ALBERT

Description: The Black Sea has undergone several limnic and marine stages due to fluctuations in the global sea level. The exchange of saline water from the Mediterranean Sea to the Black Sea through the Bosporus Strait was interrupted when the sea level dropped below the Bosporus sill. This induced limnic conditions, while marine conditions were established after the reconnection to saline Mediterranean seawater. Extended river fan systems developed during sea level low-stands, providing large amounts of organic material being buried by rapid sedimentation on the slopes of the Black Sea margins. The biogenic degradation of this material produces most of the methane gas expelled into the anoxic water column today. This largely happens by ubiquitous cold vents at ~700 m water depth (i.e. at the stability boundary of methane hydrates) and by mud volcanoes in ~2000 m water depth. A significant amount of gas is expected to accumulate in the sediment within the methane hydrate stability zone. However, bottom-simulating reflectors, the seismic indicator for gas hydrates, are not found everywhere along the margin. Recent analyses of the Danube and Dniepr fans have revealed a discontinuous gas hydrate formation in an area with no active seeps, while areas of active seepage located in the vicinity of BSR reflections held no gas hydrates. In addition, the ongoing diffusion of salt into the uppermost Black Sea sediment pore space since the last glacial maximum further reduces the volume of the gas hydrate stability zone. Estimates of the total amount of gas stored in gas hydrates therefore require a detailed structural analysis prior to regional- or basin-scale modelling attempts.

Description: Marine electromagnetic methods provide useful and independent measures for the identification and quantification of submarine gas hydrates. The resistivity of seafloor sediments, drawn from area-wide electromagnetic data, mainly depends on the sediment porosity and the nature of the pore fluid. Gas hydrates and free gas are both electrically resistive. The replacement of saline water, thus conductive pore water with resistive gas hydrate or free gas, increases the sediment resistivity and can be used to provide accurate saturation estimates if the background lithology is known. While seismic methods are predominantly used to study the distribution of submarine gas hydrates, a growing number of global field studies have demonstrated that the joint interpretation of marine seismic and electromagnetic methods improves the evaluation of submarine gas hydrate targets. This article discusses the relationship between resistivity and free gas/gas hydrate saturation levels, how the resistivity of the sediment may be measured and summarizes the status and results of current and past field studies.

Description: Every year, vast quantities of plastic debris arrive at the ocean surface. Nevertheless, our understanding of plastic movements is largely incomplete and many of the processes involved with the horizontal and vertical displacement of plastics in the ocean are still basically unknown. In this chapter we review the dynamics associated with the transport of plastics and other pollutants at oceanic fronts. Fronts had been historically defined as simple barriers to exchange, but here we show that the role of these structures in influencing the transport of plastics is more complex. The tools used to investigate the occurrence of frontal structures at various spatial scales are reviewed in detail, with a particular focus on their potential applications to the study of plastic pollution. Three selected case studies are presented to better describe the role of fronts in favoring or preventing plastic exchanges: the large-scale Antarctic Circumpolar Current, a Mediterranean mesoscale front, and the submesoscale fronts in the Gulf of Mexico. Lastly, some aspects related to the vertical subduction of plastic particles at oceanic fronts are discussed as one of the most promising frontiers for future research. The accumulation of floating debris at the sea surface is mainly affected by the horizontal components of frontal dynamics. At the same time, vertical components can be relevant for the export of neutrally buoyant particles from the surface into the deep sea. Based on these evidences, we propose that submesoscale processes can provide a fast and efficient route of plastic transport within the mixed layer, while mesoscale instabilities and associated vertical velocities might be the dominant mechanism to penetrate the deeper ocean on slower but broader scales. We conclude that given the ubiquitous presence of fronts in the world’s ocean, their contribution to the global plastic cycle is probably not negligible and the role of these processes in vertically displacing neutrally buoyant microplastics should be investigated in more detail.

Description: The Barents Sea, located close to the Arctic Ocean, is a petroleum province featuring an extensive occurrence of gas hydrates and shallow gas in compacted sediments. Glacial erosion and uplift have contributed to the migration of gas originating from deeper rocks to the shallow sediments of this region, resulting in hydrates with higher-order hydrocarbons in addition to methane. This article documents reported gas hydrate indications and major controls on hydrate stability in the Barents Sea.

Description: Since global navigation satellite systems (GNSS) for determining the absolute geolocation do not reach into the ocean, underwater robots typically obtain a GNSS position at the water surface and then use a combination of different sensors for estimating their pose while diving, including inertial navigation, acoustic doppler velocity logs, ultra short baseline localization systems and pressure sensors. When re-navigating to the same seafloor location after several days, months or years, e.g. for coastal monitoring, the absolute uncertainty of such systems can be in the range of meters for shallow water, and tens of meters for deeper waters in practice. To enable absolute relocalization in marine data science applications that require absolute seafloor positions in the range of centimeter precision, in this contribution we suggest to equip the monitoring area with visual markers that can be detected reliably even in case they are partially overgrown or partially buried by sediment, which can happen quickly in coastal waters. Inspired by patterns successful in camera calibration, we create robust markers that exhibit features at different scales, in order to allow detection, identification and pose estimation from different cameras and various altitudes as visibility (and therefore the maximum possible survey altitude) in coastal waters can vary significantly across seasons, tides and weather. The low frequency content of the marker resembles a human-readable digit, in order to allow easy identification by scientists. We present early results including promising initial tests in coastal waters.

Description: While offshore groundwater has been utilized by coastal communities as far back as 1000 BC, only in the past 10 years has the global volume of fresh-to-brackish water hosted in offshore aquifers been truly appreciated. There are vast quantities (~300–500 × 103 km3) of offshore freshened groundwater sequestered in continental shelf sediments under water depths of less than 60 m within 110 km of the coastline. New marine geophysical methods now make it possible to map and quantify low salinity offshore groundwater bodies. To date, these offshore resources have not been developed. Offshore freshened groundwater could be produced if wells are located close to the shoreline and coastal desalination plants.

Description: Underwater images are challenging for correspondence search algorithms, which are traditionally designed based on images captured in air and under uniform illumination. In water however, medium interactions have a much higher impact on the light propagation. Absorption and scattering cause wavelength- and distance-dependent color distortion, blurring and contrast reductions. For deeper or turbid waters, artificial illumination is required that usually moves rigidly with the camera and thus increases the appearance differences of the same seafloor spot in different images. Correspondence search, e.g. using image features, is however a core task in underwater visual navigation employed in seafloor surveys and is also required for 3D reconstruction, image retrieval and object detection. For underwater images, it has to be robust against the challenging imaging conditions to avoid decreased accuracy or even failure of computer vision algorithms. However, explicitly taking underwater nuisances into account during the feature extraction and matching process is challenging. On the other hand, learned feature extraction models achieved high performance in many in-air problems in recent years. Hence we investigate, how such a learned robust feature model, D2Net, can be applied to the underwater environment and particularly look into the issue of cross domain transfer learning as a strategy to deal with the lack of annotated underwater training data.

Description: Fish food is an inevitable item in human consumption with healthy sourceof good quality proteins and fat. Aqua industry can help to improve food security,livelihoods for the poorest and to meet the world’s food demands. But producingmore seafood that is at affordable cost with rich nutrition is challenging for aquaindustry. Many factors affect the productivity of aqua industry; one such an impor-tant constraint is bacterial diseases. Hence, Aqua industry, a booming businesssector, immensely requires continued research with scientific and technical devel-opments, and innovations. Study of bacterialfish disease is one such thrust areawhich requires intense research to understand the causes and control bacterialdiseases infish. The appearance and development of afish disease is the result ofthe interaction among pathogen, host and environment. An insight into bacterialfishdiseases, clinical symptoms and treatment may help to manage the bacterial diseasesand so can make aqua industry a more profitablefield. This chapter deals withdifferent aspects of the most threatening bacterial diseases, occurring in farmedfishes and also in wildfishes, which are results infish loss and economic lossworldwide. A wide range of gram positive and gram-negative bacteria causingbacterial diseases, clinical symptoms, diagnosis, treatment, vaccines and the natureof water habitat are also discussed in this chapter.

Description: The Digital Earth project aimed for the integration of data science and Earth science. Here, we reflect on the main lessons learned that include the need for interdisciplinary collaboration, thinking out of the box, the concept of ‘thinking in workflows’ and models for the sustainable implementation of scientific software, data infrastructure and policies.

Description: Digital Earth is a project funded by the German Helmholtz Association with all centers of the research field Earth and Environment involved. The main goal of the Digital Earth project is to develop and bundle data science methods in extendable and maintainable scientific workflows that enable natural scientists in collaboration with data scientists to achieve a deeper understanding of the Earth system. This has been achieved by developing solutions for data analysis and exploration with visual and computational approaches with data obtained in a SMART monitoring approach and modeling studies, accompanied by a continuous evaluation of the collaboration processes. In this chapter, the history, setup, and focus of the Digital Earth project are described.

Description: The Digital Earth project aims at a strong interrelation between Data and Earth Science and a step-change in implementing data science methods within Earth science research. During the project, the progress of interdisciplinary collaboration and adoption of data science methods has been measured and assessed with the goal to trace the success of the project. This chapter provides the set-up of this evaluation and the results from two online questionnaires that were held after the start and before the end of the project.

Description: Diversity within marine microbiomes spans the three domains of life: microbial eukaryotes (i.e., protists), bacteria, and archaea. Although protists were the first microbes observed by microscopy, it took the advent of molecular techniques to begin to resolve their complex and reticulate evolutionary history. Symbioses between microbial entities have been key in this journey, and such interactions continue to shape the ecology of marine microbiomes. Nowadays, photosynthetic marine protists are appreciated for their activities as primary producers, rivalling land plant contributions in the global carbon cycle. Predatory protists are known for consuming prokaryotes and other protists, with some combining metabolisms into a mixotrophic lifestyle. Still, much must be learned about specific interactions and lifestyles, especially for uncultured groups recognized just by environmental sequences. With respect to the fate of protists in food webs, there are many paths to consider. Despite being in early stages of identifying interactions, whether mutualistic or death-inducing infections by parasites and viruses, knowledge is advancing rapidly via methods for interrogation in nature without culturing. Here, we review marine protists, their evolutionary histories, diversity, ecological roles, and lifestyles in all layers of the ocean, with reference to how views have shifted over time through extensive investigation.

Description: Data-driven science has turned into a fourth fundamental paradigm of performing research. Earth System Science, following a holistic approach in unraveling the complex network of processes and interactions shaping system Earth, particularly profits from embracing data-driven approaches next to observation and modeling. At the end, increasing digitalization of Earth sciences will lead to cultural transformation towards a Digital Earth Culture.

Description: New sedimentological data of facies and diagenesis as well as chronological data including strontium (87Sr/86Sr)-isotope ratios and uranium (U)-series dating, radiocarbon (14C) accelerator mass spectrometry (AMS) dating and biostratigraphy from elevated reef terraces (makatea) in the southern Cook Islands of Mangaia, Rarotonga and Aitutaki contribute to controversial discussions regarding age and sea-level relationships of these occurrences during the Neogene and Quaternary. The oldest limestones of the uplifted makatea island of Mangaia include reef-related facies which are mid-Miocene in age, based on new Sr-isotope and biostratigraphical data. In between these older deposits and the lowest coastal reef terrace of marine isotope stage (MIS) 5e, various older Pleistocene reef-related facies were identified. Based on Sr-isotope ratios, these were deposited during earlier Pleistocene highstands (as old as 2.28 Ma). Rare reef terraces on Rarotonga belong to the Plio-Pleistocene and the late Miocene, according to 87Sr/86Sr ratios. The late Miocene age is enigmatic as it exceeds the age of subaerially exposed volcanic rocks of Rarotonga island. The fossil reef could have formed on an older submarine volcanic high that was later displaced by younger volcanism to its present position, or the Sr-age could be too old due to diagenetic resetting. The Plio-Pleistocene Rarotonga reef terraces are overlain irregularly by Holocene reef deposits that are interpreted as storm rubble. Reef terraces on Aitutaki represent evidence of a higher-than-present (up to 1 m) sea-level during the late Holocene, based on 14C AMS age data. They are very similar to elevated late Holocene reefs of adjacent French Polynesia with regard to composition, elevation and age.

Description: A comprehensive study of the Earth system and its related processes requires a holistic examination and understanding of multidimensional data acquired with a large number of different sensors or produced by various models. To this end, the Digital Earth project developed a set of software solutions to study environmental data sets using visual approaches. In the following chapter, we present three data visualization products developed to deal with the challenges of the analysis and exploration of environmental data.

