ALBERT

Description: Microbial co‐cultivation is employed for awakening silent biosynthetic gene clusters (BGCs) to enhance chemical diversity. However, the selection of appropriate partners for co‐cultivation remains a challenge. Furthermore, competitive interactions involving the suppression of BGCs or upregulation of known, functional metabolite(s) during co‐cultivation efforts is also common. Herein, we performed an alternative approach for targeted selection of the best co‐cultivation pair. Eight marine sediment‐derived fungi were classified as strong or weak, based on their anti‐phytopathogenic potency. The fungi were co‐cultured systematically and analyzed for their chemical profiles and anti-phytopathogenic activity. Based on enhanced bioactivity and a significantly different metabolite profile including the appearance of a co‐culture specific cluster, the co‐culture of Plenodomus influorescens (strong) and Pyrenochaeta nobilis (weak) was prioritized for chemical investigation. Large‐scale co‐cultivation resulted in isolation of five polyketide type compounds: two 12‐membered macrolides, dendrodolide E (1) and its new analog dendrodolide N (2), as well as two rare azaphilones spiciferinone (3) and its new analog 8a-hydroxy-spiciferinone (4). A well‐known bis‐naphtho‐γ‐pyrone type mycotoxin, cephalochromin (5), whose production was specifically enhanced in the co-culture, was also isolated. Chemical structures of compounds 1–5 were elucidated by NMR, HRMS and [] 20/D analyses. Compound 5 showed the strongest anti‐phytopathogenic activity against Xanthomonas campestris and Phytophthora infestans with IC50 values of 0.9 and 1.7 µg/mL, respectively.

Description: The fungal genus Pyrenochaetopsis is commonly found in soil, terrestrial, and marine environments, however, has received little attention as a source of bioactive secondary metabolites so far. In a recent work, we reported the isolation and characterization of three new anticancer decalinoyltetramic acid derivatives, pyrenosetins A-C, from the Baltic Fucus vesiculosus-derived endophytic fungus Pyrenochaetopsis sp. FVE-001. Herein we report a new pentacyclic decalinoylspirotetramic acid derivative, pyrenosetin D (1), along with two known decalin derivatives wakodecalines A (2) and B (3) from another endophytic strain Pyrenochaetopsis FVE-087 isolated from the same seaweed and showed anticancer activity in initial screenings. The chemical structures of the purified compounds were elucidated by comprehensive analysis of HR-ESIMS, FT-IR, [a]D, 1D and 2D NMR data coupled with DFT calculations of NMR parameters and optical rotation. Compounds 1-3 were evaluated for their anticancer and toxic potentials against the human malignant melanoma cell line (A-375) and the non-cancerous keratinocyte cell line (HaCaT). Pyrenosetin D (1) showed toxicity towards both A-375 and HaCaT cells with IC50 values of 77.5 and 39.3 μM, respectively, while 2 and 3 were inactive. This is the third chemical study performed on the fungal genus Pyrenochaetopsis and the first report of a pentacyclic decalin ring system from the fungal genus Pyrenochaetopsis.

Description: There is growing evidence that passive margin sediments in offshore settings host large volumes of fresh and brackish water of meteoric origin in submarine sub-surface reservoirs. Marine geophysical methods, in particular seismic reflection data, can help characterize offshore hydrogeological systems and yet the existing global database of industrial basin wide surveys remains untapped in this context. In this paper we highlight the importance of these data in groundwater exploration, by reviewing existing studies that apply physical stratigraphy and morpho-structural interpretation techniques to provide important information on—reservoir (aquifer) properties and architecture, permeability barriers, paleo-continental environments, sea-level changes and shift of coastal facies through time and conduits for water flow. We then evaluate the scientific and applied relevance of such methodology within a holistic workflow for offshore groundwater research.

Description: The study of wetlands is particularly important as these systems act as natural water purifiers and thus can act as sinks for contaminated particles. Wetland sediments are important as they provide an indication of potential contamination across temporal and spatial scales. The current study aimed to investigate the distributions of selected metals and nutrients in different sites in relation to sediment depth, and identify relationships among sediment metals. Significant differences in nutrient (i.e., N, P) and metal (i.e., K, Mg, Na, Fe, Cu, B) concentrations were found across study sites, whereas nutrients (i.e., N, P) and metals (i.e., Ca, Mg, Fe, Cu, Zn) were significantly different with sediment depths. When compared against Canadian sediment standards, most of the assessed metals were within the “no effect” level across the different sites and depths. The K, Ca, and Mg concentration showed extreme contamination across all sites and depths. The enrichment factor values for K, Ca, and Mg showed extremely high enrichment levels for all sites and sediment depths. The Na, Mn, Fe, Cu, Zn, and B concentration showed mostly background enrichment levels. All sediments across the different sites and sediment depths indicated deterioration of sediment quality. Pearson correlations suggest that most metals might have originated in a similar source as that of Mn and B, owing to a lack of significant differences. These results provide baseline information for the general management of the Nylsvley Wetland in relation to sediment metal pollution. The specific sources of metal contaminants also require further elucidation to further inform management efforts.

Description: Detailed multi-beam bathymetry, sub-bottom acoustic, and side-scan sonar observations of submerged canyons with tufa barriers were used to characterize the Zrmanja River karst estuary on the eastern Adriatic coast, Croatia. This unique karst environment consists of two submerged karst basins (Novigrad Sea and Karin Sea) that are connected with river canyons named Novsko Ždrilo and Karinsko Ždrilo. The combined use of high-resolution geophysical data with legacy topography and bathymetry data in a GIS environment allowed for the description and interpretation of this geomorphological setting in relation to the Holocene sea-level rise. The tufa barriers had a predominant influence on the Holocene flooding dynamics of the canyons and karst basins. Here, we describe the possible river pathways from the basins during the lowstand and the formation of a lengthening estuary during the Holocene sea-level rise. Based on the analyzed morphologies and the relative sea-level curve for the Adriatic Sea, the flooding of the Novsko Ždrilo occurred 9200 years before present (BP) and Karinsko Ždrilo was flooded after 8400 years BP. The combination of high-resolution geophysical methods gave an accurate representation of the karst estuarine seafloor and the flooding of semi-isolated basins due to sea-level rise.

Description: Many filamentous vibriophages encode virulence genes that lead to the emergence of pathogenic bacteria. Most genomes of filamentous vibriophages characterized up until today were isolated from human pathogens. Despite genome-based predictions that environmental Vibrios also contain filamentous phages that contribute to bacterial virulence, empirical evidence is scarce. This study aimed to characterize the bacteriophages of a marine pathogen, Vibrio alginolyticus (Kiel-alginolyticus ecotype) and to determine their role in bacterial virulence. To do so, we sequenced the phage-containing supernatant of eight different V. alginolyticus strains, characterized the phages therein and performed infection experiments on juvenile pipefish to assess their contribution to bacterial virulence. We were able to identify two actively replicating filamentous phages. Unique to this study was that all eight bacteria of the Kiel-alginolyticus ecotype have identical bacteriophages, supporting our previously established theory of a clonal expansion of the Kiel-alginolyticus ecotype. We further found that in one of the two filamentous phages, two phage-morphogenesis proteins (Zot and Ace) share high sequence similarity with putative toxins encoded on the Vibrio cholerae phage CTXΦ. The coverage of this filamentous phage correlated positively with virulence (measured in controlled infection experiments on the eukaryotic host), suggesting that this phage contributes to bacterial virulence.

Description: The migration of methane through the gas hydrate stability zone (GHSZ) in the marine subsurface is characterized by highly dynamic reactive transport processes coupled to thermodynamic phase transitions between solid gas hydrates, free methane gas, and dissolved methane in the aqueous phase. The marine subsurface is essentially a water-saturated porous medium where the thermodynamic instability of the hydrate phase can cause free gas pockets to appear and disappear locally, causing the model to degenerate. This poses serious convergence issues for the general-purpose nonlinear solvers (e.g., standard Newton), and often leads to extremely small time-step sizes. The convergence problem is particularly severe when the rate of hydrate phase change is much lower than the rate of gas dissolution. In order to overcome this numerical challenge, we have developed an all-at-once Newton scheme tailored to our gas hydrate model, which can handle rate-based hydrate phase change coupled with equilibrium gas dissolution in a mathematically consistent and robust manner.

Description: Latrunculia sponges represent a rich source of discorhabdin-type pyrroloiminoquinone alkaloids, a few of which comprise a dimeric structure. The anticancer-activity-guided isolation of the n-hexane subextract of the Antarctic deep-sea sponge Latrunculia biformis yielded the known compound (−)-(1R,2R,6R,8S,6'S)-discorhabdin B dimer (1) and two new derivatives, (−)-(1S,2R,6R,8S,6'S)-discorhabdin B dimer (2) and (−)-(1R,2R,6R,8S,6'S)-16',17'-dehydrodiscorhabdin B dimer (3). The chemical structures of compounds 1–3 were elucidated by means of HR-ESIMS, NMR, [], ECD spectroscopy, and a comparison with the previously reported discorhabdin analogs. Compounds 1 and 2 showed significant in vitro anticancer activity against the human colon cancer cell line (HCT-116), with IC50 values of 0.16 and 2.01 µM, respectively. Compared to monomeric discorhabdins, dimeric discorhabdins are very rare in Nature. This study adds two new discorhabdin dimers (2 and 3) to this small pyrroloiminoquinone subfamily. This is also the first report of compound 1 as a natural product and the first assessment of its in vitro anticancer activity.

Description: Sea foam harbors a diverse range of fungal spores with biological and ecological relevance in marine environments. Fungi are known as the producers of secondary metabolites that are used in health and agricultural sectors, however the potentials of sea foam-derived fungi have remained unexplored. In this study, organic extracts of six foam-derived fungal isolates belonging to the genera Penicillium, Cladosporium, Emericellopsis and Plectosphaerella were investigated for their antimicrobial activity against plant and human pathogens and anticancer activity. In parallel, an untargeted metabolomics study using UPLC-QToF–MS/MS-based molecular networking (MN) was performed to unlock their chemical inventory. Penicillium strains were identified as the most prolific producers of compounds with an average of 165 parent ions per strain. In total, 49 known mycotoxins and functional metabolites were annotated to specific and ubiquitous parent ions, revealing considerable chemical diversity. This allowed the identification of putative new derivatives, such as a new analog of the antimicrobial tetrapeptide, fungisporin. Regarding bioactivity, the Penicillium sp. isolate 31.68F1B showed a strong and broad-spectrum activity against seven plant and human pathogens, with the phytopathogen Magnaporthe oryzae and the human pathogen Candida albicans being the most susceptible (IC50 values 2.2 and 6.3 µg/mL, respectively). This is the first study mining the metabolome of the sea foam-derived fungi by MS/MS-based molecular networking, and assessing their biological activities against phytopathogens

Description: This paper presents the technological developments and the policy contexts for the project “Autonomous Robotic Sea-Floor Infrastructure for Bentho-Pelagic Monitoring” (ARIM). The development is based on the national experience with robotic component technologies that are combined and merged into a new product for autonomous and integrated ecological deep-sea monitoring. Traditional monitoring is often vessel-based and thus resource demanding. It is economically unviable to fulfill the current policy for ecosystem monitoring with traditional approaches. Thus, this project developed platforms for bentho-pelagic monitoring using an arrangement of crawler and stationary platforms at the Lofoten-Vesterålen (LoVe) observatory network (Norway). Visual and acoustic imaging along with standard oceanographic sensors have been combined to support advanced and continuous spatial-temporal monitoring near cold water coral mounds. Just as important is the automatic processing techniques under development that have been implemented to allow species (or categories of species) quantification (i.e., tracking and classification). At the same time, real-time outboard processed three-dimensional (3D) laser scanning has been implemented to increase mission autonomy capability, delivering quantifiable information on habitat features (i.e., for seascape approaches). The first version of platform autonomy has already been tested under controlled conditions with a tethered crawler exploring the vicinity of a cabled stationary instrumented garage. Our vision is that elimination of the tether in combination with inductive battery recharge trough fuel cell technology will facilitate self-sustained long-term autonomous operations over large areas, serving not only the needs of science, but also sub-sea industries like subsea oil and gas, and mining.

Description: The Thessaloniki Bay is a eutrophic coastal area which has been characterized in recent years by frequent and intense phytoplankton blooms and red tides. The aim of the study was to investigate the underexplored diversity of marine unicellular eukaryotes in four different sampling sites in Thessaloniki Bay during a year of plankton blooms, red tides, and mucilage aggregates. High-Throughput Sequencing (HTS) was applied in extracted DNA from weekly water samples targeting the 18S rRNA gene. In almost all samples, phytoplankton blooms and/or red tides and mucilage aggregates were observed. The metabarcoding analysis has detected the known unicellular eukaryotic groups frequently observed in the Bay, dominated by Bacillariophyta and Dinoflagellata, and revealed taxonomic groups previously undetected in the study area (MALVs, MAST, and Cercozoa). The dominant OTUs were closely related to species known to participate in red tides, harmful blooms, and mucilage aggregates. Other OTUs, present also during the blooms in low abundance (number of reads), were closely related to known harmful species, suggesting the occurrence of rare taxa with potential negative impacts on human health not detectable with classical microscopy. Overall, the unicellular eukaryote assemblages showed temporal patterns rather than small-scale spatial separation responding to the variability of physical and chemical factors.

Description: Metal pollution is pervasive across terrestrial and aquatic ecosystems owing to anthropogenic activities. Sediments can accrue high concentrations of metals and act as secondary sources, and thus may be valuable indicators of metal contamination across spatiotemporal scales. In aquatic systems, the extent of metal pollution may be further mediated by transference among sediments and living organisms, with plant metal contaminants potentially predictive of underlying sediment concentrations. The present study thus quantifies the extent of metal pollutants (Na, K, Ca, Mg, Cu, Zn, Mn, B, Fe) across multiple study sites and seasons (cool-dry, hot-wet, hot-dry) in a subtropical river system. Furthermore, uptake by a key macrophyte species, Phragmites australis, was examined and correlated with sediment pollution levels among different plant parts. Overall, sediment pollution load indices differed seasonally, being significantly highest during the cool-dry season irrespective of sampling location, suggesting that periods with reduced water flows can exacerbate metal pollution levels in riverine sediments. Also, metal concentrations were highest in upstream wetland sites, indicating a capacity for metal sink effects in these areas. Overall, macrophytes contained high concentrations of select metals, however composition and concentrations differed across plant parts, with roots containing particularly high concentrations of Fe and B. Correlations between sediment and macrophyte concentrations were mostly non-significant, whilst stem Mn and Fe concentrations correlated significantly negatively and positively to sediment concentrations, respectively. The present study identifies key spatiotemporal differences in multiple metal contaminants in an understudied subtropical aquatic system that align with hydrological regime differences. Whilst macrophytes were not found to be major accumulators, or predictors, of metal contaminants in this study, they may collectively play a central role in concentration regulation in aquatic systems.

