. 221-226 
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    ISSN: 1572-8773
    Keywords: catalase ; copper resistance ; pH-dependent growth ; Saccharomyces cerevisiae ; superoxide dismutase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract A strain of Saccharomyces cerevisiae has been adapted to increasing concentrations of copper at two different pH values. The growth curve at pH 5.5 is characterized by a time generation increasing with the amount of added copper. A significant decrease of cell volume as compared with the control is also observed. At pH 3 the cells grow faster than at pH 5.5 and resist higher copper concentrations (3.8 against 1.2 mm). Experimental evidence indicates that, after copper treatment, the metal is not bound to the cell wall, but is localized intracellularly. A significant precipitation of copper salts in the medium was observed only at pH 5.5. Increased levels of superoxide dismutase (SOD) activity were observed in copper-treated cells and which persisted after 20 subsequent inocula in a medium without added metal. On the contrary, catalase activity was not stimulated by copper treatment and, hence, not correlated with SOD levels. The mechanism of copper resistance, therefore, probably involves a persistent induction of SOD, but not of catalase, and it is strongly pH-dependent.
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    Chimeric evolution of the 2-μm genome in Saccharomyces cerevisiae (1994)
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    Journal of molecular evolution 38 (1994), S. 363-368 
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    ISSN: 1432-1432
    Keywords: Saccharomyces cerevisiae ; 2-μm circle ; DNA sequencing ; Horizontal transmission ; Site-specific recombination ; Selfish DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We compared the nucleotide substitution pattern over the entire genome of two unique variants of the 6,300-bp selfish DNA (2 μm) plasmid in Saccharomyces cerevisiae. The DNA sequence of the left-unique region is identical among 2-μm variants, while the right-unique region shows substantial divergence. This chimeric pattern cannot be explained by neutral or Darwinian selection models. We propose that horizontal transmission of the 2-μm plasmid coupled with a directed, polarized gene conversion maintains the DNA sequence of the left-unique region, whereas the right-unique region is subject to random drift and Darwinian selection.
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    Synonymy of the yeast generaWingea andDebaryomyces (1994)
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    Antonie van Leeuwenhoek 66 (1994), S. 337-342 
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    ISSN: 1572-9699
    Keywords: Debaryomyces ; phylogeny ; ribosomal RNA ; taxonomy ; Wingea ; yeasts
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Extent of divergence in partial nucleotide sequences from large and small subunit ribosomal RNAs was used to estimate the evolutionary relationship between the generaWingea andDebaryomyces. These data showed the monotypic genusWingea to be congeneric withDebaryomyces, and it is proposed to transferW. robertsii toDebaryomyces.
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    Mistranslation of human phosphoglycerate kinase in yeast in the presence of paromomycin (1994)
    Springer
    Current genetics 26 (1994), S. 95-99 
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    ISSN: 1432-0983
    Keywords: Translational fidelity ; Paromomycin ; Stuttering ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Missense errors in the translation of mRNAs in Saccharomyces cerevisiae were screened by looking for charge heterogeneity of proteins on two-dimensional gels resulting from the substitution of charged and neutral amino acids. No such mistranslation was detected in wild-type yeast strains grown in the presence of the translational error-inducing antibiotic paromomycin. However, paromomycin-induced mistranslation of a heterologous mRNA, encoding human phosphoglycerate kinase expressed in yeast, was seen. We suggest that the combination of error-prone translation of a heterologous mRNA, and growth in the presence of paromomycin, leads to an accumulation of mistranslated proteins that can be detected by two-dimensional gel electrophoresis.