Description: Reliable data are the base of all scientific analyses, interpretations and conclusions. Evaluating data in a smart way speeds up the process of interpretation and conclusion and highlights where, when and how additionally acquired data in the field will support knowledge gain. An extended SMART monitoring concept is introduced which includes SMART sensors, DataFlows, MetaData and Sampling approaches and tools. In the course of the Digital Earth project, the meaning of SMART monitoring has significantly evolved. It stands for a combination of hard- and software tools enhancing the traditional monitoring approach where a SMART monitoring DataFlow is processed and analyzed sequentially on the way from the sensor to a repository into an integrated analysis approach. The measured values itself, its metadata, and the status of the sensor, and additional auxiliary data can be made available in real time and analyzed to enhance the sensor output concerning accuracy and precision. Although several parts of the four tools are known, technically feasible and sometimes applied in Earth science studies, there is a large discrepancy between knowledge and our derived ambitions and what is feasible and commonly done in the reality and in the field.

Description: Global population projections foresee the biggest increase to occur in Africa with most of the available uncultivated land to ensure food security remaining on the continent. Simultaneously, greenhouse gas emissions are expected to rise due to ongoing land use change, industrialisation, and transport amongst other reasons with Africa becoming a major emitter of greenhouse gases globally. However, distinct knowledge on greenhouse gas emissions sources and sinks as well as their variability remains largely unknown caused by its vast size and diversity and an according lack of observations across the continent. Thus, an environmental research infrastructure—as being setup in other regions—is more needed than ever. Here, we present the results of a design study that developed a blueprint for establishing such an environmental research infrastructure in Africa. The blueprint comprises an inventory of already existing observations, the spatial disaggregation of locations that will enable to reduce the uncertainty in climate forcing’s in Africa and globally as well as an overall estimated cost for such an endeavour of about 550 M€ over the next 30 years. We further highlight the importance of the development of an e-infrastructure, the necessity for capacity development and the inclusion of all stakeholders to ensure African ownership.

Description: The present study aims to valorize the apple peels (AP) and grape seeds (GS) by the fortification of the yogurts using their powder. Firstly, the optimization of the extraction parameters for assessing maximum of total phenolic content (TPC) was achieved. Under the optimized conditions, the experimental maximum yields of TPC were 19.33 ± 2.33 and 240.59 ± 4.77 mg Gallic Acid Equivalents (GAE)/100 g Dry Weight (DW) for AP and GS, respectively, which was in close agreement with predicted values (19.32 ± 0.91 and 242.26 ± 11.08 mg GAE/100 g DW for AP and GS, respectively). The antioxidant capacity of GS extract was better with IC50 of 12.22 ± 0.89 and 225.47 ± 7.10 µg/ml in DPPH and phosphomolybdenum assays, respectively. Besides, powder from these by-products was incorporated into yogurt samples. The classification test revealed that the yogurt prepared with GS powder was the preferred one.

Description: Pa.ra.rho.do.spi.ril'lum. Gr. pref. para-, beside, alongside of, near, like; N.L. neut. n. Rhodospirillum, a bacterial generic name; N.L. neut. n. Pararhodospirillum, resembling Rhodospirillum. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Rhodospirillaceae / Pararhodospirillum Pararhodospirillum species are spiral-shaped, mesophilic, and phototrophic freshwater bacteria of the Rhodospirillaceae family. Cells are motile by polar flagella, and photosynthetic pigments are located in internal photosynthetic membranes present as lamellar stacks. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series with spirilloxanthin itself lacking. Ubiquinone-9 and rhodoquinone-9 are the major quinones. All species are sensitive to oxygen and require anoxic or microoxic conditions for growth. They grow photoheterotrophically under anoxic conditions in the light. Photoautotrophic growth, aerobic chemotrophic growth, and fermentative growth have not been demonstrated. Growth factors are required. DNA G + C content (mol%): 60.2–65.8 (Bd and HPLC) and 64.7–67 (GA). Type species: Pararhodospirillum photometricum Lakshmi et al. 2014VP (basonym: Rhodospirillum photometricum Molisch 1907AL).

Description: Rho.do.ci'sta Gr. neut. n. rhodon, rose; L. fem. n. cista a basket; N.L. fem. n. Rhodocista, red basket. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Azospirillaceae / Rhodocista Rhodocista centenaria is a well-characterized thermotolerant, phototrophic purple bacterium growing optimally at a temperature of 40–45°C and a maximal growth temperature of 48°C. Under low nutrient conditions, Rhodocista forms desiccation-, heat-, and UV-resistant cysts, which enable survival under severe drought and salt stress. Cells are motile by a single polar flagellum in liquid culture but in addition form lateral flagella on agar surfaces and under these conditions may show a characteristic phototactic movement. Rhodocista species grow under photoheterotrophic conditions and also are able to perform a chemotrophic aerobic metabolism. They encode enzymes for autotrophic carbon dioxide fixation and fixation of dinitrogen, although autotrophic growth has so far not been demonstrated. In the type species, bacteriochlorophyll biosynthesis occurs under both aerobic and anaerobic growth conditions. Aerobically grown cells are fully pigmented. In other species, oxygen may inhibit photosynthetic pigment biosynthesis, and aerobically grown cells are colorless. DNA G + C content (mol%): 68.8–69.9 (Tm), 70.5 (WGS). Type species: Rhodocista (Rcs.) centenaria Kawasaki et al. 1992, VL48 (basonym: Rhodospirillum centenum Favinger et al. 1989, VL48).

Description: Rho.do.pi'la. Gr. neut. n. rhodon the rose; N.L. fem. n. pila a ball or sphere; N.L. fem. n. Rhodopila red sphere. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Acetobacteraceae / Rhodopila Rhodopila globiformis is one of the very few anaerobic phototrophic purple bacteria that can grow below pH 6 with an optimum depending on the organic carbon substrate from 4.8 to 5.6. Growth occurs preferably photoheterotrophically under anoxic conditions in the light. Cells are sensitive to oxygen but grow by respiration under microoxic conditions in the dark. Growth factors are required. They are acidophilic freshwater bacteria that inhabit acidic warm sulfur springs. Cells are spherical to ovoid, motile by means of polar flagella, and divide by binary fission. They stain Gram-negative and have internal photosynthetic membranes of the vesicular type. Rhodopila is classified within the Acetobacteraceae family and Rhodospirillales order of the Alphaproteobacteria. The photosynthetic pigments are bacteriochlorophyll a and carotenoids. The major fatty acids are C18:1 (∼75%) and C16:0. Ubiquinones, menaquinones, and rhodoquinones with 9 and 10 isoprene units are produced. DNA G + C content (mol%): 67.1 (genome analysis). Type species: Rhodopila globiformis Imhoff et al. 1984VP (basonym: Rhodopseudomonas globiformis Pfennig 1974AL).

Description: Rho.do.pla'nes. Gr. neut. n. rhodon rose; Gr. masc. n. planos a wanderer; N.L. masc. n. Rhodoplanes a red wanderer. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Rhodoplanes The genus Rhodoplanes accommodates species of anoxygenic facultative phototrophic bacteria that grow optimally under anaerobic conditions in the light. They belong to the family Hyphomicrobiaceae of the order Rhizobiales within the class Alphaproteobacteria. Cells are Gram-stain-negative rods and multiply by budding and asymmetric cell division. Motile by means of polar, subpolar, or lateral flagella. Internal photosynthetic membranes are present as lamellar stacks parallel to the cytoplasmic membrane. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series. Photoorganotrophy with pyruvate and some other organic acids is the best mode of growth. Straight-chain, monounsaturated C18:1 ω7c is the main component of the cellular fatty acids and C16:0 is a second major component. Ubiquinones and rhodoquinones with 10 isoprene units (Q-10 and RQ-10) are present. The main components of polar lipids are phosphatidylethanolamine, phosphatidylcholine, phosphatidylglycerol, and diphosphatidylglycerol. Terrestrial and freshwater bacteria having a preference for mesophilic to moderately thermophilic habitats and neutral pH. DNA G + C content (mol%): 67.2–70.4. Type species: Rhodoplanes roseus Hiraishi and Ueda 1994 (Rhodopseudomonas rosea Janssen and Harfoot 1991).

Description: Rho.do.pi'la. Gr. neut. n. rhodon the rose; N.L. fem. n. pila a ball or sphere; N.L. fem. n. Rhodopila red sphere. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Acetobacteraceae / Rhodopila Rhodopila globiformis is one of the very few anaerobic phototrophic purple bacteria that can grow below pH 6 with an optimum depending on the organic carbon substrate from 4.8 to 5.6. Growth occurs preferably photoheterotrophically under anoxic conditions in the light. Cells are sensitive to oxygen but grow by respiration under microoxic conditions in the dark. Growth factors are required. They are acidophilic freshwater bacteria that inhabit acidic warm sulfur springs. Cells are spherical to ovoid, motile by means of polar flagella, and divide by binary fission. They stain Gram-negative and have internal photosynthetic membranes of the vesicular type. Rhodopila is classified within the Acetobacteraceae family and Rhodospirillales order of the Alphaproteobacteria. The photosynthetic pigments are bacteriochlorophyll a and carotenoids. The major fatty acids are C18:1 (∼75%) and C16:0. Ubiquinones, menaquinones, and rhodoquinones with 9 and 10 isoprene units are produced. DNA G + C content (mol%): 67.1 (genome analysis). Type species: Rhodopila globiformis Imhoff et al. 1984VP (basonym: Rhodopseudomonas globiformis Pfennig 1974AL).

Description: Rho.do.spi.ril'lum. Gr. neut. n. rhodon, the rose; N.L. neut. n. Spirillum, a bacterial genus; N.L. neut. n. Rhodospirillum, the rose Spirillum. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Rhodospirillaceae / Rhodospirillum The genus Rhodospirillum has harbored a diverse set of spiral-shaped phototrophic bacteria, most of which have been reclassified as species of other genera, families, and even orders and phyla since the 1980s. The heterogeneity has been long known, but only the faith into sequence-based information gave strong support for taxonomic rearrangements. Currently, the genus Rhodospirillum contains a single species, which is characterized by spiral-shaped cells, motility by bipolar flagella, and internal membranes as vesicles. It performs anaerobic photosynthesis, which is restricted to anoxic light conditions due to the oxygen-sensitive biosynthesis of bacteriochlorophyll and thus the phototrophic apparatus. It can grow photoheterotrophically as well as photoautotrophically. The key enzyme of autotrophic carbon dioxide fixation in Rhodospirillum rubrum, ribulose bisphosphate carboxylase (RubisCO) type-II, is well characterized and forms a homodimer that is also encoded in some related genera of Rhodospirillaceae. Chemotrophic growth may also occur under microoxic to oxic conditions in the dark and anaerobically by fermentation. The genus comprises mesophilic freshwater bacteria. Ubiquinones and rhodoquinones with 10 isoprene units and fatty acids typical of other Alphaproteobacteria with C18:1, C16:0, and C16:1 as major components are present. DNA G + C content (mol%): 64.6–65.7, type 65.4 (genome analysis), 63.8–65.8 (Bd). Type species: Rhodospirillum (Rsp.) rubrum Molisch 1907AL (basonym: Spirillum rubrum Esmarch 1887).

Description: Rho.do.ci'sta Gr. neut. n. rhodon, rose; L. fem. n. cista a basket; N.L. fem. n. Rhodocista, red basket. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Azospirillaceae / Rhodocista Rhodocista centenaria is a well-characterized thermotolerant, phototrophic purple bacterium growing optimally at a temperature of 40–45°C and a maximal growth temperature of 48°C. Under low nutrient conditions, Rhodocista forms desiccation-, heat-, and UV-resistant cysts, which enable survival under severe drought and salt stress. Cells are motile by a single polar flagellum in liquid culture but in addition form lateral flagella on agar surfaces and under these conditions may show a characteristic phototactic movement. Rhodocista species grow under photoheterotrophic conditions and also are able to perform a chemotrophic aerobic metabolism. They encode enzymes for autotrophic carbon dioxide fixation and fixation of dinitrogen, although autotrophic growth has so far not been demonstrated. In the type species, bacteriochlorophyll biosynthesis occurs under both aerobic and anaerobic growth conditions. Aerobically grown cells are fully pigmented. In other species, oxygen may inhibit photosynthetic pigment biosynthesis, and aerobically grown cells are colorless. DNA G + C content (mol%): 68.8–69.9 (Tm), 70.5 (WGS). Type species: Rhodocista (Rcs.) centenaria Kawasaki et al. 1992, VL48 (basonym: Rhodospirillum centenum Favinger et al. 1989, VL48).

