ALBERT

Description: Archaeological exavations,undertaken since 2004 for the construction of the new Naples subway

Description: Published

Description: 542-557

Description: 1V. Storia eruttiva

Description: JCR Journal

Description: Here we present the results of the inversion of a new geodetic data set covering the 2012 Emilia seismic sequence and the following 1 year of postseismic deformation. Modeling of the geodetic data together with the use of a catalog of 3-D relocated aftershocks allows us to constrain the rupture geometries and the coseismic and postseismic slip distributions for the two main events (Mw 6.1 and 6.0) of the sequence and to explore how these thrust events have interacted with each other. Dislocation modeling reveals that the first event ruptured a slip patch located in the center of the Middle Ferrara thrust with up to 1 m of reverse slip. The modeling of the second event, located about 15 km to the southwest, indicates a main patch with up to 60 cm of slip initiated in the deeper and flatter portion of the Mirandola thrust and progressively propagated postseismically toward the top section of the rupture plane, where most of the aftershocks and afterslip occurred. Our results also indicate that between the two main events, a third thrust segment was activated releasing a pulse of aseismic slip equivalent to a Mw 5.8 event. Coulomb stress changes suggest that the aseismic event was likely triggered by the preceding main shock and that the aseismic slip event probably brought the second fault closer to failure. Our findings show significant correlations between static stress changes and seismicity and suggest that stress interaction between earthquakes plays a significant role among continental en echelon thrusts.

Description: Published

Description: 4742–4766

Description: 1T. Deformazione crostale attiva

Description: 2T. Sorgente Sismica

Description: 3T. Storia Sismica

Description: JCR Journal

Description: The snow cover on Antarctic sea ice persists during most of the year, contributing significantly to the sea ice mass budget due to comprehensive seasonal transition processes within the snowpack as well as at the snow/ice interface. Consequently, snow on sea ice varies not only in depth but also in particular in its physical characteristics such as snow density and stratigraphy. In order to quantify the heterogeneous nature of the Antarctic snowpack on different spatial scales, that is, small (〈10 m), floe‐size (1‐2 km), and regional (seasonal/perennial ice) scales, we present here a case study of snow analyses in the Weddell Sea in austral winter 2013. The resulting high variability of snow parameters in the basal snow layer reveals the need to distinguish between seasonal and perennial ice regimes, when retrieving, for example, snow depth using satellite microwave radiometry. Considering the full vertical snow column, a more detailed distinction of the perennial sea ice regime into, for example, more ice classes is suggested in order to represent the high variability range. For the internal snowpack variability, however, we identify the grain size variability as the main driver, while snow density variations can be neglected. Moving from regional to floe‐size scales, a similar variability range of the studied snow properties is found, suggesting that a large number of snow samples on a few floes is more crucial than covering a large region with fewer floe‐scale measurements. The spatiotemporally heterogeneous variability in snow accumulation, redistribution, and metamorphism is, however, too large to upscale the given findings beyond regional scale.

Description: This paper investigates new observations from the poorly understood region between the Kara and Laptev Seas in the Eastern Arctic Ocean. We discuss relevant circulation features including riverine freshwater, Atlantic-derived water, and polynya-formed dense water, emphasize Vilkitsky Strait (VS) as an important Kara Sea gateway, and analyze the role of the adjacent 250 km-long submarine Vilkitsky Trough (VT) for the Arctic boundary current. Expeditions in 2013 and 2014 operated closely spaced hydrographic transects and 1 year-long oceanographic mooring near VT’s southern slope, and found persistent annually averaged flow of 0.2 m s21 toward the Nansen Basin. The flow is nearly barotropic from winter through early summer and becomes surface intensified with maximum velocities of 0.35 m s21 from August to October. Thermal wind shear is maximal above the southern flank at 30 m depth, in agreement with basinward flow above VT’s southern slope. The subsurface features a steep front separating warm (–0.58C) Atlantic-derived waters in central VT from cold (〈–1.58C) shelf waters, which episodically migrates across the trough indicated by current reversals and temperature fluctuations. Shelf-transformed waters dominate above VT’s slope, measuring near-freezing temperatures throughout the water column at salinities of 34–35. These dense waters are vigorously advected toward the Eurasian Basin and characterize VT as a conduit for near-freezing waters that could potentially supply the Arctic Ocean’s lower halocline, cool Atlantic water, and ventilate the deeper Arctic Ocean. Our observations from the northwest Laptev Sea highlight a topographically complex region with swift currents, several water masses, narrow fronts, polynyas, and topographically channeled storms.

Description: The mechanisms causing widespread flow acceleration of Jakobshavn Isbræ, West Greenland, remain unclear despite an abundance of observations and modeling studies. Here we simulate the glacier's evolution from 1985 to 2016 using a three-dimensional thermomechanical ice flow model. The model captures the timing and 90% of the observed changes by forcing the calving front. Basal drag in the trough is low, and lateral drag balances the ice stream's driving stress. The calving front position is the dominant control on changes of Jakobshavn Isbræ since the ice viscosity in the shear margins instantaneously drops in response to the stress perturbation caused by calving front retreat, which allows for widespread flow acceleration. Gradual shear margin warming contributes 5 to 10% to the total acceleration. Our simulations suggest that the glacier will contribute to eustatic sea level rise at a rate comparable to or higher than at present.

Description: Greenland's bed topography is a primary control on ice flow, grounding line migration, calving dynamics and subglacial drainage. Moreover, fjord bathymetry regulates the penetration of warm Atlantic Water (AW) that rapidly melts and undercuts Greenland's marine-terminating glaciers. Here, we present a new compilation of Greenland bed topography that assimilates seafloor bathymetry and ice thickness data through a mass conservation (MC) approach. A new 150-m horizontal resolution bed topography/bathymetric map of Greenland is constructed with seamless transitions at the ice/ocean interface, yielding major improvements over previous datasets, particularly in the marine-terminating sectors of northwest and southeast Greenland. Our map reveals the total sea level potential of the Greenland Ice Sheet is 7.42±0.05 m, which is 7 cm greater than previous estimates. Furthermore, it explains recent calving front response of numerous outlet glaciers and reveals new pathways by which AW can access glaciers with marine-based basins, thereby highlighting sectors of Greenland that are most vulnerable to future oceanic forcing.

Description: We present a simulation of Antarctic iceberg drift and melting that includes small, medium-sized, and giant tabular icebergs with a realistic size distribution. For the first time, an iceberg model is initialized with a set of nearly 7000 observed iceberg positions and sizes around Antarctica. The study highlights the necessity to account for larger and giant icebergs in order to obtain accurate melt climatologies. We simulate drift and lateral melt using iceberg-draft averaged ocean currents, temperature, and salinity. A new basal melting scheme, originally applied in ice shelf melting studies, uses in situ temperature, salinity, and relative velocities at an iceberg's bottom. Climatology estimates of Antarctic iceberg melting based on simulations of small (≤ 2.2 km), 'small-to-medium'-sized (≤ 10 km), and small-to-giant icebergs (including icebergs 〉 10 km) exhibit differential characteristics: successive inclusion of larger icebergs leads to a reduced seasonality of the iceberg meltwater flux and a shift of the mass input to the area north of 58 °S, while less meltwater is released into the coastal areas. This suggests that estimates of meltwater input solely based on the simulation of small icebergs introduce a systematic meridional bias; they underestimate the northward mass transport and are, thus, closer to the rather crude treatment of iceberg melting as coastal runoff in models without an interactive iceberg model. Future ocean simulations will benefit from the improved meridional distribution of iceberg melt, especially in climate change scenarios where the impact of iceberg melt is likely to increase due to increased calving from the Antarctic ice sheet.

Description: The Southern Hemisphere Antarctic stratosphere experienced two noteworthy events in 2015: a significant injection of sulfur from the Calbuco volcanic eruption in Chile in April, and a record-large Antarctic ozone hole in October and November. Here, we quantify Calbuco's influence on stratospheric ozone depletion in austral spring 2015 using observations and an earth system model. We analyze ozonesondes, as well as data from the Microwave Limb Sounder. We employ the Community Earth System Model, version 1, with the Whole Atmosphere Community Climate Model (CESM1(WACCM)) in a specified dynamics setup, which includes calculations of volcanic effects. The Cloud Aerosol Lidar with Orthogonal Polarization data indicate enhanced volcanic liquid sulfate 532 nm backscatter values as far poleward as 68°S during October and November (in broad agreement with WACCM). Comparison of the location of the enhanced aerosols to ozone data supports the view that aerosols played a major role in increasing the ozone hole size, especially at pressure levels between 150 and 100 hPa. Ozonesonde vertical ozone profiles from the sites of Syowa, South Pole, and Neumayer, display the lowest individual October or November measurements at 150 hPa since the 1991 Mt. Pinatubo eruption period, with Davis showing similarly low values, but no available 1990s data. The analysis suggests that under the cold conditions ideal for ozone depletion, stratospheric volcanic aerosol particles from the moderate-magnitude eruption of Calbuco in 2015 greatly enhanced austral ozone depletion, particularly at 55–68°S, where liquid binary sulfate aerosols have a large influence on ozone concentrations.

Description: Near-surface air temperatures close to 0°C were observed in situ over sea ice in the central Arctic during the last three winter seasons. Here we use in situ winter (December–March) temperature observations, such as those from Soviet North Pole drifting stations and ocean buoys, to determine how common Arctic winter warming events are. Observations of winter warming events exist over most of the Arctic Basin. Temperatures exceeding -5°C were observed during 〉30% of winters from 1954 to 2010 by North Pole drifting stations or ocean buoys. Using the ERA-Interim record (1979–2016), we show that the North Pole (NP) region typically experiences 10 warming events (T2m 〉 10°C) per winter, compared with only five in the Pacific Central Arctic (PCA). There is a positive trend in the overall duration of winter warming events for both the NP region (4.25 days/decade) and PCA (1.16 days/decade), due to an increased number of events of longer duration.

Description: The Beaufort Gyre (BG) is the largest liquid freshwater reservoir of the Arctic Ocean. The liquid freshwater content (FWC) significantly increased in the BG in the 2000s during an anticyclonic wind regime and remained at a high level despite a transition to a more cyclonic state in the early 2010s. It is not well understood to what extent the rapid sea ice decline during this period has modified the trend and variability of the BG liquid FWC in the past decade. Our numerical simulations show that about 50% of the liquid freshwater accumulated in the BG in the 2000s can be explained by the sea ice decline caused by the Arctic atmospheric warming. Among this part of the FWC increase, 60% can be attributed to surface freshening associated with the reduction of the net sea ice thermodynamic growth rate, and 40% to changes in ocean circulation, which makes freshwater more accessible to the BG for storage. Thus, the rapid increase of the BG FWC in the 2000s was due to the concurrence of the anticyclonic wind regime and the high freshwater availability. We also find that if the Arctic sea ice had not declined, the liquid FWC in the BG would have shown a stronger decreasing tendency at the beginning of the 2010s owing to the cyclonic wind regime. From our results we argue that changes in sea ice conditions should be adequately taken into account when it comes to understanding and predicting variations of BG liquid FWC in a changing climate.

Description: Retrogressive thaw slumps (RTSs) are among the most active landforms in the Arctic; their number has increased significantly over the past decades. While processes initiating discrete RTSs are well identified, the major terrain controls on the development of coastal RTSs at a regional scale are not yet defined. Our research reveals the main geomorphic factors that determine the development of RTSs along a 238 km segment of the Yukon Coast, Canada. We (1) show the current extent of RTSs, (2) ascertain the factors controlling their activity and initiation, and (3) explain the spatial differences in the density and areal coverage of RTSs. We mapped and classified 287 RTSs using high-resolution satellite images acquired in 2011. We highlighted the main terrain controls over their development using univariate regression trees model. Coastal geomorphology influenced both the activity and initiation of RTSs: active RTSs and RTSs initiated after 1972 occurred primarily on terrains with slope angles greater than 3.9° and 5.9°, respectively. The density and areal coverage of RTSs were constrained by the volume and thickness of massive ice bodies. Differences in rates of coastal change along the coast did not affect the model. We infer that rates of coastal change averaged over a 39 year period are unable to reflect the complex relationship between RTSs and coastline dynamics. We emphasize the need for large-scale studies of RTSs to evaluate their impact on the ecosystem and to measure their contribution to the global carbon budget.

Description: Sea ice formation is accompanied by the rejection of salt which in nature tends to be mixed vertically by the formation of convective plumes. Here we analyze the influence of a salt plume parameterization (SPP) in an atmosphere-sea ice-ocean model. Two 330 years long simulations have been conducted with the AWI Climate Model. In the reference simulation, the rejected salt in the Arctic Ocean is added to the upper-most ocean layer. This approach is commonly used in climate modelling. In another experiment, employing SPP, the rejected salt is vertically redistributed within the mixed layer based on a power law profile that mimics the penetration of salt plumes. We discuss the effects of this redistribution on the simulated mean state and on atmosphere-ocean linkages associated with the intensity of deep water formation. We find that the salt plume parametrization leads to simultaneous increase of sea ice (volume and concentration) and decrease of sea surface salinity in the Arctic. The SPP considerably alters the interplay between the atmosphere and the ocean in the Nordic Seas. The parameterization modifies the ocean ventilation; however, resulting changes in temperature and salinity largely compensate each other in terms of density so that the overturning circulation is not significantly affected.

