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  • Springer  (230,772)
  • Cell Press  (23,203)
  • Frontiers Media
  • 2015-2019  (226,314)
  • 1975-1979  (44,617)
  • 1940-1944
  • 2018  (104,962)
  • 2015  (121,352)
  • 1977  (44,617)
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  • 2015-2019  (226,314)
  • 1975-1979  (44,617)
  • 1940-1944
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  • 1
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    Landforms and landscapes of Mount Etna (Sicily): relationships between a volcano, its environment and human activity (2018)
    Springer | Springer
    Details
    Publication Date: 2020-10-13
    Description: Mount Etna is the highest relief in Sicily and represents a unique environment because of its long established and almost continuous eruptive activity, that has moulded its landforms and which has produced distinctive landscapes. Over the past 60 ka both destructive and constructive geological processes have produced the principal morphological features of the volcano such as the wide Valle del Bove depression, monogenic scoria cones and extensive lava flow fields. Relationships between Etna, its environment and human activity began in the Neolithic Period within the mountain foot region and have developed over millennia. Even though there has been a rapid rate of resurfacing by lava during historic times, the impact on human activity has been short-lived, recovery has been rapid and society has adjusted to the ever present hazard in distinctive ways.
    Description: Published
    Description: 467-478
    Description: 1V. Storia eruttiva
    Description: N/A or not JCR
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 2
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    Long-Term Disaster-Prevention Strategies Based on Education (2015)
    Springer
    Details
    Publication Date: 2020-12-23
    Description: Although human behavior is the crucial factor in the degree of vulnerability and the likelihood of disasters taking place, preparedness and prevention programs are not mandatory in all countries around the world. Within the framework of UPStrat-MAFA (Urban disaster Prevention Strategies using MAcroseismic FAults), we have defined the disaster prevention strategies based on education management information and actions taken in Iceland, Portugal, Spain, and Italy. A detailed comparative study shows that compulsory school in these four participating countries is greatly unprepared with regard to hazard education, and these results are in line with worldwide studies. Moreover, when hazards are addressed, this is not done at an early age, which results in a missed chance to intervene in the noncognitive side of awareness, which decreases at later ages. To comply with the urge to take actions towards training and education at an early age, we used hands-on tools and learn-by-playing approaches in an informal learning environment. To reach the older population, the audio- visual media appears to be the best and lowest cost alternative to promote risk perception, awareness and education.
    Description: Published
    Description: 77-80
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: Disaster prevention ; Education ; Seismic hazard ; Information strategies ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 3
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    Communicating Information on Eruptions and Their Impacts from the Earliest Times Until the Late Twentieth Century (2018)
    Springer
    Details
    Publication Date: 2020-10-13
    Description: Volcanoes hold a fascination for human beings and, before they were recorded by literate observers, eruptions were portrayed in art, were recalled in legend and became incorporated into religious practices: being viewed as agents of punishment, bounty or intimidation depending upon their state of activity and the culture involved. In the Middle East the earliest record dates from the third millennium BCE and knowledge of volcanoes increased progressively over time. In the first century CE written records noted nine volcanoes in the Mediterranean region plus Mount Cameroon in West Africa, yet by 1380 AD the record only totalled 48, with volcanoes in Japan, Indonesia and Iceland being added. After this the list of continued to increase, but important regions such as New Zealand and Hawaii were only added during the last 200 years. Only from 1900 did the rate of growth decline significantly, but it is sobering to recall that in the twentieth century major eruptions have occurred from volcanoes that were considered inactive or extinct, examples including: Mount Lamington—Papua New Guinea, 1951; Mount Arenal—Costa Rica, 1968 and Nyos—Cameroon, 1986. Although there were instances where the human impact of historical eruptions were studied in detail, with examples including the 1883 eruption of Krakatau and 1943–1952 eruption of Parícutin, these were exceptions and before 1980 there was a significant knowledge gap about both the short and long-term effects of major eruptions on societies. Following a global review, this chapter provides a discussion of the ways in which information has been collected, compiled and disseminated from the earliest times until the 1980s in two case study areas: the Azores Islands (Portugal) and southern Italy. In Italy information on eruptions stretches back to prehistoric times and has become progressively better known over more than 2,000 years, yet even here there remain significant gaps in the record even for events that took place between 1900 and 1990. In contrast, located in the middle of the Atlantic, the Azores have been isolated for much of their history and illustrate the difficulties involved in using indigenous sources to compile, not only assessments of impact, but also at a more basic level a complete list of historical events with accurate dates.
    Description: Published
    Description: 1-25
    Description: 1V. Storia eruttiva
    Description: N/A or not JCR
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 4
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    The European experience of educational seismology (2015)
    Springer
    Details
    Publication Date: 2020-11-25
    Description: This chapter provides an overview of last two decades, European experiences in educational seismology and describes the different contexts in which they have been developed. The basic idea of these educational projects is that Seismology may represent an efficient communication vehicle for teaching a wide range of basic Earth sci-ence topics through laboratory practices and educational activities. Moreover it is also an effective tool to raise in the young citizens the awareness on the earthquake risk and possible mitigation actions. In this frame several seismic stations with different technologies were installed in schools across Europe. The scientific support of re-searchers and the need to establish strong links between teachers and researchers attribute to the school an active role in the knowledge process using the scientific laboratory practice by adopting the “learning by doing” modern approach of science communication (R. Schank and C. Cleary, 1995, Engines for Education, Ed. Routledge, 248 pp). Some educational activities correlated with seismological projects are presented, following different strategies depending on the country, but all aimed at building a new way to communicate science in the schools. The new vogue is the opening toward social networks and blogs. This generalizes the concept of an educational Geoscience website making it an e-platform for science communication and multimedia data sharing, where researchers, teachers, students and education op-erators can interact and constantly be kept informed of ongoing activities and relevant events. All of these 'seismology at school' initiatives rely on the concept of school networking and will merge in the European project NERA (Network of European Research Infrastructures for Earthquake Risk Assessment and Mitigation, http://www.nera-eu.org/) where a spe-cific workpackage is dedicated to networking school seismology programs.
    Description: Published
    Description: 145-170
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: educational seismology ; educational projects ; learning by doing ; science communication ; school seismology ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 5
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    Applying the Disruption Index Procedure to Evaluate the Urban Seismic Risk in the Mt. Etna Area (Italy) (2015)
    Springer
    Details
    Publication Date: 2020-12-23
    Description: The Disruption Index is used here for the assessment of urban disruption in the Mt. Etna area after a natural disaster. The first element of the procedure is the definition of the seismic input, which is based on information about the historical seismicity and seismogenic faults. The second element is the computation of the seismic impact on the building stock and infrastructure in the region considered. Information on urban-scale vulnerability was collected and a geographic information system was used to organize the data relating to buildings and network systems (e.g., typologies, schools, strategic structures, lifelines). The central idea underlying the definition of the Disruption Index is the identification and evaluation of the impacts on a target community, considering the physical elements that contribute most to the severe disruption. The results of this study are therefore very useful for earthquake preparedness planning and for the development of strategies to minimize the risks from earthquakes. This study is a product of the European “Urban Disaster Prevention Strategies using Macroseismic Fields and Fault Sources” project (UPStrat-MAFA European project 2013).
    Description: Published
    Description: Torino
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: open
    Keywords: Seismic impact ; Disruption index ; Urban system ; Risk measures ; Mt. Etna area (Italy) ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 6
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    Towards multi-resolution global climate modeling with ECHAM6–FESOM. Part I: model formulation and mean climate (2015)
    Springer
    In:  EPIC3Climate Dynamics, Springer, 44(3), pp. 757-780, ISSN: 0930-7575
    Details
    Publication Date: 2017-01-27
    Description: A new climate model has been developed that employs a multi-resolution dynamical core for the sea ice-ocean component. In principle, the multi-resolution approach allows one to use enhanced horizontal resolution in dynamically active regions while keeping a coarse-resolution setup otherwise. The coupled model consists of the atmospheric model ECHAM6 and the finite element sea ice-ocean model (FESOM). In this study only moderate refinement of the unstructured ocean grid is applied and the resolution varies from about 25 km in the northern North Atlantic and in the tropics to about 150 km in parts of the open ocean; the results serve as a benchmark upon which future versions that exploit the potential of variable resolution can be built. Details of the formulation of the model are given and its performance in simulating observed aspects of the mean climate is described. Overall, it is found that ECHAM6–FESOM realistically simulates many aspects of the observed climate. More specifically it is found that ECHAM6–FESOM performs at least as well as some of the most sophisticated climate models participating in the fifth phase of the Coupled Model Intercomparison Project. ECHAM6–FESOM shares substantial shortcomings with other climate models when it comes to simulating the North Atlantic circulation.
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
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    Ballasting by cryogenic gypsum enhances carbon export in a Phaeocystis under-ice bloom (2018)
    Springer
    In:  EPIC3Scientific Reports, Springer, 8(7703)
    Details
    Publication Date: 2019-02-14
    Description: Mineral ballasting enhances carbon export from the surface to the deep ocean; however, little is known about the role of this process in the ice-covered Arctic Ocean. Here, we propose gypsum ballasting as a new mechanism that likely facilitated enhanced vertical carbon export from an under-ice phytoplankton bloom dominated by the haptophyte Phaeocystis. In the spring 2015 abundant gypsum crystals embedded in Phaeocystis aggregates were collected throughout the water column and on the sea floor at a depth below 2 km. Model predictions supported by isotopic signatures indicate that 2.7 g m−2 gypsum crystals were formed in sea ice at temperatures below −6.5°C and released into the water column during sea ice melting. Our finding indicates that sea ice derived (cryogenic) gypsum is stable enough to survive export to the deep ocean and serves as an effective ballast mineral. Our findings also suggest a potentially important and previously unknown role of Phaeocystis in deep carbon export due to cryogenic gypsum ballasting. The rapidly changing Arctic sea ice regime might favour this gypsum gravity chute with potential consequences for carbon export and food partitioning between pelagic and benthic ecosystems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    Oxygen fluxes beneath Arctic land-fast ice and pack ice: towards estimates of ice productivity (2018)
    Springer
    In:  EPIC3Polar Biology, Springer, ISSN: 0722-4060
    Details
    Publication Date: 2018-06-14
    Description: Sea-ice ecosystems are among the most extensive of Earth’s habitats; yet its autotrophic and heterotrophic activities remain poorly constrained. We employed the in situ aquatic eddy-covariance (AEC) O2 flux method and laboratory incubation techniques (H14CO3−, [3H] thymidine and [3H] leucine) to assess productivity in Arctic sea-ice using different methods, in conditions ranging from land-fast ice during winter, to pack ice within the central Arctic Ocean during summer. Laboratory tracer measurements resolved rates of bacterial C demand of 0.003–0.166 mmol C m−2 day−1 and primary productivity rates of 0.008–0.125 mmol C m−2 day−1 for the different ice floes. Pack ice in the central Arctic Ocean was overall net autotrophic (0.002–0.063 mmol C m−2 day−1), whereas winter land-fast ice was net heterotrophic (− 0.155 mmol C m−2 day−1). AEC measurements resolved an uptake of O2 by the bottom-ice environment, from ~ − 2 mmol O2 m−2 day−1 under winter land-fast ice to~ − 6 mmol O2 m−2 day−1 under summer pack ice. Flux of O2-deplete meltwater and changes in water flow velocity masked potential biological-mediated activity. AEC estimates of primary productivity were only possible at one study location. Here, productivity rates of 1.3 ± 0.9 mmol O2 m−2 day−1, much larger than concurrent laboratory tracer estimates (0.03 mmol C m−2 day−1), indicate that ice algal production and its importance within the marine Arctic could be underestimated using traditional approaches. Given careful flux interpretation and with further development, the AEC technique represents a promising new tool for assessing oxygen dynamics and sea-ice productivity in ice-covered regions.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    In-situ mechanical weakness of subducting sediments beneath a plate boundary décollement in the Nankai Trough (2018)
    Springer
    In:  EPIC3Progress in Earth and Planetary Science, Springer
    Details
    Publication Date: 2018-11-12
    Description: The study investigates the in-situ strength of sediments across a plate boundary décollement using drilling parameters recorded when a 1180-m-deep borehole was established during International Ocean Discovery Program (IODP)Expedition 370, Temperature-Limit of the Deep Biosphere off Muroto (T-Limit). Information of the in-situ strength of the shallow portion in/around a plate boundary fault zone is critical for understanding the development of accretionary prisms and of the décollement itself. Studies using seismic reflection surveys and scientific ocean drillings have recently revealed the existence of high pore pressure zones around frontal accretionary prisms, which may reduce the effective strength of the sediments. A direct measurement of in-situ strength by experiments, however, has not been executed due to the difficulty in estimating in-situ stress conditions. In this study, we derived a depth profile for the in-situ strength of a frontal accretionary prism across a décollement from drilling parameters using the recently established equivalent strength (EST) method. At site C0023, the toe of the accretionary prism area off Cape Muroto, Japan, the EST gradually increases with depth but undergoes a sudden change at ~ 800 mbsf, corresponding to the top of the subducting sediment. At this depth, directly below the décollement zone, the EST decreases from ~ 10 to 2 MPa, with a change in the baseline. This mechanically weak zone in the subducting sediments extends over 250 m (~ 800–1050 mbsf), corresponding to the zone where the fluid influx was discovered, and high-fluid pressure was suggested by previous seismic imaging observations. Although the origin of the fluids or absolute values of the strength remain unclear, our investigations support previous studies suggesting that elevated pore pressure beneath the décollement weakens the subducting sediments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    YOUMARES 8 – Oceans Across Boundaries: Learning from each other (2018)
    Springer
    In:  EPIC3Cham, Springer, 259 p., ISBN: 978-3-319-93284-2
    Details
    Publication Date: 2020-06-12
    Description: This open access book presents the proceedings volume of the YOUMARES 8 conference, which took place in Kiel, Germany, in September 2017, supported by the German Association for Marine Sciences (DGM). The YOUMARES conference series is entirely bottom-up organized by and for YOUng MARine RESearchers. Qualified early career scientists moderated the scientific sessions during the conference and provided literature reviews on aspects of their research field. These reviews and the presenters’ conference abstracts are compiled here. Thus, this book discusses highly topical fields of marine research and aims to act as a source of knowledge and inspiration for further reading and research.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Book , peerRev
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  • 11
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    Input of energy/underwater noise (2018)
    Springer
    In:  EPIC3Handbook on Marine Environment Protection, Handbook on Marine Environment Protection, Berlin, Springer, 1024 p., pp. 463-485, ISBN: 978-3-319-60154-0
    Details
    Publication Date: 2018-07-23
    Description: Underwater sound is ubiquitous throughout the world’s oceans. Evaluating its impact and relevance for the marine fauna is highly complex and hampered by a paucity of data, lack of understanding and ambiguity of terms. When comparing sound (an energetic pollutant) with substantial pollutants (chemical, biological or marine litter) two notable differences emerge: Firstly, while sound propagates instantaneously away from the source, it also ceases immediately within minutes of shutting off the source. Anthropogenic noise is hence per-se ephemeral, lending itself to a set of in-situ mitigation strategies unsuitable for mitigation of persistent pollutants. Secondly, while pollution with hazardous substances can readily be described quantitatively with few parameters (environmental concentration as the most important one), the description of sound and its impact on aquatic life is of much higher complexity, as to be evidenced by the issues multifaceted description following hereinafter.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 12
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    Towards multi-resolution global climate modeling with ECHAM6-FESOM. Part II: climate variability (2018)
    Springer
    In:  EPIC3Climate Dynamics, Springer, 50, ISSN: 0930-7575
    Details
    Publication Date: 2019-04-11
    Description: This study forms part II of two papers describing ECHAM6-FESOM, a newly established global climate model with a unique multi-resolution sea ice-ocean component. While part I deals with the model description and the mean climate state, here we examine the internal climate variability of the model under constant present-day (1990) conditions. We (1) assess the internal variations in the model in terms of objective variability performance indices, (2) analyze variations in global mean surface temperature and put them in context to variations in the observed record, with particular emphasis on the recent warming slowdown, (3) analyze and validate the most common atmospheric and oceanic variability patterns, (4) diagnose the potential predictability of various climate indices, and (5) put the multi-resolution approach to the test by comparing two setups that differ only in oceanic resolution in the equatorial belt, where one ocean mesh keeps the coarse ~1° resolution applied in the adjacent open-ocean regions and the other mesh is gradually refined to ~0.25°. Objective variability performance indices show that, in the considered setups, ECHAM6-FESOM performs overall favourably compared to five well-established climate models. Internal variations of the global mean surface temperature in the model are consistent with observed fluctuations and suggest that the recent warming slowdown can be explained as a once-in-one-hundred-years event caused by internal climate variability; periods of strong cooling in the model (‘hiatus’ analogs) are mainly associated with ENSO-related variability and to a lesser degree also to PDO shifts, with the AMO playing a minor role. Common atmospheric and oceanic variability patterns are simulated largely consistent with their real counterparts. Typical deficits also found in other models at similar resolutions remain, in particular too weak non-seasonal variability of SSTs over large parts of the ocean and episodic periods of almost absent deep-water formation in the Labrador Sea, resulting in overestimated North Atlantic SST variability. Concerning the influence of locally (isotropically) increased resolution, the ENSO pattern and index statistics improve significantly with higher resolution around the equator, illustrating the potential of the novel unstructured-mesh method for global climate modeling.