Description: Rho.do.tha.las.si.a.ce'ae. N.L. neut. n. Rhodothalassium, type genus of the family; suff. -aceae, ending to denote a family; N.L. fem. pl. n. Rhodothalassiaceae, the family of Rhodothalassium. Proteobacteria / Alphaproteobacteria / Rhodothalassiales / Rhodothalassiaceae Cells are vibrioid to spiral shaped, are motile by means of polar flagella, and multiply by binary fission. They belong to the class Alphaproteobacteria and stain Gram-negative. An unusual protein-rich cell wall with only low amounts of peptidoglycan may be present. Internal photosynthetic membranes are present as lamellar stacks lying parallel to the cytoplasmic membrane. The photosynthetic pigments are bacteriochlorophyll a and carotenoids. The major ubiquinone and menaquinone components are Q-10 and MK-10. Growth occurs preferably photoheterotrophically under anoxic conditions in the light but also may be possible under microoxic to oxic conditions in the dark. Obligately halophilic bacteria that require NaCl or sea salt for growth. Habitats are anoxic zones of hypersaline environments such as salterns, salt lakes, and evaporated coastal lagoons that are exposed to light. At present, the family includes a single genus. DNA G + C content of the type species and genus (mol%): 68.5–69.0 (genome analysis), 60.0–62.8 (HPLC analysis). Type genus: Rhodothalassium Imhoff et al. 1998VP.

Description: Phae.o.spi.ril'lum. Gr. masc. adj. phaeos, brown; N.L. neut. n. Spirillum, a bacterial genus; N.L. neut. n. Phaeospirillum, brown Spirillum. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Rhodospirillaceae / Phaeospirillum Phaeospirillum species are vibrioid to spiral shaped and motile Alphaproteobacteria. They are strictly anaerobic and anoxygenic phototrophic bacteria with a reaction center and light-harvesting complexes located in the internal membrane stacks formed at a sharp angle with the cytoplasmic membrane. The photosynthetic pigments are bacteriochlorophyll a esterified with phytol and carotenoids of the spirilloxanthin series, with spirilloxanthin itself lacking. They have a photoheterotrophic metabolism and depend on anoxic conditions for biosynthesis of bacteriochlorophyll and photosynthesis. The preferred carbon substrates are fatty acids including longer chains up to pelargonate. The longer chain fatty acids provide a selective advantage for several of the species. Chemotrophic growth may be possible at controlled and very low oxygen tensions (〈1.5 kPa) in the dark. Ammonia and dinitrogen serve as nitrogen sources. Assimilatory sulfate reduction is present. Growth factors may be required. Phaeospirillum species are mesophilic freshwater bacteria with a preference for neutral pH that live in stagnant and anoxic freshwater habitats. DNA G + C content (mol%): 60.5–65.3 (Bd), 62.1–62.8 (Tm), 61.5–64.7 (WGS). Type species: Phaeospirillum (Phs.) fulvum Imhoff et al. 1998VP (basonym: Rhodospirillum fulvum van Niel 1944AL).

Description: Rho.do.tha.las.si.a'les. N.L. neut. n. Rhodothalassium, type genus of the order; suff. -ales, ending denoting an order; N.L. fem. pl. n. Rhodothalassiales, the Rhodothalassium order. Proteobacteria / Alphaproteobacteria / Rhodothalassiales The order currently comprises a single family and genus, which is characterized by halophilic anoxygenic phototrophic bacteria having spiral-shaped cells and containing lamellar photosynthetic membranes. The properties of the order are determined by the characteristics of the Rhodothalassiaceae family.

Description: Rho.do.tha.las'si.um. Gr. neut. n. rhodon, the rose; Gr. masc. adj. thalassios, belonging to the sea; N.L. neut. n. Rhodothalassium, the rose belonging to the sea. Proteobacteria / Alphaproteobacteria / Rhodothalassiales / Rhodothalassiaceae / Rhodothalassium The genus Rhodothalassium is represented by a single species and is the only genus of the Rhodothalassiaceae family and Rhodothalassiales order. It is characterized by vibrioid- to spiral-shaped cells which multiply by binary fission and are motile by means of flagella. Internal photosynthetic membranes are present as lamellar stacks lying parallel to the cytoplasmic membrane. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series. Ubiquinones and menaquinones with 10 isoprene units (Q-10 and MK-10) are present. Growth occurs preferably photoheterotrophically under anoxic conditions in the light. Most strains also grow chemoorganotrophically under oxic conditions in the dark. Rhodothalassium species are obligately halophilic, require NaCl or sea salt for growth, and live in anoxic zones of hypersaline environments such as salterns, salt lakes, and evaporated coastal lagoons that are exposed to the light. DNA G + C content (mol%): 68.5–69.0 (WGS), 60.0–62.8 (HPLC). Type species: Rhodothalassium salexigens Imhoff et al. 1998VP (basonym: Rhodospirillum salexigens Drews 1981, VL9).

Description: Rho.do.pla'nes. Gr. neut. n. rhodon rose; Gr. masc. n. planos a wanderer; N.L. masc. n. Rhodoplanes a red wanderer. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Rhodoplanes The genus Rhodoplanes accommodates species of anoxygenic facultative phototrophic bacteria that grow optimally under anaerobic conditions in the light. They belong to the family Hyphomicrobiaceae of the order Rhizobiales within the class Alphaproteobacteria. Cells are Gram-stain-negative rods and multiply by budding and asymmetric cell division. Motile by means of polar, subpolar, or lateral flagella. Internal photosynthetic membranes are present as lamellar stacks parallel to the cytoplasmic membrane. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series. Photoorganotrophy with pyruvate and some other organic acids is the best mode of growth. Straight-chain, monounsaturated C18:1 ω7c is the main component of the cellular fatty acids and C16:0 is a second major component. Ubiquinones and rhodoquinones with 10 isoprene units (Q-10 and RQ-10) are present. The main components of polar lipids are phosphatidylethanolamine, phosphatidylcholine, phosphatidylglycerol, and diphosphatidylglycerol. Terrestrial and freshwater bacteria having a preference for mesophilic to moderately thermophilic habitats and neutral pH. DNA G + C content (mol%): 67.2–70.4. Type species: Rhodoplanes roseus Hiraishi and Ueda 1994 (Rhodopseudomonas rosea Janssen and Harfoot 1991).

Description: Pa.ra.rho.do.spi.ril'lum. Gr. pref. para-, beside, alongside of, near, like; N.L. neut. n. Rhodospirillum, a bacterial generic name; N.L. neut. n. Pararhodospirillum, resembling Rhodospirillum. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Rhodospirillaceae / Pararhodospirillum Pararhodospirillum species are spiral-shaped, mesophilic, and phototrophic freshwater bacteria of the Rhodospirillaceae family. Cells are motile by polar flagella, and photosynthetic pigments are located in internal photosynthetic membranes present as lamellar stacks. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series with spirilloxanthin itself lacking. Ubiquinone-9 and rhodoquinone-9 are the major quinones. All species are sensitive to oxygen and require anoxic or microoxic conditions for growth. They grow photoheterotrophically under anoxic conditions in the light. Photoautotrophic growth, aerobic chemotrophic growth, and fermentative growth have not been demonstrated. Growth factors are required. DNA G + C content (mol%): 60.2–65.8 (Bd and HPLC) and 64.7–67 (GA). Type species: Pararhodospirillum photometricum Lakshmi et al. 2014VP (basonym: Rhodospirillum photometricum Molisch 1907AL).

Description: Ro.se.o.spi'ra. L. masc. adj. roseus, rosy; Gr. fem. n. spira, the spiral; N.L. fem. n. Roseospira the rosy spiral. Proteobacteria / Alphaproteobacteria / Rhodospirillales / Rhodospirillaceae / Roseospira Roseospira species are vibrioid to spiral shaped, anoxygenic, and phototrophic bacteria of the Rhodospirillaceae family that live in various types of marine and slightly saline habitats all over the world. The photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series, and internal photosynthetic membranes are present as vesicles. They perform a phototrophic way of life using organic substrates (photoheterotrophic growth) or inorganic reduced sulfur compounds (photoautotrophic growth) as electron donors for photosynthesis. Bacteriochlorophyll biosynthesis depends on anoxic to microoxic conditions, and chemotrophic growth is possible under microoxic to oxic conditions in the light. Nitrogenase and ribulose bisphosphate carboxylase may be present. Vitamins or yeast extracts are required as growth factors. The G + C content of the DNA is 67.8–71.2 (GA), and the genome size ranges from 4.19 to 4.61 Mb. DNA G + C content (mol%): 67.8–71.2 (GA) (type species 66.6 Tm). Type species: Roseospira mediosalina Imhoff et al. 1998VP (synonym: “Rhodospirillum mediosalinum” Kompantseva and Gorlenko 1984).

Description: It is a good method to utilize the grain size distribution curves and cumulative frequency curves of marine or river sediments to estimate the hydrodynamic conditions, transportation processes and sedimentary environment. However, researchers can only rely on Excel or Grapher to plot the curves one by one at the present day. The manual plotting procedures are complicated, and calculating the truncation points is time-consuming. To solve the aforementioned problems, we have developed a software tool to plot cumulative frequency curves and calculate the values of truncation points automatically. The software has the ability to plot curves of hundreds of samples accurately and rapidly, promoting researchers to analyze transport mechanisms and hydrodynamic environments. And it is convenient to apply the software to compare the processes of transportation and deposition between different samples.

Description: Rho.do.mi.cro' bi.um. Gr. neut. n. rhodon the rose; Gr. masc. adj. micros small; Gr. masc. n. bios life; N.L. neut. n. Rhodomicrobium red microbe. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Rhodomicrobium Most characteristic for Rhodomicrobium species is the polar cell growth and the characteristic vegetative growth cycle which includes the formation of peritrichously flagellated swarmer cells and nonmotile “mother cells,” which form prosthecae from one to several times the length of the mother cell. Daughter cells originate as spherical buds at the end of the prosthecae and may undergo differentiation in various ways. They are Gram-negative ovoid to elongate-ovoid bacteria belonging to the Alphaproteobacteria. Internal photosynthetic membranes are of the lamellar type. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series. The predominant cellular fatty acid is C18:1, which comprises more than 80% of the membrane-bound fatty acids. Ubiquinone and rhodoquinone with 10 isoprene units are present, and the lipopolysaccharides are characterized by a glucosamine-containing, phosphate-free lipid A with amide-bound C16:0 3 OH. DNA G + C content (mol%): 61.8–63.8. Type species: Rhodomicrobium vannielii Duchow and Douglas 1949.

Description: Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Blas.to.chlo'ris. Gr. masc. n. blastos bud shoot; Gr. masc. adj. chloros green; N.L. fem. n. Blastochloris green bud shoot. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Blastochloris Blastochloris species are anoxygenic phototrophic Alphaproteobacteria that have bacteriochlorophyll b in their photosynthetic reaction centers. Crystals of the photosynthetic reaction centers of Blastochloris viridis were the first that have been studied in high-resolution structure analysis at 3 Å resolution. Internal photosynthetic membranes are present as lamellae underlying and parallel to the cytoplasmic membrane. Cells are rod shaped to ovoid and exhibit polar growth, budding, and asymmetric cell division and form rosette-like cell aggregates. They are motile by means of subpolar flagella and stain Gram-negative. Straight-chain monounsaturated C18:1 is the predominant component of cellular fatty acids. Ubiquinones and menaquinones are present, and the lipopolysaccharides are characterized by a 2,3-diamino-2,3-deoxy-d-glucose (DAG)-containing, phosphate-free lipid A with amide-bound C14:0 3OH. DNA G + C content (mol%): 63.8–68.3. Type species: Blastochloris viridis (Drews and Giesbrecht 1966) Hiraishi 1997 (Rhodopseudomonas viridis Drews and Giesbrecht 1966).

Description: Rho.do.mi.cro' bi.um. Gr. neut. n. rhodon the rose; Gr. masc. adj. micros small; Gr. masc. n. bios life; N.L. neut. n. Rhodomicrobium red microbe. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Rhodomicrobium Most characteristic for Rhodomicrobium species is the polar cell growth and the characteristic vegetative growth cycle which includes the formation of peritrichously flagellated swarmer cells and nonmotile “mother cells,” which form prosthecae from one to several times the length of the mother cell. Daughter cells originate as spherical buds at the end of the prosthecae and may undergo differentiation in various ways. They are Gram‐negative ovoid to elongate‐ovoid bacteria belonging to the Alphaproteobacteria. Internal photosynthetic membranes are of the lamellar type. Photosynthetic pigments are bacteriochlorophyll a and carotenoids of the spirilloxanthin series. The predominant cellular fatty acid is C18:1, which comprises more than 80% of the membrane‐bound fatty acids. Ubiquinone and rhodoquinone with 10 isoprene units are present, and the lipopolysaccharides are characterized by a glucosamine‐containing, phosphate‐free lipid A with amide‐bound C16:0 3 OH. DNA G + C content (mol%): 61.8–63.8. Type species: Rhodomicrobium vannielii Duchow and Douglas 1949.

