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  • Articles  (879)
  • Oryza sativa
  • nitrogen fixation
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  • 1
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    Suitability of rich-fish culture under mono and polyculture systems in the boro rice ecosystem (2021)
    In:  http://aquaticcommons.org/id/eprint/16404 | 12051 | 2015-03-27 10:06:10 | 16404 | Bangladesh Fisheries Research Institute
    Details
    Publication Date: 2021-07-04
    Description: An experiment was conducted in farmers’ fields under Paikgacha thana, Khulna to study the suitability of integrated rice-cum-fish culture. Three treatments namely T1 (Puntius gonionotus), T2 (Puntius gonionotus and Cyprinus carpio) and T3 ( Cyprinus carpio) were included for the study each having three replicates. The fish were stocked at a density of 3750/ha in all the rice plots. The physicochemical parameters of water viz., water depth, temperature, dissolved oxygen, pH, salinity, nitrate and phosphate etc. recorded during the study period were found within optimum range. Of the two cultured species C. carpio attained the highest average individual weight (160g) and survival (81.06%). With respect to biomass and income, highest average fish production and net profit per hectare (306.74kg and Tk. 8177.91) were obtained in T2 and the lowest (184.17kg and Tk. 2049.41) obtained in T1 and a significant variation (p〈0.05) in fish production was observed among the treatments while for rice production, it was insignificant. The cost benefit ratio of fish production found were 1:1.29, 1:2.14 and 1:1.90 for T1, T2 and T3, respectively.
    Keywords: Aquaculture ; rice field aquaculture ; polyculture ; fish culture ; aquaculture systems ; Cyprinus carpio ; Oryza sativa ; Puntius gonionotus
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 189-194
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  • 2
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    Growth and production of Nile tilapia (Oreochromis niloticus Lin.) in irrigated Boro rice under floodplain environment (2021)
    In:  http://aquaticcommons.org/id/eprint/16410 | 12051 | 2015-03-27 09:29:21 | 16410 | Bangladesh Fisheries Research Institute
    Details
    Publication Date: 2021-07-04
    Description: The experiment was conducted at BRRI Regional Station, Habiganj during 1994-95 to evaluate the growth and economic performance of Nile tilapia, Oreochromis niloticus, fish reared in the field of irrigated boro rice with different fertilizer levels. Grain yield of rice was not affected by fish culture. It was observed that 50% of recommended fertilizer was enough to produce increased rice yield (8-10 t/ha) at floodplain environment and additional yield was obtained with the increasing fertilizer rates. Results further indicated that O. niloticus could successfully be reared in the field of irrigated boro rice with recommended fertilizer level. Larger size of fingerlings at release had improved recovery percent, body weight gain and higher fish yield. Results also revealed that rice + fish production system produced higher net return than the system with rice alone.
    Keywords: Aquaculture ; agriculture ; fertilizers ; rice field aquaculture ; economic analysis ; biomass ; agropisciculture ; fish culture ; Oryza sativa ; Oreochromis niloticus
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 19-23
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  • 3
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    Increasing farm income by introducing fish culture in deepwater rice environment (2021)
    In:  http://aquaticcommons.org/id/eprint/16403 | 12051 | 2015-03-27 09:57:50 | 16403 | Bangladesh Fisheries Research Institute
    Details
    Publication Date: 2021-07-04
    Description: Fish culture in deep-water-rice (DWR) environment using net pen and polder systems was evaluated. In net pen rohu and Thai silver barb were cultured, whereas a 5-species combination (rohu, mrigal, common carp, grass carp and Thai silver barb) were cultured with BR3 rice variety and DWR. Boro-fish production system produced 2.8 t/ha of fish and 7.33 t/ha of rice in polder system with 5-species combinations.
    Keywords: Aquaculture ; aquaculture economics ; rice field aquaculture ; fish culture ; Aquaculture systems ; Labeo rohita ; Oryza sativa ; Puntius gonionotus
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 183-188
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  • 4
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    Evaluation of Waterhyacinth and Paddy Straw Waste for Culture of Oyster Mushrooms (2021)
    In:  http://aquaticcommons.org/id/eprint/1795 | 3 | 2011-09-29 20:02:36 | 1795 | Aquatic Plant Management Society, Inc.
    Details
    Publication Date: 2021-07-10
    Description: Waterhyacinth (Eichhornia crassipes(Mart.) Solms.) wasevaluated at ratios of 25, 50 and 75% with paddy straw (OryzasativaL.) for oyster mushroom (Pleurotus sajor-caju)cultivation.There was an increase in yield with decreasing ratiowaterhyacinth.
    Keywords: Management ; Biology ; Limnology ; Pleurotus sajor-caju ; utilization of aquatic weeds ; oyster mushroom and mushroom biological efficiency ; protein production ; Eichhornia crassipes ; Oryza sativa ; water hyacinth ; Cuddalore district ; Tamil Nadu State ; India ; oyster mushrooms ; paddy straw
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 122-123
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  • 5
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    Evaluation of Water hyacinth and Paddy Straw Waste for Culture of Oyster Mushrooms (2021)
    In:  http://aquaticcommons.org/id/eprint/1796 | 3 | 2011-09-29 20:02:38 | 1796 | Aquatic Plant Management Society, Inc.
    Details
    Publication Date: 2021-07-10
    Description: Waterhyacinth (Eichhornia crassipes(Mart.) Solms.) wasevaluated at ratios of 25, 50 and 75% with paddy straw (OryzasativaL.) for oyster mushroom (Pleurotus sajor-caju)cultivation.There was an increase in yield with decreasing ratiowaterhyacinth.
    Keywords: Management ; Biology ; Limnology ; Pleurotus sajor-caju ; utilization of aquatic weeds ; oyster mushroom and mushroom biological efficiency ; protein production ; Eichhornia crassipes ; Oryza sativa ; water hyacinth ; Cuddalore district ; Tamil Nadu State ; India ; oyster mushrooms ; paddy straw
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 122-123
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  • 6
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    Preliminary study on the construction and management of integrated rice-cum-fish culture system at Karabande, New Bussa (2021)
    In:  http://aquaticcommons.org/id/eprint/3710 | 424 | 2011-09-29 16:54:34 | 3710 | Fisheries Society of Nigeria
    Details
    Publication Date: 2021-06-29
    Description: Details are given of a study carried out in Nigeria, to introduce the practice of fish-cum-rice culture, using Sarotherodon galilaeus. Two plots each measuring 360m super(2) were used for this study and were compared with the farmer's two plots measuring 300m super(2) and 350m super(2). The plots were modified and had two central canals. Rice seedlings were transplanted into the plots after 19 days using a planting distance of 20 x 20cm. Three rice seedlings were planted per hole, using rice variety FARO 40, and grown for 90 days. About 240 and 180 S. galilaeus fingerlings of mean weight of 30g and 26g were stocked in the two experimental plots, respectively. They were fed with pelleted feed of 25% C.P. and monitored for 100 days. A yield of 22.8kg was obtained in plot A while 15.66kg was obtained in plot B. A rice yield of 250kg (i.e 5 bags) was obtained in each of the plots. The results obtained were compared with plots with no fish
    Keywords: Aquaculture ; Nigeria ; aquaculture development ; aquaculture systems ; aquaculture techniques ; fish culture ; rice field ; Oryza sativa ; Sarotherodon galilaeus
    Repository Name: AquaDocs
    Type: conference_item
    Format: application/pdf
    Format: application/pdf
    Format: 195-202
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  • 7
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    Feasibility of adopting integrated rice-cum-fish culture system to enhance the development of conventional aquaculture participation in Niger State (2021)
    In:  http://aquaticcommons.org/id/eprint/3590 | 424 | 2011-09-29 17:08:05 | 3590 | Fisheries Society of Nigeria
    Details
    Publication Date: 2021-06-27
    Description: In a survey conducted to find out the status of integrated rice-cum-fish culture in Niger State, Nigeria, 0.37 ha of Fadama wetlands was utilized for rice-cum-fish culture and at experimental stage. In the case study of this rice-cum-fish model, the Nile Tilapia (Oreochromis niloticus) was involved. The result was that 1,4720 kg/ha/yr could be produced using chick manure application under rice-cum-fish culture model. The available records reveal that 233,079 ha out of 495,000 ha of estimated Fadama in Niger State was used for rice cultivation in 1997. If 233,079 ha were to be used for integrated rice-cum fish culture, it is estimated that 343,092 mt of fish (Oreochromis niloticus) could be produced per year. The fish demand in Niger State in 2002 was 50,000 mt. The NPK application under rice-cum-fish production gave the best rice production estimated at 43,968.0 kg/ha/yr. The percentage increase in rice yield as well as increase in net income due to introduction of fish was 10.1 % and 54.4% respectively. The culture system is therefore recommended for adoption towards greater participation in aquaculture development by the farmers
    Keywords: Aquaculture ; Agriculture ; Nigeria ; agropisciculture ; aquaculture development ; aquaculture techniques ; cost analysis ; fish culture ; plant culture ; polyculture ; rice field aquaculture ; wetlands ; Oreochromis niloticus ; Oryza sativa
    Repository Name: AquaDocs
    Type: conference_item
    Format: application/pdf
    Format: application/pdf
    Format: 31-36
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  • 8
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    Prospects and problems of rice-fish culture in Nigeria (2021)
    In:  http://aquaticcommons.org/id/eprint/3592 | 424 | 2011-09-29 17:07:43 | 3592 | Fisheries Society of Nigeria
    Details
    Publication Date: 2021-06-27
    Description: This paper examines fish demand and supply and looks at on-going research works in rice-cum-fish culture in Nigeria. It examines all the pre-requisites for adopting this farming system. Economic and Financial analysis were made using experimental plots at two ecological zones of Nigeria. This farming system, which has reached advanced stage in most of Asian countries, could well be practiced in Nigeria to assist farmers to harvest both protein (from fish) and carbohydrate from rice and thereby to improve their standards of live
    Keywords: Aquaculture ; Agriculture ; Nigeria ; agropisciculture ; aquaculture development ; fish culture ; plant culture ; polyculture ; rice field aquaculture ; Oryza sativa
    Repository Name: AquaDocs
    Type: conference_item
    Format: application/pdf
    Format: application/pdf
    Format: 40-44
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  • 9
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    Nitrogen fixing bacteria, Azotobacter sp. in aquatic sediment (2021)
    In:  http://aquaticcommons.org/id/eprint/18642 | 12051 | 2015-11-05 21:27:52 | 18642 | Society of Fisheries Technologists, India
    Details
    Publication Date: 2021-07-10
    Description: Non-symbiotic, free living, nitrogen fixing bacteria, Azotobacter sp. was estimated in sediments of estuarine, marine, backwater and mangrove environments of Portonovo. Number of colony forming units (CFU) of Azotobacter sp. was less (5 to 27 cells/g of dry sediment). CFU of total heterotrophic bacteria (THB), actinomycetes and fungi were between 4.1x10 super(6) and 4.5x10 super (7), 0.8x10 super(5) and 4.9x10 super(5), 1.1x10 super(5) and 3.8x10 super(5)/g respectively. Mangrove sediments contained more CFU of the above microbial groups.
    Keywords: Environment ; coastal waters ; bacteria ; sediments ; nitrogen fixation ; Azotobacter
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 126-128
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  • 10
    Electronic Resource
    Electronic Resource
    Inheritance of resistance against biotype 2 of the Asian rice gall midge, Orseolia oryzae (2000)
    Springer
    Entomologia experimentalis et applicata 95 (2000), S. 15-19 
    Details
    ISSN: 1570-7458
    Keywords: gall midge ; Orseolia oryzae ; inheritance of resistance ; rice ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The inheritance of resistance in the rice cultivars Phalguna, ARC5984, ARC 5158, Veluthacheera, and T1477 to the Asian rice gall midge biotype 2 was studied under both natural and artificial infestation conditions against the susceptible cultivars Jaya and IR20. A single recessive gene in Veluthacheera and two recessive complementary genes in T1477 control resistance. Phalguna and ARC5984 possess a single dominant gene while ARC5158 has a single dominant and a single recessive gene for resistance. Allelism studies showed that genes for resistance in Veluthacheera and T1477 are allelic but non-allelic to the resistance genes in Phalguna and ARC5984, which are allelic to each other. Genes for resistance in ARC5158 are allelic to resistance genes of the other four donors. There was no cytoplasmic inhibition of resistance by the susceptible parents.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1003998201257
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  • 11
    Electronic Resource
    Electronic Resource
    Efficiency of nitrogen-15-labelled fertilizers for rice and rye-grass cultivated in an Ultisol of Brazilian Amazonia (2000)
    Springer
    Biology and fertility of soils 31 (2000), S. 329-333 
    Details
    ISSN: 1432-0789
    Keywords: Key words Acid soil ; Brazilian Amazonia ; N use efficiency ; Priming effect ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  The objective of this study was to determine the efficiency of two N fertilizers, (NH4)2SO4 and urea, for rice (Oryza sativa L.) and rye-grass (Lolium multiflorum L.) cultivated in an Ultisol of central Amazonia using 15N as a tracer. Rice was cultivated in the field, while rye-grass was grown in a phytotron. Fertilization with (NH4)2SO4 caused a 16% increase in the yield of rice grains and urea a 36% increase. In both crops total N uptake and N use efficiency of the fertilizers were higher for urea than for (NH4)2SO4. The low values for N derived from fertilizer showed that the fertilizers contributed little to the total N absorbed by the plants. The "priming effect" or positive added N interaction (ANI) between the fertilizer N and soil organic N was observed, especially with urea. Immobilization by soil microorganisms was greater in the presence of urea, while losses were always higher with the (NH4)2SO4 treatments. These losses were significant, and their reduction should allow more efficient use of this N fertilizer. It is possible that the N use efficiency was higher for urea due to a pH increase, caused by urea hydrolysis, which in turn may have favoured the activity of nitrifying bacteria in this extremely acid soil.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740050664
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  • 12
    Electronic Resource
    Electronic Resource
    Fallow residue management effects on upland rice in three agroecological zones of West Africa (2000)
    Springer
    Biology and fertility of soils 31 (2000), S. 501-507 
    Details
    ISSN: 1432-0789
    Keywords: Key words Fallow ; Legumes ; Nitrogen fixation ; Oryza sativa ; Côte d'Ivoire
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Geosciences , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Improving fallow quality in upland rice-fallow rotations in West Africa through the site-specific use of leguminous cover crops has been shown to sustain the productivity of such systems. We studied the effects of a range of residue management practices (removal, burning, mulching and incorporation) on fallow biomass and N accumulation, on weed biomass and yield response of upland rice and on changes in soil physical and chemical characteristics in 2-year field trials conducted in three agroecological zones of Côte d'Ivoire. Across fallow management treatments and agroecological zones, rice yields were on average 20–30% higher in legume than in natural fallow plots. Weed biomass was highest in the savanna zone and lowest in the bimodal forest and tended to be less following a legume fallow. Regardless of the type of fallow vegetation and agroecological zone, biomass removal resulted in the lowest rice yields that varied from 0.5 t ha–1 in the derived savanna zone to 1.5 t ha–1 in the Guinea savanna zone. Burning of the fallow vegetation significantly increased yield over residue removal in the derived savanna (0.27 t ha–1, P〈0.05) and bimodal forest zones (0.27 t ha–1, P〈0.01), but not in the Guinea savanna. In both savanna environments, residue incorporation was superior to the farmers' practice of residue removal and rice yield increases were related to amounts of fallow N returned to the soil (r 2=0.803, P〈0.01). In the forest zone, the farmers' practice of residue burning produced the highest yield (1.43 t ha-1 in the case of legumes) and resulted in the lowest weed biomass (0.02 t ha–1). Regardless of the site, improving the quality of the fallow or of its management had no significant effects on either soil physical or soil chemical characteristics after two fallow cycles. We conclude that incorporation of legume residues is a desirable practice for rice-based fallow rotation systems in savanna environments. No promising residue management alternatives to slash-and-burn were apparent for the forest zone. Determining the possible effects on soil productivity will require longer-term experiments.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s003740000199
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  • 13
    Electronic Resource
    Electronic Resource
    Using a Crop/Soil Simulation Model and GIS Techniques to Assess Methane Emissions from Rice Fields in Asia. I. Model Development (2000)
    Springer
    Nutrient cycling in agroecosystems 58 (2000), S. 141-159 
    Details
    ISSN: 1573-0867