    Repository Name: EPIC Alfred Wegener Institut
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  • 13
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    An Efficient Non-iterative Bulk Parametrization of Surface Fluxes for Stable Atmospheric Conditions Over Polar Sea-Ice (2018)
    Springer
    In:  EPIC3Boundary Layer Meteorol., Springer, 166, pp. 301-325
    Details
    Publication Date: 2019-02-15
    Description: In climate and weather prediction models the near-surface turbulent fluxes of heat and momentum and related transfer coefficients are usually parametrized on the basis of Monin–Obukhov similarity theory (MOST). To avoid iteration, required for the numerical solution of the MOST equations, many models apply parametrizations of the transfer coefficients based on an approach relating these coefficients to the bulk Richardson number Rib.However, the parametrizations that are presently used in most climate models are valid only for weaker stability and larger surface roughnesses than those documented during the Surface Heat Budget of the Arctic Ocean campaign (SHEBA). The latter delivered a well-accepted set of turbulence data in the stable surface layer over polar sea-ice. Using stability functions based on the SHEBA data, we solve the MOST equations applying a new semi-analytic approach that results in transfer coefficients as a function of Rib and roughness lengths for momentum and heat. It is shown that the new coefficients reproduce the coefficients obtained by the numerical iterative method with a good accuracy in the most relevant range of stability and roughness lengths. For small Rib , the new bulk transfer coefficients are similar to the traditional coefficients, but for large Ri b they are much smaller than currently used coefficients. Finally, a possible adjustment of the latter and the implementation of the new proposed parametrizations in models are discussed.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    Key Questions and Recent Research Advances on Harmful Algal Blooms in Fjords and Coastal Embayments (2018)
    Springer
    In:  EPIC3Global Ecology and Oceanography of Harmful Algal Blooms, Global Ecology and Oceanography of Harmful Algal Blooms, Springer, 16 p., pp. 187-203, ISBN: 978-3-319-7006
    Details
    Publication Date: 2018-06-23
    Description: Coastal systems partially surrounded by land such as coastal embayments, estuaries and fjords have characteristics that affect the development of harmful algal blooms. Among these, shallow water depths and geophysical constraints from surrounding land masses favour stronger links between the water column and bottom sediments. Typical circulation patterns (e.g., in estuaries) can limit the exchange with offshore waters and favour cell retention. Sub-mesoscale and high-frequency processes are particularly important physical factors that influence pattern and persistence of HABs in coastal systems. Coupling with benthic nutrient fluxes or seed banks from the bottom is enhanced as the degree of physical robustness of coastal systems decreases. The links between bottom cyst distribution patterns and intensity or extension of HABs are still not fully understood. The importance of intra-specific diversity has been highlighted for many HAB species but tools are needed to assist in situ identification of these various life cycle stages. Alternative metabolic strategies, such as mixotrophy or reliance on organic nutrients and allelochemically mediated species interactions, can play a critical role in the development of HA blooms particularly in semi-confined coastal environments. Future work should address the influence of climate change and of coastal aquaculture on blooms of these harmful species in coastal environments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
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    A biodiversity survey of scavenging amphipods in a proposed marine protected area: the Filchner area in the Weddell Sea, Antarctica (2018)
    Springer
    In:  EPIC3Polar Biology, Springer, ISSN: 0722-4060
    Details
    Publication Date: 2019-10-04
    Description: An integrative inventory of the amphipod scavenging fauna (Lysianassoidea), combining morphological identifications with DNA barcoding, is provided here for the Filchner area situated in the south-eastern Weddell Sea. Over 4400 lysianassoids were investigated for species richness and relative abundances, covering 20 different stations and using different sampling devices, including the southernmost baited traps deployed so far (76°S). High species richness was observed: 29 morphospecies of which 5 were new to science. Molecular species delimitation methods were carried out with 109 cytochrome c oxidase I gene (COI) sequences obtained during this study as well as sequences from specimens sampled in other Antarctic regions. These distance-based analyses (trees and the Automatic Barcode Gap Discovery method) indicated the presence of 42 lineages; for 4 species, several (cryptic) lineages were found. More than 96% of the lysianassoids collected with baited traps belonged to the species Orchomenella pinguides s. l. The diversity of the amphipod scavenger guild in this ice-bound ecosystem of the Weddell Sea is discussed in the light of bottom–up selective forces. In this southernmost part of the Weddell Sea, harbouring spawning and nursery grounds for silverfish and icefishes, abundant fish and mammalian food falls are likely to represent the major food for scavengers. Finally, the importance of biodiversity surveys in the context of the establishment of a marine protected area in this region (Weddell Sea MPA) is highlighted and how future studies can contribute to a better understanding the ecological role of scavengers in this system is discussed.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Climate Change: Warming Impacts on Marine Biodiversity (2018)
    Springer
    In:  EPIC3Handbook on Marine Environment Protection, Cham, Switzerland, Springer, 21 p., pp. 353-373, ISBN: 978-3-319-60156-4
    Details
    Publication Date: 2018-02-09
    Description: In this chapter, the effects of temperature change—as a main aspect of climate change—on marine biodiversity are assessed. Starting from a general discussion of species responses to temperature, the chapter presents how species respond to warming. These responses comprise adaptation and phenotypic plasticity as well as range shifts. The observed range shifts show more rapid shifts at the poleward range edge than at the equator-near edge, which probably reflects more rapid immigration than extinction in a warming world. A third avenue of changing biodiversity is change in species interactions, which can be altered by temporal and spatial shifts in interacting species. We then compare the potential changes in biodiversity to actual trends recently addressed in empirical synthesis work on local marine biodiversity, which lead to conceptual issues in quantifying the degree of biodiversity change. Finally we assess how climate change impacts the protection of marine environments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
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    Knowledge Transfer by the Global Terrestrial Network for Permafrost (GTN-P) (2018)
    Springer
    In:  EPIC3Building Bridges at the Science-Stakeholder Interface, Building Bridges at the Science-Stakeholder Interface, Springer, 133 p., pp. 73-78, ISBN: 978-3-319-75919-7
    Details
    Publication Date: 2019-08-15
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev , info:eu-repo/semantics/other
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  • 18
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    First detection of species of the potentially toxic genus Azadinium (Amphidomataceae, Dinophyceae) in tropical coastal waters of Brazil (2018)
    Springer
    In:  EPIC3Brazilian Journal of Botany, Springer, 41(1), pp. 209-218, ISSN: 0100-8404
    Details
    Publication Date: 2019-04-17
    Description: In fall 1995, during a survey in Abrolhos coral reef system (southwestern Atlantic, Brazil), significant densities (143–6174 cells L-1) of small thecate dinoflagellates were detected. Analysis of this material in scanning and transmission electron microscopy confirmed the presence of four taxa assigned to the potentially toxic genus Azadinium: A. dexteroporum Percopo et Zingone, A. luciferelloides Tillmann et Akselman, A. cf. polongum Tillmann and Azadinium sp. The latter taxon showed external morphological features quite distinct from any Azadinium taxon yet described, but its formal description as a new species depends on more detailed analysis. Species of Azadinium have never been confirmed in Brazilian waters until now, although the toxins produced by these dinoflagellates, the azaspiracids, have been detected in Brazilian southern coast without recognition of their producing organisms. The highest densities of Azadinium spp. occurred at stations south of and over the Abrolhos Bank, which receive higher nutrient concentrations due to upwelling of deep and nutrient-rich water masses.
    Repository Name: EPIC Alfred Wegener Institut
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  • 19
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    Sea-ice variability in the subarctic North Pacific and adjacent Bering Sea during the past 25 ka: new insights from IP25 and Uk′37 proxy records (2018)
    Springer
    In:  EPIC3Arktos, Springer, 4(8), pp. 1-19, ISSN: 2364-9453
    Details
    Publication Date: 2018-06-27
    Description: This study focusses on the last glacial–deglacial–Holocene spatial and temporal variability in sea-ice cover based on organic geochemical analyses of marine sediment cores from the subarctic Pacific and the Bering Sea. By means of the sea-ice proxy “IP25” and phytoplankton-derived biomarkers (specific sterols and alkenones), we reconstruct the spring sea-ice conditions, (summer) sea-surface temperature (SST) and primary productivity, respectively. The large variability of sea ice was explained by a combination of local and global factors, such as solar insolation, global climate anomalies and sea-level changes controlling the oceanographic circulation and water mass exchange between the subarctic Pacific and the Bering Sea. During the Last Glacial Maximum, extensive sea-ice cover prevailed over large part of the subarctic Pacific and the Bering Sea. The following deglaciation is characterized by a rapid sea-ice advance and retreat. During cold periods (Heinrich Stadial 1 and Younger Dryas) seasonal sea-ice cover generally coincided with low alkenone SSTs and low primary productivity. Conversely, during warmer intervals (Bølling/Allerød, Early Holocene) reduced sea-ice or ice-free conditions prevailed in the study area. At the northern Bering Sea continental shelf a late-Early/Mid Holocene shift to marginal sea-ice conditions is in line with the simultaneous wide-spread sea-ice recovery observed in the other Arctic marginal seas and is likely initiated by the lower Northern Hemisphere insolation and surface-water cooling.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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    Growth performance of hybrid striped bass (Morone chrysops × M. saxatilis) fed with commercial pike perch and trout diets (2018)
    Springer
    In:  EPIC3International Aquatic Research, Springer, 10(1), pp. 57-63
    Details
    Publication Date: 2018-09-28
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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    Laboratory activities for seismic and volcanic hazards education: a challenge for scientists (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Balanced information and education are fundamental prerequisites for risk prevention and preparedness. Among others, children embody our best chance to implant appropriate behaviors that will be recalled during hazardous situations and to involve adults according to a knowledge chain reaction. In this work, scientists challenge their communication skills to built a set of hands-on and learn-by-play based laboratory activities, for primary and secondary schools, addressing three major issues: (1) the location of earthquakes and volcanoes on Earth; (2) earthquakes and eruptions mechanisms; (3) earthquakes unpredictability. Students are asked to place volcanoes and earthquakes epicenters (issue 1) on a wooden plate puzzle according to Plate dynamics. To addresses eruption mechanisms (issue 2) and related hazard, we use backing soda forced blowing out from a volcano vent and suggest that a pyroclastic flow is fast, it can spread over a large area and raise high up to the stratosphere. Earthquake mechanisms (issue 2) are discussed describing the energy buildup, release, and transfer, using a wooden sticks bendand- break analogy. The display of acoustic waves caused by the breakage in different situations allows understanding of both the rupture energy and the wave attenuation. Earthquakes occurrence (issue 3) is addressed using steadily pulled blocks sliding on a frictional surface, where pins simulate asperities. These activities were tested, involving thousands of students. Discussions with students and teachers and the analysis of the answers to specific questionnaires gave us confidence that we proposed proper tools to raise risk awareness
    Description: Published
    Description: 89-93
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: restricted
    Keywords: Seismic and volcanic hazards, Outreach, Education ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Cloudy with a Chance of ideas! ( Piovono idee!): an interactive learning experience on hydrogeological risk and climate change (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: On October 25th 2011 a devastating flood hit the Vara and Magra valleys in Italy and left an unforgettable scratch in the inhabitants’ minds. Cloudy with a Chance of ideas! (Piovono idee!) is an active journey of discovery and training on hydrogeological risk and climate change. Land preservation and safety of people living on it are issues, which we would like to help citizens get perception about, in order to instill awareness on the actions that can be taken towards risk mitigation. Cloudy with a Chance of ideas! stemmed from this belief, and it is the result of a collaborative planning in which primary and secondary school students, living within cities heavily hit by the flood, took actively part. Children were helped by experts and scientists to build an exhibition devoted to hydrogeological risk. Here interactive workspaces, games and educational laboratories, allow visitors explore concepts, phenomena and their consequences on land and inhabitants. Issues are addressed from a daily actions perspective, where everybody might make the difference towards sustainability and trigger good practices on natural hazards risk reduction.
    Description: Published
    Description: 121-124
    Description: 4A. Clima e Oceani
    Description: restricted
    Keywords: hydrogeological risk, climate change, prevention, environmental impact, territory. ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Prediction of the shear wave velocity Vs from CPT and DMT at research sites (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: The paper examines the correlations to obtain rough estimates of the shear wave velocity VS from nonseismic dilatometer tests (DMT) and cone penetration tests (CPT). While the direct measurement of VS is obviously preferable, these correlations may turn out useful in various circumstances. The experimental results at six international research sites suggest that the DMT predictions of VS from the parameters ID (material index), KD (horizontal stress index), MDMT (constrained modulus) are more reliable and consistent than the CPT predictions from qc (cone resistance), presumably because of the availability, by DMT, of the stress history index KD.
    Description: Published
    Description: 83-92
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: N/A or not JCR
    Description: restricted
    Keywords: horizontal stress index ; shear wave velocity ; flat dilatometer test ; cone penetration test ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Perception of risk for volcanic hazard in Indian Ocean: La Réunion Island case study. (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: In 2011 a research project on volcanic risk assessment at La Réunion Island (Project Aléa, Institute de Physique du Globe de Paris, France) was conducted in order to determine more efficient strategies to manage future volcanic crises. The project included the evaluation of volcanic scenarios through field and historical data analysis, as well as a survey on volcanic risk perception in resident population. A clear scientific information and an effective communication with public play a crucial role in risk mitigation strategies. In particular, the evaluation of the public perception during both volcanic crises and dormant periods is an important element in developing actions focused on specific social and cultural contexts. A questionnaire was developed based on the ones used in similar researches conducted on Italian active volcanoes. Items were designed to measure variables connected with personal perception of hazard and risk, trust in mitigation actions and in information received about these aspects. In addition, specific items related to the peculiarities of La Réunion Island environment were included. A total of 2,000 questionnaires were distributed taking into account factors such as the proximity to the volcano and the involvement of communities in recent volcanic emergencies. Main results coming out from this survey, if on the one hand show an adequate residents’ perception of natural hazards, on the other hand highlight their poor knowledge of the island’ active volcano, a similar lacking knowledge of emergency plan for volcanic crises, but also a high confidence in scientists to provide accurate and reliable information on volcanic risk and hazards in contrast with Local Authorities. Remarkable findings of this study assess some key elements that should be considered by the institutions in charge for defining policies aimed to volcanic risk mitigation and management of future volcanic crises.
    Description: Unpublished
    Description: 1V. Storia e struttura dei sistemi vulcanici
    Description: reserved
    Keywords: risk perception, volcanic hazards ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
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    Engineering Geology for Society and Territory - Volume 7: Education, Professional Ethics and Public Recognition of Engineering Geology (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: This book is one out of 8 IAEG XII Congress volumes, and deals with education and the professional ethics, which scientists, regulators, and practitioners of engineering geology inevitably have to face through the purposes, methods, limitations, and findings of their works. This volume presents contributions on the professional responsibilities of engineering geologists; the interaction of engineering geologists with other professionals; recognition of the engineering geological profession and its particular contribution to society, culture, and economy; and implications for the education of engineering geologists at tertiary level and in further education schemes. Issues treated in this volume are: the position of engineering geology within the geo-engineering profession; professional ethics and communication; resource use and re-use; managing risk in a litigious world; engineering and geological responsibility; and engineering geology at tertiary level. The Engineering Geology for Society and Territory volumes of the IAEG XII Congress held in Torino from September 15-19, 2014, analyze the dynamic role of engineering geology in our changing world and build on the four main themes of the congress: Environment, processes, issues, and approaches.
    Description: Published
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: 5A. Energia e georisorse
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: open
    Keywords: Geoethics ; Geoeducation ; Professional Ethics ; Engineering Geology ; Communication ; Society ; Risks management ; Georesources ; Geological responsibility ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Natural Gas Seepage (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Published
    Description: 7A. Geofisica di esplorazione
    Description: reserved
    Keywords: Gas seepage, methane ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry
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    Geosystemics, entropy and criticality of earthquakes: a vision of our planet and a key of access (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Earth is a system of interconnected systems, whose complexity is far from being fully understood by a reductionist approach alone. In this chapter we introduce the concept of geosystemics and the use of the entropy to characterize some aspects of the phenomena under study. We will show how entropy and criticality of the system are central to better understand the most important general features of earthquakes. We will analyze two recent seismic sequences culminated with a main-shock (2009 L’Aquila and 2012 Emilia, both in Italy) to show the potential of this approach and to understand some important characteristics of the seismicity under scrutiny.
    Description: Published
    Description: 3-20
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: restricted
    Keywords: geosystemics, earthquake, complexity ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
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    Geoethical aspects in the natural hazards management (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: The defence against natural hazards involves many actors with different roles: geoscientists, decision makers, local authorities, mass media, citizens. A proper management of georisks requires that each role is well-defined and governed by shared operational protocols, especially during the emergency phase, so that overlapping and misunderstanding don’t jeopardize population safety and economic activities. To achieve good results in this direction, it is necessary to undertake a careful evaluation of the limits and expectations of each component of society and the respect of legitimate aspirations and prerogatives. An effective defence system against natural hazards should be planned rationally and based on scientific data, in order to avoid alarmism among citizens, misleading sensationalism by media, careless decisions by politicians, as well as approximation in managing different phases of the risk cycle. Taking into consideration geoethical aspects related to natural hazards can be helpful to make geoscientists aware of their responsibilities towards society and to clarify the role they can play in the interaction with other actors, aiming at more efficacious actions for georisk mitigation.
    Description: Published
    Description: 59-62
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: 4V. Vulcani e ambiente
    Description: 4A. Clima e Oceani
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: restricted
    Keywords: Geoethics ; Natural hazards ; Risks ; Society ; Responsibility ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.08. Risk::05.08.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
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    What’s the seismic risk perception in Italy? (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Risk perception is a fundamental element in the definition and the adoption of preventive counter-measures. In order to develop effective information and risk communication strategies, the perception of risks and the influencing factors should be known. This paper presents preliminary results of a survey on seismic risk perception in Italy. The research design combines a psychometric and a cultural theoretic approach. More than 5,000 on-line tests have been compiled from January 23rd till July 25th, 2013. The data collected show that in Italy seismic risk perception is strongly underestimated; 86 on 100 Italian citizens, living in the most dangerous zone (namely Zone 1), do not have a correct perception of seismic hazard. From these observations we deem that extremely urgent measures are required in Italy to reach an effective way to communicate seismic risk"This study has benefited from funding provided by the Italian Presidenza del Consiglio dei Ministri - Dipartimento di Protezione Civile (DPC). This paper does not necessarily represent DPC official opinion and policies".