Description: In times of accelerating climate change, species are challenged to respond to rapidly shifting environmental settings. Yet, faunal distribution and composition are still scarcely known for remote and little explored seas, where observations are limited in number and mostly refer to local scales. Here, we present the first comprehensive study on Eurasian-Arctic macrobenthos that aims to unravel the relative influence of distinct spatial scales and environmental factors in determining their large-scale distribution and composition patterns. To consider the spatial structure of benthic distribution patterns in response to environmental forcing, we applied Moran’s eigenvector mapping (MEM) on a large dataset of 341 samples from the Barents, Kara and Laptev Seas taken between 1991 and 2014, with a total of 403 macrobenthic taxa (species or genera) that were present in ≥ 10 samples. MEM analysis revealed three spatial scales describing patterns within or beyond single seas (broad: ≥ 400 km, meso: 100–400 km, and small: ≤ 100 km). Each scale is associated with a characteristic benthic fauna and environmental drivers (broad: apparent oxygen utilization and phosphate, meso: distance-to-shoreline and temperature, small: organic carbon flux and distance-to-shoreline). Our results suggest that different environmental factors determine the variation of Eurasian-Arctic benthic community composition within the spatial scales considered and highlight the importance of considering the diverse spatial structure of species communities in marine ecosystems. This multiple-scale approach facilitates an enhanced understanding of the impact of climate-driven environmental changes that is necessary for developing appropriate management strategies for the conservation and sustainable utilization of Arctic marine systems.

Description: The availability of dissolved iron (dFe) exerts an important control on primary production. Recent ocean observation programs have provided information on dFe in many parts of the ocean, but knowledge is still limited concerning the rates of processes that control the concentrations and cycling of dFe in the ocean and hence the role of dFe as a determinant of global primary production. We constructed a three-dimensional gridded dataset of oceanic dFe concentrations by using both observations and a simple model of the iron cycle, and estimated the difference of processes among the ocean basins in controlling the dFe distributions. A Green's function approach was used to integrate the observations and the model. The reproduced three-dimensional dFe distribution indicated that iron influx from aeolian dust and from shelf sediment were 7.6 Gmol yr and 4.4 Gmol yr in the Atlantic Ocean and 0.4 Gmol yr and 4.1 Gmol yr in the Pacific Ocean. The residence times were estimated to be 12.2 years in the Atlantic and 80.4 years in the Pacific. These estimates imply large differences in the cycling of dFe between the two ocean basins that would need to be taken into consideration when projecting future iron biogeochemical cycling under different climate change scenarios. Although there is some uncertainty in our estimates, global estimates of iron cycle characteristics based on this approach can be expected to enhance our understanding of the material cycle and hence of the current and future rates of marine primary production.

Description: Using a portable gas analyzer system, the geogenic gas regime below and around an ancient gate to hell at Hierapolis/Phrygia was characterized. The site was first described by Strabo and Plinius as a gate to the underworld. During centuries, it attracted even ancient tourists. In a grotto below the temple of Pluto, CO2 was found to be at deadly concentrations of up to 91%. Astonishingly, these vapors are still emitted in concentrations that nowadays kill insects, birds, and mammals. The concentrations of CO2 escaping from the mouth of the grotto to the outside atmosphere are still in the range of 4–53% CO2 depending on the height above ground level. They reach concentrations during the night that would easily kill even a human being within a minute. These emissions are thought to reflect the Hadean breath and/or the breath of the hellhound Kerberos guarding the entrance to hell. The origin of the geogenic CO2 is the still active seismic structure that crosses the old town of ancient Hierapolis as part of the Babadag fracture zone. Our measurements confirm the presence of geogenic CO2 in concentrations that explain ancient stories of killed bulls, rams, and songbirds during religious ceremonies. They also strongly corroborate that at least in the case of Hierapolis, ancient writers like Strabo or Plinius described a mystic phenomenon very exactly without much exaggeration. Two thousand years ago, only supernatural forces could explain these phenomena from Hadean depths whereas nowadays, modern techniques hint to the well-known phenomenon of geogenic CO2 degassing having mantle components with relatively higher helium and radon concentrations.

Description: Continental rifting and ocean basin formation can be observed at the present day in the Red Sea, which is used as the modern analogue for the formation of mid-ocean ridges. Competing theories for how spreading begins—either by quasi-instantaneous formation of a whole spreading segment or by initiation of spreading at multiple discrete “nodes” separated by thinned continental lithosphere—have been put forward based, until recently, on the observations that many seafloor features and geophysical anomalies (gravity, magnetics) along the axis of the Red Sea appeared anomalous compared to ancient and modern examples of ocean basins in other parts of the world. The latest research shows, however, that most of the differences between the Red Sea Rift (RSR) and other (ultra)slow-spreading mid-ocean ridges can be related to its relatively young age and the presence and movement of giant submarine salt flows that blanket large portions of the rift valley. In addition, the geophysical data that was previously used to support the presence of continental crust between the axial basins with outcropping oceanic crust (formerly named “spreading nodes”) can be equally well explained by processes related to the sedimentary blanketing and hydrothermal alteration. The observed spreading nodes are not separated from one another by tectonic boundaries but rather represent “windows” onto a continuous spreading axis which is locally inundated and masked by massive slumping of sediments or evaporites from the rift flanks. Volcanic and tectonic morphologies are comparable to those observed along slow and ultra-slow spreading ridges elsewhere and regional systematics of volcanic occurrences are related to variations in volcanic activity and mantle heat flow. Melt-salt interaction due to salt flows, that locally cover the active spreading segments, and the absence of large detachment faults as a result of the nearby Afar plume are unique features of the RSR. The differences and anomalies seen in the Red Sea still may be applicable to all young oceanic rifts, associated with plumes and/or evaporites, which makes the Red Sea a unique but highly relevant type example for the initiation of slow rifting and seafloor spreading and one of the most interesting targets for future ocean research.

Description: Coral reefs in the Red Sea belong to the most diverse and productive reef ecosystems worldwide, although they are exposed to strong seasonal variability, high temperature, and high salinity. These factors are considered stressful for coral reef biota and challenge reef growth in other oceans, but coral reefs in the Red Sea thrive despite these challenges. In the central Red Sea high temperatures, high salinities, and low dissolved oxygen on the one hand reflect conditions that are predicted for ‘future oceans’ under global warming. On the other hand, alkalinity and other carbonate chemistry parameters are considered favourable for coral growth. In coral reefs of the central Red Sea, temperature and salinity follow a seasonal cycle, while chlorophyll and inorganic nutrients mostly vary spatially, and dissolved oxygen and pH fluctuate on the scale of hours to days. Within these strong environmental gradients micro- and macroscopic reef communities are dynamic and demonstrate plasticity and acclimatisation potential. Epilithic biofilm communities of bacteria and algae, crucial for the recruitment of reef-builders, undergo seasonal community shifts that are mainly driven by changes in temperature, salinity, and dissolved oxygen. These variables are predicted to change with the progression of global environmental change and suggest an immediate effect of climate change on the microbial community composition of biofilms. Corals are so-called holobionts and associate with a variety of microbial organisms that fulfill important functions in coral health and productivity. For instance, coral-associated bacterial communities are more specific and less diverse than those of marine biofilms, and in many coral species in the central Red Sea they are dominated by bacteria from the genus Endozoicomonas. Generally, coral microbiomes align with ecological differences between reef sites. They are similar at sites where these corals are abundant and successful. Coral microbiomes reveal a measurable footprint of anthropogenic influence at polluted sites. Coral-associated communities of endosymbiotic dinoflagellates in central Red Sea corals are dominated by Symbiodinium from clade C. Some corals harbour the same specific symbiont with a high physiological plasticity throughout their distribution range, while others maintain a more flexible association with varying symbionts of high physiological specificity over depths, seasons, or reef locations. The coral-Symbiodinium endosymbiosis drives calcification of the coral skeleton, which is a key process that provides maintenance and formation of the reef framework. Calcification rates and reef growth are not higher than in other coral reef regions, despite the beneficial carbonate chemistry in the central Red Sea. This may be related to the comparatively high temperatures, as indicated by reduced summer calcification and long-term slowing of growth rates that correlate with ocean warming trends. Indeed, thermal limits of abundant coral species in the central Red Sea may have been exceeded, as evidenced by repeated mass bleaching events during previous years. Recent comprehensive baseline data from central Red Sea reefs allow for insight into coral reef functioning and for quantification of the impacts of environmental change in the region.

Description: The Laptev and Eastern Siberian shelves are the world’s broadest shallow shelf systems. Large Siberian rivers and coastal erosion of up to meters per summer deliver large volumes of terrestrial matter into the Arctic shelf seas. In this chapter we investigate the applicability of Ocean Colour Remote Sensing during the ice-free summer season in the Siberian Laptev Sea region. We show that the early summer river peak discharge may be traced using remote sensing in years characterized by early sea-ice retreat. In the summer time after the peak discharge, the spreading of the main Lena River plume east and north-east of the Lena River Delta into the shelf system becomes hardly traceable using optical remote sensing methods. Measurements of suspended particulate matter (SPM) and coloured dissolved organic matter (cDOM) are of the same magnitude in the coastal waters of Buor Khaya Bay as in the Lena River. Match-up analyses of in situ chlorophyll-a (Chl-a) show that standard Medium Resolution Imaging Spectrometer (MERIS) and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite-derived Chl-a is not a valid remote sensing product for the coastal waters and the inner shelf region of the Laptev Sea. All MERIS and MODIS-derived Chl-a products are overestimated by at least a factor of ten, probably due to absorption by the extraordinarily high amount of non-algal particles and cDOM in these coastal and inner-shelf waters. Instead, Ocean Colour remote sensing provides information on wide-spread resuspension over shallows and lateral advection visible in satellite-derived turbidity. Satellite Sea Surface Temperature (SST) data clearly show hydrodynamics and delineate the outflow of the Lena River for hundreds of kilometres out into the shelf seas.

Description: The size of current plankton image datasets renders manual classification virtually infeasible. The training of models for machine classification is complicated by the fact that a large number of classes consist of only a few examples. We employ the recently introduced weight imprinting technique in order to use the available training data to train accurate classifiers in absence of enough examples for some classes. The model architecture used in this work succeeds in the identification of plankton using machine learning with its unique challenges, i.e. a limited number of training examples and a severely skewed class size distribution. Weight imprinting enables a neural network to recognize small classes immediately without re-training. This permits the mining of examples for novel classes.

Description: The Alpine orogeny is well recorded onshore and offshore by tectonic inversion of the Mesozoic rift basins. Large scale linear seamounts (more than 250 km long and with up to 5 km of uplift) involving oceanic and continental lithosphere were carried on top of thrusts, such as the Gorringe seamount and the Estremadura Spur in the SouthWest and West Iberia Margin, respectively. The SouthWest Iberia Margin also recorded the westward migration of the Gibraltar Oceanic slab as the westwards propagation of the Neo-Tethys subduction. Rotation of the tectonic compression from NW-SE to WNW-ESE inPliocene times caused the development of large scale dextral wrench faults as the present day Africa-Iberia plate boundary. Neotectonics of this plate boundary caused large to mega-scale destructive earthquakes and tsunamis.

Description: Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous sediments) to predict where hydrothermal venting or now inactive hydrothermal vent fields can be expected. Sites of particular interest for future hydrothermal research are the Mabahiss Deep, the Thetis-HadarbaHatiba Deeps and Shagara-Aswad-Erba Deeps (especially their large axial domes), and Poseidon Deep. Older hydrothermal vent fields may be present at the Nereus and Suakin Deeps. These sites significantly increase the potential of hydrothermal vent field prospection in the Red Sea.

Description: The deep-sea brines of the Red Sea are unusual extreme environments and form characteristically steep gradients across the brine-seawater interfaces. Due to their unusual nature and unique combination of physical-chemical conditions these interfaces provide an interesting source of new findings in the fields of geochemistry, geology, microbiology, biotechnology, virology, and general biology. The current chapter summarizes recent and new results in the study of geochemistry and life at the interfaces of brine-filled deeps of the Red Sea.

Description: This paper addresses visual navigation of autonomous underwater vehicles (AUVs) with and without a given map, where the latter is called Simultaneous Localization and Mapping (SLAM). We summarize the challenges and opportunities in underwater environments that make visual navigation different from land navigation and also briefly survey the current state-of-the-art in this area. Then as a position paper we argue why many of these challenges could be met by a proper modeling of uncertainties in the SLAM representation. This would in particular allow the SLAM algorithm to thoroughly handle the ambiguity between “I see the same feature again.”, “I see a different but similar looking feature.” and “The environment has changed and the feature moved.”.