Description: Cyanobacterial blooms are the most important and best studied type of harmful algal blooms in fresh waters and brackish coastal seas. We here review how and to which extent they resist grazing by zooplankton, how zooplankton responds to cyanobacterial blooms and how these effects are further transmitted to fish. Size, toxicity and poor nutritional value are widespread mechanisms of grazing defense by cyanobacteria. In some cases, defenses are inducible, in some they are obligate. However, to some extent zooplankton overcome grazing resistance, partly after evolutionary adaptation. Cyanotoxins are also harmful to fish and may cause fish kills. However, some fish species feed on Cyanobacteria, are able to reduce their abundance, and grow on a cyanobacterial diet. While reduced edibility for crustacean zooplankton tends to elongate the food chain from primary producers to fish, direct feeding by fish tends to shorten it. The few available comparative studies relating fish yield to nutrients or phytoplankton provide no indication that cyanobacteria should reduce the ratio fish production: primary production.

Description: Semiconductor-based light emitting diodes can be used for photon emission as well as for detection of photons. In this paper, we present a fair comparison between off-the-shelf power Light emitting diodes (LEDs) and a silicon photodetector with respect to their spectral, temporal, and spatial properties. The examined LED series features unexpected good sensitivity and distinct optical bandpass characteristic suitable for daylight filtering or color selectivity. Primary application is short range optical underwater communication, but results are generally applicable.

Description: Brown alga Bifurcaria bifurcata is a prolific source of bioactive acyclic (linear) diterpenes with high structural diversity. In the continuation of our investigations on Irish brown algae, we undertook an in-depth chemical study on the n-hexanes and chloroform subextracts of B. bifurcata that led to isolation of six new (1–6) and two known (7–8) acyclic diterpenes. Chemical structures of the compounds were elucidated by a combination of 1D and 2D NMR, HRMS, FT-IR, [α]D and vibrational circular dichroism (VCD) spectroscopy. Compounds 1–8, as well as three additional linear diterpenes (9–11), which we isolated from the same seaweed before, were tested against the human breast cancer cell line (MDA-MB-231). Several compounds moderately inhibited the growth of the MDA-MB-231 cell line with IC50 values ranging from 11.6 to 32.0 μg/mL. The present study carried out on the lipophilic extracts of the Irish B. bifurcata shows the enormous capacity of this seaweed to produce a large palette of acyclic diterpenes with diverse oxygenation and substitution patterns and promising bioactivities.

Description: The on-board identification of ore minerals during a cruise is often postponed until long after the cruise is over. During the M127 cruise, 21 cores with deep-seafloor sediments were recovered in the Trans-Atlantic Geotraverse (TAG) field along the Mid Atlantic Ridge (MAR). Sediments were analyzed on-board for physicochemical properties such as lightness (L*), pH and Eh. Selected samples were studied for mineral composition by X-ray powder diffraction (XRD). Based on XRD data, sediment samples were separated into high-, low- and non-carbonated. Removal of carbonates is a common technique in mineralogical studies in which HCl is used as the extraction agent. In the present study, sequential extraction was performed with sodium acetate buffer (pH 5.0) to remove carbonates. The ratio between the highest calcite XRD reflection in the original samples (Iorig) vs its XRD-reflection in samples after their treatment with the buffer (Itreat) was used as a quantitative parameter of calcite removal, as well as to identify minor minerals in carbonated samples (when Iorig/Itreat 〉 24). It was found that the lightness parameter (L*) showed a positive correlation with calcite XRD reflection in selected TAG samples, and this could be applied to the preliminary on-board determination of extraction steps with acetate buffer (pH 5.0) in carbonated sediment samples. The most abundant minerals detected in carbonated samples were quartz and Al- and Fe-rich clays. Other silicates were also detected (e.g., calcic plagioclase, montmorillonite, nontronite). In non-carbonated samples, Fe oxides and hydroxides (goethite and hematite, respectively) were detected. Pyrite was the dominant hydrothermal mineral and Cu sulfides (chalcopyrite, covellite) and hydrothermal Mn oxides (birnessite and todorokite) were mineral phases identified in few samples, whereas paratacamite was detected in the top 20 cm of the core. The present study demonstrates that portable XRD analysis makes it possible to characterize mineralogy at cored sites, in particular in both low- and high-carbonated samples, before the end of most cruises, thus enabling the quick modification of exploration strategies in light of new information as it becomes available in near-real time.

Description: The brown alga Fucus vesiculosus is common to the intertidal zones of the Baltic Sea, where it is exposed to high fouling pressures by microorganisms. Our previous studies showed, repeatedly, the consistent antimicrobial activity of F. vesiculosus crude extracts against human pathogens, while untargeted metabolomics analyses have revealed a variety of metabolites. In this study, we applied the UPLC-QToF-MS/MS-based “bioactive molecular networking” (BMN) concept on the most bioactive n-hexane and n-butanol subextracts of Baltic F. vesiculosus coupled with in silico dereplication tools to identify the compounds responsible for antimicrobial activity. The first antimicrobial cluster identified by BMN was galactolipids. Our targeted isolation efforts for this class led to the isolation of six monogalactosyldiacylglycerol (MGDG) derivatives (1–6) and one digalactosyldiacylglycerol (DGDG, 7). The MGDGs 5 and 6 and the DGDG 7 exhibited activity against Staphylococcus aureus. The second compound class with high bioactivity was phlorotannins. In particular, phlorethol-type phlorotannins showed high correlations with antimicrobial activity based on the BMN approach, and two phlorotannins (8–9) were isolated. This study shows that antimicrobial components of F. vesiculosus reside in the algal cell walls and membranes and that BMN provides a complementary tool for the targeted isolation of bioactive metabolites.

Description: Plastic pollution is a major global issue and its impacts on ecosystems and socioeconomic sectors lack comprehensive understanding. The integration of plastics issues into the educational system of both primary and secondary schools has often been overlooked, especially in Africa, presenting a major challenge to environmental awareness. Owing to the importance of early age awareness, this study aims to investigate whether plastic pollution issues are being integrated into South African primary and secondary education school curriculums. Using face-to-face interviews with senior educators, we address this research problem by investigating (i) the extent to which teachers cover components of plastic pollution, and (ii) educator understandings of plastic pollution within terrestrial and aquatic environments. The results indicate that plastic pollution has been integrated into the school curriculum in technology, natural science, geography, life science, life skills and life orientation subjects. However, there was a lack of integration of management practices for plastics littering, especially in secondary schools, and understanding of dangers among different habitat types. This highlights the need for better educational awareness on the plastic pollution problem at both primary and secondary school level, with increased environmental programs needed to educate schools on management practices and impacts

Description: In this work, we present MorphoCluster, a software tool for data-driven, fast, and accurate annotation of large image data sets. While already having surpassed the annotation rate of human experts, volume and complexity of marine data will continue to increase in the coming years. Still, this data requires interpretation. MorphoCluster augments the human ability to discover patterns and perform object classification in large amounts of data by embedding unsupervised clustering in an interactive process. By aggregating similar images into clusters, our novel approach to image annotation increases consistency, multiplies the throughput of an annotator, and allows experts to adapt the granularity of their sorting scheme to the structure in the data. By sorting a set of 1.2 M objects into 280 data-driven classes in 71 h (16 k objects per hour), with 90% of these classes having a precision of 0.889 or higher. This shows that MorphoCluster is at the same time fast, accurate, and consistent; provides a fine-grained and data-driven classification; and enables novelty detection.

Description: Imaging technologies are being deployed on cabled observatory networks worldwide. They allow for the monitoring of the biological activity of deep-sea organisms on temporal scales that were never attained before. In this paper, we customized Convolutional Neural Network image processing to track behavioral activities in an iconic conservation deep-sea species—the bubblegum coral Paragorgia arborea—in response to ambient oceanographic conditions at the Lofoten-Vesterålen observatory. Images and concomitant oceanographic data were taken hourly from February to June 2018. We considered coral activity in terms of bloated, semi-bloated and non-bloated surfaces, as proxy for polyp filtering, retraction and transient activity, respectively. A test accuracy of 90.47% was obtained. Chronobiology-oriented statistics and advanced Artificial Neural Network (ANN) multivariate regression modeling proved that a daily coral filtering rhythm occurs within one major dusk phase, being independent from tides. Polyp activity, in particular extrusion, increased from March to June, and was able to cope with an increase in chlorophyll concentration, indicating the existence of seasonality. Our study shows that it is possible to establish a model for the development of automated pipelines that are able to extract biological information from times series of images. These are helpful to obtain multidisciplinary information from cabled observatory infrastructures.

Description: Marine algae represent a prolific source of filamentous fungi for bioprospecting. In continuation of our search for new anticancer leads from fungi derived from the brown alga Fucus vesiculosus, an endophytic Pyrenochaetopsis sp. FVE-001 was selected for an in-depth chemical analysis. The crude fungal extract inhibited several cancer cell lines in vitro, and the highest anticancer activity was tracked to its CHCl3–soluble portion. A bioactivity-based molecular networking approach was applied to C18-SPE fractions of the CHCl3 subextract to predict the bioactivity scores of metabolites in the fractions and to aid targeted purification of anticancer metabolites. This approach led to a rapid isolation of three new decalinoylspirotetramic acid derivatives, pyrenosetins A–C (1–3) and the known decalin tetramic acid phomasetin (4). The structures of the compounds were elucidated by extensive NMR, HR-ESIMS, FT-IR spectroscopy, [α]D and Mosher’s ester method. Compounds 1 and 2 showed high anticancer activity against malignant melanoma cell line A-375 (IC50 values 2.8 and 6.3 μM, respectively), in line with the bioactivity predictions. This is the first study focusing on secondary metabolites of a marine-derived Pyrenochaetopsis sp. and the second investigation performed on the member of the genus Pyrenochaetopsis.

Description: Electromagnetic (EM) geophysical methods are well equipped to distinguish electrical resistivity contrasts between freshwater-saturated and seawater-saturated formations. Beneath the semi-arid, rapidly urbanizing island of Malta, offshore groundwater is an important potential resource but it is not known whether the regional mean sea-level aquifer (MSLA) extends offshore. To address this uncertainty, land-based alongshore and across-shore time-domain electromagnetic (TDEM) responses were acquired with the G-TEM instrument (Geonics Ltd., Mississauga, ON, Canada) and used to map the onshore structure of the aquifer. 1-D inversion results suggest that the onshore freshwater aquifer resides at 4–24 m depth, underlain by seawater-saturated formations. The freshwater aquifer thickens with distance from the coastline. We present 2D and 3D electromagnetic forward modeling based on finite-element (FE) analysis to further constrain the subsurface geometry of the onshore freshwater body. We interpret the high resistivity zones that as brackish water-saturated bodies are associated with the mean sea-level aquifer. Generally, time-domain electromagnetic (TDEM) results provide valuable onshore hydrogeological information, which can be augmented with marine and coastal transition-zone measurements to assess potential hydraulic continuity of terrestrial aquifers extending offshore.

Description: The geographic position, highly fluctuating sea temperatures and hypersalinity make Persian Gulf an extreme environment. Although this unique environment has high biodiversity dominated by invertebrates, its potential in marine biodiscovery has largely remained untapped. Herein, we aimed at a detailed analysis of the metabolome and bioactivity profiles of the marine sponge Axinella sinoxea collected from the northeast coast of the Persian Gulf in Iran. The crude extract and its Kupchan subextracts were tested in multiple in-house bioassays, and the crude extract and its CHCl3-soluble portion showed in vitro antibacterial activity against Methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecium (Efm). A molecular networking (MN)-based dereplication strategy by UPLC-MS/MS revealed the presence of phospholipids and steroids, while 1H NMR spectroscopy indicated the presence of additional metabolites, such as diketopiperazines (DKPs). Integrated MN and 1H NMR analyses on both the crude and CHCl3 extracts combined with an antibacterial activity-guided isolation approach afforded eight metabolites: a new diketopiperazine, (-)-cyclo(L-trans-Hyp-L-Ile) (8); a known diketopiperazine, cyclo(L-trans-Hyp-L-Phe) (7); two known phospholipids, 1-O-hexadecyl-sn-glycero-3-phosphocholine (1) and 1-O-octadecanoyl-sn-glycero-3-phosphocholine (2); two known steroids, 3β-hydroxycholest-5-ene-7,24-dione (3) and (22E)-3β-hydroxycholesta-5,22-diene-7,24-dione (4); two known monoterpenes, loliolide (5) and 5-epi-loliolide (6). The chemical structures of the isolates were elucidated by a combination of NMR spectroscopy, HRMS and [α]D analyses. All compounds were tested against MRSA and Efm, and compound 3 showed moderate antibacterial activity against MRSA (IC50 value 70 μg/mL). This is the first study that has dealt with chemical and bioactivity profiling of A. sinoxea leading to isolation and characterization of pure sponge metabolites.