Description: To better understand the reaction of Arctic coasts to increasing environmental pressure, coastal changes along a 210-km length of the Yukon Territory coast in north-west Canada were investigated. Shoreline positions were acquired from aerial and satellite images between 1951 and 2011. Shoreline change rates were calculated for multiple time periods along the entire coast and at six key sites. Additionally, Differential Global Positioning System (DGPS) measurements of shoreline positions from seven field sites were used to analyze coastal dynamics from 1991 to 2015 at higher spatial resolution. The whole coast has a consistent, spatially averaged mean rate of shoreline change of 0.7 ± 0.2 m/a with a general trend of decreasing erosion from west to east. Additional data from six key sites shows that the mean shoreline change rate decreased from �1.3 ± 0.8 (1950s–1970s) to �0.5 ± 0.6 m/a (1970s–1990s). This was followed by a significant increase in shoreline change to �1.3 ± 0.3 m/a in the 1990s to 2011. This increase is confirmed by DGPS measurements that indicate increased erosion rates at local rates up to �8.9 m/a since 2006. Ground surveys and observations with remote sensing data indicate that the current rate of shoreline retreat along some parts of the Yukon coast is higher than at any time before in the 64-year-long observation record. Enhanced availability of material in turn might favor the buildup of gravel features, which have been growing in extent throughout the last six decades.

Description: The Filchner‐Ronne Ice Shelf, the ocean cavity beneath it, and the Weddell Sea that bounds it, form an important part of the global climate system by modulating ice discharge from the Antarctic Ice Sheet and producing cold dense water masses that feed the global thermohaline circulation. A prerequisite for modeling the ice sheet and oceanographic processes within the cavity is an accurate knowledge of the sub‐ice sheet bedrock elevation, but beneath the ice shelf where airborne radar cannot penetrate, bathymetric data are sparse. This paper presents new seismic point measurements of cavity geometry from a particularly poorly sampled region south of Berkner Island that connects the Filchner and Ronne ice shelves. An updated bathymetric grid formed by combining the new data with existing data sets reveals several new features. In particular, a sill running between Berkner Island and the mainland could alter ocean circulation within the cavity and change our understanding of paleo‐ice stream flow in the region. Also revealed are deep troughs near the grounding lines of Foundation and Support Force ice streams, which provide access for seawater with melting potential. Running an ocean tidal model with the new bathymetry reveals large differences in tidal current velocities, both within the new gridded region and further afield, potentially affecting sub‐ice shelf melt rates.

Description: Understanding the influence of the Arctic troposphere on the climate at midlatitudes is critical for projecting the impacts of ongoing and anticipated Arctic changes such as Arctic amplification and rapid sea ice decline over the Northern Hemisphere. In this study, we analyze a suite of atmospheric model experiments, with and without atmospheric relaxation toward reanalysis data, to study the impacts of the Arctic troposphere on the midlatitude atmospheric circulation and climate variability. The Arctic troposphere is found to strongly impact the interannual variability of the atmospheric circulation and temperature over the midlatitude continents. The major mechanisms for the impacts of Arctic troposphere include the modulation of the large‐scale atmospheric circulation, the associated heat transport over the continents, and the impacts on synoptic variations in the North Atlantic‐European sector. The impact of the Arctic troposphere on the intensity of the Siberian High is an important factor for how the Arctic can influence temperature variability in south Siberia and East Asia. The trends in the Arctic troposphere in recent decades are closely linked to the recent winter cooling in Northern Eurasia. These recent cooling trends are not driven by the trends in sea surface temperature/sea ice, tropical atmosphere, and the stratosphere. It is argued that the temperature trend pattern of warm Arctic‐cold Eurasia is a manifestation of two possibly independent phenomena and the cooling trend is contributed to by the Arctic troposphere through impacting the large‐scale atmospheric circulation, the atmospheric blocking frequency, and the intensity of the Siberian High.

Description: Digital grids of basement age of the world’s oceans are essential for modern geodynamic and paleoceanographic studies. Any such grid is built using a plate kinematic model, whose accuracy and reli- ability directly influence the accuracy and reliability of the grid. We present a seafloor age grid for the South Atlantic based on a recent high-resolution plate kinematic model. The grid is built from a data set of points whose ages are defined in or for the plate kinematic model, incorporating breaks at tectonic boundaries like fracture zones where the age function is discontinuous. We compare predictions of the new grid and of a previously published one, which is based on an older plate kinematic model, to magnetic isochron pick data sets. The comparison shows the new grid to provide a more reliable depiction of seafloor age in the South Atlantic. Numerical estimates of the new grid’s uncertainty are determined by interpolation between (1) misfits at grid cells coinciding with magnetic isochron ages, (2) misfits implied by locational uncertainties in predicted isochrons propagated from uncertainties in the plate kinematic model, and (3) by the proxim- ities of cells to fracture zone traces or ridge-jump scars. Estimated total uncertainty is 〈10 My for 94% of the grid and 〈5 My for 72%, but much larger in areas where magnetic anomaly data are scarce (such as the Cretaceous Normal Superchron) and in the vicinity of long-offset fracture zones.

Description: The deep southern component water (SCW), comprising Lower Circumpolar Deep Water (LCDW) and Antarctic Bottom Water (AABW), is a major component of the global oceanic circulation. It has been suggested that the deep Atlantic water mass structure changed significantly during the last glacial/interglacial cycle. However, deep SCW source-proximal records remain sparse. Here we present three coherent deep SCW paleocurrent records from the deep Argentine continental margin shedding light on deep water circulation and deep SCW flow strength in the Southwest Atlantic since the Last Glacial Maximum (LGM). Based on increased sortable silt values, we propose enhanced deep SCW flow strength from 14 to 10 cal ka B.P. relative to the early deglacial/LGM and the Holocene. We propose a direct influence of deep northern component water (NCW) on deep SCW flow strength due to vertical narrowing of deep SCW spreading, concurrent with a migration of the high-energetic LCDW/AABW interface occupying our core sites. We suggest a shoaled NCW until 13 cal ka B.P., thereby providing space for deep SCW spreading that resulted in reduced carbonate preservation at our core sites. Increased carbonate content from 13 cal ka B.P. indicates that the NCW expanded changing deep water properties at our core sites in the deep Southwest Atlantic. However, southern sourced terrigenous sediments continued to be deposited at our core sites, suggesting that deep SCW flow was uninterrupted along the Argentine continental margin since the LGM.

Description: Measurements of late springtime nutrient concentrations in Arctic waters are relatively rare due to the extensive sea ice cover that makes sampling difficult. During the SUBICE cruise in May-June 2014, an extensive survey of hydrography and pre-bloom nutrient concentrations was conducted in the Chukchi Sea. Cold (〈 -1.5°C) winter water was prevalent throughout the Chukchi Sea shelf, and the water column was weakly stratified. Nitrate (NO3-) concentration averaged 12.6±1.92 µM in surface waters and 14.0±1.91 µM near the bottom and was significantly correlated with salinity. The highest NO3- concentrations were associated with winter water within the Central Channel flow path. NO3- concentrations were much reduced near the northern shelfbreak within the upper halocline waters of the Canada Basin and along the eastern side of the shelf near the Alaskan coast. Net community production (NCP), estimated as the difference in depth-integrated NO3- content between spring (this study) and summer (historical), varied from 28-38 g C m-2 a-1. This is much lower than previous NCP estimates using NO3- concentrations from the southeastern Bering Sea as a baseline. These results demonstrate the importance of using local profiles of NO3- measured as close to the beginning of the spring bloom as possible when estimating NCP.

Description: The Eger Rift is an active element of the European Cenozoic Rift System associated with intense Cenozoic intraplate alkaline volcanism and system of sedimentary basins. The intracontinental Cheb Basin at its western part displays geodynamic activity with fluid emanations, persistent seismicity, Cenozoic volcanism, and neotectonic crustal movements at the intersections of major intraplate faults. In this paper, we study detailed geometry of the crust/mantle boundary and its possible origin in the western Eger Rift. We review existing seismic and seismological studies, provide new interpretation of the reflection profile 9HR, and supplement it by new results from local seismicity. We identify significant lateral variations of the high-velocity lower crust and relate them to the distribution and chemical status of mantle-derived fluids and to xenolith studies from corresponding depths. New interpretation based on combined seismic and isotope study points to a local-scale magmatic emplacement at the base of the continental crust within a new rift environment. This concept of magmatic underplating is supported by detecting two types of the lower crust: a high-velocity lower crust with pronounced reflectivity and a high-velocity reflection-free lower crust. The character of the underplated material enables to differentiate timing and tectonic setting of two episodes with different times of origin of underplating events. The lower crust with high reflectivity evidences magmatic underplating west of the Eger Rift of the Late Variscan age. The reflection-free lower crust together with a strong reflector at its top at depths of ~28–30 km forms a magma body indicating magmatic underplating of the late Cenozoic (middle and upper Miocene) to recent. Spatial and temporal relations to recent geodynamic processes suggest active magmatic underplating in the intracontinental setting.

Description: Antarctica is the largest reservoir of ice on Earth. Understanding its ice sheet dynamics is crucial to unraveling past global climate change and making robust climatic and sea level predictions. Of the basic parameters that shape and control ice flow, the most poorly known is geothermal heat flux. Direct observations of heat flux are difficult to obtain in Antarctica, and until now continent-wide heat flux maps have only been derived from low-resolution satellite magnetic and seismological data. We present a high-resolution heat flux map and associated uncertainty derived from spectral analysis of the most advanced continental compilation of airborne magnetic data. Small-scale spatial variability and features consistent with known geology are better reproduced than in previous models, between 36% and 50%. Our high-resolution heat flux map and its uncertainty distribution provide an important new boundary condition to be used in studies on future subglacial hydrology, ice sheet dynamics, and sea level change.

Description: The evidence from both data and models indicates that specific equilibrium climate sensitivity S[X]—the global annual mean surface temperature change (ΔTg) as a response to a change in radiative forcing X (ΔR[X])—is state dependent. Such a state dependency implies that the best fit in the scatterplot of ΔTg versus ΔR[X] is not a linear regression but can be some nonlinear or even nonsmooth function. While for the conventional linear case the slope (gradient) of the regression is correctly interpreted as the specific equilibrium climate sensitivity S[X], the interpretation is not straightforward in the nonlinear case. We here explain how such a state-dependent scatterplot needs to be interpreted and provide a theoretical understanding—or generalization—how to quantify S[X] in the nonlinear case. Finally, from data covering the last 2.1 Myr we show that—due to state dependency—the specific equilibrium climate sensitivity which considers radiative forcing of CO2 and land ice sheet (LI) albedo, math formula, is larger during interglacial states than during glacial conditions by more than a factor 2.

Description: We present vertically resolved observations of aerosol composition during pristine summertime Arctic background conditions. The methansulfonic acid (MSA)-to-sulfate ratio peaked near the surface (mean 0.10), indicating a contribution from ocean-derived biogenic sulfur. Similarly, the organic aerosol (OA)-to-sulfate ratio increased toward the surface (mean 2.0). Both MSA-to-sulfate and OA-to-sulfate ratios were significantly correlated with FLEXPART-WRF-predicted air mass residence time over open water, indicating marine-influenced OA. External mixing of sea salt aerosol from a larger number fraction of organic, sulfate, and amine-containing particles, together with low wind speeds (median 4.7 m s−1), suggests a role for secondary organic aerosol formation. Cloud condensation nuclei concentrations were nearly constant (∼120 cm−3) when the OA fraction was 〈60% and increased to 350 cm−3 when the organic fraction was larger and residence times over open water were longer. Our observations illustrate the importance of marine-influenced OA under Arctic background conditions, which are likely to change as the Arctic transitions to larger areas of open water.

Description: Arctic sea ice has displayed significant thinning as well as an increase in drift speed in recent years. Taken together this suggests an associated rise in sea ice deformation rate. A winter and spring expedition to the sea ice covered region north of Svalbard–the Norwegian young sea ICE2015 expedition (N-ICE2015)—gave an opportunity to deploy extensive buoy arrays and to monitor the deformation of the first-year and secondyear ice now common in the majority of the Arctic Basin. During the 5 month long expedition, the ice cover underwent several strong deformation events, including a powerful storm in early February that damaged the ice cover irreversibly. The values of total deformation measured during N-ICE2015 exceed previously measured values in the Arctic Basin at similar scales: At 100 km scale, N-ICE2015 values averaged above 0.1 d-1, compared to rates of 0.08 d-1 or less for previous buoy arrays. The exponent of the power law between the deformation length scale and total deformation developed over the season from 0.37 to 0.54 with an abrupt increase immediately after the early February storm, indicating a weakened ice cover with more free drift of the sea ice floes. Our results point to a general increase in deformation associated with the younger and thinner Arctic sea ice and to a potentially destructive role of winter storms.

