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  • Public Library of Science  (117,677)
  • MDPI Publishing  (52,519)
  • American Meteorological Society
  • Blackwell Publishing Ltd
  • 2015-2019  (181,207)
  • 1945-1949  (2,824)
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  • 101
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    Impact of poleward moisture transport from the North Pacific on the acceleration of sea ice loss in the Arctic since 2002 (2017)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 30 (2017): 6757-6769, doi:10.1175/JCLI-D-16-0461.1.
    Description: Arctic sea ice area (SIA) during late summer and early fall decreased substantially over the last four decades, and its decline accelerated beginning in the early 2000s. Statistical analyses of observations show that enhanced poleward moisture transport from the North Pacific to the Arctic Ocean contributed to the accelerated SIA decrease during the most recent period. As a consequence, specific humidity in the Arctic Pacific sector significantly increased along with an increase of downward longwave radiation beginning in 2002, which led to a significant acceleration in the decline of SIA in the Arctic Pacific sector. The resulting sea ice loss led to increased evaporation in the Arctic Ocean, resulting in a further increase of the specific humidity in mid-to-late fall, thus acting as a positive feedback to the sea ice loss. The overall set of processes is also found in a long control simulation of a coupled climate model.
    Description: This work was supported by the National Research Foundation of Korea Grant NRF-2009-C1AAA001-0093, funded by the Korean government (MEST), to HJL, YHK, and MOK. S-WY is supported by the Korea Meteorological Administration Research and Development Program under Grant KMIPA2015-1042. Y-OK is supported by the U.S. Department of Energy (DE-SC0014433) and National Science Foundation (OCE-1242989). WP acknowledges support from the BMBF project CLIMPRE InterDec (FKZ: 01LP1609B).
    Description: 2018-01-26
    Keywords: Pacific decadal oscillation ; Sea surface temperature ; Humidity ; Ice loss/growth
    Repository Name: Woods Hole Open Access Server
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  • 102
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    Comparison of rip current hazard likelihood forecasts with observed rip current speeds (2017)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Weather and Forecasting 32 (2017): 1659-1666, doi:10.1175/WAF-D-17-0076.1.
    Description: Although rip currents are a major hazard for beachgoers, the relationship between the danger to swimmers and the physical properties of rip current circulation is not well understood. Here, the relationship between statistical model estimates of hazardous rip current likelihood and in situ velocity observations is assessed. The statistical model is part of a forecasting system that is being made operational by the National Weather Service to predict rip current hazard likelihood as a function of wave conditions and water level. The temporal variability of rip current speeds (offshore-directed currents) observed on an energetic sandy beach is correlated with the hindcasted hazard likelihood for a wide range of conditions. High likelihoods and rip current speeds occurred for low water levels, nearly shore-normal wave angles, and moderate or larger wave heights. The relationship between modeled hazard likelihood and the frequency with which rip current speeds exceeded a threshold was assessed for a range of threshold speeds. The frequency of occurrence of high (threshold exceeding) rip current speeds is consistent with the modeled probability of hazard, with a maximum Brier skill score of 0.65 for a threshold speed of 0.23 m s−1, and skill scores greater than 0.60 for threshold speeds between 0.15 and 0.30 m s−1. The results suggest that rip current speed may be an effective proxy for hazard level and that speeds greater than ~0.2 m s−1 may be hazardous to swimmers.
    Description: Funding was provided by the National Science Foundation (1232910, 1332705, and 1536365), and by National Security Science and Engineering and Vannevar Bush Faculty Fellowships funded by the assistant secretary of Defense for Research and Engineering.
    Description: 2018-02-28
    Keywords: Coastlines ; Coastal flows ; Waves, oceanic ; Forecast verification/skill ; Probability forecasts/models/distribution ; Statistical forecasting
    Repository Name: Woods Hole Open Access Server
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  • 103
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    Hydrography of the Gulf of Mexico using autonomous floats (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 773-794, doi:10.1175/JPO-D-17-0205.1.
    Description: Fourteen autonomous profiling floats, equipped with CTDs, were deployed in the deep eastern and western basins of the Gulf of Mexico over a four-year interval (July 2011–August 2015), producing a total of 706 casts. This is the first time since the early 1970s that there has been a comprehensive survey of water masses in the deep basins of the Gulf, with better vertical resolution than available from older ship-based surveys. Seven floats had 14-day cycles with parking depths of 1500 m, and the other half from the U.S. Argo program had varying cycle times. Maps of characteristic water masses, including Subtropical Underwater, Antarctic Intermediate Water (AAIW), and North Atlantic Deep Water, showed gradients from east to west, consistent with their sources being within the Loop Current (LC) and the Yucatan Channel waters. Altimeter SSH was used to characterize profiles being in LC or LC eddy water or in cold eddies. The two-layer nature of the deep Gulf shows isotherms being deeper in the warm anticyclonic LC and LC eddies and shallower in the cold cyclones. Mixed layer depths have an average seasonal signal that shows maximum depths (~60 m) in January and a minimum in June–July (~20 m). Basin-mean steric heights from 0–50-m dynamic heights and altimeter SSH show a seasonal range of ~12 cm, with significant interannual variability. The translation of LC eddies across the western basin produces a region of low homogeneous potential vorticity centered over the deepest part of the western basin.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M08PC20043 to Leidos, Inc., Raleigh, North Carolina.
    Description: 2018-10-04
    Keywords: Eddies ; Mixing ; Potential vorticity ; Surface layer ; Water masses
    Repository Name: Woods Hole Open Access Server
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  • 104
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    Wind-wave effects on estuarine turbulence : a comparison of observations and second-moment closure predictions (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 905-923, doi:10.1175/JPO-D-17-0133.1.
    Description: Observations of turbulent kinetic energy, dissipation, and turbulent stress were collected in the middle reaches of Chesapeake Bay and were used to assess second-moment closure predictions of turbulence generated beneath breaking waves. Dissipation scaling indicates that the turbulent flow structure observed during a 10-day wind event was dominated by a three-layer response that consisted of 1) a wave transport layer, 2) a surface log layer, and 3) a tidal, bottom boundary layer limited by stable stratification. Below the wave transport layer, turbulent mixing was limited by stable stratification. Within the wave transport layer, where dissipation was balanced by a divergence in the vertical turbulent kinetic energy flux, the eddy viscosity was significantly underestimated by second-moment turbulence closure models, suggesting that breaking waves homogenized the mixed surface layer to a greater extent than the simple model of TKE diffusing away from a source at the surface. While the turbulent transport of TKE occurred largely downgradient, the intermittent downward sweeps of momentum generated by breaking waves occurred largely independent of the mean shear. The underprediction of stress in the wave transport layer by second-moment closures was likely due to the inability of the eddy viscosity model to capture the nonlocal turbulent transport of the momentum flux beneath breaking waves. Finally, the authors hypothesize that large-scale coherent turbulent eddies played a significant role in transporting momentum generated near the surface to depth.
    Description: This work was supported by National Science Foundation Grants OCE-1061609 and OCE-1339032.
    Description: 2018-10-19
    Keywords: Mixing ; Turbulence ; Waves, oceanic ; Boundary layer
    Repository Name: Woods Hole Open Access Server
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  • 105
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    An observing system simulation experiment for the calibration and validation of the surface water ocean topography sea surface height measurement using in situ platforms (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 35 (2018): 281-297, doi:10.1175/JTECH-D-17-0076.1.
    Description: The wavenumber spectrum of sea surface height (SSH) is an important indicator of the dynamics of the ocean interior. While the SSH wavenumber spectrum has been well studied at mesoscale wavelengths and longer, using both in situ oceanographic measurements and satellite altimetry, it remains largely unknown for wavelengths less than ~70 km. The Surface Water Ocean Topography (SWOT) satellite mission aims to resolve the SSH wavenumber spectrum at 15–150-km wavelengths, which is specified as one of the mission requirements. The mission calibration and validation (CalVal) requires the ground truth of a synoptic SSH field to resolve the targeted wavelengths, but no existing observational network is able to fulfill the task. A high-resolution global ocean simulation is used to conduct an observing system simulation experiment (OSSE) to identify the suitable oceanographic in situ measurements for SWOT SSH CalVal. After fixing 20 measuring locations (the minimum number for resolving 15–150-km wavelengths) along the SWOT swath, four instrument platforms were tested: pressure-sensor-equipped inverted echo sounders (PIES), underway conductivity–temperature–depth (UCTD) sensors, instrumented moorings, and underwater gliders. In the context of the OSSE, PIES was found to be an unsuitable tool for the target region and for SSH scales 15–70 km; the slowness of a single UCTD leads to significant aliasing by high-frequency motions at short wavelengths below ~30 km; an array of station-keeping gliders may meet the requirement; and an array of moorings is the most effective system among the four tested instruments for meeting the mission’s requirement. The results shown here warrant a prelaunch field campaign to further test the performance of station-keeping gliders.
    Description: The authors would like to acknowledge the funding sources: the SWOT mission (JW, LF, DM); NASA Projects NNX13AE32G, NNX16AH76G, and NNX17AH54G (TF); and NNX16AH66G and NNX17AH33G (BQ). AF and MF were funded by the Keck Institute for Space Studies (which is generously supported by the W. M. Keck Foundation) through the project Science-driven Autonomous and Heterogeneous Robotic Networks: A Vision for Future Ocean Observations (http://kiss.caltech.edu/?techdev/seafloor/seafloor.html).
    Description: 2018-08-07
    Keywords: Altimetry ; In situ oceanic observations ; Profilers, oceanic ; Satellite observations ; Sensitivity studies ; Planning
    Repository Name: Woods Hole Open Access Server
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  • 106
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    Shelf–open ocean exchange forced by wind jets (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 163-174, doi:10.1175/JPO-D-17-0161.1.
    Description: The general problem of exchange from a shallow shelf across sharp topography to the deep ocean forced by narrow, cross-shelf wind jets is studied using quasigeostrophic theory and an idealized primitive equation numerical model. Interest is motivated by katabatic winds that emanate from narrow fjords in southeast Greenland, although similar topographically constrained wind jets are found throughout the world’s oceans. Because there is no net vorticity input by the wind, the circulation is largely confined to the region near the forcing. Circulation over the shelf is limited by bottom friction for weakly stratified flows, but stratification allows for much stronger upper-layer flows that are regulated by weak coupling to the lower layer. Over the sloping topography, the topographic beta effect limits the deep flow, while, for sufficient stratification, the upper-layer flow can cross the topography to connect the shelf to the open ocean. This can be an effective transport mechanism even for short, strong wind events because damping of the upper-layer flow is weak. A variety of transients are generated for an abrupt onset of winds, including short topography Rossby waves, long topographic Rossby waves, and inertial waves. Using parameters representative of southeast Greenland, katabatic wind events will force an offshore transport of O(0.4) Sv (1 Sv ≡ 106 m3 s−1) that, when considered for 2 days, will result in an offshore flux of O(5 × 1010) m3.
    Description: MAS was supported by the National Science Foundation under Grant OCE-1533170.
    Description: 2018-07-18
    Keywords: Coastal flows ; Downslope winds ; Ocean dynamics
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  • 107
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    On estimating the surface wind stress over the sea (2018)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1533-1541, doi:10.1175/JPO-D-17-0267.1.
    Description: Our study analyzes measurements primarily from two Floating Instrument Platform (FLIP) field programs and from the Air–Sea Interaction Tower (ASIT) site to examine the relationship between the wind and sea surface stress for contrasting conditions. The direct relationship of the surface momentum flux to U2 is found to be better posed than the relationship between and U, where U is the wind speed and is the friction velocity. Our datasets indicate that the stress magnitude often decreases significantly with height near the surface due to thin marine boundary layers and/or enhanced stress divergence close to the sea surface. Our study attempts to correct the surface stress estimated from traditional observational levels by using multiple observational levels near the surface and extrapolating to the surface. The effect of stability on the surface stress appears to be generally smaller than errors due to the stress divergence. Definite conclusions require more extensive measurements close to the sea surface.
    Description: This work was supported by the U.S. Office of Naval Research through Award N00014-16-1-2600. We
    Description: 2019-01-10
    Keywords: Atmosphere-ocean interaction ; Marine boundary layer
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  • 108
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    Observed variations in turbulent mixing efficiency in the deep ocean (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1815-1830, doi:10.1175/JPO-D-17-0275.1.
    Description: Recent progress in direct numerical simulations (DNSs) of stratified turbulent flows has led to increasing attention to the validity of the constancy of the dissipation flux coefficient Γ in the Osborn’s eddy diffusivity model. Motivated by lack of observational estimates of Γ, particularly under weakly stratified deep-ocean conditions, this study estimates Γ using deep microstructure profiles collected in various regions of the North Pacific and Southern Oceans. It is shown that Γ is not constant but varies significantly with the Ozmidov/Thorpe scale ratio ROT in a fashion similar to that obtained by previous DNS studies. Efficient mixing events with Γ ~ O(1) and ROT ~ O(0.1) tend to be frequently observed in the deep ocean (i.e., weak stratification), while moderate mixing events with Γ ~ O(0.1) and ROT ~ O(1) tend to be observed in the upper ocean (i.e., strong stratification). The observed negative relationship between Γ and ROT is consistent with a simple scaling that can be derived from classical turbulence theories. In contrast, the observed results exhibit no definite relationships between Γ and the buoyancy Reynolds number Reb, although Reb has long been thought to be another key parameter that controls Γ.
    Description: This study was supported by MEXT KAKENHI Grant JP15H05824 and JSPS KAKENHI Grant JP15H02131.
    Description: 2019-02-15
    Keywords: Abyssal circulation ; Mixing ; Subgrid-scale processes ; Turbulence ; In situ oceanic observations
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  • 109
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    Distinct mechanisms of decadal subsurface heat content variations in the eastern and western Indian Ocean modulated by tropical Pacific SST (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 31 (2018): 7751-7769, doi:10.1175/JCLI-D-18-0184.1.
    Description: Decadal variability of the subsurface ocean heat content (OHC) in the Indian Ocean is investigated using a coupled climate model experiment, in which observed eastern tropical Pacific sea surface temperature (EPSST) anomalies are specified. This study intends to understand the contributions of external forcing relative to those of internal variability associated with EPSST, as well as the mechanisms by which the Pacific impacts Indian Ocean OHC. Internally generated variations associated with EPSST dominate decadal variations in the subsurface Indian Ocean. Consistent with ocean reanalyses, the coupled model reproduces a pronounced east–west dipole structure in the southern tropical Indian Ocean and discontinuities in westward-propagating signals in the central Indian Ocean around 100°E. This implies distinct mechanisms by which the Pacific impacts the eastern and western Indian Ocean on decadal time scales. Decadal variations of OHC in the eastern Indian Ocean are attributed to 1) western Pacific surface wind anomalies, which trigger oceanic Rossby waves propagating westward through the Indonesian Seas and influence Indonesian Throughflow transport, and 2) zonal wind anomalies over the central tropical Indian Ocean, which trigger eastward-propagating Kelvin waves. Decadal variations of OHC in the western Indian Ocean are linked to conditions in the Pacific via changes in the atmospheric Walker cell, which trigger anomalous wind stress curl and Ekman pumping in the central tropical Indian Ocean. Westward-propagating oceanic Rossby waves extend the influence of this anomalous Ekman pumping to the western Indian Ocean.
    Description: This research was supported by the Independent Research and Development Program at WHOI to CCU, an NSF OCE PO grant (NSF OCE- 1242989) to Young-Oh Kwon, NOAA CP CVP grants (NA15OAR4310176 and NA17OAR4310255) to Hyodae Seo, and a research grant fromtheMinistry of Science and Technology of the People’s Republic of China to Tsinghua University (2017YFA0603902).
    Description: 2019-02-13
    Keywords: Air-sea interaction
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  • 110
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    Dynamics of three-dimensional turbulent wall plumes and implications for estimates of submarine glacier melting (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018):1941-1950, doi:10.1175/JPO-D-17-0194.1.
    Description: Subglacial discharges have been observed to generate buoyant plumes along the ice face of Greenland tidewater glaciers. These plumes have been traditionally modeled using classical plume theory, and their characteristic parameters (e.g., velocity) are employed in the widely used three-equation melt parameterization. However, the applicability of plume theory for three-dimensional turbulent wall plumes is questionable because of the complex near-wall plume dynamics. In this study, corrections to the classical plume theory are introduced to account for the presence of a wall. In particular, the drag and entrainment coefficients are quantified for a three-dimensional turbulent wall plume using data from direct numerical simulations. The drag coefficient is found to be an order of magnitude larger than that for a boundary layer flow over a flat plate at a similar Reynolds number. This result suggests a significant increase in the melting estimates by the current parameterization. However, the volume flux in a wall plume is found to be one-half that of a conical plume that has 2 times the buoyancy flux. This finding suggests that the total entrainment (per unit area) of ambient water is the same and that the plume scalar characteristics (i.e., temperature and salinity) can be predicted reasonably well using classical plume theory.
    Description: This work was supported by the Linné FLOW Centre at KTH and the Academy of Finland Center of Excellence Programme Grant 307331 (author Ezhova) and by VR Swedish Research Council GrantVR2014-5001 (author Brandt). Support to author Cenedese was given by NSF Project OCE-1434041.
    Description: 2019-02-27
    Keywords: Buoyancy ; Entrainment ; Turbulence
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  • 111
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    Some dynamical constraints on upstream pathways of the Denmark Strait Overflow (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 3033–3053, doi:10.1175/JPO-D-13-0227.1.
    Description: The East Greenland Current (EGC) had long been considered the main pathway for the Denmark Strait overflow (DSO). Recent observations, however, indicate that the north Icelandic jet (NIJ), which flows westward along the north coast of Iceland, is a major separate pathway for the DSO. In this study a two-layer numerical model and complementary integral constraints are used to examine various pathways that lead to the DSO and to explore plausible mechanisms for the NIJ’s existence. In these simulations, a westward and NIJ-like current emerges as a robust feature and a main pathway for the Denmark Strait overflow. Its existence can be explained through circulation integrals around advantageous contours. One such constraint spells out the consequences of overflow water as a source of low potential vorticity. A stronger constraint can be added when the outflow occurs through two outlets: it takes the form of a circulation integral around the Iceland–Faroe Ridge. In either case, the direction of overall circulation about the contour can be deduced from the required frictional torques. Some effects of wind stress forcing are also examined. The overall positive curl of the wind forces cyclonic gyres in both layers, enhancing the East Greenland Current. The wind stress forcing weakens but does not eliminate the NIJ. It also modifies the sign of the deep circulation in various subbasins and alters the path by which overflow water is brought to the Faroe Bank Channel, all in ways that bring the idealized model more in line with observations. The sequence of numerical experiments separates the effects of wind and buoyancy forcing and shows how each is important.
    Description: This study has been supported by National Science Foundation (OCE0927017 and ARC1107412).
    Description: 2015-06-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Channel flows ; Meridional overturning circulation ; Ocean circulation ; Topographic effects
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  • 112
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    African baobabs with false inner cavities : the radiocarbon investigation of the Lebombo Eco Trail Baobab (2015)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 10 (2015): e0117193, doi:10.1371/journal.pone.0117193.
    Description: The article reports the radiocarbon investigation results of the Lebombo Eco Trail tree, a representative African baobab from Mozambique. Several wood samples collected from the large inner cavity and from the outer part of the tree were investigated by AMS radiocarbon dating. According to dating results, the age values of all samples increase from the sampling point with the distance into the wood. For samples collected from the cavity walls, the increase of age values with the distance into the wood (up to a point of maximum age) represents a major anomaly. The only realistic explanation for this anomaly is that such inner cavities are, in fact, natural empty spaces between several fused stems disposed in a ring-shaped structure. We named them false cavities. Several important differences between normal cavities and false cavities are presented. Eventually, we dated other African baobabs with false inner cavities. We found that this new architecture enables baobabs to reach large sizes and old ages. The radiocarbon date of the oldest sample was 1425 ± 24 BP, which corresponds to a calibrated age of 1355 ± 15 yr. The dating results also show that the Lebombo baobab consists of five fused stems, with ages between 900 and 1400 years; these five stems build the complete ring. The ring and the false cavity closed 800–900 years ago. The results also indicate that the stems stopped growing toward the false cavity over the past 500 years.
    Description: The research was fully funded by the Romanian Ministry of National Education CNCS-UEFISCDI under grant PN-II-ID-PCE-2013-76.
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  • 113
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    Effects of eddy vorticity forcing on the mean state of the Kuroshio Extension (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1356–1375, doi:10.1175/JPO-D-13-0259.1.
    Description: Eddy–mean flow interactions along the Kuroshio Extension (KE) jet are investigated using a vorticity budget of a high-resolution ocean model simulation, averaged over a 13-yr period. The simulation explicitly resolves mesoscale eddies in the KE and is forced with air–sea fluxes representing the years 1995–2007. A mean-eddy decomposition in a jet-following coordinate system removes the variability of the jet path from the eddy components of velocity; thus, eddy kinetic energy in the jet reference frame is substantially lower than in geographic coordinates and exhibits a cross-jet asymmetry that is consistent with the baroclinic instability criterion of the long-term mean field. The vorticity budget is computed in both geographic (i.e., Eulerian) and jet reference frames; the jet frame budget reveals several patterns of eddy forcing that are largely attributed to varicose modes of variability. Eddies tend to diffuse the relative vorticity minima/maxima that flank the jet, removing momentum from the fast-moving jet core and reinforcing the quasi-permanent meridional meanders in the mean jet. A pattern associated with the vertical stretching of relative vorticity in eddies indicates a deceleration (acceleration) of the jet coincident with northward (southward) quasi-permanent meanders. Eddy relative vorticity advection outside of the eastward jet core is balanced mostly by vertical stretching of the mean flow, which through baroclinic adjustment helps to drive the flanking recirculation gyres. The jet frame vorticity budget presents a well-defined picture of eddy activity, illustrating along-jet variations in eddy–mean flow interaction that may have implications for the jet’s dynamics and cross-frontal tracer fluxes.