Description: Leaf litter contributes to the functioning of aquatic ecosystems through allochthonous inputs of carbon, nitrogen, and other elements. Here, we examine leaf litter nutrient inputs and decomposition associated with four plant species using a mesocosm approach. Native sycamore fig Ficus sycomorus L., and silver cluster–leaf Terminalia sericea Burch. ex DC. decomposition dynamics were compared to invasive tickberry Lantana camara L. and guava Psidium guajava L., whereby phosphate, nitrate, nitrite, silicate, and ammonium releases were quantified over time. Leaf inputs significantly reduced pH, with reductions most marked by invasive L. camara. Conductivity was heightened by all leaf input treatments, except native T. sericea. Leaf inputs significantly affected all nutrient levels monitored in the water over time, except for silicate. In particular, leaf litter from invasive L. camara drove significantly increased nutrient concentrations compared to other native plant species, whilst effects of invasive P. guajava were less statistically clear. The end weights of the leaf litter demonstrated decomposition differences among the species types, following a decreasing order of P. guajava 〉 T. sericea 〉 F. sycomorus 〉 L. camara, further suggesting high organic inputs from invasive L. camara. The study results highlight that differential leaf litter decomposition rates of four plant species can play a significant role in nutrient release, in turn altering aquatic ecosystem productivity. However, these effects likely depend on species-specific differences, rather than between invasive–native species generally. Shifting terrestrial plant communities may alter aquatic community composition, but specific effects are likely associated with leaf traits

Description: Terrestrial plants are known to “garden” the microbiota of their rhizosphere via released metabolites (that can attract beneficial microbes and deter pathogenic microbes). Such a “gardening” capacity is also known to be dynamic in plants. Although microbial “gardening” has been recently demonstrated for seaweeds, we do not know whether this capacity is a dynamic property in any aquatic flora like in terrestrial plants. Here, we tested the dynamic microbial “gardening” capacity of seaweeds using the model invasive red seaweed Agarophyton vermiculophyllum. Following an initial extraction of surface-associated metabolites (immediately after field collection), we conducted a long-term mesocosm experiment for 5 months to test the effect of two different salinities (low = 8.5 and medium = 16.5) on the microbial “gardening” capacity of the alga over time. We tested “gardening” capacity of A. vermiculophyllum originating from two different salinity levels (after 5 months treatments) in settlement assays against three disease causing pathogenic bacteria and seven protective bacteria. We also compared the capacity of the alga with field-collected samples. Abiotic factors like low salinity significantly increased the capacity of the alga to deter colonization by pathogenic bacteria while medium salinity significantly decreased the capacity of the alga over time when compared to field-collected samples. However, capacity to attract beneficial bacteria significantly decreased at both tested salinity levels when compared to field-collected samples. Dynamic microbial “gardening” capacity of a seaweed to attract beneficial bacteria and deter pathogenic bacteria is demonstrated for the first time. Such a dynamic capacity as found in the current study could also be applicable to other aquatic host–microbe interactions. Our results may provide an attractive direction of research towards manipulation of salinity and other abiotic factors leading to better defended A. vermiculophyllum towards pathogenic bacteria thereby enhancing sustained production of healthy A. vermiculophyllum in farms

Description: Ascidians and their associated microbiota are prolific producers of bioactive marine natural products. Recent culture-independent studies have revealed that the tunic of the solitary ascidian Ciona intestinalis (sea vase) is colonized by a diverse bacterial community, however, the biotechnological potential of this community has remained largely unexplored. In this study, we aimed at isolating the culturable microbiota associated with the tunic of C. intestinalis collected from the North and Baltic Seas, to investigate their antimicrobial and anticancer activities, and to gain first insights into their metabolite repertoire. The tunic of the sea vase was found to harbor a rich microbial community, from which 89 bacterial and 22 fungal strains were isolated. The diversity of the tunic-associated microbiota differed from that of the ambient seawater samples, but also between sampling sites. Fungi were isolated for the first time from the tunic of Ciona. The proportion of bioactive extracts was high, since 45% of the microbial extracts inhibited the growth of human pathogenic bacteria, fungi or cancer cell lines. In a subsequent bioactivity-and metabolite profiling-based approach, seven microbial extracts were prioritized for in-depth chemical investigations. Untargeted metabolomics analyses of the selected extracts by a UPLC-MS/MS-based molecular networking approach revealed a vast chemical diversity with compounds assigned to 22 natural product families, plus many metabolites that remained unidentified. This initial study indicates that bacteria and fungi associated with the tunic of C. intestinalis represent an untapped source of putatively new marine natural products with pharmacological relevance.

Description: Here we present the first radiometric age and geochemical (major and trace element and isotope) data for samples from the Hydrographer Ridge, a back arc volcano of the Kurile Island Arc, and a newly discovered chain of volcanoes (“Sonne Volcanoes”) on the northwestern continental slope of the Kurile Basin on the opposite side of the arc. The 40Ar/39Ar age and geochemical data show that Hydrographer Ridge (3.2–3.3 Ma) and the “Sonne Volcanoes” (25.3–25.9 Ma) have very similar trace element and isotope characteristics to those of the Kurile Island Arc, indicating derivation from a common magma source. We conclude that the age of the “Sonne Volcanoes” marks the time of opening of the Kurile Basin, implying slow back arc spreading rates of 1.3–1.8 cm/y. Combined with published data from the Kurile fore arc, our data suggest that the processes of subduction, Kurile Basin opening and frontal arc extension occurred synchronously and that extension in the rear part and in the frontal part of the Kurile Island Arc must have been triggered by the same mechanism.

Description: Massive fouling by the invasive ascidian Ciona intestinalis in Prince Edward Island (PEI, Canada) has been causing devastating losses to the local blue mussel farms. In order to gain first insights into so far unexplored factors that may contribute to the invasiveness of C. intestinalis in PEI, we undertook comparative microbiome and metabolome studies on specific tissues from C. intestinalis populations collected in invaded (PEI) and native regions (Helgoland and Kiel, Germany). Microbial community analyses and untargeted metabolomics revealed clear location- and tissue-specific patterns showing that biogeography and the sampled tissue shape the microbiome and metabolome of C. intestinalis. Moreover, we observed higher microbial and chemical diversity in C. intestinalis from PEI than in the native populations. Bacterial OTUs specific to C. intestinalis from PEI included Cyanobacteria (e.g., Leptolyngbya sp.) and Rhodobacteraceae (e.g., Roseobacter sp.), while populations from native sampling sites showed higher abundances of e.g., Firmicutes (Helgoland) and Epsilonproteobacteria (Kiel). Altogether 121 abundant metabolites were putatively annotated in the global ascidian metabolome, of which 18 were only detected in the invasive PEI population (e.g., polyketides and terpenoids), while six (e.g., sphingolipids) or none were exclusive to the native specimens from Helgoland and Kiel, respectively. Some identified bacteria and metabolites reportedly possess bioactive properties (e.g., antifouling and antibiotic) that may contribute to the overall fitness of C. intestinalis. Hence, this first study provides a basis for future studies on factors underlying the global invasiveness of Ciona species

Description: Mastermind is famous two-player game. The first player (codemaker) chooses a secret code which the second player (codebreaker) is supposed to crack within a minimum number of code guesses (queries). Therefore, the codemaker’s duty is to help the codebreaker by providing a well-defined error measure between the secret code and the guessed code after each query. We consider a variant, called Yes-No AB-Mastermind, where both secret code and queries must be repetition-free and the provided information by the codemaker only indicates if a query contains any correct position at all. For this Mastermind version with n positions and 𝑘≥𝑛 colors and ℓ:=𝑘+1−𝑛, we prove a lower bound of ∑𝑘𝑗=ℓlog2𝑗 and an upper bound of 𝑛log2𝑛+𝑘 on the number of queries necessary to break the secret code. For the important case 𝑘=𝑛, where both secret code and queries represent permutations, our results imply an exact asymptotic complexity of Θ(𝑛log𝑛) queries.

Description: The Atlantic Multidecadal Oscillation (AMO) is coherently linked to climate variations over many parts of the globe. Despite recent achievements, the mechanism by which the AMO influences regional precipitation over South America is not well understood. In this study, we isolate the atmospheric response to the AMO using a water isotope-enabled version of the Community Earth System Model version 1.2 (iCESM1.2) and determine its influence on (sub)tropical South American regional precipitation and atmospheric circulation. The results suggest an interhemispheric seesaw in Hadley circulation strength and that the section of the Atlantic Hadley cell is marked by a stronger upward air component south of the equator during the cold AMO phase. We also find that the precipitation anomalies over (sub)tropical South America during AMO phases are mainly related to changes in the Atlantic Intertropical Convergence Zone (ITCZ) core strength, where in the cold (warm) AMO phase the core region strengthens (weakens) from February to July, while from July to November the core region weakens (strengthens). Our results stress the importance of acknowledging the dynamics of season- and regional-dependent ITCZ responses, as they are sufficient to produce observed AMO-related signals even in the absence of marked changes in the ITCZ position.

Description: Military munitions from World War I and II dumped at the seafloor are a threat to the marine environment and its users. Decades of saltwater exposure make the explosives fragile and difficult to dispose of. If required, the munition is blast-in-place. In August 2019, 42 ground mines were detonated in a controlled manner underwater during a NATO maneuver in the German Natura2000 Special Area of Conservation Fehmarn Belt, the Baltic Sea. In June 2020, four detonation craters were investigated with a multibeam echosounder for the first time. This dataset is represented here as maps of bathymetry, slope angle, and height difference to the surrounding. The circular craters were still clearly visible a year after the detonation. The diameter and depth of the structures were between 7.5–12.6 m and 0.7–2.2 m, respectively. In total, about 321 m2 of the seafloor was destroyed along the track line.

Description: It is widely accepted that the commensal gut microbiota contributes to the health and well-being of its host. The solitary tunicate Ciona intestinalis emerges as a model organism for studying host–microbe interactions taking place in the gut, however, the potential of its gut-associated microbiota for marine biodiscovery remains unexploited. In this study, we set out to investigate the diversity, chemical space, and pharmacological potential of the gut-associated microbiota of C. intestinalis collected from the Baltic and North Seas. In a culture-based approach, we isolated 61 bacterial and 40 fungal strains affiliated to 33 different microbial genera, indicating a rich and diverse gut microbiota dominated by Gammaproteobacteria. In vitro screening of the crude microbial extracts indicated their antibacterial (64% of extracts), anticancer (22%), and/or antifungal (11%) potential. Nine microbial crude extracts were prioritized for in-depth metabolome mining by a bioactivity- and chemical diversity-based selection procedure. UPLC-MS/MS-based metabolomics combining automated (feature-based molecular networking and in silico dereplication) and manual approaches significantly improved the annotation rates. A high chemical diversity was detected where peptides and polyketides were the predominant classes. Many compounds remained unknown, including two putatively novel lipopeptides produced by a Trichoderma sp. strain. This is the first study assessing the chemical and pharmacological profile of the cultivable gut microbiota of C. intestinalis

Description: The main objective of the present study was to assess the effects of sulfur (S) nutrition on plant growth, overall quality, secondary metabolites, and antibacterial and radical scavenging activities of hydroponically grown lettuce cultivars. Three lettuce cultivars, namely, Pazmanea RZ (green butterhead, V1), Hawking RZ (green multi-leaf lettuce, V2), and Barlach RZ (red multi-leaf, V3) were subjected to two S-treatments in the form of magnesium sulfate (+S) or magnesium chloride (−S). Significant differences were observed under −S treatments, especially among V1 and V2 lettuce cultivars. These responses were reflected in the yield, levels of macro- and micro-nutrients, water-soluble sugars, and free inorganic anions. In comparison with the green cultivars (V1 and V2), the red-V3 cultivar revealed a greater acclimation to S starvation, as evidenced by relative higher plant growth. In contrast, the green cultivars showed higher capabilities in production and superior quality attributes under +S condition. As for secondary metabolites, sixteen compounds (e.g., sesquiterpene lactones, caffeoyl derivatives, caffeic acid hexose, 5-caffeoylquinic acid (5-OCQA), quercetin and luteolin glucoside derivatives) were annotated in all three cultivars with the aid of HPLC-DAD-MS-based untargeted metabolomics. Sesquiterpene lactone lactucin and anthocyanin cyanidin 3-O-galactoside were only detected in V1 and V3 cultivars, respectively. Based on the analyses, the V3 cultivar was the most potent radical scavenger, while V1 and V2 cultivars exhibited antibacterial activity against Staphylococcus aureus in response to S provision. Our study emphasizes the critical role of S nutrition in plant growth, acclimation, and nutritional quality. The judicious-S application can be adopted as a promising antimicrobial prototype for medical applications.

Description: Six-degree-of-freedom (6DoF) sensors measure translation along three axes and rotation around three axes. These collocated measurements make it possible to fully describe building motion without the need for an external reference point. This is an advantage for building health monitoring, which uses interstory drift and building eigenfrequencies to monitor stability. In this paper, IMU50 6DoF sensors are characterized to determine their suitability for building health monitoring. The sensors are calibrated using step table methods and by comparison with earth’s rotation and gravity. These methods are found to be comparable. The sensor’s self-noise is examined through the power spectral density and the Allan deviation of data recorded in a quiet environment. The effect of temperature variation is tested between 14 and 50 ∘C. It appears that the self-noise of the rotation components increases while the self-noise of the acceleration components decreases with temperature. The comparison of the sensor self-noise with ambient building signal and higher amplitude shaking shows that these sensors are in general not sensitive enough for ambient signal building health monitoring in the frequency domain, but could be useful for monitoring interstory drift and building motion during, for example, strong earthquake shaking in buildings similar to those examined here.

Description: The Persian Gulf is a unique and biologically diverse marine environment dominated by invertebrates. In continuation of our research interest in the chemistry and biological activity of marine sponges from the Persian Gulf, we selected the excavating sponge Cliona celata for detailed metabolome analyses, in vitro bioactivity screening, and chemical isolation studies. A UPLC-MS/MS (MS2) molecular-networking-based dereplication strategy allowed annotation and structural prediction of various diketopiperazines (DKPs) and etzionin-type diketopiperazine hydroxamates (DKPHs) in the crude sponge extract. The molecular-networking-guided isolation approach applied to the crude extract afforded the DKPH etzionin (1) and its two new derivatives, clioetzionin A (2) and clioetzionin B (3). Another new modified DKP (4) was identified by MS/MS analyses but could not be isolated in sufficient quantities to confirm its structure. The chemical characterization of the purified DKPHs 1–3 was performed by a combination of 1D and 2D NMR spectroscopy, HRMS, HRMS/MS, and [α]D analyses. Compounds 1 and 2 exhibited broad antibacterial, antifungal, and anticancer activities, with IC50 values ranging from 19.6 to 159.1 µM. This is the first study investigating the chemical constituents of a C. celata specimen from the Persian Gulf. It is also the first report of full spectroscopic data of etzionin based on extensive spectroscopic analyses

Description: Ocean warming and acidification pose serious threats to cold-water corals (CWCs) and the surrounding habitat. Yet, little is known about the role of natural short-term and seasonal environmental variability, which could be pivotal to determine the resilience of CWCs in a changing environment. Here, we provide continuous observational data of the hydrodynamic regime (recorded using two benthic landers) and point measurements of the carbonate and nutrient systems from five Lophelia pertusa reefs in the Langenuen Fjord, southwestern Norway, from 2016 to 2017. In this fjord setting, we found that over a tidal (〈24 h) cycle during winter storms, the variability of measured parameters at CWC depths was comparable to the intra-annual variability, demonstrating that single point measurements are not sufficient for documenting (and monitoring) the biogeochemical conditions at CWC sites. Due to seasonal and diurnal forcing, parts of the reefs experienced temperatures up to 4 °C warmer (i.e., 〉12 °C) than the mean conditions and high CT concentrations of 20 µmol kg−1 over the suggested threshold for healthy CWC reefs (i.e., 〉2170 µmol kg−1). Combined with hindcast measurements, our findings indicate that these shallow fjord reefs may act as an early hotspot for ocean warming and acidification. We predict that corals in Langenuen will face seasonally high temperatures (〉18 °C) and hypoxic and corrosive conditions within this century. Therefore, these fjord coral communities could forewarn us of the coming consequences of climate change on CWC diversity and function.

Description: Previous studies with Baltic Sea phytoplankton combining elevated seawater temperature with CO2 revealed the importance of size trait‐based analyses, in particular dividing the plankton into edible (〉5 and 〈100 μm) and inedible ([removed]100 μm) size classes for mesozoopankton grazers. While the edible phytoplankton responded predominantly negative to warming and the inedible group stayed unaffected or increased, independent from edibility most phytoplankton groups gained from CO2. Because the ratio between edible and inedible taxa changes profoundly over seasons, we investigated if community responses can be predicted according to the prevailing composition of edible and inedible groups. We experimentally explored the combined effects of elevated temperatures and CO2 concentrations on a late‐summer Baltic Sea community. Total phytoplankton significantly increased in response to elevated CO2 in particular in combination with temperature, driven by a significant gain of the inedible 〈5 μm fraction and large filamentous cyanobacteria. Large flagellates disappeared. The edible group was low as usual in summer and decreased with both factors due to enhanced copepod grazing and overall decline of small flagellates. Our results emphasize that the responses of summer communities are complex, but can be predicted by the composition and dominance of size classes and groups.