    Description: Published
    Description: 69-75
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: open
    Keywords: Risk perception ; Seismic hazard ; Hazard communication ; Seismic risk ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous
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    Natural tritium determination in groundwater on Mt. Etna (Sicily, Italy) (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: Tritium is a naturally occurring radionuclide, due to interactions of cosmic-rays with the upper layers of the atmosphere; but its presence in the environment is mainly due to residual fallout from nuclear weapons atmosphere tests, carried out from 1952 till 1980. Tritium reaches the Earth’s surface mainly in the form of precipitation, becoming part of the hydrological cycle, then the interest of tritium content analysis in drinking water is both for dosimetry and health-risk and for using tritium as a natural tracer in the groundwater circulation system. This paper presents results from a survey carried out in the Mt. Etna area (east and west flanks) and in the southern side of Nebrodi in Sicily (Italy), in order to determine tritium activity concentrations in water samples by using liquid scintillation counter. The investigated areas show quite low tritium concentrations, much below the Italian limit of 100 Bq L-1 for drinking water and even comparable with the minimum detectable activity value. The effective dose due to tritium for public drinking water consumption was also evaluated.
    Description: Published
    Description: 861-866
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: JCR Journal
    Description: restricted
    Keywords: Tritium ; Tritiated water ; Liquid scintillation ; Mt. Etna ; Drinking water ; 03. Hydrosphere::03.04. Chemical and biological::03.04.07. Radioactivity and isotopes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Archeoseismology in Sicily: past earthquakes and effects on society (2015)
    Springer
    Details
    Publication Date: 2017-04-04
    Description: This work presents a review of archeological evidence of strong earthquakes occurring in Sicily at a time of Greek and Roman colonization, a period of considerable political, economic and social instability. In this historical context, the earthquake effects may have been obscured or overlooked to some extent and consequently the documentary information on ancient earthquakes, when available, is often sparse and lacking objectivity. The studied cases combine historical and archaeological data together with the evidence of structural damage to archaeological sites. Looking into past, the vocation of archaeoseismology lies in the identification of past seismic events, and particularly what the ancient society knew on earthquakes, and what kind of seismic effects produced on buildings and sites.
    Description: Unpublished
    Description: 491-504
    Description: 2T. Tettonica attiva
    Description: restricted
    Keywords: Archaeoseismology ; Historical seismicity ; 04. Solid Earth::04.06. Seismology::04.06.05. Historical seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    A comparative study of the diagenesis in diapir-influenced reef atolls and a fault block reef platform in the Late Albian of the Vasco-Cantabrian Basin (2018)
    Springer | Berlin [u.a.]
    Details
    Publication Date: 2021-04-25
    Keywords: 551 ; VKB 350 ; 38.20
    Language: English
    Type: anthologyArticle , publishedVersion
    Format: 186-209
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    Calcifying extracellular mucus substances (EMS) of Madrepora oculata (2018)
    Springer | Berlin [u.a.]
    Details
    Publication Date: 2021-04-25
    Description: Colonial non-zooxanthellate corals from deep-water coral reefs, Lophelia pertusa and Madrepora oculata, produce large amounts of extracellular mucus (EMS). This mucus has various functions, e.g., an antifouling capability protecting the coral skeleton from attacks of endolithic and boring organisms. Both corals show thick epithecal and exothecal skeletal parts with a clear lamellar growth pattern. The formation of the epitheca is unclear. It is supposed that the EMS play a central role during the calcification process of the epithecal skeletal parts. Staining with the fluorochrome tetracycline has shown an enrichment of Ca2+ ions in the mucus. In order to investigate this hypothesis, the protein content of the mucus and the intracrystalline organic matter from newly formed epithecal aragonite of Madrepora oculata was determined via sodium dodecyl sulfate (SDS) gel electrophoresis. Identical band patterns within both substances could be detected, one around 45 kDa molecular weight and a cluster around 30-35 kDa molecular weight. The occurrence of identical protein patterns within the mucus and in the newly formed aragonite confirms the idea that the mucus plays an important role during the organomineralization of the coral epitheca.
    Keywords: 551 ; VU 000 ; 38.20
    Language: English
    Type: anthologyArticle , publishedVersion
    Format: 731-744
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    Hydrogen incorporation in enstatite in the system MgO-SiO2-H2O-NaCl (2018)
    Springer
    Details
    Publication Date: 2021-03-29
    Description: The incorporation of hydrogen in enstatite in a hydrous system containing various amounts of NaCl was investigated at 25 kbar. The hydrogen content in enstatite shows a clear negative correlation to the NaCl-concentration in the system. The most favourable explanation is the reduction of water fugacity due to dilution. Other reasons for the limited hydrogen incorporation at high NaCl levels, such as a significant influence of Na+ on the defect chemistry or an exchange between OH- and Cl-in enstatite, appear much less important. A partition coefficient D Na En/Fluid = 0.0013 could be determined, demonstrating that Na is less incompatible in enstatite than H. The new results support the idea that dissolved components have to be considered when the total hydrogen storage capacity in nominally anhydrous minerals is estimated, especially in geological settings with high levels of halogens, such as subduction zones.
    Keywords: KEnstatite; Hydrogen incorporation;Water activity; Sodium; Chlorine ; 551
    Language: English
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    Mechanism of uranium fixation by zero valent iron: the importance of co-precipitation (2018)
    Springer | Berlin
    Details
    Publication Date: 2021-03-29
    Description: The coprecipitation of U (VI) with iron corrosion products from aqueous solutions by zero valent iron was investigated. The evidence of coprecipitation was demonstrated by conducting experiments with well characterized scrap iron,pyrite and a mixture of both materials with experimental durations of up to four months. Results indicate that under anoxic conditions only less than one tenth of the immobilized U(VI) was associated with the surface of scrap iron, whereas theremaining amount is entrapped in aging corrosion products.
    Keywords: 551
    Language: English
    Type: anthologyArticle , acceptedVersion
    Format: 577-586
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    Comparing Patterns of Spatial Relationships for Susceptibility Prediction of Landslide Occurrences (2018)
    Springer
    Details
    Publication Date: 2018-03-08
    Description: This contribution proposes a cautious way of constructing the susceptibility classes obtained from favourability modeling of landslide occurrences. It is based on the ranks of the numerical values obtained by the modelling. Such ranks can be displayed in the form of histograms, cumulative curves, and prediction patterns resembling maps. A number of models have been proposed and in this contribution the following will be compared in terms of their respective rankings for equal area classes: fuzzy set function, empirical likelihood ratio, linear and logistic regression, and Bayesian prediction function. The analyses performed and contrasted exemplify a generalized methodology for comparing predictions that should allow evaluating prediction patterns from any model. Unfortunately, many applications in the scientific literature use methods of characterizing prediction quality that make comparison hard or impossible. A database from a study area in the Mountain Community of Tirano in Valtellina, Lombardy Region, northern Italy, is used to illustrate how the results of the different models and strategies of analysis show the relevance of the properties of the database over those of the models.
    Description: Published
    Description: 1135-1144
    Description: 2TR. Ricostruzione e modellazione della struttura crostale
    Keywords: Landslide susceptibility, spatial support, spatial relationships, prediction models, prediction patterns, target pattern, ranked classes, cross-validation, database signature ; 04.04. Geology
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    Thermal Analysis of Volcanoes Based on 10 Years of ASTER Data on Mt. Etna (2018)
    Springer
    Details
    Publication Date: 2018-04-06
    Description: The EOS-1 Terra ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) has acquired about 200 images (100 of them sufficiently cloud-free to be used) over Mt. Etna since 1999. This chapter shows the results from the analysis of 10 years Mt Etna activity using thermal infrared (TIR) high spatial resolution data by a semi-automatic procedure that extracts radiance values of the summit area with the goal of detecting variation related to eruptive events. Night time data showed a good correlation with the main eruptive events that occurred both in the summit and in the flank areas. A comparison of the variance of maximum ASTER TIR radiance with variance of the maximum AVHRR TIR radiance (Advanced Very High Resolution Radiometer) for the same area confirms good correlation in terms of trend and values between the two data sets. Finally this study emphasizes the importance of high spatial resolution TIR data during background monitoring to detect changes in the thermal emission that may be related to an impending eruption and the need to further improve the spatial resolution in the TIR channels to better separate the thermal active areas in volcanic systems.
    Description: Published
    Description: 409-428
    Description: 5V. Dinamica dei processi eruttivi e post-eruttivi
    Description: 2SR. VULCANI - Servizi e ricerca per la Società
    Description: 5IT. Osservatori
    Keywords: Remote sensing observation, volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous
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    Natural Gas (2018)
    Springer
    Details
    Publication Date: 2018-02-16
    Description: No abstract
    Description: Published
    Description: 6A. Geochimica per l'ambiente
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    Natural Gas Seepage. The Earth’s hydrocarbon degassing (2018)
    Springer
    Details
    Publication Date: 2018-02-19
    Description: No abstract
    Description: Published
    Description: 6A. Geochimica per l'ambiente
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    Atmospheric Precipitable Water in Somma-Vesuvius Area During Extreme Weather Events from Ground-Based GPS Measurements (2018)
    Springer
    Details
    Publication Date: 2018-03-16
    Description: In this paper, we analyze the tropospheric delay observed on some ground-based CGPS stations in a dense small regional network and its time evolution during extreme weather conditions. In particular, we studied two severe weather events occurring in the Campanian Region (Italy) on October 12, 2012 and December 2, 2014, reaching 42 and 28 mm rainfall during about 1 h at Naples (MAFE) and Gragnano (GRAG) stations respectively. The main concern of this study is the retrieval of the precipitable water (PW) from co-located GPS and meteorological stations. We investigate the correlation between PW and rain amount at ground level. We analyse phase residuals for each visible GPS satellite using sky plots of the phase residuals along the GPS satellites tracks, showing that the two phenomena are shown in the phase residual plots. Moreover, we compare PWdata retrieved from observed meteorological data and from models (GPT2 and ECMWF), evidencing that there is a need for co-located CGPS and weather stations to improve the assessment of water content in the troposphere.
    Description: Published
    Description: 293-302
    Description: 4A. Oceanografia e clima
    Description: 7A. Geofisica per il monitoraggio ambientale e geologia medica
    Keywords: Precipitable water ; Tropospheric delay ; GPT2 ; ECMWF ; GPS ; 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Archive of Historical Earthquake Data for the European-Mediterranean Area (2018)
    Springer
    Details
    Publication Date: 2018-03-19
    Description: The importance of historical earthquake data is largely recognized by both seismologists and engineers, who use such data in a wide range of applications. At the European-Mediterranean scale, several databases dealing with historical earthquake data – mostly intensity data points – exist and are constantly maintained and updated, as well as national earthquake catalogues. In addition, a number of studies on historical earthquakes are published every year. Most of these activities are being performed at a national scale, depending on each country’s needs, and according to diverse methodologies. As a result, the earthquake history of Europe is today fragmented in a puzzle of different, only partially overlapping sets of data, which, at the continent scale, are not homogeneously collected and interpreted. This situation is particularly evident in the frontier areas, where historical earthquakes are often interpreted in a conflicting and/or partial way by the catalogues of the bordering countries. In addition, the background information upon which several historical catalogues are built is not published or not easily accessible. In recent years, a major effort was made to bridge over these gaps, by establishing cooperation among existing national databases, and creating new ones according to common standards. Particular attention was devoted to retrieve the earthquake background information, that is, the results of historical earthquake investigation in terms of a paper, a report, a book chapter, a map, etc. As most of the information on an historical earthquake can be summarized in a set of Macroseismic Data Points (MDPs) – i.e. a list of localities (name and coordinates) with a macroseismic intensity assessment and the related macroseismic scale – a dedicated effort was addressed to make such data publicly available. The described activities resulted in the European Archive of Historical Earthquake Data (AHEAD). The Archive is conceived as a pan-European common and open platform supporting the research activities in the field of historical seismology by (i) tracing back, preserving and granting access to the sources of data on the earthquake history of Europe (papers, reports, MDPs, and catalogues), and (ii) establishing relations among these data. AHEAD inventories multiple sets of information concerning each European earthquake in the time-window 1000–1899. The AHEAD web portal (http://www.emidius.eu/AHEAD/) gives access, as of today, to 4,722 earthquakes and the related background information as provided by 338 data sources. All these data can be queried by earthquake and by study, through a user-friendly web-interface. The distinguishing feature of AHEAD is to grant access not only to one study, but to all the available (published) data sources dealing with each individual earthquake, allowing researchers to take into account the different point of views and interpretations.
    Description: Published
    Description: 359-369
    Description: 3T. Storia Sismica
    Description: 4T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: 4IT. Banche dati
    Keywords: historical seismology ; seismicity ; historical earthquakes ; 04.06. Seismology ; 05.02. Data dissemination
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Changes in heat released by hydrothermal circulation monitored during an eruptive cycle at Mt. Etna (Italy) (2018)
    Springer
    Details
    Publication Date: 2019-03-26
    Description: The shallow vertical temperature profile has been measured in the proximity of an eruptive fissure far about 4 km north-northeast from Mt. Etna central craters. The monitoring site was a steam-heated soil lying between a group of flank fractures on the upper northeast flank of Mt. Etna (Italy), i.e., on the northeast rift. We chose this area because it was close to an eruptive fissure, that opened in 2002 and extended from about 2500 to about 1500 m a.s.l., with our aim being to determine a connection between this fracture system and the ongoing volcanic activity. Heat flux anomalies from the ground from September 2009 to September 2012 were evaluated. Changes in the hydrothermal release—which can be related to variations in volcanic activity—are discussed and compared to the published geophysical data. The heat flux ranges varied during the pre-eruptive (from about 7 to 38 W×m−2), syn-eruptive (from about 3 to 49W×m−2), and post-eruptive phases, with the heat released being lowest at the latter phase (from about 1 to 20 W×m−2). Moreover, the heat flux time variation was strongly correlated with the eruption rate from the new southeast crater between January 2011 and April 2012. The migration of magma through active conduits acts as a changing heating source for steam-heated soils located above the active fractures. Our findings suggest that tracking the heat flux above active fractures constitutes a useful investigation field for low-cost thermal monitoring of volcanic activity. Time variations in their emissions could highlight the relationship between a hydrothermal circuit and the local network of fractures, possibly indicating variation in the structural weakness of a volcanic edifice. Continuous monitoring of heat flux, combined with a realistic model, would contribute to multidisciplinary investigations aimed at evaluating changes in volcano dynamics.
    Description: National Department of Civil Protection
    Description: Published
    Description: 31
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: Volcanic activity ; Ground temperature ; Heat flux ; Continuous monitoring ; 04.08. Volcanology ; 05.04. Instrumentation and techniques of general interest
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    The behaviour of consolidated volcanic tuffs: weathering mechanisms under simulated laboratory conditions (2018)
    Springer
    Details
    Publication Date: 2021-03-29
    Description: Five volcanic tuffs ranging from dacitic tuffs of Hungary to rhyolite, phonolite and basaltic tuffs of Germany were consolidated under laboratory conditions. Prior to consolidation an anti-hygro, a hydrous consolidant, which reduces the swelling ability of clay minerals, was applied. The three consolidants, a silicic acid ester (SAE), an elastic silicic acid ester (eSAE) and an acrylate resin (PMMA) were applied on test specimens under vacuum. Petrographic characterisation (polarizing microscopy, XRD, SEM) provided data for fabric analyses and the mineral composition of the tuffs. Changes in fabric, effective porosity, density, tensile strength, ultrasonic wave velocity were evaluated after the treatment. Weathering simulation tests such as hygric dilatation and thermal dilatation aimed to prove the effectiveness of consolidation and the durability of consolidated tuff samples. More than 500 samples were analysed. The tests showed that SAE caused the highest increase in indirect tensile strength. The water absorption and the pore size distribution of the tuffs were modified by consolidation. The PMMA reduced the water absorption the most, whereas SAE modified it the least. All the tested consolidants increased the thermal dilatation of the tuffs. The changes in hygric dilatation were not uniform: for most tuffs SAE increased and PMMA decreased the hygric dilatation, although the clay-rich Habichtswald tuff showed the opposite trend. The changes in hygric and thermal behaviour of consolidated tuff require special care when specific consolidants are chosen. These products modify the physical properties of consolidated tuffs and change the behaviour of weathering.
    Keywords: Strengthening agents; Tuff; Silicic acid ester; PMMA; Durability ; 551
    Language: English
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    Seasonal variability of Holocene climate: a palaeolimnological study on varved sediments in Lake Jues (Harz Mountains, Germany) (2018)
    Springer | Springer
    Details
    Publication Date: 2021-03-29
    Keywords: Albrecht-von-Haller-Institut für Pflanzenwissenschaften / Abteilung für Palynologie und Klimadynamik ; Palaeolimnology; Holocene climate; Diatoms; Green algae; Pollen; Karst ; 551
    Language: English
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  • 45
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    Characterizing uranium solubilization under natural near oxic conditions (2018)
    Springer | Berlin/Heidelberg
    Details
    Publication Date: 2021-03-29
    Description: A 782 d solubilization study using not shaken batch experiments and involving one uranium-bearing rock and three natural carbonate minerals was conducted to characterize uranium (U) leaching under oxic conditions. Results showed that aqueous U concentration increased continuously with a solubilization rate of 0.16 mgm-2h-1 for the first 564 d (1.5 y). After 1.5 y, U concentration reached a maximum value (saturation) and decreased afterwards. The saturation concentration of 54 mgL-1 (mean value) was influenced to various extent by the presence of carbonate minerals. Dissolution/precipitation, adsorption or ion exchange processes appear to control U solubilization.
    Keywords: 551
    Language: English
    Type: anthologyArticle , acceptedVersion
    Format: 425-435
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  • 46
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    Phylogenetic aspects and new descriptions of Spicule-Bearing, Hadromerid Sponges with a secondary calcareous skeleton (Tetractinomorpha, Demospongiae) (2018)
    Springer | Berlin [u.a.]
    Details
    Publication Date: 2021-04-25
    Keywords: 551 ; VU 000 ; 38.20
    Language: English
    Type: anthologyArticle , publishedVersion
    Format: 179-211
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    The fossil record of the Haplosclerid excavating sponge Aka de Laubenfels (2018)
    Springer | Berlin [u.a.]
    Details
    Publication Date: 2021-04-25
    Keywords: 551 ; VU 000 ; 38.20
    Language: English
    Type: anthologyArticle , publishedVersion
    Format: 102-120
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  • 48
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    Renewed study of the type material of Palaeospongilla chubutensis Ott and Volkheimer (1972) (2018)
    Springer | Berlin [u.a.]