    Description: A. S. Delman (ASD) and J. L. McClean (JLM) were supported by NSF Grant OCE-0850463 and Office of Science (BER), U.S. Department of Energy, Grant DE-FG02-05ER64119. ASD and J. Sprintall were also supported by a NASA Earth and Space Science Fellowship (NESSF), Grant NNX13AM93H. JLM was also supported by U.S. DOE Office of Science grant entitled “Ultra-High Resolution Global Climate Simulation” via a Los Alamos National Laboratory subcontract. S. R. Jayne was supported by NSF Grant OCE-0849808. Computational resources for the model run were provided by NSF Resource Grants TG-OCE110013 and TG-OCE130010.
    Description: 2015-11-01
    Keywords: Geographic location/entity ; North Pacific Ocean ; Circulation/ Dynamics ; Forcing ; Instability ; Mesoscale processes ; Atm/Ocean Structure/ Phenomena ; Jets ; Models and modeling ; General circulation models
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  • 114
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    An integrated assessment model for helping the United States sea scallop (Placopecten magellanicus) fishery plan ahead for ocean acidification and warming (2015)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This is an open access article, free of all copyright. The definitive version was published in PLoS One 10 (2015): e0124145, doi:10.1371/journal.pone.0124145.
    Description: Ocean acidification, the progressive change in ocean chemistry caused by uptake of atmospheric CO2, is likely to affect some marine resources negatively, including shellfish. The Atlantic sea scallop (Placopecten magellanicus) supports one of the most economically important single-species commercial fisheries in the United States. Careful management appears to be the most powerful short-term factor affecting scallop populations, but in the coming decades scallops will be increasingly influenced by global environmental changes such as ocean warming and ocean acidification. In this paper, we describe an integrated assessment model (IAM) that numerically simulates oceanographic, population dynamic, and socioeconomic relationships for the U.S. commercial sea scallop fishery. Our primary goal is to enrich resource management deliberations by offering both short- and long-term insight into the system and generating detailed policy-relevant information about the relative effects of ocean acidification, temperature rise, fishing pressure, and socioeconomic factors on the fishery using a simplified model system. Starting with relationships and data used now for sea scallop fishery management, the model adds socioeconomic decision making based on static economic theory and includes ocean biogeochemical change resulting from CO2 emissions. The model skillfully reproduces scallop population dynamics, market dynamics, and seawater carbonate chemistry since 2000. It indicates sea scallop harvests could decline substantially by 2050 under RCP 8.5 CO2 emissions and current harvest rules, assuming that ocean acidification affects P. magellanicus by decreasing recruitment and slowing growth, and that ocean warming increases growth. Future work will explore different economic and management scenarios and test how potential impacts of ocean acidification on other scallop biological parameters may influence the social-ecological system. Future empirical work on the effect of ocean acidification on sea scallops is also needed.
    Description: Cooley, Rheuban, and Doney were supported by NOAA Grant NA12NOS4780145 (www.noaa.gov) and the Center for Climate and Energy Decision Making (CEDM, NSF SES-0949710) (www.nsf.gov). Luu was supported by a WHOI Summer Student Fellowship (www.whoi.edu).
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    Icebergs and sea ice detected with inverted echo sounders (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 1042–1057, doi:10.1175/JTECH-D-14-00161.1.
    Description: A 1-yr experiment using a pressure-sensor-equipped inverted echo sounder (PIES) was conducted in Sermilik Fjord in southeastern Greenland (66°N, 38°E) from August 2011 to September 2012. Based on these high-latitude data, the interpretation of PIESs’ acoustic travel-time records from regions that are periodically ice covered were refined. In addition, new methods using PIESs for detecting icebergs and sea ice and for estimating iceberg drafts and drift speeds were developed and tested. During winter months, the PIES in Sermilik Fjord logged about 300 iceberg detections and recorded a 2-week period in early March of land-fast ice cover over the instrument site, consistent with satellite synthetic aperture radar (SAR) imagery. The deepest icebergs in the fjord were found to have keel depths greater than approximately 350 m. Average and maximum iceberg speeds were approximately 0.2 and 0.5 m s−1, respectively. The maximum tidal range at the site was ±1.8 m and during neap tides the range was ±0.3 m, as shown by the PIES’s pressure record.
    Description: This work was supported by the National Science Foundation through the Divisions of Ocean Science and Polar Programs under Grant PLR-1332911. A. Silvano was supported as a WHOI guest student through a Gori Fellowship.
    Keywords: Glaciers ; Sea ice ; Ice thickness ; Data processing ; In situ oceanic observations ; Instrumentation/sensors
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    Destructive changes in the neuronal structure of the FVB/N mouse retina (2015)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 10 (2015): e0129719, doi: 10.1371/journal.pone.0129719.
    Description: We applied a series of selective antibodies for labeling the various cell types in the mammalian retina. These were used to identify the progressive loss of neurons in the FVB/N mouse, a model of early onset retinal degeneration produced by a mutation in the pde6b gene. The immunocytochemical studies, together with electroretinogram (ERG) recordings, enabled us to examine the time course of the degenerative changes that extended from the photoreceptors to the ganglion cells at the proximal end of the retina. Our study indicates that photoreceptors in FVB/N undergo a rapid degeneration within three postnatal weeks, and that there is a concomitant loss of retinal neurons in the inner nuclear layer. Although the loss of rods was detected at an earlier age during which time M- and S-opsin molecules were translocated to the cone nuclei; by 6 months all cones had also degenerated. Neuronal remodeling was also seen in the second-order neurons with horizontal cells sprouting processes proximally and dendritic retraction in rod-driven bipolar cells. Interestingly, the morphology of cone-driven bipolar cells were affected less by the disease process. The cellular structure of inner retinal neurons, i.e., ChAT amacrine cells, ganglion cells, and melanopsin-positive ganglion cells did not exhibit any gross changes of cell densities and appeared to be relatively unaffected by the massive photoreceptor degeneration in the distal retina. However, Muller cell processes began to express GFAP at their endfeet at p14, and it climbed progressively to the cell’s distal ends by 6 months. Our study indicates that FVB/N mouse provides a useful model with which to assess possible intervention strategies to arrest photoreceptor death in related diseases.
    Description: This study was supported by grants from the National Science Foundation (NSF, IOS-1021646, WS) and the National Eye Institute (NEI, EY 14161, WS).
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    Observations of water mass transformation and eddies in the Lofoten basin of the Nordic Seas (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1735–1756, doi:10.1175/JPO-D-14-0238.1.
    Description: The Lofoten basin of the Nordic Seas is recognized as a crucial component of the meridional overturning circulation in the North Atlantic because of the large horizontal extent of Atlantic Water and winter surface buoyancy loss. In this study, hydrographic and current measurements collected from a mooring deployed in the Lofoten basin from July 2010 to September 2012 are used to describe water mass transformation and the mesoscale eddy field. Winter mixed layer depths (MLDs) are observed to reach approximately 400 m, with larger MLDs and denser properties resulting from the colder 2010 winter. A heat budget of the upper water column requires lateral input, which balances the net annual heat loss of ~80 W m−2. The lateral flux is a result of mesoscale eddies, which dominate the velocity variability. Eddy velocities are enhanced in the upper 1000 m, with a barotropic component that reaches the bottom. Detailed examination of two eddies, from April and August 2012, highlights the variability of the eddy field and eddy properties. Temperature and salinity properties of the April eddy suggest that it originated from the slope current but was ventilated by surface fluxes. The properties within the eddy were similar to those of the mode water, indicating that convection within the eddies may make an important contribution to water mass transformation. A rough estimate of eddy flux per unit boundary current length suggests that fluxes in the Lofoten basin are larger than in the Labrador Sea because of the enhanced boundary current–interior density difference.
    Description: The work was supported by NSF OCE 0850416.
    Description: 2015-12-01
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Boundary currents ; Eddies ; Fluxes ; Mesoscale processes ; Atm/Ocean Structure/ Phenomena ; Thermohaline circulation
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    How climate change affects extremes in maize and wheat yield in two cropping regions (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 4653–4687, doi:10.1175/JCLI-D-13-00326.1.
    Description: Downscaled climate model projections from phase 5 of the Coupled Model Intercomparison Project (CMIP5) were used to force a dynamic vegetation agricultural model (Agro-IBIS) and simulate yield responses to historical climate and two future emissions scenarios for maize in the U.S. Midwest and wheat in southeastern Australia. In addition to mean changes in yield, the frequency of high- and low-yield years was related to changing local hydroclimatic conditions. Particular emphasis was on the seasonal cycle of climatic variables during extreme-yield years and links to crop growth. While historically high (low) yields in Iowa tend to occur during years with anomalous wet (dry) growing season, this is exacerbated in the future. By the end of the twenty-first century, the multimodel mean (MMM) of growing season temperatures in Iowa is projected to increase by more than 5°C, and maize yield is projected to decrease by 18%. For southeastern Australia, the frequency of low-yield years rises dramatically in the twenty-first century because of significant projected drying during the growing season. By the late twenty-first century, MMM growing season precipitation in southeastern Australia is projected to decrease by 15%, temperatures are projected to increase by 2.8°–4.5°C, and wheat yields are projected to decline by 70%. Results highlight the sensitivity of yield projections to the nature of hydroclimatic changes. Where future changes are uncertain, the sign of the yield change simulated by Agro-IBIS is uncertain as well. In contrast, broad agreement in projected drying over southern Australia across models is reflected in consistent yield decreases for the twenty-first century. Climatic changes of the order projected can be expected to pose serious challenges for continued staple grain production in some current centers of production, especially in marginal areas.
    Description: This work was initiated at the Dissertations Initiative for the Advancement of Climate Change Research (DISCCRS) V Symposium, supported by the U.S. National Science Foundation through collaborative Grants SES-0932916 and SES-0931402. CCU was supported by a University of New South Wales Vice-Chancellor Fellowship and the Penzance Endowed Fund and John P. Chase Memorial Endowed Fund at WHOI. TET was supported by the U.S. Department of Energy Award DE-EE0004397. NC was funded by NSF Grant EAR-1204774. We are indebted to the FORMAS-funded Land Use Today and Tomorrow (LUsTT) project (Grant 211-2009-1682) for financial support.
    Keywords: Australia ; North America ; Climate change ; Climate models ; Climate variability ; Agriculture
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    Understanding ENSO diversity (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 921–938, doi:10.1175/BAMS-D-13-00117.1.
    Description: El Niño–Southern Oscillation (ENSO) is a naturally occurring mode of tropical Pacific variability, with global impacts on society and natural ecosystems. While it has long been known that El Niño events display a diverse range of amplitudes, triggers, spatial patterns, and life cycles, the realization that ENSO’s impacts can be highly sensitive to this event-to-event diversity is driving a renewed interest in the subject. This paper surveys our current state of knowledge of ENSO diversity, identifies key gaps in understanding, and outlines some promising future research directions.
    Description: AC acknowledges support from the National Science Foundation for this study.
    Description: 2015-12-01
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    Spontaneous generation of near-inertial waves by the Kuroshio Front (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2381–2406, doi:10.1175/JPO-D-14-0086.1.
    Description: While near-inertial waves are known to be generated by atmospheric storms, recent observations in the Kuroshio Front find intense near-inertial internal-wave shear along sloping isopycnals, even during calm weather. Recent literature suggests that spontaneous generation of near-inertial waves by frontal instabilities could represent a major sink for the subinertial quasigeostrophic circulation. An unforced three-dimensional 1-km-resolution model, initialized with the observed cross-Kuroshio structure, is used to explore this mechanism. After several weeks, the model exhibits growth of 10–100-km-scale frontal meanders, accompanied by O(10) mW m−2 spontaneous generation of near-inertial waves associated with readjustment of submesoscale fronts forced out of balance by mesoscale confluent flows. These waves have properties resembling those in the observations. However, they are reabsorbed into the model Kuroshio Front with no more than 15% dissipating or radiating away. Thus, spontaneous generation of near-inertial waves represents a redistribution of quasigeostrophic energy rather than a significant sink.
    Description: “The Study of Kuroshio Ecosystem Dynamics for Sustainable Fisheries (SKED)” supported by MEXT, MIT-Hayashi Seed Fund, ONR (Awards N000140910196 and N000141210101), NSF (Award OCE 0928617, 0928138) for support.
    Description: 2016-03-01
    Keywords: Circulation/ Dynamics ; Frontogenesis/frontolysis ; Fronts ; Internal waves ; Turbulence ; Upwelling/downwelling ; Atm/Ocean Structure/ Phenomena ; Jets
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    Wintertime atmospheric response to North Atlantic Ocean circulation variability in a climate model (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 7659–7677, doi:10.1175/JCLI-D-15-0007.1.
    Description: Maximum covariance analysis of a preindustrial control simulation of the NCAR Community Climate System Model, version 4 (CCSM4), shows that a barotropic signal in winter broadly resembling a negative phase of the North Atlantic Oscillation (NAO) follows an intensification of the Atlantic meridional overturning circulation (AMOC) by about 7 yr. The delay is due to the cyclonic propagation along the North Atlantic Current (NAC) and the subpolar gyre of a SST warming linked to a northward shift and intensification of the NAC, together with an increasing SST cooling linked to increasing southward advection of subpolar water along the western boundary and a southward shift of the Gulf Stream (GS). These changes result in a meridional SST dipole, which follows the AMOC intensification after 6 or 7 yr. The SST changes were initiated by the strengthening of the western subpolar gyre and by bottom torque at the crossover of the deep branches of the AMOC with the NAC on the western flank of the Mid-Atlantic Ridge and the GS near the Tail of the Grand Banks, respectively. The heat flux damping of the SST dipole shifts the region of maximum atmospheric transient eddy growth southward, leading to a negative NAO-like response. No significant atmospheric response is found to the Atlantic multidecadal oscillation (AMO), which is broadly realistic but shifted south and associated with a much weaker meridional SST gradient than the AMOC fingerprint. Nonetheless, the wintertime atmospheric response to the AMOC shows some similarity with the observed response to the AMO, suggesting that the ocean–atmosphere interactions are broadly realistic in CCSM4.
    Description: Support from the NOAA Climate Program Office (NA10OAR4310202 and NA13OAR4310139), NSF EaSM2 (OCE 1242989) and the European Community 7th framework programme (FP7 2007-2013) under Grant Agreement 308299 (NACLIM) is gratefully acknowledged. The analysis benefited from the IPSL Prodiguer-Ciclad facility, which is supported by CNRS, UPMC, Labex L-IPSL funded by the ANR (Grant ANR-10-LABX-0018) and by the European FP7 IS-ENES2 project (Grant 312979).
    Description: 2016-04-01
    Keywords: Meridional overturning circulation ; North Atlantic Oscillation ; Climate models ; Climate variability
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    Lidar and pressure measurements of inner-surfzone waves and setup (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 1945–1959, doi:10.1175/JTECH-D-14-00222.1.
    Description: Observations of waves and setup on a steep, sandy beach are used to identify and assess potential applications of spatially dense lidar measurements for studying inner-surf and swash-zone hydrodynamics. There is good agreement between lidar- and pressure-based estimates of water levels (r2 = 0.98, rmse = 0.05 m), setup (r2 = 0.92, rmse = 0.03 m), infragravity wave heights (r2 = 0.91, rmse = 0.03 m), swell–sea wave heights (r2 = 0.87, rmse = 0.07 m), and energy density spectra. Lidar observations did not degrade with range (up to 65 m offshore of the lidar) when there was sufficient foam present on the water surface to generate returns, suggesting that for narrow-beam 1550-nm light, spatially varying spot size, grazing angle affects, and linear interpolation (to estimate the water surface over areas without returns) are not large sources of error. Consistent with prior studies, the lidar and pressure observations indicate that standing infragravity waves dominate inner-surf and swash energy at low frequencies and progressive swell–sea waves dominate at higher frequencies. The spatially dense lidar measurements enable estimates of reflection coefficients from pairs of locations at a range of spatial lags (thus spanning a wide range of frequencies or wavelengths). Reflection is high at low frequencies, increases with beach slope, and decreases with increasing offshore wave height, consistent with prior studies. Lidar data also indicate that wave asymmetry increases rapidly across the inner surf and swash. The comparisons with pressure measurements and with theory demonstrate that lidar measures inner-surf waves and setup accurately, and can be used for studies of inner-surf and swash-zone hydrodynamics.
    Description: Funding was provided by the USACE Coastal Field Data Collection (CFDC) and Coastal Ocean Data Systems (CODS) programs, the Office of Naval Research, the National Science Foundation, and the Assistant Secretary of Defense (R&E).
    Description: 2016-04-01
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    Biases in Thorpe-scale estimates of turbulence dissipation. Part I : Assessments from large-scale overturns in oceanographic data (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2497–2521, doi:10.1175/JPO-D-14-0128.1.
    Description: Oceanic density overturns are commonly used to parameterize the dissipation rate of turbulent kinetic energy. This method assumes a linear scaling between the Thorpe length scale LT and the Ozmidov length scale LO. Historic evidence supporting LT ~ LO has been shown for relatively weak shear-driven turbulence of the thermocline; however, little support for the method exists in regions of turbulence driven by the convective collapse of topographically influenced overturns that are large by open-ocean standards. This study presents a direct comparison of LT and LO, using vertical profiles of temperature and microstructure shear collected in the Luzon Strait—a site characterized by topographically influenced overturns up to O(100) m in scale. The comparison is also done for open-ocean sites in the Brazil basin and North Atlantic where overturns are generally smaller and due to different processes. A key result is that LT/LO increases with overturn size in a fashion similar to that observed in numerical studies of Kelvin–Helmholtz (K–H) instabilities for all sites but is most clear in data from the Luzon Strait. Resultant bias in parameterized dissipation is mitigated by ensemble averaging; however, a positive bias appears when instantaneous observations are depth and time integrated. For a series of profiles taken during a spring tidal period in the Luzon Strait, the integrated value is nearly an order of magnitude larger than that based on the microstructure observations. Physical arguments supporting LT ~ LO are revisited, and conceptual regimes explaining the relationship between LT/LO and a nondimensional overturn size are proposed. In a companion paper, Scotti obtains similar conclusions from energetics arguments and simulations.
    Description: B.D.M. and S.K.V. gratefully acknowledge the support of the Office of Naval Research under Grants N00014-12-1-0279, N00014-12-1-0282, and N00014-12-1-0938 (Program Manager: Dr. Terri Paluszkiewicz). S.K.V. also acknowledges support of the National Science Foundation under Grant OCE-1151838. L.S.L. acknowledges support for BBTRE by the National Science Foundation by Contract OCE94-15589 and NATRE and IWISE by the Office of Naval Research by Contracts N00014-92-1323 and N00014-10-10315. J.N.M. was supported through Grant 1256620 from the National Science Foundation and the Office of Naval Research (IWISE Project).
    Description: 2016-04-01
    Keywords: Circulation/ Dynamics ; Diapycnal mixing ; Small scale processes ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Mixing ; Observational techniques and algorithms ; Profilers, oceanic ; Models and modeling ; Parameterization
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    Characterization and modulation of Langmuir circulation in Chesapeake Bay (2015)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2621–2639, doi:10.1175/JPO-D-14-0239.1.
    Description: Measurements made as part of a large-scale experiment to examine wind-driven circulation and mixing in Chesapeake Bay demonstrate that circulations consistent with Langmuir circulation play an important role in surface boundary layer dynamics. Under conditions when the turbulent Langmuir number Lat is low (〈0.5), the surface mixed layer is characterized by 1) elevated vertical turbulent kinetic energy; 2) decreased anisotropy; 3) negative vertical velocity skewness indicative of strong/narrow downwelling and weak/broad upwelling; and 4) strong negative correlations between low-frequency vertical velocity and the velocity in the direction of wave propagation. These characteristics appear to be primarily the result of the vortex force associated with the surface wave field, but convection driven by a destabilizing heat flux is observed and appears to contribute significantly to the observed negative vertical velocity skewness. Conditions that favor convection usually also have strong Langmuir forcing, and these two processes probably both contribute to the surface mixed layer turbulence. Conditions in which traditional stress-driven turbulence is important are limited in this dataset. Unlike other shallow coastal systems where full water column Langmuir circulation has been observed, the salinity stratification in Chesapeake Bay is nearly always strong enough to prevent full-depth circulation from developing.
    Description: The funding for this research was provided by the National Science Foundation Grants OCE-1339032 and OCE-1338518.
    Description: 2016-04-01
    Keywords: Circulation/ Dynamics ; Convection ; Instability ; Mixing ; Turbulence ; Wave breaking ; Wind stress
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    The annual cycle of the Japan Sea throughflow (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 23–39, doi:10.1175/JPO-D-15-0075.1.
    Description: The mechanism responsible for the annual cycle of the flow through the straits of the Japan Sea is investigated using a two-layer model. Observations show maximum throughflow from summer to fall and minimum in winter, occurring synchronously at the three major straits: Tsushima, Tsugaru, and Soya Straits. This study finds the subpolar winds located to the north of Japan as the leading forcing agent, which first affects the Soya Strait rather than the Tsushima or Tsugaru Straits. The subpolar winds generate baroclinic Kelvin waves along the coastlines of the subpolar gyre, affect the sea surface height at the Soya Strait, and modify the flow through the strait. This causes barotropic adjustment to occur inside the Japan Sea and thus affect the flow at the Tsugaru and Tsushima Straits almost synchronously. The barotropic adjustment mechanism explains well why the observations show a similar annual cycle at the three straits. The annual cycle at the Tsugaru Strait is further shown to be weaker than that in the other two straits based on frictional balance around islands, that is, frictional stresses exerted around an island integrate to zero. In the Tsugaru Strait, the flows induced by the frictional integrals around the northern (Hokkaido) and southern (Honshu) islands are in opposite directions and tend to cancel out. Frictional balance also suggests that the annual cycle at the Tsugaru Strait is likely in phase with that at the Soya Strait because the length scale of the northern island is much shorter than that of the southern island.