Description: Current trends in the global climate facilitate the displacement of numerous marine species from their native distribution ranges to higher latitudes when facing warming conditions. In this work, we analyzed occurrences of a circumtropical reef fish, the spotfin burrfish, Chilomycterus reticulatus (Linnaeus, 1958), in the Madeira Archipelago (NE Atlantic) between 1898 and 2021. In addition to available data sources, we performed an online survey to assess the distribution and presence of this species in the Madeira Archipelago, along with other relevant information, such as size class and year of the first sighting. In total, 28 valid participants responded to the online survey, georeferencing 119 C. reticulatus sightings and confirming its presence in all archipelago islands. The invasiveness of the species was screened using the Aquatic Species Invasiveness Screening Kit. Five assessments rated the fish as being of medium risk of establishing a local population and becoming invasive. Current temperature trends might have facilitated multiple sightings of this thermophilic species in the Madeira Archipelago. The present study indicates an increase in C. reticulatus sightings in the region. This underlines the need for updated comprehensive information on species diversity and distribution to support informed management and decisions. The spread of yet another thermophilic species in Madeiran waters provides further evidence of an ongoing tropicalization, emphasizing the need for monitoring programs and the potential of citizen science in complementing such programs.

Description: Ocean science and hydroacoustic seafloor mapping rely on accurate navigation underwater. By exploiting terrain information provided by a multibeam echosounder system, it is possible to significantly improve map quality. This article presents an algorithm capable of improving map quality and accuracy by aligning consecutive pings to tiles that are matched pairwise. A globally consistent solution is calculated from these matches. The proposed method has the potential to be used online in addition to other navigation solutions, but is mainly targeted for post processing. The algorithm was tested using different parameter settings on an AUV and a ship-based dataset. The ship-based dataset is publicly available as a benchmark. The original accurate navigation serving as a ground truth, alongside trajectories that include an artificial drift, are available. This allows quantitative comparisons between algorithms and parameter settings.

Description: Understanding trophic interactions is essential for the prediction and measurement of structure and function in aquatic environments. Communities in these ecosystems may be shaped by variables such as predator diversity, prey density and emergent multiple predator effects (MPEs), which are likely to influence trophic dynamics. In this study, we examined the effect of key predatory fish in floodplain wetlands, namely Oreochromis mossambicus and Enteromius paludinosus, towards Chironomidae prey, using a comparative functional response (FR) approach. We used single predator species as well as intra- and interspecific paired species to contrast FRs under multiple predator scenarios. Attack rate and handling time estimates from single predator FRs were used to predict multiple predators’ feeding rates, which were compared to observe multiple predators’ feeding rates to quantify potential MPEs. From single fish trials, each species displayed a significant Type II FR, characterized by high feeding rates at low prey densities. Oreochromis mossambicus had a steeper (initial slope, i.e., higher attack rate) and higher (asymptote of curve, i.e., shorter handling time and higher maximum feeding rate) FR, whereas E. paludinosus exhibited lower-magnitude FRs (i.e., lower attack rate, longer handling time and lower feeding rate). In multiple predator scenarios, feeding rates were well-predicted by those of single predators, both in conspecific and interspecific pairs, and thus we did not find evidence for antagonistic or synergistic MPEs. Predator–prey interactions in wetland systems can have significant consequences on the structure and dynamics of ecological communities. In turn, this could have destabilizing effects on resources in tropical wetlands. These results, although experimental, help us understand how trophic interaction among conspecific or interspecific fish species in Austral tropical wetlands might influence their aquatic prey species. This will help us to understand food web dynamics better.

Description: Seaweed endophytic (algicolous) fungi are talented producers of bioactive natural products. We have previously isolated two strains of the endophytic fungus, Pyrenochaetopsis sp. FVE-001 and FVE-087, from the thalli of the brown alga Fucus vesiculosus. Initial chemical studies yielded four new decalinoylspirotetramic acid derivatives with antimelanoma activity, namely pyrenosetins A–C (1–3) from Pyrenochaetopsis sp. strain FVE-001, and pyrenosetin D (4) from strain FVE-087. In this study, we applied a comparative metabolomics study employing HRMS/MS based feature-based molecular networking (FB MN) on both Pyrenochaetopsis strains. A higher chemical capacity in production of decalin derivatives was observed in Pyrenochaetopsis sp. FVE-087. Notably, several decalins showed different retention times despite the same MS data and MS/MS fragmentation pattern with the previously isolated pyrenosetins, indicating they may be their stereoisomers. FB MN-based targeted isolation studies coupled with antimelanoma activity testing on the strain FVE-087 afforded two new stereoisomers, pyrenosetins E (5) and F (6). Extensive NMR spectroscopy including DFT computational studies, HR-ESIMS, and Mosher’s ester method were used in the structure elucidation of compounds 5 and 6. The 3′R,5′R stereochemistry determined for compound 6 was identical to that previously reported for pyrenosetin C (3), whose stereochemistry was revised as 3′S,5′R in this study. Pyrenosetin E (5) inhibited the growth of human malignant melanoma cells (A-375) with an IC50 value of 40.9 μM, while 6 was inactive. This study points out significant variations in the chemical repertoire of two closely related fungal strains and the versatility of FB MN in identification and targeted isolation of stereoisomers. It also confirms that the little-known fungal genus Pyrenochaetopsis is a prolific source of complex decalinoylspirotetramic acid derivatives.

Description: Machine learning spatial modeling is used for mapping the distribution of deep-sea polymetallic nodules (PMN). However, the presence and influence of spatial autocorrelation (SAC) have not been extensively studied. SAC can provide information regarding the variable selection before modeling, and it results in erroneous validation performance when ignored. ML models are also problematic when applied in areas far away from the initial training locations, especially if the (new) area to be predicted covers another feature space. Here, we study the spatial distribution of PMN in a geomorphologically heterogeneous area of the Peru Basin, where SAC of PMN exists. The local Moran’s I analysis showed that there are areas with a significantly higher or lower number of PMN, associated with different backscatter values, aspect orientation, and seafloor geomorphological characteristics. A quantile regression forests (QRF) model is used using three cross-validation (CV) techniques (random-, spatial-, and cluster-blocking). We used the recently proposed “Area of Applicability” method to quantify the geographical areas where feature space extrapolation occurs. The results show that QRF predicts well in morphologically similar areas, with spatial block cross-validation being the least unbiased method. Conversely, random-CV overestimates the prediction performance. Under new conditions, the model transferability is reduced even on local scales, highlighting the need for spatial model-based dissimilarity analysis and transferability assessment in new areas.

Description: Serum calcium isotopes (δ44/42Ca) have been suggested as a non-invasive and sensitive Ca balance marker. Quantitative δ44/42Ca changes associated with Ca flux across body compartment barriers relative to the dietary Ca and the correlation of δ44/42CaSerum with bone histology are unknown. We analyzed Ca and δ44/42Ca by mass-spectrometry in rats after two weeks of standard-Ca-diet (0.5%) and after four subsequent weeks of standard- and of low-Ca-diet (0.25%). In animals on a low-Ca-diet net Ca gain was 61 ± 3% and femur Ca content 68 ± 41% of standard-Ca-diet, bone mineralized area per section area was 68 ± 15% compared to standard-Ca-diet. δ44/42Ca was similar in the diets, and decreased in feces and urine and increased in serum in animals on low-Ca-diet. δ44/42CaBone was higher in animals on low-Ca-diet, lower in the diaphysis than the metaphysis and epiphysis, and unaffected by gender. Independent of diet, δ44/42CaBone was similar in the femora and ribs. At the time of sacrifice, δ44/42CaSerum inversely correlated with intestinal Ca uptake and histological bone mineralization markers, but not with Ca content and bone mineral density by µCT. In conclusion, δ44/42CaBone was bone site specific, but mechanical stress and gender independent. Low-Ca-diet induced marked changes in feces, serum and urine δ44/42Ca in growing rats. δ44/42CaSerum inversely correlated with markers of bone mineralization.

Description: Corals are globally important calcifiers that exhibit complex responses to anthropogenic warming and acidification. Although coral calcification is supported by high seawater pH, photosynthesis by the algal symbionts of zooxanthellate corals can be promoted by elevated pCO2. To investigate the mechanisms underlying corals’ complex responses to global change, three species of tropical zooxanthellate corals (Stylophora pistillata, Pocillopora damicornis, and Seriatopora hystrix) and one species of asymbiotic cold-water coral (Desmophyllum pertusum, syn. Lophelia pertusa) were cultured under a range of ocean acidification and warming scenarios. Under control temperatures, all tropical species exhibited increased calcification rates in response to increasing pCO2. However, the tropical species’ response to increasing pCO2 flattened when they lost symbionts (i.e., bleached) under the high-temperature treatments—suggesting that the loss of symbionts neutralized the benefit of increased pCO2 on calcification rate. Notably, the cold-water species that lacks symbionts exhibited a negative calcification response to increasing pCO2, although this negative response was partially ameliorated under elevated temperature. All four species elevated their calcifying fluid pH relative to seawater pH under all pCO2 treatments, and the magnitude of this offset (Δ[H+]) increased with increasing pCO2. Furthermore, calcifying fluid pH decreased along with symbiont abundance under thermal stress for the one species in which calcifying fluid pH was measured under both temperature treatments. This observation suggests a mechanistic link between photosymbiont loss (‘bleaching’) and impairment of zooxanthellate corals’ ability to elevate calcifying fluid pH in support of calcification under heat stress. This study supports the assertion that thermally induced loss of photosymbionts impairs tropical zooxanthellate corals’ ability to cope with CO2-induced ocean acidification.

Description: Microbial co-cultivation is a promising approach for the activation of biosynthetic gene clusters (BGCs) that remain transcriptionally silent under artificial culture conditions. As part of our project aiming at the discovery of marine-derived fungal agrochemicals, we previously used four phytopathogens as model competitors in the co-cultivation of 21 marine fungal strains. Based on comparative untargeted metabolomics analyses and anti-phytopathogenic activities of the co-cultures, we selected the co-culture of marine Cosmospora sp. with the phytopathogen Magnaporthe oryzae for in-depth chemical studies. UPLC-MS/MS-based molecular networking (MN) of the co-culture extract revealed an enhanced diversity of compounds in several molecular families, including isochromanones, specifically induced in the co-culture. Large scale co-cultivation of Cosmospora sp. and M. oryzae resulted in the isolation of five isochromanones from the whole co-culture extract, namely the known soudanones A, E, D (1-3) and their two new derivatives, soudanones H-I (4-5), the known isochromans, pseudoanguillosporins A and B (6, 7), naphtho-γ-pyrones, cephalochromin and ustilaginoidin G (8, 9), and ergosterol (10). Their structures were established by NMR, HR-ESIMS, FT-IR, electronic circular dichroism (ECD) spectroscopy, polarimetry ([α]D), and Mosher’s ester reaction. Bioactivity assays revealed antimicrobial activity of compounds 2 and 3 against the phytopathogens M. oryzae and Phytophthora infestans, while pseudoanguillosporin A (6) showed the broadest and strongest anti-phytopathogenic activity against Pseudomonas syringae, Xanthomonas campestris, M. oryzae and P. infestans. This is the first study assessing the anti-phytopathogenic activities of soudanones.

Description: Two linear proline-rich peptides (1–2), bearing an N-terminal pyroglutamate, were isolated from the marine bacterium Microbacterium sp. V1, associated with the marine sponge Petrosia ficiformis, collected in the volcanic CO2 vents in Ischia Island (South Italy). Peptide production was triggered at low temperature following the one strain many compounds (OSMAC) method. Both peptides were detected together with other peptides (3–8) via an integrated, untargeted MS/MS-based molecular networking and cheminformatic approach. The planar structure of the peptides was determined by extensive 1D and 2D NMR and HR-MS analysis, and the stereochemistry of the aminoacyl residues was inferred by Marfey’s analysis. Peptides 1–8 are likely to arise from Microbacterium V1 tailor-made proteolysis of tryptone. Peptides 1 and 2 were shown to display antioxidant properties in the ferric-reducing antioxidant power (FRAP) assay.

Description: Several strains of a Gram-negative, anaerobic photoautotrophic, motile, rod-shaped bacterium, designated as B14B, A-7R, and A-7Y were isolated from biofilms of low-mineralized soda lakes in central Mongolia and Russia (southeast Siberia). They had lamellar stacks as photosynthetic structures and bacteriochlorophyll a as the major photosynthetic pigment. The strains were found to grow at 25–35 °C, pH 7.5–10.2 (optimum, pH 9.0), and with 0–8% (w/v) NaCl (optimum, 0%). In the presence of sulfide and bicarbonate, acetate, butyrate, yeast extract, lactate, malate, pyruvate, succinate, and fumarate promoted growth. The DNA G + C content was 62.9–63.0 mol%. While the 16S rRNA gene sequences confirmed that the new strains belonged to the genus Ectothiorhodospira of the Ectothiorhodospiraceae, comparison of the genome nucleotide sequences of strains B14B, A-7R, and A-7Y revealed that the new isolates were remote from all described Ectothiorhodospira species both in dDDH (19.7–38.8%) and in ANI (75.0–89.4%). The new strains are also genetically differentiated by the presence of a nitric oxide reduction pathway that is lacking from all other Ectiothiorhodospiraceae. We propose to assign the isolates to the new species, Ectothiorhodospira lacustris sp. nov., with the type strain B14BT (=DSM 116064T = KCTC 25542T = UQM 41491T).

Description: Marine heatwaves (MHWs) are extreme events characterized by abnormally high sea surface temperatures, and they have significant impacts on marine ecosystems and human society. The rapid and accurate forecasting of MHWs is crucial for preventing and responding to the impacts they can lead to. However, the research on relevant forecasting methods is limited, and a dedicated forecasting system specifically tailored for the South China Sea (SCS) region has yet to be reported. This study proposes a novel forecasting system utilizing U-Net and ConvLSTM models to predict MHWs in the SCS. Specifically, the U-Net model is used to forecast the intensity of MHWs, while the ConvLSTM model is employed to predict the probability of their occurrence. The indication of an MHW relies on both the intensity forecasted by the U-Net model exceeding threshold T and the occurrence probability predicted by the ConvLSTM model surpassing threshold P. Incorporating sensitivity analysis, optimal thresholds for T are determined as 0.9 °C, 0.8 °C, 1.0 °C, and 1.0 °C for 1-, 3-, 5-, and 7-day forecast lead times, respectively. Similarly, optimal thresholds for P are identified as 0.29, 0.30, 0.20, and 0.28. Employing these thresholds yields the highest forecast accuracy rates of 0.92, 0.89, 0.88, and 0.87 for the corresponding forecast lead times. This innovative approach gives better predictions of MHWs in the SCS, providing invaluable reference information for marine management authorities to make well-informed decisions and issue timely MHW warnings.