Description: Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available. © 2018 International Society of Protistologists

Description: Spores of the dinoflagellate Chytriodinium are known to infest copepod eggs causing their lethality. Despite the potential to control the population of such an ecologically important host, knowledge about Chytriodinium parasites is limited: we know little about phylogeny, parasitism, abundance, or geographical distribution. We carried out genome sequence surveys on four manually isolated sporocytes from the same sporangium, which seemed to be attached to a copepod nauplius, to analyze the phylogenetic position of Chytriodinium based on SSU and concatenated SSU/LSU rRNA gene sequences, and also characterize two genes related to the plastidial heme pathway, hemL and hemY. The results suggest the presence of a cryptic plastid in Chytriodinium and a photosynthetic ancestral state of the parasitic Chytriodinium/Dissodinium clade. Finally, by mapping Tara Oceans V9 SSU amplicon data to the recovered SSU rRNA gene sequences from the sporocytes, we show that globally, Chytriodinium parasites are most abundant within the pico/nano- and mesoplankton of the surface ocean and almost absent within microplankton, a distribution indicating that they generally exist either as free-living spores or host-associated sporangia. © 2018 International Society of Protistologists

Description: The application of acoustic techniques, such as multibeam echosounders, has permitted the identification of Maltese submarine landscapes and landforms that were progressively inundated during the postglacial sea-level rise. Remarkably, geomorphological features due to fluvial, gravity-induced and karst processes that took place under former subaerial conditions can be clearly recognised on the present seafloor around the Maltese archipelago, and they were only slightly modified by sea action during the postglacial transgression phases. The analysis of the submerged landforms described in this chapter is crucial for understanding the evolution of the Maltese Islands during the last ca. 20,000 years.

Description: The study presents the results of continuous measurements of carbon dioxide concentration in the atmospheric surface layer at Tiksi and Cape Baranov Arctic stations over the period of August 2010–May 2017 and over the whole 2016, respectively. The amplitude of diurnal variations in the CO2 concentration in Tiksi from June to September is 1.1 ± 1.3, 2.4 ± 2.0, 4.1 ± 2.3, and 2.0 ± 2.4 ppm. Diurnal variations in CO2 at Cape Baranov station are absent. The observed seasonal variations in the CO2 concentration are compared with the data of the MBL empirical model for the marine atmospheric boundary layer of the Arctic region. In 2016, the difference between the observed and model concentrations at Tiksi and Cape Baranov stations amounted to 1.7 and 0.5 ppm, respectively, in winter and −3.0 and −1.9 ppm, respectively, in summer. It is shown that wildfires in Siberia caused a long synchronous increase in the CO2 concentration by 20 ppm in Tiksi and by 15 ppm at Cape Baranov station.

Description: The water of Atlantic origin (Atlantic water) is of special importance for the formation of the hydrological regime of the Arctic Ocean and provides a “building material” for the main water masses in the surface and intermediate layers. Atlantic water are structurally included to the Arctic Transpolar System (ATS); it is a multicomponent physical object whose state defines the role of the Arctic Ocean in the planetary climate. The recent advances in the Atlantic water research are discussed, in particular, the role of Atlantic water in the Arctic sea ice reduction. Particular attention is paid to the possible activation of feedbacks in ATS that may result in an accelerated Arctic sea ice loss recorded after 2007.

Description: Three most common Arctic foraminiferal species of the family Cassidulinidae from the Laptev Sea sediment cores were analyzed for paleoenvironmental reconstructions. This paleontological study is focused on morphological characteristics of apertural elements and the wall structure. The species Cassidulina neoteretis is considered an indicator of the Atlantic influence in contrast to the Arctic species Cassidulina reniforme and Islandiella norcrossi.

Description: The ecology and taxonomy of Islandiella norcrossi (Cushman, 1933), a typical representative of the Arctic calcareous benthic foraminifers, are analyzed based on microfossils from the Late Pleistocene-Holocene deposits of the Laptev Sea. This species is distributed on the shelf and continental slope of the Arctic seas, and indicates normal marine conditions with a seasonal ice cover and cold Arctic water masses. The species is also associated with a high seasonal productivity in sea-ice marginal zone. Tests are abundant in the Laptev Sea sediments, and show some variability in the size and shape of chambers, which was possibly caused by harsh environmental conditions of the Arctic (limited period of growth and reproduction); aberrant forms with an additional aperture being also present. The population contains tests of macrospherical and microspherical generations, as well as juveniles.

Description: Dome ports act as spherical windows in underwater housings through which a camera can observe objects in the water. As compared to flat glass interfaces, they do not limit the field of view, and they do not cause refraction of light observed by a pinhole camera positioned exactly in the center of the dome. Mechanically adjusting a real lens to this position is a challenging task, in particular for those integrated in deep sea housings. In this contribution a mechanical adjustment procedure based on straight line observations above and below water is proposed that allows for accurate alignments. Additionally, we show a chessboard-based method employing an underwater/above-water image pair to estimate potentially remaining offsets from the dome center to allow refraction correction in photogrammetric applications. Besides providing intuition about the severity of refraction in certain settings, we demonstrate the methods on real data for acrylic and glass domes in the water.

Description: Heteroplasmy occurs when copies of an organellar genome (plastid or mitochondrial) differ from one another either within a cell or among cells within an individual. This phenomenon was first discovered in plastids over 100 years ago, though ‘heteroplasmy’ was not formally defined until decades later. Mitochondrial and plastid heteroplasmy have since been discovered in diverse taxa, including numerous plants, particularly those with the gynodioecious breeding system. Though heteroplasmy can arise through mutations in organellar genomes, biparental inheritance of organelles often generates heteroplasmy. This article is intended to summarise the cytoploid nature of organellar genomes and different aspects of mitochondrial and plastid heteroplasmy, from its discovery, to the development of detection methods. We will also discuss the effects of heteroplasmy on individuals, populations, and species, with regard to fitness, cytonuclear interactions, and genome evolution. Finally, we highlight a few research questions which we consider in need of further investigation to understand the prevalence and effects of heteroplasmy in natural settings.

Description: We discuss the results of measurements in the region of Cape Baranov (the Severnaya Zemlya archipelago) of the set of physicochemical characteristics of atmospheric aerosol: aerosol optical depth, aerosol and black carbon concentrations, elemental and ion compositions of aerosol, organic and elemental carbon contents in aerosol, as well as the isotopic composition of carbon in the aerosol and snow samples. It is shown that the average values of most aerosol characteristics, measured in April–June 2018, are a little lower than in the Arctic settlement Barentsburg (Spitsbergen archipelago) and several-fold smaller than in the south of Western Siberia in the same period.

Description: Plastic has become indispensable for human life. When plastic debris is discarded into waterways, these items can interact with organisms. Of particular concern are microscopic plastic particles (microplastics) which are subject to ingestion by several taxa. This review summarizes the results of cutting-edge research about the interactions between a range of aquatic species and microplastics, including effects on biota physiology and secondary ingestion. Uptake pathways via digestive or ventilatory systems are discussed, including (1) the physical penetration of microplastic particles into cellular structures, (2) leaching of chemical additives or adsorbed persistent organic pollutants (POPs), and (3) consequences of bacterial or viral microbiota contamination associated with microplastic ingestion. Following uptake, a number of individual-level effects have been observed, including reduction of feeding activities, reduced growth and reproduction through cellular modifications, and oxidative stress. Microplastic-associated effects on marine biota have become increasingly investigated with growing concerns regarding human health through trophic transfer. We argue that research on the cellular interactions with microplastics provide an understanding of their impact to the organisms’ fitness and, therefore, its ability to sustain their functional role in the ecosystem. The review summarizes information from 236 scientific publications. Of those, only 4.6% extrapolate their research of microplastic intake on individual species to the impact on ecosystem functioning. We emphasize the need for risk evaluation from organismal effects to an ecosystem level to effectively evaluate the effect of microplastic pollution on marine environments. Further studies are encouraged to investigate sublethal effects in the context of environmentally relevant microplastic pollution conditions.

Description: Stable carbon isotopes of sediment organic matter (δ13COM) are widely applied in paleoenvironmental studies. Interpretations of δ13COM, however, remain challenging and factors that influence δ13COM may not apply across all lakes. Common explanations for stratigraphic shifts in δ13COM include changes in lake productivity or changes in inputs of allochthonous OM. We investigated the influence of different oxygen conditions (oxic versus anoxic) on the δ13COM values in the sediments of Lake Tiefer See. We analysed (1) a long sediment core from the deepest part of the lake, (2) two short, sediment–water interface cores from shallower water depths, and (3) OM in the water column, i.e. from sediment traps. Fresh OM throughout the entire water column showed a relatively constant δ13COM value of approximately − 30.5‰. Similar values, about − 31‰, were obtained for well-varved sediments in both the long and short, sediment–water interface cores. In contrast, δ13COM values from non-varved sediments in all cores were significantly less negative (− 29‰). The δ13COM values in the sediment–water interface cores from different water depths differ for sediments of the same age, if oxygen conditions at the time of deposition were different at these sites, as suggested by the state of varve preservation. Sediments deposited from AD 1924 to 1980 at 62 m water depth are varved and exhibit δ13COM values around − 31‰, whereas sediments of the same age in the core from 35 m water depth are not varved and show less negative δ13COM values of about − 29‰. The relation between varve occurrence and δ13COM values suggests that δ13COM is associated with oxygen conditions because varve preservation depends on hypolimnetic anoxia. A mechanism that likely influences δ13COM is selective degradation of OM under oxic conditions, such that organic components with more negative δ13COM are preferably decomposed, leading to less negative δ13COM values in the remaining, undegraded OM pool. Greater decomposition of OM in non-varved sediments is supported by lower TOC concentrations in these deposits (~ 5%) compared to well-varved sediments (~ 15%). Even in lakes that display small variations in productivity and terrestrial OM input through time, large spatial and temporal differences in hypolimnetic oxygen concentrations may be an important factor controlling sediment δ13COM.

Description: In den tropischen und subtropischen Meeren existieren in mittleren Tiefen riesige sauerstoffarme Zonen. Im Zuge des Klimawandels dehnen sie sich immer stärker aus. Auch in Küstenregionen entstehen durch Stickstoffbelastung aus der Landwirtschaft lebensfeindliche Zonen ohne Sauerstoff – mit verheerenden Folgen für das marine Ökosystem.

Description: The invasive round goby has established a viable population within 9 years of its first introduction to Lithuanian coastal waters (SE Baltic Sea). During its expansion phase, abundances increased 23-fold, which led to the near complete eradication of its main prey, the blue mussel, at 〈 20 m depth. The round goby population showed a stabilizing trend after blue mussel biomass was depleted; however, their abundance has not declined. The round goby feeds efficiently on newly settled mollusks, causing a severe constraint for blue mussel recovery. Changes in blue mussel availability and size structure induced a dietary shift in wintering long-tailed duck towards fish prey. An energetically dense food source sustains a good body condition in long-tailed ducks, however the change in trophic position (from 3.1 to 4.3 trophic level) suggests the potential for a reduction in their carrying capacity. Results from this study also show that coastal habitats with low and unpredictable population dynamics of blue mussel become less attractive wintering sites for long-tailed duck in the Baltic Sea. We also document a cascading effect of invasive species in the food web.

Description: We introduce a new parallelizable numerical multiscale method for advection-dominated problems as they often occur in engineering and geosciences. State of the art multiscale simulation methods work well in situations in which stationary and elliptic scenarios prevail but are prone to fail when the model involves dominant lower order terms which is common in applications. We suggest to overcome the associated difficulties through a reconstruction of subgrid variations into a modified basis by solving many independent (local) inverse problems that are constructed in a semi-Lagrangian step. Globally the method looks like a Eulerian method with multiscale stabilized basis. The method is extensible to other types of Galerkin methods, higher dimensions, nonlinear problems and can potentially work with real data. We provide examples inspired by tracer transport in climate systems in one and two dimensions and numerically compare our method to standard methods.

Description: Natural polysaccharides of marine origin are gaining interest in biomedical applications. Seaweeds are most abundant source of polysaccharides, as alginates, agar and agarose as well as Carrageenans. Even cellulose and amylose have been extracted from the macroalgae. Chitin and chitosan are derived from the exoskeleton of marine crustaceans. Interdisciplinary fields involving various science and technology aspects such as cell sciences, biomaterials, medical sciences and engineering are referred to as tissue engineering, which is an upcoming new field intended to replace biological functions in human body. Tissue engineered scaffolds and artificial organs developed by such technique has replace injured parts in human body. Technological advancements have made it possible to obtain active ingredient in marine organisms by controlling the growth and isolation conditions. Present review has focused on progress in discovering and producing new applications of marine polysaccharides in biomedical and tissue engineering.

Description: Although narrow‐azimuth towed‐streamer data provides good image quality for structural interpretation, it is generally accepted that for wide‐azimuth marine surveys seabed receivers deliver superior seismic reflection measurements and seismically derived reservoir attributes. However, seabed surveys are not widely used due to the higher acquisition costs when compared to streamer acquisition. In recent years, there have been significant engineering efforts to automate receiver deployment and retrieval in order to minimize the cost differential and conduct cost‐efficient seabed receiver seismic surveys. These engineering efforts include industrially engineered nodes, nodes‐on‐a‐rope deployment schemes and even robotic nodes, which swim to and from the deployment location. This move to automation is inevitable, leading to robotization of seismic data acquisition for exploration and development activities in the oil and gas industry. We are developing a robotic‐based technology, which utilizes autonomous underwater vehicles as seismic sensors without the need of using a remotely operated vehicle for deployment and retrieval. In this paper, we describe the autonomous underwater vehicle evolution throughout the project years from initial heavy and bulky nodes to fully autonomous light and flexible underwater receivers. Results obtained from two field pilot tests using different generations of autonomous underwater vehicles indicate that the seismic coupling, and navigation based on underwater acoustics are very reliable and robust.