    Description: S. Kida is supported by KAKENHI (22106002). B. Qiu is supported by NASA (NNX13AE15G). J. Yang is supported by the U.S. National Science Foundation. X. Lin is supported by the Natural Science Foundation of China (41222037 and U1406401), China’s National Basic Research Priorities Programme (2013CB956202), and the Global Air-Sea Interaction Project (GASI-03-01-01-02).
    Description: 2016-07-01
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    Tidal mixing in the South China Sea : an estimate based on the internal tide energetics (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 107–124, doi:10.1175/JPO-D-15-0082.1.
    Description: By taking into account the contributions of both locally and remotely generated internal tides, the tidal mixing in the Luzon Strait (LS) and the South China Sea (SCS) is investigated through internal-tide simulation and energetics analysis. A three-dimensional nonhydrostatic high-resolution model driven by four primary tidal constituents (M2, S2, K1, and O1) is used for the internal-tide simulation. The baroclinic energy budget analysis reveals that the internal tides radiated from the LS are the dominant energy source for the tidal dissipation in the SCS. In the LS, the estimated depth-integrated turbulent kinetic energy dissipation exceeds O(1) W m−2 atop the two subsurface ridges, with a dissipation rate of 〉O(10−7) W kg−1 and diapycnal diffusivity of ~O(10−2) m2 s−1. In the SCS, the most intense turbulence occurs in the deep-water basin with a dissipation rate of O(10−8–10−6) W kg−1 and diapycnal diffusivity of O(10−3–10−1) m2 s−1 within the ~2000-m water column above the seafloor as well as in the shelfbreak region with a dissipation rate of O(10−7–10−6) W kg−1 and diapycnal diffusivity of O(10−4–10−3) m2 s−1. These estimated values are consistent with observations reported in previous studies and are at least one order of magnitude larger than those based solely on locally generated internal tides.
    Description: This work is jointly supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA11010304, XDA11010204), the MOST of China (2014CB953904), the Knowledge Innovation Program of the Chinese Academy of Sciences (SQ201305), and National Natural Science Foundation of China (41376021, 41306013). ZL’s participation of this work was supported by the National Natural Science Foundation of China (41476006), the Natural Science Foundation of Fujian Province of China (2015J06010), and the National Basic Research Program of China (2012CB417402).
    Description: 2016-07-01
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    AMS radiocarbon dating of large za baobabs (Adansonia za) of Madagascar (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0146977, doi:10.1371/journal.pone.0146977 .
    Description: The article reports the radiocarbon investigation of Anzapalivoro, the largest za baobab (Adansonia za) specimen of Madagascar and of another za, namely the Big cistern baobab. Several wood samples collected from the large inner cavity and from the outer part/exterior of the tree were investigated by AMS (accelerator mass spectrometry) radiocarbon dating. For samples collected from the cavity walls, the age values increase with the distance into the wood up to a point of maximum age, after which the values decrease toward the outer part. This anomaly of age sequences indicates that the inner cavity of Anzapalivoro is a false cavity, practically an empty space between several fused stems disposed in a ring-shaped structure. The radiocarbon date of the oldest sample was 780 ± 30 bp, which corresponds to a calibrated age of around 735 yr. Dating results indicate that Anzapalivoro has a closed ring-shaped structure, which consists of 5 fused stems that close a false cavity. The oldest part of the biggest za baobab has a calculated age of 900 years. We also disclose results of the investigation of a second za baobab, the Big cistern baobab, which was hollowed out for water storage. This specimen, which consists of 4 fused stems, was found to be around 260 years old.
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    A microscale view of mixing and overturning across the Antarctic Circumpolar Current (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 233–254, doi:10.1175/JPO-D-15-0025.1.
    Description: The relative roles of isoneutral stirring by mesoscale eddies and dianeutral stirring by small-scale turbulence in setting the large-scale temperature–salinity relation of the Southern Ocean against the action of the overturning circulation are assessed by analyzing a set of shear and temperature microstructure measurements across Drake Passage in a “triple decomposition” framework. It is shown that a picture of mixing and overturning across a region of the Antarctic Circumpolar Current (ACC) may be constructed from a relatively modest number of microstructure profiles. The rates of isoneutral and dianeutral stirring are found to exhibit distinct, characteristic, and abrupt variations: most notably, a one to two orders of magnitude suppression of isoneutral stirring in the upper kilometer of the ACC frontal jets and an order of magnitude intensification of dianeutral stirring in the subpycnocline and deepest layers of the ACC. These variations balance an overturning circulation with meridional flows of O(1) mm s−1 across the ACC’s mean thermohaline structure. Isoneutral and dianeutral stirring play complementary roles in balancing the overturning, with isoneutral processes dominating in intermediate waters and the Upper Circumpolar Deep Water and dianeutral processes prevailing in lighter and denser layers.
    Description: The DIMES experiment was funded by the U.K. Natural Environment Research Council (NERC) and the U.S. National Science Foundation (NSF). ACNG acknowledges the support of a Philip Leverhulme Prize, the Royal Society, and the Wolfson Foundation. JDZ acknowledges the support of a NERC Research Fellowship.
    Description: 2016-07-01
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    Biochemical mechanisms for geographical adaptations to novel toxin exposures in butterflyfish (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The definitive version was published in PLoS One 11 (2016): e0154208, doi: 10.1371/journal.pone.0154208
    Description: Some species of butterflyfish have had preyed upon corals for millions of years, yet the mechanism of butterflyfish specialized coral feeding strategy remains poorly understood. Certain butterflyfish have the ability to feed on allelochemically rich soft corals, e.g. Sinularia maxima. Cytochrome P450 (CYP) is the predominant enzyme system responsible for the detoxification of dietary allelochemicals. CYP2-like and CYP3A-like content have been associated with butterflyfish that preferentially consumes allelochemically rich soft corals. To investigate the role of butterflyfish CYP2 and CYP3A enzymes in dietary preference, we conducted oral feeding experiments using homogenates of S. maxima and a toxin isolated from the coral in four species of butterflyfish with different feeding strategies. After oral exposure to the S. maxima toxin 5-episinulaptolide (5ESL), which is not normally encountered in the Hawaiian butterflyfish diet, an endemic specialist, Chaetodon multicinctus experienced 100% mortality compared to a generalist, Chaetodon auriga, which had significantly more (3–6 fold higher) CYP3A-like basal content and catalytic activity. The specialist, Chaetodon unimaculatus, which preferentially feed on S. maxima in Guam, but not in Hawaii, had 100% survival, a significant induction of 8–12 fold CYP3A-like content, and an increased ability (2-fold) to metabolize 5ESL over other species. Computer modeling data of CYP3A4 with 5ESL were consistent with microsomal transformation of 5ESL to a C15-16 epoxide from livers of C. unimaculatus. Epoxide formation correlated with CYP3A-like content, catalytic activity, induction, and NADPH-dependent metabolism of 5ESL. These results suggest a potentially important role for the CYP3A family in butterflyfish-coral diet selection through allelochemical detoxification.
    Description: This work received support from the following sources: Resource Allocation Program of the Agricultural Research Station for UCR to DS; Summer funding by Hilda and George Liebig Environmental Sciences Summer Fellowship and travel grant Albert March Environmental Sciences Scholarship from the University of California, Riverside; and the Chemistry and DMPK CORE of COBRE, P20GM104932 from the National Institute of General Medical Sciences (NIGMS), a component of the National Institutes of Health (NIH) supported the chemistry studies.
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    Impact of a localized source of subglacial discharge on the heat flux and submarine melting of a tidewater glacier : a laboratory study (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3155-3163, doi:10.1175/JPO-D-16-0123.1.
    Description: Idealized laboratory experiments have been conducted in a two-layer stratified fluid to investigate the leading-order dynamics that control submarine melting and meltwater export near a vertical ice–ocean interface as a function of subglacial discharge. In summer, the discharge of surface runoff at the base of a glacier (subglacial discharge) generates strong buoyant plumes that rise along the glacier front entraining ambient water along the way. The entrainment enhances the heat transport toward the glacier front and hence the submarine melt rate increases with the subglacial discharge rate. In the laboratory, the effect of subglacial discharge is simulated by introducing freshwater at freezing temperature from a point source at the base of an ice block representing the glacier. The circulation pattern observed both with and without subglacial discharge resembles those observed in previous observational and numerical studies. Buoyant plumes rise vertically until they find either their neutrally buoyant level or the free surface. Hence, the meltwater can deposit within the interior of the water column and not entirely at the free surface, as confirmed by field observations. The heat budget in the tank, calculated following a new framework, gives estimates of submarine melt rate that increase with the subglacial discharge and are in agreement with the directly measured submarine melting. This laboratory study provides the first direct measurements of submarine melt rates for different subglacial discharges, and the results are consistent with the predictions of previous theoretical and numerical studies.
    Description: Support to C. C. was given by the NSF project OCE- 1130008 and OCE-1434041. M. G. received support from the ‘‘Gori’’ Fellowship.
    Description: 2017-04-07
    Keywords: Glaciers ; Buoyancy ; Density currents ; Turbulence ; Laboratory/physical models
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    Smartphone-based distributed data collection enables rapid assessment of shorebird habitat suitability (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright. The definitive version was published in PLoS ONE 11 (2016): e0164979, doi: 10.1371/journal.pone.0164979.
    Description: Understanding and managing dynamic coastal landscapes for beach-dependent species requires biological and geological data across the range of relevant environments and habitats. It is difficult to acquire such information; data often have limited focus due to resource constraints, are collected by non-specialists, or lack observational uniformity. We developed an open-source smartphone application called iPlover that addresses these difficulties in collecting biogeomorphic information at piping plover (Charadrius melodus) nest sites on coastal beaches. This paper describes iPlover development and evaluates data quality and utility following two years of collection (n = 1799 data points over 1500 km of coast between Maine and North Carolina, USA). We found strong agreement between field user and expert assessments and high model skill when data were used for habitat suitability prediction. Methods used here to develop and deploy a distributed data collection system have broad applicability to interdisciplinary environmental monitoring and modeling.
    Description: This work was supported by the North Atlantic Landscape Conservation Cooperative through the U.S. Department of the Interior Hurricane Sandy recovery program under the Disaster Relief Appropriations Act of 2013, and the U.S. Geological Survey Coastal and Marine Geology Program.
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    Satellite and in situ salinity : understanding near-surface stratification and subfootprint variability (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 97 (2016): 1391-1407, doi:10.1175/BAMS-D-15-00032.1.
    Description: Remote sensing of salinity using satellite-mounted microwave radiometers provides new perspectives for studying ocean dynamics and the global hydrological cycle. Calibration and validation of these measurements is challenging because satellite and in situ methods measure salinity differently. Microwave radiometers measure the salinity in the top few centimeters of the ocean, whereas most in situ observations are reported below a depth of a few meters. Additionally, satellites measure salinity as a spatial average over an area of about 100 × 100 km2. In contrast, in situ sensors provide pointwise measurements at the location of the sensor. Thus, the presence of vertical gradients in, and horizontal variability of, sea surface salinity complicates comparison of satellite and in situ measurements. This paper synthesizes present knowledge of the magnitude and the processes that contribute to the formation and evolution of vertical and horizontal variability in near-surface salinity. Rainfall, freshwater plumes, and evaporation can generate vertical gradients of salinity, and in some cases these gradients can be large enough to affect validation of satellite measurements. Similarly, mesoscale to submesoscale processes can lead to horizontal variability that can also affect comparisons of satellite data to in situ data. Comparisons between satellite and in situ salinity measurements must take into account both vertical stratification and horizontal variability.
    Description: 2017-02-28
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    Can Australian multiyear droughts and wet spells be generated in the absence of oceanic variability? (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 6201-6221, doi:10.1175/JCLI-D-15-0694.1.
    Description: Anomalous conditions in the tropical oceans, such as those related to El Niño–Southern Oscillation and the Indian Ocean dipole, have been previously blamed for extended droughts and wet periods in Australia. Yet the extent to which Australian wet and dry spells can be driven by internal atmospheric variability remains unclear. Natural variability experiments are examined to determine whether prolonged extreme wet and dry periods can arise from internal atmospheric and land variability alone. Results reveal that this is indeed the case; however, these dry and wet events are found to be less severe than in simulations incorporating coupled oceanic variability. Overall, ocean feedback processes increase the magnitude of Australian rainfall variability by about 30% and give rise to more spatially coherent rainfall impacts. Over mainland Australia, ocean interactions lead to more frequent extreme events, particularly during the rainy season. Over Tasmania, in contrast, ocean–atmosphere coupling increases mean rainfall throughout the year. While ocean variability makes Australian rainfall anomalies more severe, droughts and wet spells of duration longer than three years are equally likely to occur in both atmospheric- and ocean-driven simulations. Moreover, they are essentially indistinguishable from what one expects from a Gaussian white noise distribution. Internal atmosphere–land-driven megadroughts and megapluvials that last as long as ocean-driven events are also identified in the simulations. This suggests that oceanic variability may be less important than previously assumed for the long-term persistence of Australian rainfall anomalies. This poses a challenge to accurate prediction of long-term dry and wet spells for Australia.
    Description: This study was supported by the Australian Research Council (ARC) under ARC-DP1094784, ARC-DP-150101331, ARC-FL100100214, and funding for C.C.U. from the National Science Foundation under AGS-1602455 and the ARC Centre of Excellence for Climate System Science.
    Description: 2017-02-19
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Atm/Ocean Structure/ Phenomena ; Drought ; Precipitation ; Physical Meteorology and Climatology ; Climate variability ; Forecasting ; Climate prediction ; Variability
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    A theory of the wind-driven Beaufort Gyre variability (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3263-3278, doi:10.1175/JPO-D-16-0091.1.
    Description: The halocline of the Beaufort Gyre varies significantly on interannual to decadal time scales, affecting the freshwater content (FWC) of the Arctic Ocean. This study explores the role of eddies in the Ekman-driven gyre variability. Following the transformed Eulerian-mean paradigm, the authors develop a theory that links the FWC variability to the stability of the large-scale gyre, defined as the inverse of its equilibration time. The theory, verified with eddy-resolving numerical simulations, demonstrates that the gyre stability is explicitly controlled by the mesoscale eddy diffusivity. An accurate representation of the halocline dynamics requires the eddy diffusivity of 300 ± 200 m2 s−1, which is lower than what is used in most low-resolution climate models. In particular, on interannual and longer time scales the eddy fluxes and the Ekman pumping provide equally important contributions to the FWC variability. However, only large-scale Ekman pumping patterns can significantly alter the FWC, with spatially localized perturbations being an order of magnitude less efficient. Lastly, the authors introduce a novel FWC tendency diagnostic—the Gyre Index—that can be conveniently calculated using observations located only along the gyre boundaries. Its strong predictive capabilities, assessed in the eddy-resolving model forced by stochastic winds, suggest that the Gyre Index would be of use in interpreting FWC evolution in observations as well as in numerical models.
    Description: GEMacknowledges the support from theHowland Postdoctoral Program Fund at WHOI and the Stanback Fellowship Fund at Caltech.MAS was supported by NSF Grants PLR-1415489 and OCE-1232389. AFT acknowledges support from NASA Award NNN12AA01C.
    Description: 2017-04-20
    Keywords: Arctic ; Eddies ; Ekman pumping/transport ; Large-scale motions ; Ocean circulation ; Stability
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    Coral reef drag coefficients – water depth dependence (2017)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 47 (2017): 1061-1075, doi:10.1175/JPO-D-16-0248.1.
    Description: A major challenge in modeling the circulation over coral reefs is uncertainty in the drag coefficient because existing estimates span two orders of magnitude. Current and pressure measurements from five coral reefs are used to estimate drag coefficients based on depth-average flow, assuming a balance between the cross-reef pressure gradient and the bottom stress. At two sites wind stress is a significant term in the cross-reef momentum balance and is included in estimating the drag coefficient. For the five coral reef sites and a previous laboratory study, estimated drag coefficients increase as the water depth decreases consistent with open channel flow theory. For example, for a typical coral reef hydrodynamic roughness of 5 cm, observational estimates, and the theory indicate that the drag coefficient decreases from 0.4 in 20 cm of water to 0.005 in 10 m of water. Synthesis of results from the new field observations with estimates from previous field and laboratory studies indicate that coral reef drag coefficients range from 0.2 to 0.005 and hydrodynamic roughnesses generally range from 2 to 8 cm. While coral reef drag coefficients depend on factors such as physical roughness and surface waves, a substantial fraction of the scatter in estimates of coral reef drag coefficients is due to variations in water depth.
    Description: The Red Sea field program was supported by Awards USA 00002 and KSA 00011 made by KAUST to S. Lentz and J. Churchill. The Palau field program was funded by NSF Award OCE-1220529.
    Keywords: Ocean ; Currents ; Wind stress ; Boundary layer ; Sea level ; Tides
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    Generation of internal solitary waves by lateral circulation in a stratified estuary (2017)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 47 (2017): 1789-1797, doi:10.1175/JPO-D-16-0240.1.
    Description: Internal solitary waves are commonly observed in the coastal ocean where they are known to contribute to mass transport and turbulent mixing. While these waves are often generated by cross-isobath barotropic tidal currents, novel observations are presented suggesting that internal solitary waves result from along-isobath tidal flows over channel-shoal bathymetry. Mooring and ship-based velocity, temperature, and salinity data were collected over a cross-channel section in a stratified estuary. The data show that Ekman forcing on along-channel tidal currents drives lateral circulation, which interacts with the stratified water over the deep channel to generate a supercritical mode-2 internal lee wave. This lee wave propagates onto the shallow shoal and evolves into a group of internal solitary waves of elevation due to nonlinear steepening. These observations highlight the potential importance of three-dimensionality on the conversion of tidal flow to internal waves in the rotating ocean.
    Description: National Science Foundation (OCE-1061609)
    Description: 2018-01-03
    Keywords: Estuaries ; Internal waves ; Solitary waves
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    Distinct influence of air–sea interactions mediated by mesoscale sea surface temperature and surface current in the Arabian Sea (2017)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 30 (2017): 8061-8080, doi:10.1175/JCLI-D-16-0834.1.
    Description: During the southwest monsoons, the Arabian Sea (AS) develops highly energetic mesoscale variability associated with the Somali Current (SC), Great Whirl (GW), and cold filaments (CF). The resultant high-amplitude anomalies and gradients of sea surface temperature (SST) and surface currents modify the wind stress, triggering the so-called mesoscale coupled feedbacks. This study uses a high-resolution regional coupled model with a novel coupling procedure that separates spatial scales of the air–sea coupling to show that SST and surface currents are coupled to the atmosphere at distinct spatial scales, exerting distinct dynamic influences. The effect of mesoscale SST–wind interaction is manifested most strongly in wind work and Ekman pumping over the GW, primarily affecting the position of GW and the separation latitude of the SC. If this effect is suppressed, enhanced wind work and a weakened Ekman pumping dipole cause the GW to extend northeastward, delaying the SC separation by 1°. Current–wind interaction, in contrast, is related to the amount of wind energy input. When it is suppressed, especially as a result of background-scale currents, depth-integrated kinetic energy, both the mean and eddy, is significantly enhanced. Ekman pumping velocity over the GW is overly negative because of a lack of vorticity that offsets the wind stress curl, further invigorating the GW. Moreover, significant changes in time-mean SST and evaporation are generated in response to the current–wind interaction, accompanied by a noticeable southward shift in the Findlater Jet. The significant increase in moisture transport in the central AS implies that air–sea interaction mediated by the surface current is a potentially important process for simulation and prediction of the monsoon rainfall.
    Description: This work is supported by ONR (N00014-15-1-2588 and N00014-17-1-2398), NSF (OCE- 1419235), and NOAA (NA15OAR4310176).
    Description: 2018-03-08
    Keywords: Indian Ocean ; Wind stress ; Ekman pumping ; Monsoons ; Air-sea interaction ; Coupled models
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    Thermocline fluctuations in the equatorial Pacific related to the two types of El Niño events (2017)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2017. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 30 (2017): 6611-6627, doi:10.1175/JCLI-D-16-0291.1.
    Description: The interannual fluctuations of the equatorial thermocline are usually associated with El Niño activity, but the linkage between the thermocline modes and El Niño is still under debate. In the present study, a mode function decomposition method is applied to the equatorial Pacific thermocline, and the results show that the first two dominant modes (M1 and M2) identify two distinct characteristics of the equatorial Pacific thermocline. The M1 reflects a basinwide zonally tilted thermocline related to the eastern Pacific (EP) El Niño, with shoaling (deepening) in the western (eastern) equatorial Pacific. The M2 represents the central Pacific (CP) El Niño, characterized by a V-shaped equatorial Pacific thermocline (i.e., deep in the central equatorial Pacific and shallow on both the western and eastern boundaries). Furthermore, both modes are stable and significant on the interannual time scale, and manifest as the major feature of the thermocline fluctuations associated with the two types of El Niño events. As good proxies of EP and CP El Niño events, thermocline-based indices clearly reveal the inherent characteristics of subsurface ocean responses during the evolution of El Niño events, which are characterized by the remarkable zonal eastward propagation of equatorial subsurface ocean temperature anomalies, particularly during the CP El Niño. Further analysis of the mixed layer heat budget suggests that the air–sea interactions determine the establishment and development stages of the CP El Niño, while the thermocline feedback is vital for its further development. These results highlight the key influence of equatorial Pacific thermocline fluctuations in conjunction with the air–sea interactions, on the CP El Niño.