    Details
    Publication Date: 2021-04-25
    Keywords: 551 ; VU 000 ; 38.20
    Language: English
    Type: anthologyArticle , publishedVersion
    Format: 121-133
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  • 49
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    A comparison of surface and underground array measurements of ambient noise recorded in Naples (Italy). (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: Abstract In this study, we describe two experiments of seismic noise measurements carried out in Naples, Italy. The site allowed measurements to be obtained both at the surface and in a tunnel that is 120-m-deep. The main goal was to compare the seismic response evaluated at the surface to the in-tunnel response, through spectral, polarization, and resonance directivity analyses. In the 1 to 20 Hz frequency band, the noise level was up to 15 dB higher at the surface than in the tunnel. The polarization properties and horizontal-to-vertical spectral ratios appear not to be influenced by the tunnel geometry or by the topography. Some preferential alignments were observed in the polarization azimuths computed at the surface, which are likely to be due to local sources, rather than morphological features. The absence of directivity effects and the low noise levels in the tunnel make this site suitable for installing seismic stations. We also studied how the subsoil structure affects the seismic motion at the surface. The dispersive properties of the Rayleigh waves were investigated using the spatial autocorrelation method. A joint inversion of the dispersion data and the horizontal-to-vertical spectral ratios provided the subsurface Vs profile. The derived model has a low velocity contrast at depth, such as to generate moderate and broad H/V spectral ratio peak amplitude. The normalized spectral ratio appears more appropriate to identify the soil-resonance frequencies.
    Description: Published
    Description: 385 - 400
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: seismic noise ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
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    Seismic Microzonation in a Small Municipality: The Canazei Case Study (Trentino, N Italy) (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: The results of a detailed seismic microzonation study performed at Canazei (Trentino—Northern Italy) are here presented. We investigated the local seismic response of this small village using a Level 3 seismic microzonation, the most accurate according to the Italian Code of Seismic Microzonation. This method consists of gradual steps of knowledge to consider different aspects of the amplification phenomena. A multidisciplinary approach has been performed, including a local geological study, geophysical investigations, geotechnical characterization of lithologies and numerical analyses. The obtained elastic response spectra were compared to the spectra prescribed by the Italian Building Code. Our results show the geologic and geophysical subsoil heterogeneities, responsible for different local seismic responses in terms of acceleration spectra and amplification factors.
    Description: Published
    Description: 1085-1089
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: reserved
    Keywords: Seismic microzonation ; Response spectra ; Amplification factor ; Canazei ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion ; 04. Solid Earth::04.06. Seismology::04.06.06. Surveys, measurements, and monitoring ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Geoscientific Communication Problem with Communities for Disaster Prevention and Land Planning in Peru (2015)
    Springer
    Details
    Publication Date: 2020-02-24
    Description: The communication process between the geoscientists and native communities in risk areas can significantly affect disaster prevention and land use planning. In Peru, the problem of disaster prevention is a fundamental policy due to unfamiliarity and deficiency of the associate information on the population. It is possible that talk of disaster prevention it will be an unlikely ideal in a country where most towns have settled on unplanned projects by the constant change and the lack of interest from the authorities in such topics. However, it is anachronistic that the rural communities and towns continue to live without a plan to enable them to improve their quality of life. The correct use of geoscience information in the mass media can help in this work. The characteristics of the enterprise in Peru require more training by professionals in the geosciences and support communication specialists. In this paper, we analyze the problem of communication for disaster prevention in Peru, with the aim of contributing to the articulation of a disaster prevention strategy.
    Description: Published
    Description: 81-83
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: 4V. Vulcani e ambiente
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: reserved
    Keywords: Communication process ; Disaster prevention ; Risk management ; Peru ; Geoethics ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.03. Educational, History of Science, Public Issues::05.03.99. General or miscellaneous ; 05. General::05.08. Risk::05.08.99. General or miscellaneous ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
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    The Kongsfjorden Channel System offshore NW Svalbard: downslope sedimentary processes in a contour-current-dominated setting (2015)
    Springer
    In:  EPIC3Arktos, Springer, 1(1), ISSN: 2364-9453
    Details
    Publication Date: 2017-01-03
    Description: Submarine channel systems on and off glaciated continental margins can be up to hundreds of kilometres long, tens of kilometres wide and hundreds of metres deep. They result from repeated erosion and various downslope processes predominantly during glacial periods and can, therefore, provide valuable tools for the reconstruction of past ice-sheet dynamics. The Kongsfjorden Channel System (KCS) on the continental slope off northwest Svalbard provides evidence that downslope sedimentary processes are locally more dominant than regional along-slope sedimentation. It is a relatively short channel system (*120 km) that occurs at a large range of water depths (*250–4000 m) with slope gradients varying between 0 and 20. Multiple gullies on the Kongsfjorden Trough Mouth Fan merge to small channels that further merge to a main channel. The overall location of the channel system is controlled by variations in slope gradients and the ambient regional bathymetry. The widest and deepest incisions occur in areas of the steepest slope gradients. The KCS has probably been active since *1 Ma when glacial activity on Svalbard increased and grounded ice expanded to the shelf break off Kongsfjorden repeatedly. Activity within the system was probably highest during glacials. However, reduced activity presumably took place also during interglacials.
    Repository Name: EPIC Alfred Wegener Institut
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    Recent foraminifera in the Arctic Ocean and Kara Sea continental margin (2015)
    Springer
    In:  EPIC3Arktos, Springer, pp. 0-17
    Details
    Publication Date: 2016-02-28
    Repository Name: EPIC Alfred Wegener Institut
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    Pteropod sedimentation patterns in different water depths observed with moored sediment traps over a 4-year period at the LTER station HAUSGARTEN in eastern Fram Strait (2015)
    Springer
    In:  EPIC3Polar Biol, Springer, ISSN: 0722-4000
    Details
    Publication Date: 2015-02-10
    Description: Pteropods are important organisms in highlatitude ecosystems, and they are expected to severely suffer from climate change in the near future. In this study, sedimentation patterns of two pteropod species, the polar Limacina helicina and the subarctic boreal L. retroversa, are presented. Time series data received by moored sediment traps at the Long-Term Ecological Research (LTER) Observatory HAUSGARTEN in eastern Fram Strait were analyzed during the years 2008 to 2012. Results were derived from four different deployment depths (200, 1,250, 2,400, and 2,550 m) at two different sites (79°N 04'200E; 79°430N 04'300E). A species-specific sedimentation pattern was present at all depths and at both sites showing maximal flux rates during September/October for L. helicina and in November/December for L. retroversa. The polar L. helicina was outnumbered by L. retroversa (55–99 %) at both positions and at all depths supporting the recently observed trend toward the dominance of the subarctic boreal species. The largest decrease in pteropod abundance occurred within the mesopelagic zone (*200–1,250 m), indicating loss via microbial degradation and grazing. Pteropod carbonate (aragonite) amounted up to *75 % of the total carbonate flux at 200 m and 2–13 % of the aragonite found in the shallow traps arrived at the deep sediment traps (*160 m above the seafloor), revealing the significance of pteropods in carbonate export at Fram Strait. Our results emphasize the relevance and the need for continuation of long-term studies to detect and trace changes in pteropod abundances and community composition and thus in the vertical transport of aragonite.
    Repository Name: EPIC Alfred Wegener Institut
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  • 55
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    Annual changes of aerosol optical depth and Ångström exponent over Spitsbergen (2015)
    Springer
    In:  EPIC3Free Preview Impact of Climate Changes on Marine Environments, Book, Springer, 15 p., pp. 23-37, ISBN: 978-3-319-14282-1
    Details
    Publication Date: 2020-03-05
    Description: This book contributes to the current discussion on global environmental changes by discussing modifications in marine ecosystems related to global climate changes. In marine ecosystems, rising atmospheric CO2 and climate changes are associated with shifts in temperature, circulation, stratification, nutrient input, oxygen concentration and ocean acidification, which have significant biological effects on a regional and global scale. Knowing how these changes affect the distribution and abundance of plankton in the ocean currents is crucial to our understanding of how climate change impacts the marine environment. Ocean temperatures, weather and climatic changes greatly influence the amount and location of nutrients in the water column. If temperatures and currents change, the plankton production cycle may not coincide with the reproduction cycle of fish. The above changes are closely related to the changes in radiative forcing, which initiate feedback mechanisms like changes in surface temperature, circulation, and atmospheric chemistry.
    Repository Name: EPIC Alfred Wegener Institut
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    Mineral dust variability in Antarctic ice for different climate conditions (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics, Springer Briefs in Earth System Sciences, Heidelberg, Springer, pp. 89-95, ISBN: 978-3-319-00692-5
    Details
    Publication Date: 2015-04-07
    Description: This study aims to understand the dust deposition changes on the Antarctic ice sheet in different climatic stages. To this end high resolution dust concentration and size profiles from the EPICA-DML ice core over the transition from the last Glacial to the Holocene (T1) were combined with model experiments for four interglacial time slices and the Last Glacial Maximum (LGM). A strong decrease in dust concentration (factor 46) and a slight increase in dust size was observed during T1. A strong coupling between transport and intensified sources during the Glacial could be derived from the seasonal variability of concentration and size and its phase-lag. This strong coupling vanishes during the Holocene. The model simulates increased dust deposition in Antarctica for all past interglacial time slices compared to the pre-industrial period. The major cause for the increase is enhanced Southern Hemisphere dust emission, but changes in atmospheric transport are also relevant. The maximum dust deposition in Antarctica is simulated for the LGM, showing a 10-fold increase compared to preindustrial conditions.
    Repository Name: EPIC Alfred Wegener Institut
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    Cell-vertex discretization of shallow water equations on mixed unstructured meshes (2015)
    Springer
    In:  EPIC3Ocean Dynamics, Springer, 65(1), pp. 33-47, ISSN: 1616-7341
    Details
    Publication Date: 2015-02-10
    Description: Finite-volume discretizations can be formulated on unstructured meshes composed of different polygons. A staggered cell-vertex finite-volume discretization of shallow water equations is analyzed on mixed meshes composed of triangles and quads. Although triangular meshes are most flexible geometrically, quads are more efficient numerically and do not support spurious inertial modes of triangular cell- vertex discretization. Mixed meshes composed of triangles and quads combine benefits of both. In particular, triangular transitional zones can be used to join quadrilateral meshes of differing resolution. Based on a set of examples involving shallow water equations, it is shown that mixed meshes offer a viable approach provided some background biharmonic viscosity (or the biharmonic filter) is added to stabilize the triangular part of the mesh.
    Repository Name: EPIC Alfred Wegener Institut
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    Snow Accumulation In North Greenland Over The Last Millenium (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, Springer Earth System Sciences, Heidelberg, Springer, 9 p., pp. 197-205, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2016-11-14
    Description: Knowledge of snow accumulation rates of the large polar ice sheets and their variability over time is crucial for mass budget studies and sea level predictions. Here we present mean long-term snow accumulation rates of 12 shallow ice cores drilled by the North Greenland traverse in the northern part of Greenland. The ice core records cover the last 500 to 1000 years. We find a trend of decreasing accumulation rate from the southwest (~180 mmWE/a) to northeast (~95 mmWE/a). Ice divide sites show higher accumulation rates but also higher variability (up to 20%) than sites off the ice divides (less than 10%). Unlike a recent modeling study our results indicate no change in the accumulation in the north of Greenland during the last 400 years
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    Bivalve Shells—Unique High-Resolution Archives of the Environmental Past (2015)
    Springer
    In:  EPIC3Towards an Interdisciplinary Approach in Earth System Science, (Springer Earth System Sciences), Heidelberg [u.a.], Springer, 251 p., pp. 173-182, ISBN: 978-3-319-13864-0
    Details
    Publication Date: 2015-02-11
    Description: Understanding the climate of the past is essential for anticipating future climate change. Palaeoclimatic archives are the key to the past, but few marine archives (including tropical corals) combine long recording times (decades to centuries) with high temporal resolution (decadal to intra-annual). In temperate and polar regions carbonate shells can perform the equivalent function as a proxy archive as corals do in the tropics. The bivalve Arctica islandica is a particularly unique bio-archive owing to its wide distribution throughout the North Atlantic and its extreme longevity (up to 500 years). This paper exemplifies how information at intra-annual and decadal scales is derived from A. islandica shells and combined into a detailed picture of past conditions. Oxygen isotope analysis (δ18O) provides information on the intra-annual temperature cycle while frequency analysis of shell growth records identifies decadal variability such as a distinct 5-year signal, which might be linked to the North Atlantic Oscillation.
    Repository Name: EPIC Alfred Wegener Institut
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    A Sediment Budget for the Transkei Basin, Southwest Indian Ocean (2015)
    Springer
    In:  EPIC3Marine Geophysical Reseach, Springer, 36, pp. 281-291
    Details
    Publication Date: 2015-11-06
    Description: Deep sea sediment budgets can be used to constrain erosion rates in the neighboring continents from which the material was derived. Here we construct a sediment budget for the Transkei Basin, offshore South Africa using an existing seismic reflection survey and dated by correlation of seismic attributes to dated sections in nearby basins. Backstripping of the sections reveals that sediment accumulation rates fell from 110 to 11 Ma, with a possible period of rapid accumulation from 36 to 34 Ma that may be driven by strengthening of the Antarctic Bottom Water (AABW). The long term trend is linked to erosional degradation of the onshore continental escarpment, formed as a consequence of continental break-up. No change is noted at 30 Ma, coincident with proposed uplift of southern Africa driven by plume activity. The basin shows a significant increase in sediment accumulation after 11 Ma, which we interpret to reflect strengthening and rerouting of the AABW from the south into Transkei Basin, as a far field effect of the start of closure of the Indonesian Throughflow.
    Repository Name: EPIC Alfred Wegener Institut
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  • 61
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    Evaluation of Eemian and Holocene Climate Trends: Combining Marine Archives with Climate Modelling (2015)
    Springer
    In:  EPIC3Integrated Analysis of Interglacial Climate Dynamics (INTERDYNAMIC), SpringerBriefs in Earth System Sciences, Germany, Springer, 5 p., pp. 31-35, ISBN: 978-3-319-00693-2
    Details
    Publication Date: 2015-06-05
    Description: In an attempt to assess trends of Holocene sea-surface temperature (SST), two proxies have been compiled and analyzed in light of model simulations. The data reveal contrasting SST trends, depending upon the proxy used to derive Holocene SST history. To reconcile these mismatches between proxies in the estimated Holocene SST trends, it has been proposed that the Holocene evolution of orbitally-driven seasonality of the incoming radiation is the first-order driving mechanism of the observed SST trends. Such hypothesis has been further tested in numerical models of the Earth system with important implications for SST signals ultimately recorded by marine sediment cores. The analysis of model results and alkenone proxy data for the Holocene indicate a similar pattern in temperature change, but the simulated SST trends underestimate the proxy-based SST trends by a factor of two to five. SST trends based on Mg/Ca show no correspondence with model results. We explore whether the consideration of different growing seasons and depth habitats of the planktonic organisms used for temperature reconstruction could lead to a better agreement of model results with alkenone data on a regional scale. We found that invoking shifts in the living season and habitat depth can remove some of the model–data discrepancies in SST trends. Our results indicate that modeled and reconstructed temperature trends are to a large degree only qualitatively comparable, thus providing at present a challenge for the interpretation of proxy data as well as the model sensitivity to orbital forcing.
    Repository Name: EPIC Alfred Wegener Institut
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    Marble bowing: comparative studies of three different public building facades (2018)
    Springer
    Details
    Publication Date: 2021-03-29
    Description: The veneer cladding of the Oeconomicum (OEC, Göttingen), the State Theatre of Darmstadt (STD, Darmstadt) and of the State and University Library (SUB, Göttingen) is characterised by pronounced bowing after a short time of exposure. Direct comparison of bowing data related to measurements from 2000 to 2003 at the SUB clearly show that the amplitude in bowing had significantly increased. The bowing is different in intensity and orientation (concave, convex). The cladding material (Peccia marble, Rosa Estremoz marble and Carrara marble) are different in lattice preferred orientation, grain size distribution and grain interlocking. Depending on the bowing, panels may show cracks mostly initiated at the dowels. The percentage of visible cracks and breakouts increases with the amplitude of bowing except for the STD. Repetitive heatingcooling under dry conditions leads to considerable inelastic residual strain only after the first or second thermal cycle. The residual strain continuously increases again if water is present, whereby the moisture content after a thermal cycle has a certain impact on the decay rate. The water-enhanced thermal dilatation strongly correlates with the deterioration rate obtained from the laboratory bow test. Detailed petrophysical investigations provide evidence that with increasing bowing a decrease of mechanical properties (flexural strength or breaking load at dowel hole) occur. Marble degradation is also connected with the increase in porosity and a general shift of the maximum pore radii to larger pore sizes...
    Keywords: Bowing; Marble; Building mapping;Residual strain;Thermal expansion; Bowing potential ; 551
    Language: English
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    Cyclonic eddies and upper thermocline fine-scale structures in the Antarctic Circumpolar Current (2018)
    Springer
    In:  EPIC3Ocean Dynamics, Springer, pp. 1-17
    Details
    Publication Date: 2019-01-23
    Description: Mesoscale eddies in the open ocean are mostly formed by baroclinic instability, in which the available potential energy from the large-scale slope of the isopycnals is converted into the kinetic energy of the flow around the eddy. As a permissible form of motion within a rapidly rotating and stratified fluid eddies driven by baroclinic instability are important for the poleward and vertical transport, not only of physical properties, but also biogeochemical ones. In this paper, we present observations from four cyclonic eddies in the Antarctic Circumpolar Current. We have sorted them by apparent age, based on altimeter data and consideration of the degree of homogenisation of the potential temperature-salinity(θS) relationship, and then looked at the spatial distribution of measures of fine-scale variability in the upper thermocline. The youngest eddy shows isopycnals which are domed upwards and it contains a variety of waters with differing temperature-salinity characteristics. The fine-scale variability is higher in the core of the eddy. The older eddies show a core which is more homogeneous in potential temperature and salinity. The isopycnals are flatter in the centre of the eddy, and in cross-section, they can be M-shaped, so that the steepest gradients are concentrated around the edge. The fine-scale variability is more concentrated around the edges where the density gradients are stronger. We hypothesise that lateral stirring and mixing processes within the eddy homogenise the water so that the temperature-salinity relationship becomes tighter. When the eddy eventually collapses, this modified water can be released back into the flow. Thus, we see how the interplay of mesoscale and small-scale processes are modifying water mass properties and, potentially, regulate biogeochemical processes.
