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  • Springer Nature  (43,622)
  • American Meteorological Society
  • 2015-2019  (40,346)
  • 1965-1969  (6,069)
  • 2015  (40,346)
  • 1967  (6,069)
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  • 2015-2019  (40,346)
  • 1965-1969  (6,069)
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  • 1
    Publication Date: 2020-11-18
    Description: A realistic representation of the North Atlantic tropical cyclone tracks is crucial as it allows, for example, explaining potential changes in U.S. landfalling systems. Here, the authors present a tentative study that examines the ability of recent climate models to represent North Atlantic tropical cyclone tracks. Tracks from two types of climate models are evaluated: explicit tracks are obtained from tropical cyclones simulated in regional or global climate models with moderate to high horizontal resolution (1°–0.25°), and downscaled tracks are obtained using a downscaling technique with large-scale environmental fields from a subset of these models. For both configurations, tracks are objectively separated into four groups using a cluster technique, leading to a zonal and a meridional separation of the tracks. The meridional separation largely captures the separation between deep tropical and subtropical, hybrid or baroclinic cyclones, while the zonal separation segregates Gulf of Mexico and Cape Verde storms. The properties of the tracks’ seasonality, intensity, and power dissipation index in each cluster are documented for both configurations. The authors’ results show that, except for the seasonality, the downscaled tracks better capture the observed characteristics of the clusters. The authors also use three different idealized scenarios to examine the possible future changes of tropical cyclone tracks under 1) warming sea surface temperature, 2) increasing carbon dioxide, and 3) a combination of the two. The response to each scenario is highly variable depending on the simulation considered. Finally, the authors examine the role of each cluster in these future changes and find no preponderant contribution of any single cluster over the others.
    Description: Published
    Description: 1333–1361
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: tropical cyclones ; atlantic basin ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
    Publication Date: 2021-06-22
    Description: This work explores the impact of orbital parameters and greenhouse gas concentrations on the climate of marine isotope stage (MIS) 7 glacial inception and compares it to that of MIS 5. The authors use a coupled atmosphere-ocean general circulation model to simulate the mean climate state of six time slices at 115, 122, 125, 229, 236, and 239 kyr, representative of a climate evolution from interglacial to glacial inception conditions. The simulations are designed to separate the effects of orbital parameters from those of greenhouse gas (GHG). Their results show that, in all the time slices considered, MIS 7 boreal lands mean annual climate is colder than the MIS 5 one. This difference is explained at 70% by the impact of the MIS 7 GHG. While the impact of GHG over Northern Hemisphere is homogeneous, the difference in temperature between MIS 7 and MIS 5 due to orbital parameters differs regionally and is linked with the Arctic Oscillation. The perennial snow cover is larger in all the MIS 7 experiments compared to MIS 5, as a result of MIS 7 orbital parameters, strengthened by GHG. At regional scale, Eurasia exhibits the strongest response to MIS 7 cold climate with a perennial snow area 3 times larger than in MIS 5 experiments. This suggests that MIS 7 glacial inception is more favorable over this area than over North America. Furthermore, at 239 kyr, the perennial snow covers an area equivalent to that of MIS 5 glacial inception (115 kyr). The authors suggest that MIS 7 glacial inception is more extensive than MIS 5 glacial inception over the high latitudes.
    Description: Italian Ministry of Education, University and Research Ministry for Environment, Land and Sea through the project GEMINA
    Description: Published
    Description: 8918-8933
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: open
    Keywords: Arctic Oscillation ; Teleconnections ; Greenhouse gases ; Glaciation ; Paleoclimate ; 02. Cryosphere::02.03. Ice cores::02.03.05. Paleoclimate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2016-10-06
    Description: Heavy precipitation is a major hazard over Europe. It is well established that climate model projections indicate a tendency towards more extreme daily rainfall events. It is still uncertain, however, how this changing intensity translates at the sub-daily time scales. The main goal of the present study is to examine possible differences in projected changes in intense precipitation events over Europe at the daily and sub-daily (3-hourly) time scales using a state-of-the-science climate model. The focus will be on one Representative Concentration Pathway (RCP 8.5), considered as illustrative of a high rate of increase in greenhouse gas concentrations over this century. There are statistically significant differences in intense precipitation projections (up to 40%) when comparing the results at the daily and sub-daily time scales. Over north-eastern Europe, projected precipitation intensification at the 3-hour scale is lower than at the daily scale. On the other hand, Spain and the western seaboard exhibit an opposite behaviour, with stronger intensification at the 3-hour scale rather than daily scale. While the mean properties of the precipitation distributions are independent of the analysed frequency, projected precipitation intensification exhibits regional differences. This finding has implications on the extrapolation of impacts of intense precipitation events, given the daily time scale the analyses are usually performed at.
    Description: Published
    Description: 6193–6203
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: rainfall ; extreme events ; heavy precipitation ; snow ; europe ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
    Publication Date: 2017-04-04
    Description: Climate model simulations are currently the main tool to provide information about possible future climates. Apart from scenario uncertainties and model error, internal variability is a major source of uncertainty, complicating predictions of future changes. Here, a suite of statistical tests is proposed to determine the shortest time window necessary to capture the internal precipitation variability in a stationary climate. The length of this shortest window thus expresses internal variability in terms of years. The method is applied globally to daily precipitation in a 200-yr preindustrial climate simulation with the CMCC-CM coupled general circulation model. The two-sample Cramér–von Mises test is used to assess differences in precipitation distribution, the Walker test accounts for multiple testing at grid cell level, and field significance is determined by calculating the Bejamini–Hochberg false-discovery rate. Results for the investigated simulation show that internal variability of daily precipitation is regionally and seasonally dependent and that regions requiring long time windows do not necessarily coincide with areas with large standard deviation. The estimated time scales are longer over sea than over land, in the tropics than in midlatitudes, and in the transitional seasons than in winter and summer. For many land grid cells, 30 seasons suffice to capture the internal variability of daily precipitation. There exist regions, however, where even 50 years do not suffice to sample the internal variability. The results show that diagnosing daily precipitation change at different times based on fixed global snapshots of one climate simulation might not be a robust detection method.
    Description: Published
    Description: 3624–3630
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: precipitation ; internal variability ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2017-04-04
    Description: We acknowledge the World Climate Research Programme's Working Group on Coupled Modeling, which is responsible for CMIP, and we thank the climate modeling groups (listed in Table 1 of this paper) for producing and making available their model outputs. For CMIP the U.S. Department of Energy's Program for Climate Model Diagnosis and Intercomparison provides coordinating support and led development of software infrastructure in partnership with the Global Organization for Earth System Science Portals. The financial support of the Italian Ministry of Education, University and Research, and Ministry for Environment, Land and Sea through the project GEMINA and that of INDO-MARECLIM (Project 295092) is gratefully acknowledged. A. Cherchi thankfully acknowledges the generous hospitality of the International Pacific Research Center at UH Manoa, Honolulu. Jan Hafner is thanked for providing the moist static energy budget code used here and Matthew Windlansky is thanked for comments and proof reading. H. Annamalai acknowledges the partial support by the Office of Science (BER) U.S. Department of Energy, Grant DE-FG02-07ER6445, and also by the three institutional grants (JAMSTEC, NASA, NOAA) of the IPRC. Dr. Chen and an anonymous reviewer are acknowledged for the instructive and helpful comments given.
    Description: Dry summers over the eastern Mediterranean are characterized by strong descent anchored by long Rossby waves, which are forced by diabatic heating associated with summer monsoon rainfall over South Asia. The large-scale teleconnection between rising and subsiding air masses is referred to as the "monsoon-desert mechanism.'' This study evaluates the ability of the phase 5 of the Coupled Model Intercomparison Project (CMIP5) models in representing the physical processes involved in this mechanism. An evaluation of statistics between summer climatologies of monsoon diabatic heating and that of vertical velocity over the eastern Mediterranean suggests a linear relationship. Despite large spatial diversity in monsoon heating, descent over the Mediterranean is coherently located and realistic in intensity. To measure the sensitivity of descent to the diversity in the horizontal and vertical distribution of monsoon heating, a series of linear atmosphere model experiments are performed. It is shown that column-integrated heating over both the Bay of Bengal and the Arabian Sea provides the largest descent with a more realistic spatial pattern. In the vertical, CMIP5 models underestimate the diabatic heating at upper levels, while they overestimate it at lower levels, resulting in a weaker forced response and weaker associated descent over the Mediterranean. A moist static energy budget analysis applied to CMIP5 suggests that most models capture the dominant role of horizontal temperature advection and radiative fluxes in balancing descent over the Mediterranean. Based on the objective analysis herein, a subset of models is identified that captures the teleconnection for reasons consistent with observations. The recognized processes vary at interannual time scales as well, with imprints of severe weak/strong monsoons noticeable over the Mediterranean.
    Description: Italian Ministry of Education, University and Research Ministry for Environment, Land and Sea through the project GEMINA INDO-MARECLIM 295092 Office of Science (BER) U.S. Department of Energy DE-FG02-07ER6445 (JAMSTEC) of the IPRC (NASA) of the IPRC (NOAA) of the IPRC
    Description: Published
    Description: 6877-6903
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: open
    Keywords: Rossby waves ; Teleconnections ; Diabatic heating ; Coupled models ; Model evaluation/performance ; Interannual variability ; 03. Hydrosphere::03.01. General::03.01.03. Global climate models
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2017-04-04
    Description: Optimally modeling background-error horizontal correlations is crucial in ocean data assimilation. This paper investigates the impact of releasing the assumption of uniform background-error correlations in a global ocean variational analysis system. Spatially varying horizontal correlations are introduced in the recursive filter operator, which is used for modeling horizontal covariances in the Centro Euro-Mediterraneo sui Cambiamenti Climatici (CMCC) analysis system. The horizontal correlation length scales (HCLSs) were defined on the full three-dimensional model space and computed from both a dataset of monthly anomalies with respect to the monthly climatology and through the so-called National Meteorological Center (NMC) method. Different formulas for estimating the correlation length scale are also discussed and applied to the two forecast error datasets. The new formulation is tested within a 12-yr period (2000–11) in the ½° resolution system. The comparison with the data assimilation system using uniform background-error horizontal correlations indicates the superiority of the former, especially in eddy-dominated areas. Verification skill scores report a significant reduction of RMSE, and the use of nonuniform length scales improves the representation of the eddy kinetic energy at midlatitudes, suggesting that uniform, latitude, or Rossby radius-dependent formulations are insufficient to represent the geographical variations of the background-error correlations. Furthermore, a small tuning of the globally uniform value of the length scale was found to have a small impact on the analysis system. The use of either anomalies or NMC-derived correlation length scales also has a marginal effect with respect to the use of nonuniform HCLSs. On the other hand, the application of overestimated length scales has proved to be detrimental to the analysis system in all areas and for all parameters.
    Description: This work has received funding from the Italian Ministry of Education, University and Research and the Italian Ministry for the Environment, Land and Sea under the GEMINA project and from the European Commission's Copernicus program, previously known as the GMES program, under the MyOcean and MyOcean2 projects.
    Description: Published
    Description: 2330-2349
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: open
    Keywords: DATA ASSIMILATION SCHEME ; TROPICAL PACIFIC-OCEAN ; PART I ; VARIATIONAL ASSIMILATION ; COVARIANCE FUNCTIONS ; DIFFUSION EQUATION ; SYSTEM ; TEMPERATURE ; IMPLEMENTATION ; MODEL ; 03. Hydrosphere::03.01. General::03.01.04. Ocean data assimilation and reanalysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    American Meteorological Society
    In:  EPIC3Journal of Atmospheric and Oceanic Technology, American Meteorological Society, 32, pp. 591-602
    Publication Date: 2015-06-19
    Description: Iron in the vicinity of compasses results in magnetic deviations. ADCPs mounted on steel buoyancy devices and deployed on seven moorings on the East Greenland outer shelf and upper slope from 2007 to 2008 suffered from severe magnetic deviations of $〉$90$^\circ$ rendering the ADCP data useless without a compass correction. The effects on the measured velocities, which may also be present in other oceanic velocity measurements, are explained. On each of the moorings, velocity measurements from a different instrument which was assumed not to be affected by magnetic deviation are overlapping in space and time with the compromised ones. A method is described to determine the magnetic compass deviation from the compromised and uncompromised velocity measurements and the compromised compass headings. The method depends on the assumption that at least one instrument per mooring is not compromised. With this method, the magnetic deviation as well as the originally compromised velocity records can be corrected. The method is described in detail and a MATLAB(R) script implementing the method is supplied. The success of the method is demonstrated for one of the moorings.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 842–854, doi:10.1175/JTECH-D-14-00215.1.
    Description: The time and space variability of wave transformation through a tidal inlet is investigated with radar remote sensing. The frequency of wave breaking and the net wave breaking dissipation at high spatial resolution is estimated using image sequences acquired with a land-based X-band marine radar. Using the radar intensity data, transformed to normalized radar cross section σ0, the temporal and spatial distributions of wave breaking are identified using a threshold developed via the data probability density function. In addition, the inlet bathymetry is determined via depth inversion of the radar-derived frequencies and wavenumbers of the surface waves using a preexisting algorithm (cBathy). Wave height transformation is calculated through the 1D cross-shore energy flux equation incorporating the radar-estimated breaking distribution and bathymetry. The accuracy of the methodology is tested by comparison with in situ wave height observations over a 9-day period, obtaining correlation values R = 0.68 to 0.96, and root-mean-square errors from 0.05 to 0.19 m. Predicted wave forcing, computed as the along-inlet gradient of the cross-shore radiation stress was onshore during high-wave conditions, in good agreement (R = 0.95) with observations.
    Description: These data were collected as part of a joint field program, Data Assimilation and Remote Sensing for Littoral Applications (DARLA) and Rivers and Inlets (RIVET-1), both funded by the Office of Naval Research. The authors were funded through the Office of Naval Research Grant N00014-10-1-0932 and the Office of the Assistant Secretary of Defense for Research and Engineering.
