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  • RFLP  (50)
  • phosphorus  (44)
  • Springer  (94)
  • American Association for the Advancement of Science
  • Cambridge University Press
  • 1995-1999  (94)
  • 1975-1979
  • 1995  (94)
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  • Springer  (94)
  • American Association for the Advancement of Science
  • Cambridge University Press
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  • 1995-1999  (94)
  • 1975-1979
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  • 1
    ISSN: 1572-8854
    Keywords: Octahedral ; phosphorus ; chloride
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract The title compound [P(tpp)Cl2]+Cl− crystallizes in the space group P21/n witha=10.701(2),b=24.860(2),c=14.799(2), β=94.24(2)°,Z=4. The phosphorus atom has an octahedral coordination geometry formed by the four nitrogen atoms (Np) of the porphyrinato group and the two chloride ions. The average phosphorus-chloride distance is 2.150(1) Å, with phosphorus situated 0.006 Å below the porphyrin ring.
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  • 2
    ISSN: 1432-1432
    Keywords: Escherichia coli ; RAPD ; RFLP ; Clonal theory ; Recombination
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Analysis of the Escherichia coli population by multilocus enzyme electrophoresis (MLEE) has established its clonal organization, but there is increasing evidence that horizontal DNA transfer occurs in E. coli. We have assessed the genetic structure of the species E. coli and determined the extent to which recombination can affect the clonal structure of bacteria. A panel of 72 E. coli strains from the ECOR collection was characterized by random amplified polymorphic DNA (RAPD) and restriction-fragment-length polymorphism (RFLP) of the ribosomal RNA gene (rrn) regions. These strains have been characterized by MLEE and are assumed to reflect the range of genotypic variation in the species as a whole. Statistical analysis, including factorial analysis of correspondence (FAC) and hierarchical classifications, established that the data obtained with the three genetic markers are mutually corroborative, thus providing compelling evidence that horizontal transfer does not disrupt the clonal organization of the population. However, there is a gradient of correlation between the different classifications which ranges from the highly clonal structure of 132 group strains causing extraintestinal infections in humans to the less-stringent structure of B1 group strains that came mainly from nonprimate mammals. This group (B1) appears to be the framework from which the remaining non-A group strains have emerged. These results indicate that RAPD analysis is well suited to intraspecies characterization of E. coli. Lastly, treating the RAPD data by FAC allowed description of subgroup-specific DNA fragments which can be used, in a strategy comparable to positional cloning, to isolate virulence genes.
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  • 3
    ISSN: 1436-5073
    Keywords: aluminium oxide ; phosphorus ; XRF ; RBS ; FTIR
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Phosphorus-doped aluminium oxide thin films were deposited in a flow-type ALE reactor from AlCl3, H2O and from either P2O5 or trimethyl-phosphate. Structural information of the films was obtained from Fourier transform infrared (FTIR) spectra. Rutherford backscattering spectroscopy (RBS) was used to quantitatively determine the composition of the films. The P/Al intensity ratios calculated from X-ray fluorescence (XRF) results were in a linear relation with the P/Al concentration ratios calculated from RBS results. For comparison, the intensity ratios of the phosphorus peak (P=O) at about 1250 cm−1 and the aluminium peak (Al-O) at about 950 cm−1 were determined from the IR absorption spectra. The calibration of FTIR peak intensities was done by plotting the intensity ratios of phosphorus and aluminium peaks against the P/Al concentration ratios measured by RBS. FTIR gave also a linear calibration curve with RBS but the method is less suitable for routine analysis of P/Al ratio than XRF.
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  • 4
    ISSN: 1573-0417
    Keywords: diatoms ; eutrophication ; lake management ; paleolimnology ; British Columbia ; lakes ; phosphorus ; training sets
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences
    Notes: Abstract Eighteen lakes were added to a published training set of 46 British Columbia (BC) lakes in order to expand the original range of total phosphorus (TP) concentrations. Canonical correspondence analysis (CCA) was used to analyze the relationship between diatom assemblages and environmental variables. Specific conductivity and [TP] each explained significant (P≤0.05) directions of variance in the distribution of the diatoms. The relationship between diatom assemblages and [TP] was sufficiently strong to warrant the development of a weighted-averaging (WA) regression and calibration model that can be used to infer past trophic status from fossil diatom assemblages. The relationship between observed and inferred [TP] was not improved by the addition of more eutrophic lakes, however the [TP] range and the number of taxa used in the transfer function are now superior to the original model. Diatom species assemblages changed very little in lakes with TP concentrations greater than 85 µg 1−1, so we document the development of a model containing lakes with TP≤85 µg 1−1. The updated model uses 59 training lakes and covers a range of species optima from 6 to 41.9 µg 1−1 TP, and a total of 150 diatom taxa. The updated inference model provided a more realistic reconstruction of the anthropogenic history of a highly eutrophic BC lake. The model can now be used to infer past nutrient conditions in other BC lakes in order to assess changes in trophic status.
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  • 5
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    Nutrient cycling in agroecosystems 41 (1995), S. 167-178 
    ISSN: 1573-0867
    Keywords: phosphorus ; workshop ; environment ; review
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A workshop was held in 1990 in Muscle Shoals, Alabama to discuss current and future research on phosphorus in agriculture. Twenty four presentations were given in areas ranging from basic to applied research. For five of the research areas presented at the workshop, this paper presents a literature review, a review of presentations at the workshop, and a discussion of future research ideas.
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  • 6
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    Nutrient cycling in agroecosystems 43 (1995), S. 109-115 
    ISSN: 1573-0867
    Keywords: phosphorus ; European network ; maintenance fertilization ; fixation capacity ; comparison of methods
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract After three years of a research network project on mineral phosphorus fertilization including five experimental fields located in Europe the first results are discussed. Crop response was very significant to TSP application in the alluvial calcareous polder soil of Netherlands, and in the brown silty acid soil of Scotland, both having a low level of P availability and a high fixation capacity. In the alluvial sandy loam on chalk in England, a response was observed to the first fertilization level equal to the previous crop export of phosphorus. In the brown sandy-silty soil on sand in Germany the highest rate of TSP led to a response in the third year. No effect on the final yields was observed in the brown silt loam of Belgium characterised by a textural B horizon with a high P fixation capacity. The critical values for phosphorus fertilization are discussed as the amount of P needed to maintain a target value of soil phosphorus. Concerning the supply of the different soils, no balance was reached in the Dutch and Scottish soils, a steady state was reached in the English soil with the return of the previous crop removal and the critical value for P was lower than the return of the previous crop export in the German and Belgian soils. According to the eight methods of P determination compared in the network, the P contents in the plow layer were raised in the soils of Netherlands, England and Scotland. They remained at the same level or fluctuated depending on the soil testing methods in Germany and in Belgium. High correlations exist between the different methods used in routine analysis, except for the calcium cloride and calcium acetate lactate method. Annual fluctuations in the soil P were detected at different depths depending on analytical methods and need further research.
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  • 7
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    Nutrient cycling in agroecosystems 43 (1995), S. 131-136 
    ISSN: 1573-0867
    Keywords: phosphorus ; titanium ; fertilizer efficiency ; plant nutrition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To study the titanium effect on P nutrition, a greenhouse experiment withCapsicum annuum L., cv. Bunejo plants growing under differential P fertilization was conducted. All the plants were grown under identical conditions and they only differred in the P fertilization and in Ti supply. Plant biomass production of the Ti-untreated plants was affected by the diminution of the P-feed, but the plants growing under the lowest P supply did not showed any deficiency symptom during the crop cycle. All the Ti-treated plots showed a significative increase of the plant biomass against their corresponding untreated references. The biomass enhancement was mainly caused by the increase of the fruit yield with an absolute enhancement of 62% in the plants growing under the lowest P feed, and of 45% in the plants with a complete P support.
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  • 8
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    Nutrient cycling in agroecosystems 43 (1995), S. 209-215 
    ISSN: 1573-0867
    Keywords: phosphorus ; saturation ; inventory ; leaching ; eutrophication
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The last three decades, pig breeding has evolved towards a specialised, large scaled, land independent bio-industry in the province of West-Flanders. Subsequently, in certain regions, very high amounts of liquid pig manure are produced each year. This pig slurry is used as a fertilizer at a rate which very often exceeds normal agricultural practices. Because of the nonequilibrium between the phosphorus crop requirements and the P-inputs, phosphates accumulate in the soil. However, the phosphate sorption capacity of a soil is limited. Once the sorption capacity is exceeded, phosphates will start leaching through the soil profile. Since, during winter, in these areas, the groundwater table is situated at a depth of less than 1.0 m, phosphate breakthrough might take place. In the sandy loam soil region (± 1000 km2) of the province, an inventory of the P status of the soil was made. The region was sampled according to a regular grid with 2 km intervals. At random, some sample points were only 500 m apart. This resulted in a total of 296 samplings. In view of fertilizer recommendations, lactate extractable P of the plough layer (0-30 cm) was determined. A maximum value of 101 mg P 100 g−1 of air dry soil, a minimum value of 6 mg P 100 g−1 and a median value of 31 mg P 100 g−1 were found, indicating that for half of the spots monitored, the P status of the soil is high to very high. An oxalate extraction was done to investigate the phosphate saturation of the soil profile (0-90 cm). Based on a critical phosphate saturation degree of 30%, more than half of the soil profiles are phosphate saturated. Phosphate leaching at a rate higher than 0.1 mg ortho-P 1−1 at a depth of 90 cm can be expected. Therefore, a restriction of the P fertilization should be highly recommended. The geostatistical processing of the data using block kriging resulted in a spatial continuous estimate of the phosphate saturation degree. A good agreement was found between the pig density and the phosphate saturation degree of the soil profile.
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  • 9
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    Nutrient cycling in agroecosystems 45 (1995), S. 221-233 
    ISSN: 1573-0867
    Keywords: fertilizer recovery ; modelling ; nitrogen ; nutrient efficiency ; nutrient surplus ; phosphorus ; Poland
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Research on nutrient losses from agricultural systems should try to relate these losses to farm characteristics. This was done for private farms in two districts in Poland. Using data from a farm survey, nutrient surpluses and Nutrient Use Efficiency (NUE, defined as the ratio of outgoing and incoming nutrients) were calculated for nitrogen and phosphorus. Both nutrient surplus and NUE are relatively high. A model was developed to estimate surpluses and NUE from farm characteristics like location, farm size, fertilizer application level, animal density, grass production and sugar beet or potato area. The results of the model are satisfying for nutrient surplus (R2=0.9) and nitrogen NUE (R2=0.4). Estimation of phosphorus NUE was not satisfactory. High surpluses are associated with high fertilizer applications, high animal density and high grass production while an increasing share of sugar beets leads to lower surpluses. A high nitrogen NUE is associated with low fertilizer applications, low animal density and little grass production, and with a high sugar beet area share. Results suggest that, with exception of sugar beet, fertilizer recovery in Poland is very low. Sugar beet, however, combines high fertilizer applications with low surpluses and high NUE. The outcome of the model can be used in the design of environmental policies. The paper ends with some remarks on the type of measures that can be taken, and the effects these will have on private farms in Poland.
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  • 10
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    Nutrient cycling in agroecosystems 44 (1995), S. 1-8 
    ISSN: 1573-0867
    Keywords: aerobic incubation ; cation-anion-exchange resin ; phosphorus ; resin beads ; resin membranes ; suspension incubation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Six Portuguese soils of varying P sorption capacity were incubated aerobically at 30° C without and with added P in order to give 0.1.mg P L−1 in the soil solution. Two methods of measuring extractable P were compared: (i) mixed-bed cation-anion-resin beads in bags and (ii) a simpler method with anion-resin membrane only. The bag method extracted about twice and 1.5 times as much as the strip method, respectively, without and with added P. The relationships were much closer after one extraction for 2 hours (r = 0.982, p 〈 0.01) instead of the cumulative extraction of 24 hours (r = 0.635,p 〉 0.05.). P recovery after incubation was inversely related to some soil properties as organic matter, buffer capacity, selective dissolution Al forms (Alox and Ald) and P sorption. It is suggested that the simpler resin membrane method is more adequate to assess P for many studies of P reaction with soil. A simpler incubation method was tried, consisting of incubation as a soil suspension in water at a high temperature (50° C). The results suggested that this method gave similar results to aerobic incubation, with the advantage that there was no need to measure the required and final water contents of incubated soil.
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  • 11
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    Nutrient cycling in agroecosystems 45 (1995), S. 193-197 
    ISSN: 1573-0867
    Keywords: cation activity ; phosphorus ; potassium chloride ; soil solution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The electrolyte concentration of the soil solution affects the availability of some nutrients in the soil, especially of P, but it is not know at what salt concentration the reactions start to be significantly affected and their magnitude. This study was carried out to evaluate the effect of rates of potassium chloride (KCl) on some soil parameters that determine supplying of P, K, Ca, Mg, and Al in an unlimed acid soil. Increasing rates of KCl (from zero up to 2000 mg K kg−1) were applied to soil samples fertilized with 360 mg P kg−1. Solution (Cli) and exchangeable (Csi) forms of P, Ca, Mg, K, and Al were determined in the treated soil samples after 30-days of incubation; cation activity in solution and their selectivity coefficients were then calculated. Addition of KCl at rates equal to or above 500 mg K kg−1 caused a large relative increase on P in the soil solution (Pli) but a small and insignificant increase on the absolute value of Pli. All forms of soil K increased with increases on K applied, and buffer power for K varied according to the range of soil K. At all KCl rates, K displaced Ca, Mg, and Al from the solid phase to the soil solution, but had no effect on the extractable values. The relative preference of cations for the adsorption sites increased with increase on cation valency, and only those selectivity coefficients involving K were affected by K applied.
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  • 12
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    Molecular biology reports 22 (1995), S. 33-35 
    ISSN: 1573-4978
    Keywords: fish ; repetitive DNA ; RFLP ; satellite DNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A member of satellite repetitive DNA was isolated and sequenced from a saltwater fishSillago japonica (Percoidei). This sequence consists of several oligo-dA/dT tracts and two inverted repeats which resemble each other. Dot blot hybridization analysis using a satellite DNA clone pSJ2 among the species in the suborder Percoidei revealed that the pSJ2 sequence was amplified at least after the family Sillaginidae had been derived.
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  • 13
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    Theoretical and applied genetics 90 (1995), S. 1063-1067 
    ISSN: 1432-2242
    Keywords: T. monococcum ssp. monococcum ; T. monococcum ssp. boeoticum ; T. urartu ; RFLP ; Diversity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The A genome of the Triticeae is carried by three diploid species and subspecies of the genus Triticum: T. monococcum ssp. monococcum, T. monococcum ssp. boeoticum, and T. urartu, the A-genome donor of bread wheat. These species carry many genes of agronomic interest, including disease resistances, and may also be used for the genetic mapping of the A genome. The aim of this study was to evaluate the variability present in a sample of 25 accessions representative of this group using RFLP markers. Twenty probes, consisting of genomic DNA or cDNA from wheat, were used in combination with four restriction enzymes. A high level of polymorphism was found, especially at the interspecific level. Selecting the most informative enzymes appeared to be of great importance in order to obtain a stable structure for the diversity observed with only 20 probes. The results are largely consistent with taxonomy and data relating to geographical origins. The probes were also tested on 14 wheat cutivars. A good correlation coefficient was found for their informative values on wheat cultivars and diploid lines. Whether the group of species studied here would be useful for genetic mapping remains to be determined. Nevertheless, RFLP markers will be useful to follow genes that can possibly be introgressed from these species into cultivated wheat.