Description: Regional climate modeling bridges the gap between the coarse resolution of current global climate models and the regional-to-local scales, where the impacts of climate change are of primary interest. Here, we present a review of the added value of the regional climate modeling approach within the scope of paleoclimate research and discuss the current major challenges and perspectives. Two time periods serve as an example: the Holocene, including the Last Millennium, and the Last Glacial Maximum. Reviewing the existing literature reveals the benefits of regional paleo climate modeling, particularly over areas with complex terrain. However, this depends largely on the variable of interest, as the added value of regional modeling arises from a more realistic representation of physical processes and climate feedbacks compared to global climate models, and this affects different climate variables in various ways. In particular, hydrological processes have been shown to be better represented in regional models, and they can deliver more realistic meteorological data to drive ice sheet and glacier modeling. Thus, regional climate models provide a clear benefit to answer fundamental paleoclimate research questions and may be key to advance a meaningful joint interpretation of climate model and proxy data.

Description: A marine seismic method based on continuous source and receiver wavefields has been developed. The method requires continuous recording of the seismic data. The source that may consist of multiple source elements can emit signals continuously while moving. The ideal source wavefield to be used with this method should be as white as possible both in a temporal and a spatial sense to avoid deep notches in the spectrum enabling a stable multi‐dimensional deconvolution. White noise has such properties. However, equipment that can generate white noise does not exist. In order to generate a continuous source wavefield that is approaching the properties of white noise using existing equipment onboard marine seismic vessels, individual air‐guns can be triggered with short randomized time intervals in a near‐continuous fashion. The main potential benefits with the method are to reduce the environmental impact of marine seismic surveys and to improve acquisition efficiency. The peak sound pressure levels are significantly reduced by triggering one air‐gun at a time compared to conventional marine seismic sources. Sound exposure levels are also reduced in most directions. Since the method is based on continuous recording of seismic data and the air‐guns are triggered based on time and not based on position, there are less vessel speed limitations compared to conventional marine seismic data acquisition. Also, because the source wavefield is spread out in time, the wavefields emitted from source elements in different cross‐line positions can be designed such that the emitted wavefield is spatially white in this direction. This means that source elements in multiple cross‐line positions can be operated simultaneously, potentially improving the cross‐line sampling and/or the acquisition efficiency.

Description: Differences in habitat and diet between species are often associated with morphological differences. Habitat and trophic adaptation have therefore been proposed as important drivers of speciation and adaptive radiation. Importantly, habitat and diet shifts likely impose changes in exposure to different parasites and infection risk. As strong selective agents influencing survival and mate choice, parasites might play an important role in host diversification. We explore this possibility for the adaptive radiation of Lake Tanganyika (LT) cichlids. We first compare metazoan macroparasites infection levels between cichlid tribes. We then describe the cichlids’ genetic diversity at the major histocompatibility complex (MHC), which plays a key role in vertebrate immunity. Finally, we evaluate to what extent trophic ecology and morphology explain variation in infection levels and MHC, accounting for phylogenetic relationships. We show that different cichlid tribes in LT feature partially non-overlapping parasite communities and partially non-overlapping MHC diversity. While morphology explained 15% of the variation in mean parasite abundance, trophic ecology accounted for 16% and 22% of the MHC variation at the nucleotide and at the amino acid level, respectively. Parasitism and immunogenetic adaptation may thus add additional dimensions to the LT cichlid radiation.

Description: Common problems in state-of-the-art climate models are a cold sea surface temperature (SST) bias in the equatorial Pacific and the underestimation of the two most important atmospheric feedbacks operating in the El Niño/Southern Oscillation (ENSO): the positive, i.e. amplifying wind-SST feedback and the negative, i.e. damping heat flux-SST feedback. To a large extent, the underestimation of those feedbacks can be explained by the cold equatorial SST bias, which shifts the rising branch of the Pacific Walker Circulation (PWC) too far to the west by up to 30°, resulting in an erroneous convective response during ENSO events. Based on simulations from the Kiel Climate Model (KCM) and the 5th phase of Coupled Model Intercomparison Project (CMIP5), we investigate how well ENSO dynamics are simulated in case of underestimated ENSO atmospheric feedbacks (EAF), with a special focus on ocean–atmosphere coupling over the equatorial Pacific. While models featuring realistic atmospheric feedbacks simulate ENSO dynamics close to observations, models with underestimated EAF exhibit fundamental biases in ENSO dynamics. In models with too weak feedbacks, ENSO is not predominantly wind-driven as observed; instead ENSO is driven significantly by a positive shortwave radiation feedback. Thus, although these models simulate ENSO, which in terms of simple indices is consistent with observations, it originates from very different dynamics. A too weak oceanic forcing on the SST via the positive thermocline, the Ekman and the zonal advection feedback is compensated by weaker atmospheric heat flux damping. The latter is mainly caused by a biased shortwave-SST feedback that erroneously is positive in most climate models. In the most biased models, the shortwave-SST feedback contributes to the SST anomaly growth to a similar degree as the ocean circulation. Our results suggest that a broad continuum of ENSO dynamics can exist in climate models and explain why climate models with less than a half of the observed EAF strength can still depict realistic ENSO amplitude.

Description: Diseases increasingly threaten aquaculture of kelps and other seaweeds. At the same time, protection concepts that are based upon application of biocides are usually not applicable, as such compounds would be rapidly diluted in the sea, causing ecological damage. An alternative concept could be the application of immune stimulants to prevent and control diseases in farmed seaweeds. We here present a pilot study that investigated the effects of oligoalginate elicitation on juvenile and adult sporophytes of Saccharina japonica cultivated in China and on adult sporophytes of Saccharina latissima cultivated in Germany. In two consecutive years, treatment with oligoalginate clearly reduced the detachment of S. japonica juveniles from their substrate curtains during the nursery stage in greenhouse ponds. Oligoalginate elicitation also decreased the density of endobionts and the number of bacterial cells on sporophytes of S. latissima that were cultivated on sea-based rafts. However, the treatment increased the susceptibility of kelp adults to settlement of epibionts (barnacles in Germany and filamentous algal epiphytes in China). In addition, oligoalginate elicitation accelerated the aging of S. japonica adults. Based upon these findings, oligoalginate elicitation could be a feasible way to provide “environmentally friendly” protection of kelp juveniles in nurseries. The same treatment causes not only beneficial, but also unwanted effects in adult kelp sporophytes. Therefore, it is not recommended as a treatment after the juvenile stage is completed. Future tests with other elicitors and other cultivated seaweed species may allow for the development of more feasible applications of targeted defense elicitation in seaweed aquaculture.

Description: We investigate the role of the tropics, the stratosphere, and atmosphere‐ocean coupling for seasonal forecasts of strong, potentially damaging, Northern Hemisphere extratropical winter wind storm frequencies. This is done by means of relaxation experiments with the European Centre for Medium‐Range Weather Forecasts model, which allow us to prescribe perfect forecasts for specific parts of the coupled atmosphere‐ocean system. We find that perfect predictions of the Northern Hemisphere stratosphere significantly enhance winter storm predictive skill between eastern Greenland and Northern Europe. Correct seasonal predictions of the occurrence of stratospheric sudden warmings play a decisive role. The importance of correctly predicting the tropics and of two‐way atmosphere‐ocean coupling, both for forecasting stratospheric sudden warming risk and, correspondingly, severe winter storm frequency, is noted.

Description: The northern part of the South China Sea is characterized by widespread occurrence of bottom simulating reflectors (BSR) indicating the presence of marine gas hydrate. Because the area covers both a tectonically inactive passive margin and the termination of a subduction zone, the influence of tectonism on the dynamics of gas hydrate systems can be studied in this region. Geophysical data show that there are multiple thrust faults on the active margin while much fewer and smaller faults exist in the passive margin. This tectonic difference matches with a difference in the geophysical characteristics of the gas hydrate systems. High hydrate saturation derived from ocean bottom seismometer data and controlled source electromagnetic data and conspicuous high‐amplitude reflections in P‐Cable 3D seismic data above the BSR are found in the anticlinal ridges of the active margin. In contrast all geophysical evidence for the passive margin points to normal to low hydrate saturations. Geochemical analyses of gas samples collected at seep sites on the active margin show methane with heavy δ13C isotope composition, while gas collected at the passive margin shows light carbon isotope composition. Thus, we interpret the passive margin as a typical gas hydrate province fuelled by biogenic production of methane and the active margin gas hydrate system as a system that is fuelled not only by biogenic gas production but also by additional advection of thermogenic methane from the subduction system.

Description: The present study details the effects of basin-scale hydrographic characteristics of the Red Sea on the macroecology of Chaetognatha, a major plankton component in the pelagic realm. The hydrographic attributes and circulation of the Red Sea as a result of its limited connection with the northern Indian Ocean make it a unique ecohydrographic region in the world ocean. Here, we aimed to identify the prime determinants governing the community structure and vertical distribution of the Cheatognatha in this ecologically significant world ocean basin. The intrusion of Gulf of Aden Water influenced the Chaetognatha community composition in the south, whereas the overturning circulation altered their vertical distribution in the north. The existence of hypoxic waters (〈 100 µmol kg−1) at mid-depth also influenced their vertical distribution. The detailed evaluation of the responses of the different life stages of Chaetognatha revealed an increased susceptibility of adult individuals to hypoxic waters compared to immature stages. Higher oxygen demands of the adults for the egg and sperm production might have prevented them from inhabiting the oxygen-deficient mid-depth zones. The carbon and nitrogen content of the Copepoda and Chaetognatha communities and the quantification of the predation impact of Chaetognatha on Copepoda based on the feeding rate helped in corroborating the significant trophic link between these two prey–predator taxa. The observed influences of physical and chemical attributes on the distribution of Chaetognatha can be used as a model example for the role of the hydrography on the zooplankton community of the Red Sea.

Description: The mechanisms controlling the variability of oxygen levels in the ocean are poorly quantified. We focus here on the impact of wind synoptic variability associated with tropical convective regions and extra‐tropical storms. Removing the wind higher frequencies of variability (2 days – 1 month) in an atmosphere reanalysis used to force an ocean model decreases wind stress by up to 20% in the tropics and 50% in the mid‐latitudes, weakening wind‐driven ocean circulation by 20%. Oxygen levels decrease by up to 10 mmol.m‐3 in tropical oceans and 30 mmol.m‐3 in subtropical gyres mainly due to changes in advective processes. While a large part of the tropical oxygen anomaly has local origins, changes in oxygen levels in the subtropical gyres modulate tropical oxygen distribution. Our study suggests that the “storminess” of the ocean is an important parameter that could determine the future evolution of poorly oxygenated regions.

Description: The Benguela Upwelling system (BUS) is the most productive of all eastern boundary upwelling ecosystems and it hosts a well‐developed oxygen minimum zone. As such, the BUS is a potential hotspot for production of N2O, a potent greenhouse gas derived from microbially‐driven decay of sinking organic matter. Yet, the extent at which near‐surface waters emit N2O to the atmosphere in the BUS is highly uncertain. Here we present the first high‐resolution surface measurements of N2O across the northern part of the BUS (nBUS). We found strong gradients with a three‐fold increase in N2O concentrations near the coast as compared with open ocean waters. Our observations show enhanced sea‐to‐air fluxes of N2O (up to 1.67 nmol m−2 s−1) in association with local upwelling cells. Based on our data we suggest that the nBUS can account for 13% of the total coastal upwelling source of N2O to the atmosphere.

Description: Hydroxylamine (NH 2 OH), a short-lived intermediate in the nitrogen cycle, is a potential precursor of nitrous oxide (N 2 O) in the ocean. However, measurements of NH 2 OH in the ocean are sparse. Here we present a data set of depth profiles of NH 2 OH from the equatorial Atlantic Ocean and the eastern tropical South Pacific and compare it to N 2 O, nitrate, and nitrite profiles under varying oxygen conditions. The presence of NH 2 OH in surface waters points toward surface nitrification in the upper 100 m. Overall, we found a ratio of 1:3 between NH 2 OH and N 2 O in open ocean areas when oxygen concentrations were 〉50 μmol/L. In the equatorial Atlantic Ocean and the open ocean eastern tropical South Pacific, where nitrification is the dominant N 2 O production pathway, stepwise multiple regressions demonstrated that N 2 O, NH 2 OH, and nitrate concentrations were highly correlated, suggesting that NH 2 OH is a potential indicator for nitrification.