    Description: This work is jointly supported by the Funds for Creative Research Groups of China (Grant 41521005), the Special Fund for Public Welfare Industry (GYHY201506013), the Strategic Priority Research Program of the Chinese Academy of Sciences (Grant XDA11010301), and the National Natural Science Foundation of China (Grants 41406033, 41475057, 41376024, 41676013) and the CAS/SAFEA International Partnership Program for Creative Research Teams.
    Description: 2018-01-21
    Keywords: Thermocline ; El Nino
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    Dominant circulation patterns of the deep Gulf of Mexico (2018)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 511-529, doi:10.1175/JPO-D-17-0140.1.
    Description: The large-scale circulation of the bottom layer of the Gulf of Mexico is analyzed, with special attention to the historically least studied western basin. The analysis is based on 4 years of data collected by 158 subsurface floats parked at 1500 and 2500 m and is complemented with data collected by current meter moorings in the western basin during the same period. Three main circulation patterns stand out: a cyclonic boundary current, a cyclonic gyre in the abyssal plain, and the very high eddy kinetic energy observed in the eastern Gulf. The boundary current and the cyclonic gyre appear as distinct features, which interact in the western tip of the Yucatan shelf. The persistence and continuity of the boundary current is addressed. Although high variability is observed, the boundary flow serves as a pathway for water to travel around the western basin in approximately 2 years. An interesting discovery is the separation of the boundary current over the northwestern slope of the Yucatan shelf. The separation and retroflection of the along-slope current appears to be a persistent feature and is associated with anticyclonic eddies whose genesis mechanism remains to be understood. As the boundary flow separates, it feeds into the westward flow of the deep cyclonic gyre. The location of this gyre—named the Sigsbee Abyssal Gyre—coincides with closed geostrophic contours, so eddy–topography interaction via bottom form stresses may drive this mean flow. The contribution to the cyclonic vorticity of the gyre by modons traveling under Loop Current eddies is discussed.
    Description: This work was supported by the Bureau of Ocean Energy Management (BOEM) under Contract M10PC00112 assigned to Leidos, Inc.
    Keywords: Seas/gulfs/bays ; Abyssal circulation ; Boundary currents ; Lagrangian circulation/transport ; Large-scale motions ; Trajectories
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    Influences of Pacific climate variability on decadal subsurface ocean heat content variations in the Indian Ocean (2018)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 31 (2018): 4157-4174, doi:10.1175/JCLI-D-17-0654.1.
    Description: Decadal variabilities in Indian Ocean subsurface ocean heat content (OHC; 50–300 m) since the 1950s are examined using ocean reanalyses. This study elaborates on how Pacific variability modulates the Indian Ocean on decadal time scales through both oceanic and atmospheric pathways. High correlations between OHC and thermocline depth variations across the entire Indian Ocean Basin suggest that OHC variability is primarily driven by thermocline fluctuations. The spatial pattern of the leading mode of decadal Indian Ocean OHC variability closely matches the regression pattern of OHC on the interdecadal Pacific oscillation (IPO), emphasizing the role of the Pacific Ocean in determining Indian Ocean OHC decadal variability. Further analyses identify different mechanisms by which the Pacific influences the eastern and western Indian Ocean. IPO-related anomalies from the Pacific propagate mainly through oceanic pathways in the Maritime Continent to impact the eastern Indian Ocean. By contrast, in the western Indian Ocean, the IPO induces wind-driven Ekman pumping in the central Indian Ocean via the atmospheric bridge, which in turn modifies conditions in the southwestern Indian Ocean via westward-propagating Rossby waves. To confirm this, a linear Rossby wave model is forced with wind stresses and eastern boundary conditions based on reanalyses. This linear model skillfully reproduces observed sea surface height anomalies and highlights both the oceanic connection in the eastern Indian Ocean and the role of wind-driven Ekman pumping in the west. These findings are also reproduced by OGCM hindcast experiments forced by interannual atmospheric boundary conditions applied only over the Pacific and Indian Oceans, respectively.
    Description: This research was supported by a scholarship from the China Scholarship Council (CSC) to X. J., a research fellowship by the Alexander von Humboldt Foundation to C. C. U., an NSF OCE PO Grant (OCE- 1242989) to Y.-O. K., the ONR Young Investigator Award (N00014-15-1-2588) to H. S., and a research grant from the Ministry of Science and Technology of the People’s Republic of China to Tsinghua University (2017YFA0603902).
    Description: 2018-10-30
    Keywords: Atmosphere-ocean interaction
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    A multivariate estimate of the cold season atmospheric response to North Pacific SST variability (2018)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 31 (2018): 2771-2796, doi:10.1175/JCLI-D-17-0061.1.
    Description: The Generalized Equilibrium Feedback Analysis (GEFA) is used to distinguish the influence of the Oyashio Extension (OE) and the Kuroshio Extension (KE) variability on the atmosphere from 1979 to 2014 from that of the main SST variability modes, using seasonal mean anomalies. Remote SST anomalies are associated with each single oceanic regressor, but the multivariate approach efficiently confines their SST footprints. In autumn [October–December (OND)], the OE meridional shifts are followed by a North Pacific Oscillation (NPO)-like signal. The OE influence is not investigated in winter [December–February (DJF)] because of multicollinearity, but a robust response with a strong signal over the Bering Sea is found in late winter/early spring [February–April (FMA)], a northeastward strengthening of the Aleutian low following a northward OE shift. A robust response to the KE variability is found in autumn, but not in winter and late winter when the KE SST footprint becomes increasingly small and noisy as regressors are added in GEFA. In autumn, a positive PDO is followed by a northward strengthening of the Aleutian low and a southward shift of the storm track in the central Pacific, reflecting the surface heat flux footprint in the central Pacific. In winter, the PDO shifts the maximum baroclinicity and storm track southward, the response strongly tilts westward with height in the North Pacific, and there is a negative NAO-like teleconnection. In late winter, the North Pacific NPO-like response to the PDO interferes negatively with the response to the OE and is only detected when the OE is represented in GEFA. A different PDO influence on the atmospheric circulation is found from 1958 to 1977.
    Description: This research has received funding from the European Union 7th Framework Program (FP7 2007-2013) under Grant Agreement 308299 (NACLIM) and from NSF Grants AGS CLD 1035423 and OCE PO 1242989.
    Keywords: Atmosphere-ocean interaction ; Boundary currents ; Pacific decadal oscillation ; Atmosphere-ocean interaction ; Empirical orthogonal functions ; Regression analysis
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  • 142
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    A laboratory study of iceberg side melting in vertically sheared flows (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1367-1373, doi:10.1175/JPO-D-17-0185.1.
    Description: An earlier study indicates that the side melting of icebergs subject to vertically homogeneous horizontal velocities is controlled by two distinct regimes, which depend on the melt plume behavior and produce a nonlinear dependence of side melt rate on velocity. Here, we extend this study to consider ice blocks melting in a two-layer vertically sheared flow in a laboratory setting. It is found that the use of the vertically averaged flow speed in current melt parameterizations gives an underestimate of the submarine side melt rate, in part because of the nonlinearity of the dependence of the side melt rate on flow speed but also because vertical shear in the horizontal velocity profile fundamentally changes the flow splitting around the ice block and consequently the velocity felt by the ice surface. An observational record of 90 icebergs in a Greenland fjord suggests that this effect could produce an average underestimate of iceberg side melt rates of 21%.
    Description: A. F. was supported by NA14OAR4320106 from the National Oceanic and Atmospheric Administration, U.S. Department of Commerce. C. C. was supported by NSF OCE-1658079 and F. S. was supported by NSF OCE-1657601 and NSF PLR-1743693.
    Description: 2018-12-12
    Keywords: Ocean ; Antarctica ; Arctic ; Laboratory/physical models ; Parameterization
    Repository Name: Woods Hole Open Access Server
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  • 143
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    Strength in numbers : collaborative science for new experimental model systems (2018)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: The work is made available under the Creative Commons CCO public domain dedication.. The definitive version was published in PLoS Biology 16 (2018): e2006333, doi:10.1371/journal.pbio.2006333.
    Description: Our current understanding of biology is heavily based on a small number of genetically tractable model organisms. Most eukaryotic phyla lack such experimental models, and this limits our ability to explore the molecular mechanisms that ultimately define their biology, ecology, and diversity. In particular, marine protists suffer from a paucity of model organisms despite playing critical roles in global nutrient cycles, food webs, and climate. To address this deficit, an initiative was launched in 2015 to foster the development of ecologically and taxonomically diverse marine protist genetic models. The development of new models faces many barriers, some technical and others institutional, and this often discourages the risky, long-term effort that may be required. To lower these barriers and tackle the complexity of this effort, a highly collaborative community-based approach was taken. Herein, we describe this approach, the advances achieved, and the lessons learned by participants in this novel community-based model for research.
    Description: The research efforts, connections, and collaborations described in this paper and protocols.io (https://www.protocols.io/) were supported by the Gordon and Betty Moore Foundation’s Marine Microbiology Initiative.
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  • 144
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    A global glacial ocean state estimate constrained by upper-ocean temperature proxies (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 31 (2018): 8059-8079, doi:10.1175/JCLI-D-17-0769.1.
    Description: We use the method of least squares with Lagrange multipliers to fit an ocean general circulation model to the Multiproxy Approach for the Reconstruction of the Glacial Ocean Surface (MARGO) estimate of near sea surface temperature (NSST) at the Last Glacial Maximum (LGM; circa 23–19 thousand years ago). Compared to a modern simulation, the resulting global, last-glacial ocean state estimate, which fits the MARGO data within uncertainties in a free-running coupled ocean–sea ice simulation, has global-mean NSSTs that are 2°C lower and greater sea ice extent in all seasons in both the Northern and Southern Hemispheres. Increased brine rejection by sea ice formation in the Southern Ocean contributes to a stronger abyssal stratification set principally by salinity, qualitatively consistent with pore fluid measurements. The upper cell of the glacial Atlantic overturning circulation is deeper and stronger. Dye release experiments show similar distributions of Southern Ocean source waters in the glacial and modern western Atlantic, suggesting that LGM NSST data do not require a major reorganization of abyssal water masses. Outstanding challenges in reconstructing LGM ocean conditions include reducing effects from model biases and finding computationally efficient ways to incorporate abyssal tracers in global circulation inversions. Progress will be aided by the development of coupled ocean–atmosphere–ice inverse models, by improving high-latitude model processes that connect the upper and abyssal oceans, and by the collection of additional paleoclimate observations.
    Description: DEA was supported by a NSF Graduate Research Fellowship and NSF Grant OCE-1060735. OM acknowledges support from the NSF. GF was supported by NASA Award 1553749 and Simons Foundation Award 549931.
    Keywords: Ocean ; Abyssal circulation ; Sea surface temperature ; Paleoclimate ; Inverse methods ; Ocean models
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  • 145
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    Internal tidal modal ray refraction and energy ducting in baroclinic Gulf Stream currents (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1969-1993, doi:10.1175/JPO-D-18-0031.1.
    Description: Upstream mean semidiurnal internal tidal energy flux has been found in the Gulf Stream in hydrodynamical model simulations of the Atlantic Ocean. A major source of the energy in the simulations is the south edge of Georges Bank, where strong and resonant Gulf of Maine tidal currents are found. An explanation of the flux pattern within the Gulf Stream is that internal wave modal rays can be strongly redirected by baroclinic currents and even trapped (ducted) by current jets that feature strong velocities above the thermocline that are directed counter to the modal wavenumber vector (i.e., when the waves travel upstream). This ducting behavior is analyzed and explained here with ray-based wave propagation studies for internal wave modes with anisotropic wavenumbers, as occur in mesoscale background flow fields. Two primary analysis tools are introduced and then used to analyze the strong refraction and ducting: the generalized Jones equation governing modal properties and ray equations that are suitable for studying waves with anisotropic wavenumbers.
    Description: The Woods Hole research was supported by National Science Foundation Grant OCE-1060430 and by the Office of Naval Research Grants N00014-11-1-0701 and N00014-17-1-2624. The USM research was supported by ONR Grant N00014-15-1-2288 and National Science Foundation Grant OCE-1537449.
    Description: 2019-02-28
    Keywords: Internal waves ; Wave properties ; Tides ; Differential equations ; Numerical analysis/modeling
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  • 146
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    Estuarine exchange flow is related to mixing through the salinity variance budget (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 1375-1384, doi:10.1175/JPO-D-17-0266.1.
    Description: The relationship between net mixing and the estuarine exchange flow may be quantified using a salinity variance budget. Here “mixing” is defined as the rate of destruction of volume-integrated salinity variance, and the exchange flow is quantified using the total exchange flow. These concepts are explored using an idealized 3D model estuary. It is shown that in steady state (e.g., averaging over the spring–neap cycle) the volume-integrated mixing is approximately given by Mixing ≅ SinSoutQr, where Sin and Sout are the representative salinities of in- and outflowing layers at the mouth and Qr is the river volume flux. This relationship provides an extension of the familiar Knudsen relation, in which the exchange flow is diagnosed based on knowledge of these same three quantities, quantitatively linking mixing to the exchange flow.
    Description: The work was supported by the National Science Foundation through Grants OCE-1736242 to PM and OCE-1736539 to WRG and by the German Research Foundation through Grants TRR 181 and GRK 2000 to HB.
    Keywords: Coastal flows ; Diapycnal mixing ; Ocean dynamics ; Streamflow ; Diagnostics ; Isopycnal coordinates
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  • 147
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    Deep eddies in the Gulf of Mexico observed with floats (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 2703-2719, doi:10.1175/JPO-D-17-0245.1.
    Description: A new set of deep float trajectory data collected in the Gulf of Mexico from 2011 to 2015 at 1500- and 2500-m depths is analyzed to describe mesoscale processes, with particular attention paid to the western Gulf. Wavelet analysis is used to identify coherent eddies in the float trajectories, leading to a census of the basinwide coherent eddy population and statistics of the eddies’ kinematic properties. The eddy census reveals a new formation region for anticyclones off the Campeche Escarpment, located northwest of the Yucatan Peninsula. These eddies appear to form locally, with no apparent direct connection to the upper layer. Once formed, the eddies drift westward along the northern edge of the Sigsbee Abyssal Gyre, located in the southwestern Gulf of Mexico over the abyssal plain. The formation mechanism and upstream sources for the Campeche Escarpment eddies are explored: the observational data suggest that eddy formation may be linked to the collision of a Loop Current eddy with the western boundary of the Gulf. Specifically, the disintegration of a deep dipole traveling under the Loop Current eddy Kraken, caused by the interaction with the northwestern continental slope, may lead to the acceleration of the abyssal gyre and the boundary current in the Bay of Campeche region.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M10PC00112 to Leidos, Inc., Raleigh, North Carolina.
    Description: 2019-05-07
    Keywords: Abyssal circulation ; Currents ; Eddies ; Mesoscale processes ; Trajectories ; In situ oceanic observations
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  • 148
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    Structure and forcing of observed exchanges across the Greenland–Scotland Ridge (2018)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 31 (2018): 9881-9901, doi:10.1175/JCLI-D-17-0889.1.
    Description: The Atlantic meridional overturning circulation and associated poleward heat transport are balanced by northern heat loss to the atmosphere and corresponding water-mass transformation. The circulation of northward-flowing Atlantic Water at the surface and returning overflow water at depth is particularly manifested—and observed—at the Greenland–Scotland Ridge where the water masses are guided through narrow straits. There is, however, a rich variability in the exchange of water masses across the ridge on all time scales. Focusing on seasonal and interannual time scales, and particularly the gateways of the Denmark Strait and between the Faroe Islands and Shetland, we specifically assess to what extent the exchanges of water masses across the Greenland–Scotland Ridge relate to wind forcing. On seasonal time scales, the variance explained of the observed exchanges can largely be related to large-scale wind patterns, and a conceptual model shows how this wind forcing can manifest via a barotropic, cyclonic circulation. On interannual time scales, the wind stress impact is less direct as baroclinic mechanisms gain importance and observations indicate a shift in the overflows from being more barotropically to more baroclinically forced during the observation period. Overall, the observed Greenland–Scotland Ridge exchanges reflect a horizontal (cyclonic) circulation on seasonal time scales, while the interannual variability more represents an overturning circulation.
    Description: This research was supported by the Research Council of Norway project NORTH (Grant 229763). Additional support for M. A. Spall was provided by National Science Foundation Grant OCE- 1558742, for T. Eldevik and S. Østerhus by the European Union’s Horizon 2020 research and innovation program project Blue-Action (Grant 727852), and for S. Østerhus by the European Framework Programs under Grant Agreement 308299 (NACLIM).
    Keywords: Ocean circulation ; Thermocline circulation ; Atmosphere-ocean interaction ; North Atlantic Oscillation ; Statistical techniques ; Time series
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  • 149
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    QBO influence on MJO amplitude over the Maritime Continent: Physical mechanisms and seasonality (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 147(1), (2019): 389-406. doi: 10.1175/MWR-D-18-0158.1.
    Description: The quasi-biennial oscillation (QBO) is stratified by stratospheric zonal wind direction and height into four phase pairs [easterly midstratospheric winds (QBOEM), easterly lower-stratospheric winds, westerly midstratospheric winds (QBOWM), and westerly lower-stratospheric winds] using an empirical orthogonal function analysis of daily stratospheric (100–10 hPa) zonal wind data during 1980–2017. Madden–Julian oscillation (MJO) events in which the MJO convective envelope moved eastward across the Maritime Continent (MC) during 1980–2017 are identified using the Real-time Multivariate MJO (RMM) index and the outgoing longwave radiation (OLR) MJO index (OMI). Comparison of RMM amplitudes by the QBO phase pair over the MC (RMM phases 4 and 5) reveals that boreal winter MJO events have the strongest amplitudes during QBOEM and the weakest amplitudes during QBOWM, which is consistent with QBO-driven differences in upper-tropospheric lower-stratospheric (UTLS) static stability. Additionally, boreal winter RMM events over the MC strengthen during QBOEM and weaken during QBOWM. In the OMI, those amplitude changes generally shift eastward to the eastern MC and western Pacific Ocean, which may result from differences in RMM and OMI index methodologies. During boreal summer, as the northeastward-propagating boreal summer intraseasonal oscillation (BSISO) becomes the dominant mode of intraseasonal variability, these relationships are reversed. Zonal differences in UTLS stability anomalies are consistent with amplitude changes of eastward-propagating MJO events across the MC during boreal winter, and meridional stability differences are consistent with amplitude changes of northeastward-propagating BSISO events during boreal summer. Results remain consistent when stratifying by neutral ENSO phase.
    Description: The authors are grateful for the funding provided by the Office of Naval Research Propagation of Intra-Seasonal Tropical Oscillations (ONR PISTON) Award N0001416WX01752 and the USNA Trident Scholar program. The authors also appreciate the helpful comments of the two external reviewers.
    Description: 2019-07-07
    Keywords: Maritime Continent ; Madden-Julian oscillation ; Quasibiennial oscillation
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    On serial observation processing in localized ensemble Kalman filters (2015)
    American Meteorological Society
    In:  EPIC3Monthly Weather Review, American Meteorological Society, 143, pp. 1554-1567, ISSN: 0027-0644
    Details
    Publication Date: 2019-07-17
    Description: Ensemble square root filters can either assimilate all observations that are available at a given time at once, or assimilate the observations in batches or one at a time. For large-scale models, the filters are typically applied with a localized analysis step. This study demonstrates that the interaction of serial observation processing and localization can destabilize the analysis process and examines under which conditions the instability becomes significant. The instability results from a repeated inconsistent update of the state error covariance matrix that is caused by the localization. The inconsistency is present in all ensemble Kalman filters, except the classical ensemble Kalman filter with perturbed observations. With serial observation processing, its effect is small in cases when the assimilation changes the ensemble of model states only slightly. However, when the assimilation has a strong effect on the state estimates, the interaction of localization and serial observation processing can significantly deteriorate the filter performance. In realistic large-scale applications, when the assimilation changes the states only slightly and when the distribution of the observations is irregular and changing over time, the instability is likely not significant.
    Repository Name: EPIC Alfred Wegener Institut
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    Ozonesonde Quality Assurance: The JOSIE–SHADOZ (2017) Experience (2019)
    American Meteorological Society
    In:  EPIC3Bulletin of the American Meteorological Society, American Meteorological Society, 100(1), pp. 155-171, ISSN: 0003-0007
    Details
    Publication Date: 2019-10-29
    Description: The ozonesonde is a small balloon-borne instrument that is attached to a standard radiosonde to measure profiles of ozone from the surface to 35 km with ∼100-m vertical resolution. Ozonesonde data constitute a mainstay of satellite calibration and are used for climatologies and analysis of trends, especially in the lower stratosphere where satellites are most uncertain. The electrochemical concentration cell (ECC) ozonesonde has been deployed at ∼100 stations worldwide since the 1960s, with changes over time in manufacture and procedures, including details of the cell chemical solution and data processing. As a consequence, there are biases among different stations and discontinuities in profile time series from individual site records. For 22 years the Jülich (Germany) Ozonesonde Intercomparison Experiment (JOSIE) has periodically tested ozonesondes in a simulation chamber designated the World Calibration Centre for Ozonesondes (WCCOS) by WMO. During October–November 2017 a JOSIE campaign evaluated the sondes and procedures used in Southern Hemisphere Additional Ozonesondes (SHADOZ), a 14-station sonde network operating in the tropics and subtropics. A distinctive feature of the 2017 JOSIE was that the tests were conducted by operators from eight SHADOZ stations. Experimental protocols for the SHADOZ sonde configurations, which represent most of those in use today, are described, along with preliminary results. SHADOZ stations that follow WMO-recommended protocols record total ozone within 3% of the JOSIE reference instrument. These results and prior JOSIEs demonstrate that regular testing is essential to maintain best practices in ozonesonde operations and to ensure high-quality data for the satellite and ozone assessment communities.