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  • 14
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    Theoretical and applied genetics 90 (1995), S. 1198-1203 
    ISSN: 1432-2242
    Keywords: Diplospory ; RFLP ; Bulk-segregant analysis ; Genome similarity ; Intergeneric hybrids ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Polyploid plants in the genus Tripsacum, a wild relative of maize, reproduce through gametophytic apomixis of the diplosporous type, an asexual mode of reproduction through seed. Moving gene(s) responsible for the apomictic trait into crop plants would open new areas in plant breeding and agriculture. Efforts to transfer apomixis from Tripsacum into maize at CIMMYT resulted in numerou intergeneric F1 hybrids obtained from various Tripsacum species. A bulk-segregant analysis was carried out to identify molecular markers linked to diplospory in T. dactyloides. This was possible because of numerous genome similarities among related species in the Andropogoneae. On the basis of maize RFLP probes, three restriction fragments co-segregating with diplospory were identified in one maize-Tripsacum dactyloides F1 population that segregated 1∶1 for the mode of reproduction. The markers were also found to be linked in the maize RFLP map, on the distal end of the long arm of chromosome 6. These results support a simple inheritance of diplospory in Tripsacum. Manipulation of the mode of reproduction in maize-Tripsacum backcross generations, and implications for the transfer of apomixis into maize, are discussed.
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  • 15
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    Theoretical and applied genetics 91 (1995), S. 448-456 
    ISSN: 1432-2242
    Keywords: QTLs ; RFLP ; Pearl millet ; Downy mildew resistance
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Quantitative trait loci (QTLs) for resistance to pathogen populations of Scelerospora graminicola from India, Nigeria, Niger and Senegal were mapped using a resistant x susceptible pearl millet cross. An RFLP map constructed using F2 plants was used to map QTLs for traits scored on F4 families. QTL analysis was carried out using the interval mapping programme Mapmaker/QTL. Independent inheritance of resistance to pathogen populations from India, Senegal, and populations from Niger and Nigeria was shown. These results demonstrate the existence of differing virulences in the pathogen populations from within Africa and between Africa and India. QTLs of large effect, contributing towards a large porportion of the variation in resistance, were consistently detected in repeated screens. QTLs of smaller and more variable effect were also detected. There was no QTLs that were effective against all four pathogen populations, demonstrating that pathotype-specific resistance is a major mechanism of downy mildew resistance in this cross. For all but one of the QTLs, resistance was inherited from the resistant parent and the inheritance of resistance tended to be the result of dominance or over-dominance. The implications of this research for pearl millet breeding are discussed.
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  • 16
    ISSN: 1432-2242
    Keywords: Brassica rapa ; RFLP ; RAPD ; QTL ; Palmitic acid
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract F2 progeny (105 individuals) from the cross Jo4002 x Sv3402 were used to identify DNA markers associated with palmitic-acid content in spring turnip rape (Brassica rapa ssp. oleifera). QTL mapping and ANOVA analysis of 140 markers exposed one linkage group with a locus controlling palmitic-acid content (LOD score 27), and one RAPD (random amplified polymorphic DNA) marker, OPB-11a, closely linked (1.4 cM) to this locus. Palmitic-acid content in the 62 F2 plants with the visible allele of marker OPB-11a was 8.45 ±3.15%, while that in the 24 plants without it was 4.59 ±0.97%. As oleic-acid concentration is affected by a locus on the same linkage group as the palmitic-acid locus, this locus probably controls the chain elongation from palmitic acid to oleic acid (through stearic acid). Marker OPB-11a may be used in future breeding programs of spring turnip rape to simplify and hasten the selection for palmitic-acid content.
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  • 17
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    Theoretical and applied genetics 91 (1995), S. 505-509 
    ISSN: 1432-2242
    Keywords: Chloroplast DNA ; Mitochondrial DNA ; rDNA ; RFLP ; Witloof chicory
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Restriction fragment length polymorphisms of cytoplasmic DNAs and nuclear rDNA were analyzed in several Cichorium intybus genotypes, comprising four white inbred lines, eight red witloof experimental lines, and a number of F1 hybrids derived from two white parents. Chloroplast and mitochondrial restriction patterns led to the distinction between two different cytoplasms, called I and II. Southern hybridization using a nuclear rDNA probe revealed that all the lines possessed two types of rDNA repeat units. The shortest unit was 10 kb and was common to all lines. The largest rDNA repeat unit was 10.5 kb in lines I and 10.4 kb in lines II. In addition, a sequence heterogeneity between the 10.5 and 10.4-kb rDNA repeat units was revealed by Sac I digestion. A 10-kb rDNA unit was successively cloned, mapped, and used as a probe to check the genetic purity of F1 hybrid seeds between line I and II white parents. We found a 30% average percentage of impurities, originating both from selfing and full-sib crossing, in different open-pollinated hybrid samples.
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  • 18
    ISSN: 1432-2242
    Keywords: Glycine max ; Heterodera glycines ; RFLP ; Genetic mapping
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Resistance to the soybean cyst nematode (SCN) (Heterodera glycines Ichinohe) is difficult to evaluate in soybean [Glycine max (L.) Merr.] breeding. PI 437.654 has resistance to more SCN race isolates than any other known soybean. We screened 298 F6∶7 recombinant-inbred lines from a cross between PI 437.654 and ‘BSR101’ for SCN race-3 resistance, genetically mapped 355 RFLP markers and the I locus, and tested these markers for association with resistance loci. The Rhg 4 resistance locus was within 1 cM of the I locus on linkage group A. Two additional QTLs associated with SCN resistance were located within 3cM of markers on groups G and M. These two loci were not independent because 91 of 96 lines that had a resistant-parent marker type on group G also had a resistant-parent marker type on group M. Rhg 4 and the QTL on G showed a significant interaction by together providing complete resistance to SCN race-3. Individually, the QTL on G had greater effect on resistance than did Rhg 4, but neither locus alone provided a degree of resistance much different from the susceptible parent. The nearest markers to the mapped QTLs on groups A and G had allele frequencies from the resistant parent indicating 52 resistant lines in this population, a number not significantly different from the 55 resistant lines found. Therefore, no QTLs from PI 437.654 other than those mapped here are expected to be required for resistance to SCN race-3. All 50 lines that had the PI 437.654 marker type at the nearest marker to each of the QTLs on groups A and G were resistant to SCN race-3. We believe markers near to these QTLs can be used effectively to select for SCN race-3 resistance, thereby improving the ability to breed SCN-resistant soybean varieties.
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  • 19
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    Theoretical and applied genetics 91 (1995), S. 681-690 
    ISSN: 1432-2242
    Keywords: RFLP ; Barley ; Hordeum vulgare ssp. spontaneum ; Gramineae ; Comparative mapping
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Several gene linkage maps have been produced for cultivated barley. We have produced a new linkage map for barley, based on a cross between Hordeum vulgare subsp. spontaneum and Hordeum vulgare subsp. vulgare (Hvs x Hvv), having a higher level of polymorphism than most of the previous barley crosses used for RFLP mapping. Of 133 markers mapped in the Hvs x Hvv F2 population, 69 were previously mapped on other barley maps, and 26 were mapped in rice, maize, or wheat. Two known gene clones were mapped as well as two morphological markers. The distributions of previously mapped markers were compared with their respective barley maps to align the different maps into one consensus map. The distributions of common markers among barley, wheat, rice and maize were also compared, indicating colinear linkage groups among these species.
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  • 20
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    Theoretical and applied genetics 91 (1995), S. 795-801 
    ISSN: 1432-2242
    Keywords: Salt stress ; Water deficient ; Heat shock ; Mapping ; Triticeae ; RFLP ; Linkage map
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Linkage relationships among genes responding to water-deficit, salt stress, and heat shock were investigated in diploid wheat, Triticum monococcum L. The position of these gene loci relative to closely linked markers and the centromeres is reported. It is proposed to continue to use the present T. monococcum mapping population and the genetic maps based thereon as a framework for future determination of relationships among other genes related to environmental stress in the tribe Triticeae.
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  • 21
    ISSN: 1432-2242
    Keywords: Heterozygosity ; Oryza sativa ; Heterosis ; RFLP ; Recombinant inbred lines
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Forty-seven recombinant inbred (RI) lines derived from a cross between two indica rices, cv ‘Phalguna’ and the Assam land race ARC 6650, were subjected to restriction fragment length polymorphism (RFLP) analysis using cloned probes defining 150 single-copy loci uniformly dispersed on the 12 chromosomes of rice. Of the probes tested, 47 detected polymorphism between the parents. Heterozygosity was calculated for each line and for each of the polymorphic loci. Average heterozygosity per line was 9.6% but was excessive (〉20%) in the 5 lines that seemed to have undergone outcrossing immediately prior to harvest. Average heterozygosity detected by each probe across the 47 RI lines was 9.7%. The majority of probes revealed the low level of heterozygosity (〈8%) expected for F5-F6 lines in a species showing about 5% outbreeding. On the other hand, 7 probes exhibited heterozygosity in excess of 15%, while with a eighth probe (RG2 from chromosome 11) heterozygosity varied according to the restriction enzyme employed, ranging from 2% with SaII to 72% with EcoRV. The presence of 34 recombination sites in a segment of the genome as short as 24 kb indicates a strong selection for recombination between two neighbouring loci, one required as homozygous for the ‘Phalguna’ allele, and the other heterozygous. Since selection was principally for yield advantage over that of the high-yielding parent, ‘Phalguna’, one or both of these loci may be important for heterosis in this cross. The results also indicate that heterozygosity as measured by RFLP can depend on the particular restriction endonuclease employed.
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  • 22
    ISSN: 1432-2242
    Keywords: Leaf rust ; RFLP ; RAPD ; Wheat ; Agropyron elongatum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The objective of this study was to identify molecular markers linked to the wheat leaf rust resistance gene Lr24 derived from Agropyron elongatum (3DL/3Ag translocation). Two near isogenic lines (NILs), ‘Arina’ and Lr24/7 * “Arina”, were screened for polymorphism at the DNA level with 115 RFLP probes. Twenty-one of these probes map to the homoeologous group 3. In addition, 360 RAPD primers were tested on the NILs. Six RFLP probes showed polymorphism between the NILs, and 11 RAPD primers detected one additional band in the resistant NIL. The genetic linkage of the polymorphic markers with Lr24 was tested on a segregating F2 population (150 plants) derived from a cross between the leaf rust resistant Lr24/7 * “Arina” and the susceptible spelt (Triticum spelta) variety ‘Oberkulmer’. All 6 RFLP markers were completely linked to Lr24: one was inherited as a codominant marker (PSR1205), one was in coupling phase (PSR1203) and 4 were in repulsion phase (PSR388, PSR904, PSR931, PSR1067) with Lr24. The localization of these probes on chromosome 3D was confirmed by nulli-tetrasomic analysis. Distorted genotypic segregation was found for the Codominant RFLP marker PSR1205. This distortion can be explained by the occurrence of hemizygous plants. One of the 11 RAPD markers (OPJ-09) also showed complete linkage to theLr24 resistance gene. The polymorphic RAPD fragment was cloned and sequenced. Specific primers were synthesized, and they produced an amplification product only in the resistant plants. This specific marker allows a reliable and rapid screening of a large number of genotypes in practical breeding. Analysis of 6 additional lines containing Lr24 revealed that 3 lines have a smaller chromosomal segment of A. elongatum than lines derived from ‘Agent’, a commonly used gene donor for the Lr24 resistance gene.
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  • 23
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    Theoretical and applied genetics 91 (1995), S. 869-875 
    ISSN: 1432-2242
    Keywords: Genetic map ; Linkage ; Eucalypts ; RFLP ; RAPD
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    Topics: Biology
    Notes: Abstract An integrated genetic linkage map for E. nitens was constructed in an outbred three-generation pedigree. Analysis of 210 RFLP, 125 RAPD and 4 isozyme loci resulted in 330 markers linked in 12 linkage groups covering 1462 cM (n=11 in eucalypts). The 12th linkage group is comprised of only 5 markers and will probably coalesce with another linkage group when further linked loci are located. Co-dominant RFLP loci segregating in both parents were used to integrate linkages identified in the male and female parents. Differences in recombination frequencies in the two parents were observed for a number of pairs of loci, and duplication of sequences was identified both within and between linkage groups. The markers were distributed randomly across the genome except for the RFLPs in linkage group 10 and for some loci showing segregation distortion, which were clustered into three regions of the map. The use of a large number of co-dominant RFLP loci in this map enables it to be used in other pedigrees of E. nitens and forms a basis for the detection and location of QTL in E. nitens and other eucalypt species.
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  • 24
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    Theoretical and applied genetics 91 (1995), S. 1210-1213 
    ISSN: 1432-2242
    Keywords: Stylosanthes ; DNA isolation ; RFLP
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    Notes: Abstract A DNA isolation method suitable for genomic library construction and RFLP analyses of the forage legume Stylosanthes was developed. Probes isolated using this method were used to investigate the feasibility of constructing RFLP-based genetic maps in this genus. Two hundred and seventy-one PstI genomic DNA and 134 cDNA clones were analysed against four Stylosanthes accessions, including two tetraploids and two diploids, with the use of two restriction enzymes, DraI and HindIII. The proportion of clones which detected single-copy sequences from the PstI genomic library was higher than that from the cDNA library, but the percentage of clones which detected low-copy sequences was doubled in the latter. There was no significant difference in the level of RFLPs detected by gDNA and cDNA probes, although the level of polymorphism was lower in the diploids. A large proportion of RFLPs seemed to have resulted from mutation/base substitution events, and this was especially the case in diploids.
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  • 25
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    Theoretical and applied genetics 90 (1995), S. 331-334 
    ISSN: 1432-2242
    Keywords: Interspecific poplar hybrids ; Non-parental chloroplast DNA fragments ; Novel organelle DNA ; RFLP ; Chloroplast DNA recombination
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    Notes: Abstract A rare phenomenon of the occurrence of novel non-parental chloroplast DNA (cpDNA) variants in natural sexual interspecific hybrids between Populus deltoides var deltoides and P. nigra, P. x canadensis is described. Restriction fragment variation of cpDNA in 17 P. x canadensis cultivars was examined and compared with that of representative samples of P. deltoides and P. nigra using 83 combinations of 16 restriction enzymes and six Petunia hybrida cpDNA probes. Twelve cultivars had one to five novel non-parental cpDNA fragments in the chloroplast genome region homologous to the 9.0-kb PstI cpDNA fragment of Petunia from the large single-copy region.
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  • 26
    ISSN: 1432-2242
    Keywords: Molecular markers ; RFLP ; PCR ; SAPs ; DNA sequence ; Marker-assisted selection
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    Notes: Abstract The genomic clone RG64, which is tightly linked to the blast resistance gene Pi-2(t) in rice, provides means to perform marker-aided selection in a rice breeding program. The objective of this study was to investigate the possibility of generating a polymerase chain reaction (PCR)-based polymorphic marker that can distinguish the blast resistant gene, Pi-2(t), and susceptible genotypes within cultivated rice. RG64 was sequenced, and the sequence data was used to design pairs of specific primers for (PCR) amplification of genomic DNA from rice varieties differing in their blast disease responsiveness. The amplified products, known as sequenced-tagged-sites (STSs), were not polymorphic between the three varieties examined. However, cleavage of the amplified products with the restriction enzyme HaeIII generated a polymorphic fragment, known as specific amplicon polymorphism (SAP), between the resistant and the susceptible genotypes. To examine the power of the identified SAP marker in predicting the genotype of the Pi-2 (t) locus, we determined the genotypes of the F2 individuals at this locus by performing progeny testing for the disease response in the F3 generation. The results indicated an accuracy of more than 95% in identifying the resistant plants, which was similar to that using RG64 as the hybridization probe. The identification of the resistant homozygous plants increased to 100% when the markers flanking the genes were considered simultaneously. These results demonstrate the utility of SAP markers as simple and yet reliable landmarks for use in marker-assisted selection and breeding within cultivated rice.