    Keywords: methane ; rice ; Oryza sativa ; anaerobic ; model ; simulation ; carbon dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The development of the MERES (Methane Emissions in Rice EcoSystems) model for simulating methane (CH4) emissions from rice fields is described. The CERES-Rice crop simulation model was used as a basis, employing the existing routines simulating soil organic matter (SOM) decomposition to predict the amount of subsrate available for methanogenesis. This was linked to an existing submodel, described elsewhere in this volume (Arah & Kirk, 2000), which calculates steady-state fluxes and concentrations of CH4 and O2 in flooded soils. Extra routines were also incorporated to simulate the influence of the combined pool of alternative electron acceptors in the soil (i.e., NO3 −, Mn4+, Fe3+, SO4 2−) on CH4 production. The rate of substrate supply is calculated in the SOM routines of the CERES-Rice model from (a) the rate of decomposition of soil organic material including that left from the previous crop and any additions of organic matter, (b) root exudates (modified from the original CERES-Rice model using recent laboratory data), and (c) the decomposition of dead roots from the current crop. A fraction of this rate of substrate supply, determined by the concentration of the oxidized form of the alternative electron acceptor pool, is converted to CO2 by bacteria which outcompete the methanogenic bacteria, thereby suppressing CH4 production. Any remaining fraction of the substrate supply rate is assumed to be potentially available for methanogenesis. The CH4 dynamics submodel uses this potetial methanogenesis rate, along with a description of the root length distribution in the soil profile supplied by the crop model, to calculate the steady-state concentrations and fluxes of O2 and CH4. The reduced form of the alternative electron acceptor pool is allowed to reoxidize when soil pores fill with air if the field is drained. The MERES model was able to explain well the seasonal patterns of CH4 emissions in an experiment involving mid- and end-season drainage and additions of organic material at IRRI in the Philippines.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1009894619446
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  • 14
    Electronic Resource
    Electronic Resource
    Using a Crop/Soil Simulation Model and GIS Techniques to Assess Methane Emissions from Rice Fields in Asia. II. Model Validation and Sensitivity Analysis (2000)
    Springer
    Nutrient cycling in agroecosystems 58 (2000), S. 161-177 
    Details
    ISSN: 1573-0867
    Keywords: methane ; rice ; Oryza sativa ; anaerobic ; model ; simulation ; carbon dynamics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The MERES (Methane Emissions from Rice EcoSystems) simulation model was tested using experimental data from IRRI and Maligaya in the Philippines and from Hangzhou in China. There was good agreement between simulated and observed values of total aboveground biomass, root weight, grain yield, and seasonal methane (CH4) emissions. The importance of the contribution of the rice crop to CH4 emissions was highlighted. Rhizodeposition (root exudation and root death) was predicted to contribute about 380 kg C ha−1 of methanogenic substrate over the season, representing 37% of the total methanogenic substrate from all sources when no organic amendments were added. A further 225 kg C ha−1 (22%) was predicted to come from previous crop residues, giving a total of around 60% originating from the rice crop, with the remaining 41% coming from the humic fraction of the soil organic matter (SOM). Sensitivity analysis suggested that the parameter representing transmissivity to gaseous transfer per unit root length (λr) was important in determining seasonal CH4 emissions. As this transmissivity increased, more O2 was able to diffuse to the rhizosphere, so that CH4 production by methanogens was reduced and more CH4 was oxidized by methanotrophs. These effects outweighed the opposing influence of increased rate of transport of CH4 through the plant, so that the overall effect was to reduce the amount of CH4 emitted over the season. Varying the root-shoot ratio of the crop was predicted to have little effect on seasonal emissions, the increased rates of rhizodeposition being counteracted by the increased rates of O2 diffusion to the rhizosphere. Increasing the length of a midseason drainage period reduced CH4 emissions significantly, but periods longer than 6–7 d also decreased rice yields. Organic amendments with low C/N were predicted to be more beneficial, both in terms of enhancing crop yields and reducing CH4 emissions, even when the same amount of C was applied. This was due to higher rates of immobilization of C into microbial biomass, removing it temporarily as a methanogenic substrate.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1009846703516
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  • 15
    Electronic Resource
    Electronic Resource
    QTLs for cell-membrane stability mapped in rice (Oryza sativa L.) under drought stress (2000)
    Springer
    Theoretical and applied genetics 100 (2000), S. 1197-1202 
    Details
    ISSN: 1432-2242
    Keywords: Key words  Cell membrane stability ; Drought resistance ; Oryza sativa ; QTLs ; Rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Cell-membrane stability (CMS) is considered to be one of the major selection indices of drought tolerance in cereals. In order to determine which genomic region is responsible for CMS, 104 rice (Oryza sativa L.) doubled haploid (DH) lines derived from a cross between CT9993–5-10–1-M and IR62266-42–6-2 were studied in the greenhouse in a slowly developed drought stress environment. Drought stress was induced on 50-day-old plants by withholding water. The intensity of stress was assessed daily by visual scoring of leaf wilting and by measuring leaf relative water content (RWC). The leaf samples were collected from both control (well-watered) and stressed plants (at 60–65% of RWC), and the standard test for CMS was carried out in the laboratory. There was no significant difference (P〉0.05) in RWC between the two parental lines as well as among the 104 lines, indicating that all the plants were sampled at a uniform stress level. However, a significant difference (P〈0.05) in CMS was observed between the two parental lines and among the population. No significant correlation was found between CMS and RWC, indicating that the variation in CMS was genotypic in nature. The continuous distribution of CMS and its broad-sense heritability (34%) indicates that CMS should be polygenic in nature. A linkage map of this population comprising of 145 RFLPs, 153 AFLPs and 17 microsatellite markers was used for QTL analysis. Composite interval mapping identified nine putative QTLs for CMS located on chromosomes 1, 3, 7, 8, 9, 11 and 12. The amount of phenotypic variation that was explained by individual QTLs ranged from 13.4% to 42.1%. Four significant (P〈0.05) pairs of digenic interactions between the detected QTLs for CMS were observed. The identification of QTLs for this important trait will be useful in breeding for the improvement of drought tolerance in rice. This is the first report of mapping QTLs associated with CMS under a natural water stress condition in any crop plants.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s001220051424
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  • 16
    Electronic Resource
    Electronic Resource
    PCR-based molecular markers for the fragrance gene in rice (Oryza sativa. L.) (2000)
    Springer
    Theoretical and applied genetics 101 (2000), S. 364-371 
    Details
    ISSN: 1432-2242
    Keywords: Keywords Fragrance ; Rice ; PCR marker ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  The genomic DNA clone RG28, linked to the major fragrance gene of rice (fgr), was assessed for polymorphism in order to produce a PCR-based marker for fragrance. A small mono-nucleotide repeat, that was polymorphic between a pair of fragrant and non-fragrant cultivars, was identified and developed into a co-dominant PCR-based marker. The polymorphism-information-content determinations for three microsatellite markers, that have been genetically mapped near RG28, are also presented. These PCR-based markers will be highly useful in distinguishing fragrance-producing alleles from non-fragrance-producing alleles at the fgr locus.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s001220051492
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  • 17
    Electronic Resource
    Electronic Resource
    A combined RFLP and AFLP linkage map of upland rice (Oryza sativa L.) used to identify QTLs for root-penetration ability (2000)
    Springer
    Theoretical and applied genetics 100 (2000), S. 49-56 
    Details
    ISSN: 1432-2242
    Keywords: Key words Drought resistance ; Oryza sativa ; QTL ; Rice ; Root penetration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Acombined RFLP and AFLP linkage map of an F6 recombinant inbred population, which was derived from a previously mapped F2 of a cross between the two drought resistant upland rice varieties Bala and Azucena, is presented. The map contains 101 RFLP and 34 AFLP markers on 17 linkage groups covering 1680 cM. Also presented is the approximate mapping position of a further four RFLP and 75 AFLP markers, which either could not be given a unique place on the map or for which the available data is not sufficient to allow confident positioning, and the result of quantitative trait locus (QTL) mapping of traits related to root-penetration ability. Root penetration was assessed by counting the number of root axes that penetrated a 3 mm-thick layer consisting of 80% wax and 20% white soft paraffin. Good root penetration would be expected to increase drought resistance where soil strength is high. Single-marker analysis revealed seven QTLs for the number of roots which penetrate the wax layer. In identical locations were seven QTLs for the ratio of penetrated to the total number of roots. Transgressive inheritance of positive alleles from Bala explained four of these QTLs. Comparison of the QTLs identified here with previous reports of QTLs for root morphology suggest that alleles which improve root penetration ability may also either make the roots longer or thicker.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s001220050007
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  • 18
    Electronic Resource
    Electronic Resource
    Thermochemical Aspects of the Conversion of the Gaseous System CO2-N2-H2O into a Solid Mixture of Amino Acids (2000)
    Springer
    Journal of thermal analysis and calorimetry 60 (2000), S. 1111-1121 
    Details
    ISSN: 1572-8943
    Keywords: amino acids ; CO2 utilisation ; electric discharge ; nitrogen fixation ; origin of life on Earth ; oxamidato complexes ; tetra-pyrrole complexes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Conversion of the gaseous mixture CO2(g)+N2(g)+H2O(g) to a solid amino acid condensate in an electric discharge plasma has high efficiency of the energy transfer from the different plasma components into chemical processes. The basic activation process is activation of the N2 metastable electronic state, followed by formation of NCO* and ON-NCO free-radicals and generation of many reactive radicals. These radicals help to overcome the high activation energy of thermal dissociation of N2 to N (950 kJ=9.846 eV). The major product is a statistical polycondensate containing the amino acids: arginine, lysine, histidine, methionine, glycine, alanine, serine and aspartic acid. This information was obtained by comparing the IR spectra of the products with reference IR absorption spectra of pure components. Identification of the individual amino acids in the solid product was performed by HPLC, when samples were dissolved using 6 M HCl applied at 100°C for 24 h. Properties of the condensate were estimated using thermogravimetric analysis. Small amounts of oxamidato complexes and oligo pyrrole structures are formed on the electrode surface giving the surface catalytic properties. The gas cleaning process has practical applicability (production of useful fertilizers, reduction of the CO2 concentration in the atmosphere) and may also contribute to explanation of the origin of life on Earth.
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    URL: http://dx.doi.org/10.1023/A:1010152901749
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    Plasma Technologies for Reducing CO2 Emissions From Combustion Exhaust with Toxic Admixtures to Utilisable Products (2000)
    Springer
    Journal of thermal analysis and calorimetry 61 (2000), S. 273-287 
    Details
    ISSN: 1572-8943
    Keywords: amino acids ; CO2 utilisation ; electric discharge ; exhaust gas cleaning ; nitrogen fixation ; origin of life on Earth ; oxamidato complexes ; tetra-pyrrole complexes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The method reported here provides a contribution to CO2 and combustion exhaust utilisation. A multifunctional system for gas removal was tested on various sources of exhaust (internal combustion engine, brown coal boiler, bituminous pulverised coal boiler, gas boiler, glass oven, VOC sources) in full-scale or by-pass gas flow volumes. A spontaneously-pulsing, direct-current electric discharge operating in a corona geometry was used. The discharge has strongly shining channels migrating quickly along the stressed electrode. The synergetic effect of electric discharge and heterogeneous catalysis on the organometallic part of the product formed on the non-stressed electrode was responsible for the specific character of the products. The final product of the process is a powder with a fractal structure on the microscopic level with low specific mass and insoluble in water. The main component (95%) of the solid product is an amorphous condensate of amino acids with about 5% of organometallic compound with catalytic properties. The product was analysed using IR absorption spectrometry, microscopic photography, HPLC and thermogravimetry. The following amino acids were observed in the final product: alanine, serine, glycine, aspartic acid, lysine, arginine, methionine, histidine.
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    URL: http://dx.doi.org/10.1023/A:1010157918165
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    Growth Inhibitory Effects of Nutgrass (Cyperus rotundus) on Rice (Oryza sativa) Seedlings (2000)
    Springer
    Journal of chemical ecology 26 (2000), S. 2221-2231 
    Details
    ISSN: 1573-1561
    Keywords: Rice ; Oryza sativa ; nutgrass ; Cyperus rotundus ; growth inhibition ; allelopathy ; plant phenolics ; fatty acids ; GC-MS
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Abstract Growth inhibitory effects of aqueous extracts and leachates of leaves and tubers of Cyperus rotundus L. were investigated by using rice (Oryza sativa L.) seedling as a bioassay material. Both the extracts and leachates of Cyperus were inhibitory to the growth of rice seedlings. Growth inhibition was more pronounced in the presence of aqueous extracts than the leachates. The extract and leachate of leaves had higher total phenolic contents than those of the tubers. Soil amendment with fresh leaves of Cyperus reduced plant height, leaf area, and root and shoot weight of rice seedlings. Total phenolic content was higher in soil amended with fresh Cyperus leaves than the unamended control soil. Nineteen compounds were tentatively identified from the aqueous extracts of leaves and tubers by ethyl acetate extraction followed by gas chromatography–mass spectroscopy (GC-MS). Dicarboxylic, phenolic, and fatty acids were the major compounds. Our results suggest that Cyperus may affect the growth and establishment of rice seedlings after sowing or transplanting, especially when Cyperus plants are mixed in soil during land preparation by ploughing in rain-fed rice culture.
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    URL: http://dx.doi.org/10.1023/A:1005532802836
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    Developing prolamine protein bodies are associated with the cortical cytoskeleton in rice endosperm cells (2000)
    Springer
    Planta 211 (2000), S. 227-238 
    Details
    ISSN: 1432-2048
    Keywords: Key words: Cortical cytoskeleton ; Endoplasmic reticulum subdomain ; Endosperm ; mRNA localization ; Oryza sativa ; Protein body
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract.  The mRNAs that encode the prolamine storage proteins in rice (Oryza sativa L.) endosperm cells are enriched on the surface of the prolamine protein bodies (PBs), a subcellular structure consisting of a prolamine intracisternal granule surrounded by rough endoplasmic reticulum membrane. Previous biochemical studies (D.G. Muench et al., 1998, Plant Physiol. 116: 559–569) have shown that prolamine mRNAs may be anchored to the PB surface via the cytoskeleton. To better understand the mechanism and role of mRNA localization in rice endosperm cells, we studied the subcellular development of prolamine PBs and their relationship with the cytoskeleton in rice endosperm cells. Confocal microscopy of endosperm cells showed that, unlike the glutelin PBs, the developing prolamine PBs are not randomly distributed within the cell, but instead are often enriched in the cortical region of the cell only a few micrometers beneath the plasma membrane. In addition, the peripheral prolamine PBs are closely associated with the cortical microtubule and actin filament networks. The cortical enrichment of rice prolamine protein bodies represents a unique example of endoplasmic reticulum subdomain localization in plant cells. The interaction of this endoplasmic reticulum subdomain with the cytoskeleton provides new insights on the possible mechanism and role of mRNA localization in plants.
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    URL: http://dx.doi.org/10.1007/PL00008159
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    Promoter strength influences polyamine metabolism and morphogenic capacity in transgenic rice tissues expressing the oat adc cDNA constitutively (2000)
    Springer
    Transgenic research 9 (2000), S. 33-42 
    Details
    ISSN: 1573-9368
    Keywords: arginine decarboxylase ; polyamines ; Oryza sativa ; morphogenesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We analyzed molecularly and biochemically a series of transgenic rice lines expressing the oat adc (arginine decarboxylase) cDNA under the control of the constitutive maize ubiquitin 1 promoter. We established baseline biochemical parameters to elucidate the role of polyamines (PAs) during morphogenesis. We measured mRNA levels, ADC enzyme activity and cellular PAs in dedifferentiated callus. Polyamine levels were also quantified in two subsequent developmental stages – regenerating tissue and differentiated shoots. We observed significant (P〈0.05) differences in the levels of individual PAs at the three developmental stages. The amounts of putrescine (Put) and spermidine (Spd) in dedifferentiated transgenic callus were lower than those in the wild type or in hpt (hygromycin resistant)-controls, whereas the amount of spermine (Spm) was increased up to two-fold. In regenerating tissue, this trend was reversed, with significantly higher levels of Put and Spd (P〈0.05), and lower levels of Spm (P〈0.05) compared to non-transformed or hpt-control tissues at the same developmental stage. In differentiated shoots, there was a general increase in PA levels, with significant increases in Put, Spd, and Spm (P〈0.05); on occasion reaching six times the level observed in wild type and hpt-control tissues. These results contrast those we reported previously using the weaker CaMV 35S promoter driving adc expression. mRNA measurements and ADC enzyme activity were consistently higher (P〈0.01) in all tissues expressing pUbiadcs compared to equivalent tissues engineered with 35Sadc. Our findings are consistent with a threshold model which postulates that high adc expression leading to production of Put above a basal level is necessary to generate a big enough metabolic pool to trigger PA flux through the pathway leading to an increase in the concentration of Spd and Spm. This can be best accomplished by a strong constitutive promoter driving adc. We discuss our results in the context of flux through the PA pathway and its impact on morphogenesis.