Description: Large units of disrupted radiostratigraphy (UDR) are visible in many radio-echo sounding data sets from the Greenland Ice Sheet. This study investigates whether supercooling freeze-on rates at the bed can cause the observed UDR. We use a subglacial hydrology model to calculate both freezing and melting rates at the base of the ice sheet in a distributed sheet and within basal channels. We find that while supercooling freeze-on is a phenomenon that occurs in many areas of the ice sheet, there is no discernible correlation with the occurrence of UDR. The supercooling freeze-on rates are so low that it would require tens of thousands of years with minimal downstream ice motion to form the hundreds of meters of disrupted radiostratigraphy. Overall, the melt rates at the base of the ice sheet greatly overwhelm the freeze-on rates, which has implications for mass balance calculations of Greenland ice.

Description: The detailed Holocene inundation history of the Bermuda North Lagoon may be used as model for transgressive and highstand sequences in carbonate platforms. Sedimentation and facies development were controlled largely by sea‐level rise and antecedent topography. Four late Pleistocene to Holocene sequences may be identified in North Lagoon based on a combined analysis of 200 km shallow reflection seismics and 39 cores including 29 radiometric and U/Th‐ages. The sequences were deposited during sea‐level highstands and are separated by subaerial exposure horizons that formed during sea‐level lowstands. Sequence 1 (inferred MIS 7) consists of well‐cemented carbonate sands. Sequence 2 (MIS 5) is up to 20 m thick and consists of well‐sorted, inter‐reefal sands and reef sediments with mound‐like structures. Sequence 3 (inferred MIS 3) is up to ca 6 m thick and accumulated in topographic lows of the underlying sequences some 20 m below modern sea‐level. Sequence 4 (MIS 1, Holocene) includes lagoonal sediments up to 10 m thick, and reefs that accumulated on topographic highs of the MIS 5 sequences. Holocene sediments in topographic lows include peat, peaty sediment, freshwater mud, restricted marine carbonates, and open lagoonal carbonate sediments deposited in seagrass beds, shallow water, and deeper lagoon areas. Upward fining is an expression of deepening and the development of a reef‐protected lagoon environment. Holocene sedimentation on topographic highs usually lacks freshwater and transitional facies and starts with shallow marine mollusc shell accumulations overlain by carbonate sediments that show fining upward. Packstone (68%), wackestone (22%), grainstone (9%) and mudstone (1%) textures occur in cores, with Halimeda, molluscs, coralline algae and foraminifera being the most common constituent particles; coral fragments are rare. During the Holocene, an estimated volume of 1 km3 of carbonate sediments was deposited in North Lagoon. Average sedimentation rates are estimated to be 0.32 m/kyr.

Description: A climatically-induced acceleration in ocean-driven melting of Antarctic ice shelves would have consequences for both the discharge of continental ice into the ocean and thus global sea level, and for the formation of Antarctic Bottom Water and the oceanic meridional overturning circulation. Using a novel gas-tight in-situ water sampler, noble gas samples have been collected from six locations beneath the Filchner Ice Shelf, the first such samples from beneath an Antarctic Ice shelf. Helium and neon are uniquely suited as tracers of glacial meltwater in the ocean. Basal meltwater fractions range from 3.6% near the ice shelf base to 0.5% near the sea floor, with distinct regional differences. We estimate an average basal melt rate for the Filchner-Ronne Ice Shelf of 177 ± 95 Gt/year, independently confirming previous results. We calculate that up to 2.7% of the meltwater has been refrozen, and we identify a local source of crustal helium.

Description: We investigate the impact of different CO2 levels and different subarctic gateway configurations on the surface temperatures during the latest Cretaceous using the Earth System Model COSMOS. The simulated temperatures are compared with the surface temperature reconstructions based on a recent compilation of the latest Cretaceous proxies. In our numerical experiments, the CO2 level ranges from 1 to 6 times the preindustrial (PI) CO2 level of 280 ppm. On a global scale, the most reasonable match between modeling and proxy data is obtained for the experiments with 3 to 5 × PI CO2 concentrations. However, the simulated low- (high-) latitude temperatures are too high (low) as compared to the proxy data. The moderate CO2 levels scenarios might be more realistic, if we take into account proxy data and the dead zone effect criterion. Furthermore, we test if the model-data discrepancies can be caused by too simplistic proxy-data interpretations. This is distinctly seen at high latitudes, where most proxies are biased toward summer temperatures. Additional sensitivity experiments with different ocean gateway configurations and constant CO2 level indicate only minor surface temperatures changes (〈~1°C) on a global scale, with higher values (up to ~8°C) on a regional scale. These findings imply that modeled and reconstructed temperature gradients are to a large degree only qualitatively comparable, providing challenges for the interpretation of proxy data and/or model sensitivity. With respect to the latter, our results suggest that an assessment of greenhouse worlds is best constrained by temperatures in the midlatitudes.

Description: State-of-the-art Arctic Ocean mean sea surface (MSS) models and global geoid models (GGMs) are used to support sea ice freeboard estimation from satellite altimeters, as well as in oceanographic studies such as mapping sea level anomalies and mean dynamic ocean topography. However, errors in a given model in the high frequency domain, primarily due to unresolved gravity features, can result in errors in the estimated along-track freeboard. These errors are exacerbated in areas with a sparse lead distribution in consolidated ice pack conditions. Additionally model errors can impact ocean geostrophic currents, derived from satellite altimeter data, while remaining biases in these models may impact longer-term, multi-sensor oceanographic time-series of sea level change in the Arctic. This study focuses on an assessment of five state-of-the-art Arctic MSS models (UCL13/04, DTU15/13/10) and a commonly used GGM (EGM2008). We describe errors due to unresolved gravity features, inter-satellite biases, and remaining satellite orbit errors, and their impact on the derivation of sea ice freeboard. The latest MSS models, incorporating CryoSat-2 sea surface height measurements, show improved definition of gravity features, such as the Gakkel Ridge. The standard deviation between models ranges 0.03-0.25 m. The impact of remaining MSS/GGM errors on freeboard retrieval can reach several decimeters in parts of the Arctic. While the maximum observed freeboard difference found in the central Arctic was 0.59 m (UCL13 MSS minus EGM2008 GGM), the standard deviation in freeboard differences is 0.03-0.06 m.

Description: Ozonesonde data from four sites are analyzed in relation to 191 solar protons events (SPEs) from 1989-2016. Analysis shows ozone depletion (~10-35 km altitude) commencing following the SPEs. Seasonally-corrected ozone data demonstrate that depletions occur only in winter/early-spring above sites where the northern hemisphere polar vortex (PV) can be present. A rapid reduction in stratospheric ozone is observed with the maximum decrease occurring ~10-20 days after SPEs. Ozone levels remain depleted in excess of 30 days. No depletion is observed above sites completely outside the PV. No depletion is observed in relation to 191 random epochs at any site at any time of year. Results point to the role of indirect ozone destruction, most likely via the rapid descent of long-lived NOx species in the PV during the polar winter.

Description: Outlet glaciers of the Greenland Ice Sheet transport ice from the interior to the ocean and contribute directly to sea level rise because because discharge and ablation often exceed the accumulation. To develop a better understanding of these fast flowing glaciers, we investigate the basal conditions of Store Glacier, a large outlet glacier flowing into Uummannaq Fjord in West Greenland. We use two crossing seismic profiles acquired near the centreline, 30 km upstream of the calving front, to interpret the physical nature of the ice and bed. We identify one notably englacial and two notably subglacial seismic reflections on both profiles. The englacial reflection represents a change in crystal orientation fabric, interpreted to be the Holocene–Wisconsin transition. From Amplitude Versus Angle (AVA) analysis we infer that the deepest ∼80 m of ice of the parallel-flow profile below this reflection is anisotropic with an enhancement of simple shear of ∼2. The ice is underlain by ∼45 m of unconsolidated sediments, below which there is a strong reflection caused by the transition to consolidated sediments. In the across-flow profile subglacial properties vary over small scale and the polarity of the ice–bed reflection switches from positive to negative. We interpret these as patches of different basal slipperiness associated with variable amounts of water. Our results illustrate variability in basal properties, and hence ice-bed coupling, at a spatial scale of ∼100 m, highlighting the need for direct observations of the bed to improve the basal boundary conditions in ice-dynamic models.

Description: Species flocks (SFs) fascinate evolutionary biologists who wonder whether such striking diversification can be driven by normal evolutionary processes. Multiple definitions of SFs have hindered the study of their origins. Previous studies identified a monophyletic taxon as a SF if it displays high speciosity in an area in which it is endemic (criterion 1), high ecological diversity among species (criterion 2), and if it dominates the habitat in terms of biomass (criterion 3); we used these criteria in our analyses. Our starting hypothesis is that normal evolutionary processes may provide a sufficient explanation for most SFs. We thus clearly separate each criterion and identify which biological (intrinsic) and environmental (extrinsic) traits are most favourable to their realization. The first part focuses on evolutionary processes. We highlight that some popular putative causes of SFs, such as key innovations or ecological speciation, are neither necessary nor sufficient to fulfill some or all of the three criteria. Initial differentiation mechanisms are diverse and difficult to identify a posteriori because a primary differentiation of one type (genetic, ecological or geographical) often promotes other types of differentiation. Furthermore, the criteria are not independent: positive feedbacks between speciosity and ecological diversity among species are expected whatever the initial cause of differentiation, and ecological diversity should enhance habitat dominance at the clade level. We then identify intrinsic and extrinsic factors that favour each criterion. Low dispersal emerges as a convincing driver of speciosity. Except for a genomic architecture favouring ecological speciation, for which assessment is difficult, high effective population sizes are the single intrinsic factor that directly enhances speciosity, ecological diversity and habitat dominance. No extrinsic factor appeared to enhance all criteria simultaneously but a combination of factors (insularity, fragmentation and environmental stability) may favour the three criteria, although the effect is indirect for habitat dominance. We then apply this analytical framework to Antarctic marine environments by analysing data from 18 speciose clades belonging to echinoderms (five unrelated clades), notothenioid fishes (five clades) and peracarid crustaceans (eight clades). Antarctic shelf environments and history appear favourable to endemicity and speciosity, but not to ecological specialization. Two main patterns are distinguished among taxa. (i) In echinoderms, many brooding, species‐rich and endemic clades are reported, but without remarkable ecological diversity or habitat dominance. In these taxa, loss of the larval stage is probably a consequence of past Antarctic environmental factors, and brooding is suggested to be responsible for enhanced allopatric speciation (via dispersal limitation). (ii) In notothenioids and peracarids, many clades fulfill all three SF criteria. This could result from unusual features in fish and crustaceans: chromosome instability and key innovations (antifreeze proteins) in notothenioids, ecological opportunity in peracarids, and a genomic architecture favouring ecological speciation in both groups. Therefore, the data do not support our starting point that normal evolutionary factors or processes drive SFs because in these two groups uncommon intrinsic features or ecological opportunity provide the best explanation. The utility of the three‐criterion SF concept is therefore questioned and guidelines are given for future studies.

Description: Iron (Fe), cobalt (Co), and vitamin B12 addition experiments were performed in the eastern Equatorial Pacific/Peruvian upwelling zone during the 2015 El Niño event. Near the Peruvian coastline, apparent photosystem II photochemical efficiencies (Fv/Fm) were unchanged by nutrient addition and chlorophyll a tripled in untreated controls over 2 days, indicating nutrient replete conditions. Conversely, Fe amendment further away from the coastline in the high nitrate, low Fe zone significantly increased Fv/Fm and chlorophyll a concentrations. Mean chlorophyll a was further enhanced following supply of Fe + Co and Fe + B12 relative to Fe alone, but this was not statistically significant; further offshore, reported Co depletion relative to Fe could enhance responses. The persistence of Fe limitation in this system under a developing El Niño, as previously demonstrated under non-El Niño conditions, suggests that diminished upwelled Fe is likely an important factor driving reductions in offshore phytoplankton productivity during these events. Plain Language Summary: Phytoplankton productivity in the Equatorial Pacific is critical for curbing CO2 outgassing from upwelling waters and sustaining globally important fisheries. We tested which micronutrients were limiting phytoplankton growth in the Equatorial Pacific during the 2015 El Niño. To date evidence for nutrient limitation status during these events remains indirect. We show iron is limiting offshore of Peru and that cobalt or vitamin B12 could be approaching limitation, with limitation by the latter micronutrients possibly becoming more important further offshore. Linked to satellite data, the new results shed light on critical controls on marine productivity in this biogeochemically/economically important region. Our results suggest reduced upwelled iron-predicted under El Niño conditions would be primarily responsible for observed offshore Peru productivity decreases.