    Description: 2015-10-01
    Keywords: Wave breaking ; Waves, oceanic ; Wind waves ; In situ oceanic observations ; Radars/Radar observations ; Remote sensing
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2006–2024, doi:10.1175/JPO-D-14-0234.1.
    Description: The effects of wind-driven whitecapping on the evolution of the ocean surface boundary layer are examined using an idealized one-dimensional Reynolds-averaged Navier–Stokes numerical model. Whitecapping is parameterized as a flux of turbulent kinetic energy through the sea surface and through an adjustment of the turbulent length scale. Simulations begin with a two-layer configuration and use a wind that ramps to a steady stress. This study finds that the boundary layer begins to thicken sooner in simulations with whitecapping than without because whitecapping introduces energy to the base of the boundary layer sooner than shear production does. Even in the presence of whitecapping, shear production becomes important for several hours, but then inertial oscillations cause shear production and whitecapping to alternate as the dominant energy sources for mixing. Details of these results are sensitive to initial and forcing conditions, particularly to the turbulent length scale imposed by breaking waves and the transfer velocity of energy from waves to turbulence. After 1–2 days of steady wind, the boundary layer in whitecapping simulations has thickened more than the boundary layer in simulations without whitecapping by about 10%–50%, depending on the forcing and initial conditions.
    Description: We thank Skidmore College for financial and infrastructure support, and Skidmore and the National Science Foundation for funding travel to meetings where early versions of this work were presented. We also thank the National Science Foundation, Oregon State University, Jonathan Nash, and Joe Jurisa for funding and hosting a workshop on River Plume Mixing in October, 2013, where ideas and context for this paper were developed.
    Description: 2016-02-01
    Keywords: Circulation/ Dynamics ; Mixing ; Turbulence ; Wave breaking ; Wind stress ; Atm/Ocean Structure/ Phenomena ; Mixed layer
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 8574–8584, doi:10.1175/JCLI-D-14-00809.1.
    Description: The subsurface ocean response to anthropogenic climate forcing remains poorly characterized. From the Coupled Model Intercomparison Project (CMIP), a robust response of the lower thermocline is identified, where the warming is considerably weaker in the subtropics than in the tropics and high latitudes. The lower thermocline change is inversely proportional to the thermocline depth in the present climatology. Ocean general circulation model (OGCM) experiments show that sea surface warming is the dominant forcing for the subtropical gyre change in contrast to natural variability for which wind dominates, and the ocean response is insensitive to the spatial pattern of surface warming. An analysis based on a ventilated thermocline model shows that the pattern of the lower thermocline change can be interpreted in terms of the dynamic response to the strengthened stratification and downward heat mixing. Consequently, the subtropical gyres become intensified at the surface but weakened in the lower thermcline, consistent with results from CMIP experiments.
    Description: The work was supported by the National Basic Research Program of China (2012CB955600), the National Natural Science Foundation of China (41125019, 41206021), and the U.S. National Science Foundation (AGS 1249145, 1305719).
    Description: 2016-05-01
    Keywords: Circulation/ Dynamics ; Ocean circulation ; Physical Meteorology and Climatology ; Climate change
    Repository Name: Woods Hole Open Access Server
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  • 11
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    American Meteorological Society
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 546–561, doi:10.1175/JPO-D-14-0082.1.
    Description: Model studies and observations in the Hudson River estuary indicate that frontogenesis occurs as a result of topographic forcing. Bottom fronts form just downstream of lateral constrictions, where the width of the estuary increases in the down-estuary (i.e., seaward) direction. The front forms during the last several hours of the ebb, when the combination of adverse pressure gradient in the expansion and baroclinicity cause a stagnation of near-bottom velocity. Frontogenesis is observed in two dynamical regimes: one in which the front develops at a transition from subcritical to supercritical flow and the other in which the flow is everywhere supercritical. The supercritical front formation appears to be associated with lateral flow separation. Both types of fronts are three-dimensional, with strong lateral gradients along the flanks of the channel. During spring tide conditions, the fronts dissipate during the flood, whereas during neap tides the fronts are advected landward during the flood. The zone of enhanced density gradient initiates frontogenesis at multiple constrictions along the estuary as it propagates landward more than 60 km during several days of neap tides. Frontogenesis and frontal propagation may thus be essential elements of the spring-to-neap transition to stratified conditions in partially mixed estuaries.
    Description: Support for this research was provided by NSF Grant OCE 0926427.
    Description: 2015-08-01
    Keywords: Circulation/ Dynamics ; Baroclinic flows ; Coastal flows ; Frontogenesis/frontolysis ; Fronts
    Repository Name: Woods Hole Open Access Server
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  • 12
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    American Meteorological Society
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 606–612, doi:10.1175/JPO-D-14-0221.1.
    Description: Mesoscale intrathermocline lenses are observed throughout the World Ocean and are commonly attributed to water mass anomalies advected from a distant origin. An alternative mechanism of local generation is offered herein, in which eddy–wind interaction can create lens-shaped disturbances in the thermocline. Numerical simulations illustrate how eddy–wind-driven upwelling in anticyclones can yield a convex lens reminiscent of a mode water eddy, whereas eddy–wind-driven downwelling in cyclones produces a concave lens that thins the mode water layer (a cyclonic “thinny”). Such transformations should be observable with long-term time series in the interiors of mesoscale eddies.
    Description: Support of this research by the National Science Foundation and National Aeronautics and Space Administration is gratefully acknowledged.
    Description: 2015-08-01
    Keywords: Circulation/ Dynamics ; Eddies ; Ekman pumping/transport ; Mesoscale processes ; Models and modeling ; Ocean models ; Primitive equations model
    Repository Name: Woods Hole Open Access Server
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  • 13
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 1126–1147, doi:10.1175/JCLI-D-14-00285.1.
    Description: The local atmospheric response to a realistic shift of the Oyashio Extension SST front in the western North Pacific is analyzed using a high-resolution (HR; 0.25°) version of the global Community Atmosphere Model, version 5 (CAM5). A northward shift in the SST front causes an atmospheric response consisting of a weak surface wind anomaly but a strong vertical circulation extending throughout the troposphere. In the lower troposphere, most of the SST anomaly–induced diabatic heating is balanced by poleward transient eddy heat and moisture fluxes. Collectively, this response differs from the circulation suggested by linear dynamics, where extratropical SST forcing produces shallow anomalous heating balanced by strong equatorward cold air advection driven by an anomalous, stationary surface low to the east. This latter response, however, is obtained by repeating the same experiment except using a relatively low-resolution (LR; 1°) version of CAM5. Comparison to observations suggests that the HR response is closer to nature than the LR response. Strikingly, HR and LR experiments have almost identical vertical profiles of . However, diagnosis of the diabatic quasigeostrophic vertical pressure velocity (ω) budget reveals that HR has a substantially stronger response, which together with upper-level mean differential thermal advection balances stronger vertical motion. The results herein suggest that changes in transient eddy heat and moisture fluxes are critical to the overall local atmospheric response to Oyashio Front anomalies, which may consequently yield a stronger downstream response. These changes may require the high resolution to be fully reproduced, warranting further experiments of this type with other high-resolution atmosphere-only and fully coupled GCMs.
    Description: We gratefully acknowledge funding provided by NSF to DS and MN (AGS CLD 1035325) and Y-OK and CF (AGS CLD 1035423) and by DOE to Y-OK (DE-SC0007052).
    Description: 2015-08-01
    Keywords: Atmosphere-ocean interaction ; Atmospheric circulation ; Boundary layer ; Cyclogenesis/cyclolysis ; Diabatic heating ; Extratropical cyclones
    Repository Name: Woods Hole Open Access Server
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  • 14
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 966–987, doi:10.1175/JPO-D-14-0110.1.
    Description: A key remaining challenge in oceanography is the understanding and parameterization of small-scale mixing. Evidence suggests that topographic features play a significant role in enhancing mixing in the Southern Ocean. This study uses 914 high-resolution hydrographic profiles from novel EM-APEX profiling floats to investigate turbulent mixing north of the Kerguelen Plateau, a major topographic feature in the Southern Ocean. A shear–strain finescale parameterization is applied to estimate diapycnal diffusivity in the upper 1600 m of the ocean. The indirect estimates of mixing match direct microstructure profiler observations made simultaneously. It is found that mixing intensities have strong spatial and temporal variability, ranging from O(10−6) to O(10−3) m2 s−1. This study identifies topographic roughness, current speed, and wind speed as the main factors controlling mixing intensity. Additionally, the authors find strong regional variability in mixing dynamics and enhanced mixing in the Antarctic Circumpolar Current frontal region. This enhanced mixing is attributed to dissipating internal waves generated by the interaction of the Antarctic Circumpolar Current and the topography of the Kerguelen Plateau. Extending the mixing observations from the Kerguelen region to the entire Southern Ocean, this study infers a large water mass transformation rate of 17 Sverdrups (Sv; 1 Sv ≡ 106 m3 s−1) across the boundary of Antarctic Intermediate Water and Upper Circumpolar Deep Water in the Antarctic Circumpolar Current. This work suggests that the contribution of mixing to the Southern Ocean overturning circulation budget is particularly significant in fronts.
    Description: AM was supported by the joint CSIRO–University of Tasmania Quantitative Marine Science (QMS) program and the 2009 CSIRO Wealth from Ocean Flagship Collaborative Fund. BMS was supported by the Australian Climate Change Science Program, jointly funded by the Department of the Environment and CSIRO. KLPs salary support was provided by Woods Hole Oceanographic Institution bridge support funds.
    Description: 2015-10-01
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Diapycnal mixing ; Fronts ; Ocean circulation ; Topographic effects ; Atm/Ocean Structure/ Phenomena ; Mixing
    Repository Name: Woods Hole Open Access Server
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  • 15
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1610–1631, doi:10.1175/JPO-D-14-0047.1.
    Description: The use of a measure to diagnose submesoscale isopycnal diffusivity by determining the best match between observations of a tracer and simulations with varying small-scale diffusivities is tested. Specifically, the robustness of a “roughness” measure to discriminate between tracer fields experiencing different submesoscale isopycnal diffusivities and advected by scaled altimetric velocity fields is investigated. This measure is used to compare numerical simulations of the tracer released at a depth of about 1.5 km in the Pacific sector of the Southern Ocean during the Diapycnal and Isopycnal Mixing Experiment in the Southern Ocean (DIMES) field campaign with observations of the tracer taken on DIMES cruises. The authors find that simulations with an isopycnal diffusivity of ~20 m2 s−1 best match observations in the Pacific sector of the Antarctic Circumpolar Current (ACC), rising to ~20–50 m2 s−1 through Drake Passage, representing submesoscale processes and any mesoscale processes unresolved by the advecting altimetry fields. The roughness measure is demonstrated to be a statistically robust way to estimate a small-scale diffusivity when measurements are relatively sparse in space and time, although it does not work if there are too few measurements overall. The planning of tracer measurements during a cruise in order to maximize the robustness of the roughness measure is also considered. It is found that the robustness is increased if the spatial resolution of tracer measurements is increased with the time since tracer release.
    Description: We thank the U.K. Natural Environment Research Council and the U.S. National Science Foundation for funding the DIMES project.
    Description: 2015-12-01
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Diffusion ; Physical Meteorology and Climatology ; Isopycnal mixing ; Observational techniques and algorithms ; Tracers ; Models and modeling ; Model comparison ; Tracers
    Repository Name: Woods Hole Open Access Server
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  • 16
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric Sciences 72 (2015): 2786–2805, doi:10.1175/JAS-D-14-0257.1.
    Description: In Ammassalik, in southeast Greenland, downslope winds can reach hurricane intensity and represent a hazard for the local population and environment. They advect cold air down the ice sheet and over the Irminger Sea, where they drive large ocean–atmosphere heat fluxes over an important ocean convection region. Earlier studies have found them to be associated with a strong katabatic acceleration over the steep coastal slopes, flow convergence inside the valley of Ammassalik, and—in one instance—mountain wave breaking. Yet, for the general occurrence of strong downslope wind events, the importance of mesoscale processes is largely unknown. Here, two wind events—one weak and one strong—are simulated with the atmospheric Weather Research and Forecasting (WRF) Model with different model and topography resolutions, ranging from 1.67 to 60 km. For both events, but especially for the strong one, it is found that lower resolutions underestimate the wind speed because they misrepresent the steepness of the topography and do not account for the underlying wave dynamics. If a 5-km model instead of a 60-km model resolution in Ammassalik is used, the flow associated with the strong wind event is faster by up to 20 m s−1. The effects extend far downstream over the Irminger Sea, resulting in a diverging spatial distribution and temporal evolution of the heat fluxes. Local differences in the heat fluxes amount to 20%, with potential implications for ocean convection.
    Description: This study was supported by grants of the National Science Foundation (OCE- 0751554 and OCE-1130008) as well as the Natural Sciences and Engineering Research Council of Canada.
    Description: 2016-01-01
    Keywords: Katabatic winds ; Severe storms ; Air-sea interaction ; Mesoscale processes ; Orographic effects ; Model evaluation/performance
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  • 17
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 6489–6502, doi:10.1175/JCLI-D-15-0143.1.
    Description: The global water cycle is predicted to intensify under various greenhouse gas emissions scenarios. Here the nature and strength of the expected changes for the ocean in the coming century are assessed by examining the output of several CMIP5 model runs for the periods 1990–2000 and 2090–2100 and comparing them to a dataset built from modern observations. Key elements of the water cycle, such as the atmospheric vapor transport, the evaporation minus precipitation over the ocean, and the surface salinity, show significant changes over the coming century. The intensification of the water cycle leads to increased salinity contrasts in the ocean, both within and between basins. Regional projections for several areas important to large-scale ocean circulation are presented, including the export of atmospheric moisture across the tropical Americas from Atlantic to Pacific Ocean, the freshwater gain of high-latitude deep water formation sites, and the basin averaged evaporation minus precipitation with implications for interbasin mass transports.