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    URL: http://dx.doi.org/10.1023/A:1008997822463
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    Senescence in the nongreening region of the rice (Oryza sativa) coleoptile (2000)
    Springer
    Protoplasma 214 (2000), S. 180-193 
    Details
    ISSN: 1615-6102
    Keywords: Amyloplast ; Coleoptile ; Development ; Mitochondrion ; Oryza sativa ; Senescence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The coleoptile of rice (Oryza sativa L. cv. Nippon-bare) emerges from the imbibed seed on day 2 after sowing and ceases its growth on day 3. In cross section, the cells near the outer epidermis turn into green between days 2 and 3, while those near the inner epidermis remain colorless. In this study, the complete process of the development in the nongreening cells in the coleoptile was examined by fluorescence and electron microscopy. Embryonic morphology on day 0 was rapidly converted into the differentiated greening or nongreening cells between days 1 and 2. Senescence in the inner, nongreening region first appeared on day 4 in the third or fourth cell layer from the inner epidermis and then spread towards both the inner and the outer epidermis, and the inner cells collapsed completely before the outer cells senesced. Cells adjacent to the inner epidermis, which senesced slowly, followed a sequence of events during development: (1) degradation of plastid DNA; (2) dispersal of nuclear chromatin, differentiation of plastids into amyloplasts, degradation of mitochondrial DNA; (3) degradation of the starch in amyloplasts; (4) disorganization of plastids; (5) condensation of the nucleus, shrinkage of mitochondria; (6) complete loss of cellular components, distortion of cell walls. In the interior cells, the early events including degeneration of plastid DNA and mitochondrial DNA occurred in parallel with those in the cells adjacent to the inner epidermis, yet rapid collapse of all the cellular components proceeded between days 3 and 5, and nuclear condensation could not be detected.
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    URL: http://dx.doi.org/10.1007/BF01279062
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    Microtubule reorganization during pollen development of rice (Oryza sativa L.) (2000)
    Springer
    Protoplasma 210 (2000), S. 188-201 
    Details
    ISSN: 1615-6102
    Keywords: Microtubules ; Oryza sativa ; Rice ; Microspore formation ; Pollen development ; Asymmetrical cell division
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Anthers of rice (Oryza sativa L.) at different stages of development were cryofixed, freeze-substituted, and embedded in methacrylate. Sections were then cut and immuno-labeled with anti-tubulin to localize microspore microtubules. Changes in microtubule distribution pattern were followed by confocal fluorescence microscopy. To facilitate description, pollen development has been divided into four developmental stages (twenty-four phases). (i) The young-microspore stage (phases 1–5) is characterized by the formation of a vacuole. When the vacuole enlarges, the nucleus moves to the periphery of the cell. Afterwards the nucleus migrates to a site opposite the germ pore. Between the germ pore and the nucleus there is a strand of cytoplasm which contains some microtubules that run in parallel to the pore-nucleus axis. (ii) At the first-mitosis stage (phases 6–12) a perinuclear band of tubules appears which eventually girdles the nucleus. (iii) At the generative-cell development stage (phases 13–20), after the first mitosis a generative cell forms at a site opposite the germ pore. It is initially lens-shaped and part of its wall is appressed closely to the plasma membrane of the microspore. The wall of the generative cell contains cellulose and callose. Later the generative cell detaches from the microspore wall and migrates into the cytoplasm of the vegetative cell. In the vegetative cytoplasm the generative cell becomes spherical. (iv) At the second-mitosis and sperm formation stage (phases 21–24) the mitotic division is symmetrical. Before division, the shape of the generative cell changes from spherical to spindle-shaped. After cell division two sperm cells form, although they do not detach from each other. Later, cytoplasmic processes containing microtubules develop at the two ends of the sperm cells. These long processes remain linked to each other to form a paired unit.
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    URL: http://dx.doi.org/10.1007/BF01276859
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    Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins (2000)
    Springer
    Molecular genetics and genomics 263 (2000), S. 359-366 
    Details
    ISSN: 1617-4623
    Keywords: Key words Cytokinins ; Low temperature ; Oryza sativa ; Protein kinase ; Zea mays
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The wheat gene WPK4 encodes a 56-kDa protein kinase that belongs to group 3 of the SNF1-related protein kinase family (SnRK3), and is up-regulated by light and cytokinins and down-regulated by sucrose. In order to determine whether or not this particular regulation pattern is general among plant species, we isolated and characterized homologous genes from rice and maize. Two rice genes, OsPK4 and OsPK7, encode proteins comprising 508 and 520 amino acids, and show, respectively, 75% and 76% sequence similarity to WPK4. OsPK4 and OsPK7 proteins produced in Escherichia coli were able to phosphorylate themselves and myelin basic proteins, the reaction requiring magnesium and/or manganese ions. Transcripts of OsPK4 were detected in all tissues tested, and amounts were increased upon illumination, nutrient deprivation and treatment with cytokinins. In contrast, transcripts of OsPK7 were not found in any tissues except in mature leaves at low levels, and did not accumulate under any of the stress conditions examined. A maize gene, ZmPK4, encodes a protein with 518 amino acids that shows 74% similarity to WPK4. Its transcripts were constitutively expressed in all tissues, regardless of light, nutrient and cytokinin status, but were increased upon exposure to low temperature. These results indicate that, despite the sequence similarity between their products, genes for SnRK3 proteins are differentially regulated in response to environmental stimuli.
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    URL: http://dx.doi.org/10.1007/s004380051179
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    The influence of cyst nematodes (Heterodera sacchari) and drought on water relations and growth of upland rice in Côte d'Ivoire (2000)
    Springer
    Plant and soil 220 (2000), S. 235-242 
    Details
    ISSN: 1573-5036
    Keywords: drought ; Heterodera sacchari ; nematode ; Oryza glaberrima ; Oryza sativa ; plant water status ; rice ; West Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract This study was undertaken to examine the influence of cyst nematodes (Heterodera sacchari) and drought stress, in isolation and combination, on the water status and growth of rice in Côte d'Ivoire. Drought is considered one of the main yield-limiting factors to upland rice in West Africa, while H. sacchari is emerging as a potentially serious pest. A field study conducted during 1997 at the West Africa Rice Development Association (WARDA) showed that under low water availability in sandy soil, damage to a nematode susceptible Oryza sativa (cv IDSA6) is significant. Visual drought score and physiological parameters were significantly affected (P≤0.01) in plots with a mean population density of 39.4 H. sacchari eggs ml-1 soil at 81 days after sowing, compared to plots with a mean density of 1.2 eggs ml-1. Stomatal conductance, leaf water potential and relative water content were lower, leaf chlorophyll content was greater, and near total yield losses were observed in higher nematode density plots. In 1-l pots following 5 days of imposed drought, the H. sacchari-resistant and drought-resistant O. glaberrima (cv CG14) showed a reduction in stomatal conductance of 73% and in leaf water potential by 0.96 MPa (54%). The effect of H. sacchari (473 eggs l-1 soil) inoculated as cysts to soil before sowing was similar but less severe. The combination of both stresses had similar but yet more pronounced effects than the single stresses on stomatal conductance, leaf water potential and leaf dry weight in CG14. IDSA6 responded in a similar manner to CG14, but less acutely to both stresses. Only the combined stresses resulted in a significant (P≤0.05) reduction in osmotic potential and root dry weight compared with the control, for either CG14 or IDSA6. It is suggested that H. sacchari increased the effects of drought and drought-related losses. This may give a false impression of drought susceptibility in field screening for cultivars, and complicate models which predict crop damage caused by nematodes.
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    URL: http://dx.doi.org/10.1023/A:1004734415254
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    Identification of segregation-distortion-neutral alleles to improve pollen fertility of indica-japonica hybrids in rice (Oryza sativa L.) (2000)
    Springer
    Euphytica 113 (2000), S. 101-107 
    Details
    ISSN: 1573-5060
    Keywords: gamete abortion ; Oryza sativa ; pollen ; wide compatibility
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Utilization of the pronounced heterosis of indica-japonica hybrids in rice had been difficult due to panicle sterility caused by male and female gamete abortion in such hybrids. But the female gamete abortion in the most indica-japonicahybrids has been solved by using an abortion-neutral gene S-5 n called as wide compatibility gene. On the other hand, the problem of pollen sterility remains to be solved for such hybrids. This study was conducted to identify abortion-neutral genes for pollen that may be utilized to alleviate pollen sterility in distant crosses. Some cultivars like Ketan Nangka (KN) and Dular, which are known as wide compatibility variety (WCV), were tested to find whether they possess neutral alleles for segregation distortion of marker genes. The distorted segregation of markers as well as normal segregation were confirmed among progeny lines of three-way crosses, WCV/indica//japonica and japonica//indica/WCV. Neutral alleles for segregation distortion were identified at two gamete gene loci (ga), i.e., ga-14(t) on chromosome 3 and ga-11 on chromosome 7. A new locus ga-14(t) was identified in between Pgi-1 and bc-1 and independent of ga-3 on chromosome 3. The neutral alleles at the two loci may be used to solve pollen sterility in indica-japonica hybrids.
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    URL: http://dx.doi.org/10.1023/A:1003929312252
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    Leaf K/Na ratio predicts salinity induced yield loss in irrigated rice (2000)
    Springer
    Euphytica 113 (2000), S. 109-118 
    Details
    ISSN: 1573-5060
    Keywords: grain yield ; leaf K/Na ratio ; Oryza sativa ; salinity ; screening tools ; yield reduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Salinity is a major constraint to irrigated rice production, particularly in semi-arid and arid climates. Irrigated rice is a well suited crop to controlling and even decreasing soil salinity, but rice is a salt-susceptible crop and yield losses due to salinity can be substantial. The objective of this study was to develop a highly predictive screening tool for the vegetative growth stage of rice to estimate salinity-induced yield losses. Twenty-one rice genotypes were grown over seven seasons in a field trials in Ndiaye, Senegal, between 1991 and 1995 and were subjected to irrigation with moderately saline water (3.5 mS cm-1, electrical conductivity) or irrigation with fresh water. Potassium/sodium ratios of the youngest three leaves (K/NaLeaves) were determined by flame photometry at the late vegetative stage. Grain yield was determined at maturity. All cultivars showed strong log-linear correlations between K/NaLeaves and grain yield, but intercept and slope of those correlations differed between seasons for a given genotype and between genotypes. The K/NaLeaves under salinity was related to grain yield under salinity relative to freshwater controls. There was a highly significant correlation (p 〈 0.001) between K/NaLeaves and salinity-induced grain yield reduction: the most susceptible cultivars had lowest K/NaLeaves and the strongest yield reductions. Although there were major differences in the effects of salinity on crops in both the hot dry season (HDS) and the wet season, the correlation was equally significant across cropping seasons. The earliest possible time to establish the relationship between K/NaLeaves under salinity and grain yield reduction due to salinity was investigated in an additional trial in the HDS 1998. About 60 days after sowing, salinity-induced yield loss could be predicted through K/NaLeaves with a high degree of confidence (p 〈 0.01). A screening system for salinity resistance of rice, particularly in arid and semi-arid climates, is proposed based on the correlation between K/NaLeaves under salinity and salinity-induced yield losses.
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    URL: http://dx.doi.org/10.1023/A:1003981313160
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    Regeneration and genetic transformation of Spanish rice cultivars using mature embryos (2000)
    Springer
    Euphytica 114 (2000), S. 117-122 
    Details
    ISSN: 1573-5060
    Keywords: genetic transformation ; japonica rice cultivar ; mature embryo ; Oryza sativa ; plant regeneration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To establish a plant regeneration system from embryogenic callus derived from mature rice embryos, the addition of aminoacids and the effect of two macronutrient solutions MSD and N6D to the basal callus induction medium was tested in three Spanish varieties, Senia, Tebre and Bahia. Aminoacids enhanced the production of embryogenic callus in Tebre and Senia whereas in the case of Bahia, embryogenic callus, which gave rise to a high rate of differentiated shoots, was induced without aminoacids. The macronutrient solution had also to be adjusted for each variety. Pre-regeneration treatment with ABA significantly improved the regeneration rate in all media tested, independently of the media in which the embryogenic callus were induced. In a comparison of growth regulators, BA yielded more shoots than Kin in all varieties whereas the effect of the auxins NAA or IAA was dependent on the variety. Transgenic plants from the three varieties were obtained via an Agrobacterium tumefaciens transformation system, using the optimised culture media.
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    URL: http://dx.doi.org/10.1023/A:1003941913609
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    Screening the ability of rice roots to overcome the mechanical impedance of wax layers: importance of test conditions and measurement criteria (2000)
    Springer
    Plant and soil 219 (2000), S. 187-196 
    Details
    ISSN: 1573-5036
    Keywords: mechanical impedance ; Oryza sativa ; rice ; roots ; screening ; wax layers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The development of a wax layer method for screening the ability of rice (Oryza sativa L.) roots to overcome mechanical impedance is described. Wax layers (3 mm thick) made of mixtures of white soft paraffin and paraffin wax were installed 50 mm deep in tubes of sand. The sand was watered with nutrient solution and planted with 3-d old rice seedlings. The numbers of root axes per plant that had penetrated the wax layers 24 d after planting were counted. The ratio of penetrated to total root axes per plant gave a misleading measure of root penetration ability, as rice varieties differed in the ratio of penetrated to total axes in a low impedance (3% wax) control. In non-flooded conditions, a 60% wax layer decreased root penetration (number of roots penetrating the wax layer per plant) to a mean of 74% of the low impedance control, whereas an 80% wax layer decreased mean root penetration to 31% of the control. The best measure of root penetration in non-flooded conditions was the number of axes penetrating an 80% wax layer. Flooding decreased root penetration of a 60% wax layer to a mean of 26% of the low impedance control. The best measure of root penetration in flooded conditions was the number of axes penetrating a 60% wax layer.
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    URL: http://dx.doi.org/10.1023/A:1004753900945
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    Cd2+ effects on transmembrane electrical potential difference, respiration and membrane permeability of rice (Oryza sativa L) roots. (2000)
    Springer
    Plant and soil 219 (2000), S. 21-28 
    Details
    ISSN: 1573-5036
    Keywords: cadmium ; membrane permeability ; Oryza sativa ; respiration ; transmembrane electrical potential difference (Em)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Among other detrimental effects of the heavy metal Cd2+, a decrease in the plant content of essential mineral nutrients is known. In this study, the effect of Cd2+ on different physiological activities of rice roots involved in nutrient acquisition has been studied. Upon addition of 0.1 or 1 mM Cd2+ to the experimental solution, root cell membranes depolarized in few minutes, reaching very low Em values. This effect was transient and the initial membrane potential recovered totally within 6–8 h. Only the highest concentration used had an inhibitory effect on root respiration. Significant respiratory inhibition appeared after 2 h of exposure to Cd2+ and lasted for at least 4 h. In turn, membrane permeability increased in the presence of Cd2+ for at least 8 h, inducing K+ efflux from the roots. The relationship between these parameters and their possible involvement in lowered nutrient content in Cd2+-treated plants is discussed.
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    URL: http://dx.doi.org/10.1023/A:1004753521646
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    Natural abundance of 15N in actinorhizal plants and nodules (2000)
    Springer
    Plant and soil 219 (2000), S. 285-289 
    Details
    ISSN: 1573-5036
    Keywords: actinorhizal plants ; Frankia ; 15N natural abundance ; nitrogen fixation ; Parasponia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Substantial enrichment of some plant parts in 15N relative to the rest of the plant is unusual, but is found in the nitrogen-fixing nodules of many legumes. A range of actinorhizal plants was surveyed to determine whether the nodules of any of them are also substantially enriched in 15N. The nonlegume Parasponia, nodulated by a rhizobium, was also included. Four of the actinorhizal genera and Parasponia were grown in N-free culture, and three actinorhizal genera were collected from the field. Nodules of Parasponia, Casuarina and Alnus were15N enriched relative to other plant parts, but only Parasponia approached the degree of enrichment found in some legume nodules. The nodules of Datisca, Myrica, Elaeagnus, Shepherdia, and Coriaria were depleted in 15N. Thus many actinorhizal nodules are depleted in 15N compared to other plant parts and enrichment is modest when it does occur. Whole plant 15N content (δ15N) in four actinorhizal plants and Parasponia showed a relatively narrow range of −1.41 to −1.90. Hence regardless of the degree of nodule enrichment or depletion, whole plant 15N content appears to vary little in plants grown in N-free culture.
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    URL: http://dx.doi.org/10.1023/A:1004704209279
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    Ammonium in relation to proline accumulation in detached rice leaves (2000)
    Springer
    Plant growth regulation 30 (2000), S. 139-144 
    Details
    ISSN: 1573-5087
    Keywords: ammonium ; methionine sulfoximine ; Oryza sativa ; proline accumulation ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ammonium accumulation in relation to prolineaccumulation in detached rice leaves under stressconditions was investigated. Ammonium accumulation indark-treated detached rice leaves preceded prolineaccumulation. Ammonium accumulation caused by waterstress coincided closely with proline accumulation indetached rice leaves. Exogenous NH4Cl andmethionine sulfoximine (MSO), which caused anaccumulation of ammonium in detached rice leaves,increased proline content. It was found that prolinein NH4Cl- or MSO-treated rice leaves is lessutilized than in water-treated rice leaves (controls). These results are in agreement with the observationthat a decrease in proline utilization contributes tothe accumulation of proline in dark-treated and waterstressed rice leaves. Although ammonium contentincreased in Cd- and Cu-treated rice leaves, theincrease in ammonium content was only observed afterthe increase in proline content.