Description: The climate of the Sahara and Arabian Deserts during the Little Ice Age is not well known, due to a lack of annually resolved natural and documentary archives. We present an annual reconstruction of temperature and aridity derived from Sr/Ca and oxygen isotopes in a coral of the desert‐surrounded northern Red Sea. Our data indicate that the eastern Sahara and Arabian Deserts did not experience pronounced cooling during the late Little Ice Age (~1750–1850) but suggest an even more arid mean climate than in the following ~150 years. The mild temperatures are broadly in line with predominantly negative phases of the North Atlantic Oscillation during the Little Ice Age. The more arid climate is best explained by meridional advection of dry continental air from Eurasia. We find evidence for an abrupt termination of the more arid climate after 1850, coincident with a reorganization of the atmospheric circulation over Europe.

Description: Abstract Waterbodies in the arctic permafrost zone are considered a major source of the greenhouse gas methane (CH4) in addition to CH4 emissions from arctic wetlands. However, the spatio-temporal variability of CH4 fluxes from waterbodies compli- cates spatial extrapolation of CH4 measurements from single waterbodies. There- fore, their contribution to the CH4 budget of the arctic permafrost zone is not yet well understood. Using the example of two study areas of 1,000 km2 each in the Mackenzie Delta, Canada, we approach this issue (i) by analyzing correlations on the landscape scale between numerous waterbodies and CH4 fluxes and (ii) by analyzing the influence of the spatial resolution of CH4 flux data on the detected relation- ships. A CH4 flux map with a resolution of 100 m was derived from two aircraft eddy-covariance campaigns in the summers of 2012 and 2013. We combined the CH4 flux map with high spatial resolution (2.5 m) waterbody maps from the Per- mafrost Region Pond and Lake Database and classified the waterbody depth based on Sentinel-1 SAR backscatter data. Subsequently, we reduced the resolution of the CH4 flux map to analyze if different spatial resolutions of CH4 flux data affected the detectability of relationships between waterbody coverage, number, depth, or size and the CH4 flux. We did not find consistent correlations between waterbody characteristics and the CH4 flux in the two study areas across the different resolu- tions. Our results indicate that waterbodies in permafrost landscapes, even if they seem to be emission hot spots on an individual basis or contain zones of above average emissions, do currently not necessarily translate into significant CH4 emis- sion hot spots on a regional scale, but their role might change in a warmer climate. KEYWORDS airborne eddy-covariance, Arctic, CH4, lakes, ponds, remote sensing, Sentinel-1, TerraSAR-X

Description: We reanalyze existing paleodata of global mean surface temperature ΔTg and radiative forcing ΔR of CO2 and land ice albedo for the last 800,000 years to show that a state‐dependency in paleoclimate sensitivity S, as previously suggested, is only found if ΔTg is based on reconstructions, and not when ΔTg is based on model simulations. Furthermore, during times of decreasing obliquity (periods of land ice sheet growth and sea level fall) the multimillennial component of reconstructed ΔTg diverges from CO2, while in simulations both variables vary more synchronously, suggesting that the differences during these times are due to relatively low rates of simulated land ice growth and associated cooling. To produce a reconstruction‐based extrapolation of S for the future, we exclude intervals with strong ΔTg‐CO2 divergence and find that S is less state‐dependent, or even constant state‐independent), yielding a mean equilibrium warming of 2–4 K for a doubling of CO2.

Description: Reducing uncertainties about carbon cycling is important in the Arctic where rapid environmental changes contribute to enhanced mobilization of carbon. Here we quantify soil organic carbon (SOC) contents of permafrost soils along the Yukon Coastal Plain and determine the annual fluxes from coastal erosion. Different terrain units were assessed based on surficial geology, morphology, and ground ice conditions. To account for the volume of wedge ice and massive ice in a unit, SOC contents were reduced by 19% and sediment contents by 16%. The SOC content in a 1 m² column of soil varied according to the height of the bluff, ranging from 30 to 662 kg, with a mean value of 183 kg. Forty‐four per cent of the SOC was within the top 1 m of soil and values varied based on surficial materials, ranging from 30 to 53 kg C/m³, with a mean of 41 kg. Eighty per cent of the shoreline was erosive with a mean annual rate of change of −0.7 m/yr. This resulted in a SOC flux per meter of shoreline of 132 kg C/m/yr, and a total flux for the entire 282 km of the Yukon coast of 35.5 × 10^6 kg C/yr (0.036 Tg C/yr). The mean flux of sediment per meter of shoreline was 5.3 × 103 kg/m/yr, with a total flux of 1,832 × 10^6 kg/yr (1.832 Tg/yr). Sedimentation rates indicate that approximately 13% of the eroded carbon was sequestered in nearshore sediments, where the overwhelming majority of organic carbon was of terrestrial origin.

Description: Reading the sediment record in terms of past climates is challenging since linking climate change to the associated responses of sedimentary systems is not always straightforward. Here we analyze the erosional response of landscapes on the Tibetan Plateau to interglacial climate forcing. Using the theory of dynamical systems on Holocene time series of geochemical proxies, we derive a sedimentary response model that accurately simulates observed proxy variation in three lake records. The model suggests that millennial variations in sediment composition reflect a self-organization of landscapes in response to abrupt climate change between 11.6 and 11.9 ka BP. The self-organization is characterized by oscillations in sediment supply emerging from a feedback between physical and chemical erosion processes, with estimated response times between 3,000 to 18,000 years depending on catchment topography. The implications of our findings emphasize the need for landscape response models to decipher the paleoclimatic code in continental sediment records.

Description: River flooding is among the most destructive of natural hazards globally, causing widespread loss of life, damage to infrastructure and economic deprivation. Societies are currently under increasing threat from such floods, predominantly from increasing exposure of people and assets in flood‐prone areas, but also as a result of changes in flood magnitude, frequency, and timing. Accurate flood hazard and risk assessment are therefore crucial for the sustainable development of societies worldwide. With a paucity of hydrological measurements, evidence from the field offers the only insight into truly extreme events and their variability in space and time. Historical, botanical, and geological archives have increasingly been recognized as valuable sources of extreme flood event information. These different archives are here reviewed with a particular focus on the recording mechanisms of flood information, the historical development of the methodological approaches and the type of information that those archives can provide. These studies provide a wealthy dataset of hundreds of historical and palaeoflood series, whose analysis reveals a noticeable dominance of records in Europe. After describing the diversity of flood information provided by this dataset, we identify how these records have improved and could further improve flood hazard assessments and, thereby, flood management and mitigation plans.

Description: The global ocean contains a massive reservoir of dissolved organic carbon (DOC), rivaling the atmosphere's pool of CO2. The most recalcitrant fractions have mean radiocarbon ages of ~4,000 years in the Atlantic to ~6,000 years in the Pacific. Knowing the radiocarbon signatures of DOC and the molecular composition of dissolved organic matter (DOM) is crucial to develop understanding of the persistence and lifetime of the DOC pool. In this research, we collected samples from the deep North Pacific in August 2013 (aboard the RV Melville) to couple the Δ14C content of solid-phase-extracted DOM (Δ14C-SPE-DOM) with its molecular composition in the ocean's oldest deep waters. We find that deep waters in this region held a mean Δ14C-SPE-DOM value of −554 ± 9‰ (~6,400 14C years), substantially more depleted than that in the deep Atlantic, which held a mean Δ14C-SPE-DOM value of −445 ± 5‰. While we find a more degraded molecular composition of DOM in the deep Pacific than the deep Atlantic, the molecular formulae within the Island of Stability (Lechtenfeld et al., 2014, https://doi.org/10.1016/j.gca.2013.11.009), are largely retained. These results imply that a fraction of deep DOM is resistant to removal and present in both the deep Atlantic and Pacific Oceans.

Description: In situ observations of mid-ocean ridge spreading events are rare, and no observations exist at ultraslow spreading ridges. In 2013, two earthquake swarms and prominent, tidally modulated harmonic tremor were accidentally recorded by ocean bottom seismometers at the Southwest Indian Ridge. After relative relocation, the first swarm shows downward migrating hypocenters, while the second swarm immediately spreads over a steeply dipping plane originating at the same location as the first swarm. The tremor signal is temporally connected to the swarms and persists for more than 20 days after the second swarm. Polarization analysis points to two source locations above the seismically active area at 2- to 8-km depth. We interpret swarms and tremor as evidence for a dike intrusion event that caused disruption to an existent hydrothermal system. The tremor may be generated by enhanced hydrothermal circulation caused by the added heat of the intrusion with increased flow during low tides.

Description: With retreating sea ice and increasing human activities in the Arctic come a growing need for reliable sea ice forecasts up to months ahead. We exploit the subseasonal‐to‐seasonal prediction database and provide the first thorough assessment of the skill of operational forecast systems in predicting the location of the Arctic sea ice edge on these time scales. We find large differences in skill between the systems, with some showing a lack of predictive skill even at short weather time scales and the best producing skillful forecasts more than 1.5 months ahead. This highlights that the area of subseasonal prediction in the Arctic is in an early stage but also that the prospects are bright, especially for late summer forecasts. To fully exploit this potential, it is argued that it will be imperative to reduce systematic model errors and develop advanced data assimilation capacity.

Description: Semiautomated methods for microscopic image acquisition, image analysis, and taxonomic identification have repeatedly received attention in diatom analysis. Less well studied is the question whether and how such methods might prove useful for clarifying the delimitation of species that are difficult to separate for human taxonomists. To try to answer this question, three very similar Fragilariopsis species endemic to the Southern Ocean were targeted in this study: F. obliquecostata, F. ritscheri, and F. sublinearis. A set of 501 extended focus depth specimen images were obtained using a standardized, semiautomated microscopic procedure. Twelve diatomists independently identified these specimen images in order to reconcile taxonomic opinions and agree upon a taxonomic gold standard. Using image analyses, we then extracted morphometric features representing taxonomic characters of the target taxa. The discriminating ability of individual morphometric features was tested visually and statistically, and multivariate classification experiments were performed to test the agreement of the quantitatively defined taxa assignments with expert consensus opinion. Beyond an updated differential diagnosis of the studied taxa, our study also shows that automated imaging and image analysis procedures for diatoms are coming close to reaching a broad applicability for routine use.

Description: Our study followed the seasonal cycling of soluble (SFe), colloidal (CFe), dissolved (DFe), total dissolvable (TDFe), labile particulate (LPFe) and total particulate (TPFe) iron in the Celtic Sea (NE Atlantic Ocean). Preferential uptake of SFe occurred during the spring bloom, preceding the removal of CFe. Uptake and export of Fe during the spring bloom, coupled with a reduction in vertical exchange, led to Fe deplete surface waters (〈0.2 nM DFe; 0.11 nM LPFe, 0.45 nM TDFe, 1.84 nM TPFe) during summer stratification. Below the seasonal thermocline, DFe concentrations increased from spring to autumn, mirroring NO3- and consistent with supply from remineralised sinking organic material, and cycled independently of particulate Fe over seasonal timescales. These results demonstrate that summer Fe availability is comparable to the seasonally Fe limited Ross Sea shelf, and therefore is likely low enough to affect phytoplankton growth and species composition.

Description: In recent years, sea-ice conditions in the Arctic Ocean changed substantially toward a younger and thinner sea-ice cover. To capture the scope of these changes and identify the differences between individual regions, in situ observations from expeditions are a valuable data source. We present a continuous time series of in situ measurements from the N-ICE2015 expedition from January to June 2015 in the Arctic Basin north of Svalbard, comprising snow buoy and ice mass balance buoy data and local and regional data gained from electromagnetic induction (EM) surveys and snow probe measurements from four distinct drifts. The observed mean snow depth of 0.53 m for April to early June is 73% above the average value of 0.30 m from historical and recent observations in this region, covering the years 1955–2017. The modal total ice and snow thicknesses, of 1.6 and 1.7 m measured with ground-based EM and airborne EM measurements in April, May, and June 2015, respectively, lie below the values ranging from 1.8 to 2.7 m, reported in historical observations from the same region and time of year. The thick snow cover slows thermodynamic growth of the underlying sea ice. In combination with a thin sea-ice cover this leads to an imbalance between snow and ice thickness, which causes widespread negative freeboard with subsequent flooding and a potential for snow-ice formation. With certainty, 29% of randomly located drill holes on level ice had negative freeboard.