    Repository Name: EPIC Alfred Wegener Institut
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    Single-cell transcriptomics: Gotta catch ‘em all! (2018)
    Springer
    In:  EPIC3YOUMARES 8 - Ocean across boundaries: Learning from each other, Kiel, Germany, 2017-09-13-2017-09-15Cham, Springer
    Details
    Publication Date: 2019-09-13
    Repository Name: EPIC Alfred Wegener Institut
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    Social recognition in amphipods: An overview (2015)
    Springer
    In:  EPIC3Social recognition in invertebrates - The knowns and the unknowns, Springer, 16 p., pp. 85-100, ISBN: 978-3-319-17599-7
    Details
    Publication Date: 2015-06-02
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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    TurtleCam : a “smart” autonomous underwater vehicle for investigating behaviors and habitats of sea turtles (2018)
    Frontiers Media
    Details
    Publication Date: 2018-05-08
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 90, doi:10.3389/fmars.2018.00090.
    Description: Sea turtles inhabiting coastal environments routinely encounter anthropogenic hazards, including fisheries, vessel traffic, pollution, dredging, and drilling. To support mitigation of potential threats, it is important to understand fine-scale sea turtle behaviors in a variety of habitats. Recent advancements in autonomous underwater vehicles (AUVs) now make it possible to directly observe and study the subsurface behaviors and habitats of marine megafauna, including sea turtles. Here, we describe a “smart” AUV capability developed to study free-swimming marine animals, and demonstrate the utility of this technology in a pilot study investigating the behaviors and habitat of leatherback turtles (Dermochelys coriacea). We used a Remote Environmental Monitoring UnitS (REMUS-100) AUV, designated “TurtleCam,” that was modified to locate, follow and film tagged turtles for up to 8 h while simultaneously collecting environmental data. The TurtleCam system consists of a 100-m depth rated vehicle outfitted with a circular Ultra-Short BaseLine receiver array for omni-directional tracking of a tagged animal via a custom transponder tag that we attached to the turtle with two suction cups. The AUV collects video with six high-definition cameras (five mounted in the vehicle nose and one mounted aft) and we added a camera to the animal-borne transponder tag to record behavior from the turtle's perspective. Since behavior is likely a response to habitat factors, we collected concurrent in situ oceanographic data (bathymetry, temperature, salinity, chlorophyll-a, turbidity, currents) along the turtle's track. We tested the TurtleCam system during 2016 and 2017 in a densely populated coastal region off Cape Cod, Massachusetts, USA, where foraging leatherbacks overlap with fixed fishing gear and concentrated commercial and recreational vessel traffic. Here we present example data from one leatherback turtle to demonstrate the utility of TurtleCam. The concurrent video, localization, depth and environmental data allowed us to characterize leatherback diving behavior, foraging ecology, and habitat use, and to assess how turtle behavior mediates risk to impacts from anthropogenic activities. Our study demonstrates that an AUV can successfully track and image leatherback turtles feeding in a coastal environment, resulting in novel observations of three-dimensional subsurface behaviors and habitat use, with implications for sea turtle management and conservation.
    Description: This research was funded by National Oceanic and Atmospheric Administration Grant #NA16NMF4720074 to the Massachusetts Division of Marine Fisheries under the Species Recovery Grants to States program. Additional funding was provided by Jean Tempel, Hydroid Inc., and over 100 Project WHOI donors.
    Keywords: Autonomous underwater vehicle AUV ; CTD ; Entanglement ; Habitat ; Foraging behavior ; Jellyfish ; Leatherback sea turtle ; Video camera
    Repository Name: Woods Hole Open Access Server
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    High grazing rates on cryptophyte algae in Chesapeake Bay (2018)
    Frontiers Media
    Details
    Publication Date: 2018-07-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 241, doi:10.3389/fmars.2018.00241.
    Description: Cryptophyte algae are globally distributed photosynthetic flagellates found in freshwater, estuarine, and neritic ecosystems. While cryptophytes can be highly abundant and are consumed by a wide variety of protistan predators, few studies have sought to quantify in situ grazing rates on their populations. Here we show that autumnal grazing rates on in situ communities of cryptophyte algae in Chesapeake Bay are high throughout the system, while growth rates, particularly in the lower bay, were low. Analysis of the genetic diversity of cryptophyte populations within dilution experiments suggests that microzooplankton may be selectively grazing the fastest-growing members of the population, which were generally Teleaulax spp. We also demonstrate that potential grazing rates of ciliates and dinoflagellates on fluorescently labeled (FL) Rhodomonas salina, Storeatula major, and Teleaulax amphioxeia can be high (up to 149 prey predator−1 d−1), and that a Gyrodinium sp. and Mesodinium rubrum could be selective grazers. Potential grazing was highest for heterotrophic dinoflagellates, but due to its abundance, M. rubrum also had a high overall impact. This study reveals that cryptophyte algae in Chesapeake Bay can experience extremely high grazing pressure from phagotrophic protists, and that this grazing likely shapes their community diversity.
    Description: The authors thank the National Science Foundation (OCE 1031718 and 1436169) for providing support for this research.
    Keywords: Cryptophytes ; Mixotrophy ; Grazing ; Chesapeake Bay ; Dinoflagellates ; Mesodinium rubrum
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    Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula (2015)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 647, doi:10.3389/fmicb.2014.00647.
    Description: The Southern Ocean is currently subject to intense investigations, mainly related to its importance for global biogeochemical cycles and its alarming rate of warming in response to climate change. Microbes play an essential role in the functioning of this ecosystem and are the main drivers of the biogeochemical cycling of elements. Yet, the diversity and abundance of microorganisms in this system remain poorly studied, in particular with regards to changes along environmental gradients. Here, we used amplicon sequencing of 16S rRNA gene tags using primers covering both Bacteria and Archaea to assess the composition and diversity of the microbial communities from four sampling depths (surface, the maximum and minimum of the oxygen concentration, and near the seafloor) at 10 oceanographic stations located in Bransfield Strait [northwest of the Antarctic Peninsula (AP)] and near the sea ice edge (north of the AP). Samples collected near the seafloor and at the oxygen minimum exhibited a higher diversity than those from the surface and oxygen maximum for both bacterial and archaeal communities. The main taxonomic groups identified below 100 m were Thaumarchaeota, Euryarchaeota and Proteobacteria (Gamma-, Delta-, Beta-, and Alphaproteobacteria), whereas in the mixed layer above 100 m Bacteroidetes and Proteobacteria (mainly Alpha- and Gammaproteobacteria) were found to be dominant. A combination of environmental factors seems to influence the microbial community composition. Our results help to understand how the dynamic seascape of the Southern Ocean shapes the microbial community composition and set a baseline for upcoming studies to evaluate the response of this ecosystem to future changes.
    Description: This work was supported by the Brazilian National Counsel of Technological and Scientific Development (Polar Canion CNPq 556848/2009-8, ProOasis CNPq 565040/2010-3, Interbiota CNPq 407889/2013-2 and INCT-MAR-COI). Alex Enrich-Prast received a CNPq Productivity fellowship. Camila N. Signori was supported by a WHOI Mary Sears Visitor Award (for the microbial community analyses) and by the Brazilian Federal Agency for Support and Evaluation of Graduate Education (CAPES) for the “Doctorate Sandwich” scholarship (n. 18835/12-0).
    Keywords: Antarctica ; Pyrosequencing ; Microbial community structure ; Environmental factors ; Microbial oceanography ; Climate change
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    The gut microbiota of rural Papua New Guineans : composition, diversity patterns, and ecological processes (2015)
    Cell Press
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cell Reports 11 (2015): 1-12, doi:10.1016/j.celrep.2015.03.049.
    Description: Although recent research revealed an impact of westernization on diversity and composition of the human gut microbiota, the exact consequences on metacommunity characteristics are insufficiently understood, and the underlying ecological mechanisms have not been elucidated. Here, we have compared the fecal microbiota of adults from two non-industrialized regions in Papua New Guinea (PNG) with that of United States (US) residents. Papua New Guineans harbor communities with greater bacterial diversity, lower inter-individual variation, vastly different abundance profiles, and bacterial lineages undetectable in US residents. A quantification of the ecological processes that govern community assembly identified bacterial dispersal as the dominant process that shapes the microbiome in PNG but not in the US. These findings suggest that the microbiome alterations detected in industrialized societies might arise from modern lifestyle factors limiting bacterial dispersal, which has implications for human health and the development of strategies aimed to redress the impact of westernization.
    Description: This study was partly funded by BioGaia AB. BioGaia had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. A portion of this research is part of the Microbiomes in Transition Initiative at Pacific Northwest National Laboratory (PNNL). This research was conducted under the Laboratory Directed Research and Development Program at PNNL, a multi-program national laboratory operated by Battelle for the US Department of Energy under contract DE-AC05-76RL01830.
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    Character, distribution, and ecological significance of storm wave-induced scour in Rhode Island Sound, USA (2015)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Geo-Marine Letters 35 (2015): 135-144, doi:10.1007/s00367-014-0392-0.
    Description: Multibeam bathymetry, collected during NOAA hydrographic surveys in 2008 and 2009, is coupled with USGS data from sampling and photographic stations to map the seabed morphology and composition of Rhode Island Sound along the US Atlantic coast, and to provide information on sediment transport and benthic habitats. Patchworks of scour depressions cover large areas on seaward-facing slopes and bathymetric highs in the sound. These depressions average 0.5–0.8 m deep and occur in water depths reaching as much as 42 m. They have relatively steep well-defined sides and coarser-grained floors, and vary strongly in shape, size, and configuration. Some individual scour depressions have apparently expanded to combine with adjacent depressions, forming larger eroded areas that commonly contain outliers of the original seafloor sediments. Where cobbles and scattered boulders are present on the depression floors, the muddy Holocene sands have been completely removed and the winnowed relict Pleistocene deposits exposed. Low tidal-current velocities and the lack of obstacle marks suggest that bidirectional tidal currents alone are not capable of forming these features. These depressions are formed and maintained under high-energy shelf conditions owing to repetitive cyclic loading imposed by high-amplitude, long-period, storm-driven waves that reduce the effective shear strength of the sediment, cause resuspension, and expose the suspended sediments to erosion by wind-driven and tidal currents. Because epifauna dominate on gravel floors of the depressions and infauna are prevalent in the finer-grained Holocene deposits, it is concluded that the resultant close juxtaposition of silty sand-, sand-, and gravel-dependent communities promotes regional faunal complexity. These findings expand on earlier interpretations, documenting how storm wave-induced scour produces sorted bedforms that control much of the benthic geologic and biologic diversity in Rhode Island Sound.
    Description: This work was supported by the Coastal and Marine Geology Program of the U.S. Geological Survey and the Atlantic Hydrographic Branch of the National Oceanic and Atmospheric Administration.
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    Characterizing the duration and severity of fishing gear entanglement on a North Atlantic right whale (Eubalaena glacialis) using stable isotopes, steroid and thyroid hormones in baleen (2018)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 168, doi:10.3389/fmars.2018.00168.
    Description: North Atlantic right whales (Eubalaena glacialis) are highly endangered and frequently exposed to a myriad of human activities and stressors in their industrialized habitat. Entanglements in fixed fishing gear represent a particularly pervasive and often drawn-out source of anthropogenic morbidity and mortality to the species. To better understand both the physiological response to entanglement, and to determine fundamental parameters such as acquisition, duration, and severity of entanglement, we measured a suite of biogeochemical markers in the baleen of an adult female that died from a well-documented chronic entanglement in 2005 (whale Eg2301). Steroid hormones (cortisol, corticosterone, estradiol, and progesterone), thyroid hormones (triiodothyronine (T3) and thyroxine (T4)), and stable isotopes (δ13C and δ15N) were all measured in a longitudinally sampled baleen plate. This yielded an 8-year profile of foraging and migration behavior, stress response, and reproduction. Stable isotopes cycled in annual patterns that reflect the animal's north-south migration behavior and seasonally abundant zooplankton diet. A progesterone peak, lasting approximately 23 months, was associated with the single known calving event (in 2002) for this female. Estradiol, cortisol, corticosterone, T3, and T4 were also elevated, although variably so, during the progesterone peak. This whale was initially sighted with a fishing gear entanglement in September 2004, but the hormone panel suggests that the animal first interacted with the gear as early as June 2004. Elevated δ15N, T3, and T4 indicate that Eg2301 potentially experienced increased energy expenditure, significant lipid catabolism, and thermal stress approximately 3 months before the initial sighting with fishing gear. All hormones in the panel (except cortisol) were elevated above baseline by September 2004. This novel study illustrates the value of using baleen to reconstruct recent temporal profiles and as a comparative matrix in which key physiological indicators of individual whales can be used to understand the impacts of anthropogenic activity on threatened whale populations.
    Description: The Woods Hole Oceanographic Institution's Ocean Life Institute and Marine Mammal Center funded this study and NL was supported by a Postdoctoral Fellowship from Baylor University.
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    Mating, births, and transitions : a flexible two-sex matrix model for evolutionary demography (2018)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Population Ecology 60 (2018): 21-36, doi:10.1007/s10144-018-0615-8.
    Description: Models of sexually-reproducing populations that consider only a single sex cannot capture the effects of sex-specific demographic differences and mate availability. We present a new framework for two-sex demographic models that implements and extends the birth-matrix mating-rule approach of Pollak. The model is a continuous-time matrix model that explicitly includes the processes of mating (which is nonlinear but homogeneous), offspring production, and demographic transitions and survival. The resulting nonlinear model converges to exponential growth with an equilibrium population composition. The model can incorporate age- or stage-structured life histories and flexible mating functions. As an example, we apply the model to analyze the effects of mating strategies (polygamy or monogamy, and mated unions composed of males and females, of variable duration) on the response to sex-biased harvesting. The combination of demographic complexity with the interaction of the sexes can have major population dynamic effects and can change the outcome of evolution on sex-related characters.
    Description: This work was supported by a National Science Foundation Graduate Research Fellowship to ES, under Grant 1122374. HC acknowledges support from NSF Grants DEB1145017 and DEB1257545 and support from the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007-2013), ERC Advanced Grant 322989. ES acknowledges support from the Academic Programs office of the Woods Hole Oceanographic Institution.
    Keywords: Birth matrix-mating rule ; BMMR ; Demography ; Matrix population models ; Sex-biased harvest ; Two-sex models
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    High-resolution and high-precision correlation of dark and light layers in the Quaternary hemipelagic sediments of the Japan Sea recovered during IODP Expedition 346 (2018)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Progress in Earth and Planetary Science 5 (2018): 19, doi:10.1186/s40645-018-0167-8.
    Description: The Quaternary hemipelagic sediments of the Japan Sea are characterized by centimeter- to decimeter-scale alternation of dark and light clay to silty clay, which are bio-siliceous and/or bio-calcareous to a various degree. Each of the dark and light layers are considered as deposited synchronously throughout the deeper (〉 500 m) part of the sea. However, attempts for correlation and age estimation of individual layers are limited to the upper few tens of meters. In addition, the exact timing of the depositional onset of these dark and light layers and its synchronicity throughout the deeper part of the sea have not been explored previously, although the onset timing was roughly estimated as ~ 1.5 Ma based on the result of Ocean Drilling Program legs 127/128. Consequently, it is not certain exactly when their deposition started, whether deposition of dark and light layers was synchronous and whether they are correlatable also in the earlier part of their depositional history. The Quaternary hemipelagic sediments of the Japan Sea were drilled at seven sites during Integrated Ocean Drilling Program Expedition 346 in 2013. Alternation of dark and light layers was recovered at six sites whose water depths are 〉 ~ 900 m, and continuous composite columns were constructed at each site. Here, we report our effort to correlate individual dark layers and estimate their ages based on a newly constructed age model at Site U1424 using the best available paleomagnetic datum and marker tephras. The age model is further tuned to LR04 δ18O curve using gamma ray attenuation density (GRA) since it reflects diatom contents that are higher during interglacial high-stands. The constructed age model for Site U1424 is projected to other sites using correlation of dark layers to form a high-resolution and high-precision paleo-observatory network that allows to reconstruct changes in material fluxes with high spatio-temporal resolutions.
    Description: This work was supported by a grant from IODP Exp. 346 After Cruise Research Program, JAMSTEC, awarded to TR, IK, Irino T, Itaki T, ST, KY, SS, and KA and from JSPS KAKENHI grant number 16H01765 awarded to TR.
    Keywords: Quaternary sediments ; Japan Sea ; Inter-site correlation ; High-resolution age model ; IODP ; Expedition 346 ; U1424 ; U1425 ; U1426 ; U1430
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    Addendum: Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.) (2018)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 772, doi:10.3389/fmicb.2018.00772.
    Keywords: Epsilonproteobacteria ; Taxonomy ; Classification ; Genome ; Phylogenomics ; Epsilonbacteraeota ; Epsilonbacterota ; Evolution
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    Integrating archival tag data and a high-resolution oceanographic model to estimate basking shark (Cetorhinus maximus) movements in the western Atlantic (2018)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 25, doi:10.3389/fmars.2018.00025.