    Repository Name: EPIC Alfred Wegener Institut
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    Multi-use of the sea: A wide array of opportunities from site-specific cases across Europe (2019)
    Public Library of Science
    In:  EPIC3PLOS ONE, Public Library of Science, 14(4), pp. 1-36
    Details
    Publication Date: 2020-02-27
    Description: The concept of multi-use of the sea has gained popularity in recent years as a result of ocean space (coastal areas and regions with relatively small sea space in particular) becoming increasingly crowded due to the development of the maritime economy. Competing claims for space can be a source of conflict, however this may also lead to mutual benefits for different users when sustainable combinations are sought. Despite increasing European-wide efforts, on-the-ground knowledge and practice of multi-use are still limited. Therefore, with the aim of investigating opportunities for multi-use development in the European seas, 10 case studies were selected, involving different site-specific contexts. This study analyses the characteristics and development potential for ocean multi-use, integrating results from desk analysis and stakeholder perceptions from different sectors in each of the case study locations. Similarities and differences between various combinations of sea uses are also identified. The results show a high heterogeneity of multi-use opportunities between case studies, with a range of combinations identified. The investigated combinations of maritime uses share an overall balance between factors promoting (drivers) and hindering (barriers) multi-use development. Based on stakeholder opinions, expected benefits (added values) of multi-use implementation outweigh potential negative impacts. Management actions are also proposed to further exploit multi-use potential at a local, regional (sub-national) and national levels.
    Repository Name: EPIC Alfred Wegener Institut
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  • 153
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    Prediction of Indian summer monsoon onset using dynamical sub-seasonal forecasts: effects of realistic initialization of the atmosphere (2015)
    American Meteorological Society
    Details
    Publication Date: 2021-11-09
    Description: Ensembles of retrospective 2-month dynamical forecasts initiated on 1May are used to predict the onset of the Indian summer monsoon (ISM) for the period 1989–2005. The subseasonal predictions (SSPs) are based on a coupled general circulation model and recently they have been upgraded by the realistic initialization of the atmosphere with initial conditions taken from reanalysis. Two objective large-scale methods based on dynamical circulation and hydrological indices are applied to detect the ISM onset. The SSPs show some skill in forecasting earlier-than-normal ISM onsets, while they have difficulty in predicting late onsets. It is shown that significant contribution to the skill in forecasting early ISM onsets comes from the newly developed initialization of the atmosphere from reanalysis. On one hand, atmospheric initialization produces a better representation of the atmospheric mean state in the initial conditions, leading to a systematically improved monsoon onset sequence. On the other hand, the initialization of the atmosphere allows some skill in forecasting the northward propagating intraseasonal wind and precipitation anomalies over the tropical Indian Ocean. The northward propagating intraseasonal modes trigger the monsoon in some early-onset years. The realistic phase initialization of these modes improves the forecasts of the associated earlier-than-normal monsoon onsets. The prediction of late onsets is not noticeably improved by the initialization of the atmosphere. It is suggested that late onsets of the monsoon are too far away from the start date of the forecasts to conserve enough memory of the intraseasonal oscillation (ISO) anomalies and of the improved representation of the mean state in the initial conditions.
    Description: Published
    Description: 778-793
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: indian summer monsoon ; onset ; seasonal predictions ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate ; 01. Atmosphere::01.01. Atmosphere::01.01.04. Processes and Dynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Reef-fidelity and migration of tiger sharks, Galeocerdo cuvier, across the Coral Sea (2015)
    Public Library of Science
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e83249, doi:10.1371/journal.pone.0083249.
    Description: Knowledge of the habitat use and migration patterns of large sharks is important for assessing the effectiveness of large predator Marine Protected Areas (MPAs), vulnerability to fisheries and environmental influences, and management of shark–human interactions. Here we compare movement, reef-fidelity, and ocean migration for tiger sharks, Galeocerdo cuvier, across the Coral Sea, with an emphasis on New Caledonia. Thirty-three tiger sharks (1.54 to 3.9 m total length) were tagged with passive acoustic transmitters and their localised movements monitored on receiver arrays in New Caledonia, the Chesterfield and Lord Howe Islands in the Coral Sea, and the east coast of Queensland, Australia. Satellite tags were also used to determine habitat use and movements among habitats across the Coral Sea. Sub-adults and one male adult tiger shark displayed year-round residency in the Chesterfields with two females tagged in the Chesterfields and detected on the Great Barrier Reef, Australia, after 591 and 842 days respectively. In coastal barrier reefs, tiger sharks were transient at acoustic arrays and each individual demonstrated a unique pattern of occurrence. From 2009 to 2013, fourteen sharks with satellite and acoustic tags undertook wide-ranging movements up to 1114 km across the Coral Sea with eight detected back on acoustic arrays up to 405 days after being tagged. Tiger sharks dove 1136 m and utilised three-dimensional activity spaces averaged at 2360 km3. The Chesterfield Islands appear to be important habitat for sub-adults and adult male tiger sharks. Management strategies need to consider the wide-ranging movements of large (sub-adult and adult) male and female tiger sharks at the individual level, whereas fidelity to specific coastal reefs may be consistent across groups of individuals. Coastal barrier reef MPAs, however, only afford brief protection for large tiger sharks, therefore determining the importance of other oceanic Coral Sea reefs should be a priority for future research.
    Description: Funding was provided by the the Agence Francaise de Développement (http://www.afd.fr), French Pacific Fund, the CRISP program (www.crisponline.info) and QLD Fisheries.
    Repository Name: Woods Hole Open Access Server
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    A hybrid particle–ensemble Kalman filter for Lagrangian data assimilation (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 143 (2015): 195–211, doi:10.1175/MWR-D-14-00051.1.
    Description: Lagrangian measurements from passive ocean instruments provide a useful source of data for estimating and forecasting the ocean’s state (velocity field, salinity field, etc.). However, trajectories from these instruments are often highly nonlinear, leading to difficulties with widely used data assimilation algorithms such as the ensemble Kalman filter (EnKF). Additionally, the velocity field is often modeled as a high-dimensional variable, which precludes the use of more accurate methods such as the particle filter (PF). Here, a hybrid particle–ensemble Kalman filter is developed that applies the EnKF update to the potentially high-dimensional velocity variables, and the PF update to the relatively low-dimensional, highly nonlinear drifter position variable. This algorithm is tested with twin experiments on the linear shallow water equations. In experiments with infrequent observations, the hybrid filter consistently outperformed the EnKF, both by better capturing the Bayesian posterior and by better tracking the truth.
    Description: The work of Apte benefited from the support of the AIRBUS Group Corporate Foundation Chair in Mathematics of Complex Systems established in ICTS-TIFR. Spiller would like to acknowledge support by NSF Grant DMS-1228265 and ONR Grant N00014-11-1-0087. Sandstede gratefully acknowledges support by the NSF through Grant DMS-0907904. Slivinski was supported by the NSF through Grants DMS-0907904 and DMS-1148284.
    Description: 2015-07-01
    Keywords: Bayesian methods ; Filtering techniques ; Kalman filters ; Statistical techniques ; Data assimilation
    Repository Name: Woods Hole Open Access Server
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    Corrigendum (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 31 (2014): 2871, doi:10.1175/JTECH-D-14-00187.1.
    Repository Name: Woods Hole Open Access Server
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    Chemical composition and potential environmental impacts of water-soluble polar crude oil components inferred from ESI FT-ICR MS (2015)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 10 (2015): e0136376, doi:10.1371/journal.pone.0136376.
    Description: Polar petroleum components enter marine environments through oil spills and natural seepages each year. Lately, they are receiving increased attention due to their potential toxicity to marine organisms and persistence in the environment. We conducted a laboratory experiment and employed state-of-the-art Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) to characterize the polar petroleum components within two operationally-defined seawater fractions: the water-soluble fraction (WSF), which includes only water-soluble molecules, and the water-accommodated fraction (WAF), which includes WSF and microscopic oil droplets. Our results show that compounds with higher heteroatom (N, S, O) to carbon ratios (NSO:C) than the parent oil were selectively partitioned into seawater in both fractions, reflecting the influence of polarity on aqueous solubility. WAF and WSF were compositionally distinct, with unique distributions of compounds across a range of hydrophobicity. These compositional differences will likely result in disparate impacts on environmental health and organismal toxicity, and thus highlight the need to distinguish between these often-interchangeable terminologies in toxicology studies. We use an empirical model to estimate hydrophobicity character for individual molecules within these complex mixtures and provide an estimate of the potential environmental impacts of different crude oil components.
    Description: This study is funded by the Gulf of Mexico Research Initiative (GOMRI) Project # 161684 to Dr. Elizabeth B. Kujawinski.
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    An unexpected diversity of photoreceptor classes in the longfin squid, Doryteuthis pealeii (2015)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 10 (2015): e0135381, doi:10.1371/journal.pone.0135381.
    Description: Cephalopods are famous for their ability to change color and pattern rapidly for signaling and camouflage. They have keen eyes and remarkable vision, made possible by photoreceptors in their retinas. External to the eyes, photoreceptors also exist in parolfactory vesicles and some light organs, where they function using a rhodopsin protein that is identical to that expressed in the retina. Furthermore, dermal chromatophore organs contain rhodopsin and other components of phototransduction (including retinochrome, a photoisomerase first found in the retina), suggesting that they are photoreceptive. In this study, we used a modified whole-mount immunohistochemical technique to explore rhodopsin and retinochrome expression in a number of tissues and organs in the longfin squid, Doryteuthis pealeii. We found that fin central muscles, hair cells (epithelial primary sensory neurons), arm axial ganglia, and sucker peduncle nerves all express rhodopsin and retinochrome proteins. Our findings indicate that these animals possess an unexpected diversity of extraocular photoreceptors and suggest that extraocular photoreception using visual opsins and visual phototransduction machinery is far more widespread throughout cephalopod tissues than previously recognized.
    Description: This research was supported by the Office of Naval Research Basic Research Challenge grant number N00014-10-0989 to TWC and RTH and a Biotechnology and Biological Sciences Research Council (BBSRC) David Phillips Fellowship BB/L024667/1 to TJW. The authors gratefully acknowledge support from the Air Force Office of Scientific Research via grants numbered FA9550-09-0346 to RTH. and FA9550-12-1-0321 to TWC.
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    Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis Lung Disease (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0149998, doi:10.1371/journal.pone.0149998.
    Description: Individuals with cystic fibrosis (CF) often acquire chronic lung infections that lead to irreversible damage. We sought to examine regional variation in the microbial communities in the lungs of individuals with mild-to-moderate CF lung disease, to examine the relationship between the local microbiota and local damage, and to determine the relationships between microbiota in samples taken directly from the lung and the microbiota in spontaneously expectorated sputum. In this initial study, nine stable, adult CF patients with an FEV1〉50% underwent regional sampling of different lobes of the right lung by bronchoalveolar lavage (BAL) and protected brush (PB) sampling of mucus plugs. Sputum samples were obtained from six of the nine subjects immediately prior to the procedure. Microbial community analysis was performed on DNA extracted from these samples and the extent of damage in each lobe was quantified from a recent CT scan. The extent of damage observed in regions of the right lung did not correlate with specific microbial genera, levels of community diversity or composition, or bacterial genome copies per ml of BAL fluid. In all subjects, BAL fluid from different regions of the lung contained similar microbial communities. In eight out of nine subjects, PB samples from different regions of the lung were also similar in microbial community composition, and were similar to microbial communities in BAL fluid from the same lobe. Microbial communities in PB samples were more diverse than those in BAL samples, suggesting enrichment of some taxa in mucus plugs. To our knowledge, this study is the first to examine the microbiota in different regions of the CF lung in clinically stable individuals with mild-to-moderate CF-related lung disease.
    Description: Support from the Cystic Fibrosis Foundation Research Development Program (STANTO07R0) as a pilot grant to DAH and AA. Research reported in this publication was also supported by grants from the National Institutes of Health to DAH (R01 AI091702 to DAH) and the American Asthma Foundation Scholars Award and CFFT-ASHARE15A0 and R01HL122372 to AA and R01 HL074175 (BAS). The Dartmouth Lung Biology Center and CF Translational Research Core was supported by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant number P30GM106394 and by the CFF RDP (CFRDP STANTO11R0).
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    Abundance and distribution of sperm whales in the Canary Islands : can sperm whales in the archipelago sustain the current level of ship-strike mortalities? (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0150660, doi:10.1371/journal.pone.0150660.
    Description: Sperm whales are present in the Canary Islands year-round, suggesting that the archipelago is an important area for this species in the North Atlantic. However, the area experiences one of the highest reported rates of sperm whale ship-strike in the world. Here we investigate if the number of sperm whales found in the archipelago can sustain the current rate of ship-strike mortality. The results of this study may also have implications for offshore areas where concentrations of sperm whales may coincide with high densities of ship traffic, but where ship-strikes may be undocumented. The absolute abundance of sperm whales in an area of 52933 km2, covering the territorial waters of the Canary Islands, was estimated from 2668 km of acoustic line-transect survey using Distance sampling analysis. Data on sperm whale diving and acoustic behaviour, obtained from bio-logging, were used to calculate g(0) = 0.92, this is less than one because of occasional extended periods when whales do not echolocate. This resulted in an absolute abundance estimate of 224 sperm whales (95% log-normal CI 120–418) within the survey area. The recruitment capability of this number of whales, some 2.5 whales per year, is likely to be exceeded by the current ship-strike mortality rate. Furthermore, we found areas of higher whale density within the archipelago, many coincident with those previously described, suggesting that these are important habitats for females and immature animals inhabiting the archipelago. Some of these areas are crossed by active shipping lanes increasing the risk of ship-strikes. Given the philopatry in female sperm whales, replacement of impacted whales might be limited. Therefore, the application of mitigation measures to reduce the ship-strike mortality rate seems essential for the conservation of sperm whales in the Canary Islands.
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  • 161
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    Continental shelf baroclinic instability. Part I : relaxation from upwelling or downwelling (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 551-568, doi:10.1175/JPO-D-15-0047.1.
    Description: There exists a good deal of indirect evidence, from several locations around the world, that there is a substantial eddy field over continental shelves. These eddies appear to have typical swirl velocities of a few centimeters per second and have horizontal scales of perhaps 5–10 km. These eddies are weak compared to typical, wind-driven, alongshore flows but often seem to dominate middepth cross-shelf flows. The idea that motivates the present contribution is that the alongshore wind stress ultimately energizes these eddies by means of baroclinic instabilities, even in cases where obvious intense fronts do not exist. The proposed sequence is that alongshore winds over a stratified ocean cause upwelling or downwelling, and the resulting horizontal density gradients are strong enough to fuel baroclinic instabilities of the requisite energy levels. This idea is explored here by means of a sequence of idealized primitive equation numerical model studies, each driven by a modest, nearly steady, alongshore wind stress applied for about 5–10 days. Different runs vary wind forcing, stratification, bottom slope, bottom friction, and Coriolis parameter. All runs, both upwelling and downwelling, are found to be baroclinically unstable and to have scales compatible with the underlying hypothesis. The model results, combined with physically based scalings, show that eddy kinetic energy generally increases with bottom slope, stratification, wind impulse (time integral of the wind stress), and inverse Coriolis parameter. The dominant length scale of the eddies is found to increase with increasing eddy kinetic energy and to decrease with Coriolis parameter.
    Description: This work was supported by the Woods Hole Oceanographic Institution and by the National Science Foundation, Physical Oceanography section through Grant OCE-1433953.
    Description: 2016-06-09
    Keywords: Geographic location/entity ; Continental shelf/slope ; Variability ; Oceanic variability
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  • 162
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    Enhanced diapycnal diffusivity in intrusive regions of the Drake Passage (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1309-1321, doi:10.1175/JPO-D-15-0068.1.
    Description: Direct measurements of oceanic turbulent parameters were taken upstream of and across Drake Passage, in the region of the Subantarctic and Polar Fronts. Values of turbulent kinetic energy dissipation rate ε estimated by microstructure are up to two orders of magnitude lower than previously published estimates in the upper 1000 m. Turbulence levels in Drake Passage are systematically higher than values upstream, regardless of season. The dissipation of thermal variance χ is enhanced at middepth throughout the surveys, with the highest values found in northern Drake Passage, where water mass variability is the most pronounced. Using the density ratio, evidence for double-diffusive instability is presented. Subject to double-diffusive physics, the estimates of diffusivity using the Osborn–Cox method are larger than ensemble statistics based on ε and the buoyancy frequency.
    Description: This work was supported by grants from the U.S. National Science Foundation.
    Description: 2016-10-05
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Diapycnal mixing ; Mixing ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Fronts ; Observational techniques and algorithms ; Profilers, oceanic
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    Eddy–wind interaction in the California Current System : dynamics and impacts (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 439-459, doi:10.1175/JPO-D-15-0086.1.
    Description: The summertime California Current System (CCS) is characterized by energetic mesoscale eddies, whose sea surface temperature (SST) and surface current can significantly modify the wind stress and Ekman pumping. Relative importance of the eddy–wind interactions via SST and surface current in the CCS is examined using a high-resolution (7 km) regional coupled model with a novel coupling approach to isolate the small-scale air–sea coupling by SST and surface current. Results show that when the eddy-induced surface current is allowed to modify the wind stress, the spatially averaged surface eddy kinetic energy (EKE) is reduced by 42%, and this is primarily due to enhanced surface eddy drag and reduced wind energy transfer. In contrast, the eddy-induced SST–wind coupling has no significant impact on the EKE. Furthermore, eddy-induced SST and surface current modify the Ekman pumping via their crosswind SST gradient and surface vorticity gradient, respectively. The resultant magnitudes of the Ekman pumping velocity are comparable, but the implied feedback effects on the eddy statistics are different. The surface current-induced Ekman pumping mainly attenuates the amplitude of cyclonic and anticyclonic eddies, acting to reduce the eddy activity, while the SST-induced Ekman pumping primarily affects the propagation. Time mean–rectified change in SST is determined by the altered offshore temperature advection by the mean and eddy currents, but the magnitude of the mean SST change is greater with the eddy-induced current effect. The demonstrated remarkably strong dynamical response in the CCS system to the eddy-induced current–wind coupling indicates that eddy-induced current should play an important role in the regional coupled ocean–atmosphere system.
    Description: We thank NSF for support under GrantsOCE-0960770,OCE-1419235, andOCE-1419306. HS is grateful for the WHOI internal support from the Andrew W. Mellon Foundation Awards for Innovative Research and the additional support from the ONR We thank NSF for support under GrantsOCE-0960770,OCE-1419235, andOCE-1419306. HS is grateful for the WHOI internal support from the Andrew W. Mellon Foundation Awards for Innovative Research and the additional support from the ONR
    Description: 2016-05-30
    Keywords: Atm/Ocean Structure/ Phenomena ; Atmosphere-ocean interaction ; Ekman pumping ; Models and modeling ; Ocean models ; Regional models
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    Stratified turbulence and mixing efficiency in a salt wedge estuary (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1769-1783, doi:10.1175/JPO-D-15-0193.1.
    Description: High-resolution observations of velocity, salinity, and turbulence quantities were collected in a salt wedge estuary to quantify the efficiency of stratified mixing in a high-energy environment. During the ebb tide, a midwater column layer of strong shear and stratification developed, exhibiting near-critical gradient Richardson numbers and turbulent kinetic energy (TKE) dissipation rates greater than 10−4 m2 s−3, based on inertial subrange spectra. Collocated estimates of scalar variance dissipation from microconductivity sensors were used to estimate buoyancy flux and the flux Richardson number Rif. The majority of the samples were outside the boundary layer, based on the ratio of Ozmidov and boundary length scales, and had a mean Rif = 0.23 ± 0.01 (dissipation flux coefficient Γ = 0.30 ± 0.02) and a median gradient Richardson number Rig = 0.25. The boundary-influenced subset of the data had decreased efficiency, with Rif = 0.17 ± 0.02 (Γ = 0.20 ± 0.03) and median Rig = 0.16. The relationship between Rif and Rig was consistent with a turbulent Prandtl number of 1. Acoustic backscatter imagery revealed coherent braids in the mixing layer during the early ebb and a transition to more homogeneous turbulence in the midebb. A temporal trend in efficiency was also visible, with higher efficiency in the early ebb and lower efficiency in the late ebb when the bottom boundary layer had greater influence on the flow. These findings show that mixing efficiency of turbulence in a continuously forced, energetic, free shear layer can be significantly greater than the broadly cited upper bound from Osborn of 0.15–0.17.
    Description: Holleman was supported by the Devonshire Scholars program. The field study and the coauthors’ contributions were supported by NSF Grant OCE 0926427.
    Description: 2016-11-24
    Keywords: Circulation/ Dynamics ; Mixing ; Shear structure/flows ; Turbulence ; Observational techniques and algorithms ; Ship observations
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    Comparison of direct covariance flux measurements from an offshore tower and a buoy (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 873-890, doi:10.1175/JTECH-D-15-0109.1.