Description: Neurotoxins belonging to the group of saxitoxin (STX) and tetrodotoxin (TTX) analogs are guanidinium alkaloids that share a common high affinity and ion flux blockage capacity for voltage-gated sodium ion channels (Nav. Members of the STX group, also known as paralytic shellfish toxins (PST), are produced among three genera of marine dinoflagellate and several genera of phylogenetically distant and primarily freshwater filamentous cyanobacteria. The origin of the biosynthetic genes in dinoflagellates remains controversial and may represent single or multiple horizontal gene transfer (HGT) events from progenitor eubacteria and/or cyanobacteria. The TTXs occur primarily among marine puffer fish and a host of terrestrial amphibians. The biosynthetic pathway has not been completely elucidated and the origin of tetrodotoxicity,including the syndrome puffer fish poisoning (PFP) in human seafood consumers,remains somewhat enigmatic. Although symbiotic bacteria are most often invoked as the source of TTX in macrofauna, endogenous biosynthesis independent of bacteria cannot be excluded. Integration of knowledge on the biogenic origins, linked to heterogeneity of the biogeographical and phylogenetic distribution of these respective toxin groups, provides the basis for rational inferences and reasonable speculation about the functional role in aquatic and terrestrial ecosystems. Recent identification of the biosynthetic genes for STX analogs in both cyanobacteria and dinoflagellates has yielded insights into biosynthetic mechanisms of toxin heterogeneity among strains and the evolutionary origins of their respective elements of the toxin gene clusters. Although it is not fully understood how or why these molecules are produced in nature, development of improved detection methods will make possible the discovery of new sources and analogs. Once genetic mechanisms for toxin biosynthesis are fully incorporated with modeling of receptor binding interactions and the structural–functional affinities of the ion channels, this will facilitate further biotechnological exploitation of these exquisite bioactive compounds and point the way toward future development of pharmaceuticals and therapeutic applications.

Description: Freshwater bivalves of the order Unionoida display an uncommon phenotypic plasticity with high interpopulation and intrapopulation morphological variability, which could be advantageous for coping with habitat modifications. However, unionoids have suffered a marked population decline in different parts of the world in the last decades. A decline in some populations of the South American long‐lived freshwater mussel Diplodon chilensis as a consequence of habitat deterioration has recently been recorded. Ontogenetic allometry and shape variation in shells of D. chilensis from 2 different sites, Paimun lake and Chimehuin river, North Patagonia, Argentina, have been studied. For these purposes, geometric morphometric methods were used. Shell shape shows differences between sites, which the shells from Chimehuin river show less intrapopulation variability; are more elongated, with the anterior part extended upwards and the posterior part downwards; and show a steeper anterior curvature at the umbo compared to those from Paimún lake. These characteristics make shell shape more streamlined to withstand river current. Furthermore, the extended posterior‐ventral part in river shells coincides with higher foot weight that would improve anchoring to the river rocky–sandy substrate. River shells present a bounded eco‐morphotype whereas the higher variability of lake shells includes the “river eco‐morphotype.” Growth is allometric throughout life in both sites and is not sex‐dependent. The success of river repopulation programmes using mussels from lake populations may be increased by transplanting selected individuals that show “river eco‐morphotype.”

Description: Sea ice models with the traditional viscous-plastic (VP) rheology and very small horizontal grid spacing can resolve leads and deformation rates localized along Linear Kinematic Features (LKF). In a 1 km pan-Arctic sea ice-ocean simulation, the small-scale sea ice deformations are evaluated with a scaling analysis in relation to satellite observations of the Envisat Geophysical Processor System (EGPS) in the Central Arctic. A new coupled scaling analysis for data on Eulerian grids is used to determine the spatial and temporal scaling and the coupling between temporal and spatial scales. The spatial scaling of the modeled sea ice deformation implies multifractality. It is also coupled to temporal scales and varies realistically by region and season. The agreement of the spatial scaling with satellite observations challenges previous results with VP models at coarser resolution, which did not reproduce the observed scaling. The temporal scaling analysis shows that the VP model, as configured in this 1 km simulation, does not fully resolve the intermittency of sea ice deformation that is observed in satellite data.

Description: Marine-terminating outlet glaciers of the Greenland ice sheet make significant contributions to global sea level rise, yet the conditions that facilitate their fast flow remain poorly constrained owing to a paucity of data. We drilled and instrumented seven boreholes on Store Glacier, Greenland, to monitor subglacial water pressure, temperature, electrical conductivity and turbidity along with englacial ice temperature and deformation. These observations were supplemented by surface velocity and meteorological measurements to gain insight into the conditions and mechanisms of fast glacier flow. Located 30km from the calving front, each borehole drained rapidly on attaining ∼600m depth indicating a direct connection with an active subglacial hydrological system. Persistently high subglacial water pressures indicate low effective pressure (180 − 280 kPa), with small amplitude variations correlated with notable peaks in surface velocity driven by the diurnal melt cycle and longer periods of melt and rainfall. The englacial deformation profile determined from borehole tilt measurements indicates that 63-71% of total ice motion occurred at the bed, with the remaining 29-37% predominantly attributed to enhanced deformation in the lowermost 50-100 m of the ice column. We interpret this lowermost 100m to be formed of warmer, pre-Holocene ice overlying a thin (0 − 8 m) layer of temperate basal ice. Our observations are consistent with a spatially-extensive and persistently-inefficient subglacial drainage system that we hypothesize comprises drainage both at the ice-sediment interface and through subglacial sediments. This configuration has similarities to that interpreted beneath dynamically-analogous Antarctic ice streams, Alaskan tidewater glaciers, and glaciers in surge.

Description: Phytoplankton harvests light by integrating chlorophyll in protein‐pigment complexes (photosystems) that are variable in number and size. In ecosystem models, the capacity of light harvesting is described as the pool of chlorophyll. Since most of the variability in phytoplankton chlorophyll content is driven by acclimation to changing nutrient and light conditions, photoacclimation is generally parameterized as a regulation of chlorophyll synthesis with changing light. However, photosystems can also be degraded, and of the few process‐based models that have been proposed in the literature for the representation of their degradation and repair, none of them have been extended to more realistic conditions offered by pelagic biogeochemical models. We proposed three potential parameterizations to treat the degradation of photosystems as a function of light intensity and included them as a source of variation in the size of the chlorophyll pool in Regulated Ecosystem Model

Description: In this study we present dissolved and particulate 230Th and 232Th results, as well as particulate 234Th data, obtained as part of the GEOTRACES central Arctic Ocean sections GN04 (2015) and IPY11 (2007). Samples were analyzed following GEOTRACES methods, and compared to previous results from 1991. We observe significant decreases in 230Th concentrations in the deep waters of the Nansen Basin. We ascribe this non-steady state removal process to a variable release and scavenging of trace metals near an ultra-slow spreading ridge. This finding demonstrates that hydrothermal scavenging in the deep-sea may vary on annual time scales and highlights the importance of repeated GEOTRACES sections

Description: A reconstruction method was developed for hyperspectral remote sensing reflectance (Rrs)data in the visible domain (400–700 nm) based on in situ observations. A total of 2,647 Rrs spectra were collected over a wide variety of water environments including open ocean, coastal and inland waters. Ten schemes with different band numbers (6 to 15) were tested based on a nonlinear model. It was found that the accuracy of the reconstruction increased with the increase of input band numbers. Eight of these schemes met the accuracy criterion with the mean absolute error (MAE) and mean relative error (MRE)values between reconstructed and in situ Rrs less than 0.00025 sr-1 and 5%, respectively. We chose the eight-band scheme for further evaluation because of its decent performance. The results revealed that the parameterization derived by the eight-band scheme was efficient for restoring Rrs spectra from different water bodies. In contrast to the previous studies that used a linear model with 15 spectral bands, the nonlinear model with the eight-band scheme yielded a comparable reconstruction performance. The MAE andMRE values were generally less than 0.00016 sr-1 and 3% respectively; much lower than the uncertainties in satellite-derived Rrs products. Furthermore, a preliminary experiment of this method on the data from the Hyperspectral Imager for the Coastal Ocean (HICO) showed high potential in the future applications for reconstructing Rrs spectra from space-borne optical sensors. Overall, the eight-band scheme with our non-linear model was proven to be optimal for hyperspectral Rrs reconstruction in the visible domain.

Description: Northwestern Namibia, at the landfall of the Walvis Ridge, was affected by the Tristan da Cunha mantle plume during continental rupture between Africa and South America, as evidenced by the presence of the Etendeka continental flood basalts. Here we use data from a passive-source seismological network to investigate the upper mantle structure and to elucidate the Cretaceous mantle plume-lithosphere interaction. Receiver functions reveal an interface associated with a negative velocity contrast within the lithosphere at an average depth of 80 km. We interpret this interface as the relic of the lithosphereasthenosphere boundary (LAB) formed during the Mesozoic by interaction of the Tristan da Cunha plume head with the pre-existing lithosphere. The velocity contrast might be explained by stagnated and ‘‘frozen’’ melts beneath an intensively depleted and dehydrated peridotitic mantle. The present-day LAB is poorly visible with converted waves, indicating a gradual impedance contrast. Beneath much of the study area, converted phases of the 410 and 660 km mantle transition zone discontinuities arrive 1.5 s earlier than in the landward plume-unaffected continental interior, suggesting high velocities in the upper mantle caused by a thick lithosphere. This indicates that after lithospheric thinning during continental breakup, the lithosphere has increased in thickness during the last 132 Myr. Thermal cooling of the continental lithosphere alone cannot produce the lithospheric thickness required here. We propose that the remnant plume material, which has a higher seismic velocity than the ambient mantle due to melt depletion and dehydration, significantly contributed to the thickening of the mantle lithosphere.

Description: Snow on sea ice alters the properties of the underlying ice cover as well as associated physical and biological processes at the interfaces between atmosphere, sea ice, and ocean. The Antarctic snow cover persists during most of the year and contributes significantly to the sea-ice mass due to the widespread surface flooding and related snow-ice formation. Snow also enhances the sea-ice surface reflectivity of incoming shortwave radiation and determines therefore the amount of light being reflected, absorbed, and transmitted to the upper ocean. Here, we present results of a case study of spectral solar radiation measurements under Antarctic pack ice with an instrumented Remotely Operated Vehicle in the Weddell Sea in 2013. In order to identify the key variables controlling the spatial distribution of the under-ice light regime, we exploit under-ice optical measurements in combination with simultaneous characterization of surface properties, such as sea-ice thickness and snow depth. Our results reveal that the distribution of flooded and nonflooded sea-ice areas dominates the spatial scales of under-ice light variability for areas smaller than 100 m-by-100 m. However, the heterogeneous and highly metamorphous snow on Antarctic pack ice obscures a direct correlation between the under-ice light field and snow depth. Compared to the Arctic, light levels under Antarctic pack ice are extremely low during spring (〈0.1%). This is mostly a result of the distinctly different dominant sea ice and snow properties with seasonal snow cover (including strong surface melt and summer melt ponds) in the Arctic and a year-round snow cover and widespread surface flooding in the Southern Ocean.

Description: Snow thickness on sea ice is a largely under-sampled parameter, yet of importance for the sea-ice mass balance and for satellite based sea-ice thickness estimates and thus our general understanding of global ice-volume change. Traditional direct thickness measurements with meter sticks can provide accurate but only spot information, referred to as "needles" due to their pinpoint focus and information while airborne and satellite remote sensing snow products, referred to as "the haystack" have large uncertainties due to their scale. We demonstrate the remarkable accuracy and applicability of ground penetrating radar (GPR) snow-thickness measurements by comparing them with in-situ, meter-stick data from two field campaigns to Antarctica in late winter/early spring. The efficiency and millimeter- to centimeter accuracy of GPR enables practitioners to acquire extensive, semi-regional data with the potential to upscale "needles" to "the haystack" and to potentially calibrate satellite remote sensing products that we confirm to derive roughly 30 % of the in-situ thickness. We find the radar wave propagation velocity in snow to be rather constant (+/- 6%), encouraging regional snow-thickness surveys. Snow thinner than 10 cm is under the detection limit with the off-the-shelf GPR setup utilized in our study.

Description: New two-year long records from three moorings, located at 76°S along the eastern flank and shelf of the Filchner Trough, give insight in the seasonal cycle of hydrography to a region where Modified Warm Deep Water (MWDW) enters the southern Weddell Sea continental shelf, possibly reaching the Filchner Ronne Ice Shelf, the biggest ice shelf (by volume) in Antarctica. A persistent northward flow of Ice Shelf Water (ISW) is found along the slope of the trough at 600 m depth, while the data on the shelf indicate a seasonal cycle, characterized by four phases. A distinct warm inflow period (separated in two phases), with maximum temperatures of −1°C, appears to be related to the seasonal heaving of the Antarctic Slope Front thermocline along the continental shelf break further north and a seasonal extension of the ISW layer onto the Eastern Shelf. The density gradients between the ISW in the trough and the MWDW on the adjacent shelf drive the southward flow during these phases. A flow reversal is found in winter, ceasing the southward flow along the eastern flank of the trough. Weaker density gradients between the trough and the shelf during winter allow a westward flow, partly driven by a N-S density gradient, existing across the Eastern Shelf during this time. From spring through to summer the ISW layer in the trough extends onto the eastern shelf where it occupies the bottom layer at our moorings and it is associated with northward flow.