    Description: This research was supported by NASA Grant NNX12AF59GS03.
    Description: 2016-02-15
    Keywords: Climate change ; Climate prediction ; Hydrologic cycle ; Salinity ; Water budget ; Water vapor
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  • 18
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 5885–5907, doi:10.1175/JCLI-D-14-00635.1.
    Description: The structure, variability, and regional connectivity of the Tokar Gap jet (TGJ) are described using WRF Model analyses and supporting atmospheric datasets from the East African–Red Sea–Arabian Peninsula (EARSAP) region during summer 2008. Sources of the TGJ’s unique quasi-diurnal nature and association with atypically high atmospheric moisture transport are traced back to larger-scale atmospheric dynamics influencing its forcing. These include seasonal shifts in the intertropical convergence zone (ITCZ), variability of the monsoon and North African wind regimes, and ties to other orographic flow patterns. Strong modulation of the TGJ by regional processes such as the desert heating cycle, wind convergence at the ITCZ surface front, and the local land–sea breeze cycle are described. Two case studies present the interplay of these influences in detail. The first of these was an “extreme” gap wind event on 12 July, in which horizontal velocities in the Tokar Gap exceeded 26 m s−1 and the flow from the jet extended the full width of the Red Sea basin. This event coincided with development of a large mesoscale convective complex (MCC) and precipitation at the entrance of the Tokar Gap as well as smaller gaps downstream along the Arabian Peninsula. More typical behavior of the TGJ during the 2008 summer is discussed using a second case study on 19 July. Downwind impact of the TGJ is evaluated using Lagrangian model trajectories and analysis of the lateral moisture fluxes (LMFs) during jet events. These results suggest means by which TGJ contributes to large LMFs and has potential bearing upon Sahelian rainfall and MCC development.
    Description: This work was supported by a grant from the King Abdullah University of Science and Technology (KAUST) as well as National Science Foundation Grant OCE0927017 and from DOD (MURI) Grant N000141110087, administered by the Office of Naval Research.
    Description: 2016-02-01
    Keywords: Africa ; Orographic effects ; Monsoons ; Atmosphere-land interaction ; Atmosphere-ocean interaction ; Hydrometeorology
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  • 19
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2598–2620, doi:10.1175/JPO-D-14-0249.1.
    Description: Through combining analytical arguments and numerical models, this study investigates the finite-amplitude meanders of shelfbreak fronts characterized by sloping isopycnals outcropping at both the surface and the shelfbreak bottom. The objective is to provide a formula for the meander length scale that can explain observed frontal length scale variability and also be verified with observations. Considering the frontal instability to be a mixture of barotropic and baroclinic instability, the derived along-shelf meander length scale formula is [b1/(1 + a1S1/2)]NH/f, where N is the buoyancy frequency; H is the depth of the front; f is the Coriolis parameter; S is the Burger number measuring the ratio of energy conversion associated with barotropic and baroclinic instability; and a1 and b1 are empirical constants. Initial growth rate of the frontal instability is formulated as [b2(1 + a1S1/2)/(1 + a2αS1/2)]NH/L, where α is the bottom slope at the foot of the front, and a2 and b2 are empirical constants. The formulas are verified using numerical sensitivity simulations, and fitting of the simulated and formulated results gives a1 = 2.69, b1 = 14.65, a2 = 5.1 × 103, and b2 = 6.2 × 10−2. The numerical simulations also show development of fast-growing frontal symmetric instability when the minimum initial potential vorticity is negative. Although frontal symmetric instability leads to faster development of barotropic and baroclinic instability at later times, it does not significantly influence the meander length scale. The derived meander length scale provides a framework for future studies of the influences of external forces on shelfbreak frontal circulation and cross-frontal exchange.
    Description: WGZ and GGG were supported by the National Science Foundation through Grant OCE-1129125.
    Description: 2016-04-01
    Keywords: Circulation/ Dynamics ; Instability ; Ocean circulation ; Topographic effects ; Atm/Ocean Structure/ Phenomena ; Fronts ; Models and modeling ; Numerical analysis/modeling
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  • 20
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    American Meteorological Society
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2820–2835, doi:10.1175/JPO-D-15-0101.1.
    Description: The response of a convective ocean basin to variations in atmospheric temperature is explored using numerical models and theory. The results indicate that the general behavior depends strongly on the frequency at which the atmosphere changes relative to the local response time to air–sea heat flux. For high-frequency forcing, the convective region in the basin interior is essentially one-dimensional and responds to the integrated local surface heat flux anomalies. For low-frequency forcing, eddy fluxes from the boundary current into the basin interior become important and act to suppress variability forced by the atmosphere. A theory is developed to quantify this time-dependent response and its influence on various oceanic quantities. The amplitude and phase of the temperature and salinity of the convective water mass, the meridional overturning circulation, the meridional heat flux, and the air–sea heat flux predicted by the theory compare well with that diagnosed from a series of numerical model calculations in both strongly eddying and weakly eddying regimes. Linearized analytic solutions provide direct estimates of each of these quantities and demonstrate their dependence on the nondimensional numbers that characterize the domain and atmospheric forcing. These results highlight the importance of mesoscale eddies in modulating the mean and time-dependent ocean response to atmospheric variability and provide a dynamical framework with which to connect ocean observations with changes in the atmosphere and surface heat flux.
    Description: This study was supported by the National Science Foundation under Grant OCE-1232389.
    Description: 2016-05-01
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Deep convection ; Eddies ; Meridional overturning circulation
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  • 21
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 31 (2014): 2844–2857, doi:10.1175/JTECH-D-14-00108.1.
    Description: A fiber optic–based spectrometry system was developed to enable automated, long-term measurements of spectral irradiance in sea ice environments. This system utilizes a single spectrometer module that measures the irradiance transmitted by multiple optical fibers, each coupled to the input fiber of the module via a mechanical rotary multiplexer. Small custom-printed optical diffusers, fixed to the input end of each fiber, allow these probes to be frozen into ice auger holes as small as 5 cm in diameter. Temperature-dependent biases in the spectrometer module and associated electronics were examined down to −40°C using an environmental chamber to identify any artifacts that might arise when operating these electronic and optical components below their vendor-defined lower temperature limits. The optical performance of the entire system was assessed by freezing multiple fiber probes in a 1.2-m-tall ice column, illuminating from above with a light source, and measuring spectral irradiance distributions at different depths within the ice column. Results indicated that the radiometric sensitivity of this fiber-based system is comparable to that of commercially available oceanographic spectroradiometers.
    Description: This research was supported by the Joint Initiative Awards Fund from the Andrew W. Mellon Foundation, through Woods Hole Oceanographic Institution’s internal Interdisciplinary Study Award program (S. R. L. and T. M.), and by a China scholarship council (CSC) scholarship and the Program for Zhejiang Leading Team of S&T Innovation (Grant 2010R50036) provided to H. W.
    Description: 2015-06-01
    Keywords: Sea ice ; In situ oceanic observations
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  • 22
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 412–433, doi:10.1175/JTECH-D-14-00080.1.
    Description: A near-surface specific humidity (Qa) and air temperature (Ta) climatology on daily and 0.25° grids was constructed by the objectively analyzed air–sea fluxes (OAFlux) project by objectively merging two recent satellite-derived high-resolution analyses, the OAFlux existing 1° analysis, and atmospheric reanalyses. The two satellite products include the multi-instrument microwave regression (MIMR) Qa and Ta analysis and the Goddard Satellite-Based Surface Turbulent Fluxes, version 3 (GSSTF3), Qa analysis. This study assesses the degree of improvement made by OAFlux using buoy time series measurements at 137 locations and a global empirical orthogonal function (EOF) analysis. There are a total of 130 855 collocated daily values for Qa and 283 012 collocated daily values for Ta in the buoy evaluation. It is found that OAFlux Qa has a mean difference close to 0 and a root-mean-square (RMS) difference of 0.73 g kg−1, and Ta has a mean difference of −0.03°C and an RMS difference of 0.45°C. OAFlux shows no major systematic bias with respect to buoy measurements over all buoy locations except for the vicinity of the Gulf Stream boundary current, where the RMS difference exceeds 1.8°C in Ta and 1.2 g kg−1 in Qa. The buoy evaluation indicates that OAFlux represents an improvement over MIMR and GSSTF3. The global EOF-based intercomparison analysis indicates that OAFlux has a similar spatial–temporal variability pattern with that of three atmospheric reanalyses including MERRA, NCEP-1, and ERA-Interim, but that it differs from GSSTF3 and the Climate Forecast System Reanalysis (CFSR).
    Description: This study was supported by the NOAA Ocean Climate Observation (OCO) program under Grant NA09OAR4320129.
    Description: 2015-09-01
    Keywords: Data processing ; Databases ; In situ oceanic observations ; Satellite observations
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  • 23
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015):1189–1204, doi:10.1175/JPO-D-14-0122.1.
    Description: Winter outcropping of the Eighteen Degree Water (EDW) and its subsequent dispersion are studied using a ° eddy-resolving simulation of the Family of Linked Atlantic Modeling Experiments (FLAME). Outcropped EDW columns in the model simulations are detected in each winter from 1990 to 1999, and particles are deployed in the center of each outcropped EDW column. Subsequently, the trajectories of these particles are calculated for the following 5 yr. The particles slowly spread away from the outcropping region into the nonoutcropping/subducted EDW region south of ~30°N and eventually to the non-EDW region in the greater subtropical gyre. Approximately 30% of the particles are found in non-EDW waters 1 yr after deployment; after 5 yr, only 25% of the particles are found within EDW. The reoutcropping time is defined as the number of years between when a particle is originally deployed in an outcropping EDW column and when that particle is next found in an outcropping EDW column. Of the particles, 66% are found to reoutcrop as EDW in 1 yr, and less than 5% of the particles outcrop in each of the subsequent 4 yr. While the individual trajectories exhibit significant eddy-like motions, the time scale of reoutcropping is primarily set by the mean circulation. The dominance of reoutcropping in 1 yr suggests that EDW outcropping contributes considerably to the persistence of surface temperature anomalies from one winter to the next, that is, the reemergence of winter sea surface temperature anomalies.
    Description: We gratefully acknowledge the support from the NSF OCE Physical Oceanography program (NSF OCE-0961090 to Y-OK and J-JP; NSF OCE-0960776 to MSL and SFG; and NSF OCE-1242989 to Y-OK).
    Description: 2015-10-01
    Keywords: Circulation/ Dynamics ; Ocean circulation ; Atm/Ocean Structure/ Phenomena ; Water masses
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  • 24
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 3004–3023, doi:10.1175/JCLI-D-14-00591.1.
    Description: Time series of surface meteorology and air–sea exchanges of heat, freshwater, and momentum collected from a long-term surface mooring located 1600 km west of the coast of northern Chile are analyzed. The observations, spanning 2000–10, have been withheld from assimilation into numerical weather prediction models. As such, they provide a unique in situ record of atmosphere–ocean coupling in a trade wind region characterized by persistent stratocumulus clouds. The annual cycle is described, as is the interannual variability. Annual variability in the air–sea heat flux is dominated by the annual cycle in net shortwave radiation. In austral summer, the ocean is heated; the 9-yr mean annual heating of the ocean is 38 W m−2. Ocean cooling is seen in 2006–08, coincident with La Niña events. Over the full record, significant trends were found. Increases in wind speed, wind stress, and latent heat flux over 9 yr were 0.8 m s−1, 0.022 N m−2, and 20 W m−2 or 13%, 29%, and 20% of the respective 9-yr means. The decrease in the annual mean net heat flux was 39 W m−2 or 104% of the mean. These changes were found to be largely associated with spring and fall. If this change persists, the annual mean net air–sea heat flux will change sign by 2016, when the magnitude of the wind stress will have increased by close to 60%.
    Description: This work is supported by the NOAA Climate Observation Division (NA09OAR4320129).
    Keywords: Climate variability ; Trends
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  • 25
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1410–1425, doi:10.1175/JPO-D-14-0192.1.
    Description: The west-to-east crossover of boundary currents has been seen in mean circulation schemes from several past models of the Red Sea. This study investigates the mechanisms that produce and control the crossover in an idealized, eddy-resolving numerical model of the Red Sea. The authors also review the observational evidence and derive an analytical estimate for the crossover latitude. The surface buoyancy loss increases northward in the idealized model, and the resultant mean circulation consists of an anticyclonic gyre in the south and a cyclonic gyre in the north. In the midbasin, the northward surface flow crosses from the western boundary to the eastern boundary. Numerical experiments with different parameters indicate that the crossover latitude of the boundary currents changes with f0, β, and the meridional gradient of surface buoyancy forcing. In the analytical estimate, which is based on quasigeostrophic, β-plane dynamics, the crossover is predicted to lie at the latitude where the net potential vorticity advection (including an eddy component) is zero. Various terms in the potential vorticity budget can be estimated using a buoyancy budget, a thermal wind balance, and a parameterization of baroclinic instability.
    Description: This work is supported by Award USA 00002, KSA 00011, and KSA 00011/02 made by King Abdullah University of Science and Technology (KAUST), by National Science Foundation Grants OCE0927017, OCE1154641, and OCE85464100, and by the Woods Hole Oceanographic Institution Academic Program Office.
    Description: 2015-11-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Buoyancy ; Ocean circulation ; Ocean dynamics
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  • 26
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1822–1842, doi:10.1175/JPO-D-14-0147.1.