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    The inhibited xanthophyll cycle is responsible for the increase in sensitivity to low temperature photoinhibition in rice leaves fed with glutathione (2000)
    Springer
    Photosynthesis research 65 (2000), S. 107-114 
    Details
    ISSN: 1573-5079
    Keywords: antioxidants ; chilling ; chlorophyll fluorescence ; glutathione ; Oryza sativa ; photoinhibition ; xanthophyll cycle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Exposure of intact rice leaves to an irradiance of 1000 μmol m−2 s−1 at 6 °C for 2 h caused severe photoinhibition of Photosystem II. The rate and extent of photoinhbition were greatly exacerbated in leaves fed with 10 mM reduced glutathione (GSH) or 10 mM cysteine. Analyses of antioxidant enzyme activities as well as the application of protein synthesis inhibitors revealed that the increased sensitivity to photoinhibition following GSH feeding was not related to its effect on cellular antioxidant systems. On the other hand, feeding with GSH markedly suppressed the formation of zeaxanthin and antheraxanthin via the xanthophyll cycle and its associated nonradiative energy dissipation in leaves chilled in high light, suggesting that the stimulating effect of exogenous GSH on photoinhibition may be attributable to its action on the xanthophyll cycle. In vitro experiments using isolated thylakoids indicated that GSH is a weak inhibitor of violaxanthin deepoxidation. The possible implications of these results are discussed.
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    Effect of NaCl stress on H2O2 metabolism in rice leaves (2000)
    Springer
    Plant growth regulation 30 (2000), S. 151-155 
    Details
    ISSN: 1573-5087
    Keywords: ascorbate peroxidase ; catalase ; glutathione reductase ; glycolate oxidase ; hydrogen peroxide ; Oryza sativa ; peroxidase ; superoxide dismutase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The effect of NaCl stress on H2O2 metabolismin detached rice leaves was studied. NaCl (200 mM)treatment did not cause the accumulation ofH2O2 and resulted in no increase in lipidperoxidation and membrane leakage of leaf tissues. The activities of peroxidase, ascorbate peroxidase,superoxide dismutase, and glutathione reductase wereobserved to be greater in NaCl-stressed rice leavesthan in control leaves. However, glycolate oxidasewas lower in NaCl-treated rice leaves than in thecontrol leaves. There was no difference in catalaseactivity between NaCl and control treatments. Theseresults suggest that some antioxidant enzymes can beactivated in response to oxidative stress induced byNaCl.
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    A function of cyanobacterial mats in phosphorus-limited tropical wetlands (2000)
    Springer
    Hydrobiologia 431 (2000), S. 135-153 
    Details
    ISSN: 1573-5117
    Keywords: cyanobacteria ; wetlands ; biomass ; phosphorus ; nitrogen fixation ; alkaline phosphatase ; Belize
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cyanobacterial mats are important components of oligotrophic wetland ecosystems in the limestone-based regions of the Caribbean. Our goals were to: (1) Estimate the biomass and primary production of cyanobacterial mats, quantify the extent of nitrogen fixation and measure the activity of alkaline phosphatase (APA) in representative marshes of northern Belize; (2) Record changes in these variables following nutrient additions. The mat biomass ranged from 200 to 700 g m−2 AFDM, with the epipelon contributing up to 87% of the total. Tissue nitrogen was similar in all marshes (1.1–1.5%), while tissue phosphorus was extremely low (0.0055–0.0129%) and well correlated with the N:P ratio in water. Nitrogen fixation expressed as nitrogenase activity was high in some marshes (17.5 nmol C2H4 cm−2 h−1) and low (〈 5 nmol C2H4 cm−2 h−1) in others depending mainly on the proportion of heterocyst-forming cyanobacteria (Nostocales, Stigonematales) in the mat. Alkaline phosphatase activity was positively correlated with the N:P ratio of the mat. Experimental addition of phosphorus resulted in significant increase in primary production and nitrogen fixation while it suppressed the APA activity. The presented data clearly showed that oligotrophic marshes of northern Belize are strongly P limited. Increased input of phosphorus would profoundly change their structure and functions.
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    Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea (2000)
    Springer
    Plant molecular biology 43 (2000), S. 59-66 
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    ISSN: 1573-5028
    Keywords: Oryza sativa ; resistance ; rice blast ; transgenic rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Rir1b gene of rice (Oryza sativa) is one of a set of putative defense genes whose transcripts accumulate upon inoculation of rice with the non-host pathogen Pseudomonas syringae pv. syringae. It belongs to a family of genes encoding small extracellular proteins so far only identified in cereals. To assess the function of the Rir1b gene in rice blast resistance, it was placed under the control of the CaMV 35S promoter and transferred into rice plants of the japonica variety Taipei 309 by biolistic transformation of immature embryos. Two out of 12 hygromycin-resistant regenerated plants (OE1 and OE3) were fertile. DNA gel blot analysis suggested that these two T0 plants were independent transformants, each of which had stably incorporated one complete copy of the transgene into the genome. In addition, the OE1 plant appeared also a contain a rearranged copy or incomplete copy. T1 plants homozygous for the transgene were identified by DNA gel blot analysis of individual T2 progeny and further propagated. Expression analysis of the transgene showed that the transgene was active both in T1 plants and homozygous decendants. Challenge inoculation of homozygous transgenic plants with Magnaporthe grisea, the causal agent of rice blast disease, revealed that both independent transgenic lines were more resistant than the untransformed wild type, suggesting that over-expression of the Rir1b gene confers partial resistance against this important pathogen.
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    A transgenic rice cell lineage expressing the oat arginine decarboxylase (adc) cDNA constitutively accumulates putrescine in callus and seeds but not in vegetative tissues (2000)
    Springer
    Plant molecular biology 43 (2000), S. 537-544 
    Details
    ISSN: 1573-5028
    Keywords: arginine decarboxylase ; maize ubiquitin 1 promoter ; Oryza sativa ; polyamines.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We introduced the oat adc cDNA into rice under the control of the constitutive maize ubiquitin 1 promoter. We studied molecularly and biochemically sixteen independent transgenic plant lines. Significant increases in mRNA levels, ADC enzyme activity and polyamines were measured in transgenic callus. These increases were not maintained in vegetative tissue or seeds in regenerated plants, with the exception of one lineage. This particular lineage showed very significant increases in putrescine preferentially in seeds (up to 10 times compared to wild type and controls transformed with the hpt selectable marker alone). We have demonstrated that in cereals such as rice, over-expression of the oat adc cDNA results in increased accumulation of polyamines at different stages of development. We have also demonstrated that strong constitutive promoters, such as the maize ubiquitin 1 promoter, are sufficient to facilitate heritable high-level polyamine accumulation in seed. Our results demonstrate that by screening adequate numbers of independently derived transgenic plants, it is possible to identify those individuals which express a desired phenotype or genotype.
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    URL: http://dx.doi.org/10.1023/A:1006480304879
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    Isolation and characterization of nif::kanamycin and nitrogen fixation proficient Azotobacter vinelandii strain, and its implication on the status of multiple chromosomes in Azotobacter (2000)
    Springer
    Genetica 110 (2000), S. 101-107 
    Details
    ISSN: 1573-6857
    Keywords: Azotobacter ; kanamycin resistance ; nitrogen fixation ; nifDK ; polyploidy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Several lines of experimental analyses on the ploidy status of Azotobacter vinelandii genome lead to the conclusion that it contains more than 40 copies of its chromosome and therefore it is a polyploid organism. The genetic evidence argues against the existence of polyploidy in these cells since the segregation pattern of genetic markers under lack of selection pressure mimic that of haploids. However, when A. vinelandii was made Nif− by inserting a kanamycin resistance marker gene in the nifDK sequence and the cells were selected for kanamycin resistance and Nif+ phenotype, we were able to score colonies that are both kanamycin resistant and Nif+. Therefore, when the cells were subjected to forced double selection of the same locus, they behaved as if they carried at least two chromosomes, one carrying the kanamycin resistance marker in the nifDK genes and the other carrying the intact nifDK genes. These analyses suggested that at least a diploidy status can be induced in these cells under selection pressure.
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    Isolation of infective and effective Frankia strains from root nodules of Alnus acuminata (Betulaceae) (2000)
    Springer
    World journal of microbiology and biotechnology 16 (2000), S. 647-651 
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    ISSN: 1573-0972
    Keywords: Alnus acuminata ; Frankia ; nitrogen fixation ; symbiosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Two Frankia strains were isolated from root nodules of Alnus acuminata collected in the Tucumano-oranense forest, Argentina. Monosporal cultures were obtained by plating a spore suspension of each strain and isolating a single colony. The strains (named AacI and AacIII) showed branched mycelia with polymorphic sporangia and NIR-vesicles. They differed in their ability to use carbon sources: the AacI strain grew well on pyruvate, while the AacIII strain grew on mineral medium supplemented with glucose or, alternatively, with sucrose. The two strains were sensitive to oleandomycin, erythromycin, kanamycin, penicillin G, streptomycin and chloramphenicol at 5 μg/ml. The AcIII strain exhibited a moderate resistance to rifampicin, ampicillin and vancomycin. The nitrogenase activity in vitro of the strains was significantly higher in basal medium without nitrogen than that determined in the presence of ammonium chloride. Both strains were infective on seedlings of Alnus glutinosa, inducing an approximately similar percentage of nodulated plants (80%), although strain AacIII produced a higher number of nodules per plant (≤15) than strain AacI (≤6). They were also effective for nitrogen fixation in planta, determined by the acetylene reduction assay.
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    Two isoforms of soluble auxin receptor in rice (Oryza sativa L.) plants: Binding property for auxin and interaction with plasma membrane H+-ATPase (2000)
    Springer
    Plant growth regulation 32 (2000), S. 143-150 
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    ISSN: 1573-5087
    Keywords: auxin binding isotherm ; auxin receptor ; dose response curve ; H+-ATPase ; iIndole-3-acetic acid ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract An auxin receptor protein, isolated from the soluble fractionsof rice shoots and roots, was characterised in terms of the affinity andspecificity for IAA and the modulating effect onH+-ATPase of plant plasma membrane. The receptor proteingives a biphasic binding isotherm for IAA, indicating the existence ofthe primary and secondary binding sites. The predominant isoform of thereceptor in roots shows much higher affinity to IAA compared with thatin shoots. Being monomeric protein with about the same molecular mass(57–58 kDa) and showing a similar chromatographic behaviour, bothisoforms mediate IAA-induced modulation of the plasma membraneH+-ATPase in the respective IAA concentration rangesseparated by ca. 3 orders of magnitudes(10-10–10-7 M vs.10-7–10-4 M). Analysis of kinetic data ofthe H+-ATPase activity revealed that the receptor perse functions as an effector of the enzyme, causing a decrease inKm and an increase in Vmax through protein-proteininteraction at a 1:1 ratio. Further, it appeared that, while IAAdoes not affect by itself the kinetic parameters of theH+-ATPase, the auxin exerts its effect via thereceptor, biphasically regulating the efficiency of the effectormolecule probably by inducing two-phase conformational changes thatinvolve IAA binding to two separate binding sites. It was also foundthat other active auxins examined, such as indole-3-propionic acid,1-naphthalene acetic acid and 2,4-dichlorophenoxyacetic acid, do notwork together with the receptor to elicit the same response of theH+-ATPase as seen with IAA.
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    An improved technique for culture of rice panicles (2000)
    Springer
    Plant cell, tissue and organ culture 60 (2000), S. 55-60 
    Details
    ISSN: 1573-5044
    Keywords: apoplastic assimilation ; culture medium ; grain physiology ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract An improved technique for long-term culture of rice caryopses is necessary for physiological and genetic studies. Panicles of three rice (Oryza sativa) cultivars `Lemont', `Gummo-byeu' and `Hwasung-byeu' were cultured in liquid media with combinations of light versus dark, panicle position, nitrogen level (5-40 mM), and sucrose level (29–351 mM). Grain growth was increased when panicles were positioned horizontally, partially submerged in the media, owing to greater media contact and apoplastic uptake as observed by fluorescent dyes. The optimal media assimilate supply included 175 mM sucrose and 5 mM nitrogen. Grain fill occurred for up to four weeks; grain dry weight reached 80% of that on intact plants, with 50% germination. This technique should allow for future physiological studies with rice or other panicle-bearing species.
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    Salinity increases CO2 assimilation but reduces growth in field-grown, irrigated rice (2000)
    Springer
    Plant and soil 218 (2000), S. 1-10 
    Details
    ISSN: 1573-5036
    Keywords: dry matter reduction ; leaf chlorophyll content ; leaf sodium uptake ; Oryza sativa ; photosynthesis ; salinity ; season effects
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Salinity is a major yield-reducing factor in coastal and arid, irrigated rice production systems. Salt tolerance is a major breeding objective. Three rice cultivars with different levels of salt tolerance were studied in the field for growth, sodium uptake, leaf chlorophyll content, specific leaf area (SLA), sodium concentration and leaf CO2 exchange rates (CER) at photosynthetic active radiation (PAR)-saturation. Plants were grown in Ndiaye, Senegal, at a research station of the West Africa Rice Development Association (WARDA), during the hot dry season (HDS) and the wet season (WS) 1994 under irrigation with fresh or saline water (flood water electrical conductivity = 3.5 mS cm-1). Relative leaf chlorophyll content (SPAD method) and root, stem, leaf blade and panicle dry weight were measured at weekly intervals throughout both seasons. Specific leaf area was measured on eight dates, and CER and leaf sodium content were measured at mid-season on the first (topmost) and second leaf. Salinity reduced yields to nearly zero and dry-matter accumulation by 90% for the susceptible cultivar in the HDS, but increased leaf chlorophyll content and CER at PAR- saturation. The increase in CER, which was also observed in the other cultivars and seasons, was explained by a combination of two hypotheses: leaf chlorophyll content was limited by the available N resources in controls, but not in salt-stressed plants; and the sodium concentrations were not high enough to cause early leaf senescence and chlorophyll degradation. The growth reductions were attributed to loss of assimilates (mechanisms unknown) that must have occurred after export from the sites of assimilation. The apparent, recurrent losses of assimilates, which were between 8% and 49% according to simulation with the crop model for potential yields in irrigated rice, ORYZA S, might be partly due to root decomposition and exudation. Possibly more importantly, energy-consuming processes, such as osmoregulation, interception of sodium and potassium from the transpiration stream in leaf sheaths and their subsequent storage, drained the assimilate supply.
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    Effects of increased atmospheric CO2, temperature, and soil N availability on root exudation of dissolved organic carbon by a N-fixing tree (Robinia pseudoacacia L.) (2000)
    Springer
    Plant and soil 222 (2000), S. 191-202 
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    ISSN: 1573-5036
    Keywords: CO2 enrichment ; carbon storage ; climate change ; dissolved organic carbon ; nitrogen fixation ; root exudate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Root exudation has been hypothesized as one possible mechanism that may lead to increased inputs of organic C into the soil under elevated atmospheric CO2, which could lead to greater long-term soil C storage. In this study, we analyzed exudation of dissolved organic C from the roots of seedlings of the N-fixing tree Robinia pseudoacacia L. in a full factorial design with 2 CO2 (35.0 and 70.0 Pa) × 2 temperature (26° and 30 °C during the day) × 2 N fertilizer (0 and 10.0 mM N concentration) levels. We also analyzed the decomposition rates of root exudate to estimate gross rates of exudation. Elevated CO2 did not affect root exudation of organic C. A 4 °C increase in temperature and N fertilization did, however, significantly increase organic C exudation rates. Approximately 60% of the exudate decomposed relatively rapidly, with a turnover rate of less than one day, while the remaining 40% decomposed more slowly. These results suggest that warmer climates, as predicted for the next century, may accelerate root exudation of organic C, which will probably stimulate rapid C cycling and may make a minor contribution to intermediate to more long-term soil C storage. However, as these losses to root exudation did not exceed 1.2% of the net C fixed by Robinia pseudoacacia, root exudation of organic C appears to have little potential to contribute to long-term soil C sequestration.
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    Due to symbiotic N2 fixation, five years of elevated atmospheric pCO2 had no effect on the N concentration of plant litter in fertile, mixed grassland (2000)
    Springer
    Plant and soil 224 (2000), S. 43-50 
    Details
    ISSN: 1573-5036
    Keywords: elevated CO2 ; FACE ; Lolium perenne L. ; N concentration ; nitrogen fixation ; plant litter ; species composition ; Trifolium repens L
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Experimental findings indicate that, in terrestrial ecosystems, nitrogen cycling changes under elevated partial pressure of atmospheric CO2 (pCO2). It was suggested that the concentration of N in plant litter as well as the amount of litter are responsible for these changes. However, for grassland ecosystems, there have been no relevant data available to support this hypothesis. Data from five years of the Swiss FACE experiment show that, under fertile soil conditions in a binary plant community consisting of Lolium perenne L. and Trifolium repens L., the concentration of litter N does not change under elevated atmospheric pCO2; this applies to harvest losses, stubble, stolons and roots as the sources of litter. This is in strong contrast to the CO2 response of L. perenne swards without associated legumes; in this case the above-ground concentration of biomass N decreased substantially. Increased symbiotic N2 fixation in T. repens nodules and a greater proportion of the N-rich T. repens in the community are regarded as the main mechanisms that buffer the increased C introduction into the ecosystem under elevated atmospheric pCO2. Our data also suggest that elevated atmospheric pCO2 results in greater amounts of litter, mainly due to increased root biomass production. This study indicates that, in a fertile grassland ecosystem with legumes, the concentration of N in plant litter is not affected by elevated atmospheric pCO2 and, thus, cannot explain CO2-induced changes in the cycling of N.