    Description: Basking shark (Cetorhinus maximus) populations are considered “vulnerable” globally and “endangered” in the northeast Atlantic by the International Union for the Conservation of Nature (IUCN). Much of our knowledge of this species comes from surface observations in coastal waters, yet recent evidence suggests the majority of their lives may be spent in the deep ocean. Depth preferences of basking sharks have significantly limited movement studies that used pop-up satellite archival transmitting (PSAT) tags as conventional light-based geolocation is impossible for tagged animals that spend significant time below the photic zone. We tagged 57 basking sharks with PSAT tags in the NW Atlantic from 2004 to 2011. Many individuals spent several months at meso- and bathy-pelagic depths where accurate light-level geolocation was impossible during fall, winter and spring. We applied a newly-developed geolocation approach for the PSAT data by comparing three-dimensional depth-temperature profile data recorded by the tags to modeled in situ oceanographic data from the high-resolution HYbrid Coordinate Ocean Model (HYCOM). Observation-based likelihoods were leveraged within a state-space hidden Markov model (HMM). The combined tracks revealed that basking sharks moved from waters around Cape Cod, MA to as far as the SE coast of Brazil (20°S), a total distance of over 17,000 km. Moreover, 59% of tagged individuals with sufficient deployment durations (〉250 days) demonstrated seasonal fidelity to Cape Cod and the Gulf of Maine, with one individual returning to within 60 km of its tagging location 1 year later. Tagged sharks spent most of their time at epipelagic depths during summer months around Cape Cod and in the Gulf of Maine. During winter months, sharks spent extended periods at depths of at least 600 m while moving south to the Sargasso Sea, the Caribbean Sea, or the western tropical Atlantic. Our work demonstrates the utility of applying advances in oceanographic modeling to understanding habitat use of highly migratory, often meso- and bathy-pelagic, ocean megafauna. The large-scale movement patterns of tagged sharks highlight the need for international cooperation when designing and implementing conservation strategies to ensure that the species recovers from the historical effects of over-fishing throughout the North Atlantic Ocean.
    Description: We gratefully acknowledge funding from the US National Science Foundation (OCE 0825148), the National Aeronautics and Space Administration (NNS06AA96G), the Massachusetts Environmental Trust, and the Federal Aid in Sport Fish Restoration Program. CB was funded by the Martin Family Society of Fellows for Sustainability Fellowship at the Massachusetts Institute of Technology, the Grassle Fellowship and Ocean Venture Fund at the Woods Hole Oceanographic Institution, and the NASA Earth and Space Science Fellowship. Funding for the development of HYCOM has been provided by the National Ocean Partnership Program and the Office of Naval Research.
    Keywords: Movement ecology ; Satellite archival telemetry ; Migration ; Mesopelagic ; Oceanographic modeling ; Site fidelity
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    Identification and removal of contaminant sequences from ribosomal gene databases : lessons from the Census of Deep Life (2018)
    Frontiers Media
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 840, doi:10.3389/fmicb.2018.00840.
    Description: Earth’s subsurface environment is one of the largest, yet least studied, biomes on Earth, and many questions remain regarding what microorganisms are indigenous to the subsurface. Through the activity of the Census of Deep Life (CoDL) and the Deep Carbon Observatory, an open access 16S ribosomal RNA gene sequence database from diverse subsurface environments has been compiled. However, due to low quantities of biomass in the deep subsurface, the potential for incorporation of contaminants from reagents used during sample collection, processing, and/or sequencing is high. Thus, to understand the ecology of subsurface microorganisms (i.e., the distribution, richness, or survival), it is necessary to minimize, identify, and remove contaminant sequences that will skew the relative abundances of all taxa in the sample. In this meta-analysis, we identify putative contaminants associated with the CoDL dataset, recommend best practices for removing contaminants from samples, and propose a series of best practices for subsurface microbiology sampling. The most abundant putative contaminant genera observed, independent of evenness across samples, were Propionibacterium, Aquabacterium, Ralstonia, and Acinetobacter. While the top five most frequently observed genera were Pseudomonas, Propionibacterium, Acinetobacter, Ralstonia, and Sphingomonas. The majority of the most frequently observed genera (high evenness) were associated with reagent or potential human contamination. Additionally, in DNA extraction blanks, we observed potential archaeal contaminants, including methanogens, which have not been discussed in previous contamination studies. Such contaminants would directly affect the interpretation of subsurface molecular studies, as methanogenesis is an important subsurface biogeochemical process. Utilizing previously identified contaminant genera, we found that ∼27% of the total dataset were identified as contaminant sequences that likely originate from DNA extraction and DNA cleanup methods. Thus, controls must be taken at every step of the collection and processing procedure when working with low biomass environments such as, but not limited to, portions of Earth’s deep subsurface. Taken together, we stress that the CoDL dataset is an incredible resource for the broader research community interested in subsurface life, and steps to remove contamination derived sequences must be taken prior to using this dataset.
    Description: We wish to acknowledge the support of the Sloan Foundation and the Deep Carbon Observatory and the Department of Energy, Office of Fossil Energy (Colwell).
    Keywords: 16S rRNA ; Contamination ; Microbial survey ; Census of Deep Life ; Deep subsurface
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    The eruption of submarine rhyolite lavas and domes in the deep ocean – Havre 2012, Kermadec Arc (2018)
    Frontiers Media
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Earth Science 6 (2018): 147, doi:10.3389/feart.2018.00147.
    Description: Silicic effusive eruptions in deep submarine environments have not yet been directly observed and very few modern submarine silicic lavas and domes have been described. The eruption of Havre caldera volcano in the Kermadec arc in 2012 provided an outstanding database for research on deep submarine silicic effusive eruptions because it produced 15 rhyolite (70–72 wt.% SiO2) lavas and domes with a total volume of ∼0.21 km3 from 14 separate seafloor vents. Moreover, in 2015, the seafloor products were observed, mapped and sampled in exceptional detail (1-m resolution) using AUV Sentry and ROV Jason2 deployed from R/V Roger Revelle. Vent positions are strongly aligned, defining NW-SE and E-W trends along the southwestern and southern Havre caldera margin, respectively. The alignment of the vents suggests magma ascent along dykes which probably occupy faults related to the caldera margin. Four vents part way up the steeply sloping southwestern caldera wall at 1,200–1,300 m below sea level (bsl) and one on the caldera rim (1,060 m bsl) produced elongate lavas. On the steep caldera wall, the lavas consist of narrow tongues that have triangular cross-section shapes. Two of the narrow-tongue segments are connected to wide lobes on the flat caldera floor at ∼1,500 m bsl. The lavas are characterized by arcuate surface ridges oriented perpendicular to the propagation direction. Eight domes were erupted onto relatively flat sea floor from vents at ∼1,000 m bsl along the southern and southwestern caldera rim. They are characterized by steep margins and gently convex-up upper surfaces. With one exception, the domes have narrow spines and deep clefts above the inferred vent positions. One dome has a relatively smooth upper surface. The lavas and domes all consist of combinations of coherent rhyolite and monomictic rhyolite breccia. Despite eruption from deep-water vents (most 〉900 m bsl), the Havre 2012 rhyolite lavas and domes are very similar to subaerial rhyolite lavas and domes in terms of dimensions, volumes, aspect ratio, textures and morphology. They show that lava morphology was strongly controlled by the pre-existing seafloor topography: domes and wide lobes formed where the rhyolite was emplaced onto flat sea floor, whereas narrow tongues formed where the rhyolite was emplaced on the steep slopes of the caldera wall.
    Description: This research was funded by an Australian Research Council Postdoctoral fellowship to RJC (DP110102196 and DE150101190), and National Science Foundation grants OCE1357443 and OCE1357216. FI was supported by a Tasmanian Government Postgraduate Award.
    Keywords: Lava ; Dome ; Submarine effusive eruption ; Rhyolite ; Havre
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    Long-term forest soil warming alters microbial communities in temperate forest soils (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 104, doi:10.3389/fmicb.2015.00104.
    Description: Soil microbes are major drivers of soil carbon cycling, yet we lack an understanding of how climate warming will affect microbial communities. Three ongoing field studies at the Harvard Forest Long-term Ecological Research (LTER) site (Petersham, MA) have warmed soils 5°C above ambient temperatures for 5, 8, and 20 years. We used this chronosequence to test the hypothesis that soil microbial communities have changed in response to chronic warming. Bacterial community composition was studied using Illumina sequencing of the 16S ribosomal RNA gene, and bacterial and fungal abundance were assessed using quantitative PCR. Only the 20-year warmed site exhibited significant change in bacterial community structure in the organic soil horizon, with no significant changes in the mineral soil. The dominant taxa, abundant at 0.1% or greater, represented 0.3% of the richness but nearly 50% of the observations (sequences). Individual members of the Actinobacteria, Alphaproteobacteria and Acidobacteria showed strong warming responses, with one Actinomycete decreasing from 4.5 to 1% relative abundance with warming. Ribosomal RNA copy number can obfuscate community profiles, but is also correlated with maximum growth rate or trophic strategy among bacteria. Ribosomal RNA copy number correction did not affect community profiles, but rRNA copy number was significantly decreased in warming plots compared to controls. Increased bacterial evenness, shifting beta diversity, decreased fungal abundance and increased abundance of bacteria with low rRNA operon copy number, including Alphaproteobacteria and Acidobacteria, together suggest that more or alternative niche space is being created over the course of long-term warming.
    Description: This work was supported by funding from the University of Massachusetts Amherst to DeAngelis and the National Science Foundation Long-term Ecological Research (LTER) Program.
    Keywords: Climate change ; Microbial ecology ; Ribosomal RNA ; rrn operon copy number ; Trophic strategy
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    Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 90, doi:10.3389/fmicb.2015.00090.
    Description: Tropical smallholder agriculture is undergoing rapid transformation in nutrient cycling pathways as international development efforts strongly promote greater use of mineral fertilizers to increase crop yields. These changes in nutrient availability may alter the composition of microbial communities with consequences for rates of biogeochemical processes that control nutrient losses to the environment. Ecological theory suggests that altered microbial diversity will strongly influence processes performed by relatively few microbial taxa, such as denitrification and hence nitrogen losses as nitrous oxide, a powerful greenhouse gas. Whether this theory helps predict nutrient losses from agriculture depends on the relative effects of microbial community change and increased nutrient availability on ecosystem processes. We find that mineral and organic nutrient addition to smallholder farms in Kenya alters the taxonomic and functional diversity of soil microbes. However, we find that the direct effects of farm management on both denitrification and carbon mineralization are greater than indirect effects through changes in the taxonomic and functional diversity of microbial communities. Changes in functional diversity are strongly coupled to changes in specific functional genes involved in denitrification, suggesting that it is the expression, rather than abundance, of key functional genes that can serve as an indicator of ecosystem process rates. Our results thus suggest that widely used broad summary statistics of microbial diversity based on DNA may be inappropriate for linking microbial communities to ecosystem processes in certain applied settings. Our results also raise doubts about the relative control of microbial composition compared to direct effects of management on nutrient losses in applied settings such as tropical agriculture.
    Description: SAW, MA, CN, and CAP were supported by NSF PIRE grant OISE-0968211. GeoChip analysis was supported by the Office of the Vice President for Research at the University of Oklahoma and NSF MacroSystems Biology program EF-1065844 to JZ.
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    Presynaptic nanodomains : a tale of two synapses (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Cellular Neuroscience 8 (2015): 455, doi:10.3389/fncel.2014.00455.
    Description: Here we summarize the evidence from two “giant” presynaptic terminals—the squid giant synapse and the mammalian calyx of Held—supporting the involvement of nanodomain calcium signals in triggering of neurotransmitter release. At the squid synapse, there are three main lines of experimental evidence for nanodomain signaling. First, changing the size of the unitary calcium channel current by altering external calcium concentration causes a non-linear change in transmitter release, while changing the number of open channels by broadening the presynaptic action potential causes a linear change in release. Second, low-affinity calcium indicators, calcium chelators, and uncaging of calcium all suggest that presynaptic calcium concentrations are as high as hundreds of micromolar, which is more compatible with a nanodomain type of calcium signal. Finally, neurotransmitter release is much less affected by the slow calcium chelator, ethylene glycol tetraacetic acid (EGTA), in comparison to the rapid chelator 1,2-bis(o-aminophenoxy)ethane-N,N,N’,N’-tetraacetic acid (BAPTA). Similarly, as the calyx of Held synapse matures, EGTA becomes less effective in attenuating transmitter release while the number of calcium channels required to trigger a single fusion event declines. This suggests a developmental transformation of microdomain to nanodomain coupling between calcium channels and transmitter release. Calcium imaging and uncaging experiments, in combination with simulations of calcium diffusion, indicate the peak calcium concentration seen by presynaptic calcium sensors reaches at least tens of micromolar at the calyx of Held. Taken together, data from these provide a compelling argument that nanodomain calcium signaling gates very rapid transmitter release.
    Description: This work was supported by a CRP grant from the National Research Foundation of Singapore and by the World Class Institute (WCI) Program of the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology of Korea (MEST) (NRF Grant Number: WCI 2009-003) (to George J. Augustine), and by Operating Grants from the Canadian Institutes of Health Research (MOP-77610, MOP-81159, MOP-14692, VIH-105441) and Canada Research Chair (to Lu-Yang Wang).
    Keywords: Neurotransmitter release ; Calcium signaling ; Calcium channels ; Presynaptic terminals ; Synaptic vesicle trafficking
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    Heaving modes in the world oceans (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Climate Dynamics 45 (2015): 3563-3591, doi:10.1007/s00382-015-2557-6.
    Description: Part of climate changes on decadal time scales can be interpreted as the result of adiabatic motions associated with the adjustment of wind-driven circulation, i.e., the heaving of the isopycnal surfaces. Heat content changes in the ocean, including hiatus of global surface temperature and other phenomena, can be interpreted in terms of heaving associated with adjustment of wind-driven circulation induced by decadal variability of wind. A simple reduced gravity model is used to examine the consequence of adiabatic adjustment of the wind-driven circulation. Decadal changes in wind stress forcing can induce three-dimensional redistribution of warm water in the upper ocean. In particular, wind stress change can generate baroclinic modes of heat content anomaly in the vertical direction; in fact, changes in stratification observed in the ocean may be induced by wind stress change at local or in the remote parts of the world oceans. Intensification of the equatorial easterly can induce cooling in the upper layer and warming in the subsurface layer. The combination of this kind of heat content anomaly with the general trend of warming of the whole water column under the increasing greenhouse effect may offer an explanation for the hiatus of global surface temperature and the accelerating subsurface warming over the past 10–15 years. Furthermore, the meridional transport of warm water in the upper ocean can lead to sizeable transient meridional overturning circulation, poleward heat flux and vertical heat flux. Thus, heaving plays a key role in the oceanic circulation and climate.
    Keywords: Adiabatic motions ; Heaving ; Subtropical and subpolar gyres ; Southern oceans ; Baroclinic modes of heating content anomaly ; Wind-driven circulation ; Climate variability of heat content
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    Combined culture-based and culture-independent approaches provide insights into diversity of jakobids, an extremely plesiomorphic eukaryotic lineage (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 1288, doi:10.3389/fmicb.2015.01288.
    Description: We used culture-based and culture-independent approaches to discover diversity and ecology of anaerobic jakobids (Excavata: Jakobida), an overlooked, deep-branching lineage of free-living nanoflagellates related to Euglenozoa. Jakobids are among a few lineages of nanoflagellates frequently detected in anoxic habitats by PCR-based studies, however only two strains of a single jakobid species have been isolated from those habitats. We recovered 712 environmental sequences and cultured 21 new isolates of anaerobic jakobids that collectively represent at least ten different species in total, from which four are uncultured. Two cultured species have never been detected by environmental, PCR-based methods. Surprisingly, culture-based and culture-independent approaches were able to reveal a relatively high proportion of overall species diversity of anaerobic jakobids—60 or 80%, respectively. Our phylogenetic analyses based on SSU rDNA and six protein-coding genes showed that anaerobic jakobids constitute a clade of morphologically similar, but genetically and ecologically diverse protists—Stygiellidae fam. nov. Our investigation combines culture-based and environmental molecular-based approaches to capture a wider extent of species diversity and shows Stygiellidae as a group that ordinarily inhabits anoxic, sulfide- and ammonium-rich marine habitats worldwide.
    Description: This work was supported by grants from the Czech Science Foundation (project GA14-14105S), the Grant Agency of Charles University (project 301711), Charles University Specific Research SVV 260208/2015. VE and MP acknowledge support from NSF OCE-0849578 and OCE-0326175 for DHAB and Cariaco data. Unpublished data from Saanich Inlet were generously provided by Steven Hallam whose long-term research at this site is made possible through funding from the Tula Foundation-funded Centre for Microbial Diversity and Evolution, the Natural Sciences and Engineering Research Council of Canada, the Canada Foundation for Innovation, and the Canadian Institute for Advanced Research for Saanich Inlet data.
    Keywords: Cryptic species ; Environmental clones ; Marine communities ; Species diversity ; Anaerobic protists
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    Exploring the ecology of deep-sea hydrothermal vents in a metacommunity framework (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 49, doi:10.3389/fmars.2018.00049.
    Description: Species inhabiting deep-sea hydrothermal vents are strongly influenced by the geological setting, as it provides the chemical-rich fluids supporting the food web, creates the patchwork of seafloor habitat, and generates catastrophic disturbances that can eradicate entire communities. The patches of vent habitat host a network of communities (a metacommunity) connected by dispersal of planktonic larvae. The dynamics of the metacommunity are influenced not only by birth rates, death rates and interactions of populations at the local site, but also by regional influences on dispersal from different sites. The connections to other communities provide a mechanism for dynamics at a local site to affect features of the regional biota. In this paper, we explore the challenges and potential benefits of applying metacommunity theory to vent communities, with a particular focus on effects of disturbance. We synthesize field observations to inform models and identify data gaps that need to be addressed to answer key questions including: (1) what is the influence of the magnitude and rate of disturbance on ecological attributes, such as time to extinction or resilience in a metacommunity; (2) what interactions between local and regional processes control species diversity, and (3) which communities are “hot spots” of key ecological significance. We conclude by assessing our ability to evaluate resilience of vent metacommunities to human disturbance (e.g., deep-sea mining). Although the resilience of a few highly disturbed vent systems in the eastern Pacific has been quantified, these values cannot be generalized to remote locales in the western Pacific or mid Atlantic where disturbance rates are different and information on local controls is missing.
    Description: LM was supported by NSF OCE 1356738 and DEB 1558904. SB was supported by the NSF DEB 1558904 and the Investment in Science Fund at Woods Hole Oceanographic Institution. MB was supported by the Austrian Science Fund grants P20190-B17 and P16774-B03. LL was supported by NSF OCE 1634172 and the JM Kaplan Fund. MN was supported by NSF DEB 1558904. Y-JW was supported by a Korean Institute of Ocean Science and Technology (KIOST) grant PM60210.