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    Saccharomyces cerevisiae YDR1, which encodes a member of the ATP-binding cassette (ABC) superfamily, is required for multidrug resistance (1994)
    Springer
    Current genetics 26 (1994), S. 285-294 
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    ISSN: 1432-0983
    Keywords: ABC superfamily ; Multidrug resistance ; Saccharomyces cerevisiae ; YDR1 gene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A multidrug resistance gene, YDR1, of Saccharomyces cerevisiae, which encodes a 170-kDa protein of a member of the ABC superfamily, was identified. Disruption of YDR1 resulted in hypersensitivity to cycloheximide, cerulenin, compactin, staurosporine and fluphenazine, indicating that YDR1 is an important determinant of cross resistance to apparently-unrelated drugs. The Ydr1 protein bears the highest similarity to the S. cerevisiae Snq2 protein required for resistance to the mutagen 4-NQO. The drug-specificity analysis of YDR1 and SNQ2 by gene disruption, and its phenotypic suppression by the overexpressed genes, revealed overlapping, yet distinct, specificities. YDR1 was responsible for cycloheximide, cerulenin and compactin resistance, whereas, SNQ2 was responsible for 4-NQO resistance. The two genes had overlapping specificities toward staurosporine and fluphenazine. The transcription of YDR1 and SNQ2 was induced by various drugs, both relevant and irrelevant to the resistance caused by the gene, suggesting that drug specificity can be mainly attributed to the functional difference of the putative transporters. The transcription of these genes was also increased by heat shock. The yeast drug-resistance system provides a novel model for mammalian multidrug resistance.
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    Genetic effects of photoactivated psoralens during meiosis in DNA repair mutantpso3-1 ofSaccharomyces cerevisiae (1994)
    Springer
    Current genetics 25 (1994), S. 19-23 
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    ISSN: 1432-0983
    Keywords: Psoralen ; DNA repair mutants ; Gene conversion ; Recombination ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The influence of the DNA repair genePSO3 on photoactivated psoralen-induced meiotic recombination, gene conversion, reverse mutation, and on survival, was assayed in diploid strains ofSaccharomyces cerevisiae homozygous for the wild-type or thepso3-1 mutant allele. Sporulation was normal in thepso3-1 diploid. Wild-type and mutant strains had the same sensitivity to photoactivated monofunctional psoralen (3-CPs+UVA) in meiosis-uncommitted and meiosis-committed stages. The mutant showed higher sensitivity to photoactivated bifunctional psoralen (8-MOP+UVA) during all stages of the meiotic cycle. Mutation induction by 3-CPs+UVA or 8-MOP+UVA in meiosis-committed cells revealed no significant differences between wild-type and thepso3-1 mutant. The status of thePSO3 gene has no influence on the kinetics of induction of gene conversion and crossing-over after 3-CPs+UVA treatment in meiosis-committed cells: gene conversion was blocked while recombination was induced. After treatment with 8-MOP+UVA gene conversion was also blocked in both strains while crossing-over could only be observed in meiosis-committed wild-type cells.
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    New in-vivo cloning methods by homologous recombination in yeast (1994)
    Springer
    Current genetics 25 (1994), S. 180-183 
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    ISSN: 1432-0983
    Keywords: Saccharomyces cerevisiae ; In-vivo cloning ; Non-replicative vectors ; Homologous recombination
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have devised a new strategy to clone DNA sequences from an yeast autonomously-propagating plasmid into a non-autonomous integrative vector by in-vivo recombination. The method consists of a first step in which the replicative plasmid carrying the DNA fragment of interest forms a co-integrate with the non-replicative plasmid by an induced in-vivo reciprocal exchange accompanied by gene conversion. The dimeric plasmid obtained is then purified and cut with an appropriate restriction enzyme and ligated independently to obtain the two intact monomeric plasmids, the original autonomous plasmid plus the new non-autonomous plasmid carrying the subcloned DNA fragment. The dimeric co-integrate can also serve as substrate for a second in-vivo reciprocal exchange that produces new autonomous plasmids carrying the desired DNA fragment. The technique considerably expands the applications of in-vivo cloning in yeast by complementing three important characteristics of previously published methods: (1) it can be used to clone into non-propagating vectors; (2) co-transformation experiments are not required; and (3) the intermediate co-integrate can be used to generate new types of autonomously-propagating plasmids directly. These characteristics are independent of whether the DNA insert is flanked by appropriate restriction sites or whether it does, or does not, express a detectable phenotype in yeast. The method is particularly useful for the cloning of large DNA fragments and can be used for plasmids from organisms other than yeasts.