    Description: Direct covariance flux (DCF) measurements taken from floating platforms are contaminated by wave-induced platform motions that need to be removed before computation of the turbulent fluxes. Several correction algorithms have been developed and successfully applied in earlier studies from research vessels and, most recently, by the use of moored buoys. The validation of those correction algorithms has so far been limited to short-duration comparisons against other floating platforms. Although these comparisons show in general a good agreement, there is still a lack of a rigorous validation of the method, required to understand the strengths and weaknesses of the existing motion-correction algorithms. This paper attempts to provide such a validation by a comparison of flux estimates from two DCF systems, one mounted on a moored buoy and one on the Air–Sea Interaction Tower (ASIT) at the Martha’s Vineyard Coastal Observatory, Massachusetts. The ASIT was specifically designed to minimize flow distortion over a wide range of wind directions from the open ocean for flux measurements. The flow measurements from the buoy system are corrected for wave-induced platform motions before computation of the turbulent heat and momentum fluxes. Flux estimates and cospectra of the corrected buoy data are found to be in very good agreement with those obtained from the ASIT. The comparison is also used to optimize the filter constants used in the motion-correction algorithm. The quantitative agreement between the buoy data and the ASIT demonstrates that the DCF method is applicable for turbulence measurements from small moving platforms, such as buoys.
    Description: This work was funded by the National Science Foundation Grant OCE04-24536 as part of the CLIVAR Mode Water Dynamic Experiment (CLIMODE).
    Keywords: Circulation/ Dynamics ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Boundary layer ; Physical Meteorology and Climatology ; Air-sea interaction ; Observational techniques and algorithms ; Buoy observations ; Quality assurance/control
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    Cisplatin resistant spheroids model clinically relevant survival mechanisms in ovarian tumors (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0151089, doi: 10.1371/journal.pone.0151089 .
    Description: The majority of ovarian tumors eventually recur in a drug resistant form. Using cisplatin sensitive and resistant cell lines assembled into 3D spheroids we profiled gene expression and identified candidate mechanisms and biological pathways associated with cisplatin resistance. OVCAR-8 human ovarian carcinoma cells were exposed to sub-lethal concentrations of cisplatin to create a matched cisplatin-resistant cell line, OVCAR-8R. Genome-wide gene expression profiling of sensitive and resistant ovarian cancer spheroids identified 3,331 significantly differentially expressed probesets coding for 3,139 distinct protein-coding genes (Fc 〉2, FDR 〈 0.05) (S2 Table). Despite significant expression changes in some transporters including MDR1, cisplatin resistance was not associated with differences in intracellular cisplatin concentration. Cisplatin resistant cells were significantly enriched for a mesenchymal gene expression signature. OVCAR-8R resistance derived gene sets were significantly more biased to patients with shorter survival. From the most differentially expressed genes, we derived a 17-gene expression signature that identifies ovarian cancer patients with shorter overall survival in three independent datasets. We propose that the use of cisplatin resistant cell lines in 3D spheroid models is a viable approach to gain insight into resistance mechanisms relevant to ovarian tumors in patients. Our data support the emerging concept that ovarian cancers can acquire drug resistance through an epithelial-to-mesenchymal transition.
    Description: This work was funded by the NIH NCRR supplement grant P41 RR001395-27S1 (J.W.H.), NSF DBI-1005378 “REU Site: Biological Discovery in Woods Hole”, faculty startup funds from the Office of Research at Oklahoma State University (W.C.), and the Mary Kay Foundation (A.S.B.).
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    Recent tropical expansion: natural variability or forced response? (2019)
    American Meteorological Society
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    Publication Date: 2023-02-23
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(5) (2019): 1551-1571. doi:10.1175/JCLI-D-18-0444.1.
    Description: Previous studies have documented a poleward shift in the subsiding branches of Earth’s Hadley circulation since 1979 but have disagreed on the causes of these observed changes and the ability of global climate models to capture them. This synthesis paper reexamines a number of contradictory claims in the past literature and finds that the tropical expansion indicated by modern reanalyses is within the bounds of models’ historical simulations for the period 1979–2005. Earlier conclusions that models were underestimating the observed trends relied on defining the Hadley circulation using the mass streamfunction from older reanalyses. The recent observed tropical expansion has similar magnitudes in the annual mean in the Northern Hemisphere (NH) and Southern Hemisphere (SH), but models suggest that the factors driving the expansion differ between the hemispheres. In the SH, increasing greenhouse gases (GHGs) and stratospheric ozone depletion contributed to tropical expansion over the late twentieth century, and if GHGs continue increasing, the SH tropical edge is projected to shift further poleward over the twenty-first century, even as stratospheric ozone concentrations recover. In the NH, the contribution of GHGs to tropical expansion is much smaller and will remain difficult to detect in a background of large natural variability, even by the end of the twenty-first century. To explain similar recent tropical expansion rates in the two hemispheres, natural variability must be taken into account. Recent coupled atmosphere–ocean variability, including the Pacific decadal oscillation, has contributed to tropical expansion. However, in models forced with observed sea surface temperatures, tropical expansion rates still vary widely because of internal atmospheric variability.
    Description: We thank Ori Adam, Nick Davis, Isaac Held, Tim Merlis, Lorenzo Polvani, and one anonymous reviewer for helpful comments and suggestions. We thank U.S. CLIVAR and the International Space Science Institute (ISSI) for funding working groups that stimulated this project. We thank all members of the working groups for helpful discussions, and the U.S. CLIVAR and ISSI offices and their sponsoring agencies (NASA,NOAA,NSF,DOE, ESA, Swiss Confederation, Swiss Academy of Sciences, and University of Bern) for supporting these groups and activities.We acknowledge WCRP’sWorking Group on CoupledModelling, which is responsible for CMIP, and we thank the climate modeling groups (Table 2) for producing and making available their model output. For CMIP, the U.S. DOE PCMDI provides coordinating support and led development of software infrastructure in partnership with the Global Organization for Earth System Science Portals.
    Description: 2019-08-06
    Keywords: Hadley circulation ; Climate models ; Reanalysis data ; Multidecadal variability ; Pacific decadal oscillation ; Trends
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    Frontogenesis and variability in Denmark Strait and its influence on overflow water (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1889-1904, doi:10.1175/JPO-D-19-0053.1.
    Description: A high-resolution numerical model, together with in situ and satellite observations, is used to explore the nature and dynamics of the dominant high-frequency (from one day to one week) variability in Denmark Strait. Mooring measurements in the center of the strait reveal that warm water “flooding events” occur, whereby the North Icelandic Irminger Current (NIIC) propagates offshore and advects subtropical-origin water northward through the deepest part of the sill. Two other types of mesoscale processes in Denmark Strait have been described previously in the literature, known as “boluses” and “pulses,” associated with a raising and lowering of the overflow water interface. Our measurements reveal that flooding events occur in conjunction with especially pronounced pulses. The model indicates that the NIIC hydrographic front is maintained by a balance between frontogenesis by the large-scale flow and frontolysis by baroclinic instability. Specifically, the temperature and salinity tendency equations demonstrate that the eddies act to relax the front, while the mean flow acts to sharpen it. Furthermore, the model reveals that the two dense water processes—boluses and pulses (and hence flooding events)—are dynamically related to each other and tied to the meandering of the hydrographic front in the strait. Our study thus provides a general framework for interpreting the short-time-scale variability of Denmark Strait Overflow Water entering the Irminger Sea.
    Description: MAS was supported by the National Science Foundation (NSF) under Grants OCE-1558742 and OCE-1534618. RSP, PL, and DM were supported by NSF under Grants OCE-1558742 and OCE-1259618. WJvA was supported by the Helmholtz Infrastructure Initiative FRAM. TWNH and MA were supported by NSF under Grants OCE-1633124 and OCE-118123.
    Description: 2020-07-01
    Keywords: Baroclinic flows ; Frontogenesis/frontolysis ; Meridional overturning circulation ; Ocean dynamics ; Topographic effects
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    Multi-method assessment of whale shark (Rhincodon typus) residency, distribution, and dispersal behavior at an aggregation site in the Red Sea (2019)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cochran, J. E. M., Braun, C. D., Cagua, E. F., Campbell, M. F., Hardenstine, R. S., Kattan, A., Priest, M. A., Sinclair-Taylor, T. H., Skomal, G. B., Sultan, S., Sun, L., Thorrold, S. R., & Berumen, M. L. Multi-method assessment of whale shark (Rhincodon typus) residency, distribution, and dispersal behavior at an aggregation site in the Red Sea. Plos One, 14(9), (2019): e0222285, doi:10.1371/journal.pone.0222285.
    Description: Whale sharks (Rhincodon typus) are typically dispersed throughout their circumtropical range, but the species is also known to aggregate in specific coastal areas. Accurate site descriptions associated with these aggregations are essential for the conservation of R. typus, an Endangered species. Although aggregations have become valuable hubs for research, most site descriptions rely heavily on sightings data. In the present study, visual census, passive acoustic monitoring, and long range satellite telemetry were combined to track the movements of R. typus from Shib Habil, a reef-associated aggregation site in the Red Sea. An array of 63 receiver stations was used to record the presence of 84 acoustically tagged sharks (35 females, 37 males, 12 undetermined) from April 2010 to May 2016. Over the same period, identification photos were taken for 76 of these tagged individuals and 38 were fitted with satellite transmitters. In total of 37,461 acoustic detections, 210 visual encounters, and 33 satellite tracks were analyzed to describe the sharks’ movement ecology. The results demonstrate that the aggregation is seasonal, mostly concentrated on the exposed side of Shib Habil, and seems to attract sharks of both sexes in roughly equal numbers. The combined methodologies also tracked 15 interannual homing-migrations, demonstrating that many sharks leave the area before returning in later years. When compared to acoustic studies from other aggregations, these results demonstrate that R. typus exhibits diverse, site-specific ecologies across its range. Sightings-independent data from acoustic telemetry and other sources are an effective means of validating more common visual surveys.
    Description: Financial support was provided in part by KAUST baseline research funds (to MLB), KAUST award nos. USA00002 and KSA 00011 (to SRT), and the U.S. National Science Foundation (OCE 0825148 to SRT and GBS).
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    Sediment transport model including short-lived radioisotopes: Model description and idealized test cases (2019)
    American Meteorological Society
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    Publication Date: 2022-10-27
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Marine Science and Engineering 6(4), (2018): 144. doi:10.3390/jmse6040144.
    Description: Geochronologies derived from sediment cores in coastal locations are often used to infer event bed characteristics such as deposit thicknesses and accumulation rates. Such studies commonly use naturally occurring, short-lived radioisotopes, such as Beryllium-7 (7Be) and Thorium-234 (234Th), to study depositional and post-depositional processes. These radioisotope activities, however, are not generally represented in sediment transport models that characterize coastal flood and storm deposition with grain size patterns and deposit thicknesses. We modified the Community Sediment Transport Modeling System (CSTMS) to account for reactive tracers and used this capability to represent the behavior of these short-lived radioisotopes on the sediment bed. This paper describes the model and presents results from a set of idealized, one-dimensional (vertical) test cases. The model configuration represented fluvial deposition followed by periods of episodic storm resuspension. Sensitivity tests explored the influence on seabed radioisotope profiles by the intensities of bioturbation and wave resuspension and the thickness of fluvial deposits. The intensity of biodiffusion affected the persistence of fluvial event beds as evidenced by 7Be. Both resuspension and biodiffusion increased the modeled seabed inventory of 234Th. A thick fluvial deposit increased the seabed inventory of 7Be and 234Th but mixing over time greatly reduced the difference in inventory of 234Th in fluvial deposits of different thicknesses.
    Description: The Bureau of Ocean Energy Management (BOEM) provided funding for Birchler, Harris, and Kniskern. During his M.S. program Birchler received additional funds from VIMS’ Office of Academic Studies. This work was partially supported by the U.S. Geological Survey, Coastal and Marine Geology Program.
    Keywords: Numerical model ; Sediment transport ; Marine ; Short-lived radioisotopes
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  • 171
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    Moored observations of the surface meteorology and air-sea fluxes in the Northern Bay of Bengal in 2015 (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(2), (2019): 549-573. doi: 10.1175/JCLI-D-18-0413.1.
    Description: Time series of surface meteorology and air–sea fluxes from the northern Bay of Bengal are analyzed, quantifying annual and seasonal means, variability, and the potential for surface fluxes to contribute significantly to variability in surface temperature and salinity. Strong signals were associated with solar insolation and its modulation by cloud cover, and, in the 5- to 50-day range, with intraseasonal oscillations (ISOs). The northeast (NE) monsoon (DJF) was typically cloud free, with strong latent heat loss and several moderate wind events, and had the only seasonal mean ocean heat loss. The spring intermonsoon (MAM) was cloud free and had light winds and the strongest ocean heating. Strong ISOs and Tropical Cyclone Komen were seen in the southwest (SW) monsoon (JJA), when 65% of the 2.2-m total rain fell, and oceanic mean heating was small. The fall intermonsoon (SON) initially had moderate convective systems and mean ocean heating, with a transition to drier winds and mean ocean heat loss in the last month. Observed surface freshwater flux applied to a layer of the observed thickness produced drops in salinity with timing and magnitude similar to the initial drops in salinity in the summer monsoon, but did not reproduce the salinity variability of the fall intermonsoon. Observed surface heat flux has the potential to cause the temperature trends of the different seasons, but uncertainty in how shortwave radiation is absorbed in the upper ocean limits quantifying the role of surface forcing in the evolution of mixed layer temperature.
    Description: The deployment of the Woods Hole Oceanographic Institution (WHOI) mooring and RW and JTF were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453. DS acknowledges support from the Ministry of Earth Sciences under India’s National Monsoon Mission. HS acknowledges support from the Office of Naval Research Grants N00014-13-1-0453 and N00014-17-12398. The deployment of the WHOI mooring was done by RV Sagar Nidhi and the recovery by RV Sagar Kanya; the help of the crew and science parties is gratefully acknowledged as is the ongoing support at NIOT in Chennai and by other colleagues in India of this mooring work. The work of the staff of the WHOI Upper Ocean Process Group in the design, building, deployment, and recovery of the mooring and in processing the data is gratefully acknowledged. The software for the wavelet analysis was provided by Torrence and Compo (1998). Feedback on the paper by Dr. Amit Tandon and two anonymous reviewers is gratefully acknowledged. This paper is dedicated to Dr. Frank Bradley.
    Description: 2019-06-28
    Keywords: Atmosphere-ocean interaction ; Monsoons ; Air-sea interaction ; Surface fluxes
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  • 172
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    On material transport by shelfbreak eddies (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography, 49 (2), (2019): 607-630, doi:10.1175/JPO-D-18-0166.1.
    Description: The Lagrangian motion in the eddy field produced from an unstable retrograde jet along the shelf break is studied from idealized numerical experiments with a primitive equation model. The jet is initially in thermal wind balance with a cross-isobath density gradient and is not subjected to any atmospheric forcing. Over the course of the model integration, the jet becomes unstable and produces a quasi-stationary eddy field over a 2-month period. During this period, the cross-slope flow at the shelf break is characterized by along-slope correlation scales of O(10) km and temporal correlation scales of a few days. The relative dispersion of parcels across isobaths is found to increase with time as tb, where 1 〈 b 〈 2. This mixed diffusive–ballistic regime appears to reflect the combined effects of (i) the short length scales of velocity correlation at the shelf break and (ii) the seaward excursion of monopolar and dipolar vortices. Cross-slope dispersion is greater offshore of the front than inshore of the front, as offshore parcels are both subducted onshore below density surfaces and translated offshore with eddies. Nonetheless, the exchange of parcels across the jet remains very limited on the monthly time scale. Particles originating from the bottom experience upward displacements of a few tens of meters and seaward displacements of O(100) km, suggesting that the eddy activity engendered by an unstable along-slope jet provides another mechanism for bottom boundary layer detachment near the shelf edge.
    Description: The author expresses his gratitude to the researchers who contributed to the development and public dissemination of POM [for a list of contributors, see Mellor (2002) and comments in the source code]. Discussions with Kenneth Brink, Hyodae Seo, and Weifeng Zhang have been helpful. Comments provided by Kenneth Brink on a draft are gratefully acknowledged. The criticism from two anonymous reviewers allowed us to better focus the manuscript and to significantly improve its clarity. This work has been supported by Grant OCE-1556400 from the U.S. National Science Foundation.
    Description: 2020-02-18
    Keywords: Dispersion ; Eddies ; Frontogenesis/frontolysis ; Instability ; Lagrangian circulation/transport ; Jets
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  • 173
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    Properties and origins of the anisotropic eddy-induced transport in the North Atlantic (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 778–791, doi:10.1175/JPO-D-14-0164.1.
    Description: This study examines anisotropic transport properties of the eddying North Atlantic flow, using an idealized model of the double-gyre oceanic circulation and altimetry-derived velocities. The material transport by the time-dependent flow (quantified by the eddy diffusivity tensor) varies geographically and is anisotropic, that is, it has a well-defined direction of the maximum transport. One component of the time-dependent flow, zonally elongated large-scale transients, is particularly important for the anisotropy, as it corresponds to primarily zonal material transport and long correlation time scales. The importance of these large-scale zonal transients in the material distribution is further confirmed with simulations of idealized color dye tracers, which has implications for parameterizations of the eddy transport in non-eddy-resolving models.
    Description: IK would like to acknowledge support through the NSF Grant OCE-1154923. IR was supported by the NSF OCE-1154641 and NASA Grant NNX14AH29G.
    Description: 2015-09-01
    Keywords: Circulation/ Dynamics ; Eddies ; Lagrangian circulation/transport ; Mesoscale processes ; Ocean circulation ; Models and modeling ; Tracers
    Repository Name: Woods Hole Open Access Server
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  • 174
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    Internal waves and mixing near the Kerguelen Plateau (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 417-437, doi:10.1175/JPO-D-15-0055.1.
    Description: In the stratified ocean, turbulent mixing is primarily attributed to the breaking of internal waves. As such, internal waves provide a link between large-scale forcing and small-scale mixing. The internal wave field north of the Kerguelen Plateau is characterized using 914 high-resolution hydrographic profiles from novel Electromagnetic Autonomous Profiling Explorer (EM-APEX) floats. Altogether, 46 coherent features are identified in the EM-APEX velocity profiles and interpreted in terms of internal wave kinematics. The large number of internal waves analyzed provides a quantitative framework for characterizing spatial variations in the internal wave field and for resolving generation versus propagation dynamics. Internal waves observed near the Kerguelen Plateau have a mean vertical wavelength of 200 m, a mean horizontal wavelength of 15 km, a mean period of 16 h, and a mean horizontal group velocity of 3 cm s−1. The internal wave characteristics are dependent on regional dynamics, suggesting that different generation mechanisms of internal waves dominate in different dynamical zones. The wave fields in the Subantarctic/Subtropical Front and the Polar Front Zone are influenced by the local small-scale topography and flow strength. The eddy-wave field is influenced by the large-scale flow structure, while the internal wave field in the Subantarctic Zone is controlled by atmospheric forcing. More importantly, the local generation of internal waves not only drives large-scale dissipation in the frontal region but also downstream from the plateau. Some internal waves in the frontal region are advected away from the plateau, contributing to mixing and stratification budgets elsewhere.
    Description: A.M. was supported by the joint CSIRO-University of Tasmania Quantitative Marine Science (QMS) program and the 2009 CSIRO Wealth from Ocean Flagship Collaborative Fund. K.L.P.’s salary support was provided by Woods Hole Oceanographic Institution bridge support funds. B.M.S. was supported by the Australian Climate Change Science Program.
    Description: 2016-06-07
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Internal waves ; Mixing ; Wave properties ; Observational techniques and algorithms ; In situ oceanic observations ; Profilers, oceanic
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    Continental shelf baroclinic instability. Part II : oscillating wind forcing (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 569-582, doi:10.1175/JPO-D-15-0048.1.
    Description: Continental shelf baroclinic instability energized by fluctuating alongshore winds is treated using idealized primitive equation numerical model experiments. A spatially uniform alongshore wind, sinusoidal in time, alternately drives upwelling and downwelling and so creates highly variable, but slowly increasing, available potential energy. For all of the 30 model runs, conducted with a wide range of parameters (varying Coriolis parameter, initial stratification, bottom friction, forcing period, wind strength, and bottom slope), a baroclinic instability and subsequent eddy field develop. Model results and scalings show that the eddy kinetic energy increases with wind amplitude, forcing period, stratification, and bottom slope. The dominant alongshore length scale of the eddy field is essentially an internal Rossby radius of deformation. The resulting depth-averaged alongshore flow field is dominated by the large-scale, periodic wind forcing, while the cross-shelf flow field is dominated by the eddy variability. The result is that correlation length scales for alongshore flow are far greater than those for cross-shelf velocity. This scale discrepancy is qualitatively consistent with midshelf observations by Kundu and Allen, among others.
    Description: This work was funded by the Woods Hole Oceanographic Institution and by the National Science Foundation, Physical Oceanography section through Grant OCE-1433953.
    Description: 2016-06-09
    Keywords: Geographic location/entity ; Continental shelf/slope ; Variability ; Oceanic variability
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    The Arctic Ocean spices up (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1277-1284, doi:10.1175/JPO-D-16-0027.1.
    Description: The contemporary Arctic Ocean differs markedly from midlatitude, ice-free, and relatively warm oceans in the context of density-compensating temperature and salinity variations. These variations are invaluable tracers in the midlatitudes, revealing essential fundamental physical processes of the oceans, on scales from millimeters to thousands of kilometers. However, in the cold Arctic Ocean, temperature variations have little effect on density, and a measure of density-compensating variations in temperature and salinity (i.e., spiciness) is not appropriate. In general, temperature is simply a passive tracer, which implies that most of the heat transported in the Arctic Ocean relies entirely on the ocean dynamics determined by the salinity field. It is shown, however, that as the Arctic Ocean warms up, temperature will take on a new role in setting dynamical balances. Under continued warming, there exists the possibility for a regime shift in the mechanisms by which heat is transported in the Arctic Ocean. This may result in a cap on the storage of deep-ocean heat, having profound implications for future predictions of Arctic sea ice.