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  • 27
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    Theoretical and applied genetics 91 (1995), S. 150-159 
    ISSN: 1432-2242
    Keywords: RFLP ; Mitochondrial DNA diversity ; Natural populations ; Cytoplasmic male sterility ; Daucus carota L.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Mitochondrial variability was investigated in natural populations of wild carrot (Daucus carota ssp carota) in different regions: South of France, Greece, and various sites in the Mediterranean Basin and Asia. Total DNA was digested with two restriction endonucleases (EcoRV and HindIII) and probed with three mitochondrial DMA-specific genes (coxI, atp6, and coxII). Twenty-five different mitochondrial types were found in 80 analyzed individuals. Thirteen mitotypes were found among the 7 French populations studied. On average, 4.4 different mitotypes were observed per population, and these mitotypes were well-distributed among the populations. All of the mitochondrial types were specific to a single region. However, the proportion of shared restriction fragments between 2 mitotypes from different regions was not particularly lower than that which occurred among mitotypes from a single region. On the basis of the sexual phenotype [male-sterile (MS) or hermaphrodite] of the plants studied in situ and that of their progeny, 2 mitotypes were found to be highly associated with male sterility. Eighty percent of the plants bearing these mitotypes were MS in situ, and all of these plants produced more than 30% MS plants in their progeny. This association with male sterility was consistent in several populations, suggesting an association with a cytoplasmic male-sterility system. Moreover, these two mitotypes had very similar mitochondrial DNA restriction patterns and were well-differentiated from the other mitotypes observed in wild plants and also from those observed in the two CMS types already known in the cultivated carrot. This suggests that they correspond to a third cytoplasmic sterility.
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    Theoretical and applied genetics 90 (1995), S. 1-10 
    ISSN: 1432-2242
    Keywords: Brassica rapa ; Brassica campestris ; Morphological variation ; Quantitative trait loci ; RFLP
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    Notes: Abstract Construction of a detailed RFLP linkage map of B. rapa (syn. campestris) made it possible, for the first time, to study individual genes controlling quantitative traits in this species. Ninety-five F2 individuals from a cross of Chinese cabbage cv ‘Michihili’ by Spring broccoli were analyzed for segregation at 220 RFLP loci and for variation in leaf, stem, and flowering characteristics. The number, location, and magnitude of genes underlying 28 traits were determined by using an interval mapping method. Zero to five putative quantitative trait loci (QTL) were detected for each of the traits examined. There were unequal gene effects on the expression of many traits, and the inheritance patterns of traits ranged from those controlled by a single major gene plus minor genes to those controlled by polygenes with small and similar effects. The effect of marker locus density on detection of QTL was analyzed, and the results showed that the number of QTL detected did not change when the number of marker loci used for QTL mapping was decreased from 220 to 126; however, a further reduction from 126 to 56 caused more than 15% loss of the total QTL detected. The detection of putative minor QTL by removing the masking effects of major QTL was explored.
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    Theoretical and applied genetics 90 (1995), S. 787-796 
    ISSN: 1432-2242
    Keywords: Sorghum ; RFLP ; Phylogeny Gene flow
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    Notes: Abstract Sixty-two single-copy sorghum DNA clones were used to compare restriction fragment patterns of 53 sorghum accessions from Africa, Asia and the United States. Included were accessions from five morphological races of the cultivated subspecies bicolor, and four races of the wild subspecies verticilliflorum. From two to twelve alleles were detected with each probe. There was greater nuclear diversity in the wild subspecies (255 alleles in ten accessions) than in the domestic accessions (236 alleles in 37 accessions). Overall, 204 of the 340 alleles (60%) that were detected occurred in both subspecies. Phylogenetic analysis using parsimony separated the subspecies into separate clusters, with one group of intermediate accessions. Though exceptions were common, especially for the race bicolor, accessions classified as the same morphological race tended to group together on the basis of RFLP similarities. Selection for traits such as forage quality may have led to accessions genetically more similar to other races being classified as bicolors, which have a loose, small-grained panicle similar to wild races. Population statistics, calculated using four nuclear and four cytoplasmic probes that detect two alleles each, revealed a low but significant amount of heterozygosity, and showed little differentiation in alleles in the wild and cultivated subspecies. Outcrossing with foreign pollen appears to have been more important than migration via seed dispersal as a mechanism for gene flow between the wild and domestic accessions included in this study.
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    Theoretical and applied genetics 90 (1995), S. 1079-1086 
    ISSN: 1432-2242
    Keywords: RFLP ; Helianthus annuus ; Linkage map ; Consensus map ; CDNA
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    Notes: Abstract This paper provides the first description of a consensus map of the cultivated sunflower genome (Helianthus annuus L., n=17 chromosomes), based on RFLP. A total of 180 probe-enzyme combinations were mapped on at least one of five segregating progenies (three F2 and two BC1 populations), revealing 237 loci that did not show any distortion of segregation. The consensus linkage map obtained with these loci covers 1150 cM and consists of 16 linkage groups of more than 20 cM, 7 groups of less than 20 cM and 18 unlinked loci. The mean distance between loci is 7 cM, but in some regions intervals of 20 cM remain. Genotypic and gametic segregation distortions affect about 7% of loci. It was found that 25% of the probes mapped using several different restriction enzymes or that on different progenies they revealed 2 or more loci.
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  • 31
    ISSN: 1432-2242
    Keywords: Saccharum ; Intergeneric hybrids ; Isozymes ; RFLP ; STS-PCR ; In situ hybridization ; rDNA
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    Notes: Abstract Molecular markers were used to characterise sugarcane intergeneric hybrids between S. officinarum and E. arundinaceus. Very simple diagnostic tools for hybrid identification among the progeny were derived from isozyme electrophoresis and a sequence-tagged PCR. Two enzyme systems (GOT and MDH B) and PCR amplification revealing spacer-size variation in the 5s-rDNA cluster were found most convenient. Specific characterisation of the two genomic components was possible using RFLP and in situ hybridisation. The strong molecular differentiation between S. officinarum and E. arundinaceus allows the identification of numerous Erianthus-specific RFLP bands in the hybrids. Genomic DNA in situ hybridisation allows for the differentiation of the chromosomes contributed by S. officinarum and E. arundinaceus in chromosome preparations of the hybrids. In situ hybridisation with the 18s-5.8s-25s rDNA probe highlights the basic chromosome numbers in the two parental species. The potential of these techniques to monitor the Erianthus genome during the introgression process is discussed.
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  • 32
    ISSN: 1432-2242
    Keywords: RFLP ; QTL ; Rice ; Heading date ; Plant height ; Pleiotropic effects
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    Notes: Abstract ‘Lemont’ and ‘Teqing’ are both semidwarf rice varieties that differ in heading date by only 6 days. However, when ‘Lemont’ and ‘Teqing’ are crossed there is transgressive segregation for both heading date (HD) and plant height (PH). By testing 2418 F4 lines with 113 well-distributed RFLP markers, we identified and mapped chromosomal regions that were largely responsible for this transgressive segregation. QHd3a, a QTL from ‘Lemont’ that gives 8 days earlier heading, was identified on chromosome 3 approximately 3 cM from the marker RG348. Another QTL with a large effect, QHd8a, which gives 7 days earlier heading, was identified on chromosome 8 of ‘Teqing’ between RG20 and RG1034. Along with a QTL, QHd9a with a phenotypic effect of 3.5 days, these genomic regions collectively explain 76.5% of the observed phenotypic variance in heading date. Four QTLs which altered plant height from 4 to 7 cm were also mapped; these collectively explain 48.8% of the observed phenotypic variation in plant height. None of the QTLs for plant height mapped to chromosome 1, the location of the semidwarf gene sd-1. All three of the HD loci mapped to approximately the same genomic locations as PH QTLs, and in all cases, there was a reduction in height of approximately 1 cm for every day of earlier heading. The correspondence between the HD and some of the PH loci suggests that genes at these chromosome locations may have pleiotropic effects on both HD and PH. The observed heterosis in the F1 plants for HD can be largely explained by the dominance for earliness of the identified HD loci and distribution of earlier heading alleles in the parents. However, overdominance observed at one of the PH QTL may, at least in part, be responsible for the observed heterosis in PH.
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    Theoretical and applied genetics 91 (1995), S. 780-782 
    ISSN: 1432-2242
    Keywords: Physical mapping ; RFLP ; Cereals ; Triticum aestivum
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    Topics: Biology
    Notes: Abstract Cytologically based physical maps for the group 3 chromosomes of wheat were constructed by mapping 25 Triticum aestivum deletion lines with 29 T. tauschii and T. aestivum RFLP probes. The deletion lines divide chromosomes 3A, 3B, and 3D into 31 discrete intervals, of which 18 were tagged by marker loci. The comparison of the consensus physical map with a consensus RFLP linkage map of the group 3 chromosomes of wheat revealed a fairly even distribution of marker loci on the long arm, and higher recombination in the distal region.
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    Theoretical and applied genetics 91 (1995), S. 720-726 
    ISSN: 1432-2242
    Keywords: Secale cereale ; RFLP ; Cytogenetic mapping ; C-band ; In situ hybridization
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    Notes: Abstract A genetic map of rye, Secale cereale L., chromosome 1R covering 247 cM was constructed utilizing 27 RFLP and four C-band markers, including terminal C-bands. Genetic mapping of C-bands and the centromere, and in situ hybridization of three RFLP clones, allowed for the integration of the genetic and cytological maps. Eight contact points between the genetic and cytological maps revealed variation in the recombination distance to cytological distance ratio ranging between 0.25 and 1.95, a 7.8-fold difference. Recombination was found to be highest in the satellite region of 1RS and lowest in the most distal region of 1RL.
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  • 35
    ISSN: 1432-2242
    Keywords: Rice TGMS gene ; RAPD ; RFLP ; Molecular markers ; Gene tagging
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    Notes: Abstract The thermo-sensititve genic male-sterile (TGMS) gene in rice can alter fertility in response to temperature and is useful in the two-line system of hybrid rice production. However, little is known about the TGMS gene at the molecular level. The objective of this study was to identify molecular markers tightly linked with the TGMS gene and to map the gene onto a specific rice chromosome. Bulked segregant analysis of an F2 population from 5460s (a TGMS mutant line) x ‘Hong Wan 52’ was used to identify RAPD markers linked to the rice TGMS gene. Four hundred RAPD primers were screened for polymorphisms between the parents and between two bulks representing fertile and sterile plants; of these, 4 primers produced polymorphic products. Most of the polymorphic fragments contained repetitive sequences. Only one singlecopy sequence fragment was found, a 1.2-kb fragment amplified by primer OPB-19 and subsequently named TGMS1.2. TGMS1.2 was mapped on chromosome 8 with a RIL population and confirmed by remapping with a DHL population. Segregation analysis using TGMS1.2 as a probe indicated that TGMS1.2 both consegregated and was lined with the TGMS gene in this population. It is located about 6.7 cM from the TGMS gene. As TGMS1.2 is linked to the TGMS gene, the TGMS gene must be located on chromosome 8.
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    Theoretical and applied genetics 90 (1995), S. 17-26 
    ISSN: 1432-2242
    Keywords: Tomato (Lycopersicon esculentum) ; Genetic map ; RFLP ; Integrated map
    Source: Springer Online Journal Archives 1860-2000
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    Notes: Abstract The classical map of the short arm of chromosome 1 of tomato (Lycopersicon esculentum) has been shown to contain inaccuracies while the RFLP map of this region is known to be generally accurate. Molecular analysis of populations derived from crosses between L. esculentum lines carrying chromosome 1 classical markers and L. pennellii has enabled us to produce an integrated classical and RFLP marker map of this region. New data concerning the linkage relationships between classical markers have also been combined with previous data to produce a new classical map of the short arm of chromosome 1. The orders of the classical markers on these two new maps are in almost complete agreement and are very different to that shown on the previous classical map.
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    Theoretical and applied genetics 90 (1995), S. 173-181 
    ISSN: 1432-2242
    Keywords: RFLP ; Gliadin alleles ; Organization of Gli-1 loci ; Gli-2-type sequences on chromosome 1R Common wheat
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A correspondence between RFLP patterns and gliadin alleles at the Gli-1 and Gli-2 loci was established in a set of 70 common wheat (T.aestivum L.) cultivars using γ-gliadin (K32) and α-gliadin (pTU1) specific probes. All Gli-B1 and Gli-D1 alleles which differed in encoded γ-gliadins showed definite RFLP patterns after hybridization with the K32 probe. Two groups of Gli-B1 alleles, Gli-B1b-like and Gli-B1e-like, were identified, and these could originate from distinct genotypes of the presumptive donor of the B-genome. Intralocus recombination and/or gene conversion as well as small deletions, gene silencing and gene amplification were assumed to be responsible for the origin of new gliadin alleles. Silent γ-gliadin sequences were shown to exist in all of the genotypes studied. K32 also differentiated Gli-A1a from all other Gli-A1 alleles as well as the Gli-B11 allele in cultivars carrying the 1B/1R (wheat/rye) translocation. PTU1 was shown to recognize several Gli-A2 alleles, but not the Gli-B2 or Gli-D2 alleles. Moreover, this probe hybridized to chromosome 1R sequences suggesting the existence of rye gene(s), probably silent, for α-gliadin-like proteins on chromosome 1R.
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    Theoretical and applied genetics 90 (1995), S. 341-346 
    ISSN: 1432-2242
    Keywords: Disease resistance ; High resolution genetic map ; Recombination ; Ribosomal DNA ; RFLP
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    Notes: Abstract The mdm1 locus on the short arm of chromosome six confers resistance in maize to five strains of the maize dwarf mosaic virus (MDMV), an aphid transmitted potyvirus. The location of mdm1 in relation to RFLP and morphological loci on the short arm of chromosome six was determined using BC1 and F2 mapping populations. The following map order and distance in cM was obtained from the F2 population; jc1270-2.5-npi245-1.6-umc85/po1-0.5-mdm1/nor-0.5-bnl6.29A-0.5-npi235-0.8-npi101A-4.3-numc59. No recombination between mdm1 and the nucleolus organizer region (nor) was detected, as determined using a probe from the intergenic spacer region of the rDNA repeat. In order to resolve the relationship between mdm1 and the nor, and to recover recombinants around mdm1, a highresolution map within the polymitotic1 (po1) yellow kernel1 (y1) interval was generated using [po1 y1 tester (po1 mdm1 y1) x Pa405 (Po1 Mdm1 Y1)] F2 plants. The recessive po1 allele imparts a male-sterile phenotype when homozygous and since po1 and y1 are closely linked, the majority of fertile plants from white endosperm (y1/y1) F2 kernels will arise though a recombination event between the Pa405 Po1 allele and the y1 allele of the po1 y1 tester. Plants from 7,650 white (y1/y1) F2 kernels were examined (15,300 chromosomes) and a total of 626 F2∶3 recombinant families was recovered. Analysis of these recombinants revealed that mdm1 cosegregates with the nor. This lack of recombination between mdm1 and the nor suggests that: either (1) mdm1 is located in the region flanking the nor and recombination is suppressed within that region, or (2) mdm1 is located within the nor.