Description: Mesoscale eddies are ubiquitous in the ocean, yet our understanding of their evolutions, particularly eddy merging processes, remains enigmatic. In this study, the merging processes of two cyclonic–cyclonic and two anticyclonic–anticyclonic eddies are analyzed in the Subtropical Northwest Pacific using satellite remote sensing altimetry data. The results reveal that, as eddies approach each other, their contours become connected, leading to the formation of multi-core eddies. Simultaneously, the merging process prompts substantial exchanges of energy and vorticity, resulting in the dissipation of one eddy and the emergence of a more extensive merged eddy. Throughout the merging process, the eddy contours elongate upwards along the centerline (the line connecting eddy centers) and there are distinct changes in both the horizontal and vertical morphology of the eddies. Notably, after the merging, the eddies distinctly exhibit intensified signals of sea surface temperature and vertical temperature anomaly, an outcome of their transformative fusion. The findings of this study significantly enhance our understanding of mesoscale eddy dynamics, particularly in the intricate eddy merging process. However, it is important to note that, due to limitations in vertical observational data, this study does not provide a quantitative portrayal of the vertical mechanisms of eddy merging, which also underscores a pivotal avenue for future research in the field.

Description: In this work, water extracts from different bio-based products of plant origin were studied to evaluate their antioxidant capacity and their potential to form metal nanoparticles from aqueous solutions. Two traditional tests, the Folin–Ciocalteu assay and the DPPH radical scavenging capacity method were compared with a more recent one, SNPAC, based on the formation of silver nanoparticles. The silver nanoparticle antioxidant capacity method (SNPAC) was optimized for its application in the characterization of the extracts selected in this work; kinetic studies and extract concentration were also evaluated. The extracts were obtained from leaves of oak, eucalyptus, green tea, white and common thyme, white cedar, mint, rosemary, bay, lemon, and the seaweed Sargassum muticum. The results demonstrate that any of these three methods can be used as a quick test to identify an extract to be employed for nanoparticle formation. Additionally, we studied the synthesis of Cu, Fe, Pb, Ni, and Ag nanoparticles using eucalyptus extracts demonstrating the efficiency of this plant extract to form metallic nanoparticles from aqueous metal salt solutions. Metal nanoparticles were characterized by transmission electron microscopy and dynamic light scattering techniques.

Description: The Lagrangian dispersion statistics of the Black Sea are estimated using satellite-tracked drifters, satellite altimeter data and a high-resolution ocean model. Comparison between the in-situ measurements and the model reveals good agreement in terms of the surface dispersion. The mean sub-basin coherent structures and currents of the Black Sea are well reproduced by the model. Seasonal variability of the dispersion in the upper (15 m), intermediate (150 m) and deep (750 m) layers are discussed with a special focus of the role of sub-basin scale structures and currents on the turbulent dispersion regimes. In terms of the surface relative dispersion, the results show the presence of the three known turbulent exponential, Richardson and diffusive-like regimes. The non-local exponential regime is only detected by the model for scales 〈10 km, while the local Richardson regime occurs between 10 and 100 km in all cases due to the presence of an inverse energy cascade range, and the diffusive-like regime is well detected for the largest distance by drifters (100–300 km) in winter/spring. Regarding the surface absolute dispersion, it reflects the occurrence of both quasi-ballistic and random-walk regimes at small and large times, respectively, while the two anomalous hyperbolic (5/4) and elliptic (5/3) regimes, which are related to the topology of the Black Sea, are detected at intermediate times. At depth, the signatures of the relative and absolute dispersion regimes shown in the surface layer are still valid in most cases. The absolute dispersion is anisotropic; the zonal component grows faster than the meridional component in any scenario.

Description: Phytoplankton cell size is important for a multitude of functional traits such as growth rates, storage capabilities, and resistance to grazing. Because these response traits are correlated, selective effects on mean community cell size of one environmental factor should impact the ability of phytoplankton to cope with other factors. Here, we experimentally apply expectations on the functional importance of phytoplankton cell size to the community level. We used a natural marine plankton community, and first altered the community’s cell size structure by exposing it to six different grazer densities. The size-shifted communities were then treated with a saturated nutrient pulse to test how the changes in community size structure influenced the mean community growth rate in the short-term (day 1–3) and nutrient storage capacity in the postbloom phase. Copepod grazing reduced the medium-sized phytoplankton and increased the share of the smallest (〈10 µm3 ) and the largest (〉100,000 µm3 ). Communities composed of on average small cells grew faster in response to the nutrient pulse, and thus confirmed the previously suggested growth advantage of small cells for the community level. In contrast, larger phytoplankton showed better storage capabilities, reflected in a slower post-bloom decline of communities that were on average composed of larger cells. Our findings underline that the easily measurable mean cell size of a taxonomically complex phytoplankton community can be used as an indicator trait to predict phytoplankton responses to sequential environmental changes.

Description: Accurate, on-site determinations of macronutrients (phosphate (PO43−), nitrate (NO3−), and silicic acid (H4SiO4)) in seawater in real time are essential to obtain information on their distribution, flux, and role in marine biogeochemical cycles. The development of robust sensors for long-term on-site analysis of macronutrients in seawater is a great challenge. Here, we present improvements of a commercial automated sensor for nutrients (including PO43−, H4SiO4, and NO2− plus NO3−), suitable for a variety of aquatic environments. The sensor uses the phosphomolybdate blue method for PO43−, the silicomolybdate blue method for H4SiO4 and the Griess reagent method for NO2−, modified with vanadium chloride as reducing agent for the determination of NO3−. Here, we report the optimization of analytical conditions, including reaction time for PO43− analysis, complexation time for H4SiO4 analysis, and analyte to reagent ratio for NO3− analysis. The instrument showed wide linear ranges, from 0.2 to 100 μM PO43−, between 0.2 and 100 μM H4SiO4, from 0.5 to 100 μM NO3−, and between 0.4 and 100 μM NO2−, with detection limits of 0.18 μM, 0.15 μM, 0.45 μM, and 0.35 μM for PO43−, H4SiO4, NO3−, and NO2−, respectively. The analyzer showed good precision with a relative standard deviation of 8.9% for PO43−, 4.8% for H4SiO4, and 7.4% for NO2− plus NO3− during routine analysis of certified reference materials (KANSO, Japan). The analyzer performed well in the field during a 46-day deployment on a pontoon in the Kiel Fjord (located in the southwestern Baltic Sea), with a water supply from a depth of 1 m. The system successfully collected 443, 440, and 409 on-site data points for PO43−, Σ(NO3− + NO2−), and H4SiO4, respectively. Time series data agreed well with data obtained from the analysis of discretely collected samples using standard reference laboratory procedures and showed clear correlations with key hydrographic parameters throughout the deployment period.

Description: Critical questions exist regarding the abundance and, especially, the export of picophytoplankton (≤2 µm diameter) in the Arctic. These organisms can dominate chlorophyll concentrations in Arctic regions, which are subject to rapid change. The picoeukaryotic prasinophyte Micromonas grows in polar environments and appears to constitute a large, but variable, proportion of the phytoplankton in these waters. Here, we analyze 81 samples from the upper 100 m of the water column from the Fram Strait collected over multiple years (2009–2015). We also analyze sediment trap samples to examine picophytoplankton contributions to export, using both 18S rRNA gene qPCR and V1-V2 16S rRNA Illumina amplicon sequencing to assess the Micromonas abundance within the broader diversity of photosynthetic eukaryotes based on the phylogenetic placement of plastid-derived 16S amplicons. The material sequenced from the sediment traps in July and September 2010 showed that 11.2 ± 12.4% of plastid-derived amplicons are from picoplanktonic prasinophyte algae and other green lineage (Viridiplantae) members. In the traps, Micromonas dominated (83.6% ± 21.3%) in terms of the overall relative abundance of Viridiplantae amplicons, specifically the species Micromonas polaris. Temporal variations in Micromonas abundances quantified by qPCR were also observed, with higher abundances in the late-July traps and deeper traps. In the photic zone samples, four prasinophyte classes were detected in the amplicon data, with Micromonas again being the dominant prasinophyte, based on the relative abundance (89.4% ± 8.0%), but with two species (M. polaris and M. commoda-like) present. The quantitative PCR assessments showed that the photic zone samples with higher Micromonas abundances (〉1000 gene copies per mL) had significantly lower standing stocks of phosphate and nitrate, and a shallower average depth (20 m) than those with fewer Micromonas. This study shows that despite their size, prasinophyte picophytoplankton are exported to the deep sea, and that Micromonas is particularly important within this size fraction in Arctic marine ecosystems.

Description: The Arctic is warming 2–3 times faster than the global average, leading to a decrease in Arctic sea ice extent, thickness, and associated changes in sea ice structure. These changes impact sea ice habitat properties and the ice-associated ecosystems. Sea-ice algal blooms provide various algal-derived carbon sources for the bacterial and archaeal communities within the sea ice. Here, we detail the transition of these communities from winter through spring to early summer during the Norwegian young sea ICE (N-ICE2015) expedition. The winter community was dominated by the archaeon Candidatus Nitrosopumilus and bacteria belonging to the Gammaproteobacteria (Colwellia, Kangiellaceae, and Nitrinocolaceae), indicating that nitrogen-based metabolisms, particularly ammonia oxidation to nitrite by Cand. Nitrosopumilus was prevalent. At the onset of the vernal sea-ice algae bloom, the community shifted to the dominance of Gammaproteobacteria (Kangiellaceae, Nitrinocolaceae) and Bacteroidia (Polaribacter), while Cand. Nitrosopumilus almost disappeared. The bioinformatically predicted carbohydrate-active enzymes increased during spring and summer, indicating that sea-ice algae-derived carbon sources are a strong driver of bacterial and archaeal community succession in Arctic sea ice during the change of seasons. This implies a succession from a nitrogen metabolism-based winter community to an algal-derived carbon metabolism-based spring/ summer community.

Description: A vision for the establishment of a Geopark in Jordan is given in this work, with a subsequent application to the UNESCO Global Geopark programme. The Dead Sea area and its surroundings have suffered strong changes in the last decades, accompanied by a variety of natural hazards related to enhanced erosional processes. The aspiring Geopark will thematically encompass the influence that these changes and related natural hazards, including flash floods and subsidence, have had on the local population, from geological, over historical up to recent times. The hydrogeology and geomorphology, i.e., the connection between erosion by water, dissolution of minerals, and landscape evolution, will be the main guiding theme that connects the Eastern Rim Highlands with the Dead Sea rift valley through ephemeral wadis, vegetated springs areas, and traditionally communities. The creation of the Geopark is aimed at holistic, sustainable development and management of the area by eco-tourism, and includes education on water resource management, hazard awareness and resilience, as well as international research. We here present the conceptual approach to the initial development of a Geopark network in Jordan. In a narrative discourse, we highlight realised and further implementation steps, with an evaluation of the expected timeline, potential partner institutions, regional involvement and the chances for realisation.

Description: Deep learning has been successfully applied to many classification problems including underwater challenges. However, a long-standing issue with deep learning is the need for large and consistently labeled datasets. Although current approaches in semi-supervised learning can decrease the required amount of annotated data by a factor of 10 or even more, this line of research still uses distinct classes. For underwater classification, and uncurated real-world datasets in general, clean class boundaries can often not be given due to a limited information content in the images and transitional stages of the depicted objects. This leads to different experts having different opinions and thus producing fuzzy labels which could also be considered ambiguous or divergent. We propose a novel framework for handling semi-supervised classifications of such fuzzy labels. It is based on the idea of overclustering to detect substructures in these fuzzy labels. We propose a novel loss to improve the overclustering capability of our framework and show the benefit of overclustering for fuzzy labels. We show that our framework is superior to previous state-of-the-art semi-supervised methods when applied to real-world plankton data with fuzzy labels. Moreover, we acquire 5 to 10% more consistent predictions of substructures.

Description: Image annotation is a time-consuming and costly task. Previously, we published MorphoCluster as a novel image annotation tool to address problems of conventional, classifier-based image annotation approaches: their limited efficiency, training set bias and lack of novelty detection. MorphoCluster uses clustering and similarity search to enable efficient, computer-assisted image annotation. In this work, we provide a deeper analysis of this approach. We simulate the actions of a MorphoCluster user to avoid extensive manual annotation runs. This simulation is used to test supervised, unsupervised and transfer representation learning approaches. Furthermore, shrunken k-means and partially labeled k-means, two new clustering algorithms that are tailored specifically for the MorphoCluster approach, are compared to the previously used HDBSCAN*. We find that labeled training data improve the image representations, that unsupervised learning beats transfer learning and that all three clustering algorithms are viable options, depending on whether completeness, efficiency or runtime is the priority. The simulation results support our earlier finding that MorphoCluster is very efficient and precise. Within the simulation, more than five objects per simulated click are being annotated with 95% precision.

Description: Autonomous on-site monitoring of orthophosphate (PO43−), an important nutrient for primary production in natural waters, is urgently needed. Here, we report on the development and validation of an on-site autonomous electrochemical analyzer for PO43− in seawater. The approach is based on the use of flow injection analysis in conjunction with a dual electrochemical cell (i.e., a bi-potentiostat detector (FIA-DECD) that uses two working electrodes sharing the same reference and counter electrode. The two working electrodes are used (molybdate/carbon paste electrode (CPE) and CPE) to correct for matrix effects. Optimization of squarewave voltammetry parameters (including step potential, amplitude, and frequency) was undertaken to enhance analytical sensitivity. Possible interferences from non-ionic surfactants and humic acid were investigated. The limit of quantification in artificial seawater (30 g/L NaCl, pH 0.8) was 0.014 µM for a linear concentration range of 0.02–3 µM. The system used a Python script for operation and data processing. The analyzer was tested for ship-board PO43- determination during a four-day research cruise in the North Sea. The analyzer successfully measured 34 samples and achieved a good correlation (Pearson’ R = 0.91) with discretely collected water samples analyzed using a laboratory-based colorimetric reference analyzer.

Description: Epibacterial communities on seaweeds are affected by several abiotic factors such as temperature and acidification. Due to global warming, surface seawater temperatures are expected to increase by 0.5–5 °C in the next century. However, how epibacterial communities associated with seaweeds will respond to global warming remains unknown. In this study, we investigated the response of epibacterial communities associated with the invasive Gracilaria vermiculophylla exposed to 3 °C above ambient temperature for 4 months using a benthocosm system in Kiel, Germany, and 16S rRNA gene amplicon sequencing. The results showed that elevated temperature affected the beta-diversity of the epibacterial communities. Some potential seaweed pathogens such as Pseudoalteromonas, Vibrio, Thalassotalea, and Acinetobacter were identified as indicator genera at the elevated temperature level. Thirteen core raw amplicon sequence variants in the elevated temperature group were the same as the populations distributed over a wide geographical range, indicating that these core ASVs may play an important role in the invasive G. vermicullophylla. Overall, this study not only contributes to a better understanding of how epibacterial communities associated with G. vermiculophylla may adapt to ocean warming, but also lays the foundation for further exploration of the interactions between G. vermiculophylla and its epimicrobiota.