    Description: Support was provided by the National Science Foundation Division of Polar Programs Award 1350046 and Office of Naval Research Grant Number N00014-12-1-0110.
    Description: 2016-10-05
    Keywords: Geographic location/entity ; Arctic ; Circulation/ Dynamics ; Ocean dynamics
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    Seasonal and interannual variations of Irminger ring formation and boundary–interior heat exchange in FLAME (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1717-1734, doi:10.1175/JPO-D-15-0124.1.
    Description: The contribution of warm-core anticyclones shed by the Irminger Current off West Greenland, known as Irminger rings, to the restratification of the upper layers of the Labrador Sea is investigated in the 1/12° Family of Linked Atlantic Models Experiment (FLAME) model. The model output, covering the 1990–2004 period, shows strong similarities to observations of the Irminger Current as well as ring observations at a mooring located offshore of the eddy formation region in 2007–09. An analysis of fluxes in the model shows that while the majority of heat exchange with the interior indeed occurs at the site of the Irminger Current instability, the contribution of the coherent Irminger rings is modest (18%). Heat is provided to the convective region mainly through noncoherent anomalies and enhanced local mixing by the rings facilitating further exchange between the boundary and interior. The time variability of the eddy kinetic energy and the boundary to interior heat flux in the model are strongly correlated to the density gradient between the dense convective region and the more buoyant boundary current. In FLAME, the density variations of the boundary current are larger than those of the convective region, thereby largely controlling changes in lateral fluxes. Synchronous long-term trends in temperature in the boundary and the interior over the 15-yr simulation suggest that the heat flux relative to the temperature of the interior is largely steady on these time scales.
    Description: The authors were supported in this work by the U.S. National Science Foundation.
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Anticyclones ; Boundary currents ; Convection ; Eddies ; Fluxes
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    Satellite-derived ocean thermal structure for the North Atlantic hurricane season (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 144 (2016): 877-896, doi:10.1175/MWR-D-15-0275.1.
    Description: This paper describes a new model (method) called Satellite-derived North Atlantic Profiles (SNAP) that seeks to provide a high-resolution, near-real-time ocean thermal field to aid tropical cyclone (TC) forecasting. Using about 139 000 observed temperature profiles, a spatially dependent regression model is developed for the North Atlantic Ocean during hurricane season. A new step introduced in this work is that the daily mixed layer depth is derived from the output of a one-dimensional Price–Weller–Pinkel ocean mixed layer model with time-dependent surface forcing. The accuracy of SNAP is assessed by comparison to 19 076 independent Argo profiles from the hurricane seasons of 2011 and 2013. The rms differences of the SNAP-estimated isotherm depths are found to be 10–25 m for upper thermocline isotherms (29°–19°C), 35–55 m for middle isotherms (18°–7°C), and 60–100 m for lower isotherms (6°–4°C). The primary error sources include uncertainty of sea surface height anomaly (SSHA), high-frequency fluctuations of isotherm depths, salinity effects, and the barotropic component of SSHA. These account for roughly 29%, 25%, 19%, and 10% of the estimation error, respectively. The rms differences of TC-related ocean parameters, upper-ocean heat content, and averaged temperature of the upper 100 m, are ~10 kJ cm−2 and ~0.8°C, respectively, over the North Atlantic basin. These errors are typical also of the open ocean underlying the majority of TC tracks. Errors are somewhat larger over regions of greatest mesoscale variability (i.e., the Gulf Stream and the Loop Current within the Gulf of Mexico).
    Description: IFP is supported by Grants NSC 101-2628-M-002-001-MY4 and MOST 103-2111-M-002 -002 -MY3. JFP and SRJ were supported by the U.S. Office of Naval Research under the project “Impact of Typhoons on the North Pacific, ITOP.”
    Description: 2016-06-08
    Keywords: Atm/Ocean Structure/ Phenomena ; Atmosphere-ocean interaction ; Oceanic mixed layer ; Tropical cyclones ; Observational techniques and algorithms ; Satellite observations
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    Exploring practical estimates of the ensemble size necessary for particle filters (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 144 (2016): 861-875, doi:10.1175/MWR-D-14-00303.1.
    Description: Particle filtering methods for data assimilation may suffer from the “curse of dimensionality,” where the required ensemble size grows rapidly as the dimension increases. It would, therefore, be useful to know a priori whether a particle filter is feasible to implement in a given system. Previous work provides an asymptotic relation between the necessary ensemble size and an exponential function of , a statistic that depends on observation-space quantities and that is related to the system dimension when the number of observations is large; for linear, Gaussian systems, the statistic can be computed from eigenvalues of an appropriately normalized covariance matrix. Tests with a low-dimensional system show that these asymptotic results remain useful when the system is nonlinear, with either the standard or optimal proposal implementation of the particle filter. This study explores approximations to the covariance matrices that facilitate computation in high-dimensional systems, as well as different methods to estimate the accumulated system noise covariance for the optimal proposal. Since may be approximated using an ensemble from a simpler data assimilation scheme, such as the ensemble Kalman filter, the asymptotic relations thus allow an estimate of the ensemble size required for a particle filter before its implementation. Finally, the improved performance of particle filters with the optimal proposal, relative to those using the standard proposal, in the same low-dimensional system is demonstrated.
    Description: Slivinski was supported by the NSF through Grants DMS-0907904 and DMS-1148284, by ONR through DOD (MURI) Grant N000141110087, and by NCAR’s Advanced Study Program during a collaborative visit to NCAR.
    Description: 2016-05-11
    Keywords: Mathematical and statistical techniques ; Statistical techniques ; Models and modeling ; Data assimilation ; Ensembles ; Nonlinear models
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  • 180
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    Observations of the transfer of energy and momentum to the oceanic surface boundary layer beneath breaking waves (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1823-1837, doi:10.1175/JPO-D-15-0165.1.
    Description: Measurements just beneath the ocean surface demonstrate that the primary mechanism by which energy from breaking waves is transmitted into the water column is through the work done by the covariance of turbulent pressure and velocity fluctuations. The convergence in the vertical transport of turbulent kinetic energy (TKE) balances the dissipation rate of TKE at first order and is nearly an order of magnitude greater than the sum of the integrated Eulerian and Stokes shear production. The measured TKE transport is consistent with a simple conceptual model that assumes roughly half of the surface flux of TKE by wave breaking is transmitted to depths greater than the significant wave height. During conditions when breaking waves are inferred, the direction of momentum flux is more aligned with the direction of wave propagation than with the wind direction. Both the energy and momentum fluxes occur at frequencies much lower than the wave band, consistent with the time scales associated with wave breaking. The largest instantaneous values of momentum flux are associated with strong downward vertical velocity perturbations, in contrast to the pressure work, which is associated with strong drops in pressure and upward vertical velocity perturbations.
    Description: Funding for this research was provided by the National Science Foundation Grants OCE-1339032 and OCE-1338518
    Keywords: Circulation/ Dynamics ; Energy transport ; Mixing ; Momentum ; Turbulence ; Wave breaking ; Waves, oceanic
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    Remote sensing of the surface wind field over the coastal ocean via direct calibration of HF radar backscatter power (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 1377-1392, doi:10.1175/JTECH-D-15-0242.1.
    Description: The calibration and validation of a novel approach to remotely sense surface winds using land-based high-frequency (HF) radar systems are described. Potentially available on time scales of tens of minutes and spatial scales of 2–3 km for wide swaths of the coastal ocean, HF radar–based surface wind observations would greatly aid coastal ocean planners, researchers, and operational stakeholders by providing detailed real-time estimates and climatologies of coastal winds, as well as enabling higher-quality short-term forecasts of the spatially dependent wind field. Such observations are particularly critical for the developing offshore wind energy community. An autonomous surface vehicle was deployed within the Massachusetts Wind Energy Area, located south of Martha’s Vineyard, Massachusetts, for one month, collecting wind observations that were used to test models of wind-wave spreading and HF radar energy loss, thereby empirically relating radar-measured power to surface winds. HF radar–based extractions of the remote wind speed had accuracies of 1.4 m s−1 for winds less than 7 m s−1, within the optimal range of the radar frequency used. Accuracies degraded at higher winds due to low signal-to-noise ratios in the returned power and poor resolution of the model. Pairing radar systems with a range of transmit frequencies with adjustments of the extraction model for additional power and environmental factors would resolve many of the errors observed.
    Description: This analysis was supported by the Massachusetts Clean Energy Center. The HF radar data used were obtained during projects supported by the National Science Foundation, the NOAA Integrated Ocean Observing System (IOOS), and internal funds from the Woods Hole Oceanographic Institution.
    Description: 2016-12-24
    Keywords: Atm/Ocean Structure/ Phenomena ; Wind ; Observational techniques and algorithms ; Algorithms ; In situ oceanic observations ; Radars/Radar observations ; Remote sensing ; Surface observations
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    Evidence of energy and momentum flux from swell to wind (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2143-2156, doi:10.1175/JPO-D-15-0213.1.
    Description: Measurements of pressure near the surface in conditions of wind sea and swell are reported. Swell, or waves that overrun the wind, produces an upward flux of energy and momentum from waves to the wind and corresponding attenuation of the swell waves. The estimates of growth of wind sea are consistent with existing parameterizations. The attenuation of swell in the field is considerably smaller than existing measurements in the laboratory.
    Keywords: Circulation/ Dynamics ; Pressure ; Wind stress ; Wind waves ; Physical Meteorology and Climatology ; Air-sea interaction
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    Multiplexed spectral imaging of 120 different fluorescent labels (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: This article is distributed under the terms of the Creative Commons public domain dedication. The definitive version was published in PLoS One 11 (2016): e0158495, doi:10.1371/journal.pone.0158495.
    Description: The number of fluorescent labels that can unambiguously be distinguished in a single image when acquired through band pass filters is severely limited by the spectral overlap of available fluorophores. The recent development of spectral microscopy and the application of linear unmixing algorithms to spectrally recorded image data have allowed simultaneous imaging of fluorophores with highly overlapping spectra. However, the number of distinguishable fluorophores is still limited by the unavoidable decrease in signal to noise ratio when fluorescence signals are fractionated over multiple wavelength bins. Here we present a spectral image analysis algorithm to greatly expand the number of distinguishable objects labeled with binary combinations of fluorophores. Our algorithm utilizes a priori knowledge about labeled specimens and imposes a binary label constraint on the unmixing solution. We have applied our labeling and analysis strategy to identify microbes labeled by fluorescence in situ hybridization and here demonstrate the ability to distinguish 120 differently labeled microbes in a single image.
    Description: This work was supported by Grant 2007-3- 13 from the Alfred P. Sloan Foundation (to GGB), National Institutes of Health Grant 1RC1-DE020630 from the National Institute of Dental and Craniofacial Research (NIDCR) (to GGB) and by National Institutes of Health Fellowship 1F31-DE019576 from NIDCR (to AMV).
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    Influence of acidic pH on hydrogen and acetate production by an electrosynthetic microbiome (2015)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 9 (2014): e109935, doi:10.1371/journal.pone.0109935.
    Description: Production of hydrogen and organic compounds by an electrosynthetic microbiome using electrodes and carbon dioxide as sole electron donor and carbon source, respectively, was examined after exposure to acidic pH (~5). Hydrogen production by biocathodes poised at −600 mV vs. SHE increased〉100-fold and acetate production ceased at acidic pH, but ~5–15 mM (catholyte volume)/day acetate and〉1,000 mM/day hydrogen were attained at pH ~6.5 following repeated exposure to acidic pH. Cyclic voltammetry revealed a 250 mV decrease in hydrogen overpotential and a maximum current density of 12.2 mA/cm2 at −765 mV (0.065 mA/cm2 sterile control at −800 mV) by the Acetobacterium-dominated community. Supplying −800 mV to the microbiome after repeated exposure to acidic pH resulted in up to 2.6 kg/m3/day hydrogen (≈2.6 gallons gasoline equivalent), 0.7 kg/m3/day formate, and 3.1 kg/m3/day acetate ( = 4.7 kg CO2 captured).
    Description: This research was supported by a grant from the Department of Energy, Advanced Projects Research Agency – Energy (DE-AR0000089). CWM was supported with a Director's Postdoctoral Fellowship from Argonne National Laboratory.
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  • 185
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    Searching for the oldest baobab of Madagascar : radiocarbon investigation of large Adansonia rubrostipa trees (2015)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 10 (2015): e0121170, doi:10.1371/journal.pone.0121170.
    Description: We extended our research on the architecture, growth and age of trees belonging to the genus Adansonia, by starting to investigate large individuals of the most widespread Malagasy species. Our research also intends to identify the oldest baobabs of Madagascar. Here we present results of the radiocarbon investigation of the two most representative Adansonia rubrostipa (fony baobab) specimens, which are located in south-western Madagascar, in the Tsimanampetsotse National Park. We found that the fony baobab called “Grandmother” consists of 3 perfectly fused stems of different ages. The radiocarbon date of the oldest sample was found to be 1136 ± 16 BP. We estimated that the oldest part of this tree, which is mainly hollow, has an age close to 1,600 yr. This value is comparable to the age of the oldest Adansonia digitata (African baobab) specimens. By its age, the Grandmother is a major candidate for the oldest baobab of Madagascar. The second investigated specimen, called the “polygamous baobab”, consists of 6 partially fused stems of different ages. According to dating results, this fony baobab is 1,000 yr old. This research is the first investigation of the structure and age of Malagasy baobabs.
    Description: The research was fully funded by the Romanian Ministry of National Education CNCS-UEFISCDI under grant PN-II-ID-PCE-2013-76 (URL: http://uefiscdi.gov.ro/).
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  • 186
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    Methanol production by a broad phylogenetic array of marine phytoplankton (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0150820, doi:10.1371/journal.pone.0150820.
    Description: Methanol is a major volatile organic compound on Earth and serves as an important carbon and energy substrate for abundant methylotrophic microbes. Previous geochemical surveys coupled with predictive models suggest that the marine contributions are exceedingly large, rivaling terrestrial sources. Although well studied in terrestrial ecosystems, methanol sources are poorly understood in the marine environment and warrant further investigation. To this end, we adapted a Purge and Trap Gas Chromatography/Mass Spectrometry (P&T-GC/MS) method which allowed reliable measurements of methanol in seawater and marine phytoplankton cultures with a method detection limit of 120 nanomolar. All phytoplankton tested (cyanobacteria: Synechococcus spp. 8102 and 8103, Trichodesmium erythraeum, and Prochlorococcus marinus), and Eukarya (heterokont diatom: Phaeodactylum tricornutum, coccolithophore: Emiliania huxleyi, cryptophyte: Rhodomonas salina, and non-diatom heterokont: Nannochloropsis oculata) produced methanol, ranging from 0.8–13.7 micromolar in culture and methanol per total cellular carbon were measured in the ranges of 0.09–0.3%. Phytoplankton culture time-course measurements displayed a punctuated production pattern with maxima near early stationary phase. Stabile isotope labeled bicarbonate incorporation experiments confirmed that methanol was produced from phytoplankton biomass. Overall, our findings suggest that phytoplankton are a major source of methanol in the upper water column of the world’s oceans.
    Description: This project was solely supported by a grant to TJM from the National Science Foundation (Award# CHE-OCE 1131415).
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  • 187
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    The observed state of the water cycle in the early twenty-first century (2015)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 8289–8318, doi:10.1175/JCLI-D-14-00555.1.
    Description: This study quantifies mean annual and monthly fluxes of Earth’s water cycle over continents and ocean basins during the first decade of the millennium. To the extent possible, the flux estimates are based on satellite measurements first and data-integrating models second. A careful accounting of uncertainty in the estimates is included. It is applied within a routine that enforces multiple water and energy budget constraints simultaneously in a variational framework in order to produce objectively determined optimized flux estimates. In the majority of cases, the observed annual surface and atmospheric water budgets over the continents and oceans close with much less than 10% residual. Observed residuals and optimized uncertainty estimates are considerably larger for monthly surface and atmospheric water budget closure, often nearing or exceeding 20% in North America, Eurasia, Australia and neighboring islands, and the Arctic and South Atlantic Oceans. The residuals in South America and Africa tend to be smaller, possibly because cold land processes are negligible. Fluxes were poorly observed over the Arctic Ocean, certain seas, Antarctica, and the Australasian and Indonesian islands, leading to reliance on atmospheric analysis estimates. Many of the satellite systems that contributed data have been or will soon be lost or replaced. Models that integrate ground-based and remote observations will be critical for ameliorating gaps and discontinuities in the data records caused by these transitions. Continued development of such models is essential for maximizing the value of the observations. Next-generation observing systems are the best hope for significantly improving global water budget accounting.
    Description: This research was funded by multiple grants from NASA’s Energy and Water Cycle Study (NEWS) program.
    Description: 2016-05-01
    Keywords: Physical Meteorology and Climatology ; Water budget ; Observational techniques and algorithms ; Remote sensing ; Mathematical and statistical techniques ; Numerical analysis/modeling
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  • 188
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    The LatMix summer campaign : submesoscale stirring in the upper ocean (2015)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 1257–1279, doi:10.1175/BAMS-D-14-00015.1.
    Description: Lateral stirring is a basic oceanographic phenomenon affecting the distribution of physical, chemical, and biological fields. Eddy stirring at scales on the order of 100 km (the mesoscale) is fairly well understood and explicitly represented in modern eddy-resolving numerical models of global ocean circulation. The same cannot be said for smaller-scale stirring processes. Here, the authors describe a major oceanographic field experiment aimed at observing and understanding the processes responsible for stirring at scales of 0.1–10 km. Stirring processes of varying intensity were studied in the Sargasso Sea eddy field approximately 250 km southeast of Cape Hatteras. Lateral variability of water-mass properties, the distribution of microscale turbulence, and the evolution of several patches of inert dye were studied with an array of shipboard, autonomous, and airborne instruments. Observations were made at two sites, characterized by weak and moderate background mesoscale straining, to contrast different regimes of lateral stirring. Analyses to date suggest that, in both cases, the lateral dispersion of natural and deliberately released tracers was O(1) m2 s–1 as found elsewhere, which is faster than might be expected from traditional shear dispersion by persistent mesoscale flow and linear internal waves. These findings point to the possible importance of kilometer-scale stirring by submesoscale eddies and nonlinear internal-wave processes or the need to modify the traditional shear-dispersion paradigm to include higher-order effects. A unique aspect of the Scalable Lateral Mixing and Coherent Turbulence (LatMix) field experiment is the combination of direct measurements of dye dispersion with the concurrent multiscale hydrographic and turbulence observations, enabling evaluation of the underlying mechanisms responsible for the observed dispersion at a new level.
    Description: The bulk of this work was funded under the Scalable Lateral Mixing and Coherent Turbulence Departmental Research Initiative and the Physical Oceanography Program. The dye experiments were supported jointly by the Office of Naval Research and the National Science Foundation Physical Oceanography Program (Grants OCE-0751653 and OCE-0751734).
    Description: 2016-02-01
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  • 189
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    The observed state of the energy budget in the early twenty-first century (2015)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 8319-8346, doi:10.1175/JCLI-D-14-00556.1.
    Description: New objectively balanced observation-based reconstructions of global and continental energy budgets and their seasonal variability are presented that span the golden decade of Earth-observing satellites at the start of the twenty-first century. In the absence of balance constraints, various combinations of modern flux datasets reveal that current estimates of net radiation into Earth’s surface exceed corresponding turbulent heat fluxes by 13–24 W m−2. The largest imbalances occur over oceanic regions where the component algorithms operate independent of closure constraints. Recent uncertainty assessments suggest that these imbalances fall within anticipated error bounds for each dataset, but the systematic nature of required adjustments across different regions confirm the existence of biases in the component fluxes. To reintroduce energy and water cycle closure information lost in the development of independent flux datasets, a variational method is introduced that explicitly accounts for the relative accuracies in all component fluxes. Applying the technique to a 10-yr record of satellite observations yields new energy budget estimates that simultaneously satisfy all energy and water cycle balance constraints. Globally, 180 W m−2 of atmospheric longwave cooling is balanced by 74 W m−2 of shortwave absorption and 106 W m−2 of latent and sensible heat release. At the surface, 106 W m−2 of downwelling radiation is balanced by turbulent heat transfer to within a residual heat flux into the oceans of 0.45 W m−2, consistent with recent observations of changes in ocean heat content. Annual mean energy budgets and their seasonal cycles for each of seven continents and nine ocean basins are also presented.
    Description: This study is the result of a collaboration of multiple investigators each supported by the NEWS program.
    Keywords: Climatology ; Energy budget/balance ; Heat budgets/fluxes ; Radiative fluxes ; Surface fluxes ; Satellite observations
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  • 190
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    Toward quantifying the increasing role oceanic heat in sea ice loss in the new Arctic (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 2079–2105, doi:10.1175/BAMS-D-13-00177.1.