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    Theoretical and applied genetics 90 (1995), S. 129-134 
    ISSN: 1432-2242
    Keywords: Wheat ; RFLP ; Triticum dicoccoides ; T. araraticum ; Genetic divergence
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    Topics: Biology
    Notes: Abstract Intra- and inter-specific variations in the nuclear DNA of Triticum dicoccoides Körn. (2n = 28, genome constitution AABB) and T. araraticum Jakubz. (2n = 28, AAGG), wild species, respectively, of the Emmer and Timopheevi group, were studied by restriction fragment length polymorphism (RFLP) analysis. Total DNAs of 32 T. dicoccoides and 24 T. araraticum accessions, collected from throughout the distribution areas of these species, were treated with two 6-bp cutters and hybridized with 30 nuclear DNA clones as probes to detect RFLPs. A total of 167 hybrid bands were observed per accession. All the enzyme-probe combinations showed RFLPs between accessions. The average genetic distance between the T. dicoccoides accessions was 0.0135 ± 0.0031 and that between the T. araraticum accessions 0.0036 ± 0.0015, indicative of about a four-fold intraspecific variation in T. dicoccoides as compared to T. araraticum in terms of genetic distance. No significant genetic differentiation was found for the geographical populations of these species, the genetic distance between the two species being 0.0482 ± 0.0022. The interspecific divergence corrected for intraspecific divergence was 0.0395, about three times that for T. dicoccoides and 11 times that for T. araraticum. The results show that in the wild state the Emmer and Timopheevi groups are clearly differentiated and that T. dicoccoides has much greater variation than T. araraticum, suggesting a relatively recent origin for the latter and therefore a diphyletic origin for these species.
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    Theoretical and applied genetics 90 (1995), S. 189-193 
    ISSN: 1432-2242
    Keywords: Sugar beet ; Beta vulgaris ; RFLP ; RAPD
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    Notes: Abstract An updated map of sugar beet (Beta vulgaris L. ssp. vulgaris var ‘altissima Doell’) is presented. In this genetic map we have combined 248 RFLP and 50 RAPD loci. Including the loci for rhizomania resistance Rr1, hypocotyl colour R and the locus controlling the monogerm character M, 301 loci have now been mapped to the nine linkage groups covering 815 cM. In addition, the karyotype of some of the Beta vulgaris chromosomes has been correlated with existing RFLP and RAPD linkage maps.
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    Theoretical and applied genetics 90 (1995), S. 451-456 
    ISSN: 1432-2242
    Keywords: Lycopersicon esculentum ; Lycopersicon peruvianum ; RAPD ; RFLP ; Tomato spotted wiltvirus (TSWV)
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    Notes: Abstract The Sw-5 locus confers dominant resistance to tomato spotted wilt virus (TSWV). To map the location and facilitate the identification of markers linked to Sw-5 we developed a pair of near-isogenic lines (NILs) and an F2 Lycopersicon esculentum x L. pennellii population segregating for resistance to TSWV. DNA from the NILs was analyzed using 748 random 10-mer oligonucleotides to discern linked molecular markers using a random amplified polymorphic DNA (RAPD) approach. One random primer (GAGCACGGGA) was found to produce a RAPD band of about 2200 bp that demonstrates linkage to Sw-5. Data from co-segregation of resistance and restriction fragment length polymorphisms (RFLPs) in a F2 interspecific population position Sw-5 between the markers CT71 and CT220 near the telomere of the long arm of chromosome 9.
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    Theoretical and applied genetics 90 (1995), S. 643-649 
    ISSN: 1432-2242
    Keywords: Oil palm ; Elaeis guineensis Elaeis oleifera ; RFLP ; Genetic fingerprinting
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A variety of DNA probes was used to screen a diverse set of oil palm accessions in order to identify markers with a utility in genotype discrimination. This survey included samples of the commercial oil palm native to Africa (Elaeis guineensis Jacq.), the closely-related South American species [E.oleifera (HBK) Cortes] and inter-specific hybrids of the two. Of 106 major chloroplast bands none showed differences between E. guineensis and E. Oleifera. Mitochondrial and ribosomal probes were more informative inter-specifically (the former allowing identification of the maternal inheritance of mitochondria) and may be useful in hybrid breeding programmes; however, they were unable to identify polymorphism within E. guineensis. In contrast, low-copy nuclear genomic clones were able to identify intra-specific variation, though in most cases they revealed a relatively small number of allelic variants. One DNA probe showed a much larger number of band variants, revealing ten patterns amongst 13 E. guineensis accessions, and should prove useful in genetic fingerprinting and evaluation of oil-palm germplasm collections.
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  • 43
    ISSN: 1432-2242
    Keywords: RFLP ; RAPD ; Linkage map ; Sugi (Cryptomeria japonica) ; Three-generation pedigree
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    Topics: Biology
    Notes: Abstract A linkage map for sugi was constructed on the basis of restriction fragment length polymorphism (RFLP), random amplified polymorphic DNA (RAPD), and isozyme loci using a three-generation pedigree prepared for genetic analysis of heartwood color. A total of 128 RFLP (123 cDNA and 5 genomic probes), 33 RAPD, 2 isozyme, and 1 morphological (dwarf) loci segregated in 73 progeny. Of the 164 segregating loci, 145 loci were distributed in 20 linkage groups. Of these loci, 91 with confirmed map positions were assigned to 13 linkage groups, covering a total of 887.3 cM. A clustering of markers with distorted segregation was observed in 6 linkage groups. In the four clusters, distortions with a reduction in the number of homozygotes from one parent only were found.
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  • 44
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    Theoretical and applied genetics 91 (1995), S. 62-67 
    ISSN: 1432-2242
    Keywords: Brassica napus ; Resynthesized rapeseed ; Genetic distance ; Isozymes ; Allozymes ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract It has frequently been suggested to use the resynthesis of rapeseed (Brassica napus) from B. campestris and B. oleracea to broaden its genetic base. The objective of the present study is twofold: (1) to compare the genetic variation within resynthesized rapeseed with a world-wide collection of oilseed rape cultivars, and (2) to compare genetic distances estimated from RFLP markers with distances estimated from a relatively small number of allozyme markers. We investigated 17 resynthesized lines and 24 rapeseed cultivars. Genetic distances were estimated either based on the electrophoresis of seven allozymes, with a total of 38 different bands, or based on RFLP data of 51 probe/enzyme combinations, with a total of 355 different bands. The results of allozyme and RFLP analyses agreed reasonably well. Genetic distances, estimated from two independent sets of RFLP data with 25 and 26 probe/enzyme combinations respectively, were highly correlated; hence about 50 RFLP markers are sufficient to characterize rapeseed material with a large genetic diversity. The cultivars were clustered into three groups: (1) spring rapeseed of European and Northern American origin, (2) winter rapeseed of European and Northern American origin, and (3) rapeseed of Asian origin. Several of the resynthesized rapeseed lines were similar to European winter rapeseed cultivars, whereas others had quite unique patterns. It is concluded, that resynthesized rapeseed is a valuable source for broadening the genetic variation in present breeding material of Brassica napus. However, different lines differ widely in their suitability for this purpose.
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  • 45
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    Theoretical and applied genetics 91 (1995), S. 439-447 
    ISSN: 1432-2242
    Keywords: Chrysanthemum ; RAPD ; DNA fingerprint ; RFLP ; Stability
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    Topics: Biology
    Notes: Abstract Several techniques of DNA analysis were applied to identify chrysanthemum cultivars. Unrelated cultivars could be distinguished by using RAPDs (random amplified polymorphic DNAs), inter-SSR (simple sequence repeat) PCR (polymerase chain reaction), hybridization-based DNA fingerprinting, as well as RFLPs (restriction fragment length polymorphisms). Cultivars with different flower colours and belonging to one family, i.e. vegetatively derived from 1 cultivar, appeared to have the same DNA fragment patterns, whichever technique was applied. The absence of polymorphisms between different accessions of the same cultivar indicated a high stability of the observed patterns.
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  • 46
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    Theoretical and applied genetics 91 (1995), S. 947-955 
    ISSN: 1432-2242
    Keywords: RFLP ; Genetic map ; Polyploids ; Tall fescue ; Molecular marker
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Genetic mapping using molecular markers such as restriction fragment length polymorphisms (RFLPs) has become a powerful tool for plant geneticists and breeders. Like many economically important polyploid plant species, detailed genetic studies of hexaploid tall fescue (Festuca arundinacea Schreb.) are complicated, and no genetic map has been established. We report here the first tall fescue genetic map. This map was generated from an F2 population of HD28-56 by ‘Kentucky-31’ and contains 108 RFLP markers. Although the two parental plants were heterozygous, the perennial and tillering growth habit, high degree of RFLP, and disomic inheritance of tall fescue enabled us to identify the segregating homologous alleles. The map covers 1274 cM on 19 linkage groups with an average of 5 loci per linkage group (LG) and 17.9 cM between loci. Mapping the homoeologous loci detected by the same probe allowed us to identify five homoeologous groups within which the gene orders were found to be generally conserved among homoeologous chromosomes. An exception was homoeologous group 5, in which only 2 of the 3 homoeologous chromosomes were identified. Using 12 genome-specific probes, we were able to assign several linkage groups to one of the three genomes (PG1G2) in tall fescue. All the loci detected by the 11 probes specific to the G1 and/or G2 genomes, with one exception, identified loci located on 4 chromosomes of two homoeologous groups (LG2a, LG2c, LG3a, and LG3c). A P-genome-specific probe was used to map a locus on LG5c. Comparative genome mapping with maize probes indicated that homoeologous group 3 and 2 chromosomes in tall fescue corresponded to maize chromosome 1. Difficulties and advantages of applying RFLP technology in polyploids with high levels of heterozygosity are discussed.
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  • 47
    ISSN: 1432-2242
    Keywords: Brassica napus ; RFLP ; Erucic acid genes ; Oil content ; QTL mapping
    Source: Springer Online Journal Archives 1860-2000
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    Notes: Abstract A F1 microspore-derived DH population, previously used for the development of a rapeseed RFLP map, was analysed for the distribution of erucic acid and seed oil content. A clear three-class segregation for erucic acid content could be observed and the two erucic acid genes of rapeseed were mapped to two different linkage groups on the RFLP map. Although the parents of the segregating DH population showed no significant difference in seed oil content, in the DH population a transgressive segregation in oil content was observed. The segregation closely followed a normal distribution, characteristic of a quantitative trait. Using the program MAPMAKER/QTL, three QTLs for seed oil content could be mapped on three different linkage groups. The additive effects of these QTLs explain about 51% of the phenotypic variation observed for this trait in the DH population. Two of the QTLs for oil content showed a close association in location to the two erucic acid genes, indicating a direct effect of the erucic acid genes on oil content.
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  • 48
    ISSN: 1617-4623
    Keywords: Wheat ; Rice ; Maize ; RFLP ; Synteny
    Source: Springer Online Journal Archives 1860-2000
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    Notes: Abstract The development of RFLP linkage maps in hexaploid and diploid oat allows us to study genetic relationships of these species at the DNA level. In this report, we present the extension of a previously developed diploid oat map (Avena atlantica x A. hirtula) and its molecular-genetic relationships with wheat, rice and maize. Examination of 92–99% of the length of the oat genome map with probes common to Triticeae species, rice or maize showed that 84, 79 and 71%, respectively, was conserved between these species and oat. Generally, the orders of loci among chromosomes homoeologous to oat chromosomes A and D were the most conserved and those of chromosomes homoeologous to oat chromosome G were the least conserved. Conservation was observed for blocks ranging from whole chromosomes 101 cM long to small segments 2.5 cM long containing two loci. Comparison of the homoeologous segments of Triticeae, rice and maize relative to oat indicated that certain regions have been maintained in all four species. The relative positions of major genes governing traits such as seed storage proteins and resistance to leaf rusts have been conserved between cultivated oat and Triticeae species. Also, the locations of three vernalization/or photo-period response genes identified in hexaploid oat correspond to the locations of similar genes in homoeologous chromosomes of wheat, rice or maize. The locations of the centromeres for six of the seven oat chromosomes were estimated based on the homoeologous segments between oat and Triticeae chromosomes.
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  • 49
    ISSN: 1617-4623
    Keywords: Oat ; Rice ; Maize ; RFLP ; Synteny
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    Notes: Abstract Conventionally, the genetics of species of the family Gramineae have been studied separately. Comparative mapping using DNA markers offers a method of combining the research efforts in each species. In this study, we developed consensus maps for members of the Triticeae tribe (Triticum aestivum, T. tauschii, andHordeum spp.) and compared them to rice, maize and oat. The aneuploid stocks available in wheat are invaluable for comparative mapping because almost every DNA fragment can be allocated to a chromosome arm, thus preventing erroneous conclusions about probes that could not be mapped due to a lack of polymorphism between mapping parents. The orders of the markers detected by probes mapped in rice, maize and oat were conserved for 93, 92 and 94% of the length of Triticeae consensus maps, respectively. The chromosome segments duplicated within the maize genome by ancient polyploidization events were identified by homoeology of segments from two maize chromosomes to regions of one Triticeae chromosome. Homoeologous segments conserved across Triticeae species, rice, maize, and oat can be identified for each Triticeae chromosome. Putative orthologous loci for several simply inherited and quantitatively inherited traits in Gramineae species were identified.
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  • 50
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    Aquatic ecology 29 (1995), S. 245-255 
    ISSN: 1573-5125
    Keywords: phosphorus ; sediments ; estuary
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    Notes: Abstract The Great Ouse estuary in southern England is a macrotidal estuary with rather coarse sediment. Two intertidal sites were sampled five times over the year at low tide. The sediments are suboxic, organic poor (approximately 1.5% organic carbon). They are composed mainly of detrital quartz and feldspar with some calcite. At both sites the total phosphorus in the sediments ranges from 0.03 – 0.12% dry weight and total iron from 0.42–1.22% dry weight. Of the total phosphorus 20% is organic and 80% is inorganic of which 10% is water extractable. Total iron and phosphorus correlate well and the ratio of iron:phosphorus is 8.4 which is similar to that found when phosphorus is adsorbed by iron oxyhydroxides, suggesting that iron oxyhydroxides are an important substrate for phosphorus sorption in these sediments. Fluxes of phosphorus from the sediment to the overlying water, measured in cores incubated in the laboratory, are low and show no seasonality. The sodium concentration in the porewaters at both sites is variable suggesting that there is movement of water through the sediment to depths of at least 20 cm. This is borne out by variable phosphorus, iron and phosphorus concentrations in the porewaters and ill defined redox zones in the sediments.