Description: Some researchers view radon emissions as a precursor to earthquakes, especially those of high magnitude [e.g., Wang et al., 2014; Lombardi and Voltattorni, 2010], but the debate in the scientific community about the applicability of the gas to surveillance systems remains open. Yet radon “works” at Italy’s Mount Etna, one of the world’s most active volcanoes, although not specifically as a precursor to earthquakes. In a broader sense, this naturally radioactive gas from the decay of uranium in the soil, which has been analyzed at Etna in the past few years, acts as a tracer of eruptive activity and also, in some cases, of seismic–tectonic phenomena. To deepen the understanding of tectonic and eruptive phenomena at Etna, scientists analyzed radon escaping from the ground and compared those data with measurements gathered continuously by instrumental networks on the volcano. Here Etna is a boon to scientists—it’s traced by roads, making it easy to access for scientific observation. Dense monitoring networks, managed by the Istituto Nazionale di Geofisica e Vulcanologia, Catania–Osservatorio Etneo (INGV-OE), have been continuously observing the volcano for more than 40 years. This continuous dense monitoring made the volcano the perfect open-air laboratory for deciphering how eruptive activity may influence radon emissions.

Description: This work was supported by the Mediterranean Supersite Volcanoes (MED-SUV) project, which has received funding from the European Union’s Seventh Framework Programme for research, technological development, and demonstration under grant agreement 308665.

Description: Published

Description: 7

Description: 4V. Processi pre-eruttivi

Description: N/A or not JCR

Description: Archaeological excavations over the last 40 years in Campania (southern Italy) confirm intense human occupation since the early Bronze Age (EBA). A pedological analysis of a ∼9 m deep pedos-tratigraphic sequence at Palma Campania (Naples) provides insights into fertility, rates of soil formation, and environmental conditions over the past 10 kyr. Fourteen volcanic soils formed in parent materials from Vesuvius and Campi Flegrei volcanic eruptions were analyzed. Results show that soils differ markedly in terms of thickness, andic properties, chemical fertility, and degree of development. Chemical properties, along with specific soil micromorphological features (such as silt coatings, laminar structure, iron segregations), are interpreted in terms of pedogenetic pro-cesses and used to reconstruct past environmental conditions. The degree of soil development, evaluated on the basis of organic matter content and some andic properties, proved more indica-tive of climate and geomorphological stability than duration of pedogenesis. Since the excavation also revealed an extensive EBA paleosurface and soil, targeted analyses were carried out to gain a better understanding of the impact of human activities and domestic animals on soil properties.

Description: Published

Description: 193-217

Description: 1VV. Altro

Description: JCR Journal

Description: Thermokarst lakes are prevalent in Arctic coastal lowland regions and sublake permafrost degradation and talik development contributes to greenhouse gas emissions by tapping the large permafrost carbon pool. Whereas lateral thermokarst lake expansion is readily apparent through remote sensing and shoreline measurements, sublake thawed sediment conditions and talik growth are difficult to measure. Here we combine transient electromagnetic surveys with thermal modeling, backed up by measured permafrost properties and radiocarbon ages, to reveal closed‐talik geometry associated with a thermokarst lake in continuous permafrost. To improve access to talik geometry data, we conducted surveys along three transient electromagnetic transects perpendicular to lakeshores with different decadal‐scale expansion rates of 0.16, 0.38, and 0.58 m/year. We modeled thermal development of the talik using boundary conditions based on field data from the lake, surrounding permafrost and a borehole, independent of the transient electromagnetics. A talik depth of 91 m was determined from analysis of the transient electromagnetic surveys. Using a lake initiation age of 1400 years before present and available subsurface properties the results from thermal modeling of the lake center arrived at a best estimate talk depth of 80 m, which is on the same order of magnitude as the results from the transient electromagnetic survey. Our approach has provided a noninvasive estimate of talik geometry suitable for comparable settings throughout circum‐Arctic coastal lowland regions.

Description: The classic scenario for the generation of Dansgaard-Oeschger (DO) events assumes a link to changes in the Atlantic Meridional Overturning Circulation (AMOC) induced by North Atlantic freshwater perturbations. Recent proxy data emphasize the existence of leads and lags between DO fingerprints in Greenland and Antarctic records, highlighting the potential of a Southern Hemisphere control on these events. Investigating this possibility, we provide a conceptual model resulting from phase space reconstructions based on the northern and southern ice core records. The resulting patterns closely resemble AMOC hysteresis, consistent with a northern abrupt warming linked to gradual global temperature changes. This suggests that rapid DO warmings associated with abrupt AMOC transitions from a relatively weak (cold stadial) state to a stronger (warm inter-stadial) state can be controlled by global forcing that can be linked to the Southern Hemisphere, rather than by the end of a local temporary forcing in the North Atlantic.

Description: In the African – Southern Ocean gateway several water masses originating in the Atlantic, Indian and Southern oceans meet and mix. As a consequence, the gateway is crucial for the maintenance of the global thermohaline circulation. Newly acquired multichannel seismic reflection data collected across the southern Mozambique Ridge are used to reconstruct the impact of paleoceanographic modifications on the Neogene and Quaternary circulation in the northeastern African – Southern Ocean gateway. The data show the occurrence of mid-Miocene (~15 Ma) to early Pliocene (~5 Ma) contourite drifts and erosional features interpreted as evidence for the onset of current-controlled sedimentation in the late Neogene resulting from mid-Miocene cooling and closure of the Indonesian gateway. The Quaternary is characterized by a relocation of Antarctic Bottom Water inflow and the inception of two branches of North Atlantic Deep Water circulation subsequent to the final closure of the Central American Seaway and the Northern Hemisphere Glaciation. Therefore, the two events triggered the onset of unhindered deep and bottom water circulation from the Atlantic into the Indian Ocean, whereas Antarctic Intermediate Water circulation decreased due to the final closure of the Indonesian gateway. Our results show that tectonic and climatic events, which themselves may be linked, continuously modified the Cenozoic paleoceanic circulation in the African – Southern Ocean gateway, and indicate that ocean gateways governing the global water mass exchange act as an excellent location to reconstruct such modifications based on the interpretationof contourite drifts and erosional features.

Description: Recovery Glacier reaches far into the East Antarctic Ice Sheet. Recent projections point out that its dynamic behavior has a considerable impact on future Antarctic ice loss (Golledge et al., 2017, https://doi.org/10.1002/2016GL072422). Subglacial lakes are thought to play a major role in the initiation of the rapid ice flow (Bell et al., 2007, https://doi.org/10.1038/nature05554). Satellite altimetry observations have even suggested several actively filling and draining subglacial lakes beneath the main trunk (B. E. Smith et al., 2009, https://doi.org/10.3189/002214309789470879). We present new data of the geometry of this glacier and investigate its basal properties employing radio-echo sounding. Using ice sheet modeling, we were able to constrain estimates of radar absorption in the ice, but uncertainties remain large. The magnitude of the basal reflection coefficient is thus still poorly known. However, its spatial variability, in conjunction with additional indicators, can be used to infer the presence of subglacial water. We find no clear evidence of water at most of the previously proposed lake sites. Especially, locations, where altimetry detected active lakes, do not exhibit lake characteristics in radio-echo sounding. We argue that lakes far upstream the main trunk are not triggering enhanced ice flow, which is also supported by modeled subglacial hydrology.

Description: The Norwegian young sea ICE (N-ICE2015) expedition was designed to investigate the atmosphere-snow-ice-ocean interactions in the young and thin sea ice regime north of Svalbard. Radiosondes were launched twice daily during the expedition from January to June 2015. Here we use these upper air measurements to study the multiple cyclonic events observed during N-ICE2015 with respect to changes in the vertical thermodynamic structure, moisture content, and boundary layer characteristics. We provide statistics of temperature inversion characteristics, static stability, and boundary layer extent. During winter, when radiative cooling is most effective, we find the strongest impact of synoptic cyclones. Changes to thermodynamic characteristics of the boundary layer are associated with transitions between the radiatively “clear” and “opaque” atmospheric states. In spring, radiative fluxes warm the surface leading to lifted temperature inversions and a statically unstable boundary layer. Further, we compare the N-ICE2015 static stability distributions to corresponding profiles from ERA-Interim reanalysis, from the closest land station in the Arctic North Atlantic sector, Ny-Ålesund, and to soundings from the SHEBA expedition (1997/1998). We find similar stability characteristics for N-ICE2015 and SHEBA throughout the troposphere, despite differences in location, sea ice thickness, and snow cover. For Ny-Ålesund, we observe similar characteristics above 1000 m, while the topography and ice-free fjord surrounding Ny-Ålesund generate great differences below. The long-term radiosonde record (1993–2014) from Ny-Ålesund indicates that during the N-ICE2015 spring period, temperatures were close to the climatological mean, while the lowest 3000 m were 1–3∘C warmer than the climatology during winter.

Description: Focused research on the Pine Island and Thwaites glaciers, which drain the West Antarctic Ice Shelf (WAIS) into the Amundsen Sea Embayment (ASE), revealed strong signs of instability in recent decades that result from variety of reasons, such as inflow of warmer ocean currents and reverse bedrock topogra- phy, and has been established as the Marine Ice Sheet Instability hypothesis. Geothermal heat flux (GHF) is a poorly constrained parameter in Antarctica and suspected to affect basal conditions of ice sheets, i.e., basal melting and subglacial hydrology. Thermomechanical models demonstrate the influential boundary condition of geothermal heat flux for (paleo) ice sheet stability. Due to a complex tectonic and magmatic history of West Antarctica, the region is suspected to exhibit strong heterogeneous geothermal heat flux variations. We present an approach to investigate ranges of realistic heat fluxes in the ASE by different methods, discuss direct observations, and 3-D numerical models that incorporate boundary conditions derived from various geophysical studies, including our new Depth to the Bottom of the Magnetic Source (DBMS) estimates. Our in situ temperature measurements at 26 sites in the ASE more than triples the number of direct GHF observations in West Antarctica. We demonstrate by our numerical 3-D models that GHF spatially varies from 68 up to 110 mW m-2.

Description: The Barents Sea is one of the fastest changing regions of the Arctic, and has experienced the strongest decline in winter-time sea-ice area in the Arctic, at -23 +/- 4% per decade. Sea-ice thickness in the Barents Sea is not well studied. We present two previously unpublished helicopter-borne electromagnetic (HEM) ice thickness measurements from the northwestern Barents Sea acquired in March 2003 and 2014. The HEM data are compared to ice thickness calculated from ice draft measured by ULS deployed between 1994 and 1996. These data show that ice thickness varies greatly from year to year; influenced by the thermodynamic and dynamic processes that govern local formation vs long-range advection. In a year with a large inflow of sea-ice from the Arctic Basin, the Barents Sea ice cover is dominated by thick multiyear ice; as was the case in 2003 and 1995. In a year with an ice cover that was mainly grown in situ, the ice will be thin and mechanically unstable; as was the case in 2014. The HEM data allow us to explore the spatial and temporal variability in ice thickness. In 2003 the dominant ice class was more than 2 years old; and modal sea-ice thickness varied regionally from 0.6 to 1.4 m, with the thinner ice being either first-year ice, or multiyear ice which had come into contact with warm Atlantic water. In 2014 the ice cover was predominantly locally grown ice less than 1 month old (regional modes of 0.5–0.8 m). These two situations represent two extremes of a range of possible ice thickness distributions that can present very different conditions for shipping traffic; or have a different impact on heat transport from ocean to atmosphere.

Description: Antarctic pack ice serves as habitat for microalgae which contribute to Southern Ocean primary production and serve as important food source for pelagic herbivores. Ice algal biomass is highly patchy and remains severely undersampled by classical methods such as spatially restricted ice coring surveys. Here we provide an unprecedented view of ice algal biomass distribution, mapped (as chlorophyll a) in a 100 m by 100 m area of a Weddell Sea pack ice floe, using under-ice irradiance measurements taken with an instrumented remotely operated vehicle. We identified significant correlations (p 〈 0.001) between algal biomass and concomitant in situ surface measurements of snow depth, ice thickness, and estimated sea ice freeboard levels using a statistical model. The model’s explanatory power (r2 = 0.30) indicates that these parameters alone may provide a first basis for spatial prediction of ice algal biomass, but parameterization of additional determinants is needed to inform more robust upscaling efforts.

Description: The global ocean state for the modern age and for the Last Glacial Maximum (LGM) was dynamically reconstructed with a sophisticated data assimilation technique. A substantial amount of data including global seawater temperature, salinity (only for the modern estimate), and the isotopic composition of oxygen and carbon (only in the Atlantic for the LGM) were integrated into an ocean general circulation model with the help of the adjoint method, thereby the model was optimized to reconstruct plausible continuous fields of tracers, overturning circulation and water mass distribution. The adjoint-based LGM state estimation of this study represents the state of the art in terms of the length of forward model runs, the number of observations assimilated, and the model domain. Compared to the modern state, the reconstructed continuous sea-surface temperature field for the LGM shows a global-mean cooling of 2.2 K, and the reconstructed LGM ocean has a more vigorous Atlantic meridional overturning circulation, shallower North Atlantic Deep Water (NADW) equivalent, stronger stratification, and more saline deep water.