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    Greenhouse and field trials of the bacterial antagonists in pelletformulations to suppress sheath blight of rice caused by Rhizoctoniasolani (2000)
    Springer
    BioControl 45 (2000), S. 245-256 
    Details
    ISSN: 1573-8248
    Keywords: biological control ; Oryza sativa ; rice sheath blight
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Bacterial formulations, produced using both Bacillus megaterium andB. pumilus individually with pharmaceutical technology, were testedunder both greenhouse and field conditions. In the greenhouse testing,some bacterial formulations, for instance For 7 minus Lac and For 16 minusLac, performed as well as freshly prepared bacterial antagonists insuppress sheath blight disease. In the field testing, For 16 minus Lac wasnot effective in suppressing sheath blight development. Failure of the For16 minus Lac to suppress sheath blight disease in the field trial may be dueto the dilution and inactivation of antibiotics produced by B.megaterium in the aquatic environment in the rice field and climaticconditions during the formulation application.
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    Amelioration of NaCl Stress by Arginine in Rice Seedlings: Changes in Endogenous Polyamines (2000)
    Springer
    Biologia plantarum 43 (2000), S. 419-422 
    Details
    ISSN: 1573-8264
    Keywords: Oryza sativa ; putrescine ; spermidine ; spermine ; salt stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Effects of NaCl (0.1 – 0.2 M) alone or in combination with 1 mM arginine on growth and endogenous polyamine (PA) content have been observed in two cultivars of rice differing in NaCl stress tolerance. The germination, seedlings fresh mass and water content decreased with increase in salinity in both the cultivars. This inhibition was partially alleviated by application of arginine. Cv. CSR-27 exhibited relatively better germination than cv. Bas-370 at different salinities. Total PA content increased in both the cultivars under NaCl stress alone and in combination with arginine. Putrescine to spermidine and spermine ratio was higher in NaCl-treated seedlings being more in cv. Bas-370 as compared to cv. CSR-27 and the ratio reversed to almost control level when arginine was applied along with NaCl.
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    In Vitro Selection for Salt Tolerance in Rice (2000)
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    Biologia plantarum 43 (2000), S. 477-480 
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    ISSN: 1573-8264
    Keywords: callus growth ; Oryza sativa ; proline ; protein ; salt stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In six cultivars of rice (Oryza sativa L.), Pusa Basmati 1, Basmati 370, Type III, Pant Dhan 4, CSR 10 and Pokkali, embryogenic callus growth, plant regeneration, and proline and total protein contents were studied under salt stress (on agar solidified media containing 0, 0.5, 1.0, 1.5 and 2.0 % NaCl). Four weeks after inoculation the callus fresh mass decreased with increasing salt concentration in all the six cultivars. The regeneration frequency in salt stressed callus was also lower as compared to control. 15 d and 30 d after inoculation proline content increased several fold whereas total protein content decreased markedly with increase in salt concentration.
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    Involvement of Lipid Peroxidation in Water Stress-Promoted Senescence of Detached Rice Leaves (2000)
    Springer
    Biologia plantarum 43 (2000), S. 141-145 
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    ISSN: 1573-8264
    Keywords: antioxidative enzymes ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Role of lipid peroxidation and antioxidative enzymes (catalase, peroxidase, superoxide dismutase, ascorbate peroxidase and glutathione reductase) in water stress-promoted senescence of detached rice leaves was investigated. The senescence was followed by measuring the decrease in protein content. Increased lipid peroxidation was closely correlated with senescence in water stressed leaves. Decrease in superoxide dismutase activity was evident 8 h after beginning of water stress. However, decreased catalase, peroxidase, and ascorbate peroxidase activity was observed only when senescence was observed. Glutathione reductase was not affected by water stress. Free radical scavengers retarded water stress-enhanced senescence.
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    Proline, Ornithine, Arginine and Glutamic Acid Contents in Detached Rice Leaves (2000)
    Springer
    Biologia plantarum 43 (2000), S. 305-307 
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    ISSN: 1573-8264
    Keywords: amino acids ; Oryza sativa ; protein ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effects of water stress on the contents of proline, ornithine, arginine and glutamic acid in detached rice leaves were examined. In water stressed leaves, the content of proline was elevated to a content approximately 8-, 14- and 17-fold higher than in control leaves after 4, 8 and 12 h, respectively. We also observed that omithine and arginine contents were much higher under water stress than in control leaves. However, the content of glutamic acid in water stressed leaves was higher after 4 and 8 h and lower after 12 h than that in control leaves.
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    The Relation between Accumulation of Abscisic Acid and Proline in Detached Rice Leaves (2000)
    Springer
    Biologia plantarum 43 (2000), S. 301-304 
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    ISSN: 1573-8264
    Keywords: Oryza sativa ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The relation between abscisic acid (ABA) and proline accumulation was investigated in detached rice (Oryza sativa L.) leaves. In darkness, proline content increased about 2-, 2,5- and 6-fold after 24, 48 and 72 h. ABA content reached maximum after 48 h. In the light, proline content remained almost unchanged until 48 h and subsequently increased slightly. ABA content in the light was lower than in darkness, but the maximum was also after 48 h. During 12-h exposure to decreased air humidity, proline content gradually increased, but ABA content increased about 25-fold after 4 h and declined thereafter. Exogenous application of ABA resulted in an increase in proline content in detached rice leaves under both light and darkness.
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    Regeneration of fertile plants from isolated zygotes of rice (Oryza sativa) (1999)
    Springer
    Plant cell reports 19 (1999), S. 128-132 
    Details
    ISSN: 1432-203X
    Keywords: Key words Zygote ; Egg cell ; Plant regeneration ; Individual culture ; Rice ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A simple mechanical method has been developed which allows the routine isolation of unfertilized and fertilized egg cells from ovules of Japonica and Indica rice varieties. In the experiments described, the majority of the egg cells and zygotes survived the isolation procedure when the donor plants were in a vigorous state. About 40% of the surviving zygotes underwent sustained development when cultured in Millicell inserts with a non-morphogenic rice feeder-cell culture. Nearly all zygote-derived callus cultures regenerated multiple shoots, which could be subsequently rooted with high efficiency. Zygote-derived plantlets matured to fertile plants when transplanted to soil. So far, about 80 independent plants each from the Japonica variety 'Taipei309' and the Indica variety 'IR58' have been regenerated. The potential of this single-cell regeneration system for marker gene-free transformation is discussed.
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    URL: http://dx.doi.org/10.1007/s002990050722
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    Promoter region of Ory s 1, the major rice pollen allergen gene (1999)
    Springer
    Sexual plant reproduction 12 (1999), S. 125-126 
    Details
    ISSN: 1432-2145
    Keywords: Key words Gene regulation ; Ory s 1 ; Oryza sativa ; Pollen allergen ; Promoter ; Rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1007/s004970050182
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    Characterization of β-amylase and its deficiency in various rice cultivars (1999)
    Springer
    Theoretical and applied genetics 98 (1999), S. 32-38 
    Details
    ISSN: 1432-2242
    Keywords: Key words β-amylase-deficient mutant ; Oryza sativa ; Germination ; Direct seedling
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  β-Amylase deficiency in various cultivars of rice was examined at the molecular level. Using an antibody against β-amylase purified from germinating seeds of rice, we were able to demonstrate the expression and organization of the β-amylase gene in normal and deficient cultivars. Although β-amylase is a starch-hydrolyzing enzyme, as is α-amylase, the β-amylase protein/gene is expressed differently from the α-amylase protein/gene; i.e. (1) β-amylase is synthesized only in aleurone cells, (2) the enzyme production in the embryo-less half-seeds is not under hormonal control. We identified some cultivars of rice that are deficient for β-amylase activity. We present new evidence that synthesis is blocked at the level of mRNA synthesis in the deficient cultivars. The usefulness of β-amylase as a crop trait is also discussed.
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    URL: http://dx.doi.org/10.1007/s001220051036
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    Intergeneric somatic hybrids of rice [Oryza sativa L. (+) Porteresia coarctata (Roxb.) Tateoka] (1999)
    Springer
    Theoretical and applied genetics 99 (1999), S. 570-577 
    Details
    ISSN: 1432-2242
    Keywords: Key words Rice ; Oryza sativa ; Porteresia coarctata ; Somatic hybridisation ; Flow cytometry ; Random amplification of polymorphic DNA (RAPD) ; Genome in situ hybridisation (GISH) ; Halophyte ; Chromosomes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Somatic hybrid plants were obtained following the electrofusion of rice (Oryza sativa L. cv ’Taipei 309’, 2n = 2x = 24) cell suspension–derived protoplasts with non-dividing leaf protoplasts of Porteresia coarctata (2n = 4x = 48), a saline-tolerant wild species. Fusion-treated protoplasts were plated on the surface of cellulose nitrate filter membranes, overlaying Lolium multiflorum nurse cells. The nurse cells were embedded in KPR medium containing 0.5 mg l−1 2,4–dichlorophenoxyacetic acid and semi-solidified with SeaPlaque agarose. Putative somatic hybrid cell colonies were selected on the basis of their growth, whereby faster growing colonies were transferred preferentially to MS-based medium with 2.0 mg l−1 kinetin, 0.5 mg l−1α-naphthaleneacetic acid, 30 g l−1 sucrose and 4.0 g l−1 SeaKem agarose to induce shoot regeneration. One hundred and nineteen regenerated plants were micropropagated clonally on MS-based medium containing 2.0 mg l−1 6–benzylaminopurine, 50 g l−1 sucrose and 4.0 g l−1 SeaKem agarose, prior to DNA extraction of plant samples. Putative somatic hybrids were initially identified by RAPD analysis, and 8 plant lines were selected for further investigation by flow cytometric ploidy determination and cytology. Plants of one line had an allohexaploid chromosome complement (2n = 6x = 72) and, following examination of its vegetative clones by GISH, were confirmed as somatic hybrids containing full chromosome complements of both O. sativa and P. coarctata.
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    URL: http://dx.doi.org/10.1007/s001220051270
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    Identification and characterization of novel retrotransposons of the gypsy type in rice (1999)
    Springer
    Molecular genetics and genomics 260 (1999), S. 593-602 
    Details
    ISSN: 1617-4623
    Keywords: Key words Retrotransposon ; gypsy ; Oryza sativa ; LTR ; orf0
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We found that two DNA fragments, which were obtained from Oryza sativa L cv. IR36 by PCR using degenerate primers designed for amplification of a rice gene, showed homology with the rt gene encoding reverse transcriptase of the Drosophila retrotransposon gypsy. We named the element from which they originated RIRE3 (for rice retrotransposon No. 3) and analyzed it further by isolating various clones containing segments of RIRE3. Nucleotide sequencing of the clones revealed that RIRE3 has LTRs (2316 bp) and that the internal sequence (5775 bp) includes a large ORF with gag and pol regions; the pol region includes the rt gene as well as the int gene encoding integrase in this order, as in gypsy. Interestingly, the region upstream of gag in RIRE3 contained another open reading frame, here called orf0, which does not exist in gypsy or in other retrotransposons related to it. In the course of characterizing RIRE3, we obtained a further clone, which showed less homology with the pol region of RIRE3. This clone was found to be derived from another gypsy-type retrotransposon (named RIRE8) containing the LTR sequence and orf0 both of which were only weakly homologous to that in RIRE3. Further characterization of RIRE8 revealed that there were actually two subtypes of RIRE8 (named RIRE8A and RIRE8B), which show little homology to each other in the orf0 region. Although the LTRs of RIRE3 and RIRE8 elements show very weak homology with each other, there exists a conserved sequence at their termini. We therefore carried out PCR using primers which hybridize to the rt gene of RIRE3, and total genomic DNA from various monocot and dicot plants as templates, and found that a family of RIRE3 elements was present in all plants tested.
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    URL: http://dx.doi.org/10.1007/s004380050933
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    Different Patterns of Host Genes are Induced in Rice by Pseudomonas syringae, a Biological Inducer of Resistance, and the Chemical Inducer Benzothiadiazole (BTH) (1999)
    Springer
    European journal of plant pathology 105 (1999), S. 659-665 
    Details
    ISSN: 1573-8469
    Keywords: Magnaporthe grisea ; Pseudomonas syringae pv. syringae ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Rice seedlings treated with the synthetic compound benzo(1,2,3)thiadiazole-7-carbothioic acid S-methyl ester (BTH) acquired resistance to subsequent attack by the rice blast fungus Magnaporthe grisea (Hebert) Barr. BTH (trade name Bion™) has been released to the market as a plant protecting agent for rice. Here, we analysed the pattern of expressed genes in rice plants treated with BTH, and compared this pattern with those induced by the formerly discovered resistance inducer 2,6-dichloroisonicotinic acid (INA) and by Pseudomonas syringae pv. syringae, a non-host pathogen inducing a hypersensitive response. Both INA and BTH induced similar patterns of genes, suggesting that these compounds are functional analogues. In contrast, the patterns induced by the chemical inducers and by P. syringae were clearly dissimilar.
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    URL: http://dx.doi.org/10.1023/A:1008791223608
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    Ecosystem constraints to symbiotic nitrogen fixers: A simple model and its implications (1999)
    Springer
    Biogeochemistry 46 (1999), S. 179-202 
    Details
    ISSN: 1573-515X
    Keywords: carbon dioxide ; grazing ; nitrogen fixation ; nitrogen limitation ; phosphorus ; shade
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract The widespread occurrence ofN limitation to net primary production (NPP) and other ecosystem processes, despite the ubiquitous occurrence ofN-fixing symbioses, remains a significant puzzle in terrestrial ecology. We describe a simple simulation model for an ecosystem containing a generic nonfixer and a symbioticN fixer, based on: (1) a higher cost forN acquisition byN fixers than nonfixers; (2) growth of fixers and fixation ofN only when lowN availability limits the growth of nonfixers, and other resources are available; and (3) losses of fixedN from the system only when the quantity of availableN exceeds plant and microbial demands. Despite the disadvantages faced by theN fixer under these conditions,N fixation and loss adjustN availability close to the availability of other resources, and biomass and NPP in this simple model can be substantially but only transientlyN limited. We then modify the model by adding: (1) losses ofN in forms other than excess availableN (e.g., dissolved organicN, trace gases produced by nitrification); and (2) constraints to the growth and activity ofN fixers imposed by differential effects of shading,P limitation, and grazing. The combination of these processes is sufficient to describe an open system, with input from both precipitation andN fixation, that is nevertheless stronglyN-limited at equilibrium. This model is useful for exploring causes and consequences of constraints toN fixation, and hence ofN limitation, and we believe it will also be useful for evaluating howN fixation and limitation interact with elevatedCO 2 and other components of global enviromental change.
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    URL: http://dx.doi.org/10.1007/BF01007579
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    Do top-down and bottom-up controls interact to exclude nitrogen-fixing cyanobacteria from the plankton of estuaries? An exploration with a simulation model (1999)
    Springer
    Biogeochemistry 46 (1999), S. 203-231 
    Details
    ISSN: 1573-515X
    Keywords: Baltic Sea ; cyanobacteria ; estuaries ; grazing ; iron ; lakes ; molybdenum ; nitrogen ; nitrogen fixation ; nitrogen limitation ; Zooplankton
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract Explaining the nearly ubiquitous absence of nitrogen fixation by planktonic organisms in strongly nitrogen-limited estuaries presents a major challenge to aquatic ecologists. In freshwater lakes of moderate productivity, nitrogen limitation is seldom maintained for long since heterocystic, nitrogen-fixing cyanobacteria bloom, fix nitrogen, and alleviate the nitrogen limitation. In marked contrast to lakes, this behavior occurs in only a few estuaries worldwide. Primary production is limited by nitrogen in most temperate estuaries, yet no measurable planktonic nitrogen fixation occurs. In this paper, we present the hypothesis that the absence of planktonic nitrogen fixers from most estuaries is due to an interaction of bottom-up and top-down controls. The availability of Mo, a trace metal required for nitrogen fixation, is lower in estuaries than in freshwater lakes. This is not an absolute physiological constraint against the occurrence of nitrogen-fixing organisms, but the lower Mo availability may slow the growth rate of these organisms. The slower growth rate makes nitrogen-fixing cyanobacteria in estuaries more sensitive to mortality from grazing by Zooplankton and benthic organisms. We use a simple, mechanistically based simulation model to explore this hypothesis. The model correctly predicts the timing of the formation of heterocystic, cyanobacterial blooms in freshwater lakes and the magnitude of the rate of nitrogen fixation. The model also correctly predicts that high Zooplankton biomasses in freshwaters can partially suppress blooms of nitrogen-fixing cyanobacteria, even in strongly nitrogen-limited lakes. Further, the model indicates that a relatively small and environmentally realistic decrease in Mo availability, such as that which may occur in seawater compared to freshwaters due to sulfate inhibition of Mo assimilation, can suppress blooms of heterocystic cyanobacteria and prevent planktonic nitrogen fixation. For example, the model predicts that at a Zooplankton biomass of 0.2 mg l−1, cyanobacteria will bloom and fix nitrogen in lakes but not in estuaries of full-strength seawater salinity because of the lower Mo availability. Thus, the model provides strong support for our hypothesis that bottom-up and top-down controls may interact to cause the absence of planktonic nitrogen fixation in most estuaries. The model also provides a basis for further exploration of this hypothesis in individual estuarine systems and correctly predicts that planktonic nitrogen fixation can occur in low salinity estuaries, such as the Baltic Sea, where Mo availability is greater than in higher salinity estuaries.