    Description: Influences of time-dependent precipitation on water mass transformation and heat budgets in an idealized marginal sea are examined using theoretical and numerical models. The equations proposed by Spall in 2012 are extended to cases with time-dependent precipitation whose form is either a step function or a sinusoidal function. The theory predicts the differences in temperature and salinity between the convective water and the boundary current as well as the magnitudes of heat fluxes into the marginal sea and across the sea surface. Moreover, the theory reveals that there are three inherent time scales: relaxation time scales for temperature and salinity and a precipitation time scale. The relaxation time scales are determined by a steady solution of the theoretical model with steady precipitation. The relaxation time scale for temperature is always smaller than that for salinity as a result of not only the difference in the form of fluxes at the surface but also the variation in the eddy transport from the boundary current. These three time scales and the precipitation amplitude determine the strength of the ocean response to changes in precipitation and the phase relation between precipitation, changes in salinity and temperature, and changes in heat fluxes. It is demonstrated that the theoretical predictions agree qualitatively well with results from the eddy-resolving numerical model. This demonstrates the fundamental role of mesoscale eddies in the ocean response to time-dependent forcing and provides a framework with which to assess the extent to which observed variability in marginal sea convection and water mass transformation are consistent with an external forcing by variations in precipitation.
    Description: This work was initiated at the 2013 WHOI Geophysical Fluid Dynamics Summer Program, which was supported by the National Science Foundation and the Office of Naval Research. This work was also supported by Grant-in-Aid for Research Fellow (25·8466) of the Ministry of Education, Culture, Sports and Technology (MEXT), Japan, the Program for Leading Graduate Schools, MEXT, Japan (YY), and by the National Science Foundation Grant OCE-1232389 (MAS).
    Description: 2016-01-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Deep convection ; Eddies ; Ocean dynamics ; Atm/Ocean Structure/ Phenomena ; Precipitation
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  • 27
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2806–2819, doi:10.1175/JPO-D-15-0061.1.
    Description: An eastward-flowing current of a homogeneous fluid with velocity U, contained in a channel of width L, impinges on an island of width of O(L), and the resulting interaction and dynamics are studied for values of the supercriticality parameter, b = βL2/U, both larger and smaller than π2. The former case is subcritical with respect to Rossby waves, and the latter is supercritical. The nature of the flow field depends strongly on b, and in particular, the nature of the flow around the island and the proportion of the flow passing to the north or south of the island are sensitive to b and to the position of the island in the channel. The problem is studied analytically in a relatively simple, nonlinear quasigeostrophic and adiabatic framework and numerically with a shallow-water model that allows a qualitative extension of the results to the equator. Although the issues involved are motivated by the interaction of the Equatorial Undercurrent and the Galapagos Islands, the analysis presented here focuses on the fundamental issue of the distinctive nature of the flow as a function of Rossby wave criticality.
    Description: Supported by the National Science Foundation Grant OCE-0959381.
    Description: 2016-05-01
    Keywords: Circulation/ Dynamics ; Ocean circulation ; Ocean dynamics ; Waves, oceanic
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  • 28
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2773–2789, doi:10.1175/JPO-D-15-0031.1.
    Description: Tidal oscillatory salt transport, induced by the correlation between tidal variations in salinity and velocity, is an important term for the subtidal salt balance under the commonly used Eulerian method of salt transport decomposition. In this paper, its mechanisms in a partially stratified estuary are investigated with a numerical model of the Hudson estuary. During neap tides, when the estuary is strongly stratified, the tidal oscillatory salt transport is mainly due to the hydraulic response of the halocline to the longitudinal variation of topography. This mechanism does not involve vertical mixing, so it should not be regarded as oscillatory shear dispersion, but instead it should be regarded as advective transport of salt, which results from the vertical distortion of exchange flow obtained in the Eulerian decomposition by vertical fluctuations of the halocline. During spring tides, the estuary is weakly stratified, and vertical mixing plays a significant role in the tidal variation of salinity. In the spring tide regime, the tidal oscillatory salt transport is mainly due to oscillatory shear dispersion. In addition, the transient lateral circulation near large channel curvature causes the transverse tilt of the halocline. This mechanism has little effect on the cross-sectionally integrated tidal oscillatory salt transport, but it results in an apparent left–right cross-channel asymmetry of tidal oscillatory salt transport. With the isohaline framework, tidal oscillatory salt transport can be regarded as a part of the net estuarine salt transport, and the Lagrangian advective mechanism and dispersive mechanism can be distinguished.
    Description: Tao Wang was supported by the Open Research Fund of State Key Laboratory of Estuarine and Coastal Research (Grant SKLEC-KF201509) and Chinese Scholarship Council. Geyer was supported by by NSF Grant OCE 0926427. Wensheng Jiang was supported by NSFC-Shandong Joint Fund for Marine Science Research Centers (Grant U1406401).
    Description: 2016-05-01
    Keywords: Geographic location/entity ; Estuaries ; Circulation/ Dynamics ; Baroclinic flows ; Dispersion ; Shear structure/flows ; Atm/Ocean Structure/ Phenomena ; Diapycnal mixing ; Models and modeling ; Regional models
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  • 29
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 3033–3053, doi:10.1175/JPO-D-13-0227.1.
    Description: The East Greenland Current (EGC) had long been considered the main pathway for the Denmark Strait overflow (DSO). Recent observations, however, indicate that the north Icelandic jet (NIJ), which flows westward along the north coast of Iceland, is a major separate pathway for the DSO. In this study a two-layer numerical model and complementary integral constraints are used to examine various pathways that lead to the DSO and to explore plausible mechanisms for the NIJ’s existence. In these simulations, a westward and NIJ-like current emerges as a robust feature and a main pathway for the Denmark Strait overflow. Its existence can be explained through circulation integrals around advantageous contours. One such constraint spells out the consequences of overflow water as a source of low potential vorticity. A stronger constraint can be added when the outflow occurs through two outlets: it takes the form of a circulation integral around the Iceland–Faroe Ridge. In either case, the direction of overall circulation about the contour can be deduced from the required frictional torques. Some effects of wind stress forcing are also examined. The overall positive curl of the wind forces cyclonic gyres in both layers, enhancing the East Greenland Current. The wind stress forcing weakens but does not eliminate the NIJ. It also modifies the sign of the deep circulation in various subbasins and alters the path by which overflow water is brought to the Faroe Bank Channel, all in ways that bring the idealized model more in line with observations. The sequence of numerical experiments separates the effects of wind and buoyancy forcing and shows how each is important.
    Description: This study has been supported by National Science Foundation (OCE0927017 and ARC1107412).
    Description: 2015-06-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Channel flows ; Meridional overturning circulation ; Ocean circulation ; Topographic effects
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  • 30
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1356–1375, doi:10.1175/JPO-D-13-0259.1.
    Description: Eddy–mean flow interactions along the Kuroshio Extension (KE) jet are investigated using a vorticity budget of a high-resolution ocean model simulation, averaged over a 13-yr period. The simulation explicitly resolves mesoscale eddies in the KE and is forced with air–sea fluxes representing the years 1995–2007. A mean-eddy decomposition in a jet-following coordinate system removes the variability of the jet path from the eddy components of velocity; thus, eddy kinetic energy in the jet reference frame is substantially lower than in geographic coordinates and exhibits a cross-jet asymmetry that is consistent with the baroclinic instability criterion of the long-term mean field. The vorticity budget is computed in both geographic (i.e., Eulerian) and jet reference frames; the jet frame budget reveals several patterns of eddy forcing that are largely attributed to varicose modes of variability. Eddies tend to diffuse the relative vorticity minima/maxima that flank the jet, removing momentum from the fast-moving jet core and reinforcing the quasi-permanent meridional meanders in the mean jet. A pattern associated with the vertical stretching of relative vorticity in eddies indicates a deceleration (acceleration) of the jet coincident with northward (southward) quasi-permanent meanders. Eddy relative vorticity advection outside of the eastward jet core is balanced mostly by vertical stretching of the mean flow, which through baroclinic adjustment helps to drive the flanking recirculation gyres. The jet frame vorticity budget presents a well-defined picture of eddy activity, illustrating along-jet variations in eddy–mean flow interaction that may have implications for the jet’s dynamics and cross-frontal tracer fluxes.
    Description: A. S. Delman (ASD) and J. L. McClean (JLM) were supported by NSF Grant OCE-0850463 and Office of Science (BER), U.S. Department of Energy, Grant DE-FG02-05ER64119. ASD and J. Sprintall were also supported by a NASA Earth and Space Science Fellowship (NESSF), Grant NNX13AM93H. JLM was also supported by U.S. DOE Office of Science grant entitled “Ultra-High Resolution Global Climate Simulation” via a Los Alamos National Laboratory subcontract. S. R. Jayne was supported by NSF Grant OCE-0849808. Computational resources for the model run were provided by NSF Resource Grants TG-OCE110013 and TG-OCE130010.
    Description: 2015-11-01
    Keywords: Geographic location/entity ; North Pacific Ocean ; Circulation/ Dynamics ; Forcing ; Instability ; Mesoscale processes ; Atm/Ocean Structure/ Phenomena ; Jets ; Models and modeling ; General circulation models
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  • 31
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 1042–1057, doi:10.1175/JTECH-D-14-00161.1.
    Description: A 1-yr experiment using a pressure-sensor-equipped inverted echo sounder (PIES) was conducted in Sermilik Fjord in southeastern Greenland (66°N, 38°E) from August 2011 to September 2012. Based on these high-latitude data, the interpretation of PIESs’ acoustic travel-time records from regions that are periodically ice covered were refined. In addition, new methods using PIESs for detecting icebergs and sea ice and for estimating iceberg drafts and drift speeds were developed and tested. During winter months, the PIES in Sermilik Fjord logged about 300 iceberg detections and recorded a 2-week period in early March of land-fast ice cover over the instrument site, consistent with satellite synthetic aperture radar (SAR) imagery. The deepest icebergs in the fjord were found to have keel depths greater than approximately 350 m. Average and maximum iceberg speeds were approximately 0.2 and 0.5 m s−1, respectively. The maximum tidal range at the site was ±1.8 m and during neap tides the range was ±0.3 m, as shown by the PIES’s pressure record.
    Description: This work was supported by the National Science Foundation through the Divisions of Ocean Science and Polar Programs under Grant PLR-1332911. A. Silvano was supported as a WHOI guest student through a Gori Fellowship.
    Keywords: Glaciers ; Sea ice ; Ice thickness ; Data processing ; In situ oceanic observations ; Instrumentation/sensors
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  • 32
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 1735–1756, doi:10.1175/JPO-D-14-0238.1.
    Description: The Lofoten basin of the Nordic Seas is recognized as a crucial component of the meridional overturning circulation in the North Atlantic because of the large horizontal extent of Atlantic Water and winter surface buoyancy loss. In this study, hydrographic and current measurements collected from a mooring deployed in the Lofoten basin from July 2010 to September 2012 are used to describe water mass transformation and the mesoscale eddy field. Winter mixed layer depths (MLDs) are observed to reach approximately 400 m, with larger MLDs and denser properties resulting from the colder 2010 winter. A heat budget of the upper water column requires lateral input, which balances the net annual heat loss of ~80 W m−2. The lateral flux is a result of mesoscale eddies, which dominate the velocity variability. Eddy velocities are enhanced in the upper 1000 m, with a barotropic component that reaches the bottom. Detailed examination of two eddies, from April and August 2012, highlights the variability of the eddy field and eddy properties. Temperature and salinity properties of the April eddy suggest that it originated from the slope current but was ventilated by surface fluxes. The properties within the eddy were similar to those of the mode water, indicating that convection within the eddies may make an important contribution to water mass transformation. A rough estimate of eddy flux per unit boundary current length suggests that fluxes in the Lofoten basin are larger than in the Labrador Sea because of the enhanced boundary current–interior density difference.
    Description: The work was supported by NSF OCE 0850416.
    Description: 2015-12-01
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Boundary currents ; Eddies ; Fluxes ; Mesoscale processes ; Atm/Ocean Structure/ Phenomena ; Thermohaline circulation
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  • 33
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 4653–4687, doi:10.1175/JCLI-D-13-00326.1.
    Description: Downscaled climate model projections from phase 5 of the Coupled Model Intercomparison Project (CMIP5) were used to force a dynamic vegetation agricultural model (Agro-IBIS) and simulate yield responses to historical climate and two future emissions scenarios for maize in the U.S. Midwest and wheat in southeastern Australia. In addition to mean changes in yield, the frequency of high- and low-yield years was related to changing local hydroclimatic conditions. Particular emphasis was on the seasonal cycle of climatic variables during extreme-yield years and links to crop growth. While historically high (low) yields in Iowa tend to occur during years with anomalous wet (dry) growing season, this is exacerbated in the future. By the end of the twenty-first century, the multimodel mean (MMM) of growing season temperatures in Iowa is projected to increase by more than 5°C, and maize yield is projected to decrease by 18%. For southeastern Australia, the frequency of low-yield years rises dramatically in the twenty-first century because of significant projected drying during the growing season. By the late twenty-first century, MMM growing season precipitation in southeastern Australia is projected to decrease by 15%, temperatures are projected to increase by 2.8°–4.5°C, and wheat yields are projected to decline by 70%. Results highlight the sensitivity of yield projections to the nature of hydroclimatic changes. Where future changes are uncertain, the sign of the yield change simulated by Agro-IBIS is uncertain as well. In contrast, broad agreement in projected drying over southern Australia across models is reflected in consistent yield decreases for the twenty-first century. Climatic changes of the order projected can be expected to pose serious challenges for continued staple grain production in some current centers of production, especially in marginal areas.
    Description: This work was initiated at the Dissertations Initiative for the Advancement of Climate Change Research (DISCCRS) V Symposium, supported by the U.S. National Science Foundation through collaborative Grants SES-0932916 and SES-0931402. CCU was supported by a University of New South Wales Vice-Chancellor Fellowship and the Penzance Endowed Fund and John P. Chase Memorial Endowed Fund at WHOI. TET was supported by the U.S. Department of Energy Award DE-EE0004397. NC was funded by NSF Grant EAR-1204774. We are indebted to the FORMAS-funded Land Use Today and Tomorrow (LUsTT) project (Grant 211-2009-1682) for financial support.
    Keywords: Australia ; North America ; Climate change ; Climate models ; Climate variability ; Agriculture
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  • 34
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 921–938, doi:10.1175/BAMS-D-13-00117.1.