Description: As coastal areas become increasingly vulnerable to climate change, the study of nearshore sediment textures along the littoral cell of the Medjerda delta in the Gulf of Tunis, southern Mediterranean coast can provide valuable information (i) on the origin (continental or marine) of the sediment, (ii) its transport direction, and (iii) constitutes an important tool in the assessment of coastal sensitivity. A total of 120 sediments samples underwent grain size analysis and statistic parameters have been calculated. These allowed the identification of five different Sedimentary Types (ST). Accordingly, using grain size indexes (i.e. Mz, SKI and Ku), Sediment Trend Analysis (STA) modeling tools were applied to define the seasonal sediment transport pathways throughout the nearshore of the Medjerda sedimentary cell. Results show that grain size distribution (GSD) and STA model pathways are determined by cross-shore geomorphology, location of the sediment-cell, seasonal incident wave and local terrestrial supply. The appearance in an atypical seabed location of the finer (Mo = 0.1 mm) and the coarser STs (Mo = 0.8 mm) can be indicative of human influence since the coarser particles are usually retained by dam structures. Moreover, the bimodality and the increased distribution of mud are also related to the seasonal incident wave winnowing of the historic deltaic plain submerged by the relative rise in sea level. The evolution of the sediment pattern towards a greater proportion of very fine grains indicates a deficit of sediment supply, particularly of the coarser grains, and demonstrates the coastal vulnerability of the Gulf of Tunis due to anthropic effects.

Description: Radiative forcing from volcanic aerosol impacts surface temperatures; however, the background climate state also affects the response. A key question thus concerns whether constraining forcing estimates is more important than constraining initial conditions for accurate simulation and attribution of posteruption climate anomalies. Here we test whether different realistic volcanic forcing magnitudes for the 1815 Tambora eruption yield distinguishable ensemble surface temperature responses. We perform a cluster analysis on a superensemble of climate simulations including three 30-member ensembles using the same set of initial conditions but different volcanic forcings based on uncertainty estimates. Results clarify how forcing uncertainties can overwhelm initial-condition spread in boreal summer due to strong direct radiative impact, while the effect of initial conditions predominate in winter, when dynamics contribute to large ensemble spread. In our setup, current uncertainties affecting reconstruction-simulation comparisons prevent conclusions about the magnitude of the Tambora eruption and its relation to the “year without summer.”

Description: Increasing global energy demands have led to the ongoing intensification of hydrocarbon extraction from marine areas. Hydrocarbon extractive activities pose threats to native marine biodiversity, such as noise, light, and chemical pollution, physical changes to the sea floor, invasive species, and greenhouse gas emissions. Here, we assessed at a global scale the spatial overlap between offshore hydrocarbon activities and marine biodiversity (〉25,000 species, nine major ecosystems, and marine protected areas), and quantify the changes over time. We discovered that two-thirds of global offshore hydrocarbon activities occur in areas within the top 10% for species richness, range rarity, and proportional range rarity values globally. Thus, while hydrocarbon activities are undertaken in less than one percent of the ocean's area, they overlap with approximately 85% of all assessed species. Of conservation concern, 4% of species with the largest proportion of their range overlapping hydrocarbon activities are range restricted, potentially increasing their vulnerability to localized threats such as oil spills. While hydrocarbon activities have extended to greater depths since the mid-1990s, we found that the largest overlap is with coastal ecosystems, particularly estuaries, saltmarshes and mangroves. Furthermore, in most countries where offshore hydrocarbon exploration licensing blocks have been delineated, they do not overlap with marine protected areas (MPAs). Although this is positive in principle, many countries have far more licensing block areas than protected areas, and in some instances, MPA coverage is minimal. These findings suggest the need for marine spatial prioritization to help limit future spatial overlap between marine conservation priorities and hydrocarbon activities. Such prioritization can be informed by the spatial and quantitative baseline information provided here. In increasingly shared seascapes, prioritizing management actions that set both conservation and development targets could help minimize further declines of biodiversity and environmental changes at a global scale.

Description: A broad variety of materials of biological origin have been successfully used in recent decades for the removal of pollutants from waters. These biosorbents include natural polymers that play a key role for adsorption. It is therefore critical to understand the physicochemical properties of the chemical groups of these biopolymers. The acid–base properties of biomass are affected by pH, ionic strength and medium composition. Nevertheless, these parameters are not always considered during biosorption studies. According to the literature, less than 3% of biosorption reports include studies on proton binding. Moreover, in 60% of these papers, there is key experimental information missing such as the calibration of the electrodes employed for potentiometric titrations. We consider therefore that there is an important need for reviewing the role of proton binding in biosorption studies. This review outlines the major advances on data interpretation and modelling of proton binding on biosorbents. In addition, we discuss issues concerning the acid–base properties of biosorbents.

Description: Genetic data have great potential for improving fisheries management by identifying the fundamental management units—that is, the biological populations—and their mixing. However, so far, the number of practical cases of marine fisheries management using genetics has been limited. Here, we used Atlantic cod in the Baltic Sea to demonstrate the applicability of genetics to a complex management scenario involving mixing of two genetically divergent populations. Specifically, we addressed several assumptions used in the current assessment of the two populations. Through analysis of 483 single nucleotide polymorphisms (SNPs) distributed across the Atlantic cod genome, we confirmed that a model of mechanical mixing, rather than hybridization and introgression, best explained the pattern of genetic differentiation. Thus, the fishery is best monitored as a mixed-stock fishery. Next, we developed a targeted panel of 39 SNPs with high statistical power for identifying population of origin and analyzed more than 2,000 tissue samples collected between 2011 and 2015 as well as 260 otoliths collected in 2003/2004. These data provided high spatial resolution and allowed us to investigate geographical trends in mixing, to compare patterns for different life stages and to investigate temporal trends in mixing. We found similar geographical trends for the two time points represented by tissue and otolith samples and that a recently implemented geographical management separation of the two populations provided a relatively close match to their distributions. In contrast to the current assumption, we found that patterns of mixing differed between juveniles and adults, a signal likely linked to the different reproductive dynamics of the two populations. Collectively, our data confirm that genetics is an operational tool for complex fisheries management applications. We recommend focussing on developing population assessment models and fisheries management frameworks to capitalize fully on the additional information offered by genetically assisted fisheries monitoring.

Description: Prediction and Research Moored Array in the Tropical Atlantic (PIRATA) is a multinational program initiated in 1997 in the tropical Atlantic to improve our understanding and ability to predict ocean-atmosphere variability. PIRATA consists of a network of moored buoys providing meteorological and oceanographic data transmitted in real time to address fundamental scientific questions as well as societal needs. The network is maintained through dedicated yearly cruises, which allow for extensive complementary shipboard measurements and provide platforms for deployment of other components of the Tropical Atlantic Observing System. This paper describes network enhancements, scientific accomplishments and successes obtained from the last 10 years of observations, and additional results enabled by cooperation with other national and international programs. Capacity building activities and the role of PIRATA in a future Tropical Atlantic Observing System that is presently being optimized are also described.

Description: Parasites are one of the strongest selective agents in nature. They select for hosts that evolve counter‐adaptive strategies to cope with infection. Helminth parasites are special because they can modulate their hosts’ immune responses. This phenomenon is important in epidemiological contexts, where coinfections may be affected. How different types of hosts and helminths interact with each other is insufficiently investigated. We used the three‐spined stickleback (Gasterosteus aculeatus) – Schistocephalus solidus model to study mechanisms and temporal components of helminth immune modulation. Sticklebacks from two contrasting populations with either high resistance (HR) or low resistance (LR) against S. solidus, were individually exposed to S. solidus strains with characteristically high growth (HG) or low growth (LG) in G. aculeatus. We determined the susceptibility to another parasite, the eye fluke Diplostomum pseudospathaceum, and the expression of 23 key immune genes at three time points after S. solidus infection. D. pseudospathaceum infection rates and the gene expression responses depended on host and S. solidus type and changed over time. Whereas the effect of S. solidus type was not significant after three weeks, T regulatory responses and complement components were upregulated at later time points if hosts were infected with HG S. solidus. HR hosts showed a well orchestrated immune response, which was absent in LR hosts. Our results emphasize the role of regulatory T cells and the timing of specific immune responses during helminth infections. This study elucidates the importance to consider different coevolutionary trajectories and ecologies when studying host‐parasite interactions.

Description: Seafloor massive sulphide (SMS) deposits are of increasing economic interest in order to satisfy the relentless growth in worldwide metal demand. The Trans‐Atlantic Geotraverse (TAG) hydrothermal field at 26°N on the Mid‐Atlantic Ridge hosts several such deposits. This study presents new controlled source electromagnetic (CSEM), bathymetric and magnetic results from the TAG field. Potential SMS targets were selected based on their surface expressions in high‐resolution bathymetric data. High‐resolution reduced‐to‐the‐pole magnetic data show negative anomalies beneath and surrounding the SMS deposits, revealing large areas of hydrothermal alteration. CSEM data, sensitive to the electrical conductivity of SMS mineralization, further reveal a maximum thickness of up to 80 m and conductivities of up to 5 S/m. SMS samples have conductivities of up to a few thousand S/m, suggesting that remotely inferred conductivities represent an average of metal sulphide ores combined with silicified and altered host basalt that likely dominates at greater depths.

Description: The climate of the last two millennia was characterised by decadal to multi‐centennial variations which were recorded in terrestrial records and had important societal impacts. The cause of these climatic events is still under debate but changes in the North Atlantic circulation have often been proposed to play an important role. In this review we compile available high‐resolution paleoceanographic datasets from the northern North Atlantic and Nordic Seas. The records are grouped into regions related to modern ocean conditions and their variability is discussed. We additionally discuss our current knowledge from modelling studies, with a specific focus on the dynamical changes that are not well inferred from the proxy records. An illustration is provided through the analysis of two climate model ensembles and an individual simulation of the last millennium. This review thereby provides an up‐to‐date paleo‐perspective on the North Atlantic multidecadal to multi‐centennial ocean variability across the last two millennia.

Description: Hydrothermal fluids on the modern seafloor are important carriers of base and precious metals in a wide range of volcanic and tectonic settings. The concentrations and distribution, especially of gold and silver, in associated seafloor massive sulfide (SMS) deposits are strongly influenced by variable source rocks, fluid chemistry, and precipitation mechanisms. Compositional data of 130 SMS deposits around the world show a large range of gold and silver grades, in part reflecting strong buffering of the hydrothermal fluids by their host rocks. Geochemical reaction-path modeling shows that in most cases the investigated hydrothermal fluids are undersaturated with gold and silver, and solubilities can be orders of magnitude higher than the Au and Ag concentrations measured in the corresponding fluids. Precipitation of gold during conductive cooling of mid-ocean ridge black smoker (MOR) fluids occurs at low temperatures but can be very rapid, with 〉 90% of the gold deposited in the first 25 °C of cooling below ~ 150 °C. The result is a Zn–Au polymetallic assemblage with Au and Ag deposited at the same time together with Pb and sulfosalts. In ultramafic-dominated (UM) systems, the strongly reduced hydrothermal fluids promote the deposition of gold at higher temperatures and explain the correlation between gold and copper in these deposits. In this case, the lower stability of the AuHS° complex at low ƒO2 (buffered by fayalite, magnetite, and quartz) results in gold deposition at 〉 250 °C with early bornite and chalcopyrite and before sphalerite and silver, producing a high-temperature Cu–Au assemblage. In sediment-hosted (SED) systems, the much higher pH stabilizes Au(HS)2− and keeps gold in solution to very low temperatures, after the precipitation of chalcopyrite, sphalerite, and galena, resulting in Au-poor polymetallic sulfides and very late-stage deposition of gold, commonly with amorphous silica. In arc-related (ARC) systems, gold deposition occurs at somewhat higher temperatures than in the MOR case, in part because the fluids start with higher gold concentrations. This can be explained by probable direct magmatic contributions, and the high ƒO2 of the fluids, which promotes the solubility of gold at the source. During cooling, gold precipitates at about 160 °C with sphalerite, tennantite, silver, and galena, resulting in an Au-rich polymetallic sulfide assemblage. The mixing of hydrothermal fluids with seawater generally causes oxidation and eventually a decrease in the pH at a mixing ratio of 1:1, causing an initial increase in the solubility of gold and silver. This can delay gold deposition from aqueous species to very low temperatures. These complex systematics make prediction of Au and Ag grades difficult. However, important new data are coming to light on the actual concentrations of the precious metals in hydrothermal fluids. In particular, the input of magmatic volatiles and leaching of pre-existing gold can lead to significant increases in the Au and Ag concentrations of the venting fluids and earlier deposition. In several cases, it appears that at least part of the gold load is present as nanoparticles in suspension, allowing bulk gold concentrations that may be far in excess of liquid saturation. Boiling at the seafloor is now widely observed, even at great water depths close to the critical point of seawater. Model calculations of phase separation during boiling show the competing effects on gold solubility of H2, H2S, and CO2 partitioning into the vapor, which can result in highly variable gold-to-base metal ratios in the deposits. Flashing of the vent fluids into steam at high temperatures is also commonly observed and can lead to spectacular Au grades, with a strong Cu–Au association in the deepest and hottest vents.