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    URL: http://dx.doi.org/10.1007/BF01007580
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    The presence of nitrogen fixing legumes in terrestrial communities: Evolutionary vs ecological considerations (1999)
    Springer
    Biogeochemistry 46 (1999), S. 233-246 
    Details
    ISSN: 1573-515X
    Keywords: biogeography ; Fabaceae ; legumes ; nitrogen fixation ; nutrient limitation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract Nitrogen is often a limiting factor to net primary productivity (NPP) and other processes in terrestrial ecosystems. In most temperate freshwater ecosystems, when nitrogen becomes limiting to NPP, populations of N-fixing cyanobacteria experience a competitive advantage, and begin to grow and fix nitrogen until the next most limiting resource is encountered; typically phosphorus or light. Why is it that N-fixing plants do not generally function to overcome N limitation in terrestrial ecosystems in the same way that cyanobacteria function in aquatic ecosystems? To address this question in a particular ecosystem, one must first know whether the flora includes a potential set of nitrogen fixers. I suggest that the presence or absence of N-fixing plant symbioses is foremost an evolutionary consideration, determined to a large extent by constraints on the geographical radiation of woody members of the family Fabaceae. Ecological factors such as competition, nutrient deficiencies, grazing and fire are useful to explain the success of N-fixing plants only when considered against the geographical distribution of potential N-fixers.
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    URL: http://dx.doi.org/10.1023/A:1006141221938
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    Do top-down and bottom-up controls interact to exclude nitrogen-fixing cyanobacteria from the plankton of estuaries? An exploration with a simulation model (1999)
    Springer
    Biogeochemistry 46 (1999), S. 203-231 
    Details
    ISSN: 1573-515X
    Keywords: Baltic Sea ; cyanobacteria ; estuaries ; grazing ; iron ; lakes ; molybdenum ; nitrogen ; nitrogen fixation ; nitrogen limitation ; zooplankton
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract Explaining the nearly ubiquitous absence of nitrogen fixation by planktonic organisms in strongly nitrogen-limited estuaries presents a major challenge to aquatic ecologists. In freshwater lakes of moderate productivity, nitrogen limitation is seldom maintained for long since heterocystic, nitrogen-fixing cyanobacteria bloom, fix nitrogen, and alleviate the nitrogen limitation. In marked contrast to lakes, this behavior occurs in only a few estuaries worldwide. Primary production is limited by nitrogen in most temperate estuaries, yet no measurable planktonic nitrogen fixation occurs. In this paper, we present the hypothesis that the absence of planktonic nitrogen fixers from most estuaries is due to an interaction of bottom-up and top-down controls. The availability of Mo, a trace metal required for nitrogen fixation, is lower in estuaries than in freshwater lakes. This is not an absolute physiological constraint against the occurrence of nitrogen-fixing organisms, but the lower Mo availability may slow the growth rate of these organisms. The slower growth rate makes nitrogen-fixing cyanobacteria in estuaries more sensitive to mortality from grazing by zooplankton and benthic organisms. We use a simple, mechanistically based simulation model to explore this hypothesis. The model correctly predicts the timing of the formation of heterocystic, cyanobacterial blooms in freshwater lakes and the magnitude of the rate of nitrogen fixation. The model also correctly predicts that high zooplankton biomasses in freshwaters can partially suppress blooms of nitrogen-fixing cyanobacteria, even in strongly nitrogen-limited lakes. Further, the model indicates that a relatively small and environmentally realistic decrease in Mo availability, such as that which may occur in seawater compared to freshwaters due to sulfate inhibition of Mo assimilation, can suppress blooms of heterocystic cyanobacteria and prevent planktonic nitrogen fixation. For example, the model predicts that at a zooplankton biomass of 0.2 mg l−1, cyanobacteria will bloom and fix nitrogen in lakes but not in estuaries of full-strength seawater salinity because of the lower Mo availability. Thus, the model provides strong support for our hypothesis that bottom-up and top-down controls may interact to cause the absence of planktonic nitrogen fixation in most estuaries. The model also provides a basis for further exploration of this hypothesis in individual estuarine systems and correctly predicts that planktonic nitrogen fixation can occur in low salinity estuaries, such as the Baltic Sea, where Mo availability is greater than in higher salinity estuaries.
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    URL: http://dx.doi.org/10.1023/A:1006189121030
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    Molecular characterization of mitotic cyclins in rice plants (1999)
    Springer
    Molecular genetics and genomics 262 (1999), S. 230-238 
    Details
    ISSN: 1617-4623
    Keywords: Key words Cell cycle ; Cell division ; Cyclin ; Mitosis ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Cyclins are known to activate cyclin-dependent protein kinases, which are essential for cell cycle progression in eukaryotes. We isolated full-length cDNAs encoding rice mitotic cyclins named CycA1;os;1 and CycB2;os;1, which are related to A- and B-type cyclins, respectively, from animals. To characterize the function of these mitotic cyclins, as well as that of another B-type cyclin, CycB2;os;2, each cDNA was introduced into yeast cells. When cDNAs encoding CycA1;os;1, CycB2;os;1 or CycB2;os;2 were overexpressed in the yeast mutant DL1, which is deficient in G1 cyclins, the mutant phenotype was rescued, indicating that these mitotic cyclins are functional in yeast cells. When the cDNA encoding CycB2;os;1 was expressed in the wild-type yeast strain, the cells lost the ability to grow, whereas the expression of either cycA1;os;1 or cycB2;os;2 did not inhibit growth. In situ hybridization of these mitotic cyclin genes with rice root apices and counterstaining of chromosomes with a DNA-specific dye revealed that cycA1;os;1 is expressed from the G2 phase to the early M phase, while transcripts of cycB2;os;1 and cycB2;os;2 accumulated until the end of mitosis. Our results indicate that these B2-type cyclins may be involved in the control of mitosis, in combination with a G2/M-phase CDK.
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    URL: http://dx.doi.org/10.1007/s004380051079
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    Senescence program in rice (Oryza sautiva L.) leaves: Analysis of the blade of the second leaf at the tissue and cellular levels (1999)
    Springer
    Protoplasma 207 (1999), S. 222-232 
    Details
    ISSN: 1615-6102
    Keywords: Chloroplast DNA ; DNA degradation ; Oryza sativa ; Leaf ; Senescence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Previously, we showed that all greening mesophyll cells in the coleoptiles of rice (Oryza sauva L. cv. Nippon-bare) follow the identical program of senescence, which features the early degradation of chloroplast DNA (cpDNA) and subsequent nuclear condensation and disorganization. Following the coleoptile study, we analyzed the senescence-associated changes in the blade of the second leaf of rice at the tissue and cellular levels. Under the experimental conditions, the second leaf started to elongate rapidly 2 days after sowing and emerged on day 3. The blade of the second leaf completed its growth on day 4, although the sheath continued to grow until day 7. The amount of soluble protein and chlorophyll (Chl) per blade reached a maximum on day 7, and then declined. When blades were divided into three parts (the tip, mid-region, and base), levels of both soluble protein and Chl in the tip segment peaked earlier and decreased at a faster rate than in the other parts, demonstrating a longitudinal gradient of senescence from the tip to the base of the blade. In cross sections through the center of the tip and base segments, all the mesophyll cells senesced synchronously. They passed through the following steps in order: (i) degradation of cpDNA, (ii) decrease in the size of the chloroplast with degeneration of the chloroplast inner membranes, and (iii) condensation and disorganization of the nuclei. Although some differences were shown between the coleoptile and the second leaf in the timing and rate of each event, the order of those senescence-related events was conserved, suggesting an identical program of senescence exists in rice leaves.
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    URL: http://dx.doi.org/10.1007/BF01283003
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    Isolation of lipoxygenase cDNA clones from pea nodule mRNA (1999)
    Springer
    Plant molecular biology 39 (1999), S. 775-783 
    Details
    ISSN: 1573-5028
    Keywords: lipoxygenase ; legume ; nitrogen fixation ; Pisum sativum ; Rhizobium leguminosarum ; symbiosis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The pattern of lipoxygenase (LOX) gene expression was investigated in pea nodule tissues using the technique of in situ hybridization. Five lipoxygenase cDNAs were cloned from nodule mRNA by the RT-PCR and 3′ RACE procedures. These clones (loxN1 to loxN5) show a high degree of sequence homology, except in the 3′-untranslated region. Gene-specific riboprobes were therefore generated from subclones carrying the 3′-untranslated regions in order to investigate tissue-specific gene expression. Northern blotting analysis revealed that loxN1 corresponded to a transcript that was expressed exclusively in roots and nodules but not in the aerial parts of the plant. However, none of the LOX genes appeared to be up-regulated in nodule tissue relative to uninfected roots. Starting with the incomplete cDNA clone for loxN1, the full coding sequence termed lox1:Ps:1 was obtained by further rounds of RT-PCR and 5′ RACE procedures. In situ hybridization with nodule tissues revealed several different patterns of expression for the various LOX probes. However, none of the corresponding transcripts was expressed exclusively in the invasion zone, as might have been expected if one LOX gene product had been uniquely associated with the invasion process. In conclusion, this study provides no evidence for a direct role for any LOX gene product in plant-microbe interaction or host defence, but the fact that all the transcripts were expressed at the nodule apex suggests that LOX could be involved in the development of this organ.
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    URL: http://dx.doi.org/10.1023/A:1006184516754
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    The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza sativa L.) (1999)
    Springer
    Euphytica 108 (1999), S. 53-63 
    Details
    ISSN: 1573-5060
    Keywords: microsatellite ; Oryza sativa ; polymorphism ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ten microsatellite loci were analysed for 43 cultivars or breeding lines of rice. Polymorphism-Information-Content values ranged from 0.62 to 0.92. The microsatellite markers were found to be useful for cultivar identification and assessment of genetic relationships. Most of the cultivars could be uniquely identified by at least one microsatellite marker. Genetic heterogeneity was detected within rice samples by amplification of microsatellites from DNA extracted from multiple individual plants and also from bulked DNA preparations.
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    URL: http://dx.doi.org/10.1023/A:1003688612179
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    Agro-morphological characterization of ovary culture-derived plants of rice (Oryza sativa L.) (1999)
    Springer
    Euphytica 106 (1999), S. 197-203 
    Details
    ISSN: 1573-5060
    Keywords: doubled haploids ; genetics ; haploids ; induced variation ; Oryza sativa ; ovary culture ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plants derived from unpollinated ovary culture of ten rice genotypes showed significant variability in agro-morphological characteristics. The ovary-derived plant (H1) populations were completely haploid, doubled haploid or haploid-doubled haploid mixture. Haploids had very drastic reduction in plant height, panicle length, grain length, breadth and number and spikelet fertility (0.0%–2.1%). Doubled haploids from the hybrid of UPRI 95–121 × UPRI 95–165 were normal with fertility ranging between 69.6% and 97.7%. A genetic segregation in ratio of 1:1 was observed for five pigmentation characters in the H1 population derived from hybrid UPRI 95–122 × UPRI 95–165. Plant height showed the largest coefficient of variability (28.5%) followed by the number of spikelets per panicle (24.2%), number of grains per panicle (22.0%), percent seed set (9.2%) and panicle length (9.0%). The range of variation in the H1 population from fully fertile hybrid PMS 2A (CMS) × IR 31802 (restorer) was similar to its corresponding F2 population for plant height, spikelet fertility and number of grains/panicle. A single clone of plants from the cultivar BG 1321 exhibited complete male sterility but normal female fertility when pollinated with other varieties. Ovary-derived plants from the CMS lines PMS 2A and IR 58025A showed stable male sterility and those from thermosensitive genetic male sterile line UPRI 95–140 showed thermosensitive genetic male sterility. These lines have potential in the hybrid breeding program and are being currently exploited.
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    URL: http://dx.doi.org/10.1023/A:1003524217816
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    Expression of two PIP genes in rapidly growing internodes of rice is not primarily controlled by meristem activity or cell expansion (1999)
    Springer
    Plant molecular biology 40 (1999), S. 985-995 
    Details
    ISSN: 1573-5028
    Keywords: aquaporin ; gene expression ; growth ; Oryza sativa ; plasma membrane intrinsic protein (PIP) ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Membrane intrinsic proteins facilitate movement of small molecules often times functioning as water channels. We have identified two genes from rice which encode proteins with characteristic features of plasma membrane intrinsic proteins (PIP). They possess six membrane-spanning domains, an NPA repeat, overall high sequence homologies and characteristic C- and N-terminal hallmark motifs which allowed assignment of OsPIP1a to the PIP1 subfamily and of OsPIP2a to the PIP2 subfamily. OsPIP1a and OsPIP2a showed similar but not identical expression patterns. The two genes were expressed at higher levels in seedlings than in adult plants and expression in the primary root was regulated by light. In internodes of deepwater rice plants which were induced to grow rapidly by submergence, transcript levels were slightly induced in the intercalary meristem (IM) and slightly reduced in the elongation zone (EZ) after 18 h. In internodes of GA-induced excised stem sections transcript levels transiently declined in the IM and EZ after 1 h and subsequently recovered to elevated levels after 18 h. GA also induced OsPIP expression in non-growing tissue after 18 h. In the IM of submergence-induced stem sections transcript levels remained constitutive. The different growth-promoting treatments showed no direct correlation between growth rate and OsPIP gene expression in dividing or expanding cells. In fact, treatment of excised stem sections with ABA or drought stress induced similar changes in OsPIP expression in the growing zone during the first 6 h as GA did. We conclude that regulation of OsPIP1a and OsPIP2a expression is not primarily controlled by growth. GA-induced growth may however change the water status of cells which in turn results in altered PIP abundance.
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    URL: http://dx.doi.org/10.1023/A:1006265528015
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    Plant low-molecular-weight phospholipase A2s (PLA2s) are structurally related to the animal secretory PLA2s and are present as a family of isoforms in rice (Oryza sativa) (1999)
    Springer
    Plant molecular biology 41 (1999), S. 481-490 
    Details
    ISSN: 1573-5028
    Keywords: calcium-dependent ; lipid metabolism ; Oryza sativa ; phospholipase A2 ; PLA2
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Recently, we purified to homogeneity and characterized a low-molecular-weight calcium-dependent phospholipase A2 (PLA2) from developing elm seed endosperm. This represented the first purified and characterized PLA2 from a plant tissue. The full sequences of two distinct but homologous rice (Oryza sativa) cDNAs are given here. These encode mature proteins of 119 amino acids (PLA2-I, preceded by a 19 amino acid signal peptide) and 128 amino acids (PLA2-II, preceded by a 25 amino acid signal peptide), and were derived from four expressed sequence tag (EST) clones. Both proteins were homologous to the N-terminal amino acid sequence of the elm PLA2. They contained twelve conserved cysteine residues and sequences that are likely to represent the Ca2+-binding loop and active-site motif, which are characteristic of animal secretory PLA2s. A soluble PLA2 activity was purified 145 000-fold from green rice shoots. This had the same biochemical characteristics as the elm and animal secretory PLA2s. The purified rice PLA2 consisted of two proteins, with a molecular weight of 12 440 and 12 920, that had identical N-terminal amino acid sequences. This sequence was different from but homologous to the PLA2-I and PLA2-II sequences. Taken together, the results suggest that at least three different low-molecular-weight PLA2s are expressed in green rice shoots. Southern blot analysis suggested that multiple copies of such genes are likely to occur in the rice and in other plant genomes.
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    URL: http://dx.doi.org/10.1023/A:1006323405788
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    Distribution of two isoforms of NADP-dependent isocitrate dehydrogenase in soybean (Glycine max) (1999)
    Springer
    Plant molecular biology 40 (1999), S. 13-21 
    Details
    ISSN: 1573-5028
    Keywords: carbon metabolism ; isocitrate dehydrogenase ; isozymes ; nitrogen fixation ; soybean ; TCA cycle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Two different cDNAs that encode NADP-specific isocitrate dehydrogenase (NADP-IDH) isozymes of soybean (Glycine max) were characterized. The nucleotide sequences of the coding regions of these cDNAs have 74% identity to each other and give predicted amino acid sequences that have 83% identity to each other. Using PCR techniques, their coding regions were subcloned into a protein overexpression vector, pQE32, to yield pIDH4 and pIDH1, respectively. Both IDH4 and IDH1 enzymes were expressed in Escherichia coli as catalytically active His6 tagged proteins, purified to homogeneity by affinity chromatography on nickel chelate resin and rabbit polyclonal antibodies to each were generated. Surprisingly, antiserum to IDH4 did not react with IDH1 protein and IDH1 antiserum reacted only very weakly with IDH4 protein. IDH4 antibody reacts with a protein of expected molecular weight in cotyledon, young leaf, young root, mature root and nodules but the reaction with mature leaf tissue was low compared to other tissues. Western blot results show that IDH1 was not expressed in young roots but a protein that reacts with the IDH1 antibody was highly expressed in leaves, showing that there was tissue-specific accumulation of NADP-IDH isozymes in soybean.