Description: Nioghalvfjerdsfjorden Glacier (79NG) is the largest of three marine-terminating outlet glaciers draining the Northeast Greenland Ice Stream. To understand how Atlantic waters supply waters in the cavity beneath the floating 79NG, we analyze historic and recent bathymetric, hydrographic, and velocity observations obtained on the Northeast Greenland continental shelf. The bathymetry is characterized by a trough system, consisting of the Westwind Trough and the Norske Trough in the northern and southern part of the continental shelf, respectively. Atlantic waters recirculating in Fram Strait cross the shelf break and enter the trough system at its southeastern inlet toward the inner shelf. Warm Atlantic Intermediate Water (AIW) present below 200 m in the Norske Trough shows large contributions of the recirculating Atlantic water. We found that the bathymetry is sufficiently deep to provide a direct subsurface pathway for warm AIW between the shelf break and the 79NG cavity via the Norske Trough. Likewise, based on the hydrographic data, we show that the Norske Trough supplies AIW warmer than 1°C to the 79NG, which is not present in the Westwind Trough. Our moored and lowered velocity measurements indicate that a boundary current carries warm AIW along the northeastern slope of Norske Trough toward the 79NG. We suggest that anomalies in Atlantic water temperatures in Fram Strait could reach 79NG within less than 1.5 years, thereby modifying the glacier's basal melt rates.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 90, doi:10.3389/fmars.2018.00090.

Description: Sea turtles inhabiting coastal environments routinely encounter anthropogenic hazards, including fisheries, vessel traffic, pollution, dredging, and drilling. To support mitigation of potential threats, it is important to understand fine-scale sea turtle behaviors in a variety of habitats. Recent advancements in autonomous underwater vehicles (AUVs) now make it possible to directly observe and study the subsurface behaviors and habitats of marine megafauna, including sea turtles. Here, we describe a “smart” AUV capability developed to study free-swimming marine animals, and demonstrate the utility of this technology in a pilot study investigating the behaviors and habitat of leatherback turtles (Dermochelys coriacea). We used a Remote Environmental Monitoring UnitS (REMUS-100) AUV, designated “TurtleCam,” that was modified to locate, follow and film tagged turtles for up to 8 h while simultaneously collecting environmental data. The TurtleCam system consists of a 100-m depth rated vehicle outfitted with a circular Ultra-Short BaseLine receiver array for omni-directional tracking of a tagged animal via a custom transponder tag that we attached to the turtle with two suction cups. The AUV collects video with six high-definition cameras (five mounted in the vehicle nose and one mounted aft) and we added a camera to the animal-borne transponder tag to record behavior from the turtle's perspective. Since behavior is likely a response to habitat factors, we collected concurrent in situ oceanographic data (bathymetry, temperature, salinity, chlorophyll-a, turbidity, currents) along the turtle's track. We tested the TurtleCam system during 2016 and 2017 in a densely populated coastal region off Cape Cod, Massachusetts, USA, where foraging leatherbacks overlap with fixed fishing gear and concentrated commercial and recreational vessel traffic. Here we present example data from one leatherback turtle to demonstrate the utility of TurtleCam. The concurrent video, localization, depth and environmental data allowed us to characterize leatherback diving behavior, foraging ecology, and habitat use, and to assess how turtle behavior mediates risk to impacts from anthropogenic activities. Our study demonstrates that an AUV can successfully track and image leatherback turtles feeding in a coastal environment, resulting in novel observations of three-dimensional subsurface behaviors and habitat use, with implications for sea turtle management and conservation.

Description: This research was funded by National Oceanic and Atmospheric Administration Grant #NA16NMF4720074 to the Massachusetts Division of Marine Fisheries under the Species Recovery Grants to States program. Additional funding was provided by Jean Tempel, Hydroid Inc., and over 100 Project WHOI donors.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 241, doi:10.3389/fmars.2018.00241.

Description: Cryptophyte algae are globally distributed photosynthetic flagellates found in freshwater, estuarine, and neritic ecosystems. While cryptophytes can be highly abundant and are consumed by a wide variety of protistan predators, few studies have sought to quantify in situ grazing rates on their populations. Here we show that autumnal grazing rates on in situ communities of cryptophyte algae in Chesapeake Bay are high throughout the system, while growth rates, particularly in the lower bay, were low. Analysis of the genetic diversity of cryptophyte populations within dilution experiments suggests that microzooplankton may be selectively grazing the fastest-growing members of the population, which were generally Teleaulax spp. We also demonstrate that potential grazing rates of ciliates and dinoflagellates on fluorescently labeled (FL) Rhodomonas salina, Storeatula major, and Teleaulax amphioxeia can be high (up to 149 prey predator−1 d−1), and that a Gyrodinium sp. and Mesodinium rubrum could be selective grazers. Potential grazing was highest for heterotrophic dinoflagellates, but due to its abundance, M. rubrum also had a high overall impact. This study reveals that cryptophyte algae in Chesapeake Bay can experience extremely high grazing pressure from phagotrophic protists, and that this grazing likely shapes their community diversity.

Description: The authors thank the National Science Foundation (OCE 1031718 and 1436169) for providing support for this research.

Description: The Central Yakutian permafrost landscape is rapidly being modified by land use and global warming, but small-scale thermokarst process variability and hydrological conditions are poorly understood. We analyze lake-area changes and thaw subsidence of young thermokarst lakes on ice-complex deposits (yedoma lakes) in comparison to residual lakes in alas basins during the last 70 years for a local study site and we record regional lake size and distribution on different ice-rich permafrost terraces using satellite and historical airborne imagery. Statistical analysis of climatic and ground-temperature data identified driving factors of yedoma- and alas-lake changes. Overall, lake area is larger today than in 1944 but alas-lake levels have oscillated greatly over 70 years, with a mean alas-lake-radius change rate of 1.663.0 m/yr. Anthropogenic disturbance and forest degradation initiated, and climate forced rapid, continuous yedoma-lake growth. The mean yedoma lake-radius change rate equals 1.261.0 m/yr over the whole observation period. Mean thaw subsidence below yedoma lakes is 6.261.4 cm/yr. Multiple regression analysis suggests that winter precipitation, winter temperature, and active-layer properties are primary controllers of area changes in both lake types; summer weather and permafrost conditions additionally influence yedoma-lake growth rates. The main controlling factors of alas-lake changes are unclear due to larger catchment areas and subsurface hydrological conditions. Increasing thermokarst activity is currently linked to older terraces with higher ground-ice contents, but thermokarst activity will likely stay high and wet conditions will persist within the near future in Central Yakutian alas basins.

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 882, doi:10.3389/fmicb.2017.00882.

Description: Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ∼675 km of the lower Amazon River mainstem, in the Tapajós River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2–2.0 μm and 〉2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity near-shore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.

Description: This research is funded by the Gordon and Betty Moore Foundation (GBMF 2293 and 2928), the U.S. National Science Foundation (OCE-0934095, OCE-0424602, DEB-1256724), and the São Paulo Research Foundation (FAPESP 12/51187-0).

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 1496, doi:10.3389/fmicb.2017.01496.

Description: Synechococcus are ubiquitous and cosmopolitan cyanobacteria that play important roles in global productivity and biogeochemical cycles. This study investigated the fine scale microdiversity, seasonal patterns, and spatial distributions of Synechococcus in estuarine waters of Little Sippewissett salt marsh (LSM) on Cape Cod, MA. The proportion of Synechococcus reads was higher in the summer than winter, and higher in coastal waters than within the estuary. Variations in the V4–V6 region of the bacterial 16S rRNA gene revealed 12 unique Synechococcus oligotypes. Two distinct communities emerged in early and late summer, each comprising a different set of statistically co-occurring Synechococcus oligotypes from different clades. The early summer community included clades I and IV, which correlated with lower temperature and higher dissolved oxygen levels. The late summer community included clades CB5, I, IV, and VI, which correlated with higher temperatures and higher salinity levels. Four rare oligotypes occurred in the late summer community, and their relative abundances more strongly correlated with high salinity than did other co-occurring oligotypes. The analysis revealed that multiple, closely related oligotypes comprised certain abundant clades (e.g., clade 1 in the early summer and clade CB5 in the late summer), but the correlations between these oligotypes varied from pair to pair, suggesting they had slightly different niches despite being closely related at the clade level. Lack of tidal water exchange between sampling stations gave rise to a unique oligotype not abundant at other locations in the estuary, suggesting physical isolation plays a role in generating additional microdiversity within the community. Together, these results contribute to our understanding of the environmental and ecological factors that influence patterns of Synechococcus microbial community composition over space and time in salt marsh estuarine waters.

Description: This work was supported through a subcontract from the Woods Hole Center for Oceans and Human Health, from the National Institutes of Health and the National Science Foundation (NIH/NIEHS 1 P50 ES012742-01 and NSF/OCE 0430724), a National Research Council Research Associateship Award and L'Oreal USA Fellowship (JH), an Alfred P. Sloan Research Fellowship in Ocean Sciences and the Clare Boothe Luce Program (KM), NASA Astrobiology Institute Cooperative Agreement NNA04CC04A (MS), the Alfred P. Sloan Foundation's ICoMM field project, and the W. M. Keck Foundation.

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 337, doi:10.3389/fmars.2017.00337.

Description: The fishery for American lobster is currently the highest-valued commercial fishery in the United States, worth over US$620 million in dockside value in 2015. During a marine heat wave in 2012, the fishery was disrupted by the early warming of spring ocean temperatures and subsequent influx of lobster landings. This situation resulted in a price collapse, as the supply chain was not prepared for the early and abundant landings of lobsters. Motivated by this series of events, we have developed a forecast of when the Maine (USA) lobster fishery will shift into its high volume summer landings period. The forecast uses a regression approach to relate spring ocean temperatures derived from four NERACOOS buoys along the coast of Maine to the start day of the high landings period of the fishery. Tested against conditions in past years, the forecast is able to predict the start day to within 1 week of the actual start, and the forecast can be issued 3–4 months prior to the onset of the high-landings period, providing valuable lead-time for the fishery and its associated supply chain to prepare for the upcoming season. Forecast results are conveyed in a probabilistic manner and are updated weekly over a 6-week forecasting period so that users can assess the certainty and consistency of the forecast and factor the uncertainty into their use of the information in a given year. By focusing on the timing of events, this type of seasonal forecast provides climate-relevant information to users at time scales that are meaningful for operational decisions. As climate change alters seasonal phenology and reduces the reliability of past experience as a guide for future expectations, this type of forecast can enable fishing industry participants to better adjust to and prepare for operating in the context of climate change.

Description: This forecast was initiated with support from NSF Coastal SEES (OCE 1325484) and was developed with funds from NASA EPSCoR through Maine Space Grant Consortium (EP-15-03).

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 168, doi:10.3389/fmars.2018.00168.

Description: North Atlantic right whales (Eubalaena glacialis) are highly endangered and frequently exposed to a myriad of human activities and stressors in their industrialized habitat. Entanglements in fixed fishing gear represent a particularly pervasive and often drawn-out source of anthropogenic morbidity and mortality to the species. To better understand both the physiological response to entanglement, and to determine fundamental parameters such as acquisition, duration, and severity of entanglement, we measured a suite of biogeochemical markers in the baleen of an adult female that died from a well-documented chronic entanglement in 2005 (whale Eg2301). Steroid hormones (cortisol, corticosterone, estradiol, and progesterone), thyroid hormones (triiodothyronine (T3) and thyroxine (T4)), and stable isotopes (δ13C and δ15N) were all measured in a longitudinally sampled baleen plate. This yielded an 8-year profile of foraging and migration behavior, stress response, and reproduction. Stable isotopes cycled in annual patterns that reflect the animal's north-south migration behavior and seasonally abundant zooplankton diet. A progesterone peak, lasting approximately 23 months, was associated with the single known calving event (in 2002) for this female. Estradiol, cortisol, corticosterone, T3, and T4 were also elevated, although variably so, during the progesterone peak. This whale was initially sighted with a fishing gear entanglement in September 2004, but the hormone panel suggests that the animal first interacted with the gear as early as June 2004. Elevated δ15N, T3, and T4 indicate that Eg2301 potentially experienced increased energy expenditure, significant lipid catabolism, and thermal stress approximately 3 months before the initial sighting with fishing gear. All hormones in the panel (except cortisol) were elevated above baseline by September 2004. This novel study illustrates the value of using baleen to reconstruct recent temporal profiles and as a comparative matrix in which key physiological indicators of individual whales can be used to understand the impacts of anthropogenic activity on threatened whale populations.

Description: The Woods Hole Oceanographic Institution's Ocean Life Institute and Marine Mammal Center funded this study and NL was supported by a Postdoctoral Fellowship from Baylor University.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 772, doi:10.3389/fmicb.2018.00772.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 25, doi:10.3389/fmars.2018.00025.