    Description: El Niño–Southern Oscillation (ENSO) is a naturally occurring mode of tropical Pacific variability, with global impacts on society and natural ecosystems. While it has long been known that El Niño events display a diverse range of amplitudes, triggers, spatial patterns, and life cycles, the realization that ENSO’s impacts can be highly sensitive to this event-to-event diversity is driving a renewed interest in the subject. This paper surveys our current state of knowledge of ENSO diversity, identifies key gaps in understanding, and outlines some promising future research directions.
    Description: AC acknowledges support from the National Science Foundation for this study.
    Description: 2015-12-01
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  • 35
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2381–2406, doi:10.1175/JPO-D-14-0086.1.
    Description: While near-inertial waves are known to be generated by atmospheric storms, recent observations in the Kuroshio Front find intense near-inertial internal-wave shear along sloping isopycnals, even during calm weather. Recent literature suggests that spontaneous generation of near-inertial waves by frontal instabilities could represent a major sink for the subinertial quasigeostrophic circulation. An unforced three-dimensional 1-km-resolution model, initialized with the observed cross-Kuroshio structure, is used to explore this mechanism. After several weeks, the model exhibits growth of 10–100-km-scale frontal meanders, accompanied by O(10) mW m−2 spontaneous generation of near-inertial waves associated with readjustment of submesoscale fronts forced out of balance by mesoscale confluent flows. These waves have properties resembling those in the observations. However, they are reabsorbed into the model Kuroshio Front with no more than 15% dissipating or radiating away. Thus, spontaneous generation of near-inertial waves represents a redistribution of quasigeostrophic energy rather than a significant sink.
    Description: “The Study of Kuroshio Ecosystem Dynamics for Sustainable Fisheries (SKED)” supported by MEXT, MIT-Hayashi Seed Fund, ONR (Awards N000140910196 and N000141210101), NSF (Award OCE 0928617, 0928138) for support.
    Description: 2016-03-01
    Keywords: Circulation/ Dynamics ; Frontogenesis/frontolysis ; Fronts ; Internal waves ; Turbulence ; Upwelling/downwelling ; Atm/Ocean Structure/ Phenomena ; Jets
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  • 36
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 7659–7677, doi:10.1175/JCLI-D-15-0007.1.
    Description: Maximum covariance analysis of a preindustrial control simulation of the NCAR Community Climate System Model, version 4 (CCSM4), shows that a barotropic signal in winter broadly resembling a negative phase of the North Atlantic Oscillation (NAO) follows an intensification of the Atlantic meridional overturning circulation (AMOC) by about 7 yr. The delay is due to the cyclonic propagation along the North Atlantic Current (NAC) and the subpolar gyre of a SST warming linked to a northward shift and intensification of the NAC, together with an increasing SST cooling linked to increasing southward advection of subpolar water along the western boundary and a southward shift of the Gulf Stream (GS). These changes result in a meridional SST dipole, which follows the AMOC intensification after 6 or 7 yr. The SST changes were initiated by the strengthening of the western subpolar gyre and by bottom torque at the crossover of the deep branches of the AMOC with the NAC on the western flank of the Mid-Atlantic Ridge and the GS near the Tail of the Grand Banks, respectively. The heat flux damping of the SST dipole shifts the region of maximum atmospheric transient eddy growth southward, leading to a negative NAO-like response. No significant atmospheric response is found to the Atlantic multidecadal oscillation (AMO), which is broadly realistic but shifted south and associated with a much weaker meridional SST gradient than the AMOC fingerprint. Nonetheless, the wintertime atmospheric response to the AMOC shows some similarity with the observed response to the AMO, suggesting that the ocean–atmosphere interactions are broadly realistic in CCSM4.
    Description: Support from the NOAA Climate Program Office (NA10OAR4310202 and NA13OAR4310139), NSF EaSM2 (OCE 1242989) and the European Community 7th framework programme (FP7 2007-2013) under Grant Agreement 308299 (NACLIM) is gratefully acknowledged. The analysis benefited from the IPSL Prodiguer-Ciclad facility, which is supported by CNRS, UPMC, Labex L-IPSL funded by the ANR (Grant ANR-10-LABX-0018) and by the European FP7 IS-ENES2 project (Grant 312979).
    Description: 2016-04-01
    Keywords: Meridional overturning circulation ; North Atlantic Oscillation ; Climate models ; Climate variability
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  • 37
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 32 (2015): 1945–1959, doi:10.1175/JTECH-D-14-00222.1.
    Description: Observations of waves and setup on a steep, sandy beach are used to identify and assess potential applications of spatially dense lidar measurements for studying inner-surf and swash-zone hydrodynamics. There is good agreement between lidar- and pressure-based estimates of water levels (r2 = 0.98, rmse = 0.05 m), setup (r2 = 0.92, rmse = 0.03 m), infragravity wave heights (r2 = 0.91, rmse = 0.03 m), swell–sea wave heights (r2 = 0.87, rmse = 0.07 m), and energy density spectra. Lidar observations did not degrade with range (up to 65 m offshore of the lidar) when there was sufficient foam present on the water surface to generate returns, suggesting that for narrow-beam 1550-nm light, spatially varying spot size, grazing angle affects, and linear interpolation (to estimate the water surface over areas without returns) are not large sources of error. Consistent with prior studies, the lidar and pressure observations indicate that standing infragravity waves dominate inner-surf and swash energy at low frequencies and progressive swell–sea waves dominate at higher frequencies. The spatially dense lidar measurements enable estimates of reflection coefficients from pairs of locations at a range of spatial lags (thus spanning a wide range of frequencies or wavelengths). Reflection is high at low frequencies, increases with beach slope, and decreases with increasing offshore wave height, consistent with prior studies. Lidar data also indicate that wave asymmetry increases rapidly across the inner surf and swash. The comparisons with pressure measurements and with theory demonstrate that lidar measures inner-surf waves and setup accurately, and can be used for studies of inner-surf and swash-zone hydrodynamics.
    Description: Funding was provided by the USACE Coastal Field Data Collection (CFDC) and Coastal Ocean Data Systems (CODS) programs, the Office of Naval Research, the National Science Foundation, and the Assistant Secretary of Defense (R&E).
    Description: 2016-04-01
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  • 38
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2497–2521, doi:10.1175/JPO-D-14-0128.1.
    Description: Oceanic density overturns are commonly used to parameterize the dissipation rate of turbulent kinetic energy. This method assumes a linear scaling between the Thorpe length scale LT and the Ozmidov length scale LO. Historic evidence supporting LT ~ LO has been shown for relatively weak shear-driven turbulence of the thermocline; however, little support for the method exists in regions of turbulence driven by the convective collapse of topographically influenced overturns that are large by open-ocean standards. This study presents a direct comparison of LT and LO, using vertical profiles of temperature and microstructure shear collected in the Luzon Strait—a site characterized by topographically influenced overturns up to O(100) m in scale. The comparison is also done for open-ocean sites in the Brazil basin and North Atlantic where overturns are generally smaller and due to different processes. A key result is that LT/LO increases with overturn size in a fashion similar to that observed in numerical studies of Kelvin–Helmholtz (K–H) instabilities for all sites but is most clear in data from the Luzon Strait. Resultant bias in parameterized dissipation is mitigated by ensemble averaging; however, a positive bias appears when instantaneous observations are depth and time integrated. For a series of profiles taken during a spring tidal period in the Luzon Strait, the integrated value is nearly an order of magnitude larger than that based on the microstructure observations. Physical arguments supporting LT ~ LO are revisited, and conceptual regimes explaining the relationship between LT/LO and a nondimensional overturn size are proposed. In a companion paper, Scotti obtains similar conclusions from energetics arguments and simulations.
    Description: B.D.M. and S.K.V. gratefully acknowledge the support of the Office of Naval Research under Grants N00014-12-1-0279, N00014-12-1-0282, and N00014-12-1-0938 (Program Manager: Dr. Terri Paluszkiewicz). S.K.V. also acknowledges support of the National Science Foundation under Grant OCE-1151838. L.S.L. acknowledges support for BBTRE by the National Science Foundation by Contract OCE94-15589 and NATRE and IWISE by the Office of Naval Research by Contracts N00014-92-1323 and N00014-10-10315. J.N.M. was supported through Grant 1256620 from the National Science Foundation and the Office of Naval Research (IWISE Project).
    Description: 2016-04-01
    Keywords: Circulation/ Dynamics ; Diapycnal mixing ; Small scale processes ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Mixing ; Observational techniques and algorithms ; Profilers, oceanic ; Models and modeling ; Parameterization
    Repository Name: Woods Hole Open Access Server
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  • 39
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2621–2639, doi:10.1175/JPO-D-14-0239.1.
    Description: Measurements made as part of a large-scale experiment to examine wind-driven circulation and mixing in Chesapeake Bay demonstrate that circulations consistent with Langmuir circulation play an important role in surface boundary layer dynamics. Under conditions when the turbulent Langmuir number Lat is low (〈0.5), the surface mixed layer is characterized by 1) elevated vertical turbulent kinetic energy; 2) decreased anisotropy; 3) negative vertical velocity skewness indicative of strong/narrow downwelling and weak/broad upwelling; and 4) strong negative correlations between low-frequency vertical velocity and the velocity in the direction of wave propagation. These characteristics appear to be primarily the result of the vortex force associated with the surface wave field, but convection driven by a destabilizing heat flux is observed and appears to contribute significantly to the observed negative vertical velocity skewness. Conditions that favor convection usually also have strong Langmuir forcing, and these two processes probably both contribute to the surface mixed layer turbulence. Conditions in which traditional stress-driven turbulence is important are limited in this dataset. Unlike other shallow coastal systems where full water column Langmuir circulation has been observed, the salinity stratification in Chesapeake Bay is nearly always strong enough to prevent full-depth circulation from developing.
    Description: The funding for this research was provided by the National Science Foundation Grants OCE-1339032 and OCE-1338518.
    Description: 2016-04-01
    Keywords: Circulation/ Dynamics ; Convection ; Instability ; Mixing ; Turbulence ; Wave breaking ; Wind stress
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  • 40
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    American Meteorological Society
    In:  EPIC3Monthly Weather Review, American Meteorological Society, 143, pp. 1554-1567, ISSN: 0027-0644
    Publication Date: 2019-07-17
    Description: Ensemble square root filters can either assimilate all observations that are available at a given time at once, or assimilate the observations in batches or one at a time. For large-scale models, the filters are typically applied with a localized analysis step. This study demonstrates that the interaction of serial observation processing and localization can destabilize the analysis process and examines under which conditions the instability becomes significant. The instability results from a repeated inconsistent update of the state error covariance matrix that is caused by the localization. The inconsistency is present in all ensemble Kalman filters, except the classical ensemble Kalman filter with perturbed observations. With serial observation processing, its effect is small in cases when the assimilation changes the ensemble of model states only slightly. However, when the assimilation has a strong effect on the state estimates, the interaction of localization and serial observation processing can significantly deteriorate the filter performance. In realistic large-scale applications, when the assimilation changes the states only slightly and when the distribution of the observations is irregular and changing over time, the instability is likely not significant.
    Repository Name: EPIC Alfred Wegener Institut
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  • 41
    Publication Date: 2021-11-09
    Description: Ensembles of retrospective 2-month dynamical forecasts initiated on 1May are used to predict the onset of the Indian summer monsoon (ISM) for the period 1989–2005. The subseasonal predictions (SSPs) are based on a coupled general circulation model and recently they have been upgraded by the realistic initialization of the atmosphere with initial conditions taken from reanalysis. Two objective large-scale methods based on dynamical circulation and hydrological indices are applied to detect the ISM onset. The SSPs show some skill in forecasting earlier-than-normal ISM onsets, while they have difficulty in predicting late onsets. It is shown that significant contribution to the skill in forecasting early ISM onsets comes from the newly developed initialization of the atmosphere from reanalysis. On one hand, atmospheric initialization produces a better representation of the atmospheric mean state in the initial conditions, leading to a systematically improved monsoon onset sequence. On the other hand, the initialization of the atmosphere allows some skill in forecasting the northward propagating intraseasonal wind and precipitation anomalies over the tropical Indian Ocean. The northward propagating intraseasonal modes trigger the monsoon in some early-onset years. The realistic phase initialization of these modes improves the forecasts of the associated earlier-than-normal monsoon onsets. The prediction of late onsets is not noticeably improved by the initialization of the atmosphere. It is suggested that late onsets of the monsoon are too far away from the start date of the forecasts to conserve enough memory of the intraseasonal oscillation (ISO) anomalies and of the improved representation of the mean state in the initial conditions.
    Description: Published
    Description: 778-793
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: indian summer monsoon ; onset ; seasonal predictions ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate ; 01. Atmosphere::01.01. Atmosphere::01.01.04. Processes and Dynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 42
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 143 (2015): 195–211, doi:10.1175/MWR-D-14-00051.1.
    Description: Lagrangian measurements from passive ocean instruments provide a useful source of data for estimating and forecasting the ocean’s state (velocity field, salinity field, etc.). However, trajectories from these instruments are often highly nonlinear, leading to difficulties with widely used data assimilation algorithms such as the ensemble Kalman filter (EnKF). Additionally, the velocity field is often modeled as a high-dimensional variable, which precludes the use of more accurate methods such as the particle filter (PF). Here, a hybrid particle–ensemble Kalman filter is developed that applies the EnKF update to the potentially high-dimensional velocity variables, and the PF update to the relatively low-dimensional, highly nonlinear drifter position variable. This algorithm is tested with twin experiments on the linear shallow water equations. In experiments with infrequent observations, the hybrid filter consistently outperformed the EnKF, both by better capturing the Bayesian posterior and by better tracking the truth.
    Description: The work of Apte benefited from the support of the AIRBUS Group Corporate Foundation Chair in Mathematics of Complex Systems established in ICTS-TIFR. Spiller would like to acknowledge support by NSF Grant DMS-1228265 and ONR Grant N00014-11-1-0087. Sandstede gratefully acknowledges support by the NSF through Grant DMS-0907904. Slivinski was supported by the NSF through Grants DMS-0907904 and DMS-1148284.