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    URL: http://dx.doi.org/10.1023/A:1026464704134
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    Molecular mapping of a new genic male-sterility gene causing chalky endosperm in rice ( Oryza sativa L.) (1999)
    Springer
    Euphytica 106 (1999), S. 57-62 
    Details
    ISSN: 1573-5060
    Keywords: genic male-sterility gene ; mapping ; molecular markers ; Oryza sativa ; pleiotropic effect
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A genic male-sterility gene newly induced by chemical mutagenesis, tentatively designated as ms-h(t), was located on the molecular map of rice and tested for its effect on chalky endosperm. Bulked segregant analysis was used to determine the chromosomal location of the ms-h(t) locus by screening four to five RFLP markers per chromosome. After confirming that the gene was located on chromosome 9, twenty-four RFLP markers from chromosome 9 were surveyed for polymorphism in the parents of the mapping population. Of these, eleven markers were mapped around the ms- h(t) locus. RG451 and RZ404 flanked the ms-h(t) gene, at 2.5cM and 3.3cM, respectively. Heterozygous F2 to F4 progenies were tested for co- segregation of male-sterility and chalky endosperm and it was revealed that ms-h(t) might have a pleiotropic effect on chalky endosperm. This mutant would be a good biological material to characterize the biochemical mechanism of male sterility and related pleiotropic effects. Further studies should be needed to know the usefulness of this mutant for hybrid seed production.
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    Importance of ornithine-δ-aminotransferase to proline accumulation caused by water stress in detached rice leaves (1999)
    Springer
    Plant growth regulation 27 (1999), S. 191-194 
    Details
    ISSN: 1573-5087
    Keywords: ornithine-δ-aminotransferase ; proline accumulation ; Oryza sativa ; water stress
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Proline is synthesized either from glutamate or from ornithine in plants. Relatively little is known about the contribution of the pathway from ornithine to proline biosynthesis. In this paper we investigated the contribution of ornithine-δ-aminotransterase (OAT), an enzyme responsible for ornithine pathway, to proline accumulation in water-stressed detached rice leaves. Although OAT activity increased with the increase of water stress duration, a pattern similar to that obtained for proline accumulation, the ornithine pathway in rice leaves seems to contribute little, if any, to proline accumulation under water stress condition. This conclusion was based on the observations that (a) gabaculine (50 μM), an inhibitor of OAT, inhibited about 75% OAT activity caused by water stress but reduced only 20% of proline content and (b) cycloheximide, a protein synthesis inhibitor, had no effect on OAT activity induced by water stress but significantly reduced proline accumulation.
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    URL: http://dx.doi.org/10.1023/A:1006226732574
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    Endogenous abscisic acid levels are not linked to methyl jasmonate-promoted senescence of detached rice leaves (1999)
    Springer
    Plant growth regulation 28 (1999), S. 17-20 
    Details
    ISSN: 1573-5087
    Keywords: abscisic acid ; ammonium ; leaf senescence ; methyl jasmonate ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Both abscisic acid (ABA) and jasmonates are known to promote leaf senescence. Since ABA and jasmonates have both chemical and physiological similarities, we are interested to know whether senescence of detached rice leaves induced by methyl jasmonate (MJ) is mediated through an increase in endogenous ABA levels. In darkness, the endogenous level of ABA in detached rice leaves remained unchanged in the first day of incubation in water and increased about 5 times its initial value in the second day. However, the pattern of senescence, as judged by protein loss, was rapid during the first day. MJ significantly promoted senescence of detached rice leaves. Contrary to our expectation, endogenous ABA levels decreased in MJ-treated detached rice leaves. Similar to the effect of MJ, endogenous ABA levels decreased in detached rice leaves which were induced to senesce by treatment with NH4Cl. These results suggest that endogenous ABA levels are not linked to MJ-induced senescence of detached rice leaves.
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    URL: http://dx.doi.org/10.1023/A:1006251922889
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    Induction by ozone of ethylene production and an ACC oxidase cDNA in rice (Oryza sativa L.) leaves (1999)
    Springer
    Plant growth regulation 28 (1999), S. 123-127 
    Details
    ISSN: 1573-5087
    Keywords: 1-aminocyclopropane-1-carboxylate (ACC) oxidase ; ethylene ; Oryza sativa ; ozone ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Exposure to ozone at 1 µl l−1 for 6 h induced ethylene production in rice (Oryza sativa L. cv. Hitomebore) leaves. The stimulation of ethylene production was detectable 2 h after the start of the exposure to ozone, and lasted for 6 h after the exposure. A 429-bp cDNA fragment encoding ACC oxidase was obtained by RT-PCR from ozone-treated rice leaves. Its nucleotide sequence and deduced amino-acid sequence had 97.2% and 94.4% identity, respectively, to those of OS1A1COX, which was previously obtained from deepwater rice. The abundance of the cDNA increased in accordance with the induction of ethylene production by the exposure to ozone.
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    URL: http://dx.doi.org/10.1023/A:1006229421785
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    High-resolution DNA fingerprinting of Indian rice (Oryza sativa L) varieties by amplified fragment length polymorphism (1999)
    Springer
    Genetic resources and crop evolution 46 (1999), S. 427-433 
    Details
    ISSN: 1573-5109
    Keywords: AFLP analysis ; DNA fingerprinting ; genetic diversity ; Indian rice varieties ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract To assess diversification of indica rice, fingerprinting of 42 Indian rice varieties (Oryza sativa L) and one accession of O. brachyantha Chev. et Roehr. was taken up using amplified fragment length polymorphism (AFLP). Six primer combinations of PstI and MseI were used for this purpose. On denaturing polyacrylamide sequencing gel, on average 41 scorable AFLP bands were obtained of which 81% were polymorphic. Each variety revealed a distinct fingerprint. Data were scored on the basis of presence and absence of bands and cluster analysis was performed using Dice similarity coefficients. The resultant dendrogram showed four major clusters and traits. Some varieties especially landraces revealed more polymorphism and unique loci. Such study will be a valuable tool for proper choice of parents in mapping populations or breeding programs to produce heterotic several inexplicable minor clusters. Some varieties were grouped according to parentages of the cross while some were grouped according to physiological combinations apart from providing a characteristic fingerprint.
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    URL: http://dx.doi.org/10.1023/A:1008696306235
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    Geographical distribution of genes causing hybrid breakdown in varietal crosses of Asian cultivated rice (1999)
    Springer
    Genetic resources and crop evolution 46 (1999), S. 13-17 
    Details
    ISSN: 1573-5109
    Keywords: F2 weakness ; reproductive barrier ; Oryza sativa ; gene distribution ; clinal variation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract In a backcrossing program to introduce the wx (glutinous endosperm) gene from a Thai upland rice cultivar, Col.No.15, to a Japanese cultivar, Sasanishiki, of Asian cultivated rice, Oryza sativa L., weak plants were observed in the BC1F1 generation. These weak plants were characterized by poor growth and discoloration at the tillering stage, though they were completely fertile. Hybrid breakdown, which is defined as hybrid weakness and sterility detected in the F2 and later inbred generations of varietal crosses, is controlled by a pair of recessive genes, hwd1 and hwd2, at unlinked loci. Two dominant genes at either the same or different loci, Hwd1/Hwd1 hwd2/hwd2, hwd1/hwd1 Hwd2/Hwd2 or Hwd1/hwd1 Hwd2/hwd2, are needed for normal growth. Using tester lines homozygous for a pair of recessive genes selected in the BC1F3 generation, the genotypes for hybrid breakdown of 100 Asian rice cultivars were determined based on the phenotype of F1 plants. Clinal variation for hybrid breakdown was observed. Cultivars with two dominant alleles at either hwd1 or hwd2 locus, were mainly found in insular Asia (Japan, Philippines and Indonesia), while the frequency of cultivars with four dominant alleles was more common in cultivars from continental Asia. Roles of hybrid breakdown in genetic differentiation of Asian cultivated rice are discussed.
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    URL: http://dx.doi.org/10.1023/A:1008631600311
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    Restoration of gibberellin biosynthesis by 2,6-diisopropylphenoxyacetic acid in uniconazole-treated rice plants (1999)
    Springer
    Plant growth regulation 28 (1999), S. 67-72 
    Details
    ISSN: 1573-5087
    Keywords: 2,6-diisopropylphenoxyacetic acid ; gibberellin ; Oryza sativa ; rice ; shoot elongation ; uniconazole
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract 2,6-Diisopropylphenoxyacetic acid (DIPA), a promoter of growth and flowering of Sagittaria species, was found to improve the shoot growth of rice plants treated with uniconazole, an inhibitor of gibberellin (GA) biosynthesis. In a modified micro-drop bioassay using semi-dwarf rice, Oryza sativa L. cv. Tan-ginbozu, in which uniconazole had been incorporated into the agar medium, a significant recovery from growth inhibition was observed for both the 3rd and the 4th leaf sheaths but not for the 2nd sheath. In greenhouse experiments, uniconazole-treated rice plants partially recovered from growth inhibition when DIPA was applied after uniconazole treatment, whereas DIPA applied with, or before, uniconazole treatment did not improve growth. The levels of GA1 and GA20 in the rice plants treated with uniconazole plus DIPA were almost equal to those of the untreated controls, indicating that the observed growth recovery is attributable to the restoration of GA biosynthesis by DIPA.
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    URL: http://dx.doi.org/10.1023/A:1006215428363
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    Mapping QTLs associated with drought resistance in rice: Progress, problems and prospects (1999)
    Springer
    Plant growth regulation 29 (1999), S. 123-133 
    Details
    ISSN: 1573-5087
    Keywords: Oryza sativa ; drought resistance ; root morphology ; root growth ; osmotic adjustment ; review
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The use of molecular markers in the mapping of traits of agronomic importance holds great promise for speeding the development of improved plant varieties and increasing our understanding of the physiological or molecular mechanisms behind biological phenomena. The technique is now being applied to drought resistance in rice (Oryza sativa L.). Drought is important because a considerable proportion of the world rice area is not irrigated and can be prone to water deficit. A large number of people, particular some of the poorest rice farmers, stand to gain if new varieties which combine high yield and drought resistance can be developed. Rice should be particularly useful for the molecular genetic analysis of drought resistance because of its growing role as a model monocot species and the diversity of drought resistance mechanisms which are found in the germplasm. We briefly review the traits which might be considered important in improving drought resistance in rice, before explaining the molecular mapping approach. We review progress at locating quantitative trait loci (QTLs) for individual mechanisms of drought resistance in controlled environment conditions. This includes a detailed comparison of reported QTLs related to root morphological characters. The search for QTLs associated with field performance under drought stress is analysed and the problems associated with understanding the genetic control of a complex physical and physiological phenomenon under conditions of substantial environmental variation are highlighted. We emphasise that the use of near isogenic lines in overcoming some of the problems offers considerable promise for the future.
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    URL: http://dx.doi.org/10.1023/A:1006255832479
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    The genetic structure and conservation of aus, aman and boro rices from Bangladesh (1999)
    Springer
    Genetic resources and crop evolution 46 (1999), S. 587-598 
    Details
    ISSN: 1573-5109
    Keywords: diversity ; genetic resources ; GIS ; Oryza sativa ; RAPD ; rice
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract A diverse set of 115 rice varieties from Bangladesh was surveyed using 35 polymorphic RAPD (randomly amplified polymorphic DNA) markers and the genetic structure of this germplasm, encompassing the principal rice ecotypes of Bangladesh (aus, aman and boro), was determined using multivariate analysis. The level of genetic diversity was evaluated and compared with the levels of diversity found within other rice growing areas of the world. Geographical information systems analysis using Atlas-GIS was employed to analyse and present the geographic distribution of genetic diversity across Bangladesh, and cluster analysis was used to test the efficiency of selection of material for a core collection.
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    URL: http://dx.doi.org/10.1023/A:1008749532171
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    The presence of nitrogen fixing legumes in terrestrial communities: Evolutionary vs ecological considerations (1999)
    Springer
    Biogeochemistry 46 (1999), S. 233-246 
    Details
    ISSN: 1573-515X
    Keywords: biogeography ; Fabaceae ; legumes ; nitrogen fixation ; nutrient limitation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract Nitrogen is often a limiting factor to net primary productivity (NPP) and other processes in terrestrial ecosystems. In most temperate freshwater ecosystems, when nitrogen becomes limiting to NPP, populations of N-fixing cyanobacteria experience a competitive advantage, and begin to grow and fix nitrogen until the next most limiting resource is encountered; typically phosphorus or light. Why is it that N-fixing plants do not generally function to overcome N limitation in terrestrial ecosystems in the same way that cyanobacteria function in aquatic ecosystems? To address this question in a particular ecosystem, one must first know whether the flora includes a potential set of nitrogen fixers. I suggest that the presence or absence of N-fixing plant symbioses is foremost an evolutionary consideration, determined to a large extent by constraints on the geographical radiation of woody members of the family Fabaceae. Ecological factors such as competition, nutrient deficiencies, grazing and fire are useful to explain the success of N-fixing plants only when considered against the geographical distribution of potential N-fixers.
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    URL: http://dx.doi.org/10.1007/BF01007581
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    Ecosystem constraints to symbiotic nitrogen fixers: a simple model and its implications (1999)
    Springer
    Biogeochemistry 46 (1999), S. 179-202 
    Details
    ISSN: 1573-515X
    Keywords: carbon dioxide ; grazing ; nitrogen fixation ; nitrogen limitation ; phosphorus ; shade
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences
    Notes: Abstract The widespread occurrence of N limitation to net primary production (NPP) and other ecosystem processes, despite the ubiquitous occurrence of N-fixing symbioses, remains a significant puzzle in terrestrial ecology. We describe a simple simulation model for an ecosystem containing a generic nonfixer and a symbiotic N fixer, based on: (1) a higher cost for N acquisition by N fixers than nonfixers; (2) growth of fixers and fixation of N only when low N availability limits the growth of nonfixers, and other resources are available; and (3) losses of fixed N from the system only when the quantity of available N exceeds plant and microbial demands. Despite the disadvantages faced by the N fixer under these conditions, N fixation and loss adjust N availability close to the availability of other resources, and biomass and NPP in this simple model can be substantially but only transiently N limited. We then modify the model by adding: (1) losses of N in forms other than excess available N (e.g., dissolved organic N, trace gases produced by nitrification); and (2) constraints to the growth and activity of N fixers imposed by differential effects of shading, P limitation, and grazing. The combination of these processes is sufficient to describe an open system, with input from both precipitation and N fixation, that is nevertheless strongly N-limited at equilibrium. This model is useful for exploring causes and consequences of constraints to N fixation, and hence of N limitation, and we believe it will also be useful for evaluating how N fixation and limitation interact with elevated CO2 and other components of global enviromental change.
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    URL: http://dx.doi.org/10.1023/A:1006185020121
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    Improved fallows come of age in the tropics (1999)
    Springer
    Agroforestry systems 47 (1999), S. 3-12 
    Details
    ISSN: 1572-9680
    Keywords: leguminous fallow ; nitrogen fixation ; soil fertility replenishment
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Improved fallows are the deliberate planting of fast-growing species — usually legumes — for rapid replenishment of soil fertility. Improved fallows are rapidly spreading in several regions of the tropics as a sensible way for in situ accumulation of large quantities of N in vegetation and soil, as well as for providing sustainability enhancing services. Research on improved fallows increased after the mid 1980s with the development of what is known as the second soil fertility paradigm, which is based on sustainability considerations. Many lessons have emerged from short-term improved fallows (〈5 years duration). These include the diversity of farm sizes where improved fallows are used, the advantage of sequential versus simultaneous systems, the utilization of dry seasons unfavorable for crop production, the comparative advantages of woody versus herbaceous leguminous fallows, the magnitude of N accumulation, the strategic use of N fertilizers, and the importance of P. Other key services provided by fallows include fuelwood production, recycling of nutrients besides N, provision of a C supply to soil microorganisms, weed suppression, Striga control, and improved soil water storage. Natural fallows of non-legume shrubs belonging to the Asteraceae family, collectively called ‘daisy fallows’, may provide lessons for the development of improved fallows. The maintenance of genetic diversity in fallows is paramount. The main limiting factor in Africa is clearly the supply of germplasm of improved fallow species. This must be overcome though large-scale seed orchards and nursery development before impact at the scale of millions of farmers can take place.