Description: Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation.

Description: The development of new tools for assessing the health of cultured shellfish larvae is crucial for aquaculture industries to develop and refine hatchery methodologies. We established a large-volume ecotoxicology/health stressor trial, exposing mussel (Perna canaliculus) embryos to copper in the presence of ethylenediaminetetraacetic acid (EDTA). GC/MS-based metabolomics was applied to identify potential biomarkers for monitoring embryonic/larval health and to characterise mechanisms of metal toxicity. Cellular viability, developmental abnormalities, larval behaviour, mortality, and a targeted analysis of proteins involved in the regulation of reactive oxygen species were simultaneously evaluated to provide a complementary framework for interpretative purposes and authenticate the metabolomics data. Trace metal analysis and speciation modelling verified EDTA as an effective copper chelator. Toxicity thresholds for P. canaliculus were low, with 10% developmental abnormalities in D-stage larvae being recorded upon exposure to 1.10 μg·L−1 bioavailable copper for 66 h. Sublethal levels of bioavailable copper (0.04 and 1.10 μg·L−1) caused coordinated fluctuations in metabolite profiles, which were dependent on development stage, treatment level, and exposure duration. Larvae appeared to successfully employ various mechanisms involving the biosynthesis of antioxidants and a restructuring of energy-related metabolism to alleviate the toxic effects of copper on cells and developing tissues. These results suggest that regulation of trace metal-induced toxicity is tightly linked with metabolism during the early ontogenic development of marine mussels. Lethal-level bioavailable copper (50.3 μg·L−1) caused severe metabolic dysregulation after 3 h of exposure, which worsened with time, substantially delayed embryonic development, induced critical oxidative damage, initiated the apoptotic pathway, and resulted in cell/organism death shortly after 18 h of exposure. Metabolite profiling is a useful approach to (1) assess the health status of marine invertebrate embryos and larvae, (2) detect early warning biomarkers for trace metal contamination, and (3) identify novel regulatory mechanisms of copper-induced toxicity.

Description: Ocean acidification (OA) has provoked changes in the carbonate saturation state that may alter the formation and structural biomineralisation of calcium carbonate exoskeletons for marine organisms. Biomineral production in organisms such as cold-water corals (CWC) rely on available carbonate in the water column and the ability of the organism to sequester ions from seawater or nutrients for the formation and growth of a skeletal structure. As an important habitat structuring species, it is essential to examine the impact that anthropogenic stressors (i.e., OA and rising seawater temperatures) have on living corals and the structural properties of dead coral skeletons; these are important contributors to the entire reef structure and the stability of CWC mounds. In this study, dead coral skeletons in seawater were exposed to various levels of pCO2 and different temperatures over a 12-month period. Nanoindentation was subsequently conducted to assess the structural properties of coral samples’ elasticity (E) and hardness (H), whereas the amount of dissolution was assessed through scanning electron microscopy. Overall, CWC samples exposed to elevated pCO2 and temperature show changes in properties which leave them more susceptible to breakage and may in turn negatively impact the formation and stability of CWC mound development.

Description: The total mass flux (TMF) of particulate organic matter (POM) is key for understanding the energetic transfer within the “biological pump” (i.e., involving the carbon cycle), reflecting a critical connection between the surface and the bottom. A fixed multi-sediment trap was installed at 30 m depth in Callao Bay, central Peru from March to December 2020. After recovery, samples were dried and weighed to calculate the TMF and pellet flux. The average TMF was 601.9 mg·m−2·day−1, with 70.2 and 860 mg·m−2·day−1 as the lowest and highest values during “normal conditions”. Zooplankton fecal pellets (ZFP) were found in ovoid (e.g., larvae) and cylindrical (e.g., adult copepods) shapes and their flux contribution to TMF was low, ranging from 0.17 to 85.59 mg·m−2·day−1. In contrast with ZFP, fish fecal pellets (FFP) were found in fragments with a cylindrical shape, and their contribution to the TMF was higher than ZFP, ranging from 1 to 92.56 mg·m−2·day−1. Mean sinking velocities were 4.63 ± 3.47 m·day−1 (ZFP) and 432.27 ± 294.26 m·day−1 (FFP). There is a considerable difference between the ZFP and FFP contributions to TMFs. We discuss the implications of these results regarding a still poorly understood process controlling the POM flux off the Peruvian coast.

Description: The presence of active hydrothermal vent fields near residential areas and their possible link to volcanic activity poses a potential hazard to the environment, society, and the economy. By capitalizing on Autonomous Underwater Vehicle sampling methodologies and applying the Generalized Moments Method model for geological and physical processes in these environments, we shed light on the underlying dynamics shaping the physicochemical characteristics of the vents. In this study, we focus on the Northern Caldera of Santorini and, more specifically, on the recorded CTD data (Conductivity, Temperature, Depth). The data sets were collected in 2017 in Santorini using an Autonomous Underwater Vehicle during the GEOMAR POS510 mission. Our research shows that the active vent field within the caldera probably follows a multifractal behavior and exhibits a weak memory effect. Depth Profiles and Time Series show similar behavior among conductivity and temperature. The variance and moments of both parameters underline the existence of two different mechanisms governing the behavior of the vent field. Finally, the structure function shows that changes in the time series are described by a Cauchy–Lorentz distribution.

Description: Shallow, semi-enclosed coastal systems are particularly prone to eutrophication. Depending on local site conditions and historical nutrient legacies, sea-based measures might be necessary in addition to land-based nutrient removal. In this study, C:N:P ratios were combined with open-source bathymetric information and linked with the prevailing geomorphological and sedimentological regimes to gain insights into nutrient hotspots and understand their sources and fate in coastal waters. Land-based sediment samples were taken behind outlets at three sites in Eckernförde Bay (Baltic Sea), and complemented with ship-based sampling at locations approximately 8 m and 12 m water depth. The total carbon, nitrogen and phosphorus concentrations in surface sediments increased at deeper sites. This suggests that an increased downslope particle transport and deposition regime, based on local geomorphology, might influence nutrient hotspots to a larger extent than proximity to sources (e.g., outlets). Overall, the recorded C:N ratios (mean = 28.12) were closer to the ratio of terrestrial plants than those of marine phytoplankton, indicating allochthonous sources of organic matter.

Description: In large areas of the Clarion Clipperton Fracture Zone (northeast Pacific), exploration of deep-sea polymetallic nodules as a potential source of high-technology metals is ongoing. Deep-sea mining may have a severe impact on the benthic communities. Here, we investigated meiofauna communities in the abyss at the scale of a prospective mining operation area. Random forest regressions were computed to spatially predict continuous layers of environmental variables as well as the distribution of meiofauna abundance across the area. Significant models could be computed for 26 sediment and polymetallic nodule parameters. Meiofauna abundance, taxon richness and diversity were also modelled, as well as abundance of the taxon Nematoda. Spatial correlation is high if the predictions of meiofauna are either based on bathymetry and backscatter or include sediment and nodule variables; Pearson’s correlation coefficient varies between 0.42 and 0.91. Comparison of differences in meiofauna abundance between different years shows that spatial patterns do change, with an elevated abundance of meiofauna in the eastern part of the study area in 2013. On the spatial scale of a potential mining operation, distribution models prove to be a useful tool to gain insight into both temporal variability and the influence of potential environmental drivers on meiofauna distribution.

Description: The exchange of CH4 by CO2 in gas hydrates is of interest for the production of natural gas from methane hydrate with net zero climate gas balance, and for managing risks that are related to sediment destabilization and mobilization after gas-hydrate dissociation. Several experimental studies on the dynamics and efficiency of the process exist, but the results seem to be partly inconsistent. We used confocal Raman spectroscopy to map an area of several tens to hundreds µm of a CH4 hydrate sample during its exposure to liquid and gaseous CO2. On this scale, we could identify and follow different processes in the sample that occur in parallel. Next to guest-molecule exchange, gas-hydrate dissociation also contributes to the release of CH4. During our examination period, about 50% of the CO2 was bound by exchange for CH4 molecules, while the other half was bound by new formation of CO2 hydrates. We evaluated single gas-hydrate grains with confirmed gas exchange and applied a diffusion equation to quantify the process. Obtained diffusion coefficients are in the range of 10−13–10−18 m2/s. We propose to use this analytical diffusion equation for a simple and robust modeling of CH4 production by guest-molecule exchange and to combine it with an additional term for gas-hydrate dissociation.

Description: Mechanisms related to the induction of phlorotannin biosynthesis in marine brown algae remain poorly known. Several studies undertaken on fucoid species have shown that phlorotannins accumulate in the algae for several days or weeks after being exposed to grazing, and this is measured by direct quantification of soluble phenolic compounds. In order to investigate earlier inducible responses involved in phlorotannin metabolism, Fucus vesiculosus was studied between 6 and 72 h of grazing by the sea snail Littorina littorea. In this study, the quantification of soluble phenolic compounds was complemented by a Quantitative real-time PCR (qRT-PCR) approach applied on genes that are potentially involved in either the phlorotannin metabolism or stress responses. Soluble phlorotannin levels remained stable during the kinetics and increased significantly only after 12 h in the presence of grazers, compared to the control, before decreasing to the initial steady state for the rest of the kinetics. Under grazing conditions, the expression of vbpo, cyp450 and ast6 genes was upregulated, respectively, at 6 h, 12 h and 24 h, and cyp450 gene was downregulated after 72 h. Interestingly, the pksIII gene involved in the synthesis of phloroglucinol was overexpressed under grazing conditions after 24 h and 72 h. This study supports the hypothesis that phlorotannins are able to provide an inducible chemical defense under grazing activity, which is regulated at different stages of the stress response.

Description: Cobbles and boulders on the seafloor are of high ecological value in their function as habitats for a variety of benthic species, contributing to biodiversity and productivity in marine environments. We investigate the origin, physical shape, and structure of habitat-forming cobbles and boulders and reflect on their dynamics in coastal environments of the southwestern Baltic Sea. Stone habitats are not limited to lag deposits and cannot be sufficiently described as static environments, as different dynamic processes lead to changes within the physical habitat structure and create new habitats in spatially disparate areas. Dynamic processes such as (a) ongoing exposure of cobbles and boulders from glacial till, (b) continuous overturning of cobbles, and (c) the migration of cobbles need to be considered. A distinction between allochthonous and autochthonous habitats is suggested. The genesis of sediment types indicates that stone habitats are restricted to their source (glacial till), but hydrodynamic processes induce a redistribution of individual cobbles, leading to the development of new coastal habitats. Thus, coastal stone habitats need to be regarded as dynamic and are changing on a large bandwidth of timescales. In general, wave-induced processes changing the physical structure of these habitats do not occur separately but rather act simultaneously, leading to a dynamic type of habitat.

Description: Seafloor heat flow measurements are utilized to determine the geothermal regime of the Danube deep-sea fan in the western Black Sea and are presented in the larger context of regional gas hydrate occurrences. Heat flow data were collected across paleo-channels in water depths of 550–1460 m. Heat flow across levees ranges from 25 to 30 mW m−2 but is up to 65 mW m−2 on channel floors. Gravity coring reveals sediment layers typical of the western Black Sea, consisting of three late Pleistocene to Holocene units, notably red clay within the lowermost unit cored. Heat flow derived from the bottom-simulating reflector (BSR), assumed to represent the base of the gas hydrate stability zone (GHSZ), deviates from seafloor measurements. These discrepancies are linked either to fast sedimentation or slumping and associated variations in sediment physical properties. Topographic effects account of up to 50% of heat flow deviations from average values. Combined with climate-induced variations in seafloor temperature and sea-level since the last glacial maximum large uncertainties in the prediction of the base of the GHSZ remain. A regional representative heat flow value is ~30 mW m−2 for the study region but deviations from this value may be up to 100%.

Description: Osmotic adaptation and accumulation of compatible solutes is a key process for life at high osmotic pressure and elevated salt concentrations. Most important solutes that can protect cell structures and metabolic processes at high salt concentrations are glycine betaine and ectoine. The genome analysis of more than 130 phototrophic bacteria shows that biosynthesis of glycine betaine is common among marine and halophilic phototrophic Proteobacteria and their chemotrophic relatives, as well as in representatives of Pirellulaceae and Actinobacteria, but are also found in halophilic Cyanobacteria and Chloroherpeton thalassium. This ability correlates well with the successful toleration of extreme salt concentrations. Freshwater bacteria in general lack the possibilities to synthesize and often also to take up these compounds. The biosynthesis of ectoine is found in the phylogenetic lines of phototrophic Alpha- and Gammaproteobacteria, most prominent in the Halorhodospira species and a number of Rhodobacteraceae. It is also common among Streptomycetes and Bacilli. The phylogeny of glycine-sarcosine methyltransferase (GMT) and diaminobutyrate-pyruvate aminotransferase (EctB) sequences correlate well with otherwise established phylogenetic groups. Most significantly, GMT sequences of cyanobacteria form two major phylogenetic branches and the branch of Halorhodospira species is distinct from all other Ectothiorhodospiraceae. A variety of transport systems for osmolytes are present in the studied bacteria

Description: Marine sponges are exceptionally prolific sources of natural products for the discovery and development of new drugs. Until now, sponges have contributed around 30% of all natural metabolites isolated from the marine environment. Family Latrunculiidae Topsent, 1922 (class Demospongiae Sollas, 1885, order Poecilosclerida Topsent, 1928) is a small sponge family comprising seven genera. Latrunculid sponges are recognized as the major reservoirs of diverse types of pyrroloiminoquinone-type alkaloids, with a myriad of biological activities, in particular, cytotoxicity, fuelling their exploration for anticancer drug discovery. Almost 100 pyrroloiminoquinone alkaloids and their structurally related compounds have been reported from the family Latrunculiidae. The systematics of latrunculid sponges has had a complex history, however it is now well understood. The pyrroloiminoquinone alkaloids have provided important chemotaxonomic characters for this sponge family. Latrunculid sponges have been reported to contain other types of metabolites, such as peptides (callipeltins), norditerpenes and norsesterpenes (trunculins) and macrolides (latrunculins), however, the sponges containing latrunculins and trunculins have been transferred to other sponge families. This review highlights a comprehensive literature survey spanning from the first chemical investigation of a New Zealand Latrunculia sp. in 1986 until August 2020, focusing on the chemical diversity and biological activities of secondary metabolites reported from the family Latrunculiidae. The biosynthetic (microbial) origin and the taxonomic significance of pyrroloiminoquinone related alkaloids are also discussed.