Description: In the course of the ongoing global intensification and diversification of human pressures, the study of variation patterns of biological traits along environmental gradients can provide relevant information on the performance of species under shifting conditions. The pronounced salinity gradient, co‐occurrence of multiple stressors, and accelerated rates of change make the Baltic Sea and its transition to North Sea a suitable region for this type of study. Focusing on the bladderwrack Fucus vesiculosus, one of the main foundation species on hard‐bottoms of the Baltic Sea, we analyzed the phenotypic variation among populations occurring along 2,000 km of coasts subjected to salinities from 4 to 〉30 and a variety of other stressors. Morphological and biochemical traits, including palatability for grazers, were recorded at 20 stations along the Baltic Sea and four stations in the North Sea. We evaluated in a common modeling framework the relative contribution of multiple environmental drivers to the observed trait patterns. Salinity was the main and, in some cases, the only environmental driver of the geographic trait variation in F. vesiculosus. The decrease in salinity from North Sea to Baltic Sea stations was accompanied by a decline in thallus size, photosynthetic pigments, and energy storage compounds, and affected the interaction of the alga with herbivores and epibiota. For some traits, drivers that vary locally such as wave exposure, light availability or nutrient enrichment were also important. The strong genetic population structure in this macroalgae might play a role in the generation and maintenance of phenotypic patterns across geographic scales. In light of our results, the desalination process projected for the Baltic Sea could have detrimental impacts on F. vesiculosus in areas close to its tolerance limit, affecting ecosystem functions such as habitat formation, primary production, and food supply.

Description: Key Points: • A regional ocean model is used to examine multidecadal shelf temperature changes on the Agulhas Bank • There are distinct shelf temperature regime changes in 1966 and 1996 • These regime shifts are caused by changes in coastal upwelling linked to large-scale wind variability The Agulhas Bank is an important area for the spawning of small pelagic fish and other species. Here, within a NEMO ocean model, we investigate changes in temperature over the Bank on multidecadal time scales. In agreement with previous observational studies, a shift to colder temperatures is found in 1997. The model also simulates an earlier shift from colder to warmer temperatures in 1966. These shifts are coastally confined and shown, using a climatologically forced model run as a control, to be driven by a north‐south migration in the large‐scale wind belts, rather than by changes in downward heat fluxes or changes in the Agulhas Current itself. The zonal wind changes on the Agulhas Bank show a significant relationship with the Southern Annular Mode, showing some promise for future predictability of cold and warm regimes on the Agulhas Bank. Thus, while the Agulhas Current has been shown in previous work to have a large impact on intra‐annual and interannual temperature variability, this work shows that multidecadal variability in temperature on the shelf is likely to be wind forced.

Description: The ecological approach to comparative cognition emphasizes that the ecological and social environment are important predictors of cognitive performance. We used this approach to test whether differences in habitat use and social behavior in the facultative Caribbean cleaning goby Elacatinus prochilos predict differences in learning performance in two discriminatory two-choice tasks. This species has two behavioral ecotypes: one that frequently engages in cleaning interactions and inhabits corals in male–female pairs (cleaning gobies) and another that rarely engages in cleaning interactions and inhabits barrel sponges in large groups (sponge-dwellers). We predicted that cleaning gobies would outperform sponge-dwellers in a pattern-cued task, which consisted of identifying the pattern on a plate that consistently provided food, while sponge-dwellers would outperform cleaning gobies in a spatial task, which consisted of identifying the location of the plate. Contrary to our predictions, there was no difference in performance between the two ecotypes. Most of the gobies performed poorly in the pattern-cued task and well in the spatial task. A possible explanation for these results is that the association of a pattern with positive and negative reinforcement may not be a pre-requisite for engaging in cleaning interactions, while spatial skills might be equally required in both ecotypes. Alternatively, the two ecotypes can flexibly adjust to new feeding conditions, which would explain their similar performance in the spatial task. Further research should investigate which aspects of E. prochilos’ social and ecological environment might impose challenges that require spatial cognition and whether individuals can flexibly adjust to new habitats and feeding conditions.

Description: Gravitational sinking of photosynthetically fixed particulate organic carbon (POC) constitutes a key component of the biological carbon pump. The fraction of POC leaving the surface ocean depends on POC sinking velocity (SV) and remineralization rate (Cremin), both of which depend on plankton community structure. However, the key drivers in plankton communities controlling SV and Cremin are poorly constrained. In fall 2014, we conducted a 6 weeks mesocosm experiment in the subtropical NE Atlantic Ocean to study the influence of plankton community structure on SV and Cremin. Oligotrophic conditions prevailed for the first 3 weeks, until nutrient‐rich deep water injected into all mesocosms stimulated diatom blooms. SV declined steadily over the course of the experiment due to decreasing CaCO3 ballast and – according to an optical proxy proposed herein – due to increasing aggregate porosity mostly during an aggregation event after the diatom bloom. Furthermore, SV was positively correlated with the contribution of picophytoplankton to the total phytoplankton biomass. Cremin was highest during a Synechococcus bloom under oligotrophic conditions and in some mesocosms during the diatom bloom after the deep‐water addition while it was particularly low during harmful algal blooms. The temporal changes were considerably larger in Cremin (max. 15‐fold) than in SV (max. 3‐fold). Accordingly, estimated POC transfer efficiency to 1000 m was mainly dependent on how the plankton community structure affected Cremin. Our approach revealed key players and interactions in the plankton food web influencing POC export efficiency thereby improving our mechanistic understanding of the biological carbon pump. Key points Sinking velocity was higher during oligotrophy than during blooms which is linked to ballast, porosity, and phytoplankton size structure Remineralization was highly variable but tended to be higher during Synechococcus or diatom blooms and lower during harmful algal blooms Plankton community structure had a considerably larger influence on particle remineralization rate than on sinking velocity

Description: The physiological processes driving the rapid rates of calcification in larval bivalves are poorly understood. Here, we use a calcification substrate-limited approach (low dissolved inorganic carbon, CT) and mRNA sequencing to identify proteins involved in bicarbonate acquisition during shell formation. As a secondary approach, we examined expression of ion transport and shell matrix proteins (SMPs) over the course of larval development and shell formation. We reared four families of Mytilus edulis under ambient (ca. 1865 µmol/kg) and low CT (ca. 941 µmol/kg) conditions and compared expression patterns at six developmental time points. Larvae reared under low CT exhibited a developmental delay, and a small subset of contigs was differentially regulated between ambient and low CT conditions. Of particular note was the identification of one contig encoding an anion transporter (SLC26) which was strongly upregulated (2.3–2.9 fold) under low CT conditions. By analyzing gene expression profiles over the course of larval development, we are able to isolate sequences encoding ion transport and SMPs to enhance our understanding of cellular pathways underlying larval calcification processes. In particular, we observe the differential expression of contigs encoding SLC4 family members (sodium bicarbonate cotransporters, anion exchangers), calcium-transporting ATPases, sodium/calcium exchangers, and SMPs such as nacrein, tyrosinase, and transcripts related to chitin production. With a range of candidate genes, this work identifies ion transport pathways in bivalve larvae and by applying comparative genomics to investigate temporal expression patterns, provides a foundation for further studies to functionally characterize the proteins involved in larval calcification.

Description: Mid‐ocean ridge axes are marked by segmentation of the axes and underlying magmatic systems. Fine‐scale segmentation has mainly been studied along fast‐spreading ridges. Here we offer insight into the third‐ and fourth‐order segmentation of intermediate‐spreading ridges and their temporal evolution. The Alarcón Rise and the Endeavour Segment have similar spreading rates (49 and 52.5 mm/year, respectively) but contrasting morphologies that vary from an axial high with a relatively narrow axial summit trough to an axial valley. One‐meter resolution bathymetry acquired by autonomous underwater vehicles, lava geochemistry, and ages from sediment cores is combined with available seismic reflection profiles to analyze variations in (1) geometry and orientation of the axial summit trough or valley, (2) seafloor depth near the axis, and (3) distribution of hydrothermal vents, (4) lava chemistry, and (5) flow ages between contiguous axes. Along both intermediate‐spreading segments, third‐ and fourth‐order discontinuities and associated segments are similar in dimension to what has been observed along fast‐spreading ridges. The Alarcón Rise and the Endeavour Segment also allow the study of the evolution of fine‐scale segmentation over periods of 300 to 4,000 years. Comparison between old and young axes reveals that the evolution of fine‐scale segmentation depends on the intensity of the magmatic activity. High magmatic periods are associated with rapid evolution of third‐order segments, while low magmatic activity periods, dominated by tectonic deformation and/or hydrothermal activity, are associated with little to no change in segmentation.

Description: The subterranean flow of water through sand barriers between coastal lagoons and the sea, driven by a positive hydraulic gradient, is a net new pathway for solute transfer to the sea. On the sea side of sand barriers, seawater circulation in the swash-zone generates a flux of recycled and new solutes. The significance and temporal variability of these vectors to the French Mediterranean Sea is unknown, despite lagoons constituting ~ 50% of the coastline. A one-dimensional Ra-224(ex)/Ra-223 reactive-transport model was used to quantify water flow between a coastal lagoon (La Palme) and the sea over a 6-month period. Horizontal flow between the lagoon and sea decreased from ~ 85 cm d(-1) during May 2017 (0.3 m(3) d(-1) m(-1) of shoreline) to ~ 20 cm d(-1) in July and was negligible in the summer months thereafter due to a decreasing hydraulic gradient. Seawater circulation in the swash-zone varied from 10 to 52 cm d(-1) (0.4-2.1 m(3) d(-1) m(-1)), driven by short-term changes in the prevailing wind and wave regimes. Both flow paths supply minor dissolved silica fluxes on the order of ~ 3-10 mmol Si d(-1) m(-1). Lagoon-sea water exchange supplies a net dissolved inorganic carbon (DIC) flux (320-1100 mmol C d(-1) m(-1)) two orders of magnitude greater than seawater circulation and may impact coastal ocean acidification. The subterranean flow of water through sand barriers represents a significant source of new DIC, and potentially other solutes, to the Mediterranean Sea during high lagoon water-level periods and should be considered in seasonal element budgets.

Description: We study the structure and tectonics of the collision zone between the Nazca Ridge (NR) and the Peruvian margin constrained by seismic, gravimetric, bathymetric, and natural seismological data. The NR was formed in an on-ridge setting, and it is characterized by a smooth and broad shallow seafloor (swell) with an estimated buoyancy flux of ~7 Mg/s. The seismic results show that the NR hosts an oceanic lower crust 10–14 km thick with velocities of 7.2–7.5 km/s suggesting intrusion of magmatic material from the hot spot plume to the oceanic plate. Our results show evidence for subduction erosion in the frontal part of the margin likely enhanced by the collision of the NR. The ridge-trench collision zone correlates with the presence of a prominent normal scarp, a narrow continental slope, and (uplifted) shelf. In contrast, adjacent of the collision zone, the slope does not present a topographic scarp and the continental slope and shelf become wider and deeper. Geophysical and geodetic evidence indicate that the collision zone is characterized by low seismic coupling at the plate interface. This is consistent with vigorous subduction erosion enhanced by the subducting NR causing abrasion and increase of fluid pore pressure at the interplate contact. Furthermore, the NR has behaved as a barrier for rupture propagation of megathrust earthquakes (e.g., 1746 Mw 8.6 and 1942 Mw 8.1 events). In contrast, for moderate earthquakes (e.g., 1996 Mw 7.7 and 2011 Mw 6.9 events), the NR has behaved as a seismic asperity nucleating at depths 〉20 km.

Description: Precipitation in California is modulated by variability in the tropical Pacific associated with El Nino/Southern Oscillation (ENSO): more rainfall is expected during El Nino episodes, and reduced rainfall during La Nina. It has been suggested that besides the shape and location of the sea surface temperature ( SST) anomaly this remote connection depends on the strength and location of the atmospheric convection response in the tropical Pacific. Here we show in a perturbed physics ensemble of the Kiel Climate Model and CMIP5 models that due to a cold equatorial SST bias many climate models are in a La Nina-like mean state, resulting in a too westward position of the rising branch of the Pacific Walker Circulation. This in turn results in a convective response along the equator during ENSO events that is too far west in comparison to observations. This effect of the equatorial cold SST bias is not restricted to the tropics, moreover it leads to a too westward SLP response in the North Pacific and too westward precipitation response that does not reach California. Further we show that climate models with a reduced equatorial cold SST bias have a more realistic representation of the spatial asymmetry of the teleconnections between El Nino and La Nina.