    Keywords: Metacommunity ; Metapopulation ; Hydrothermal vent ; Connectivity ; Resilience ; Disturbance ; Species diversity ; Dispersal
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    Coincident mass occurrence of gelatinous zooplankton in northern Norway (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 158, doi:10.3389/fmars.2018.00158.
    Description: In autumn 2015, several sources reported observations of large amounts of gelatinous material in a large north Norwegian fjord system, either caught when trawling for other organisms or fouling fishing gear. The responsible organism was identified as a physonect siphonophore, Nanomia cara, while a ctenophore, Beroe cucumis, and a hydromedusa, Modeeria rotunda, were also registered in high abundances on a couple of occasions. To document the phenomena, we have compiled a variety of data from concurrent fisheries surveys and local fishermen, including physical samples, trawl catch, and acoustic data, photo and video evidence, and environmental data. Because of the gas-filled pneumatophore, characteristic for these types of siphonophores, acoustics provided detailed and unique insight to the horizontal and vertical distribution and potential abundances (~0.2–20 colonies·m−3) of N. cara with the highest concentrations observed in the near bottom region at ~320 m depth in the study area. This suggests that these animals were retained and accumulated in the deep basins of the fjord system possibly blooming here because of favorable environmental conditions and potentially higher prey availability compared to the shallower shelf areas to the north. Few cues as to the origin and onset of the bloom were found, but it may have originated from locally resident siphonophores. The characteristics of the deep-water masses in the fjord basins were different compared to the deep water outside the fjord system, suggesting no recent deep-water import to the fjords. However, water-masses containing siphonophores (not necessarily very abundant), may have been additionally introduced to the fjords at intermediate depths, with the animals subsequently trapped in the deeper fjord basins. The simultaneous observations of abundant siphonophores, hydromedusae, and ctenophores in the Lyngen-Kvænangen fjord system are intriguing, but difficult to provide a unified explanation for, as the organisms differ in their biology and ecology. Nanomia and Beroe spp. are holopelagic, while M. rotunda has a benthic hydroid stage. The species also have different trophic ecologies and dietary preferences. Only by combining information from acoustics, trawling, genetics, and local fishermen, were the identity, abundance, and the vertical and horizontal distribution of the physonect siphonophore, N. cara, established.
    Description: The work was funded by the Ministry of Fisheries and Coastal Affairs through the Institute of Marine Research (IMR), while the Research Council of Norway (RCN) is thanked for the financial support through the project The Arctic Ocean Ecosystem—(SI_ARCTIC, RCN 228896). AH was supported by the Norwegian Taxonony Initiative (NTI 70184233) and ForBio Research School funding (RCN 248799 and NTI 70184215).
    Keywords: Jellyfish bloom ; Genetics ; Acoustics ; Nanomia ; North Norwegian fjords ; Gelatinous zooplankton
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    Microbial community structure and associations during a marine dinoflagellate bloom (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 1201, doi:10.3389/fmicb.2018.01201.
    Description: Interactions between microorganisms and algae during bloom events significantly impacts their physiology, alters ambient chemistry, and shapes ecosystem diversity. The potential role these interactions have in bloom development and decline are also of particular interest given the ecosystem impacts of algal blooms. We hypothesized that microbial community structure and succession is linked to specific bloom stages, and reflects complex interactions among taxa comprising the phycosphere environment. This investigation used pyrosequencing and correlation approaches to assess patterns and associations among bacteria, archaea, and microeukaryotes during a spring bloom of the dinoflagellate Alexandrium catenella. Within the bacterial community, Gammaproteobacteria and Bacteroidetes were predominant during the initial bloom stage, while Alphaproteobacteria, Cyanobacteria, and Actinobacteria were the most abundant taxa present during bloom onset and termination. In the archaea biosphere, methanogenic members were present during the early bloom period while the majority of species identified in the late bloom stage were ammonia-oxidizing archaea and Halobacteriales. Dinoflagellates were the major eukaryotic group present during most stages of the bloom, whereas a mixed assemblage comprising diatoms, green-algae, rotifera, and other microzooplankton were present during bloom termination. Temperature and salinity were key environmental factors associated with changes in bacterial and archaeal community structure, respectively, whereas inorganic nitrogen and inorganic phosphate were associated with eukaryotic variation. The relative contribution of environmental parameters measured during the bloom to variability among samples was 35.3%. Interaction analysis showed that Maxillopoda, Spirotrichea, Dinoflagellata, and Halobacteria were keystone taxa within the positive-correlation network, while Halobacteria, Dictyochophyceae, Mamiellophyceae, and Gammaproteobacteria were the main contributors to the negative-correlation network. The positive and negative relationships were the primary drivers of mutualist and competitive interactions that impacted algal bloom fate, respectively. Functional predictions showed that blooms enhance microbial carbohydrate and energy metabolism, and alter the sulfur cycle. Our results suggest that microbial community structure is strongly linked to bloom progression, although specific drivers of community interactions and responses are not well understood. The importance of considering biotic interactions (e.g., competition, symbiosis, and predation) when investigating the link between microbial ecological behavior and an algal bloom’s trajectory is also highlighted.
    Description: This work was supported by NSFC (41476092, 41741015), S&T Projects of Shenzhen Science and Technology Innovation Committee (JCYJ20150831192329178, JCYJ20170817160708491, and JCYJ20170412171959157), Key Research and Development Plan of Ministry of Science and Technology of China (2017YFC1403600), as well as by the Woods Hole Center for Oceans and Human Health through the National Science Foundation (Grant OCE-1314642), and National Institute of Environmental Health Sciences (Grant 1-P01-ES021923-01).
    Keywords: Microbial community ; Algal bloom ; Dynamic process ; Network interaction ; Ecological function
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    Modeling tissue and blood gas kinetics in coastal and offshore common bottlenose dolphins, Tursiops truncatus (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Physiology 9 (2018): 838, doi: 10.3389/fphys.2018.00838.
    Description: Bottlenose dolphins (Tursiops truncatus) are highly versatile breath-holding predators that have adapted to a wide range of foraging niches from rivers and coastal ecosystems to deep-water oceanic habitats. Considerable research has been done to understand how bottlenose dolphins manage O2 during diving, but little information exists on other gases or how pressure affects gas exchange. Here we used a dynamic multi-compartment gas exchange model to estimate blood and tissue O2, CO2, and N2 from high-resolution dive records of two different common bottlenose dolphin ecotypes inhabiting shallow (Sarasota Bay) and deep (Bermuda) habitats. The objective was to compare potential physiological strategies used by the two populations to manage shallow and deep diving life styles. We informed the model using species-specific parameters for blood hematocrit, resting metabolic rate, and lung compliance. The model suggested that the known O2 stores were sufficient for Sarasota Bay dolphins to remain within the calculated aerobic dive limit (cADL), but insufficient for Bermuda dolphins that regularly exceeded their cADL. By adjusting the model to reflect the body composition of deep diving Bermuda dolphins, with elevated muscle mass, muscle myoglobin concentration and blood volume, the cADL increased beyond the longest dive duration, thus reflecting the necessary physiological and morphological changes to maintain their deep-diving life-style. The results indicate that cardiac output had to remain elevated during surface intervals for both ecotypes, and suggests that cardiac output has to remain elevated during shallow dives in-between deep dives to allow sufficient restoration of O2 stores for Bermuda dolphins. Our integrated modeling approach contradicts predictions from simple models, emphasizing the complex nature of physiological interactions between circulation, lung compression, and gas exchange.
    Description: AF (N00014-17-1-2756), PT (N000141512553) and FHJ (N00014-14-1-0410) were supported by the Office of Naval Research, and FHJ by an AIASCOFUND fellowship from Aarhus Institute of Advanced Studies, Aarhus University, under EU's FP7 program (Agreement No. 609033). PT received funding from the MASTS pooling initiative (The Marine Alliance for Science and Technology for Scotland) and their support is gratefully acknowledged.
    Keywords: Diving physiology ; Modeling and simulations ; Gas exchange ; Marine mammals ; Decompression sickness ; Blood gases ; Hypoxia
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    Microbial- and thiosulfate-mediated dissolution of mercury sulfide minerals and transformation to gaseous mercury (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 596, doi:10.3389/fmicb.2015.00596.
    Description: Mercury (Hg) is a toxic heavy metal that poses significant environmental and human health risks. Soils and sediments, where Hg can exist as the Hg sulfide mineral metacinnabar (β-HgS), represent major Hg reservoirs in aquatic environments. Metacinnabar has historically been considered a sink for Hg in all but severely acidic environments, and thus disregarded as a potential source of Hg back to aqueous or gaseous pools. Here, we conducted a combination of field and laboratory incubations to identify the potential for metacinnabar as a source of dissolved Hg within near neutral pH environments and the underpinning (a)biotic mechanisms at play. We show that the abundant and widespread sulfur-oxidizing bacteria of the genus Thiobacillus extensively colonized metacinnabar chips incubated within aerobic, near neutral pH creek sediments. Laboratory incubations of axenic Thiobacillus thioparus cultures led to the release of metacinnabar-hosted Hg(II) and subsequent volatilization to Hg(0). This dissolution and volatilization was greatly enhanced in the presence of thiosulfate, which served a dual role by enhancing HgS dissolution through Hg complexation and providing an additional metabolic substrate for Thiobacillus. These findings reveal a new coupled abiotic-biotic pathway for the transformation of metacinnabar-bound Hg(II) to Hg(0), while expanding the sulfide substrates available for neutrophilic chemosynthetic bacteria to Hg-laden sulfides. They also point to mineral-hosted Hg as an underappreciated source of gaseous elemental Hg to the environment.
    Description: This work was supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-0644491 awarded to AV.
    Keywords: Mercury ; Metacinnabar ; Sulfur chemosynthesis ; Thiobacillus ; Thiosulfate ; Mercury sulfide dissolution ; Sulfur metabolism ; Sulfur oxidation
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    Quantifying the residence time and flushing characteristics of a shallow, back-barrier estuary : application of hydrodynamic and particle tracking models (2015)
    Springer
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    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Estuaries and Coasts 38 (2015): 1719-1734, doi:10.1007/s12237-014-9885-3.
    Description: Estuarine residence time is a major driver of eutrophication and water quality. Barnegat Bay-Little Egg Harbor (BB-LEH), New Jersey, is a lagoonal back-barrier estuary that is subject to anthropogenic pressures including nutrient loading, eutrophication, and subsequent declines in water quality. A combination of hydrodynamic and particle tracking modeling was used to identify the mechanisms controlling flushing, residence time, and spatial variability of particle retention. The models demonstrated a pronounced northward subtidal flow from Little Egg Inlet in the south to Pt. Pleasant Canal in the north due to frictional effects in the inlets, leading to better flushing of the southern half of the estuary and particle retention in the northern estuary. Mean residence time for BB-LEH was 13 days but spatial variability was between ∼0 and 30 days depending on the initial particle location. Mean residence time with tidal forcing alone was 24 days (spatial variability between ∼0 and 50 days); the tides were relatively inefficient in flushing the northern end of the Bay. Scenarios with successive exclusion of physical processes from the models revealed that meteorological and remote offshore forcing were stronger drivers of exchange than riverine inflow. Investigations of water quality and eutrophication should take into account spatial variability in hydrodynamics and residence time in order to better quantify the roles of nutrient loading, production, and flushing.
    Description: Funding was provided by the New Jersey Department of Environmental Protection and the Coastal and Marine Geology Program of the U.S. Geological Survey.
    Keywords: Hydrodynamic modeling ; Residence time ; Particle tracking ; Back-barrier estuaries ; Eutrophication
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    Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 901, doi:10.3389/fmicb.2015.00901.
    Description: Many deep-sea hydrothermal vent systems are regularly impacted by volcanic eruptions, leaving fresh basalt where abundant animal and microbial communities once thrived. After an eruption, microbial biofilms are often the first visible evidence of biotic re-colonization. The present study is the first to investigate microbial colonization of newly exposed basalt surfaces in the context of vent fluid chemistry over an extended period of time (4–293 days) by deploying basalt blocks within an established diffuse-flow vent at the 9°50′ N vent field on the East Pacific Rise. Additionally, samples obtained after a recent eruption at the same vent field allowed for comparison between experimental results and those from natural microbial re-colonization. Over 9 months, the community changed from being composed almost exclusively of Epsilonproteobacteria to a more diverse assemblage, corresponding with a potential expansion of metabolic capabilities. The process of biofilm formation appears to generate similar surface-associated communities within and across sites by selecting for a subset of fluid-associated microbes, via species sorting. Furthermore, the high incidence of shared operational taxonomic units over time and across different vent sites suggests that the microbial communities colonizing new surfaces at diffuse-flow vent sites might follow a predictable successional pattern.
    Description: This work was partly supported by grants from the US National Science Foundation to SS (OCE-0452333, 1136727), to TS (OCE-0117117, 0525907, 0961186, 1043064, 0327261, 1131620), to WS and KD (1434798), as well as a grant by the WHOI Deep Ocean Exploration Institute to SB, TS, and SS.
    Keywords: Hydrothermal vents ; Colonization ; Species sorting ; Settlement ; Volcanic eruption ; 16S rRNA ; Epsilonproteobacteria ; Disturbance
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    Mixotrophic activity and diversity of Antarctic marine protists in austral summer (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 13, doi:10.3389/fmars.2018.00013.
    Description: Identifying putative mixotrophic protist species in the environment is important for understanding their behavior, with the recovery of these species in culture essential for determining the triggers of feeding, grazing rates, and overall impact on bacterial standing stocks. In this project, mixotroph abundances determined using tracer ingestion in water and sea ice samples collected in the Ross Sea, Antarctica during the summer of 2011 were compared with data from the spring (Ross Sea) and fall (Arctic) to examine the impacts of bacterivory/mixotrophy. Mixotrophic nanoplankton (MNAN) were usually less abundant than heterotrophs, but consumed more of the bacterial standing stock per day due to relatively higher ingestion rates (1–7 bacteria mixotroph−1 h−1 vs. 0.1–4 bacteria heterotroph−1 h−1). Yet, even with these high rates observed in the Antarctic summer, mixotrophs appeared to have a smaller contribution to bacterivory than in the Antarctic spring. Additionally, putative mixotroph taxa were identified through incubation experiments accomplished with bromodeoxyuridine-labeled bacteria as food, immunoprecipitation (IP) of labeled DNA, and amplification and high throughput sequencing of the eukaryotic ribosomal V9 region. Putative mixotroph OTUs were identified in the IP samples by taxonomic similarity to known phototroph taxa. OTUs that had increased abundance in IP samples compared to the non-IP samples from both surface and chlorophyll maximum (CM) depths were considered to represent active mixotrophy and include ones taxonomically similar to Dictyocha, Gymnodinium, Pentapharsodinium, and Symbiodinium. These OTUs represent target taxa for isolation and laboratory experiments on triggers for mixotrophy, to be combined with qPCR to estimate their abundance, seasonal distribution and potential impact.
    Description: This work was supported by National Science Foundation Grants OPP-0838955 (RG) and OPP-0838847 (RS).
    Keywords: Protist ; Diversity ; Mixotrophy ; Ross Sea ; Amplicon sequencing
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    Distinct siderophores contribute to iron cycling in the mesopelagic at Station ALOHA (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 61, doi:10.3389/fmars.2018.00061.
    Description: The distribution of dissolved iron (Fe), total organic Fe-binding ligands, and siderophores were measured between the surface and 400 m at Station ALOHA, a long term ecological study site in the North Pacific Subtropical Gyre. Dissolved Fe concentrations were low throughout the water column and strong organic Fe-binding ligands exceeded dissolved Fe at all depths; varying from 0.9 nmol L−1 in the surface to 1.6 nmol L−1 below 150 m. Although Fe does not appear to limit microbial production, we nevertheless found siderophores at nearly all depths, indicating some populations of microbes were responding to Fe stress. Ferrioxamine siderophores were most abundant in the upper water column, with concentrations between 0.1 and 2 pmol L−1, while a suite of amphibactins were found below 200 m with concentrations between 0.8 and 11 pmol L−1. The distinct vertical distribution of ferrioxamines and amphibactins may indicate disparate strategies for acquiring Fe from dust in the upper water column and recycled organic matter in the lower water column. Amphibactins were found to have conditional stability constants (log KcondFeL1,Fe′) ranging from 12.0 to 12.5, while ferrioxamines had much stronger conditional stability constants ranging from 14.0 to 14.4, within the range of observed L1 ligands by voltammetry. We used our data to calculate equilibrium Fe speciation at Station ALOHA to compare the relative concentration of inorganic and siderophore complexed Fe. The results indicate that the concentration of Fe bound to siderophores was up to two orders of magnitude higher than inorganic Fe, suggesting that even if less bioavailable, siderophores were nevertheless a viable pathway for Fe acquisition by microbes at our study site. Finally, we observed rapid production of ferrioxamine E by particle-associated bacteria during incubation of freshly collected sinking organic matter. Fe-limitation may therefore be a factor in regulating carbon metabolism and nutrient regeneration in the mesopelagic.
    Description: This work was funded by the Woods Hole Oceanographic Postdoctoral Fellowship for RaB, the Simons Foundation (Award 329108), and the National Science Foundation (OCE-1356747).
    Keywords: Iron ; Siderophores ; Station ALOHA ; Organic ligands ; Iron limitation
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    The origin and role of organic matrix in coral calcification: insights from comparing coral skeleton and abiogenic aragonite (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 170, doi:10.3389/fmars.2018.00170.