Description: Brown alga Bifurcaria bifurcata is an extraordinarily rich source of linear (acylic) diterpenes with enormous structural diversity. As part of our interest into secondary metabolites of the Irish seaweeds, here we report four new acyclic diterpenes (1–4) and seven known terpenoids (5–11) from the CHCl3 extract B. bifurcata. The planar structures of the new metabolites were elucidated by means of 1D and 2D NMR, HRMS, and FT-IR spectroscopy. Since linear diterpenes are highly flexible compounds, the assignment of their stereochemistry by conventional methods, e.g., NOESY NMR, is difficult. Therefore, we employed extensive quantum-mechanical prediction of NMR chemical shifts and optical rotation analyses to identify the relative and absolute configurations of the new compounds 1–4. Several compounds moderately inhibited the human breast cancer cell line (MDA-MB-231) with IC50 values ranging from 10.0 to 33.5 μg/mL. This study not only demonstrates the vast capacity of the Irish B. bifurcata to produce highly oxygenated linear diterpenoids, but also highlights the potential of new methodologies for assignment of their stereogenic centers

Description: Biodegradable and compostable plastics are getting more attention as the environmental impacts of fossil-fuel-based plastics are revealed. Microbes can consume these plastics and biodegrade them within weeks to months under the proper conditions. The biobased polyhydroxyalkanoate (PHA) polymer family is an attractive alternative due to its physicochemical properties and biodegradability in soil, aquatic, and composting environments. Standard test methods are available for biodegradation that employ either natural inocula or defined communities, the latter being preferred for standardization and comparability. The original marine biodegradation standard test method ASTM D6691 employed such a defined consortium for testing PHA biodegradation. However, the taxonomic composition and metabolic potential of this consortium have never been confirmed using DNA sequencing technologies. To this end, we revived available members of this consortium and determined their phylogenetic placement, genomic sequence content, and metabolic potential. The revived members belonged to the Bacillaceae, Rhodobacteraceae, and Vibrionaceae families. Using a comparative genomics approach, we found all the necessary enzymes for both PHA production and utilization in most of the members. In a clearing-zone assay, three isolates also showed extracellular depolymerase activity. However, we did not find classical PHA depolymerases, but identified two potentially new extracellular depolymerases that resemble triacylglycerol lipases.

Description: Global change has led to manifold changes of marine ecosystems and biodiversity world-wide. While it has been shown that certain jellyfish and comb jelly species have increased regionally, it remains to be investigated if this is a general trend or localized phenomenon. Especially for the economically important Baltic Sea, which is characterized by an extreme physical environmental gradient, this question has not been addressed to date. Here we present a detailed account of the gelatinous macro-zooplankton community including their physiological tolerance towards abiotic conditions and resulting distribution ranges in the Baltic. We show that the arrival and establishment of non-indigenous species has led to a rising importance of jellyfish and comb jellies in the Baltic. This accounts for the comb jelly Mnemiopsis leidyi, which was first observed in Northern Europe in 2005, as well as for the hydromedusae Blackfordia virginica, first sighted in 2014. Both species have been shown to attain high population densities with pronounced grazing impact in other invasive regions. Given the current and anticipated changes of the physical environment of the Baltic Sea, especially ongoing warming, amplification of their impact can be expected.

Description: In 2014/2015 a one-year field campaign at the Tiksi observatory in the Laptev Sea area was carried out using Sound Detection and Ranging/Radio Acoustic Sounding System (SODAR/RASS) measurements to investigate the atmospheric boundary layer (ABL) with a focus on low-level jets (LLJ) during the winter season. In addition to SODAR/RASS-derived vertical profiles of temperature, wind speed and direction, a suite of complementary measurements at the Tiksi observatory was available. Data of a regional atmospheric model were used to put the local data into the synoptic context. Two case studies of LLJ events are presented. The statistics of LLJs for six months show that in about 23% of all profiles LLJs were present with a mean jet speed and height of about 7 m/s and 240 m, respectively. In 3.4% of all profiles LLJs exceeding 10 m/s occurred. The main driving mechanism for LLJs seems to be the baroclinicity, since no inertial oscillations were found. LLJs with heights below 200 m are likely influenced by local topography.

Description: Intraspecific diversity is a substantial part of biodiversity, yet little is known about its maintenance. Understanding mechanisms of intraspecific diversity shifts provides realistic detail about how phytoplankton communities evolve to new environmental conditions, a process especially important in times of climate change. Here, we aimed to identify factors that maintain genotype diversity and link the observed diversity change to measured phytoplankton morpho-functional traits Vmax and cell size of the species and genotypes. In an experimental setup, the two phytoplankton species Emiliania huxleyi and Chaetoceros affinis, each consisting of nine genotypes, were cultivated separately and together under different fluctuation and nutrient regimes. Their genotype composition was assessed after 49 and 91 days, and Shannon’s diversity index was calculated on the genotype level. We found that a higher intraspecific diversity can be maintained in the presence of a competitor, provided it has a substantial proportion to total biovolume. Both fluctuation and nutrient regime showed species-specific effects and especially structured genotype sorting of C. affinis. While we could relate species sorting with the measured traits, genotype diversity shifts could only be partly explained. The observed context dependency of genotype maintenance suggests that the evolutionary potential could be better understood, if studied in more natural settings including fluctuations and competition.

Description: Jellyfish outbreaks are conspicuous natural events in marine ecosystems that have a substantial impact on the structure and dynamics of marine ecosystems and different economic sectors of human activities. Understanding the life cycle strategies of jellyfish species is therefore critical to mitigate the impacts these organisms may have. In this context, the present study investigated the effect of different temperature and salinity regimes on the rearing success of the jellyfish Aurelia solida in microcosm experiments on two different life stages: polyps and ephyrae. Polyps showed high survival rates across the different conditions (except at 28◦C/20 psu) and reproduced asexually in all combinations, with the highest budding activity at 20◦C and 30 psu. Strobilation occurred mainly at 16◦C and 35 psu. Although ephyra survival was highest at low salinities (20 psu) and lower temperatures (10 and 15◦C), the highest growth rates were reached at intermediate temperatures (20◦C). The comparison to other Aurelia species underlines the differences between even closely related species. Given the high tolerance capacity that A. solida presented in the experiments, the species has the potential to cope well under current climate change scenarios and possibly adapt successfully to other regions and ecosystems.

Description: This paper aims to identify and discuss the chances, solutions, and possible drawbacks related to the establishment of safe geotourism sites in subsidence-affected areas, exemplarily applied to the Ghor Al-Haditha sinkhole site at the southeastern shore of the Dead Sea. Such safe areas shall be established in the territory of the proposed future UNESCO Global Geopark (UGGp) in Jordan. The highlights of the geopark and the basis of its creation are the subsidence features and stream channels found along the SE shoreline of the Dead Sea, which form both a natural hazard and geological heritage of high international significance and have attracted many researchers so far. This recent and ongoing formation is related to the sharp regression of the lake, the specific geomechanical conditions, and the hydrogeologic and climatic background of the surroundings. Nearby communities have suffered in economic terms from these natural phenomena, including flash floods and droughts in this semi-arid to arid region. We here present a concept on how to integrate geoscientific research for hazard monitoring and early warning to maintain safety for inhabitants and visitors on the one hand and reach sustainable economic development through the establishment of geotourism sites on the other hand. This highlight area of the proposed UGGp serves as a starting example for delineating safe zones for walkways and infrastructure. This involves two-way knowledge transfer between spatial planning and hydrogeophysical monitoring, a network of community-supported geophysical surveillance, and regular maintenance and adaptation. The cross-cutting benefits for the territory involve the delineation of safe areas for agriculture and geotourism, the increase of sustainable tourism in the region with a shift towards alternative ways of income, more investment in infrastructure, a growth of international visibility of the region, enhanced environmental education with focus on responsible water usage, and involvement in international research and education projects.

Description: The Koudiat Aïcha Zn-Cu-Pb deposit (3–Mt ore @ 3 wt.% Zn, 1 wt.% Pb, 0.6 wt.% Cu) in the Jebilet massif (Morocco) comprises stratabound lenticular orebodies and crosscutting sulfide-bearing quartz ± carbonate veins in the lower Carboniferous Sarhlef volcano sedimentary succession. The veins are characterized by abundant pyrrhotite, sphalerite, subordinate chalcopyrite and galena and rare Ag and Au minerals. The stratabound massive sulfide ores are attributed to a “VMS” type, whereas the origin of the sulfide–quartz ± carbonate veins remains poorly understood. New mineralogical and microanalytical data (SEM, EPMA and LA-ICP-MS) combined with fluid inclusion results point to two-stage vein formation. The early stage involved C–H–O–N Variscan metamorphic fluids which percolated through fractures and shear zones and deposited pyrite at 〉400 °C, followed by the formation of pyrrhotite and sphalerite (300 ± 20 °C) in quartz veins and in banded and breccia ores. The pyrrhotite–sphalerite mineralization was overprinted by aqueous brines (34 to 38 wt% eq. NaCl + CaCl2) that precipitated carbonate and Cu-Pb sulfides (±Ag-Au) at ~180–210 °C through mixing with low-salinity fluids during tectonic reworking of early-formed structures and in late extension fractures. The latter ore fluids were similar to widspread post-Variscan evaporitic brines that circulated in the Central Jebilet. Overlapping or successive pulses of different ore fluids, i.e., metamorphic fluids and basinal brines, led to metal enrichment in the quartz–carbonate veins compared to the massive sulfide ores. These results underscore that even a single deposit may record several distinct mineralizing styles, such that the ultimate metal endowment may be cumulative over multiple stages.

Description: The genome sequences for Rhodocyclus purpureus DSM 168T and four strains assigned to Rhodocyclus tenuis (DSM 110, DSM 111, DSM 112, and IM 230) have been determined. One of the strains studied (IM 230) has an average nucleotide identity (ANI) of 97% to the recently reported genome of the type strain DSM 109 of Rcy. tenuis and is regarded as virtually identical at the species level. The ANI of 80% for three other strains (DSM 110, DSM 111, DSM 112) to the type strain of Rcy. tenuis points to a differentiation of these at the species level. Rcy. purpureus is equidistant from Rcy. tenuis and the new species, based on both ANI (78–80%) and complete proteome comparisons (70% AAI). Strains DSM 110, DSM 111, and DSM 112 are very closely related to each other based on ANI, whole genome, and proteome comparisons but clearly distinct from the Rcy. tenuis type strain DSM 109. In addition to the whole genome differentiation, these three strains also contain unique genetic differences in cytochrome genes and contain genes for an anaerobic cobalamin synthesis pathway that is lacking from both Rcy. tenuis and Rcy. purpureus. Based on genomic and genetic differences, these three strains should be considered to represent a new species, which is distinctly different from both Rcy. purpureus and Rcy. tenuis, for which the new name Rhodocyclus gracilis sp. nov. is proposed.

Description: Vouacapoua americana (Fabaceae) is an economically important tree in the Amazon region and used for its highly resistant heartwood as well as for medicinal purposes. Despite its frequent use, phytochemical investigations have been limited and rather focused on ecological properties than on its pharmacological potential. In this study, we investigated the phytochemistry and bioactivity of V. americana stem bark extract and its constituents to identify eventual lead structures for further drug development. Applying hydrodistillation and subsequent GC-MS analysis, we investigated the composition of the essential oil and identified the 15 most abundant components. Moreover, the diterpenoids deacetylchagresnone (1), cassa-13(14),15-dien-oic acid (2), isoneocaesalpin H (3), (+)-vouacapenic acid (4), and (+)-methyl vouacapenate (5) were isolated from the stem bark, with compounds 2 and 4 showing pronounced effects on Methicillin-resistant Staphylococcus aureus and Enterococcus faecium, respectively. During the structure elucidation of deacetylchagresnone (1), which was isolated from a natural source for the first time, we detected inconsistencies regarding the configuration of the cyclopropane ring. Thus, the structure was revised for both deacetylchagresnone (1) and the previously isolated chagresnone. Following our works on Copaifera reticulata and Vatairea guianensis, the results of this study further contribute to the knowledge of Amazonian medicinal plants.

Description: The utilization of stationary underwater cameras is a modern and well-adapted approach to provide a continuous and cost-effective long-term solution to monitor underwater habitats of particular interest. A common goal of such monitoring systems is to gain better insight into the dynamics and condition of populations of various marine organisms, such as migratory or commercially relevant fish taxa. This paper describes a complete processing pipeline to automatically determine the abundance, type and estimate the size of biological taxa from stereoscopic video data captured by the stereo camera of a stationary Underwater Fish Observatory (UFO). A calibration of the recording system was carried out in situ and, afterward, validated using the synchronously recorded sonar data. The video data were recorded continuously for nearly one year in the Kiel Fjord, an inlet of the Baltic Sea in northern Germany. It shows underwater organisms in their natural behavior, as passive low-light cameras were used instead of active lighting to dampen attraction effects and allow for the least invasive recording possible. The recorded raw data are pre-filtered by an adaptive background estimation to extract sequences with activity, which are then processed by a deep detection network, i.e., Yolov5. This provides the location and type of organisms detected in each video frame of both cameras, which are used to calculate stereo correspondences following a basic matching scheme. In a subsequent step, the size and distance of the depicted organisms are approximated using the corner coordinates of the matched bounding boxes. The Yolov5 model employed in this study was trained on a novel dataset comprising 73,144 images and 92,899 bounding box annotations for 10 categories of marine animals. The model achieved a mean detection accuracy of 92.4%, a mean average precision (mAP) of 94.8% and an F1 score of 93%.

Description: Petrography of recrystallised ikaite from Ocean Drilling Program material has been presented previously from Nankai Trough and Congo (ex-Zaire) deep-sea fan. This paper expands on the Nankai Trough ikaite observations, drawing on evidence from Laptev Sea, South Georgia, Okhotsk Sea, and coastal lagoon Point Barrow. However, even though many ikaite and glendonite sites occur at high latitudes, it cannot be that ikaite forms exclusively in polar environments, as demonstrated by the occurrences in the low latitude low temperature deep sea sediments offshore Gulf of Guinea (Angola Congo) and mid-latitude deep-sea trenches offshore Japan. Recrystallised ikaite occurs as mm large, zoned calcite crystals in all samples, along with secondary phases of calcite. Our data set is unique in that the origin, storage, and recrystallisation process of natural formed ikaite is recorded in detail and confirms that glendonite petrographic characteristics are a consequence of the structure and chemistry of recrystallising ikaite and not the physical or geochemical environment. The transformation of man-made ikaite to calcite as recorded in laboratory studies, is a process very similar to the one we have observed for natural ikaite. Most significant is that there is variation in the order of the calcite types within a single sample, leading to the conclusion that the variation is a consequence of impurities and geochemical variability in the ikaite, not the external environment. Morphological observations reveal similarities in ikaite and glendonite, this and the similarity in internal textures in glendonite and recrystallised ikaite confirms that glendonite may be used as an indicator of past presence of ikaite.