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    Expression of the Saccharomyces cerevisiae CYT2 gene, encoding cytochrome c1 heme lyase (1994)
    Springer
    Current genetics 25 (1994), S. 291-298 
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    ISSN: 1432-0983
    Keywords: Cytochrome c 1 ; Cytochrome c 1 heme lyase ; GRF2p ; Glucose repression ; HAPp ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In this paper we examine the expression of the Saccharomyces cerevisiae CYT2 gene, which encodes cytochrome c 1 heme lyase. This enzyme is required for covalent attachment of heme to apocytochrome c 1, a subunit of the mitochondrial respiratory chain. Transcription of the 1-kb CYT2 mRNA initiates at four prominent sites at a distance of 52–225 bp in front of the AUG start codon. The level of CYT2 mRNA is not influenced by the presence or absence of oxygen or of heme, but it is subject to carbonsource control. The concentration of the CYT2 mRNA is significantly reduced in glucose-grown cells as compared to cells grown under non-repressing conditions. Neither the HAPp activator proteins nor MIG1p, a repressor protein involved in glucose repression, seem to mediate this effect.
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    The Escherichia coli recA gene increases UV-induced mitotic gene conversion in Saccharomyces cerevisiae (1994)
    Springer
    Current genetics 25 (1994), S. 472-474 
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    ISSN: 1432-0983
    Keywords: Saccharomyces cerevisiae ; recA gene expression ; UV radiation ; Mitotic gene conversion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effect of the Escherichia coli RecA protein on mitotic recombination in the diploid D7 strain of Saccharomyces cerevisiae damaged by UV radiation was investigated. The D7 strain was transformed by two modified versions of the pNF2 plasmid: one, containing the ADH-1 promoter, and the other containing the recA gene tandemly arranged behind the ADH-1 promoter region. Immunological analysis proved the presence of the 38-kDa RecA protein in D7/pNF2ADHrecA transformants. We observed a positive effect of recA gene expression on mitotic gene conversion, mainly at higher doses of UV radiation. The results indicate that a RecA-like activity could participate in steps preceeding mitotic conversion events in yeast.
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    ERV1 is involved in the cell-division cycle and the maintenance of mitochondrial genomes in Saccharomyces cerevisiae (1994)
    Springer
    Current genetics 26 (1994), S. 15-20 
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    ISSN: 1432-0983
    Keywords: Cell-division cycle ; Mitochondrial genome ; Nuclear mutation ; Saccharomyces cerevisiae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In former studies it was found that the ERV1 gene is essential for cell viability and for the biogenesis of functional mitochondria. A temperature-sensitive nuclear mutant exhibits a severe reduction in all the mitochondrial transcripts. Elimination of the gene leads to growth arrest after a few cell divisions. The putative gene product bears the characteristics of a regulatory factor since it has low expression rate and a high content of charged amino acids. In this study it is further verified that the ERV1 gene alone is responsible for the observed cellular and mitochondrial defects. The 5′ region of the gene is analysed by DNA deletions and complementation studies. Expression of the gene under the control of the GAL1-10 promoter in a disruption strain of ERV1 allows a more detailed specification of its influence on mitochondrial and cellular functions. Immediate and complete loss of mitochondrial genomes is observed after the promoter has been shut off, whereas the yeast cells are still able to grow for a limited time under these conditions. Analysis of the cells by in-vivo DNA flurorescence demonstrates a specific arrest in the cell-division cycle as the terminal phenotype. To further characterize the temperature-sensitive allele of ERV1 the mutated gene has been isolated and sequenced. A single point mutation which leads to the exchange of a single amino acid is found in the reading frame.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00326299
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  • 96
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    The yeast nuclear gene MRP-L13 codes for a protein of the large subunit of the mitochondrial ribosome (1994)
    Springer
    Current genetics 26 (1994), S. 8-14 
    Details
    ISSN: 1432-0983
    Keywords: Saccharomyces cerevisiae ; Nuclear gene ; Mitochondria ; Mitochondrial ribosomal protein