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  • 51
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    Molecular breeding 1 (1995), S. 273-282 
    ISSN: 1572-9788
    Keywords: bias ; doubled-haploid ; QTL reliability ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Several statistical methods which employ multiple marker data are currently available for the analysis of quantitative trait loci (QTL) in experimental populations. Although comparable estimates of QTL location and effects have been obtained by these methods, using simulated and real data sets, their accuracy and reliability have not been extensively investigated. The present study specifically examines the merit of using F2 and doubled haploid populations for locating QTL and estimating their effects. Factors which may affect accuracy and reliability of QTL mapping, such as the number and position of the markers available, the accuracy of the marker locations and the size of the experimental population used, are considered. These aspects are evaluated for QTL of differing heritabilities and locations along the chromosome. A population of 300 F2 individuals and 150 doubled haploid lines gave estimates of QTL position and effect which were comparable, albeit extremely unreliable. Even for a QTL of high heritability (10%), the confidence interval was 35 cM. There was little increase in reliability to be obtained from using 300, rather than 200, F2 individuals and 100 doubled haploid lines gave similar results to 150. QTL estimates were not significantly improved either by using the expected, rather than the observed, marker positions or by using a dense map of markers rather than a sparse map. A QTL which was asymmetrically located in the linkage group resulted in inaccurate estimates of QTL position which were seriously biassed at low heritability of the QTL. In a population of 300 F2 individuals the bias increased from 4 cM to 20 cM, for a QTL with 10% and 2% heritability respectively.
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  • 52
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    Hydrobiologia 297 (1995), S. 1-9 
    ISSN: 1573-5117
    Keywords: phosphorus ; nutrient deficiency ; phosphate ; phosphatase
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    Topics: Biology
    Notes: Abstract Mesocosms (1.3 m3) in a eutrophic reservoir were treated with NH4Cl (160 µmol l−1), KH2PO4 (10 µmol l−1) or nothing (control) and sampled after 8 days to determine how P dynamics are related to relative P deficiency. Photosynthetic rate and chlorophyll data suggested P deficiency in ammonium and control mesocosms and no P deficiency with phosphate additions. Biologically available P (BAP) and the ratio of BAP to soluble reactive P (SRP) decreased as P deficiency increased. Log of short-term uptake as a function of log of phosphate concentration exhibited an approximate linear increase in control and N mesocosms; substrate dependent uptake kinetics showed no saturation up to 500 µmol l−1 phosphate. Uptake was independent of phosphate concentration (saturated) in samples from the 10 µmol l−1 P enriched mesocosm. This suggests that P uptake may not saturate at ecologically realistic values in short term experiments under P deficient conditions. Particle associated phosphatase activity was greatest in the 0.2–3 µm size-fraction in all mesocosms, but total activity varied little with P deficiency.
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    Hydrobiologia 300-301 (1995), S. 391-398 
    ISSN: 1573-5117
    Keywords: phytoplankton ; phosphorus ; 31P-NMR ; in situ sample fixation ; maximum entropy method
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    Topics: Biology
    Notes: Abstract A new fixation method was developed for the Nuclear Magnetic Resonance (NMR) study of natural phytoplankton samples collected in situ. To test NMR reliability, a Chlorella continuous culture was used in a phosphorus deficiency recovery experiment. The method was then applied to natural metalimnetic cyanobacterial plankton. The maximum Entropy Method was used to enhance the generally poor signal to noise ratio resulting from the low amount of available material and NMR sensitivity. Suggestions are made on how to improve reliability.
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  • 54
    ISSN: 1573-5117
    Keywords: reservoirs ; phosphorus ; sediments ; exchanges ; euthrophication
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    Description / Table of Contents: Résumé Les échanges de phosphore au niveau de l'interface eau-sédiment couplés á la distribution temporelle de divers éléments chimiques et biologiques ont été étudiés dans divers réservoirs de niveaux trophiques différents, au Maroc et en France. Nos résultats mettent clairement en évidence une influence directe de l'environnement physico-chimique, de la nature géologique des bassins versants et de l'état trophique du lac sur la dynamique du phosphore au sein de cette interface. De plus, il apparait que dans le lac hypereutrophe de Villerest (Roanne, France), le phosphore est majoritairement complexé au fer alors que dans les retenues marocaines, ce sont les complexes phosphore-calcium qui prédominent. Nous préconisons un contrôle drastique des apports en phosphore á travers l'installation et la multiplication d'unités de déphosphatation afin d'éviter d'une part, la prolifération massive de la Cyanobactérie Microcystis aeruginosa á Villetest (Aleya et al., 1994) et d'autre part la dissociation des complexes phhosphore-calcium au sein des retenues marocaines avec libération de phosphore biodisponible.
    Notes: Abstract Phosphorus exchange at the sediment-water interface coupled with several parameters were assessed in several reservoirs with geologically different catchment basins and different trophic status in Morocco and France. The results showed that these exchanges were regulated by a combination of factors: physical chemical variability of the environment, the geological composition of catchment basins and the trophic status of the lake. In the hypereutrophic Villerest, iron-bound phosphorus is the major form of phosphorus trapped by the sediment whereas, in Moroccan reservoirs, calcium-bound phosphorus prevailed. We suggest that a drastic control of phosphorus inputs into the waters must be done through a large program of dephosphatization of tributaries to avoid Microcystis aeruginosa bloom formation in Villerest (Aleya et al., 1993) and calcium-bound phosphorus dissociation in Moroccan reservoirs with upward release of bioavailable phosphorus.
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  • 55
    ISSN: 1573-5117
    Keywords: phosphorus ; chemical fractionation ; synthetic P compounds ; minerals ; sediments ; eutrophic lakes
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    Notes: Abstract Phosphorus (P) reactivity and bioavailability in lake sediments may be determined by different forms of P and their distribution. Reactive and nonreactive P pools in two shallow subtropical lake sediments (Lake Apopka and Lake Okeechobee) were determined by sequential chemical extraction using 1 M NH4Cl (pH 7.0), 0.1 M NaOH, and 0.5 M HCl, reportedly representing loosely-bound P, Fe- and Al-bound P, and Ca- and Mg-bound P respectively. The sequential P fractionation was tested using pure P compounds and selected P minerals. The scheme effectively separated Fe- and Al-P from Ca-P fractions in an FePO4-AlPO4-Ca3(PO4)2 mixture. Readily available P, defined as the sum of water-soluble P and NH4Cl-extractable P, in the unconsolidated gyttja (UCG) layer (surface 0–30 cm) of Lake Apopka sediments accounted for 10.1 to 23.7% of total P (TP). This sediment P fraction constitutes a large reservoir which may act as a source of P to the overlying water. In subsurface marl layers (134–148 cm depth) of Lake Apopka, NH4Cl-P constituted 〈I% of TP whereas Ca-Mg-bound P and highly resistant P (residual P) accounted for 35 and 64% of TP respectively. Results suggest that 1 M NH4Cl (pH 7.0) and 0.5 M HCl, reported to dissolve carbonate-bound P and Ca-Mg-bound P, respectively, may not be extracting distinct pools of P. Lake Okeechobee mud sediments had low concentrations of readily available P (2% of TP) and were dominated by Ca-Mg-bound P (HCl-P≥58% of TP). Sediments in the littoral and peat areas of Lake Okeechobee, however, had high concentrations of readily available P (9.7 and 17.4% of TP respectively); hence, these sediments may play an important role in internal P cycling. The NaOH-P (Fe-Al-P) concentrations for Lake Okeechobee sediments were strongly correlated with amorphous and poorly-crystalline Fe (p〈 0.01), suggesting that some P reactions in these sediments may be sensitive to changes in physico-chemical conditions such as redox potential and sediment resuspension.
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  • 56
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    Hydrobiologia 302 (1995), S. 179-188 
    ISSN: 1573-5117
    Keywords: river ; diatom ; index ; nitrogen ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The performance of five types of benthic diatom index (four quantitative methods and a zoning system) to evaluate water quality was tested in rivers in England and Scotland. Significant correlations were observed between the four quantitative indices examined. In the case of SPI (Specific Pollution sensitivity Index) and GDI (Generic Diatom Index), over 80% of the variation in GDI was explained by a bivariate regression on SPI. Samples taken from six sites at four different times of year showed no significant influence of season on any of the indices. The zoning system led to a similar assessment of organic pollution as the SPI and GDI indices , but it was sometimes difficult to determine the zone. This method showed no obvious advantages over the quantitative indices. The high correlation between values for indices based on species and those on genera suggests that for routine monitoring, recognition to the generic level is adequate.
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  • 57
    ISSN: 1573-5117
    Keywords: Bangladesh ; deepwater rice ; flood ; nitrogen ; phosphorus ; biomass ; damage
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Measurements of the biomass of deepwater rice plants at sites on the three major floodplains in Bangladesh (Ganges, Jamuna, Meghna) with and without fertilizer treatment were made from shortly before the arrival of flood water (June) until it was receding (mid-October). There was usually an approximately linear increase in biomass per unit area with time until September, but subsequently there were marked differences in response, ranging from a continued steady increase to a sharp drop. Difference in the flood pattern were an important factor influencing changes in biomass and productivity. Net productivity (biomass change) measured at different stages in growth ranged from - 73 to + 220 kg ha-1 d-1 in unfertilized fields and from - 141 to + 430 kg ha-1 d-1 in fertilized fields, with mean values of + 130 in unfertilized and + 160 kg ha-1 d-1 in fertilized fields. However,grain yield reflected the increased biomass in only one of four experiments.
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    Hydrobiologia 295 (1995), S. 311-321 
    ISSN: 1573-5117
    Keywords: mangrove forest ; nitrogen ; nutrient budgets ; phosphorus ; shrimp pond effluent
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Preliminary estimates of the ratio of mangrove forest: shrimp pond area necessary to remove nutrients from shrimp pond effluent are made using budgets of nitrogen and phosphorus output for semi-intensive and intensive shrimp ponds combined with estimates of total net primary production in Rhizophora-dominated mangrove forests in tropical coastal areas. If effluent is delivered directly to mangrove forest plots, it is estimated that, depending on shrimp pond management, between 2 and 22 hectares of forest are required to filter the nitrogen and phosphorus loads from effluent produced by a 1 hectare pond. While such ratios may apply to small scale, integrated shrimp aquaculture — mangrove forestry farming systems, the variability in mangrove hydrodynamics makes it difficult to apply such ratios at a regional scale. Before mangroves can be used to strip shrimp pond effluent more research is required on the effects that high ammonia and particulate organic matter loads in pond effluent have on nutrient transformations in mangrove sediments and on forest growth.
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  • 59
    ISSN: 1573-5117
    Keywords: Deep lake ; eutrophication ; restoration ; mathematical modeling ; phosphorus ; temperature
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This paper demonstrates how mathematical modeling can contribute to improve understanding of lake behavior. Since the 60's Lake Bourget, one of the largest in France, had been suffering from eutrophication which was checked in 1980 by the diversion of the main sewers entering the lake. A research program was implemented between 1987 and 1990, including an on-site sampling campaign conducted concurrently with thermal and biogeochemical modeling of lake behavior. The model helped provide a better understanding of the ecosystem, displaying some processes hitherto misunderstood: (1) Winter overturn does not reach the bottom of the water column when the weather is mild. This leads to a incomplete reoxygenation of the hypolimnion and to redox conditions inducing the release of orthophosphate from the sediment, (2) Grazing by herbivorous zooplankton is getting more important in the control of spring algal growth as eutrophication of the lake regresses, (3) Settling of particulate phosphorus seems a complex and very important process in Lake Bourget, showing high sedimentation rates for particulate mineral phosphorus.
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    Molecular genetics and genomics 248 (1995), S. 278-286 
    ISSN: 1617-4623
    Keywords: Flowering time ; Vernalization ; Quantitative trait loci ; Arabidopsis ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Quantitative trait loci (QTL) analyses based on restriction fragment length polymorphism maps have been used to resolve the genetic control of flowering time in a cross between twoArabidopsis thaliana ecotypes H51 and Landsbergerecta, differing widely in flowering time. Five quantitative trait loci affecting flowering time were identified in this cross (RLN1-5), four of which are located in regions containing mutations or loci previously identified as conferring a late-flowering phenotype. One of these loci is coincident with theFRI locus identified as the major determinant for late flowering and vernalization responsiveness in theArabidopsis ecotype Stockholm.RLN5, which maps to the lower half of chromosome five (between markers mi69 and m233), only affected flowering time significantly under short day conditions following a vernalization period. The late-flowering phenotype of H51 compared to Landsbergerecta was due to alleles conferring late flowering at only two of the five loci. At the three other loci, H51 possessed alleles conferring early flowering in comparison to those of Landsbergerecta. Combinations of alleles conferring early and late flowering from both parents accounted for the transgressive segregation of flowering time observed within the F2 population. Three QTL,RLN1,RLN2 andRLN3 displayed significant genotype-by-environment interactions for flowering time. A significant interaction between alleles atRLN3 andRLN4 was detected.
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  • 61
    ISSN: 1617-4623
    Keywords: Leaf rust ; RFLP ; Sequence-tagged-site (STS) ; Wheat ; Resistance gene
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    Topics: Biology
    Notes: Abstract The objective of this study was to characterize the leaf rust resistance locusLr1 in wheat. Restriction fragment length polymorphism (RELP) analysis was performed on the resistant lineLr1/6*Thatcher and the susceptible varieties Thatcher and Frisal, as well as on the segregating F2 populations. Seventeen out of 37 RFLP probes mapping to group 5 chromosomes showed polymorphism betweenLr1/6*Thatcher and Frisal, whereas 11 probes were polymorphic between the near-isogenic lines (NILs)Lr1/6*Thatcher and Thatcher. Three of these probes were linked to the resistance gene in the segregating F2 populations. One probe (pTAG621) showed very tight linkage toLr1 and mapped to a single-copy region on chromosome 5D. The map location of pTAG621 at the end of the long arm of chromosome 5D was confirmed by the absence of the band in the nulli-tetrasomic line N5DT5B of Chinese Spring and a set of deletion lines of Chinese Spring lacking the distal part of 5DL. Twenty-seven breeding lines containing theLr1 resistance gene in different genetic backgrounds showed the same band asLr1/6*Thatcher when hybridized with pTAG621. The RFLP marker was converted to a sequence-tagged-site marker using polymerase chain reaction (PCR) amplification. Sequencing of the specific fragment amplified from both NILs revealed point mutations as well as small insertion/deletion events. These were used to design primers that allowed amplification of a specific product only from the resistant lineLr1/6*Thatcher. This STS, specific for theLr1 resistance gene, will allow efficient selection for the disease resistance gene in wheat breeding programmes. In addition, the identification of a D-genome-specific probe tightly linked toLr1 should ultimately provide the basis for positional cloning of the gene.
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  • 62
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    Plant and soil 168-169 (1995), S. 313-317 
    ISSN: 1573-5036
    Keywords: growth ; internal cycling ; partitioning ; phosphorus ; 32P ; Sitka spruce
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The availability of phosphorus in many UK forest soils limits growth of Sitka spruce (Picea sitchensis (Bong.) Carr.). Efficient cycling of P within such systems is therefore necessary for sustained tree growth. Internal cycling of P is an important component of the overall P cycle in forests and the current work aims to quantify the impact of P nutrition on internal cycling and seasonal growth of Sitka spruce. Two-year old seedlings of Sitka spruce were grown in sand culture in the glasshouse for one year. Two treatments were imposed in which trees received either a complete nutrient solution from which P was excluded (-P) or one in which P was applied as labelled 32P (+P). Internal cycling of P was measured directly in plants which had received no P and by difference in those which received 32P. The contrasting P treatments produced an eight-fold difference in P content and a three-fold difference in tree growth between May and October. Root:shoot ratios increased during the growing season from 0.29 to 0.38 and from 0.29 to 0.52 in +P and-P treatments, respectively. In both treatments P was translocated from old shoots to support new shoot growth. P supply did not affect the amount of P remobilised but there was evidence that the rate of remobilisation may have been affected. The partition of remobilised P was affected by current P supply and differed from the partition of current P uptake. Results are compared to those from studies of growth and internal cycling of nitrogen in Sitka spruce.