Description: The golden cuttlefish Sepia esculenta is the one of most abundant cuttlefish species around south-east Asia and has a high commercial value. Despite its wide distribution and high commercial value, its reproductive biology is still poorly understood. This study was based on 25 males and 6 females. The potential fecundity (PF) of females was 1701–3719 oocytes, which was an increase, as compared to the previously known values. The oocyte resorption reached up to 13.2% of fecundity. The ovulation pattern was group-synchronous, with a predominance of previtellogenic oocytes. The pre-meiotic and primary growth oocyte phases were absent in mature females. The number of spermatophores carried by an individual male was 146–1698 (length 9–20 mm). The spermatophores were characterised by a cement body consisting of conical oral and cylindrical aboral parts. The ontogenetic changes in the spermatophores and their parts were recorded for the first time in the order of Sepiida. Their sperm content and their adhesive abilities also increased during ontogenesis. The data obtained in the present study significantly increased and corrected the existing knowledge of S. esculenta biology. Moreover, these data help to explain the general patterns of reproductive biology in cuttlefish, as well as in Cephalopoda as a whole.

Description: With more than 156,000 described species, eukaryotic algae (both macro- and micro-algae) are a rich source of biological diversity, however their chemical diversity remains largely unexplored. Specialised metabolites with promising biological activities have been widely reported for seaweeds, and more recently extracts from microalgae have exhibited activity in anticancer, antimicrobial, and antioxidant screens. However, we are still missing critical information on the distinction of chemical profiles between macro- and microalgae, as well as the chemical space these metabolites cover. This study has used an untargeted comparative metabolomics approach to explore the chemical diversity of seven seaweeds and 36 microalgal strains. A total of 1390 liquid chromatography-mass spectrometry (LC-MS) features were detected, representing small organic algal metabolites, with no overlap between the seaweeds and microalgae. An in-depth analysis of four Dunaliella tertiolecta strains shows that environmental factors may play a larger role than phylogeny when classifying their metabolomic profiles

Description: Red yeasts of the genus Rhodotorula are of great interest to the biotechnological industry due to their ability to produce valuable natural products, such as lipids and carotenoids with potential applications as surfactants, food additives, and pharmaceuticals. Herein, we explored the biosynthetic potential of R. mucilaginosa 50-3-19/20B collected from the Mid-Atlantic Ridge using modern genomics and untargeted metabolomics tools. R. mucilaginosa 50-3-19/20B exhibited anticancer activity when grown on PDA medium, while antimicrobial activity was observed when cultured on WSP-30 medium. Applying the bioactive molecular networking approach, the anticancer activity was linked to glycolipids, namely polyol esters of fatty acid (PEFA) derivatives. We purified four PEFAs (1–4) and the known methyl-2-hydroxy-3-(1H-indol-2-yl)propanoate (5). Their structures were deduced from NMR and HR-MS/MS spectra, but 1–5 showed no anticancer activity in their pure form. Illumina-based genome sequencing, de novo assembly and standard biosynthetic gene cluster (BGC) analyses were used to illustrate key components of the PEFA biosynthetic pathway. The fatty acid producing BGC3 was identified to be capable of producing precursors of PEFAs. Some Rhodotorula strains are able to convert inulin into high-yielding PEFA and cell lipid using a native exo-inulinase enzyme. The genomic locus for an exo-inulinase enzyme (g1629.t1), which plays an instrumental role in the PEFA production via the mannitol biosynthesis pathway was identified. This is the first untargeted metabolomics study on R. mucilaginosa providing new genomic insights into PEFA biosynthesis.

Description: The Estremadura Spur pockmarks are a unique and unexplored ecosystem located in the North Atlantic, off the coast of Portugal. A total of 85 marine-derived actinomycetes were isolated and cultured from sediments collected from this ecosystem at a depth of 200 to 350 m. Nine genera, Streptomyces, Micromonospora, Saccharopolyspora, Actinomadura, Actinopolymorpha, Nocardiopsis, Saccharomonospora, Stackebrandtia, and Verrucosispora were identified by 16S rRNA gene sequencing analyses, from which the first two were the most predominant. Non-targeted LC-MS/MS, in combination with molecular networking, revealed high metabolite diversity, including several known metabolites, such as surugamide, antimycin, etamycin, physostigmine, desferrioxamine, ikarugamycin, piericidine, and rakicidin derivatives, as well as numerous unidentified metabolites. Taxonomy was the strongest parameter influencing the metabolite production, highlighting the different biosynthetic potentials of phylogenetically related actinomycetes; the majority of the chemical classes can be used as chemotaxonomic markers, as the metabolite distribution was mostly genera-specific. The EtOAc extracts of the actinomycete isolates demonstrated antimicrobial and antioxidant activity. Altogether, this study demonstrates that the Estremadura Spur is a source of actinomycetes with potential applications for biotechnology. It highlights the importance of investigating actinomycetes from unique ecosystems, such as pockmarks, as the metabolite production reflects their adaptation to this habitat.

Description: In July and August 2019, two paroxysmal eruptions dramatically changed the morphology of the crater terrace that hosts the active vents of Stromboli volcano (Italy). Here, we document these morphological changes, by using 2259 UAS-derived photographs from eight surveys and Structure-from-Motion (SfM) photogrammetric techniques, resulting in 3D point clouds, orthomosaics, and digital surface models (DSMs) with resolution ranging from 8.1 to 12.4 cm/pixel. We focus on the morphological evolution of volcanic features and volume changes in the crater terrace and the upper part of the underlying slope (Sciara del Fuoco). We identify both crater terrace and lava field variations, with vents shifting up to 47 m and the accumulation of tephra deposits. The maximum elevation changes related to the two paroxysmal eruptions (in between May and September 2019) range from +41.4 to −26.4 m at the lava field and N crater area, respectively. Throughout September 2018–June 2020, the total volume change in the surveyed area was +447,335 m3. Despite Stromboli being one of the best-studied volcanoes worldwide, the UAS-based photogrammetry products of this study provide unprecedented high spatiotemporal resolution observations of its entire summit area, in a period when volcanic activity made the classic field inspections and helicopter overflights too risky. Routinely applied UAS operations represent an effective and evolving tool for volcanic hazard assessment and to support decision-makers involved in volcanic surveillance and civil protection operations.

Description: Marine nitrogen (N2 ) fixation was historically considered to be absent or reduced in nitrate (NO3− ) rich environments. This is commonly attributed to the lower energetic cost of NO3− uptake compared to diazotrophy in oxic environments. This paradigm often contributes to making inferences about diazotroph distribution and activity in the ocean, and is also often used in biogeochemical ocean models. To assess the general validity of this paradigm beyond the traditionally used model organism Trichodesmium spp., we grew cultures of the unicellular cyanobacterium Crocosphaera watsonii WH8501 long term in medium containing replete concentrations of NO3− . NO3− uptake was measured in comparison to N2 fixation to assess the cultures’ nitrogen source preferences. We further measured culture growth rate, cell stoichiometry, and carbon fixation rate to determine if the presence of NO3 − had any effect on cell metabolism. We found that uptake of NO3− by this strain of Crocosphaera was minimal in comparison to other N sources (~2–4% of total uptake). Furthermore, availability of NO3 − did not statistically alter N2 fixation rate nor any aspect of cell physiology or metabolism measured (cellular growth rate, cell stoichiometry, cell size, nitrogen fixation rate, nitrogenase activity) in comparison to a NO3− free control culture. These results demonstrate the capability of a marine diazotroph to fix nitrogen and grow independently of NO3− . This lack of sensitivity of diazotrophy to NO3− suggests that assumptions often made about, and model formulations of, N2 fixation should be reconsidered.

Description: Similar to other marine holobionts, fish are colonized by complex microbial communities that promote their health and growth. Fish-associated microbiota is emerging as a promising source of bioactive metabolites. Pleuronectes platessa (European plaice, plaice), a flatfish with commercial importance, is common in the Baltic Sea. Here we used a culture-dependent survey followed by molecular identification to identify microbiota associated with the gills and the gastrointestinal tract (GIT) of P. platessa, then profiled their antimicrobial activity and metabolome. Altogether, 66 strains (59 bacteria and 7 fungi) were isolated, with Proteobacteria being the most abundant phylum. Gill-associated microbiota accounted for higher number of isolates and were dominated by the Proteobacteria (family Moraxellaceae) and Actinobacteria (family Nocardiaceae), whereas Gram-negative bacterial families Vibrionaceae and Shewanellaceae represented the largest group associated with the GIT. The EtOAc extracts of the solid and liquid media cultures of 21 bacteria and 2 fungi representing the diversity of cultivable plaice-associated microbiota was profiled for their antimicrobial activity against three fish pathogens, human bacterial pathogen panel (ESKAPE) and two human fungal pathogens. More than half of all tested microorganisms, particularly those originating from the GIT epithelium, exhibited antagonistic effect against fish pathogens (Lactococcus garvieae, Vibrio ichthyoenteri) and/or human pathogens (Enterococcus faecium, methicillin-resistant Staphylococcus aureus). Proteobacteria represented the most active isolates. Notably, the solid media extracts displayed higher activity against fish pathogens, while liquid culture extracts were more active against human pathogens. Untargeted metabolomics approach using feature-based molecular networking showed the high chemical diversity of the liquid extracts that contained undescribed clusters. This study highlights plaice-associated microbiota as a potential source of antimicrobials for the control of human and the aquaculture-associated infections. This is the first study reporting diversity, bioactivity and chemical profile of culture-dependent microbiota of plaice.

Description: Along the Baltic coastline of Germany, drifting vegetation and beach cast create overlays at the otherwise sandy or stony beaches. These overlays influence the morphodynamics and structures of the beaches. To better understand the influence of these patchy habitats on coastal environments, regular monitoring is necessary. Most studies, however, have been conducted on spatially larger and temporally more stable occurrences of aquatic vegetation such as floating fields of Sargassum. Nevertheless, drifting vegetation and beach cast pose a particular challenge, as they exhibit high temporal dynamics and sometimes small spatial extent. Regular surveys and mappings are the traditional methods to record their habitats, but they are time-consuming and cost-intensive. Spaceborne remote sensing can provide frequent recordings of the coastal zone at lower cost. Our study therefore aims at the monitoring of drifting vegetation and beach cast on spatial scales between 3 and 10 m. We developed an automated coastline masking algorithm and tested six supervised classification methods and various classification ensembles for their suitability to detect small-scale assemblages of drifting vegetation and beach cast in a study area at the coastline of the Western Baltic Sea using multispectral data of the sensors Sentinel-2 MSI and PlanetScope. The shoreline masking algorithm shows high accuracies in masking the land area while preserving the sand-covered shoreline. We could achieve best classification results using PlanetScope data with an ensemble of a random forest classifier, cart classifier, support vector machine classifier, naïve bayes classifier and stochastic gradient boosting classifier. This ensemble accomplished a combined f1-score of 0.95. The accuracy of the Sentinel-2 classifications was lower but still achieved a combined f1-score of 0.86 for the same ensemble. The results of this study can be considered as a starting point for the development of time series analysis of the vegetation dynamics along Baltic beaches

Description: The Ectothiorhodospiraceae family represents purple sulfur bacteria of the Gammaproteobacteria found primarily in alkaline soda lakes of moderate to extremely high salinity. The main microscopi-cally visible characteristic separating them from the Chromatiaceae is the excretion of the intermediate elemental sulfur formed during oxidation of sulfide prior to complete oxidation to sulfate rather than storing it in the periplasm. We present a comparative study of 38 genomes of all species of phototrophic Ectothiorhodospiraceae. We also include a comparison with those chemotrophic bacteria that have been assigned to the family previously and critically reevaluate this assignment. The data demonstrate the separation of Halorhodospira species in a major phylogenetic branch distant from other Ectothiorhodospiraceae and support their separation into a new family, for which the name Halorho-dospiraceae fam. nov. is proposed. In addition, the green-colored, bacteriochlorophyll-containing species Halorhodospira halochloris and Halorhodospira abdelmalekii were transferred to the new genus Halochlorospira gen. nov. of this family. The data also enable classification of several so far unclassified isolates and support the separation of Ectothiorhodospira shaposhnikovii and Ect. vacuolata as well as Ect. mobilis and Ect. marismortui as distinct species.

Description: Renewable energy installations and energy storage solutions require significant quantities of critical raw materials such as nickel, cobalt and rare earth metals. The supply chains of these raw materials face many difficulties, such as the continuous decrease of mineral ore grades on land. In view of these complications, the motivation to search for new resources has grown, with the deep sea being seen as a potential source of these minerals. Polymetallic nodule mining generates turbidity currents, which could negatively impact the deep-sea environment. For that reason, we investigate this type of current experimentally and numerically in order to characterize the generated turbidity current. Various non-cohesive sediment types, i.e., different particle sizes, and different concentrations are tested using a lock-exchange set-up. Three sediment types (glass beads, silica sand and a 50/50 blend of glass beads and silica sand) with seven initial sediment concentrations are examined. Additionally, for the numerical work, a drift–flux modelling approach is used to simulate the performed lock-exchange experiments. The results show that the front velocities of the currents resulting from the three sediment types increases with increasing initial concentrations inside the lock regardless. Moreover, using the same initial concentration, the difference in front velocities between the generated currents of the three sediment types decreases as the initial concentration increases. When using an initial volumetric concentration of 2.5% and 3%, the difference in front velocities between the generated current of the three sediment types vanishes. Finally, by comparing the numerical and experimental results, the drift–flux model is proven to be a reliable numerical model for predicting the current.

Description: The use of pesticides in agricultural systems may have deleterious effects on surrounding environments. Aquatic systems are no exception and are increasingly polluted through the leaching of pesticides from agricultural activities. However, the pesticide pollution effects on key aquatic species have not been studied in many regions. In southern Africa, increasing pesticide use associated with macadamia tree Macadamia integrifolia farming presents a growing risk to surrounding aquatic ecosystems. This study assessed behavioural responses of an important and widely-distributed freshwater fish, Mozambique tilapia Oreochromis mossambicus, following exposure to three commonly used macadamia pesticides (i.e., Karate Zeon 10 CS, Mulan 20 SP, Pyrinex 250 CS) at different concentrations (0.7–200 µL, 0.3–1000 mg, and 0.7–8750 µL, respectively) over 24 h. Behavioural responses, i.e., swimming erratically, surfacing, vertical positioning, loss of equilibrium, being motionless and mortality were observed after pesticides exposure. Lethal dose 50 (LD50) values of Karate Zeon 10 CS, Mulan 20 SP and Pyrinex 250 CS were 2.1 µL (per water litre dilution—WLD), 5.2 mg (WLD) and 21.5 µL (WLD), respectively. These concentrations are therefore expressed as a maximal threshold usage in the environment around macadamia farms and a minimum distance of the plantations to water systems should be considered. Further studies should examine effects on other fish species and aquatic invertebrates to inform on pesticide pollution threats and mitigation plans for the region.