    Description: The loss of Arctic sea ice has emerged as a leading signal of global warming. This, together with acknowledged impacts on other components of the Earth system, has led to the term “the new Arctic.” Global coupled climate models predict that ice loss will continue through the twenty-first century, with implications for governance, economics, security, and global weather. A wide range in model projections reflects the complex, highly coupled interactions between the polar atmosphere, ocean, and cryosphere, including teleconnections to lower latitudes. This paper summarizes our present understanding of how heat reaches the ice base from the original sources—inflows of Atlantic and Pacific Water, river discharge, and summer sensible heat and shortwave radiative fluxes at the ocean/ice surface—and speculates on how such processes may change in the new Arctic. The complexity of the coupled Arctic system, and the logistic and technological challenges of working in the Arctic Ocean, require a coordinated interdisciplinary and international program that will not only improve understanding of this critical component of global climate but will also provide opportunities to develop human resources with the skills required to tackle related problems in complex climate systems. We propose a research strategy with components that include 1) improved mapping of the upper- and middepth Arctic Ocean, 2) enhanced quantification of important process, 3) expanded long-term monitoring at key heat-flux locations, and 4) development of numerical capabilities that focus on parameterization of heat-flux mechanisms and their interactions.
    Description: 2016-06-01
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  • 191
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    Interspecific hybridization in pilot whales and asymmetric genetic introgression in northern Globicephala melas under the scenario of global warming (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0160080, doi: 10.1371/journal.pone.0160080 .
    Description: Pilot whales are two cetacean species (Globicephala melas and G. macrorhynchus) whose distributions are correlated with water temperature and partially overlap in some areas like the North Atlantic Ocean. In the context of global warming, distribution range shifts are expected to occur in species affected by temperature. Consequently, a northward displacement of the tropical pilot whale G. macrorynchus is expected, eventually leading to increased secondary contact areas and opportunities for interspecific hybridization. Here, we describe genetic evidences of recurrent hybridization between pilot whales in northeast Atlantic Ocean. Based on mitochondrial DNA sequences and microsatellite loci, asymmetric introgression of G. macrorhynchus genes into G. melas was observed. For the latter species, a significant correlation was found between historical population growth rate estimates and paleotemperature oscillations. Introgressive hybridization, current temperature increases and lower genetic variation in G. melas suggest that this species could be at risk in its northern range. Under increasing environmental and human-mediated stressors in the North Atlantic Ocean, it seems recommendable to develop a conservation program for G. melas.
    Description: LM had a PCTI Grant from the Asturias Regional Government, referenced BP 10-004. MAS was supported by a 2013 FCT Investigator contract through POPH, QREN European Social Fund and the Portuguese Ministry for Science and Education. This study was also supported by a grant from the Principality of Asturias (reference: GRUPIN-2014-093).
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  • 192
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    On the movements of the North Atlantic Subpolar Front in the preinstrumental past (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 1545-1571, doi:10.1175/JCLI-D-15-0509.1.
    Description: Three sediment records of sea surface temperature (SST) are analyzed that originate from distant locations in the North Atlantic, have centennial-to-multicentennial resolution, are based on the same reconstruction method and chronological assumptions, and span the past 15 000 yr. Using recursive least squares techniques, an estimate of the time-dependent North Atlantic SST field over the last 15 kyr is sought that is consistent with both the SST records and a surface ocean circulation model, given estimates of their respective error (co)variances. Under the authors’ assumptions about data and model errors, it is found that the 10°C mixed layer isotherm, which approximately traces the modern Subpolar Front, would have moved by ~15° of latitude southward (northward) in the eastern North Atlantic at the onset (termination) of the Younger Dryas cold interval (YD), a result significant at the level of two standard deviations in the isotherm position. In contrast, meridional movements of the isotherm in the Newfoundland basin are estimated to be small and not significant. Thus, the isotherm would have pivoted twice around a region southeast of the Grand Banks, with a southwest–northeast orientation during the warm intervals of the Bølling–Allerød and the Holocene and a more zonal orientation and southerly position during the cold interval of the YD. This study provides an assessment of the significance of similar previous inferences and illustrates the potential of recursive least squares in paleoceanography.
    Description: OM acknowledges support from the U.S. National Science Foundation. CW acknowledges support from the European Research Council ERC Grant ACCLIMATE 339108.
    Description: 2016-08-19
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Fronts ; Mathematical and statistical techniques ; Inverse methods ; Kalman filters ; Variability ; Climate variability ; Oceanic variability
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  • 193
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    Pacific abyssal transport and mixing: Through the Samoan Passage versus around the Manihiki Plateau (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1577-1592, doi:10.1175/JPO-D-18-0124.1.
    Description: The main source feeding the abyssal circulation of the North Pacific is the deep, northward flow of 5–6 Sverdrups (Sv; 1 Sv ≡ 106 m3 s−1) through the Samoan Passage. A recent field campaign has shown that this flow is hydraulically controlled and that it experiences hydraulic jumps accompanied by strong mixing and dissipation concentrated near several deep sills. By our estimates, the diapycnal density flux associated with this mixing is considerably larger than the diapycnal flux across a typical isopycnal surface extending over the abyssal North Pacific. According to historical hydrographic observations, a second source of abyssal water for the North Pacific is 2.3–2.8 Sv of the dense flow that is diverted around the Manihiki Plateau to the east, bypassing the Samoan Passage. This bypass flow is not confined to a channel and is therefore less likely to experience the strong mixing that is associated with hydraulic transitions. The partitioning of flux between the two branches of the deep flow could therefore be relevant to the distribution of Pacific abyssal mixing. To gain insight into the factors that control the partitioning between these two branches, we develop an abyssal and equator-proximal extension of the “island rule.” Novel features include provisions for the presence of hydraulic jumps as well as identification of an appropriate integration circuit for an abyssal layer to the east of the island. Evaluation of the corresponding circulation integral leads to a prediction of 0.4–2.4 Sv of bypass flow. The circulation integral clearly identifies dissipation and frictional drag effects within the Samoan Passage as crucial elements in partitioning the flow.
    Description: This work was supported by the National Science Foundation under Grants OCE-1029268, OCE-1029483, OCE-1657264, OCE-1657870, OCE-1658027, and OCE-1657795. We thank the captain, crew, and engineers at APL/UW for their hard work and skill.
    Description: 2020-06-11
    Keywords: Abyssal circulation ; Bottom currents ; Boundary currents ; Channel flows ; Mixing ; Transport
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  • 194
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    The effect of beta on the downstream development of unstable, chaotic baroclinic waves (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2337-2343, doi:10.1175/JPO-D-19-0097.1.
    Description: The weakly unstable, two-layer model of baroclinic instability is studied in a configuration in which the flow is perturbed at the inflow section of a channel by a slow and periodic perturbation. In a parameter regime where the governing equation would be the Lorenz equations for chaos if the development occurs only in time, the solution behavior becomes considerably more complex as a function of time and downstream coordinate. In the absence of the beta effect it has earlier been shown that the chaotic behavior along characteristics renders the solution nearly discontinuous in the slow downstream coordinate of the asymptotic model. The additional presence of the beta effect, although expunging the chaos for large enough values of the beta parameter, also provides an additional mechanism for abrupt spatial change.
    Description: 2020-02-28
    Keywords: Cyclogenesis/cyclolysis ; Eddies ; Microscale processes/variability ; Stability
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  • 195
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    Blocking statistics in a varying climate: Lessons from a "traffic jam" model with pseudostochastic forcing (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric Sciences 76(10), (2019): 3013-3027, doi:10.1175/JAS-D-19-0095.1.
    Description: Recently Nakamura and Huang proposed a semiempirical, one-dimensional model of atmospheric blocking based on the observed budget of local wave activity in the boreal winter. The model dynamics is akin to that of traffic flow, wherein blocking manifests as traffic jams when the streamwise flux of local wave activity reaches capacity. Stationary waves modulate the jet stream’s capacity to transmit transient waves and thereby localize block formation. Since the model is inexpensive to run numerically, it is suited for computing blocking statistics as a function of climate variables from large-ensemble, parameter sweep experiments. We explore sensitivity of blocking statistics to (i) stationary wave amplitude, (ii) background jet speed, and (iii) transient eddy forcing, using frequency, persistence, and prevalence as metrics. For each combination of parameters we perform 240 runs of 180-day simulations with aperiodic transient eddy forcing, each time randomizing the phase relations in forcing. The model climate shifts rapidly from a block-free state to a block-dominant state as the stationary wave amplitude is increased and/or the jet speed is decreased. When eddy forcing is increased, prevalence increases similarly but frequency decreases as blocks merge and become more persistent. It is argued that the present-day climate lies close to the boundary of the two states and hence its blocking statistics are sensitive to climate perturbations. The result underscores the low confidence in GCM-based assessment of the future trend of blocking under a changing climate, while it also provides a theoretical basis for evaluating model biases and understanding trends in reanalysis data.
    Description: The main results of this paper emerged from a group project during Rossbypalooza, a student-led summer school at the University of Chicago in June 2018, with the theme of “Understanding climate through simple models.” The authors thank the participants of the summer school for their valuable feedback. Constructive criticisms of the two anonymous reviewers greatly improved the quality of the manuscript. The work is supported by NSF Grants AGS1563307 and AGS1810964
    Keywords: Blocking ; Nonlinear dynamics ; Planetary waves ; Potential vorticity ; Wave breaking ; Climate variability
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    Observations of diurnal coastal-trapped waves with a thermocline-intensified velocity field (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1973-1994, doi: 10.1175/JPO-D-18-0194.1.
    Description: Using 18 days of field observations, we investigate the diurnal (D1) frequency wave dynamics on the Tasmanian eastern continental shelf. At this latitude, the D1 frequency is subinertial and separable from the highly energetic near-inertial motion. We use a linear coastal-trapped wave (CTW) solution with the observed background current, stratification, and shelf bathymetry to determine the modal structure of the first three resonant CTWs. We associate the observed D1 velocity with a superimposed mode-zero and mode-one CTW, with mode one dominating mode zero. Both the observed and mode-one D1 velocity was intensified near the thermocline, with stronger velocities occurring when the thermocline stratification was stronger and/or the thermocline was deeper (up to the shelfbreak depth). The CTW modal structure and amplitude varied with the background stratification and alongshore current, with no spring–neap relationship evident for the observed 18 days. Within the surface and bottom Ekman layers on the shelf, the observed velocity phase changed in the cross-shelf and/or vertical directions, inconsistent with an alongshore propagating CTW. In the near-surface and near-bottom regions, the linear CTW solution also did not match the observed velocity, particularly within the bottom Ekman layer. Boundary layer processes were likely causing this observed inconsistency with linear CTW theory. As linear CTW solutions have an idealized representation of boundary dynamics, they should be cautiously applied on the shelf.
    Description: An Australian Research Council Discovery Project (DP 140101322), and a UWA Research Collaboration Award funded this work. T. L. Schlosser acknowledges the support of an Australian Government Research Training Program (RTP) Scholarship. We thank the crew, volunteers and scientists who aided in the field data collection aboard the R/V Revelle, which was funded by the National Science Foundation (OCE-1129763). The continental slope moorings, T4 (M32) and T3 (M44), were also funded by the National Science Foundation (OCE-1129763) and were conceived, planned, and executed by Matthew Alford, Jennifer Mackinnon, Jonathan Nash, Harper Simmons, and Gunnar Voet. We also thank Harper Simmons for the combined R/V Revelle multibeam and Geoscience Australia bathymetry used in this study. We thank the two anonymous reviewers whose comments improved this work.
    Description: 2020-01-16
    Keywords: Australia ; Continental shelf/slope ; Boundary currents ; Dynamics ; Waves, oceanic
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    Using a Bayesian network to understand the importance of coastal storms and undeveloped landscapes for the creation and maintenance of early successional habitat (2019)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zeigler, S. L., Gutierrez, B. T., Sturdivant, E. J., Catlin, D. H., Fraser, J. D., Hecht, A., Karpanty, S. M., Plant, N. G., & Thieler, E. R. Using a Bayesian network to understand the importance of coastal storms and undeveloped landscapes for the creation and maintenance of early successional habitat. Plos One, 14(7), (2019): e0209986, doi:10.1371/journal.pone.0209986.
    Description: Coastal storms have consequences for human lives and infrastructure but also create important early successional habitats for myriad species. For example, storm-induced overwash creates nesting habitat for shorebirds like piping plovers (Charadrius melodus). We examined how piping plover habitat extent and location changed on barrier islands in New York, New Jersey, and Virginia after Hurricane Sandy made landfall following the 2012 breeding season. We modeled nesting habitat using a nest presence/absence dataset that included characterizations of coastal morphology and vegetation. Using a Bayesian network, we predicted nesting habitat for each study site for the years 2010/2011, 2012, and 2014/2015 based on remotely sensed spatial datasets (e.g., lidar, orthophotos). We found that Hurricane Sandy increased piping plover habitat by 9 to 300% at 4 of 5 study sites but that one site saw a decrease in habitat by 27%. The amount, location, and longevity of new habitat appeared to be influenced by the level of human development at each site. At three of the five sites, the amount of habitat created and the time new habitat persisted were inversely related to the amount of development. Furthermore, the proportion of new habitat created in high-quality overwash was inversely related to the level of development on study areas, from 17% of all new habitat in overwash at one of the most densely developed sites to 80% of all new habitat at an undeveloped site. We also show that piping plovers exploited new habitat after the storm, with 14–57% of all nests located in newly created habitat in the 2013 breeding season. Our results quantify the importance of storms in creating and maintaining coastal habitats for beach-nesting species like piping plovers, and these results suggest a negative correlation between human development and beneficial ecological impacts of these natural disturbances.
    Description: Funding for this work was provided through a U.S. Geological Survey Mendenhall Post-Doctoral Fellowship awarded to S. Zeigler, with funding for this fellowship made through a grant to E.R. Thieler from the North Atlantic Landscape Conservation Cooperative. Funders did not play a role in study design, data collection or analysis, decision to publish, or preparation of the manuscript.
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    The emergence of the North Icelandic Jet and its evolution from northeast Iceland to Denmark Strait (2019)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Semper, S., Vage, K., Pickart, R. S., Valdimarsson, H., Torres, D. J., & Jonsson, S. The emergence of the North Icelandic Jet and its evolution from northeast Iceland to Denmark Strait. Journal of Physical Oceanography, 49(10), (2019): 2499-2521, doi:10.1175/JPO-D-19-0088.1.
    Description: The North Icelandic Jet (NIJ) is an important source of dense water to the overflow plume passing through Denmark Strait. The properties, structure, and transport of the NIJ are investigated for the first time along its entire pathway following the continental slope north of Iceland, using 13 hydrographic/velocity surveys of high spatial resolution conducted between 2004 and 2018. The comprehensive dataset reveals that the current originates northeast of Iceland and increases in volume transport by roughly 0.4 Sv (1 Sv ≡ 106 m3 s−1) per 100 km until 300 km upstream of Denmark Strait, at which point the highest transport is reached. The bulk of the NIJ transport is confined to a small area in Θ–S space centered near −0.29° ± 0.16°C in Conservative Temperature and 35.075 ± 0.006 g kg−1 in Absolute Salinity. While the hydrographic properties of this transport mode are not significantly modified along the NIJ’s pathway, the transport estimates vary considerably between and within the surveys. Neither a clear seasonal signal nor a consistent link to atmospheric forcing was found, but barotropic and/or baroclinic instability is likely active in the current. The NIJ displays a double-core structure in roughly 50% of the occupations, with the two cores centered at the 600- and 800-m isobaths, respectively. The transport of overflow water 300 km upstream of Denmark Strait exceeds 1.8 ± 0.3 Sv, which is substantially larger than estimates from a year-long mooring array and hydrographic/velocity surveys closer to the strait, where the NIJ merges with the separated East Greenland Current. This implies a more substantial contribution of the NIJ to the Denmark Strait overflow plume than previously envisaged.
    Description: Six different research vessels were involved in the collection of the data used in this study: RRS James Clark Ross, R/V Knorr, R/V Bjarni Sæmundsson, R/V Håkon Mosby, NRV Alliance, and R/V Kristine Bonnevie. We thank the captain and crew of each of these vessels for their hard work as well as the many watch standers who have sailed on the cruises and helped collect the measurements. We also thank Frank Bahr for processing the VMADCP data collected on NRV Alliance and Magnús Danielsen for the processing of the hydrographic data collected on R/V Bjarni Sæmundsson. We acknowledge Leah Trafford McRaven for assistance with Fig. 1 and two anonymous reviewers for their helpful comments, which improved the manuscript. Funding for the project was provided by the Bergen Research Foundation Grant BFS2016REK01 (K. Våge and S. Semper), the Norwegian Research Council under Grant Agreement 231647 (K. Våge), and the U.S. National Science Foundation Grants OCE-1259618 and OCE-1756361 (R. S. Pickart and D. J. Torres), as well as OCE-1558742 (R. S. Pickart). The dataset is available on PANGAEA under https://doi.pangaea.de/10.1594/PANGAEA.903535.
    Keywords: Ocean ; Continental shelf/slope ; Ocean circulation ; Transport ; Intermediate waters ; In situ oceanic observations
    Repository Name: Woods Hole Open Access Server
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  • 199
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    Local and downstream relationships between Labrador Sea Water volume and North Atlantic meridional overturning circulation variability (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(13), (2019): 3883-3898, doi:10.1175/JCLI-D-18-0735.1.
    Description: While it has generally been understood that the production of Labrador Sea Water (LSW) impacts the Atlantic meridional overturning circulation (MOC), this relationship has not been explored extensively or validated against observations. To explore this relationship, a suite of global ocean–sea ice models forced by the same interannually varying atmospheric dataset, varying in resolution from non-eddy-permitting to eddy-permitting (1°–1/4°), is analyzed to investigate the local and downstream relationships between LSW formation and the MOC on interannual to decadal time scales. While all models display a strong relationship between changes in the LSW volume and the MOC in the Labrador Sea, this relationship degrades considerably downstream of the Labrador Sea. In particular, there is no consistent pattern among the models in the North Atlantic subtropical basin over interannual to decadal time scales. Furthermore, the strong response of the MOC in the Labrador Sea to LSW volume changes in that basin may be biased by the overproduction of LSW in many models compared to observations. This analysis shows that changes in LSW volume in the Labrador Sea cannot be clearly and consistently linked to a coherent MOC response across latitudes over interannual to decadal time scales in ocean hindcast simulations of the last half century. Similarly, no coherent relationships are identified between the MOC and the Labrador Sea mixed layer depth or the density of newly formed LSW across latitudes or across models over interannual to decadal time scales.
    Description: FL and MSL are thankful for the financial support from the National Science Foundation (NSF) Physical Oceanography Program (NSF-OCE-12-59102, NSF-OCE-12-59103). The NCAR contribution was supported by the National Oceanic and Atmospheric Administration (NOAA) Climate Program Office (CPO) under Climate Variability and Predictability Program (CVP) Grant NA13OAR4310138 and by the NSF Collaborative Research EaSM2 Grant OCE-1243015. NCAR is sponsored by the NSF. NPH is supported by NERC programs U.K. OSNAP (NE/K010875) and ACSIS (National Capability, NE/N018044/1). Y-OK is supported by NOAA CPO CVP (NA17OAR4310111) and NSF EaSM2 grant (OCE-1242989). AR is supported by NASA-ROSES Modeling, Analysis and Prediction 2016 NNX16AC93G-MAP. RZ is supported by NOAA/OAR. Argo data were collected and made freely available by the International Argo Program and the national programs that contribute to it (http://www.argo.ucsd.edu, http://argo.jcommops.org). The Argo Program is part of the Global Ocean Observing System (http://doi.org/10.17882/42182). Data from the RAPID-MOCHA-WBTS array funded by NERC, NSF and NOAA are freely available from www.rapid.ac.uk/rapidmoc. We thank Stephen Griffies for providing access to the GFDL-MOM025 COREII simulation output and Matthew Harrison and Xiaoqin Yan for their comments on the manuscript. We also thank the anonymous reviewers for their valuable comments.
    Description: 2020-06-11
    Keywords: North Atlantic Ocean ; Deep convection ; Meridional overturning circulation ; Model comparison
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  • 200
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    Can we detect submesoscale motions in drifter pair dispersion? (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2237-2254, doi: 10.1175/JPO-D-18-0181.1.
    Description: A cluster of 45 drifters deployed in the Bay of Bengal is tracked for a period of four months. Pair dispersion statistics, from observed drifter trajectories and simulated trajectories based on surface geostrophic velocity, are analyzed as a function of drifter separation and time. Pair dispersion suggests nonlocal dynamics at submesoscales of 1–20 km, likely controlled by the energetic mesoscale eddies present during the observations. Second-order velocity structure functions and their Helmholtz decomposition, however, suggest local dispersion and divergent horizontal flow at scales below 20 km. This inconsistency cannot be explained by inertial oscillations alone, as has been reported in recent studies, and is likely related to other nondispersive processes that impact structure functions but do not enter pair dispersion statistics. At scales comparable to the deformation radius LD, which is approximately 60 km, we find dynamics in agreement with Richardson’s law and observe local dispersion in both pair dispersion statistics and second-order velocity structure functions.
    Description: This research was supported by the Air Sea Interaction Regional Initiative (ASIRI) under ONR Grant N00014-13-1-0451 (SE and AM) and ONR Grant N00014-13-1-0477 (VH and LC). Additionally, AM and SE thank NSF (Grant OCE-I434788) and ONR (Grant N00014-16-1-2470) for support; VH and LC were further supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156. We thank Joe LaCasce, Dhruv Balwada, and one anonymous reviewer for helpful comments and discussions that significantly improved this manuscript. The authors thank the captain and crew of the R/V Roger Revelle. The SVP-type drifters are part of the Global Drifter Program and supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156 and are available under http://www.aoml.noaa.gov/phod/dac/. The Ssalto/Duacs altimeter products were produced and distributed by the Copernicus Marine and Environment Monitoring Service (CMEMS, http://www.marine.copernicus.eu).
    Keywords: Dispersion ; Fronts ; Mesoscale processes ; Subgrid-scale processes ; Trajectories ; Turbulence
    Repository Name: Woods Hole Open Access Server
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