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    Plant and soil 176 (1995), S. 95-100 
    ISSN: 1573-5036
    Keywords: isotopically exchangeable ; lupin ; phosphorus ; uptake
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract White lupin (Lupinus albus L. var. Ultra) and soybean (Glycine max L. var. Elgin) were grown in an acidic soil low an available phosphorus (P) to investigate their different capacities to acquire soil phosphorus. Experiments done in the controlled environment of a biotron were supplemented with four separate greenhouse experiments. Lupin and soybean were grown in monoculture and intercropped on a soil with low available P that was labeled with carrier-free 32P as phosphate. Lupin had significantly lower values of specific activity of 32P and higher values of isotopically exchangeable P than soybean in all cases. The results show that lupin utilizes soil P from a normally non-labile pool of soil P that is not utilized by soybean.
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    Plant and soil 176 (1995), S. 161-169 
    ISSN: 1573-5036
    Keywords: Casuarina cunninghamiana ; Frankia ; nitrogen fixation ; nodulation ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A study was conducted to investigate the effects of phosphorus on nodule formation and function in the Casuarina-Frankia symbiosis. The effects of P on growth and survival of Frankia in the rhizosphere was assessed by examing Frankia growth and survival in flasks of basal nutrient solution. There was no growth in the nutrient solution during the experimental period. However, the viability of Frankia in the nutrient solution without P supply was half that of the initial level, whereas, with P supply, there was only a minor decline during the first week. In a growth pouch experiment, supplying P increased plant and nodule growth, irrespective of P status of the inoculant Frankia culture. There were no effects of P status on any growth or nodulation parameters measured when the inoculants had been standardized on the basis of viability. In a split root experiment, Frankia inoculation and application of P together or separately did not cause any significant difference. This suggests that growth and nodulation respond only to total P supply. Increasing P from 0.1 to 10 μM significantly increased plant growth but not N concentrations. Both nitrogen-fixation and nitrate supported growth were strongly increased as P increased from 0.1 to 1.0 μM. This study indicates that P deficiency limits the growth of host plants more severely than nitrogen fixation processes and P deficiency on nodulation and symbiotic nitrogen fixation in Casuarina cunninghamiana operated indirectly via reducing host plant growth.
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  • 65
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    Plant and soil 176 (1995), S. 171-181 
    ISSN: 1573-5036
    Keywords: aluminium ; iron ; phosphorus ; relative growth rate ; relative uptake rate ; steady state
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The relative uptake rates of N, P, K, S, Ca, Mg, Fe, Mn, Zn, Cu, and Al were estimated in beech seedlings pot cultured in the field in six acid soils (treatments). The relative uptake rates were compared with the relative growth rates. The relative uptake rates of N, K and Ca agreed well with the growth rates of the seedlings irrespective of widely differing soil conditions (acid sand-clayey till, pH 4–6). The relative uptake rates of P, Fe, and Al differed from that predicted by the growth rate. The uptake rates of Fe and Al were highest at the lowest growth rates, and the P uptake rate was lower than the growth rate in these treatments. Thus the P availability probably limited growth in an eluvial (E) horizon of a podzol, and possibly in the illuvial (B) horizon of a podzol and in an acid clayey till (Dystric Cambisol). Low P uptake was associated with a tendency towards higher relative root growth rates. In terms of the concept of steady state nutrition the high relative root growth rate in some treatments may be interpreted as an acclimation to low P supply. The P limitation seemed to be related to interactions among Fe, Al and organic compounds of the soil solution.
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  • 66
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    Euphytica 86 (1995), S. 103-110 
    ISSN: 1573-5060
    Keywords: Korean weedy rice ; Oryza sativa ; RFLP ; classification ; weedy rice ; genetic similarity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The genetic characteristics and classification of 24 strains of Korean weedy rice, two strains of foreign red rice, three Japonica cultivars, one Tongil cultivar and one Indica cultivar (Oryza sativa L.) were investigated at the DNA level using the restriction fragment length polymorphism (RFLP) method. Eighty-three random combinations between six restriction enzymes and forty genomic DNA probes (RG# and KR#) were assayed. Thirty-seven (92.5%) out of the forty probes used showed polymorphisms among the 31 accessions assayed. A high level of polymorphism was found between short and long grain type Korean weedy rices, whereas fewer polymorphisms were presented among strains within each grain type. A dendrogram summarizing genetic similarity coefficients among thirty-one accessions was constructed based on their DNA polymorphisms. The Korean weedy rice strains were classified into two groups identical to the short and long grain types classified by morphological and physiological characters. From the RFLP analysis, it was deduced that the short grain strains of Korean weedy rice belonged to Japonica, while the long grain strains were closer to Indica than to Japonica, and were differentiated into a local ecotype surviving in the growth conditions in the southern part of the Korean peninsula.
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  • 67
    ISSN: 1573-5036
    Keywords: acid-subsoils ; aluminium ; phosphorus ; root growth ; velvet bean
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Previous laboratory experiments showed that velvet bean Mucuna pruriens is moderately tolerant to the presence of Al (up to 185 µM) in the root environment, but that it only develops a shallow root system in acid soils. Field experiments showed that Mucuna can tolerate acid subsoil conditions in a homogeneous root environment, but avoids subsoil if topsoil is present. Subsequent split-root experiments with a recirculating nutrient solution showed that this subsoil avoidance may be based on an Al avoidance mechanism in the root system. This Al avoidance mechanism, however, was not evident when phosphorus (P) supply to the whole plant was adequate. We thus hypothesized that surface application of P may help to overcome Al avoidance in the subsoil. In a field experiment on an ultisol in Lampung (Indonesia), only a moderate increase in aboveground biomass production was found for a wide range of P application rates, although the soil was low in available P, and the P adsorption isotherm was very steep. An increased P status of the topsoil and an increased P concentration in the aboveground biomass (from 50 to 75 mmol kg-1) had no effect on root development in the subsoil.
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  • 68
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    Plant and soil 176 (1995), S. 101-105 
    ISSN: 1573-5036
    Keywords: arbuscular mycorrhiza ; “criollo” ; growth ; inoculation ; maize ; mycorrhizal ; native ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract We tested the effect of two single species inocula and a mixed inoculum of the native population of arbuscular mycorrhizal (AM) fungi on the growth response of “criollo” maize (Zea mays L.). To determine the inocula that produced the highest response on maize growth, we conducted a greenhouse experiment at 3 levels of P fertilization (0, 40 and 80 kg ha−1). Inoculation with Glomus mosseae (Nicolson and Gerdemann) Gerd. and Trappe (LMSS) produced the greatest shoot growth rates at the two lowest P fertilization levels. Inoculation with Acaulospora bireticulata Rothwell and Trappe (ABRT) and the native population (NP) resulted in similar shoot growth rates at all P levels. These rates were higher than the non-mycorrhizal control rate at the lowest P level but lower than the control at the highest P level. Also, ABRT and NP had significantly lower shoot growth rates than the inoculation treatment with G. mosseae at all P levels. The non-mycorrhizal control had the lowest growth rate at the lowest P level but its growth rate increased linearly with increased P fertilization. Inoculation with G. mosseae and A. bireticulata produced similar colonization rates which were lower than the native population colonization rate. There was no correlation between colonization and shoot growth rates.
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  • 69
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    Plant and soil 176 (1995), S. 255-262 
    ISSN: 1573-5036
    Keywords: carbon ; cocksfoot grass ; mineralisation ; nitrogen ; phosphorus ; radiata pine ; sulphur
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Radiata pine (Pinus radiata) and cocksfoot grass (Dactylis glomerata) were grown in small pots containing grassland soils collected from seven sites in the South Island montane zone. After one year the overall mean dry matter yield of pine exceeded that of grass by a factor of 2.6, and uptake of all nutrients by pine was substantially greater. Mean soil pH was 0.3 units lower after pine growth than after grass. Organic carbon (C), total nitrogen (N), and organic phosphorus (P) levels were 15–19% lower after pine, while total P was 7% lower. Despite greater nutrient uptake by pine, mean mineralisable N and sulphate sulphur (S) levels in the soil were 500% and 200% higher respectively after pine growth than after grass. Inorganic and Bray-2 P levels were 10% and 20% higher respectively. Grass obtained almost all of its P from the inorganic pool, while pine obtained P from both inorganic and organic pools, though mostly from the latter. It is concluded that the differences observed in C, N, and P concentrations in soil indicate higher rates of mineralisation of soil organic matter in the presence of radiata pine than in the presence of cocksfoot grass. Possible implications for pastoral hill land use in New Zealand are discussed. It is suggested that pines incorporated into farming systems either on a rotational basis, or in wide-spaced agroforestry regimes, may be able to increase the rate of mineralisation of organic P, and also of N and S, and increase their availability to pasture species.
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  • 70
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    Plant and soil 176 (1995), S. 317-324 
    ISSN: 1573-5036
    Keywords: chelate ; copper ; deficiency ; genotypic differences ; iron ; manganese ; phosphorus ; Triticum ; zinc
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ten Triticum aestivum and two Triticum turgidum conv. durum genotypes differing in Zn efficiency were grown in chelate-buffered nutrient solution at Zn supplies ranging from deficient to sufficient (free Zn activities from 2 to 200 pM, pZn from 11.7 to 9.7). Correlation between the rate of Zn uptake and the Zn efficiency ranking was poor. Uptake of Zn by all genotypes increased linearly with an increase in solution Zn activities, with a slight saturation apparent at 200 pM. Relative amounts of Zn and Fe transported to shoots increased with duration of growth and at higher supply of Zn. With an increase in solution Zn activities, uptake rates of Fe, Mn and Cu dropped in Zn-efficient genotypes and increased in Zn-inefficient ones. While shoot concentrations of Fe did not differ between Zn-efficient and inefficient genotypes at ≥10 pM Zn activity, root Fe concentrations were around 3-fold higher in Zn-efficient genotypes at 2 pM Zn activity. All genotypes accumulated high amounts of P in shoots after 22 d of growth at deficient Zn supply. It is concluded that nutrient interactions, especially at deficient Zn supply, may be influential in determining the level of Zn efficiency of wheat genotypes.
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  • 71
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    Plant and soil 168-169 (1995), S. 243-248 
    ISSN: 1573-5036
    Keywords: carbohydrate ; ectomycorrhiza ; ergosterol ; extramatrical mycelium ; nitrogen ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Nutrient uptake by forest trees is largely dependent on their associated ectomycorrhizal fungi. The presence of extramatrical mycelium produced by ectomycorrhizal fungi allows trees to exploit a larger soil volume. In this paper the effects of macronutrients on the production of extramatrical mycelium are reviewed. It is concluded that elevated levels of nitrogen and, to some extent, phosphorus strongly inhibit the development of extramatrical mycelium. A deficiency of phosphorus, on the other hand, stimulates ectomycorrhizal development. Low levels of phosphorus may offset the negative influence of nitrogen, indicating that the nitrogen effect is indirect. No other macronutrients have been shown to affect extramatrical mycelium significantly, however, very few studies have been made. To explain reduced ectomycorrhizal development under conditions of high N availability, it has been suggested that the host would allocate less carbohydrate to the mycobiont under such conditions owing to a greater demand for carbon by growing shoots. In the present paper an alternative explanation is suggested: The fungus is forced to take up all available nitrogen and must therefore consume the available carbohydrate in order to assimilate it. The surplus of carbohydrates after nitrogen assimilation can then be used to produce fungal mycelium and fruit bodies. However, the total allocation of host carbohydrate to the mycorrhizal fungus is not reduced at elevated levels of N supply. In contrast with previous theories, the present one proposes that it is the fungus, rather than the host which adjusts its carbon allocation patterns to the N supply.
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  • 72
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    Plant and soil 175 (1995), S. 31-44 
    ISSN: 1573-5036
    Keywords: lime ; nitrogen ; phosphorus ; radiata pine ; soil acidity ; stem deformity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plantations of radiata pine (P. radiata D.Don) on soils previously under legume based pastures have a high incidence of stem deformity compared with forest soils. A comparison of soil properties and tree nutrition of 5 to 7 year-old radiata pine on former pastures in the first part of the study showed that stem deformity was strongly correlated with mineralisation of soil N and in particular with nitrification. Other soil properties that have changed as a result of pasture improvement, e.g. pH, available P and Mn, were only partially correlated with stem deformity. In the second part of the study, the role of N availability and other soil properties in the expression of deformity was further investigated in a separate field experiment on soils formerly under native eucalypt forest, tobacco cropping, and improved pasture. Young radiata pine plantings were treated with lime, phosphorus, and nitrogen applied as urea and sodium nitrate. Liming increased soil pH by around 1.5 units, raised exchangeable Ca2+ and decreased available Mn. Soil mineral N content was only marginally affected by liming. Superphosphate increased soil available P and raised levels of P in foliage. Changes in soil pH, availability of P, Mn, and B did not affect growth or stem deformity at any of the sites. In contrast, application of N fertilisers at 200 and 600 kg N ha-1 increased mineral N content and stimulated nitrification, particularly at the forest site. The high rate of N fertiliser increased basal area at the forest site by 45%, but also raised the level of stem deformity from 12% to 56%. At the tobacco and pasture sites, this treatment did not increase growth and did not significantly raise stem deformity above the already high basic level of deformity (63%). Implications of stem deformity in young plantations of radiata pine on potential utilisation later in the rotation are discussed.
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  • 73
    ISSN: 1573-5036
    Keywords: deficiency ; drought ; field experiment ; irrigation ; phosphorus ; Picea abies ; wood ash
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Increased atmospheric deposition of N might eventually lead to P deficiency. The relation between needle P concentration and acid phosphatase activity in the humus layer was studied during 1990–93 in a Norway spruce stand where the water and N and P supplies had been experimentally manipulated since 1988. Treatments included control (C), yearly application of ammonium sulphate (NS), N-free fertilizer (V), granulated wood ash (A), irrigation (I), drought (D) and water plus nutrients in an “optimum” combination (IF). We found indications of a feed-back mechanism for P, where low concentrations in the needles were associated with increased acid phosphatase activity in the humus layer. Acid phosphatase estimations made during moist soil conditions were much more informative than those made during dry conditions. We further argue that a site-specific “base-line” exists for acid phosphatase activity in the soil, mainly originating from enzymes immobilized in the field, but active in the assay. Increased phosphatase activity, above the base line, was generally found in the A, I and NS treatments, but in some cases also in C. Although P and N concentrations were significantly higher in the IF treatment as compared to the C and the D treatments, the P as fraction of N was 0.10 and thus balanced in all cases. In the A and I treatment P:N was around 0.09, while it was only 0.07 in the NS treatment, mainly due to high N concentrations. The latter treatment thus created an imbalanced situation where P additions most likely would have increased tree growth.