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The nuclear gene MRP-L13 of Saccharomyces cerevisiae, which codes for the mitochondrial ribosomal protein YmL13, has been cloned and characterized. It is a single-copy gene residing on chromosome XI. Its nucleotide sequence was found to be identical to that of the previously reported ORF YK105. A comparison of the predicted protein sequence of the MRP-L13 gene product and the actual N-terminal amino-acid sequence of the isolated YmL13 protein indicated that the mature protein is preceded by a mitochondrial signal peptide of 86 amino-acid residues, which is the longest among all known mitochondrial ribosomal proteins of S. cerevisiae. No sequence similarity was found to any other ribosomal protein in the current databases. The transcription of MRP-L13 was found to be repressed in the presence of glucose. Its protein product is not strictly essential for mitochondrial functions, but disruption of the gene by insertion of LEU2 noticeably affected cellular growth on non-fermentable carbon sources.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00326298
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  • 97
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    Antisense RNA regulation of the ILV2 gene in yeast: a correction (1994)
    Springer
    Current genetics 25 (1994), S. 289-289 
    Details
    ISSN: 1432-0983
    Keywords: Saccharomyces cerevisiae ; Inducible antisense gene ; Acetolactate synthase ; Bradytrophic phenocopy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A previous report of the use of antisense RNA to regulate gene expression in yeast is incorrect.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00357175
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  • 98
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    Isolation and characterization of three mutants with increased sensitivity to photoactivated 3-carbethoxypsoralen in Saccharomyces cerevisiae (1994)
    Springer
    Current genetics 25 (1994), S. 407-411 
    Details
    ISSN: 1432-0983
    Keywords: Psoralen sensitivity ; Saccharomyces cerevisiae ; DNA repair ; Oxidative stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The complementation and genetical analysis of yeast mutants sensitive to photoactivated 3-carbethoxy-psoralen define three novel recessive mutant alleles pso-5-1, pso6-1, and pso7-1. Their cross-sensitivity to UV254nm, radiomimetic mutagens, and to chemicals enhancing oxidative stress suggest that these mutants are either impaired in metabolic steps protecting from oxidative stress or in mechanisms of the repair of oxygen-dependent DNA lesions. None of the three novel mutant alleles block the induction of reverse mutation by photoactivated mono- and bi-functional psoralens, nitrogen mustards, or UV254nm.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00351778
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  • 99
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    Suppression of a mitochondrial point mutation in a tRNA gene can cast light on the mechanisms of 3′ end-processing (1994)
    Springer
    Current genetics 25 (1994), S. 451-455 
    Details
    ISSN: 1432-0983
    Keywords: tRNA processing ; Saccharomyces cerevisiae ; Mitochondria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We used a genetic approach to study the nuclear factors involved in the biogenesis of mitochondrial tRNAs. A point mutation in the mitochondrial tRNAAsp gene of Saccharomyces cerevisiae had previously been shown to result in a temperature-sensitive respiratory-deficient phenotype as a result of the absence of 3′ end-processing of the tRNAAsp. Analysis of mitochondrial revertants has shown that all revertants sequenced have a G-A compensatory change at position 53, which restores the hydrogen-bond with the mutated nucleotide. We then searched for nuclear suppressors to identify the nuclear gene(s) involved in mitochondrial tRNA 3′ end-processing. One such suppressor mutation was further characterized: it restores tRNAAsp maturation and growth at 36°C on glycerol medium in heterozygous diploids, but leads to a defective growth phenotype in haploids.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00351785
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  • 100
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    Stabilization of methionine-rich protein in Saccharomyces cerevisiae: targeting of BZN protein into the peroxisome (1994)
    Springer
    Current genetics 26 (1994), S. 390-397 
    Details
    ISSN: 1432-0983
    Keywords: Overexpression ; Peroxisomes ; Saccharomyces cerevisiae ; Stabilization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have constructed a gene coding for the 12-kDa intermediate form of the 2s methionine-rich protein from Bertholletia excelsa seeds. This protein, expressed intracellularly in yeast, is characterised by a 20-min balf-life. By adding 11 amino acids corresponding to the peroxisome-targeting sequence (PTSc) of luciferase, we have significantly increased its half-life. This stabilization allowed accumulation of the BZN protein into the peroxisome as judged by cell fractionation. Accumulation of the 12-kDa protein results in a significant increase of the total methionine content in yeast cells (30%) indicating that such a microorganism could represent a practicable protected shuttl for an animal-feed additive.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/BF00309924
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