Description: Basking shark (Cetorhinus maximus) populations are considered “vulnerable” globally and “endangered” in the northeast Atlantic by the International Union for the Conservation of Nature (IUCN). Much of our knowledge of this species comes from surface observations in coastal waters, yet recent evidence suggests the majority of their lives may be spent in the deep ocean. Depth preferences of basking sharks have significantly limited movement studies that used pop-up satellite archival transmitting (PSAT) tags as conventional light-based geolocation is impossible for tagged animals that spend significant time below the photic zone. We tagged 57 basking sharks with PSAT tags in the NW Atlantic from 2004 to 2011. Many individuals spent several months at meso- and bathy-pelagic depths where accurate light-level geolocation was impossible during fall, winter and spring. We applied a newly-developed geolocation approach for the PSAT data by comparing three-dimensional depth-temperature profile data recorded by the tags to modeled in situ oceanographic data from the high-resolution HYbrid Coordinate Ocean Model (HYCOM). Observation-based likelihoods were leveraged within a state-space hidden Markov model (HMM). The combined tracks revealed that basking sharks moved from waters around Cape Cod, MA to as far as the SE coast of Brazil (20°S), a total distance of over 17,000 km. Moreover, 59% of tagged individuals with sufficient deployment durations (〉250 days) demonstrated seasonal fidelity to Cape Cod and the Gulf of Maine, with one individual returning to within 60 km of its tagging location 1 year later. Tagged sharks spent most of their time at epipelagic depths during summer months around Cape Cod and in the Gulf of Maine. During winter months, sharks spent extended periods at depths of at least 600 m while moving south to the Sargasso Sea, the Caribbean Sea, or the western tropical Atlantic. Our work demonstrates the utility of applying advances in oceanographic modeling to understanding habitat use of highly migratory, often meso- and bathy-pelagic, ocean megafauna. The large-scale movement patterns of tagged sharks highlight the need for international cooperation when designing and implementing conservation strategies to ensure that the species recovers from the historical effects of over-fishing throughout the North Atlantic Ocean.

Description: We gratefully acknowledge funding from the US National Science Foundation (OCE 0825148), the National Aeronautics and Space Administration (NNS06AA96G), the Massachusetts Environmental Trust, and the Federal Aid in Sport Fish Restoration Program. CB was funded by the Martin Family Society of Fellows for Sustainability Fellowship at the Massachusetts Institute of Technology, the Grassle Fellowship and Ocean Venture Fund at the Woods Hole Oceanographic Institution, and the NASA Earth and Space Science Fellowship. Funding for the development of HYCOM has been provided by the National Ocean Partnership Program and the Office of Naval Research.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 840, doi:10.3389/fmicb.2018.00840.

Description: Earth’s subsurface environment is one of the largest, yet least studied, biomes on Earth, and many questions remain regarding what microorganisms are indigenous to the subsurface. Through the activity of the Census of Deep Life (CoDL) and the Deep Carbon Observatory, an open access 16S ribosomal RNA gene sequence database from diverse subsurface environments has been compiled. However, due to low quantities of biomass in the deep subsurface, the potential for incorporation of contaminants from reagents used during sample collection, processing, and/or sequencing is high. Thus, to understand the ecology of subsurface microorganisms (i.e., the distribution, richness, or survival), it is necessary to minimize, identify, and remove contaminant sequences that will skew the relative abundances of all taxa in the sample. In this meta-analysis, we identify putative contaminants associated with the CoDL dataset, recommend best practices for removing contaminants from samples, and propose a series of best practices for subsurface microbiology sampling. The most abundant putative contaminant genera observed, independent of evenness across samples, were Propionibacterium, Aquabacterium, Ralstonia, and Acinetobacter. While the top five most frequently observed genera were Pseudomonas, Propionibacterium, Acinetobacter, Ralstonia, and Sphingomonas. The majority of the most frequently observed genera (high evenness) were associated with reagent or potential human contamination. Additionally, in DNA extraction blanks, we observed potential archaeal contaminants, including methanogens, which have not been discussed in previous contamination studies. Such contaminants would directly affect the interpretation of subsurface molecular studies, as methanogenesis is an important subsurface biogeochemical process. Utilizing previously identified contaminant genera, we found that ∼27% of the total dataset were identified as contaminant sequences that likely originate from DNA extraction and DNA cleanup methods. Thus, controls must be taken at every step of the collection and processing procedure when working with low biomass environments such as, but not limited to, portions of Earth’s deep subsurface. Taken together, we stress that the CoDL dataset is an incredible resource for the broader research community interested in subsurface life, and steps to remove contamination derived sequences must be taken prior to using this dataset.

Description: We wish to acknowledge the support of the Sloan Foundation and the Deep Carbon Observatory and the Department of Energy, Office of Fossil Energy (Colwell).

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Earth Science 6 (2018): 147, doi:10.3389/feart.2018.00147.

Description: Silicic effusive eruptions in deep submarine environments have not yet been directly observed and very few modern submarine silicic lavas and domes have been described. The eruption of Havre caldera volcano in the Kermadec arc in 2012 provided an outstanding database for research on deep submarine silicic effusive eruptions because it produced 15 rhyolite (70–72 wt.% SiO2) lavas and domes with a total volume of ∼0.21 km3 from 14 separate seafloor vents. Moreover, in 2015, the seafloor products were observed, mapped and sampled in exceptional detail (1-m resolution) using AUV Sentry and ROV Jason2 deployed from R/V Roger Revelle. Vent positions are strongly aligned, defining NW-SE and E-W trends along the southwestern and southern Havre caldera margin, respectively. The alignment of the vents suggests magma ascent along dykes which probably occupy faults related to the caldera margin. Four vents part way up the steeply sloping southwestern caldera wall at 1,200–1,300 m below sea level (bsl) and one on the caldera rim (1,060 m bsl) produced elongate lavas. On the steep caldera wall, the lavas consist of narrow tongues that have triangular cross-section shapes. Two of the narrow-tongue segments are connected to wide lobes on the flat caldera floor at ∼1,500 m bsl. The lavas are characterized by arcuate surface ridges oriented perpendicular to the propagation direction. Eight domes were erupted onto relatively flat sea floor from vents at ∼1,000 m bsl along the southern and southwestern caldera rim. They are characterized by steep margins and gently convex-up upper surfaces. With one exception, the domes have narrow spines and deep clefts above the inferred vent positions. One dome has a relatively smooth upper surface. The lavas and domes all consist of combinations of coherent rhyolite and monomictic rhyolite breccia. Despite eruption from deep-water vents (most 〉900 m bsl), the Havre 2012 rhyolite lavas and domes are very similar to subaerial rhyolite lavas and domes in terms of dimensions, volumes, aspect ratio, textures and morphology. They show that lava morphology was strongly controlled by the pre-existing seafloor topography: domes and wide lobes formed where the rhyolite was emplaced onto flat sea floor, whereas narrow tongues formed where the rhyolite was emplaced on the steep slopes of the caldera wall.

Description: This research was funded by an Australian Research Council Postdoctoral fellowship to RJC (DP110102196 and DE150101190), and National Science Foundation grants OCE1357443 and OCE1357216. FI was supported by a Tasmanian Government Postgraduate Award.

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 264, doi:10.3389/fmicb.2017.00264.

Description: The occurrence of bacteria in the food processing environments plays a key role in food contamination and development of spoilage. Species of the genus Pseudomonas are recognized as major food spoilers and the capability to actually determine spoilage can be species- as well as strain-dependent. In order to improve the taxonomic resolution of 16S rRNA gene amplicons, in this study we used oligotyping to investigate the diversity of Pseudomonas populations in meat and dairy processing environments. Sequences of the V1–V3 regions from previous studies were used, including environmental swabs and food samples from both meat and dairy processing plants. We showed that the most frequently found oligotypes belonged to Pseudomonas fragi and P. fluorescens, that the most abundant oligotypes co-occurred, and were shared between the meat and dairy datasets. All the oligotypes occurring in foods were also identified in the environmental samples of the corresponding plants, highlighting the important role of the environment as a source of strains for food contamination. Oligotypes of the same species showed different levels depending on food processing and type of sample, suggesting that different strains of the same species can have different adaptation efficiency, leading to resilient bacterial associations.

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 109, doi:10.3389/fmars.2017.00109.

Description: Assessment of underwater noise is of particular interest given the increase in noise-generating human activities and the potential negative effects on marine mammals which depend on sound for many vital processes. The Azores archipelago is an important migratory and feeding habitat for blue (Balaenoptera musculus), fin (Balaenoptera physalus) and sei whales (Balaenoptera borealis) en route to summering grounds in northern Atlantic waters. High levels of low frequency noise in this area could displace whales or interfere with foraging behavior, impacting energy intake during a critical stage of their annual cycle. In this study, bottom-mounted Ecological Acoustic Recorders were deployed at three Azorean seamounts (Condor, Açores, and Gigante) to measure temporal variations in background noise levels and ship noise in the 18–1,000 Hz frequency band, used by baleen whales to emit and receive sounds. Monthly average noise levels ranged from 90.3 dB re 1 μPa (Açores seamount) to 103.1 dB re 1 μPa (Condor seamount) and local ship noise was present up to 13% of the recording time in Condor. At this location, average contribution of local boat noise to background noise levels is almost 10 dB higher than wind contribution, which might temporally affect detection ranges for baleen whale calls and difficult communication at long ranges. Given the low time percentatge with noise levels above 120 dB re 1 μPa found here (3.3% at Condor), we woud expect limited behavioral responses to ships from baleen whales. Sound pressure levels measured in the Azores are lower than those reported for the Mediterranean basin and the Strait of Gibraltar. However, the currently unknown effects of baleen whale vocalization masking and the increasing presence of boats at the monitored sites underline the need for continuous monitoring to understand any long-term impacts on whales.

Description: Fundação para a Ciência e a Tecnologia (FCT) and Fundo Regional da Ciência e Tecnologia (FRCT), through research projects TRACE (PTDC/MAR/74071/2006), MAPCET (M2.1.2/F/012/2011), and FCT Exploratory project (IF/00943/2013/CP1199/CT0001), supported by funds from FEDER, the Competitiveness Factors Operational (COMPETE), QREN, POPH, European Social Fund, Portuguese Ministry for Science and Education, and Proconvergencia Açores/EU Program. We also acknowledge funds provided by FCT to MARE, through the strategic project UID/MAR/04292/2013, that also supported fees for this open access publication. MR is supported by a DRCT doctoral grant (M3.1.a/F/028/2015), IC was supported by a FCT doctoral grant (SFRH/BD/41192/2007) and MAS is supported by an FCT-Investigator contract (IF/00943/2013).

Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 682, doi:10.3389/fmicb.2017.00682.

Description: The Epsilonproteobacteria is the fifth validly described class of the phylum Proteobacteria, known primarily for clinical relevance and for chemolithotrophy in various terrestrial and marine environments, including deep-sea hydrothermal vents. As 16S rRNA gene repositories have expanded and protein marker analysis become more common, the phylogenetic placement of this class has become less certain. A number of recent analyses of the bacterial tree of life using both 16S rRNA and concatenated marker gene analyses have failed to recover the Epsilonproteobacteria as monophyletic with all other classes of Proteobacteria. In order to address this issue, we investigated the phylogenetic placement of this class in the bacterial domain using 16S and 23S rRNA genes, as well as 120 single-copy marker proteins. Single- and concatenated-marker trees were created using a data set of 4,170 bacterial representatives, including 98 Epsilonproteobacteria. Phylogenies were inferred under a variety of tree building methods, with sequential jackknifing of outgroup phyla to ensure robustness of phylogenetic affiliations under differing combinations of bacterial genomes. Based on the assessment of nearly 300 phylogenetic tree topologies, we conclude that the continued inclusion of Epsilonproteobacteria within the Proteobacteria is not warranted, and that this group should be reassigned to a novel phylum for which we propose the name Epsilonbacteraeota (phyl. nov.). We further recommend the reclassification of the order Desulfurellales (Deltaproteobacteria) to a novel class within this phylum and a number of subordinate changes to ensure consistency with the genome-based phylogeny. Phylogenomic analysis of 658 genomes belonging to the newly proposed Epsilonbacteraeota suggests that the ancestor of this phylum was an autotrophic, motile, thermophilic chemolithotroph that likely assimilated nitrogen from ammonium taken up from the environment or generated from environmental nitrate and nitrite by employing a variety of functional redox modules. The emergence of chemoorganoheterotrophic lifestyles in several Epsilonbacteraeota families is the result of multiple independent losses of various ancestral chemolithoautotrophic pathways. Our proposed reclassification of this group resolves an important anomaly in bacterial systematics and ensures that the taxonomy of Proteobacteria remains robust, specifically as genome-based taxonomies become more common.

Description: The study was supported by a Discovery Outstanding Researcher Award (DP120103498) and an Australian Laureate Fellowship (FL150100038) from the Australian Research Council.