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  • 74
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    Plant and soil 177 (1995), S. 73-83 
    ISSN: 1573-5036
    Keywords: acid sulphate soils ; iron ; Oryza sativa L. ; phosphorus ; temperature ; Vietnam
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Climatic and soil factors are limiting rice growth in many countries. In Vietnam, a steep gradient of temperature is observed from the North to the South, and acid sulphate soils are frequently devoted to rice production. We have therefore attempted to understand how temperature affects rice growth in these problem soils, by comparison with rice grown in nutrient solution. Two varieties of rice, IR64 and X2, were cultivated in phytotrons at 19/21°C and 28/32°C (day/night) for 56 days, after 3 weeks preculture in optimal conditions. Two soils from the Mekong Delta were tested. Parallel with the growing experiments, these two soils were incubated in order to monitor redox potential (E h ), pH, soluble Al and Fe, soluble, and available P. Tillering retardation at 20°C compared to 30°C was similar in nutrient solutions and in soils. The effect of temperature on increasing plant biomass was more marked in solutions than in soils. The P concentrations in roots and shoots were higher at 20°C than at 30°C, to such an extent that detrimental effect was suspected in plants grown in solution at the lowest temperature. The translocation of Fe from roots to shoots was stimulated upon rising temperature, both in solutions and in soils. This led to plant death on the most acid soil at 30°C. Indeed, the accumulation of Fe in plants grown on soils was enhanced by the release of Fe2+ due to reduction of Fe(III)-oxihydroxides. Severe reducing conditions were created at 30°C: redox potential (E h ) dropped rapidly down to about 0 V. At 20°C, E h did not drop below about 0.2 V, which is a value well in the range of Fe(III)/Fe(II) buffering. Parallel to E h drop, pH increased up to about 6–6.5 at 30°C, which prevented plants from Al toxicity, even in the most acid soil. Phosphate behavior was obviously related to Fe-dynamics: more reducing conditions at 30°C have resulted in enhancement of available P, especially in the most acid soil.
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  • 75
    ISSN: 1573-5036
    Keywords: carbon dioxide ; fertilising effect ; greenhouse effect ; N-deposition ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A model of the interacting global carbon and nitrogen cycles (CQUESTN) is developed to explore the possible history of C-sequestration into the terrestrial biosphere in response to the global increases (past and possible future) in atmospheric CO2 concentration, temperature and N-deposition. The model is based on published estimates of pre-industrial C and N pools and fluxes into vegetation, litter and soil compartments. It was found necessary to assign low estimates of N pools and fluxes to be compatible with the more firmly established C-cycle data. Net primary production was made responsive to phytomass N level, and to CO2 and temperature deviation from preindustrial values with sensitivities covering the ranges in the literature. Biological N-fixation could be made either unresponsive to soil C:N ratio, or could act to tend to restore the preindustrial C:N of humus with different N-fixation intensities. As for all such simulation models, uncertainties in both data and functional relationships render it more useful for qualitative evaluation than for quantitative prediction. With the N-fixation response turned off, the historic CO2 increase led to standard-model sequestration into terrestrial ecosystems in 1995AD of 1.8 Gt C yr−1. With N-fixation restoring humus C:N strongly, C sequestration was 3 Gt yr−1 in 1995. In both cases C:N of phytomass and litter increased with time and these increases were plausible when compared with experimental data on CO2 effects. The temperature increase also caused net C sequestration in the model biosphere because decrease in soil organic matter was more than offset by the increase in phytomass deriving from the extra N mineralised. For temperature increase to reduce system C pool size, the biosphere “leakiness” to N would have to increase substantially with temperature. Assuming a constant N-loss coefficient, the historic temperature increase alone caused standard-model net C sequestration to be about 0.6 Gt C in 1995. Given the disparity of plant and microbial C:N, the modelled impact of anthropogenic N-deposition on C-sequestration depends substantially on whether the deposited N is initially taken up by plants or by soil microorganisms. Assuming the latter, standard-model net sequestration in 1995 was 0.2 Gt C in 1995 from the N-deposition effect alone. Combining the effects of the historic courses of CO2, temperature and N-deposition, the standard-model gave C-sequestration of 3.5 Gt in 1995. This involved an assumed weak response of biological N-fixation to the increased carbon status of the ecosystem. For N-fixation to track ecosystem C-fixation in the long term however, more phosphorus must enter the biological cycle. New experimental evidence shows that plants in elevated CO2 have the capacity to mobilize more phosphorus from so-called “unavailable” sources using mechanisms involving exudation of organic acids and phosphatases.
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  • 76
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    Plant and soil 187 (1995), S. 277-288 
    ISSN: 1573-5036
    Keywords: carbon isotopes ; carbon storage ; elevated CO2 ; phosphorus ; rhizodeposition ; root exudation ; soil organic matter
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Atmospheric CO2 concentrations can influence ecosystem carbon storage through net primary production (NPP), soil carbon storage, or both. In assessing the potential for carbon storage in terrestrial ecosystems under elevated CO2, both NPP and processing of soil organic matter (SOM), as well as the multiple links between them, must be examined. Within this context, both the quantity and quality of carbon flux from roots to soil are important, since roots produce specialized compounds that enhance nutrient acquisition (affecting NPP), and since the flux of organic compounds from roots to soil fuels soil microbial activity (affecting processing of SOM). From the perspective of root physiology, a technique is described which uses genetically engineered bacteria to detect the distribution and amount of flux of particular compounds from single roots to non-sterile soils. Other experiments from several labs are noted which explore effects of elevated CO2 on root acid phosphatase, phosphomonoesterase, and citrate production, all associated with phosphorus nutrition. From a soil perspective, effects of elevated CO2 on the processing of SOM developed under a C4 grassland but planted with C3 California grassland species were examined under low (unamended) and high (amended with 20 g m−2 NPK) nutrients; measurements of soil atmosphere δ13C combined with soil respiration rates show that during vegetative growth in February, elevated CO2 decreased respiration of carbon from C4 SOM in high nutrient soils but not in unamended soils. This emphasis on the impacts of carbon loss from roots on both NPP and SOM processing will be essential to understanding terrestrial ecosystem carbon storage under changing atmospheric CO2 concentrations.
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  • 77
    ISSN: 1573-5095
    Keywords: aluminumsulfate ; phosphorus ; vesicular-arbuscular mycorrhizal fungi ; Leucaena leucocephala ; reforestation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The effect of 3 species of vesicular-arbuscular mycorrhizal (VAM) fungi on the growth of Leucaena leucocephala (Lam.) De Wit. in a phosphorus-deficient and aluminumsulfate (AIS)-treated medium was investigated in a screenhouse experiment. Plant height, root length, nodulation, phosphorus uptake and nitrogen fixation were used as indices of plant performance. While there were significant differences among mycorrhizal plants with respect to these indices, they outperformed their non-mycorrhizal counterparts in all respects except in nitrogen content. Of the 3 mycorrhizal species studied, Glomus etunicatum (Becker and Gerd) was the most efficient, followed by Glomus fasciculatum (Thaxter) Gerd and Trappe, and finally, Gigaspora margarita (Becker and Hall). Both aluminumsulfate and mycorrhizal treatments increased shoot dry weight.
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  • 78
    ISSN: 1573-5117
    Keywords: phosphorus ; nutrient ; regeneration ; Daphnia ; herbivores ; phytoplankton ; P-demand ; primary production ; Lake Vechten
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Data on phosphate excretion rates of zooplankton are based on measurements using the pelagic crustacean zooplankton of Lake Vechten and laboratory-cultured Daphnia galeata. In case of Daphnia sp we measured the effects of feeding on P-rich algae and P-poor algae (Scenedesmus) as food on the P-excretion rates at 20°C. The excretion rates of the natural zooplankton community, irrespective of the influence of the factors mentioned, varied by an order of magnitude: 0.025–0.275µg PO4-Pmg−1C in zooplankton (C zp ) h−1. The temperature accounted for about half the observed variation in excretion rates. The mean excretion rates in the lake, computed for 20°C, varied between 0.141 and 0.260 µg Pmg−1C zp h−1. Based on data of zooplankton biomass in the lake the P-regeneration rates by zooplankton covered between 22 and 239% of the P-demand of phytoplankton during the different months of the study period. In D. galeata, whereas the C/P ratios of the Scenedesmus used as food differed by a factor 5 in the experiments, the excretion rates differed by factor 3 only. Despite the higher P-excretion rates (0.258± 0.022 µg PO4-P mg−1 C h−1) of the daphnids fed with P-rich food than those fed with P-poor food (0.105 ± 0.047 µg PO4-P mg−1 C hp−1), both the categories of the animals were apparently conserving P. A survey of the literature on zooplankton excretion shows that in Daphnia the excretion rates vary by a factor 30, irrespective of the species and size of animals and method of estimation and temperature used. About two-thirds of this variation can be explained by size and temperature. A major problem of comparability of studies on P-regeneration by zooplankton relates to the existing techniques of P determination, which necessitates concentrating the animals several times above the in situ concentration (crowding) and prolonged experimental duration (starving), both of which manifest in marked changes that probably lead to underestimation of the ‘real’ rates.
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  • 79
    ISSN: 1573-515X
    Keywords: budget ; carbon ; mass balance ; Narragansett Bay ; nitrogen ; nutrients ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract Narragansett Bay is a relatively well-mixed, high salinity coastal embayment and estuary complex in southern New England (USA). Much of the shoreline is urban and the watershed is densely developed. We have combined our data on C, N, and P inputs to this system, on C, N, and P accumulation in the sediments, and on denitrification with extensive work by others to develop approximate annual mass balances for these elements. The results show that primary production within the bay is the major source of organic carbon (4 times greater than other sources), that land drainage and upstream sewage and fertilizer are the major sources of N, and that landward flowing bottom water from offshore may be a major source of dissolved inorganic phosphorus. Most of the nutrients entering the bay arrive in dissolved inorganic form, though DON is a significant component of the N carried by the rivers. About 40% of the DIN in the rivers is in the form of ammonia. Sedimentation rates are low in most of Narragansett Bay, and it appears that less than 20% of the total annual input of each of these elements is retained within the system. A very small amount of C, N, and P is removed in fisheries landings, denitrification in the sediments removes perhaps 10–25% of the N input, and most of the carbon fixed in the system is respired within it. Stoichiometric calculations suggest that some 10–20% of the organic matter formed in the bay is exported to offshore and that Narragansett Bay is an autotrophic system. Most of the N and P that enters the bay is, however, exported to offshore waters in dissolved inorganic form. This assessment of the overall biogeochemical behavior of C, N, and P in the bay is consistent with more rigorously constrained mass balances obtained using large living models or mesocosms of the bay at the Marine Ecosystem Research Laboratory (MERL).
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  • 80
    ISSN: 1573-1561
    Keywords: Plant secondary metabolites ; biotransformation ; detoxification ; herbivore ; marsupial ; lagomorph ; acidosis ; ammonium ; phosphorus ; sodium ; organic acids ; kidney
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract Regulation of acid-base homeostasis is essential for mammals and birds. Biotransformation and metabolism of absorbed plant secondary metabolites (PSMs) results in the production of organic acids that threaten acid-base homeostasis. Consequently these acids must be buffered and excreted from the body. The production of an acid load from detoxified PSMs should occur in herbivorous mammals and birds and with most PSMs and so may provide a unifying theme to explain many effects of PSMs on animal metabolism. Since the organic acids will be largely ionized at physiological pH, disposal of the hydrogen ion and the organic anion may proceed independently. Most hydrogen ions (H+) from organic acids are eliminated by one or more of three ways: (1) when they react with bicarbonate in the extracellular fluid to form carbon dioxide and the carbon dioxide is exhaled, (2) when they bind to dibasic phosphate and are excreted by the kidney as monobasic phosphate, and (3) when they are buffered and retained in the skeletal system. The secretion of phosphate ions and ammonium excretion are two ways in which the kidney replaces bicarbonate ions that have been eliminated as carbon dioxide. Secretion in the kidney tubule is an important means of excreting excessive organic anions rapidly. This process is saturable and may be subject to competition from a variety of different metabolites. Lagomorphs have limited capacity to form new bicarbonate from ammonium excretion and may therefore be obliged to excrete other cations such as sodium to balance the excretion of organic anions from PSMs. Acidemia has wide-ranging impacts on animals but browsing mammals and birds may have to break down muscle tissues to provide for urinary ammonium in order to generate bicarbonate for buffering. Acidemia also can affect the extent of urea recycling. Animals consuming browse diets may have to regulate feeding so that the rate of formation of hydrogen ions does not exceed the rate of disposal. The mechanisms by which this could occur are unknown.
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  • 81
    ISSN: 1573-0867
    Keywords: model ; pasture ; phosphorus ; RPR ; reactive phosphate rock ; Sechura phosphate rock ; SPR ; superphosphate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A national series of rates × forms of phosphate fertilizer trials has provided a large amount of data on patterns of response of pasture production and soil P tests to forms, rates and frequencies of P fertilizer application over time. A simple mechanistic model of P in pastoral systems has been developed in an attempt to account for the observed patterns. The model considers active P in the soil to be in one of two compartments: undissolved fertilizer P (PF) and a pool of labile, plant-available P (PA). P dissolving from PF enters PA, and P is lost from PA by immobilisation in the soil and by net removal above ground through non-recycled uptake by plants. Both these transfers are taken to follow first order kinetics, with rate constants designated K1 and K2 respectively. Pasture dry matter (DM) production in any year is related to the mid-year value of PA by the diminishing-returns Mitscherlich equation, with nil pasture yield being associated with nil PA. Data from different sites with the same design were combined to give generalised response patterns with which to assess the model. Only the control treatment and treatments receiving triple superphosphate (TSP) and Sechura phosphate rock (SPR) were considered. With a value for K1 corresponding to almost immediate dissolution, the model accounted well for the Olsen soil P test patterns from TSP when K2 corresponded to an annual loss of 16.3% of P in PA and a factor of 10 was used to convert Olsen P to kg P/ha in PA. Pasture DM yield response curves to rates of TSP in individual years were well accounted for when the mid-year value of PA required for 90% relative yield was taken as 130 kg P/ha. The model also accounted well for the difference between response patterns to annual and triennial TSP applications for both soil P tests and DM production. The declines in soil P tests and DM production which occurred in nil P controls were less than model predictions: this could be due to unfertilised pasture making more use of P from greater soil depth or less available forms. Olsen P tests with the higher rates of SPR were always lower than model predictions using a value for K1 derived from chemical measurement of SPR dissolution rates in the trials. However, DM yields from SPR were generally close to model predictions. These divergent results support independent data suggesting that available soil P from reactive phosphate rocks (RPRs) is underestimated by the Olsen P test. The relative success of this simple compartmental model in accounting for generalised response patterns in such a large body of data suggests that it could be a useful starting point for a dynamic P fertilizer recommendation model.
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  • 82
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    Nutrient cycling in agroecosystems 41 (1995), S. 49-57 
    ISSN: 1573-0867
    Keywords: Cameroon ; fertility ; phosphorus ; site characterization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Fertility capability of surface (0–20 cm) soils was evaluated at six sites in the North-West Cameroon highlands. Two main soil groups, designated as Classes A and B, were identified based on elevation. The Class A soils from low elevations (600–1178 m) had higher Ca, Mg, K, pH, sorbed less P and were lower in organic carbon and sesquioxides than the highland (〉 1200 m) soils. Soil acidity (Al saturation 〉 30%) and high P sorption appeared to be the most limiting factors to crop production especially on the Class B soils where the Standard P Requirement exceeded 500 mg kg−1. Phosphorus sorption data were best described by the Freundlich equation. Amorphous aluminium was the most important determinant of solution P concentration (r = 0.85,p 〈 0.001) followed by soil organic carbon, (r = 0.80,p 〈 0.001) at high P rates. Nitrogen deficiency symptoms of maize were pronounced on the Class B soils. Consequently, crop growth and yield were lower on Class B than on Class A soils despite the high organic carbon in B. We hypothesize that the supply of high quality organic material (high in N and low in lignin and polyphenols) at site B through agroforestry and related cropping systems, would improve the fertility of the soil and crop yield.