    Description: 2015-07-01
    Keywords: Bayesian methods ; Filtering techniques ; Kalman filters ; Statistical techniques ; Data assimilation
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  • 43
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    Unknown
    American Meteorological Society
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 31 (2014): 2871, doi:10.1175/JTECH-D-14-00187.1.
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  • 44
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 778–791, doi:10.1175/JPO-D-14-0164.1.
    Description: This study examines anisotropic transport properties of the eddying North Atlantic flow, using an idealized model of the double-gyre oceanic circulation and altimetry-derived velocities. The material transport by the time-dependent flow (quantified by the eddy diffusivity tensor) varies geographically and is anisotropic, that is, it has a well-defined direction of the maximum transport. One component of the time-dependent flow, zonally elongated large-scale transients, is particularly important for the anisotropy, as it corresponds to primarily zonal material transport and long correlation time scales. The importance of these large-scale zonal transients in the material distribution is further confirmed with simulations of idealized color dye tracers, which has implications for parameterizations of the eddy transport in non-eddy-resolving models.
    Description: IK would like to acknowledge support through the NSF Grant OCE-1154923. IR was supported by the NSF OCE-1154641 and NASA Grant NNX14AH29G.
    Description: 2015-09-01
    Keywords: Circulation/ Dynamics ; Eddies ; Lagrangian circulation/transport ; Mesoscale processes ; Ocean circulation ; Models and modeling ; Tracers
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  • 45
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 8289–8318, doi:10.1175/JCLI-D-14-00555.1.
    Description: This study quantifies mean annual and monthly fluxes of Earth’s water cycle over continents and ocean basins during the first decade of the millennium. To the extent possible, the flux estimates are based on satellite measurements first and data-integrating models second. A careful accounting of uncertainty in the estimates is included. It is applied within a routine that enforces multiple water and energy budget constraints simultaneously in a variational framework in order to produce objectively determined optimized flux estimates. In the majority of cases, the observed annual surface and atmospheric water budgets over the continents and oceans close with much less than 10% residual. Observed residuals and optimized uncertainty estimates are considerably larger for monthly surface and atmospheric water budget closure, often nearing or exceeding 20% in North America, Eurasia, Australia and neighboring islands, and the Arctic and South Atlantic Oceans. The residuals in South America and Africa tend to be smaller, possibly because cold land processes are negligible. Fluxes were poorly observed over the Arctic Ocean, certain seas, Antarctica, and the Australasian and Indonesian islands, leading to reliance on atmospheric analysis estimates. Many of the satellite systems that contributed data have been or will soon be lost or replaced. Models that integrate ground-based and remote observations will be critical for ameliorating gaps and discontinuities in the data records caused by these transitions. Continued development of such models is essential for maximizing the value of the observations. Next-generation observing systems are the best hope for significantly improving global water budget accounting.
    Description: This research was funded by multiple grants from NASA’s Energy and Water Cycle Study (NEWS) program.
    Description: 2016-05-01
    Keywords: Physical Meteorology and Climatology ; Water budget ; Observational techniques and algorithms ; Remote sensing ; Mathematical and statistical techniques ; Numerical analysis/modeling
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  • 46
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 1257–1279, doi:10.1175/BAMS-D-14-00015.1.
    Description: Lateral stirring is a basic oceanographic phenomenon affecting the distribution of physical, chemical, and biological fields. Eddy stirring at scales on the order of 100 km (the mesoscale) is fairly well understood and explicitly represented in modern eddy-resolving numerical models of global ocean circulation. The same cannot be said for smaller-scale stirring processes. Here, the authors describe a major oceanographic field experiment aimed at observing and understanding the processes responsible for stirring at scales of 0.1–10 km. Stirring processes of varying intensity were studied in the Sargasso Sea eddy field approximately 250 km southeast of Cape Hatteras. Lateral variability of water-mass properties, the distribution of microscale turbulence, and the evolution of several patches of inert dye were studied with an array of shipboard, autonomous, and airborne instruments. Observations were made at two sites, characterized by weak and moderate background mesoscale straining, to contrast different regimes of lateral stirring. Analyses to date suggest that, in both cases, the lateral dispersion of natural and deliberately released tracers was O(1) m2 s–1 as found elsewhere, which is faster than might be expected from traditional shear dispersion by persistent mesoscale flow and linear internal waves. These findings point to the possible importance of kilometer-scale stirring by submesoscale eddies and nonlinear internal-wave processes or the need to modify the traditional shear-dispersion paradigm to include higher-order effects. A unique aspect of the Scalable Lateral Mixing and Coherent Turbulence (LatMix) field experiment is the combination of direct measurements of dye dispersion with the concurrent multiscale hydrographic and turbulence observations, enabling evaluation of the underlying mechanisms responsible for the observed dispersion at a new level.
    Description: The bulk of this work was funded under the Scalable Lateral Mixing and Coherent Turbulence Departmental Research Initiative and the Physical Oceanography Program. The dye experiments were supported jointly by the Office of Naval Research and the National Science Foundation Physical Oceanography Program (Grants OCE-0751653 and OCE-0751734).
    Description: 2016-02-01
    Repository Name: Woods Hole Open Access Server
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  • 47
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 28 (2015): 8319-8346, doi:10.1175/JCLI-D-14-00556.1.
    Description: New objectively balanced observation-based reconstructions of global and continental energy budgets and their seasonal variability are presented that span the golden decade of Earth-observing satellites at the start of the twenty-first century. In the absence of balance constraints, various combinations of modern flux datasets reveal that current estimates of net radiation into Earth’s surface exceed corresponding turbulent heat fluxes by 13–24 W m−2. The largest imbalances occur over oceanic regions where the component algorithms operate independent of closure constraints. Recent uncertainty assessments suggest that these imbalances fall within anticipated error bounds for each dataset, but the systematic nature of required adjustments across different regions confirm the existence of biases in the component fluxes. To reintroduce energy and water cycle closure information lost in the development of independent flux datasets, a variational method is introduced that explicitly accounts for the relative accuracies in all component fluxes. Applying the technique to a 10-yr record of satellite observations yields new energy budget estimates that simultaneously satisfy all energy and water cycle balance constraints. Globally, 180 W m−2 of atmospheric longwave cooling is balanced by 74 W m−2 of shortwave absorption and 106 W m−2 of latent and sensible heat release. At the surface, 106 W m−2 of downwelling radiation is balanced by turbulent heat transfer to within a residual heat flux into the oceans of 0.45 W m−2, consistent with recent observations of changes in ocean heat content. Annual mean energy budgets and their seasonal cycles for each of seven continents and nine ocean basins are also presented.
    Description: This study is the result of a collaboration of multiple investigators each supported by the NEWS program.
    Keywords: Climatology ; Energy budget/balance ; Heat budgets/fluxes ; Radiative fluxes ; Surface fluxes ; Satellite observations
    Repository Name: Woods Hole Open Access Server
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  • 48
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 27 (2014): 9359–9376, doi:10.1175/JCLI-D-14-00228.1.
    Description: Multidecadal variability of the Atlantic meridional overturning circulation (AMOC) is examined based on a comparison of the AMOC streamfunctions in depth and in density space, in a 700-yr present-day control integration of the fully coupled Community Climate System Model, version 3. The commonly used depth-coordinate AMOC primarily exhibits the variability associated with the deep equatorward transport that follows the changes in the Labrador Sea deep water formation. On the other hand, the density-based AMOC emphasizes the variability associated with the subpolar gyre circulation in the upper ocean leading to the changes in the Labrador Sea convection. Combining the two representations indicates that the ~20-yr periodicity of the AMOC variability in the first half of the simulation is primarily due to an ocean-only mode resulting from the coupling of the deep equatorward flow and the upper ocean gyre circulation near the Gulf Stream and North Atlantic Current. In addition, the density-based AMOC reveals a gradual change in the deep ocean associated with cooling and increased density, which is likely responsible for the transition of AMOC variability from strong ~20-yr oscillations to a weaker red noise–like multidecadal variability.
    Description: Support from the NOAA Climate Program Office (Grant NA10OAR4310202 and NA13OAR4310139) and NSF EaSM2 (OCE1242989) is gratefully acknowledged.
    Description: 2015-06-15
    Keywords: North Atlantic Ocean ; Meridional overturning circulation ; Ocean circulation ; Thermocline circulation ; Climate variability ; Multidecadal variability
    Repository Name: Woods Hole Open Access Server
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  • 49
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 27 (2014): 8981–9005, doi:10.1175/JCLI-D-12-00565.1.
    Description: Version 1 of the Community Earth System Model, in the configuration where its full carbon cycle is enabled, is introduced and documented. In this configuration, the terrestrial biogeochemical model, which includes carbon–nitrogen dynamics and is present in earlier model versions, is coupled to an ocean biogeochemical model and atmospheric CO2 tracers. The authors provide a description of the model, detail how preindustrial-control and twentieth-century experiments were initialized and forced, and examine the behavior of the carbon cycle in those experiments. They examine how sea- and land-to-air CO2 fluxes contribute to the increase of atmospheric CO2 in the twentieth century, analyze how atmospheric CO2 and its surface fluxes vary on interannual time scales, including how they respond to ENSO, and describe the seasonal cycle of atmospheric CO2 and its surface fluxes. While the model broadly reproduces observed aspects of the carbon cycle, there are several notable biases, including having too large of an increase in atmospheric CO2 over the twentieth century and too small of a seasonal cycle of atmospheric CO2 in the Northern Hemisphere. The biases are related to a weak response of the carbon cycle to climatic variations on interannual and seasonal time scales and to twentieth-century anthropogenic forcings, including rising CO2, land-use change, and atmospheric deposition of nitrogen.
    Description: The CESM project is supported by the National Science Foundation and the Office of Science (BER) of the U.S. Department of Energy. Computing resources were provided by the Climate Simulation Laboratory at NCAR’s Computational and Information Systems Laboratory (CISL), sponsored by the National Science Foundation and other agencies. This research was enabled by CISL compute and storage resources. SCD acknowledges support from the National Science Foundation (NSF AGS-1048827). This research is supported in part by the U.S. Department of Energy (DOE), Office of Science, Biological and Environmental Research. Oak Ridge National Laboratory is managed by UT-BATTELLE for DOE under contract DE-AC05-00OR22725.
    Description: 2015-06-15
    Keywords: Carbon cycle ; Climate models ; Coupled models ; Model evaluation/performance
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  • 50
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 294–312, doi:10.1175/JPO-D-14-0104.1.
    Description: Model analyses of an alongshelf flow over a continental shelf and slope reveal upwelling near the shelf break. A stratified, initially uniform, alongshelf flow undergoes a rapid adjustment with notable differences onshore and offshore of the shelf break. Over the shelf, a bottom boundary layer and an offshore bottom Ekman transport develop within an inertial period. Over the slope, the bottom offshore transport is reduced from the shelf’s bottom transport by two processes. First, advection of buoyancy downslope induces vertical mixing, destratifying, and thickening the bottom boundary layer. The downward-tilting isopycnals reduce the geostrophic speed near the bottom. The reduced bottom stress weakens the offshore Ekman transport, a process known as buoyancy shutdown of the Ekman transport. Second, the thickening bottom boundary layer and weakening near-bottom speeds are balanced by an upslope ageostrophic transport. The convergence in the bottom transport induces adiabatic upwelling offshore of the shelf break. For a time period after the initial adjustment, scalings are identified for the upwelling speed and the length scale over which it occurs. Numerical experiments are used to test the scalings for a range of initial speeds and stratifications. Upwelling occurs within an inertial period, reaching values of up to 10 m day−1 within 2 to 7 km offshore of the shelf break. Upwelling drives an interior secondary circulation that accelerates the alongshelf flow over the slope, forming a shelfbreak jet. The model results are compared with upwelling estimates from other models and observations near the Middle Atlantic Bight shelf break.
    Description: J. Benthuysen acknowledges support from the ARC Centre of Excellence for Climate System Science (CE110001028) and the MIT/WHOI Joint Program, where this work was initiated.
    Description: 2015-07-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Diapycnal mixing ; Ekman pumping/transport ; Mixing ; Topographic effects ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
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  • 51
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 104–132, doi:10.1175/JPO-D-14-0032.1.
    Description: Three mechanisms for self-induced Ekman pumping in the interiors of mesoscale ocean eddies are investigated. The first arises from the surface stress that occurs because of differences between surface wind and ocean velocities, resulting in Ekman upwelling and downwelling in the cores of anticyclones and cyclones, respectively. The second mechanism arises from the interaction of the surface stress with the surface current vorticity gradient, resulting in dipoles of Ekman upwelling and downwelling. The third mechanism arises from eddy-induced spatial variability of sea surface temperature (SST), which generates a curl of the stress and therefore Ekman pumping in regions of crosswind SST gradients. The spatial structures and relative magnitudes of the three contributions to eddy-induced Ekman pumping are investigated by collocating satellite-based measurements of SST, geostrophic velocity, and surface winds to the interiors of eddies identified from their sea surface height signatures. On average, eddy-induced Ekman pumping velocities approach O(10) cm day−1. SST-induced Ekman pumping is usually secondary to the two current-induced mechanisms for Ekman pumping. Notable exceptions are the midlatitude extensions of western boundary currents and the Antarctic Circumpolar Current, where SST gradients are strong and all three mechanisms for eddy-induced Ekman pumping are comparable in magnitude. Because the polarity of current-induced curl of the surface stress opposes that of the eddy, the associated Ekman pumping attenuates the eddies. The decay time scale of this attenuation is proportional to the vertical scale of the eddy and inversely proportional to the wind speed. For typical values of these parameters, the decay time scale is about 1.3 yr.
    Description: This work was funded by NASA Grants NNX08AI80G, NNX08AR37G, NNX13AD78G, NNX10AE91G, NNX13AE47G, and NNX10AO98G.