    Description: Understanding the mechanisms of coral calcification is critical for accurately projecting coral reef futures under ocean acidification and warming. Recent suggestions that calcification is primarily controlled by organic molecules and the biological activity of the coral polyp imply that ocean acidification may not affect skeletal accretion. The basis for these suggestions relies heavily on correlating the presence of organic matter with the orientation and disorder of aragonite crystals in the skeleton, carrying the assumption that organic matter observed in the skeleton was produced by the polyp to control calcification. Here we use Raman spectroscopy to test whether there are differences in organic matter content between coral skeleton and abiogenic aragonites precipitated from seawater, both before and after thermal annealing (heating). We measured the background fluxorescence and intensity of C-H bonding signals in the Raman spectra, which are commonly attributed to coral polyp-derived skeletal organic matrix (SOM) and have been used to map its distribution. Surprisingly, we found no differences in either fluorescence or C-H bonding between abiogenic aragonite and coral skeleton. Annealing reduced the molecular disorder in coral skeleton, potentially due to removal of organic matter, but the same effect was also observed in the abiogenic aragonites. The presence of organic molecules in the abiogenic aragonites is further supported by measurements of N content and δ15N. Together, our data suggest that some of what has been interpreted in previous studies as polyp-derived SOM may actually be seawater-sourced organic matter or some other signal not unique to biogenic aragonite. Finally, we create a high-resolution Raman map of a Pocillopora skeleton to demonstrate how patterns of fluorescence and elevated calcifying fluid aragonite saturation state (ΩAr) along centers of calcification are consistent with both biological and physico-chemical controls. Our aim is to advance discussion on biological mediation of calcification and the implications for coral resilience in a high-CO2 world.
    Description: This study was supported by an ARC Laureate Fellowship (FL120100049) awarded to Professor Malcolm McCulloch and the ARC Centre of Excellence for Coral Reef Studies (CE140100020).
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    Electrical synapses enhance and accelerate interneuron recruitment in response to coincident and sequential excitation (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Cellular Neuroscience 12 (2018): 156, doi:10.3389/fncel.2018.00156.
    Description: Electrical synapses are ubiquitous in interneuron networks. They form intercellular pathways, allowing electrical currents to leak between coupled interneurons. I explored the impact of electrical coupling on the integration of excitatory signals and on the coincidence detection abilities of electrically-coupled cerebellar basket cells (BCs). In order to do so, I quantified the influence of electrical coupling on the rate, the probability and the latency at which BCs generate action potentials when stimulated. The long-lasting simultaneous suprathreshold depolarization of a coupled cell evoked an increase in firing rate and a shortening of action potential latency in a reference basket cell, compared to its depolarization alone. Likewise, the action potential probability of coupled cells was strongly increased when they were simultaneously stimulated with trains of short-duration near-threshold current pulses (mimicking the activation of presynaptic granule cells) at 10 Hz, and to a lesser extent at 50 Hz, an effect that was absent in non-coupled cells. Moreover, action potential probability was increased and action potential latency was shortened in response to synaptic stimulations in mice lacking the protein that forms gap junctions between BCs, connexin36, relative to wild-type (WT) controls. These results suggest that electrical synapses between BCs decrease the probability and increase the latency of stimulus-triggered action potentials, both effects being reverted upon simultaneous excitation of coupled cells. Interestingly, varying the delay at which coupled cells are stimulated revealed that the probability and the speed of action potential generation are facilitated maximally when a basket cell is stimulated shortly after a coupled cell. These findings suggest that electrically-coupled interneurons behave as coincidence and sequence detectors that dynamically regulate the latency and the strength of inhibition onto postsynaptic targets depending on the degree of input synchrony in the coupled interneuron network.
    Description: This work was supported by the laboratory of Brain Physiology at Paris Descartes University (UMR8118), the Centre National de la Recherche Scientifique, the Agence Nationale de la Recherche Grant INterneuron NETwork (INNET), the Laboratory of Cellular and Systemic Neurophysiology, Institute for Physiology I at the University of Freiburg, and the Grass foundation.
    Keywords: Gap junction ; Synaptic integration ; Interneurons ; Inhibition ; Coincidence ; Cerebellum
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    Nitrogen limitation of the summer phytoplankton and heterotrophic prokaryote communities in the Chukchi Sea (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 5 (2018): 362, doi:10.3389/fmars.2018.00362.
    Description: Major changes to Arctic marine ecosystems have resulted in longer growing seasons with increased phytoplankton production over larger areas. In the Chukchi Sea, the high productivity fuels intense benthic denitrification creating a nitrogen (N) deficit that is transported through the Arctic to the Atlantic Ocean, where it likely fuels N fixation. Given the rapid pace of environmental change and the potentially globally significant N deficit, we conducted experiments aimed at understanding phytoplankton and microbial N utilization in the Chukchi Sea. Ship-board experiments tested the effect of nitrate (NO3-) additions on both phytoplankton and heterotrophic prokaryote abundance, community composition, photophysiology, carbon fixation and NO3- uptake rates. Results support the critical role of NO3- in limiting summer phytoplankton communities to small cells with low production rates. NO3- additions increased particulate concentrations, abundance of large diatoms, and rates of carbon fixation and NO3- uptake by cells 〉1 μm. Increases in the quantum yield and electron turnover rate of photosystem II in +NO3- treatments suggested that phytoplankton in the ambient dissolved N environment were N starved and unable to build new, or repair damaged, reaction centers. While some increases in heterotrophic prokaryote abundance and production were noted with NO3- amendments, phytoplankton competition or grazers likely dampened these responses. Trends toward a warmer more stratified Chukchi Sea will likely enhance summer oligotrophic conditions and further N starve Chukchi Sea phytoplankton communities.
    Description: Fieldwork and analysis for the ICESCAPE program was supported by Ocean Biology and Biogeochemistry Program of the National Aeronautic and Space Administration under Grant No. NNX10AF42G to KA.
    Keywords: Phytoplankton ; Nitrogen ; Chukchi Sea ; Nitrate ; Nutrient limitation
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    Cool, alkaline serpentinite formation fluid regime with scarce microbial habitability and possible abiotic synthesis beneath the South Chamorro Seamount (2018)
    Springer
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Progress in Earth and Planetary Science 5 (2018): 74, doi:10.1186/s40645-018-0232-3.
    Description: South Chamorro Seamount (SCS) is a blueschist-bearing serpentinite mud volcano in the Mariana forearc. Previous scientific drilling conducted at SCS revealed highly alkaline, sulfate-rich formation fluids resulting from slab-derived fluid upwelling combined with serpentinization both beneath and within the seamount. In the present study, a time-series of ROV dives spanning 1000 days was conducted to collect discharging alkaline fluids from the cased Ocean Drilling Program (ODP) Hole 1200C (hereafter the CORK fluid). The CORK fluids were analyzed for chemical compositions (including dissolved gas) and microbial community composition/function. Compared to the ODP porewater, the CORK fluids were generally identical in concentration of major ions, with the exception of significant sulfate depletion and enrichment in sulfide, alkalinity, and methane. Microbiological analyses of the CORK fluids revealed little biomass and functional activity, despite habitable temperature conditions. The post-drilling sulfate depletion is likely attributable to sulfate reduction coupled with oxidation of methane (and hydrogen), probably triggered by the drilling and casing operations. Multiple lines of evidence suggest that abiotic organic synthesis associated with serpentinization is the most plausible source of the abundant methane in the CORK fluid. The SCS formation fluid regime presented here may represent the first example on Earth where abiotic syntheses are conspicuous with little biotic processes, despite a condition with sufficient bioavailable energy potentials and temperatures within the habitable range.
    Description: This work was partly supported by JSPS KAKENHI Grant Number 25701004 (SK).
    Keywords: Forearc serpentinite mud volcano ; South Chamorro Seamount ; Limit of biosphere ; Present-days’ chemical evolution ; Radio-isotope-tracer carbon assimilation estimation
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    Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2014): 605, doi:10.3389/fmicb.2014.00605.
    Description: Some of the most extreme marine habitats known are the Mediterranean deep hypersaline anoxic basins (DHABs; water depth ∼3500 m). Brines of DHABs are nearly saturated with salt, leading many to suspect they are uninhabitable for eukaryotes. While diverse bacterial and protistan communities are reported from some DHAB water-column haloclines and brines, the existence and activity of benthic DHAB protists have rarely been explored. Here, we report findings regarding protists and fungi recovered from sediments of three DHAB (Discovery, Urania, L’ Atalante) haloclines, and compare these to communities from sediments underlying normoxic waters of typical Mediterranean salinity. Halocline sediments, where the redoxcline impinges the seafloor, were studied from all three DHABs. Microscopic cell counts suggested that halocline sediments supported denser protist populations than those in adjacent control sediments. Pyrosequencing analysis based on ribosomal RNA detected eukaryotic ribotypes in the halocline sediments from each of the three DHABs, most of which were fungi. Sequences affiliated with Ustilaginomycotina Basidiomycota were the most abundant eukaryotic signatures detected. Benthic communities in these DHABs appeared to differ, as expected, due to differing brine chemistries. Microscopy indicated that only a low proportion of protists appeared to bear associated putative symbionts. In a considerable number of cases, when prokaryotes were associated with a protist, DAPI staining did not reveal presence of any nuclei, suggesting that at least some protists were carcasses inhabited by prokaryotic scavengers.
    Description: K. Kormas was partially supported by the University of Thessaly through a sabbatical in 2013. Supported by NSF grants OCE-0849578 to Virginia P. Edgcomb and Joan M. Bernhard and OCE-1061391 to Joan M. Bernhard and Virginia P. Edgcomb.
    Keywords: Eukaryote ; DHABs ; Discovery ; Urania, L’ Atalante ; Diversity ; rRNA
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    Rapid and gradual modes of aerosol trace metal dissolution in seawater (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 5 (2015): 794, doi:10.3389/fmicb.2014.00794.
    Description: Atmospheric deposition is a major source of trace metals in marine surface waters and supplies vital micronutrients to phytoplankton, yet measured aerosol trace metal solubility values are operationally defined, and there are relatively few multi-element studies on aerosol-metal solubility in seawater. Here we measure the solubility of aluminum (Al), cadmium (Cd), cobalt (Co), copper (Cu), iron (Fe), manganese (Mn), nickel (Ni), lead (Pb), and zinc (Zn) from natural aerosol samples in seawater over a 7 days period to (1) evaluate the role of extraction time in trace metal dissolution behavior and (2) explore how the individual dissolution patterns could influence biota. Dissolution behavior occurs over a continuum ranging from rapid dissolution, in which the majority of soluble metal dissolved immediately upon seawater exposure (Cd and Co in our samples), to gradual dissolution, where metals dissolved slowly over time (Zn, Mn, Cu, and Al in our samples). Additionally, dissolution affected by interactions with particles was observed in which a decline in soluble metal concentration over time occurred (Fe and Pb in our samples). Natural variability in aerosol chemistry between samples can cause metals to display different dissolution kinetics in different samples, and this was particularly evident for Ni, for which samples showed a broad range of dissolution rates. The elemental molar ratio of metals in the bulk aerosols was 23,189Fe: 22,651Al: 445Mn: 348Zn: 71Cu: 48Ni: 23Pb: 9Co: 1Cd, whereas the seawater soluble molar ratio after 7 days of leaching was 11Fe: 620Al: 205Mn: 240Zn: 20Cu: 14Ni: 9Pb: 2Co: 1Cd. The different kinetics and ratios of aerosol metal dissolution have implications for phytoplankton nutrition, and highlight the need for unified extraction protocols that simulate aerosol metal dissolution in the surface ocean.
    Description: This work was supported by NSF-OCE grant 0850467 to Adina Paytan, NSF-OCE grant 1233261 to Mak A. Saito, and NATO Science for Peace Grant to Adina Paytan and Anton F. Post (SfP 982161). Katherine R. M. Mackey was supported by a National Science Foundation Postdoctoral Research Fellowship in Biology (Grant No. NSF 1103575) and Chia-Te Chien by an international graduate student fellowship from the ministry of education, Taiwan.
    Keywords: Aerosols ; Atmospheric deposition ; Phytoplankton ; Trace metals ; Ligands
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    The transcriptional response of microbial communities in thawing Alaskan permafrost soils (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 6 (2015): 197, doi:10.3389/fmicb.2015.00197.
    Description: Thawing of permafrost soils is expected to stimulate microbial decomposition and respiration of sequestered carbon. This could, in turn, increase atmospheric concentrations of greenhouse gasses, such as carbon dioxide and methane, and create a positive feedback to climate warming. Recent metagenomic studies suggest that permafrost has a large metabolic potential for carbon processing, including pathways for fermentation and methanogenesis. Here, we performed a pilot study using ultrahigh throughput Illumina HiSeq sequencing of reverse transcribed messenger RNA to obtain a detailed overview of active metabolic pathways and responsible organisms in up to 70 cm deep permafrost soils at a moist acidic tundra location in Arctic Alaska. The transcriptional response of the permafrost microbial community was compared before and after 11 days of thaw. In general, the transcriptional profile under frozen conditions suggests a dominance of stress responses, survival strategies, and maintenance processes, whereas upon thaw a rapid enzymatic response to decomposing soil organic matter (SOM) was observed. Bacteroidetes, Firmicutes, ascomycete fungi, and methanogens were responsible for largest transcriptional response upon thaw. Transcripts indicative of heterotrophic methanogenic pathways utilizing acetate, methanol, and methylamine were found predominantly in the permafrost table after thaw. Furthermore, transcripts involved in acetogenesis were expressed exclusively after thaw suggesting that acetogenic bacteria are a potential source of acetate for acetoclastic methanogenesis in freshly thawed permafrost. Metatranscriptomics is shown here to be a useful approach for inferring the activity of permafrost microbes that has potential to improve our understanding of permafrost SOM bioavailability and biogeochemical mechanisms contributing to greenhouse gas emissions as a result of permafrost thaw.
    Description: This work was fostered by grants from WHOI's Arctic Research Initiative to MJLC and AS, as well as a Center for Dark Energy Biosphere Investigations (CDEBI) grant OCE-0939564 to WDO.
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    Oxidative formation and removal of complexed Mn(III) by Pseudomonas species (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 9 (2018): 560, doi:10.3389/fmicb.2018.00560.
    Description: The observation of significant concentrations of soluble Mn(III) complexes in oxic, suboxic, and some anoxic waters has triggered a re-evaluation of the previous Mn paradigm which focused on the cycling between soluble Mn(II) and insoluble Mn(III,IV) species as operationally defined by filtration. Though Mn(II) oxidation in aquatic environments is primarily bacterially-mediated, little is known about the effect of Mn(III)-binding ligands on Mn(II) oxidation nor on the formation and removal of Mn(III). Pseudomonas putida GB-1 is one of the most extensively investigated of all Mn(II) oxidizing bacteria, encoding genes for three Mn oxidases (McoA, MnxG, and MopA). P. putida GB-1 and associated Mn oxidase mutants were tested alongside environmental isolates Pseudomonas hunanensis GSL-007 and Pseudomonas sp. GSL-010 for their ability to both directly oxidize weakly and strongly bound Mn(III), and to form these complexes through the oxidation of Mn(II). Using Mn(III)-citrate (weak complex) and Mn(III)-DFOB (strong complex), it was observed that P. putida GB-1, P. hunanensis GSL-007 and Pseudomonas sp. GSL-010 and mutants expressing only MnxG and McoA were able to directly oxidize both species at varying levels; however, no oxidation was detected in cultures of a P. putida mutant expressing only MopA. During cultivation in the presence of Mn(II) and citrate or DFOB, P. putida GB-1, P. hunanensis GSL-007 and Pseudomonas sp. GSL-010 formed Mn(III) complexes transiently as an intermediate before forming Mn(III/IV) oxides with the overall rates and extents of Mn(III,IV) oxide formation being greater for Mn(III)-citrate than for Mn(III)-DFOB. These data highlight the role of bacteria in the oxidative portion of the Mn cycle and suggest that the oxidation of strong Mn(III) complexes can occur through enzymatic mechanisms involving multicopper oxidases. The results support the observations from field studies and further emphasize the complexity of the geochemical cycling of manganese.
    Description: This work was funded by grants from the Chemical Oceanography program of the National Science Foundation (OCE-1558738 and OCE-1558692).
    Keywords: Manganese(III) ; Mn(III)-DFOB ; Mn(III)-citrate ; Mn(III)-L ; Pseudomonas ; Bacterial manganese oxidation
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    Resting metabolic rate and lung function in wild offshore common bottlenose dolphins, Tursiops truncatus, near Bermuda (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Physiology 9 (2018): 886, doi:10.3389/fphys.2018.00886.
    Description: Diving mammals have evolved a suite of physiological adaptations to manage respiratory gases during extended breath-hold dives. To test the hypothesis that offshore bottlenose dolphins have evolved physiological adaptations to improve their ability for extended deep dives and as protection for lung barotrauma, we investigated the lung function and respiratory physiology of four wild common bottlenose dolphins (Tursiops truncatus) near the island of Bermuda. We measured blood hematocrit (Hct, %), resting metabolic rate (RMR, l O2 ⋅ min-1), tidal volume (VT, l), respiratory frequency (fR, breaths ⋅ min-1), respiratory flow (l ⋅ min-1), and dynamic lung compliance (CL, l ⋅ cmH2O-1) in air and in water, and compared measurements with published results from coastal, shallow-diving dolphins. We found that offshore dolphins had greater Hct (56 ± 2%) compared to shallow-diving bottlenose dolphins (range: 30–49%), thus resulting in a greater O2 storage capacity and longer aerobic diving duration. Contrary to our hypothesis, the specific CL (sCL, 0.30 ± 0.12 cmH2O-1) was not different between populations. Neither the mass-specific RMR (3.0 ± 1.7 ml O2 ⋅ min-1 ⋅ kg-1) nor VT (23.0 ± 3.7 ml ⋅ kg-1) were different from coastal ecotype bottlenose dolphins, both in the wild and under managed care, suggesting that deep-diving dolphins do not have metabolic or respiratory adaptations that differ from the shallow-diving ecotypes. The lack of respiratory adaptations for deep diving further support the recently developed hypothesis that gas management in cetaceans is not entirely passive but governed by alteration in the ventilation-perfusion matching, which allows for selective gas exchange to protect against diving related problems such as decompression sickness.
    Description: Funding for this project was provided by the Office of Naval Research (ONR YIP Award No. N000141410563, and Dolphin Quest, Inc. FHJ was supported by the Office of Naval Research (Award No. N00014-1410410) and an AIAS-COFUND fellowship from Aarhus Institute of Advanced Studies under the FP7 program of the EU (Agreement No. 609033).
    Keywords: Lung mechanics ; Total lung capacity ; Field metabolic rate ; Energetics ; Minimum air volume ; Diving physiology ; Marine mammals ; Spirometry
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