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  • 83
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    Nutrient cycling in agroecosystems 42 (1995), S. 117-121 
    ISSN: 1573-0867
    Keywords: Cochliobolus miyabeanus ; rice brown leaf spot ; phosphorus ; disease-fertilizer interaction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Studies have been undertaken in a 1000 ha area of irrigated rice (Oryzica sativa) at Caroni (1975) Limited to determine the effect of the fertilizer programme on the incidence of important diseases. Over a period of three years higher levels of brown leaf spot (Cochliobolus miyabeanus) on rice varieties Oryzica 1 and Oryzica 5 on three different soil types were associated with increasing levels of leaf P, from a low of 0.149% of dry matter (DM) to a high of 0.396% DM. On the Washington silty clay loam series (Inceptisol) brown leaf spot incidence was lowest when leaf P was between 0.135% and 0.149% of DM. However, disease incidence was higher when leaf P levels fell to 0.133% of DM or rose above 0.149%, under conditions where N was more than adequate. The moderate levels of the disease experienced over the period had no effect on yield, as grain infection was minimal. The results support the conclusion that the incidence of brown leaf spot on irrigated rice at Caroni is influenced by sub-optimal levels paticularly of P. Careful monitoring and managememt of P nutrition is seen as an important part in the overall strategy for controlling the disease.
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  • 84
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    Irrigation and drainage systems 9 (1995), S. 259-277 
    ISSN: 1573-0654
    Keywords: drainage ; controlled drainage ; DRAINMOD ; water table management ; model ; nitrogen ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The design and management of drainage systems should consider impacts on drainage water quality and receiving streams, as well as on agricultural productivity. Two simulation models that are being developed to predict these impacts are briefly described. DRAINMOD-N uses hydrologic predictions by DRAINMOD, including daily soil water fluxes, in numerical solutions to the advective-dispersive-reactive (ADR) equation to describe movement and fate of NO3-N in shallow water table soils. DRAINMOD- CREAMS links DRAINMOD hydrology with submodels in CREAMS to predict effects of drainage treatment and controlled drainage losses of sediment and agricultural chemicals via surface runoff. The models were applied to analyze effects of drainage intensity on a Portsmouth sandy loam in eastern North Carolina. Depending on surface depressional storage, agricultural production objectives could be satisfied with drain spacings of 40 m or less. Predicted effects of drainage design and management on NO3-N losses were substantial. Increasing drain spacing from 20 m to 40 m reduced predicted NO3-N losses by over 45% for both good and poor surface drainage. Controlled drainage further decreases NO3-N losses. For example, predicted average annual NO3-N losses for a 30 m spacing were reduced 50% by controlled drainage. Splitting the application of nitrogen fertilizer, so that 100 kg/ha is applied at planting and 50 kg/ha is applied 37 days later, reduced average predicted NO3-N losses but by only 5 to 6%. This practice was more effective in years when heavy rainfall occurred directly after planting. In contrast to effects on NO3-N losses, reducing drainage intensity by increasing drain spacing or use of controlled drainage increased predicted losses of sediment and phosphorus (P). These losses were small for relatively flat conditions (0.2% slope), but may be large for even moderate slopes. For example, predicted sediment losses for a 2% slope exceeded 8000 kg/ha for a poorly drained condition (drain spacing of 100 m), but were reduced to 2100 kg/ha for a 20 m spacing. Agricultural production and water quality goals are sometimes in conflict. Our results indicate that simulation modeling can be used to examine the benefits of alternative designs and management strategies, from both production and environmental points-of-view. The utility of this methodology places additional emphasis on the need for field experiments to test the validity of the models over a range of soil, site and climatological conditions.
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  • 85
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    Antonie van Leeuwenhoek 67 (1995), S. 363-370 
    ISSN: 1572-9699
    Keywords: riboprinting ; ribotyping ; RFLP ; 18SrDNA ; 25SrDNA ; ITS1 ; ITS2 ; Saccharomyces ; yeast phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Type strains of 10 genotypically distinctSaccharomyces species are differentiated by ribosomal DNA restriction fragment analysis (ribotyping). The full length of the chromosomal ribosomal repeat was amplified in two parts, the 18SrDNA including both ITS regions (2600 bp) and the 25SrDNA (3300 bp). Restriction fragments generated by 9 enzymes from these two products yield characteristic patterns, by which unknownSaccharomyces isolates are assigned to the type strains. For convenient separation and detection only fragments longer than 200 bp were monitored. In contrast to molecular differentiation methods of highest resolution as RAPD-PCR or fingerprinting, the results from ribotyping are absolutely reproducible and thereby suitable for databases. The phylogeny computed from the discrete character matrix for presence/absence of fragments by the PHYLIP program package is in complete accordance to the phylogeny derived from ribosomal RNA sequence analysis. By this the field of application of the long range ribotyping can be regarded basically as equal to DNA sequence analysis of the same locus. Because distant relationships are recognized, missidentified genera were detected upon the species assignment. This cannot be done by methods of higher resolution like RAPD-PCR or fingerprinting.
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    Antonie van Leeuwenhoek 68 (1995), S. 35-42 
    ISSN: 1572-9699
    Keywords: black yeasts ; Exophiala ; Wangiella ; Phaeococcomyces ; PCR-ribotyping ; RFLP ; PCR ; ribosomal repeat ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Portion of the ribosomal repeat of the type strains of the generaExphiala andPhaeococcomyces were subjected to RFLP analysis. The amplicon length of the small subunit rRNA, the fragment NS1-NS24, was found to vary between 1800 to 3200 nucleotides. In contrast, the length of the fragment ITS1-ITS4 comprising the internal transcribed spacers (ITS1 and ITS2) was found to be constant at 600 nucleotides. Analysis of restriction profiles confirmed the synonymy ofExophiala dermatitidis andMycotorula schawii. Torula bergeri andSporotrichum gougerotii were found to be identical toPhaeoannellomyces elegans, but different from their alleged synomymE. castellanii. A phenogram is presented.
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  • 87
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    New forests 10 (1995), S. 207-223 
    ISSN: 1573-5095
    Keywords: Fertilization ; foliar analysis ; nitrogen ; phosphorus
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The effects of thinning and refertilization on growth of Pinus radiata in three experiments planted at 11 960 stems ha−1 were examined. Responses to thinning and refertilization were obtained at 3 or 5 years after planting despite heavy applications of fertilizer at establishment. During the 3 years following retreatment, trees which had been thinned to 2990 stems ha−1 had twice the sectional area increments of unthinned trees, while up to a 3-fold increase in increment was obtained on trees which had been thinned and refertilized. Responses to nitrogen were obtained in all experiments. Response to phosphate was dependent upon soil type and prior treatment. Foliar analyses do not appear to be reliable for predicting responses to fertilization applied in combination with thinning.
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  • 88
    ISSN: 1573-5060
    Keywords: bread-wheat ; chromosome deletion ; restriction fragment length polymorphism ; RFLP ; Triticum aestivum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary A study was undertaken to evaluate the breeding behaviour and to identify a spontaneously produced putative chromosomal deletion in the winter wheat (Triticum aestivum L. em. Thell.) cv Norstar. Male and female transmission studies of plants heterozygous for the deletion chromosome indicated 9.5% and 48.8% transmission through the pollen and the egg, respectively. Meiotic analyses of progeny from deletion heterozygotes indicated that the deletion chromosome was eliminated from half of the plants, which agreed with the male and female transmission frequencies. Testcrosses of the deletion chromosome with telocentrics and nullisomic-tetrasomic combinations suggested that the deletion involved the long arm of chromosome 5D. This was confirmed by restriction fragment length polymorphism (RFLP) analysis. Also, monosomic plants obtained in progeny of deletion heterozygotes were shown to be monosomic for 5D. Studies of plants homozygous for the deletion showed relatively normal pairing between the deletion chromosomes, and with the short arm (5DS), but not the long arm (5DL). Deletion homozygotes were self-sterile, and morphologically similar to plants nullisomic for 5D, but plants that also contained 5DL, or a homoeologous chromosome were self-fertile and had normal morphology. Studies of chromosome morphology indicated that the deletion chromosome was metacentric, and the length of the long arm was reduced by approximately 60%. RFLP studies showed that, in terms of genetic distance, 90% of the arm was missing.
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  • 89
    ISSN: 1573-5060
    Keywords: mitochondrial genome diversity ; perennial ryegrass ; Lolium perenne ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The extent of mitochondrial DNA restriction fragment length polymorphisms among individual plant samples of perennial ryegrass was determined. A total of 72 plants from three cultivars Yorktown II, S23 and Riikka were surveyed using three restriction enzymes (BamHI,EcoRI andHindIII) and three mitochondrial gene probes (coxI, coxIII andnad9). Polymorphisms were noted within each of the two cultivars Yorktown II and S23, whereas in ‘Riikka’ no variation was detected. It seems most likely that the mitochondrial genome diversity within the same cultivar has resulted from non-homogeneous ancestor cytoplasms. The hybridization-based assay employed is simple to perform, gives unambiguous results, and may thus be used in mass screening of perennial ryegrass populations for breeding purpose.
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    Journal of aquatic ecosystem stress and recovery 4 (1995), S. 25-58 
    ISSN: 1573-5141
    Keywords: lakes ; phosphorus ; eutrophication ; models ; management ; predictive accuracy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A lake is a product of processes in its watershed, and these relationships should be empirically quantifiable. Yet few studies have made that attempt. This study quantifies and ranks variables of significance to predict annual mean values of total phosphorus (TP) in small glacial lakes. Several new empirical models based on water chemistry variables, on ‘map parameters’ of the lake and its catchment, and combinations of such variables are presented. Each variable provides only a limited (statistical) explanation of the variation in annual mean values of TP among lakes. The models are markedly improved by accounting for the distribution of the characteristics (e.g., the mires) in the watershed. The most important map parameters were the proportion of the watershed lying close to the lake covered by rocks and open land (as determined with the drainage area zonation method), relief of the drainage area, lake area and mean depth. These empirical models can be used to predict annual mean TP but only for lakes of the same type. The model based on ‘map parameters’ (r 2=0.56) appears stable. The effects of other factors/variables not accounted for in the model (like redox-induced internal loading and anthropogenic sources) on the variation in annual mean TP may then be estimated quantitatively by residual analysis. A new mixed model (which combines a dynamic mass-balance approach with empirical knowledge) was also developed. The basic objective was to put the empirical results into a dynamic framework, thereby increasing predictive accuracy. Sensitivity tests of the mixed model indicate that it works as intended. However, comparisons against independent data for annual mean TP show that the predictive power of the mixed model is low, likely because crucial model variables, like sedimentation rate, runoff rate, diffusion rate and precipitation factor, cannot be accurately predicted. These model variables vary among lakes, but this mixed model, like most dynamic models, assumed that they are constants.
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    Biogeochemistry 29 (1995), S. 223-235 
    ISSN: 1573-515X
    Keywords: chronosequence ; montane tropical forest ; nitrogen ; nutrient limitation ; phosphorus ; productivity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract We tested the hypothesis that P was the nutrient limiting net primary production of a nativeMetrosideros polymorpha forest on a highly weathered montane tropical soil in Hawaii. A factorial experiment used all combinations of three fertilizer treatments: nitrogen (N), phosphorus (P) and a mix of other essential nutrients (OE), consisting primarily of mineral derived cations and excluding N and P. P addition, but not N or OE, increased leaf area index within 12 months, foliar P concentration measured at 18 months, and stem diameter increment within 18 months. Stem growth at 18 months was even greater when trees fertilized with P also received the OE treatment. N and P additions increased leaf litterfall and N and P in combination further increased litterfall. The sequence of responses suggests that increased available P promoted an increase in photosynthetic area which led to increased wood production. P was the essential element most limiting to primary production on old volcanic soil in contrast to the N limitation found on young volcanic soils.
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  • 92
    ISSN: 1572-9788
    Keywords: marker-based selection ; nematode resistance ; potato ; PCR ; RFLP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The use of RFLPs for marker-assisted selection schemes in potato breeding is hampered by the fact that RFLP technology requires good laboratory facilities, technical skills and high financial input. Marker technology based on the polymerase chain reaction (PCR) would facilitate the application of marker-assisted selection. PCR assays have been developed that are diagnostic for RFLP alleles at two marker loci,CP56 andCP113, which are closely linked in coupling to the nematode resistance allelesGro1 on chromosome VII andH1 on chromosome V of potato. By comparing DNA sequences among different marker alleles, point mutations were identified based on which allele-specific oligonucleotides were designed. Using allele-specific oligonucleotides as primers in PCR reactions, single-marker alleles were amplified by which the inheritance ofGro1 andH1 could be followed in crosses of diploid potato genotypes containing the genetically characterizedGro1 orH1 resistance allele. When tested in 136 unrelated tetraploid potato varieties, the marker allele indicative ofGro1 was not correlated with the presence of nematode resistance. The marker allele indicative for theH1 resistance allele was correlated with nematode resistance. It was, however, found in four varieties only of the 136 tested.
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  • 93
    ISSN: 1572-9788
    Keywords: disease resistance ; gene combination ; Oryza sativa L. ; RAPD ; RFLP ; Xanthomonas oryzae pv.oryzae
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Four genes of rice,Oryza sativa L., conditioning resistance to the bacterial blight pathogenXanthomonas oryzae pv.oryzae (X. o. pv.oryzae), were tagged by restriction fragment length polymorphism (RFLP) and random amplified polymorphic DNA (RAPD) markers. No recombinants were observed betweenxa-5 and RFLP marker lociRZ390, RG556 orRG207 on chromosome 5.Xa-3 andXa-4 were linked to RFLP locusXNpb181 at the top of chromosome 11, at distances of 2.3 cM and 1.7 cM, respectively. The nearest marker toXa-10, also located on chromosome 11, was the RAPD locusO07 2000 at a distance of 5.3 cM. From this study, the conventional map [19, 28] and two RFLP linkage maps of chromosome 11 [14, 26] were partially integrated. Using the RFLP and RAPD markers linked to the resistance genes, we selected rice lines homozygous for pairs of resistance genes,Xa-4 +xa-5 andXa-4 +Xa-10. Lines carryingXa-4 +xa-5 andXa-4 +Xa-10 were evaluated for reaction to eight strains of the bacterial blight pathogen, representing eight pathotypes and three genetic lineages. As expected, the lines carrying pairs of genes were resistant to more of the isolates than their single-gene parental lines. Lines carryingXa-4 +xa-5 were more resistant to isolates of race 4 than were either of the parental lines (‘quantitative complementation’). No such effects were seen forXa-4 +Xa-10. Thus, combinations of resistance genes provide broader spectra of resistance through both ordinary gene action expected and quantitative complementation.
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    Molecular breeding 1 (1995), S. 389-395 
    ISSN: 1572-9788
    Keywords: barley ; Hordeum vulgare ; RFLP ; consensus map
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A consensus linkage map of the barley genome was constructed. The map is based on six doubled haploid and one F2 population. The mapping data for three of the doubled haploid populations was obtained via the GrainGenes database. To allow merger of the maps, only RFLP markers that produce a single scorable band were included. Although this reduced the available markers by about half, the resultant map contains a total of 587 markers including 87 of known function. As expected, gene order was highly conserved between maps and all but two discrepancies were found in closely linked markers and are likely to result from the small population sizes used for some maps. The consensus map allows the rapid localisation of markers between published maps and should facilitate the selection of markers for high-density mapping in defined regions.
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