    Description: 2015-07-01
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Eddies ; Ekman pumping/transport ; Atm/Ocean Structure/ Phenomena ; Eddies ; Ekman pumping ; Observational techniques and algorithms ; Satellite observations
    Repository Name: Woods Hole Open Access Server
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  • 52
    Publication Date: 2023-09-22
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 53
    Publication Date: 2015-02-26
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 54
    Publication Date: 2015-08-12
    Description: Article How variation in species responses to climate may influence the resilience of ecological communities to environmental change is not fully understood. Here, the authors characterize the thermal niches of insect pollinator communities and show that resilience increases along a gradient of land-use intensity. Nature Communications doi: 10.1038/ncomms8989 Authors: Sara Kühsel, Nico Blüthgen
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 55
    Publication Date: 2015-08-12
    Description: Article Sepsis, a systemic inflammatory response to bacterial infection, can lead to organ failure and death. Here, Chai et al. investigate the mechanisms behind the septic response and identify the role of oestrogen sulfotransferase in this process in mice. Nature Communications doi: 10.1038/ncomms8979 Authors: Xiaojuan Chai, Yan Guo, Mengxi Jiang, Bingfang Hu, Zhigang Li, Jie Fan, Meihong Deng, Timothy R. Billiar, Heidi R. Kucera, Nilesh W. Gaikwad, Meishu Xu, Peipei Lu, Jiong Yan, Haiyan Fu, Youhua Liu, Lushan Yu, Min Huang, Su Zeng, Wen Xie
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 56
    Publication Date: 2015-08-12
    Description: Article Antisense oligonucleotides (ASOs) can repress the expression of specific genes. Here, the authors show that a DNA/RNA heteroduplex oligonucleotide (HDO) with a structure different from ASOs is more potent in suppressing target gene expression, and causes a less adverse effect in mouse liver. Nature Communications doi: 10.1038/ncomms8969 Authors: Kazutaka Nishina, Wenying Piao, Kie Yoshida-Tanaka, Yumiko Sujino, Tomoko Nishina, Tsuyoshi Yamamoto, Keiko Nitta, Kotaro Yoshioka, Hiroya Kuwahara, Hidenori Yasuhara, Takeshi Baba, Fumiko Ono, Kanjiro Miyata, Koichi Miyake, Punit P. Seth, Audrey Low, Masayuki Yoshida, C. Frank Bennett, Kazunori Kataoka, Hidehiro Mizusawa, Satoshi Obika, Takanori Yokota
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 57
    Publication Date: 2015-08-12
    Description: Article Mycobacterium tuberculosis feeds on host fatty acids during infection, a process that requires a fructose bisphosphatase (FBPase) enzyme for gluconeogenesis. Here, Ganapathy et al. show that the bacterium has two different FBPases and that this enzymatic activity is required for full virulence. Nature Communications doi: 10.1038/ncomms8912 Authors: Uday Ganapathy, Joeli Marrero, Susannah Calhoun, Hyungjin Eoh, Luiz Pedro Sorio de Carvalho, Kyu Rhee, Sabine Ehrt
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 58
    Publication Date: 2015-08-12
    Description: Article The regulatory subunits (RI) of protein kinase A (PKA) form a disulfide bond in response to cellular hydrogen peroxide. Here the authors show that disulfide-activation of PKARIa regulates VEGF-induced angiogenesis in mice and may represent a new therapeutic target in diseases with abnormal angiogenesis. Nature Communications doi: 10.1038/ncomms8920 Authors: Joseph R. Burgoyne, Olena Rudyk, Hyun-ju Cho, Oleksandra Prysyazhna, Natasha Hathaway, Amanda Weeks, Rachel Evans, Tony Ng, Katrin Schröder, Ralf P. Brandes, Ajay M. Shah, Philip Eaton
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 59
    Publication Date: 2015-08-09
    Description: Article It has been conjectured that not only states but also quantum operations can be placed in a superposition of causal order. Here, the authors use a qubit superpose the order in which two photonic gates are applied, which is shown to enable a more efficient detection of their commutation relations. Nature Communications doi: 10.1038/ncomms8913 Authors: Lorenzo M. Procopio, Amir Moqanaki, Mateus Araújo, Fabio Costa, Irati Alonso Calafell, Emma G. Dowd, Deny R. Hamel, Lee A. Rozema, Časlav Brukner, Philip Walther
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 60
    Publication Date: 2015-08-09
    Description: Article The confined surface plasmon-polariton modes in plasmonic waveguides are a promising platform for single-photon manipulation in small, coplanar architectures. Here, Bermúdez Ureña et al . demonstrate efficient coupling of a single quantum emitter to the supported modes of a V-groove plasmonic waveguide. Nature Communications doi: 10.1038/ncomms8883 Authors: Esteban Bermúdez-Ureña, Carlos Gonzalez-Ballestero, Michael Geiselmann, Renaud Marty, Ilya P. Radko, Tobias Holmgaard, Yury Alaverdyan, Esteban Moreno, Francisco J. García-Vidal, Sergey I. Bozhevolnyi, Romain Quidant
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 61
    Publication Date: 2015-08-09
    Description: Article Helical nanofilaments—composed of achiral, bent core molecules—have been shown to assemble into left- and right-handed structures. Here, the authors show diastereomeric interactions on the mesocale between chiral liquid crystal guest compounds and helical nanofilament-based pores. Nature Communications doi: 10.1038/ncomms8763 Authors: Dong Chen, Michael R. Tuchband, Balazs Horanyi, Eva Korblova, David M. Walba, Matthew A. Glaser, Joseph E. Maclennan, Noel A. Clark
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 62
    Publication Date: 2015-08-09
    Description: Article Exploring magnetic excitations and spin textures on the nanoscale may lead to new spintronic technologies and new understanding of condensed matter. Here, the authors demonstrate the potential of single-electron spins in diamond to image such excitations by characterizing spin waves in a ferromagnetic microdisc. Nature Communications doi: 10.1038/ncomms8886 Authors: Toeno van der Sar, Francesco Casola, Ronald Walsworth, Amir Yacoby
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 63
    Publication Date: 2015-08-09
    Description: Article The impact of drops on surfaces is highly relevant to our daily life and many industrial applications, such as self-cleaning and ink printing. Here, Hao et al . show the transition from superhydrophobic-like drop bouncing, due to a trapped air layer, to substrate-dependent bouncing on a liquid thin film. Nature Communications doi: 10.1038/ncomms8986 Authors: Chonglei Hao, Jing Li, Yuan Liu, Xiaofeng Zhou, Yahua Liu, Rong Liu, Lufeng Che, Wenzhong Zhou, Dong Sun, Lawrence Li, Lei Xu, Zuankai Wang
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 64
    Publication Date: 2015-08-13
    Description: Article Individual-nucleotide resolution crosslinking and immunoprecipitation (iCLIP) can map RNA binding sites of RNA-binding proteins (RBPs). Here, the authors report an analysis tool that improves the binding site assignment for some RBPs that have length-dependent broader distribution for their iCLIP fragments. Nature Communications doi: 10.1038/ncomms8921 Authors: Christian Hauer, Tomaz Curk, Simon Anders, Thomas Schwarzl, Anne-Marie Alleaume, Jana Sieber, Ina Hollerer, Madhuri Bhuvanagiri, Wolfgang Huber, Matthias W. Hentze, Andreas E. Kulozik
    Electronic ISSN: 2041-1723
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  • 65
    Publication Date: 2015-08-13
    Description: Article Pathological neovascularization causes blinding eye disease. Here the authors show that IL10 activates STAT3 signalling in the macrophages in the ageing eye, promoting their polarization towards a pro-angiogenic phenotype; interfering with this pathway reverses the pathology in a mouse model. Nature Communications doi: 10.1038/ncomms8847 Authors: Rei Nakamura, Abdoulaye Sene, Andrea Santeford, Abdelaziz Gdoura, Shunsuke Kubota, Nicole Zapata, Rajendra S. Apte
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 66
    Publication Date: 2015-08-15
    Description: Article A hybrid incompatibility between Capsella plant species is due to an interaction between two immune regulators. Here, the authors show that highly divergent haplotypes result from balancing selection in the ancestral lineage and their sorting into derived lineages facilitated the evolution of the incompatibility. Nature Communications doi: 10.1038/ncomms8960 Authors: Adrien Sicard, Christian Kappel, Emily B. Josephs, Young Wha Lee, Cindy Marona, John R. Stinchcombe, Stephen I. Wright, Michael Lenhard
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  • 67
    Publication Date: 2015-08-15
    Description: Nature Reviews Microbiology 13, 526 (2015). doi:10.1038/nrmicro3538 Author: Cláudio Nunes-Alves Persisters are dormant bacterial populations that contribute to multidrug tolerance (MDT) because they are able to escape treatment with most antibiotics, which target metabolically active cells. A new study now characterizes the molecular basis for persister generation involving HipA, a kinase that inhibits protein synthesis
    Print ISSN: 1740-1526
    Electronic ISSN: 1740-1534
    Topics: Biology , Medicine
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  • 68
    Publication Date: 2015-08-15
    Description: Nature Reviews Microbiology 13, 589 (2015). doi:10.1038/nrmicro3504 Authors: Peter Liehl, Vanessa Zuzarte-Luis & Maria M. Mota Many clinically relevant pathogens, including certain bacteria and protozoan parasites, have developed an intracellular lifestyle that enables them to nestle in customized vacuoles. Although these pathogens are protected from extracellular defences, recent findings indicate that host cells have evolved multiple strategies to unmask the pathogen
    Print ISSN: 1740-1526
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    Topics: Biology , Medicine
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  • 69
    Publication Date: 2015-08-15
    Description: Article Mapping the distribution of fluorescence molecules, rather than just their emission intensity, can improve super-resolution fluorescence microscopy. Here, the authors present a general solution for rendering the number of fluorescent molecules recorded by confocal or STED microscopy. Nature Communications doi: 10.1038/ncomms8977 Authors: Haisen Ta, Jan Keller, Markus Haltmeier, Sinem K. Saka, Jürgen Schmied, Felipe Opazo, Philip Tinnefeld, Axel Munk, Stefan W. Hell
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 70
    Publication Date: 2015-08-16
    Description: Article Persistent antigen stimulation can cause exhaustion and unresponsiveness of CD8 cells, impairing the immune response. Here the authors show that increasing the number of CD8 cells, decreasing the antigen load or providing CD4 help can overcome the exhaustion and establish a memory response. Nature Communications doi: 10.1038/ncomms8994 Authors: Juhyun Kim, Su Jeong Ryu, Keunhee Oh, Ji-Min Ju, Ji Yeong Jeon, Giri Nam, Dong-Sup Lee, Hang-Rae Kim, Joo Young Kim, Jun Chang, Thomas Sproule, Kyungho Choi, Derry Roopenian, Eun Young Choi
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 71
    Publication Date: 2015-08-16
    Description: Article Plasmonic surfaces are used as two-dimensional metamaterials for light manipulation on nanoscale, and their optical properties can be further tuned by coating. Here the authors report a new absorption-induced scattering mode in a silver nanoparticle array coated with semiconducting organic absorbers. Nature Communications doi: 10.1038/ncomms8899 Authors: Christopher E. Petoukhoff, Deirdre M. O’Carroll
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 72
    Publication Date: 2015-08-16
    Description: Article U-shaped glacial valleys dominate 〉10 ka since the last major glaciation and the transitions from glacier-dominated to fluvial regimes are poorly understood. Here, the authors use digital topographic data to show that glacial topography is rapidly replaced by fluvial topography where rock uplift rates are high. Nature Communications doi: 10.1038/ncomms9028 Authors: Günther Prasicek, Isaac J. Larsen, David R. Montgomery
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  • 73
    Publication Date: 2015-08-02
    Description: Article G protein-coupled receptors (GPCRs) are the largest family of transmembrane signaling proteins in humans and exhibit diverse activation mechanisms. Here, the authors combine electron microscopy, hydrogen deuterium exchange and Molecular dynamics simulations to gain insight into the activation mechanism of the glucagon receptor. Nature Communications doi: 10.1038/ncomms8859 Authors: Linlin Yang, Dehua Yang, Chris de Graaf, Arne Moeller, Graham M. West, Venkatasubramanian Dharmarajan, Chong Wang, Fai Y. Siu, Gaojie Song, Steffen Reedtz-Runge, Bruce D. Pascal, Beili Wu, Clinton S. Potter, Hu Zhou, Patrick R. Griffin, Bridget Carragher, Huaiyu Yang, Ming-Wei Wang, Raymond C. Stevens, Hualiang Jiang
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 74
    Publication Date: 2015-08-02
    Description: Article Light atoms are hardly visible through standard microscopy techniques, because of their smaller scattering power and higher knock-on probability. Here, the authors present an approach to probe light atoms by means of electron energy loss spectroscopy, relying on inelastically scattered electrons. Nature Communications doi: 10.1038/ncomms8943 Authors: Ryosuke Senga, Kazu Suenaga
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 75
    Publication Date: 2015-07-30
    Description: Article Unmet need exists for a vaccine against Middle East respiratory syndrome coronavirus (MERS-CoV). Here the authors report the establishment and evaluation, in mice and primates, of a series of MERS-CoV immunogens and show that they can serve as promising leads for vaccine development. Nature Communications doi: 10.1038/ncomms8712 Authors: Lingshu Wang, Wei Shi, M. Gordon Joyce, Kayvon Modjarrad, Yi Zhang, Kwanyee Leung, Christopher R. Lees, Tongqing Zhou, Hadi M. Yassine, Masaru Kanekiyo, Zhi-yong Yang, Xuejun Chen, Michelle M. Becker, Megan Freeman, Leatrice Vogel, Joshua C. Johnson, Gene Olinger, John P. Todd, Ulas Bagci, Jeffrey Solomon, Daniel J. Mollura, Lisa Hensley, Peter Jahrling, Mark R. Denison, Srinivas S. Rao, Kanta Subbarao, Peter D. Kwong, John R. Mascola, Wing-Pui Kong, Barney S. Graham
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 76
    Publication Date: 2015-07-30
    Description: Article Noble metals typically crystallize with the face-centered cubic structure. Here, the authors report the synthesis of gold nanoribbons in the 4H hexagonal polytype, a previously unreported, metastable phase of gold, and use it to stabilize 4H hexagonal phases of silver, palladium and platinum. Nature Communications doi: 10.1038/ncomms8684 Authors: Zhanxi Fan, Michel Bosman, Xiao Huang, Ding Huang, Yi Yu, Khuong P. Ong, Yuriy A. Akimov, Lin Wu, Bing Li, Jumiati Wu, Ying Huang, Qing Liu, Ching Eng Png, Chee Lip Gan, Peidong Yang, Hua Zhang
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 77
    Publication Date: 2015-07-30
    Description: Article All quantum systems are connected to their environment, and this reduces their quantumness through decoherence. Here, the authors show that the interaction between a macroscale quantum system—a micromechanical oscillator—and its environment leads to non-Markovian Brownian motion Nature Communications doi: 10.1038/ncomms8606 Authors: S. Gröblacher, A. Trubarov, N. Prigge, G. D. Cole, M. Aspelmeyer, J. Eisert
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  • 78
    Publication Date: 2015-07-30
    Description: Article Sensory cortical tuning is shaped by experience to facilitate coding of features that are predictive of behaviourally relevant outcomes. Here the authors demonstrate that rapid behaviourally driven retuning of human visual cortex involves top–down projections as well as local inhibitory interactions. Nature Communications doi: 10.1038/ncomms8823 Authors: Lisa M. McTeague, L. Forest Gruss, Andreas Keil
    Electronic ISSN: 2041-1723
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  • 79
    Publication Date: 2015-07-30
    Description: Article The MCM8-9 complex is required for repair of DNA double-strand breaks (DSBs). Here, the authors show that MCM8-9 is required for the nuclease activity of the MRE11-RAD50-NBS1 complex (MRN) and stabilizes its association with DNA damage sites, promoting resection of DSB ends. Nature Communications doi: 10.1038/ncomms8744 Authors: Kyung Yong Lee, Jun-Sub Im, Etsuko Shibata, Jonghoon Park, Naofumi Handa, Stephen C. Kowalczykowski, Anindya Dutta
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 80
    Publication Date: 2015-07-30
    Description: Article Homologous repair of DNA double strand breaks in Saccharomyces cerevisiae is dependent on several conserved Rad51 paralogs. Here the authors provide biochemical evidence that Rad55-Rad57 synergistically interacts with the Shu complex to promote Rad51 filament formation and homology directed repair. Nature Communications doi: 10.1038/ncomms8834 Authors: William A. Gaines, Stephen K. Godin, Faiz F. Kabbinavar, Timsi Rao, Andrew P. VanDemark, Patrick Sung, Kara A. Bernstein
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 81
    Publication Date: 2015-07-30
    Description: Article Phytochromes are red-light photoreceptors in plants that regulate key life cycle processes, yet their evolutionary origins are not well understood. Using transcriptomic and genomic data, Li et al. find that canonical plant phytochromes originated in a common ancestor of land plants and charophyte algae. Nature Communications doi: 10.1038/ncomms8852 Authors: Fay-Wei Li, Michael Melkonian, Carl J. Rothfels, Juan Carlos Villarreal, Dennis W. Stevenson, Sean W. Graham, Gane Ka-Shu Wong, Kathleen M. Pryer, Sarah Mathews
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 82
    Publication Date: 2015-07-30
    Description: Article Experimental studies of hydrogen at high pressure are challenging, so theory is central to understanding its phase behaviour; however, computed phase diagrams do not agree with previous measurements. Here, the authors use a quantum Monte Carlo method and present results in qualitative agreement with experiment. Nature Communications doi: 10.1038/ncomms8794 Authors: N. D. Drummond, Bartomeu Monserrat, Jonathan H. Lloyd-Williams, P. López Ríos, Chris J. Pickard, R. J. Needs
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 83
    Publication Date: 2015-07-30
    Description: Article The onset of neurodegenerative disorders is associated at the molecular level with insoluble protein aggregates, named amyloids. Here, the authors characterize by infrared nanospectroscopy and nanomechanical studies, the amyloid aggregation at the individual species scale. Nature Communications doi: 10.1038/ncomms8831 Authors: F. S. Ruggeri, G. Longo, S. Faggiano, E. Lipiec, A. Pastore, G. Dietler
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 84
    Publication Date: 2015-08-05
    Description: Article It is widely acknowledged that some form of carbon capture will be necessary to limit global warming to less than 2 °C, but to what extent remains unclear. Here, using climate-carbon models, the authors quantify the amount of negative emissions and carbon storage capacity required to meet this target. Nature Communications doi: 10.1038/ncomms8958 Authors: T. Gasser, C. Guivarch, K. Tachiiri, C. D. Jones, P. Ciais
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 85
    Publication Date: 2015-08-05
    Description: Article Despite normalization of the CA125 serum biomarker at the completion of carboplatin therapy the vast majority of patients with high grade serous ovarian cancers relapse. Here, Janzen et al ., identify a sub-population of tumor cells that are CA125 negative, cancer initiating and platinum resistant but readily eliminated with the addition of apoptosis enhancing drugs to carboplatin. Nature Communications doi: 10.1038/ncomms8956 Authors: D. M. Janzen, E. Tiourin, J. A. Salehi, D. Y. Paik, J. Lu, M. Pellegrini, S. Memarzadeh
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 86
    Publication Date: 2015-08-05
    Description: Article In metalloproteins, a metal cofactor participates in the formation of the correct fold. Here the authors demonstrate—using single molecule force spectroscopy and the native copper centre as an embedded internal reporter—that the blue-copper proteins azurin and plastocyanin unfold via two independent competing pathways under force. Nature Communications doi: 10.1038/ncomms8894 Authors: Amy E. M. Beedle, Ainhoa Lezamiz, Guillaume Stirnemann, Sergi Garcia-Manyes
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 87
    Publication Date: 2015-08-05
    Description: Article Quantum communications operate with shared multipartite entangled states, and this has to be certified in a setting where not all parties are trusted in the same way. Here the authors propose a method to certify multipartite entanglement in asymmetric scenarios and demonstrate it in an optical experiment. Nature Communications doi: 10.1038/ncomms8941 Authors: D. Cavalcanti, P. Skrzypczyk, G. H. Aguilar, R. V. Nery, P.H. Souto Ribeiro, S. P. Walborn
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 88
    Publication Date: 2015-08-05
    Description: Article The protein kinase MEKK3 interacts with CCM2, which is associated with the predominantly cerebrovascular CCM disease. Here the authors use structural, biochemical, cell biology and in vivo techniques to show that regulation of Rho signalling by the CCM2:MEKK3 complex is needed to maintain neurovascular integrity. Nature Communications doi: 10.1038/ncomms8937 Authors: Oriana S. Fisher, Hanqiang Deng, Dou Liu, Ya Zhang, Rong Wei, Yong Deng, Fan Zhang, Angeliki Louvi, Benjamin E. Turk, Titus J. Boggon, Bing Su
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 89
    Publication Date: 2015-08-05
    Description: Article Flexible energy storage systems usually have limited energy densities. Here the authors report a flexible lithium–oxygen battery with the cathode consisting of titanium dioxide nanowire arrays grown on carbon textiles, which displays high mechanical strength as well as promising electrochemical performance. Nature Communications doi: 10.1038/ncomms8892 Authors: Qing-Chao Liu, Ji-Jing Xu, Dan Xu, Xin-Bo Zhang
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
    Published by Springer Nature
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  • 90
    Publication Date: 2015-08-05
    Description: Article Large-scale dense reconstruction of neuronal circuits (or connectomics) requires methods for large-volume dense en-bloc electron microscopy (EM) staining. Here the authors develop a protocol for staining tissue blocks from mouse neocortex sized at least 1 mm in diameter, enabling correlated functional and structural circuit analyses. Nature Communications doi: 10.1038/ncomms8923 Authors: Yunfeng Hua, Philip Laserstein, Moritz Helmstaedter
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 91
    Publication Date: 2015-08-05
    Description: Article Nanonization of battery electrode particles is a usual way to enhance their conductivity, but the decreased tap density is detrimental to battery performance. Here, the authors coat micron-sized lithium iron phosphate with a conducting polymer layer and demonstrate some excellent electrochemical properties. Nature Communications doi: 10.1038/ncomms8898 Authors: Limin Guo, Yelong Zhang, Jiawei Wang, Lipo Ma, Shunchao Ma, Yantao Zhang, Erkang Wang, Yujing Bi, Deyu Wang, William C. McKee, Ye Xu, Jitao Chen, Qinghua Zhang, Cewen Nan, Lin Gu, Peter G. Bruce, Zhangquan Peng
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 92
    Publication Date: 2015-08-05
    Description: Article The behaviour of airborne fine ash during explosive volcanic eruptions is poorly understood. Here, the authors study hail formation during an eruption, proposing a mechanism of particle aggregation that leads to the fallout of fine ash and the occurrence of concentrically layered aggregates in volcanic deposits Nature Communications doi: 10.1038/ncomms8860 Authors: Alexa R. Van Eaton, Larry G. Mastin, Michael Herzog, Hans F. Schwaiger, David J. Schneider, Kristi L. Wallace, Amanda B. Clarke
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 93
    Publication Date: 2015-08-05
    Description: Article Turtles are ectothermic vertebrates that have experienced major environmental perturbations. Here the authors show that the geographical distribution of turtles was mediated by climate throughout the Mezozoic and show an increase in diversity of non-marine turtles starting in the Early Cretaceous. Nature Communications doi: 10.1038/ncomms8848 Authors: David B. Nicholson, Patricia A. Holroyd, Roger B. J. Benson, Paul M. Barrett
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 94
    Publication Date: 2015-08-06
    Description: Article Little is known about how detritivorous invertebrates cope with high levels of defensive plant polyphenols. Here, Liebeke et al . identify a new class of surface-active metabolites in earthworms exposed to high-polyphenol diets, and show that they play a protective role against precipitation of proteins. Nature Communications doi: 10.1038/ncomms8869 Authors: Manuel Liebeke, Nicole Strittmatter, Sarah Fearn, A. John Morgan, Peter Kille, Jens Fuchser, David Wallis, Vitalii Palchykov, Jeremy Robertson, Elma Lahive, David J. Spurgeon, David McPhail, Zoltán Takáts, Jacob G. Bundy
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 95
    Publication Date: 2015-08-06
    Description: Article Recalled memories enter a labile state and are thought to be restabilized through reconsolidation. Here, the authors challenge the long-held notion that reconsolidation is a distinct memory process and demonstrate that the molecular events initiated at recall act instead to constrain premature extinction. Nature Communications doi: 10.1038/ncomms8897 Authors: Simon Trent, Philip Barnes, Jeremy Hall, Kerrie L. Thomas
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 96
    Publication Date: 2015-08-06
    Description: Article Targetting tumour angiogenesis is a useful strategy to reduce tumour burden; however, the clinical benefits of anti-angiogenetic drugs are modest. Here, the authors show that HGFR signalling, which contributes to tumour angiogenesis, requires Arf6 and that blocking Arf6 can lead to reduced tumour growth in mice. Nature Communications doi: 10.1038/ncomms8925 Authors: Tsunaki Hongu, Yuji Funakoshi, Shigetomo Fukuhara, Teruhiko Suzuki, Susumu Sakimoto, Nobuyuki Takakura, Masatsugu Ema, Satoru Takahashi, Susumu Itoh, Mitsuyasu Kato, Hiroshi Hasegawa, Naoki Mochizuki, Yasunori Kanaho
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 97
    Publication Date: 2015-08-06
    Description: Article Dysfunctional redox regulation in cancer can damage dNTPs so inhibiting dNTP pool sanitizing enzymes, such as MTH1, is a potential cancer treatment. Here, Carter et al. characterize MTH2 (NUDT15) and show that it is not a dNTP sanitizer, and so is unlikely to influence the efficacy of MTH1 inhibitors. Nature Communications doi: 10.1038/ncomms8871 Authors: Megan Carter, Ann-Sofie Jemth, Anna Hagenkort, Brent D. G. Page, Robert Gustafsson, Julia J. Griese, Helge Gad, Nicholas C. K. Valerie, Matthieu Desroses, Johan Boström, Ulrika Warpman Berglund, Thomas Helleday, Pål Stenmark
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 98
    Publication Date: 2015-08-06
    Description: Article Metallic nanoantennas can enhance and confine electromagnetic fields, however, localized heating hinders many applications. Here, Caldarola et al. demonstrate both high near-field enhancement and ultra-low heat conversion in the visible-near infrared region using silicon dimer nanoantennas with 20 nm gaps. Nature Communications doi: 10.1038/ncomms8915 Authors: Martín Caldarola, Pablo Albella, Emiliano Cortés, Mohsen Rahmani, Tyler Roschuk, Gustavo Grinblat, Rupert F. Oulton, Andrea V. Bragas, Stefan A. Maier
    Electronic ISSN: 2041-1723
    Topics: Biology , Chemistry and Pharmacology , Natural Sciences in General , Physics
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  • 99
    Publication Date: 2015-08-07
    Description: Chop deficiency prevents UUO-induced renal fibrosis by attenuating fibrotic signals originated from Hmgb1/TLR4/NFκB/IL-1β signaling Cell Death and Disease 6, e1847 (August 2015). doi:10.1038/cddis.2015.206 Authors: M Zhang, Y Guo, H Fu, S Hu, J Pan, Y Wang, J Cheng, J Song, Q Yu, S Zhang, J-F Xu, G Pei, X Xiang, P Yang & C-Y Wang
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 100
    Publication Date: 2015-08-07
    Description: Protein tyrosine kinase 6 promotes ERBB2-induced mammary gland tumorigenesis in the mouse Cell Death and Disease 6, e1848 (August 2015). doi:10.1038/cddis.2015.210 Authors: M Peng, S M Ball-Kell & A L Tyner
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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