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    URL: http://dx.doi.org/10.1023/A:1006287702265
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    Influence of boric acid on somatic embryogenesis of a cytosterile line of indica rice (1999)
    Springer
    Plant cell, tissue and organ culture 58 (1999), S. 73-75 
    Details
    ISSN: 1573-5044
    Keywords: boric acid ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effect of boric acid on somatic embryo induction in rice was investigated using mature seeds of a widely used cytoplasmic male sterile line of indica rice IR-58025. Boric acid was added at a concentration of 100.00, 161.29, 241.93, 322.58 and 403.22 μM to the embryo induction medium containing basal salts, with 9.84 μM 2,4-dichlorophenoxyacetic acid. Boric acid was found to exert different effects on scutellum, coleoptile and root tissues. Increased growth of embryogenic masses with increasing boric acid concentrations was observed on coleoptile tissues of mature seed. Embryogenic response was observed at 161.29 μM boric acid on coleoptile and 241.93 μM boric acid on root tissue. Scutellum tissue showed embryonic response in 161.29 and 241.93 μM boric acid. The results indicate that the boric acid used in standard Murashige and Skoog medium is not sufficient to support induction of somatic embryogenesis in IR-58025 A.
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    URL: http://dx.doi.org/10.1023/A:1006355410611
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    Polyamine-induced changes in symbiotic parameters of the Galega orientalis–Rhizobium galegae nitrogen-fixing system (1999)
    Springer
    Plant and soil 210 (1999), S. 83-91 
    Details
    ISSN: 1573-5036
    Keywords: Galega orientalis ; nitrogen fixation ; polyamines ; Rhizobium galegae ; ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Plants of goat's rue (Galega orientalis) inoculated with Rhizobium galegae strain HAMBI 540 were grown in the presence of putrescine (Put), spermidine (Spd) or spermine (Spm), and several symbiotic characteristics were investigated to delineate the influence of polyamines (PA) on this nitrogen-fixing system. All three PA exerted a concentration-dependent effect on the nodule parameters tested. The increment of nodulation ability and nodule biomass accumulation was extreme (from 2.4- to 4.0-fold) when plants were subjected to 10 and 50 μM of various PA. However, at 100 μM a negative effect was observed. The acetylene-reduction activity of nodulated roots was increased also in response to treatment with the lower PA concentrations. The level of nitrogenase activity supported by succinate was significantly higher in bacteroids isolated from PA-treated nodules than in bacteroids from control nodules. The symbiotic parameters were also dependent on the type of PA used; the most effective being the diamine Put, while Spm showed a smaller physiological effect with respect to the others. Polyamines altered the ultrastructure of Galega nodule infected cells. After treatment with these substances, pronounced changes in the relative volume of the main components of infected cells and their compartments were observed. The significance of the structural observations and morphometric analyses, their relationship to differences in nitrogen fixation and possible modes of action are discussed.
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    URL: http://dx.doi.org/10.1023/A:1004636800869
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    NaCl induced changes in ionically bound peroxidase activity in roots of rice seedlings (1999)
    Springer
    Plant and soil 216 (1999), S. 147-153 
    Details
    ISSN: 1573-5036
    Keywords: NaCl ; Oryza sativa ; peroxidase ; root growth
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The changes in ionically bound peroxidase activity in roots of NaCl-stressed rice seedlings and their correlation with root growth were investigated. Increasing concentrations of NaCl from 50 to 150 mM progressively decreases root growth. The reduction of root growth by NaCl is closely correlated with the increase in ionically bound peroxidase activity. Since proline and ammonium accumulations are associated with root growth inhibition caused by NaCl, we determined the effects of proline or NH4Cl on root growth and ionically bound peroxidase activity in roots. External application of proline or NH4Cl markedly inhibited root growth and increased ionically bound peroxidase activity in roots of rice seedlings in the absence of NaCl. An increase in ionically bound peroxidase activity in roots preceded inhibition of root growth caused by NaCl, NH4Cl or proline. Mannitol inhibited root growth, but decreased rather than increased ionically bound peroxidase activity at the concentration iso-osmotic with NaCl. The inhibition of root growth and the increase in ionically bound peroxidase activity in roots by NaClis reversible and is associated with ionic rather than osmotic component.
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    URL: http://dx.doi.org/10.1023/A:1004714506156
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    A test of a potential short cut in the nitrogen cycle: The role of exudation of symbiotically fixed nitrogen from the roots of a N-fixing tree and the effects of increased atmospheric CO2 and temperature (1999)
    Springer
    Plant and soil 210 (1999), S. 21-32 
    Details
    ISSN: 1573-5036
    Keywords: CO2 enrichment ; climate change ; dissolved organic nitrogen ; nitrogen cycle ; nitrogen fixation ; root exudate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract N-fixing trees facilitate the growth of neighboring trees of other species. These neighboring species benefit from the simple presence of the N fixation symbiosis in their surroundings. Because of this phenomenon, it has been hypothesized that a change in atmospheric CO2 concentration may alter the role of N-fixing trees in their environment. It is thought that the role of N-fixing trees in ecosystems of the future may be more important since they may help sustain growth increases due to increased CO2 concentration in nitrogen limited forests. We examined: (1) whether symbiotically fixed N was exuded from roots, (2) whether a doubled atmospheric CO2 concentration would result in increased organic N exudation from roots, and (3) whether increased temperature or N availability affected N exudation from roots. This study analyzed exudation of dissolved organic N from the roots of seedlings of the N-fixing tree Robinia pseudoacacia L. in a full factorial design with 2 CO2 (35.0 and 70.0 Pa) × 2 temperature (26 or 30 °C during the day) × 2 N fertilizer (0 and 10.0 mM N concentration) levels. Trees with no other source of N except N fixation exuded about 1% to 2% of the fixed N through their roots as dissolved organic N. Increased atmospheric CO2 concentrations did not, however, increase N exudation rates on a per gram belowground biomass basis. A 4 °C increase in temperature and N fertilization did, however, significantly increase N exudation rates. These results suggest that exudation of dissolved organic N from roots or nodules of N-fixing trees could be a significant, but minor, pathway of transferring N to neighboring plants in a much more rapid and direct way than cycling through death, decomposition and mineralization of plant residues. And, while exudation rates of dissolved organic N from roots were not significantly affected by atmospheric CO2 concentration, the previously observed ‘CO2 fertilization effect’ on N-fixing trees suggests that N exudation from roots could play a significant but minor role in sustaining increases in forest growth, and thus C storage, in a CO2 enriched atmosphere.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1004619509878
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  • 86
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    Up-regulation of sucrose phosphate synthase in rice grown under elevated CO2 and temperature (1999)
    Springer
    Photosynthesis research 60 (1999), S. 199-208 
    Details
    ISSN: 1573-5079
    Keywords: acclimation ; C/N ratio ; CO2-enrichment ; Oryza sativa ; Rubisco ; sucrose ; starch
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Rice (Oryza sativa L. cv. IR-30) was grown season-long in outdoor, controlled-environment chambers at 33 Pa CO2 with day/night/paddy-water temperatures of 28/21/25 °C, and at 66 Pa CO2 with five different day/night/paddy-water temperature regimes (25/18/21, 28/21/25, 31/24/28, 34/27/31 and 37/30/34 °C). Sucrose phosphate synthase (SPS) activities in leaf extracts at 21, 48 and 81 days after planting (DAP) were assayed under saturating and selective (limiting) conditions. Diel SPS activity data indicated that rice SPS was light regulated; with up to 2.2-fold higher rates during the day. Throughout the growth season, leaf SPS activities were up-regulated in the CO2-enriched plants, averaging 20 and 12% higher than in ambient-CO2 grown plants in selective and saturating assays, respectively. Similarly, SPS activities increased 2.4% for each 1 °C rise in growth temperature from 25 to 34 °C, but de creased 11.5% at 37 °C. Leaf sucrose content was higher, and mirrored SPS activity better, than starch, although starch was more responsive to CO2 treatment. Leaf sucrose and starch contents were significantly higher throughout the season in plants at elevated CO2, but the N content averaged 6.5% lower. Increasing growth temperatures from 25 to 37 °C caused a linear decrease (62%) in leaf starch content, but not in sucrose. Consequently, the starch:sucrose ratio declined with growth temperature. The data are consistent with the hypothesis that the up-regulation of leaf SPS may be an acclimation response of rice to optimize the utilization and export of organic-C with the increased rates of inorganic-C fixation in elevated CO2 or temperature growth regimes.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1006242001390
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  • 87
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    Aquatic plants in the rice fields of the Tagus Valley, Portugal (1999)
    Springer
    Hydrobiologia 415 (1999), S. 59-65 
    Details
    ISSN: 1573-5117
    Keywords: ecological profiles ; rice weeds ; neophytes ; Oryza sativa ; Heteranthera limosa ; Heteranthera reniformis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In 1997, in 50 surveys of irrigated rice fields (Oryza sativa L.), 47 species of vascular plants were recorded in 19 families. Most of the species belonged to the Gramineae and Cyperaceae families. Seven species of algae were found, mostly Hydrodictyon reticulatum (42%) and Chara vulgaris(38%). Echinochloa crus-galli and Paspalum paspalodesshowed a relative frequency of 98% and 82%, respectively. An interpretation of the major factors is presented influencing weed distribution. Amongst the weeds recorded, 13 were alien species. For these alien species the probable date of introduction into Portugal and into rice fields was determined. The recently introduced neophytes Heteranthera limosa and Heteranthera reniformis and the increasing presence of red rice (Oryza sativa), represent a potential danger to rice culture.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1003873315570
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  • 88
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    Effects of Landfill Leachate on Growth and Nitrogen Fixation of two Leguminous Trees (Acacia Confusa, Leucaena Leucocephala (1999)
    Springer
    Water, air & soil pollution 111 (1999), S. 29-40 
    Details
    ISSN: 1573-2932
    Keywords: Acacia confusa ; landfill leachate ; legume ; Leucaena leucocephala ; nitrogen addition ; nitrogen fixation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract The influence of landfill leachate on the rhizobia-legume systems of Acacia confusa and Leucaena leucocephala was assayed for five months with a serial dilution (73–0.58%) of leachate which had a high concentration of NH4-N and dissolved organics. Although the acetylene reduction activity (ARA) of the nodules was suppressed by the leachate, the harvestable biomass of inoculated seedlings was higher than rhizobia-free seedlings. The total N content in rhizobia-free seedlings was higher than that for inoculated seedlings, indicating that the legumes accumulated more N from leachate-irrigated soil when they were not inoculated. Their performance was compared with that of two non-legumes (Cinnamomum parthenoxylon, Tristania conferta). These two non-legumes tolerated the highest concentration of leachate for only one month and then started to wilt. The total N contents of their tissue were less than those of the two legumes.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1005088919668
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  • 89
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    Autoregulation of soybean–Bradyrhizobium nodule symbiosis is controlled by shoot or/and root factors (1999)
    Springer
    World journal of microbiology and biotechnology 15 (1999), S. 715-722 
    Details
    ISSN: 1573-0972
    Keywords: Bradyrhizobium ; grafting ; isoflavonoid ; nitrogen fixation ; nodulation ; soybean
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Abstract Two strains of Bradyrhizobium japonicum were evaluated with five commercial cultivars of soybean (Clark, Crauford, Davis, Centaur, and Nessen) and one hypernodulating mutant NOD1-3. The hypernodulating NOD1-3 produced 30–50 times the number of nodules of commercial cultivars either inoculated with B. japonicum strain USDA 123 or RCR 3409. Grafting of NOD1-3 shoots to Clark and Davis roots induced hypernodulation on roots of Clark and Davis but did not enhance nodulation when grafted onto the roots of Crauford, Centaur, and Nessen. In contrast, the shoots of Clark, Davis, Centaur and Nessen significantly inhibited nodule formation on the root of NOD1-3. However, Crauford shoots did not alter nodule formation on the roots of NOD1-3 as compared with self-grafts of NOD1-3. It appears that the shoot of NOD1-3 has the ability to alter autoregulatory control of nodulation of Clark and Davis cultivars, but not of Crauford, Centaur and Nessen. The results suggest that the regulation of nodulation in soybean cultivars Clark and Davis is controlled by the shoot factors, while the Crauford was root controlled. Reciprocal grafts between NOD1-3 and Centaur or Nessen indicate that both shoot and root factors are involved in regulation of nodulation. The results suggested that the regulation of nodulation did not depend on bradyrhizobial strains. The shoot control of hypernodulation may be causally related to differential root isoflavonoid levels, which are also controlled by shoot. Application of daidzein significantly enhanced the nodulation and nitrogenase activity of soybean cv. Clark. Root control of restricted nodulation of soybean cv. Centaur did not respond to the addition of daidzein in nutrient solution indicating that this character is not related to isoflavonoids. Therefore, autoregulation in Clark and Centaur plants may be separate events in legume–rhizobia symbiosis and regulated by different kinds of signals.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1008962430454
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  • 90
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    Salinity Induces Accumulation of Soluble Sugars and Alters the Activity of Sugar Metabolising Enzymes in Rice Plants (1999)
    Springer
    Biologia plantarum 42 (1999), S. 233-239 
    Details
    ISSN: 1573-8264
    Keywords: acid invertase ; Oryza sativa ; starch phosphorylase ; sucrose phosphate synthase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Changes in the starch and sucrose contents, and the sucrose phosphate synthase, acid invertase, and starch phosphorylase activities were studied in the seedlings of salt sensitive and salt tolerant rice cultivars growing under two NaCl concentrations (7 and 14 dS m-1) for 20 d. Under salinity, the starch content in roots declined more in salt sensitive cvs. Ratna and Jaya than in salt tolerant cvs. CSR-1 and CSR-3 and was unchanged in shoots. The contents of reducing and non-reducing sugars, and the activity of sucrose phosphate synthase was increased more in the sensitive than in the tolerant cultivars. Acid invertase activity decreased in shoots of the salt tolerant cultivars, whereas increased in salt sensitive cultivars. Starch phosphorylase activity decreased in all cultivars.
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    URL: http://dx.doi.org/10.1023/A:1002160618700
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  • 91
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    Effects of Irradiance and Copper on the Activity of Ascorbate Oxidase in Detached Rice Leaves (1999)
    Springer
    Biologia plantarum 42 (1999), S. 583-588 
    Details
    ISSN: 1573-8264
    Keywords: Cu metalloenzyme ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effects of copper on the activity of ascorbic acid oxidasc (AAO) in detached rice leaves under both light and dark conditions and in etiolated rice seedlings were investigated. CuSO4 increased AAO activity in detached rice leaves in both light and darkness, however, the induction in darkness was higher than in the light. In the absence of CuSO4, irradiance (40 μmol m-2 s-1) resulted in a higher activity of AAO in detached rice leaves than dark treatment. Both CuSO4 and CuCl2 increased AAO activity in detached rice leaves, indicating that AAO is activated by Cu. Sulfate salts of Mg, Mn, Zn and Fe were ineffective in activating AAO in detached leaves. CuSO4 was also observed to increase AAO activity in the roots but not in shoots of etiolated rice seedlings.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1002631518753
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  • 92
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    Promotion of Androgenesis in Rice Anther Cultures by Substitution of Sucrose with Maltose and Mannitol (1999)
    Springer
    Biologia plantarum 42 (1999), S. 125-128 
    Details
    ISSN: 1573-8264
    Keywords: albino plants ; calli ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Maltose was four times more effective than sucrose for androgenesis in anther cultures of an indica rice cultivar IR 43. Partial substitution of maltose by mannitol considerably enhanced the regeneration of green plants.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1002187930087
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  • 93
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    Effects of Abscisic Acid and Water Stress on the Senescence of Detached Rice Leaves (1999)
    Springer
    Biologia plantarum 42 (1999), S. 313-316 
    Details
    ISSN: 1573-8264
    Keywords: Oryza sativa ; oxygen scavenging enzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The effects of abscisic acid (ABA) and water stress on senescence and enzyme activities of oxygen scavenging enzymes of detached rice leaves were compared. Exogenously applied ABA exhibited water stress-like effects by promoting senescence, by decreasing the activities of catalase, peroxidase, ascorbate peroxidase and superoxide dismutase. It seems that the effects of water stress on senescence and enzyme activities are possibly mediated through increased content of endogenous ABA.
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    URL: http://dx.doi.org/10.1023/A:1002133307314
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  • 94
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    Effects of Salicylic Acid on Heavy Metal-Induced Membrane Deterioration Mediated by Lipoxygenase in Rice (1999)
    Springer
    Biologia plantarum 42 (1999), S. 409-415 
    Details
    ISSN: 1573-8264
    Keywords: catalase ; electrical conductivity ; injury index ; lead ; lipid peroxidation ; malondialdehyde ; membrane permeability ; mercury ; Oryza sativa ; peroxidase ; superoxide dismutase
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Deterioration of membranes caused by lipoxygenase (LOX) activity under 10 µM PbCl2 or 10 µM HgCl2 was partially alleviated by the exogenous application of 100 µM salicylic acid (SA). In two cultivars of rice (Oryza sativa L. cvs. Ratna and IR 36), the presence of SA ameliorated the increased leakage of electrolytes, injury index, and the content of malondialdehyde caused by these heavy metals. Lead decreased H2O2 content whereas Hg increased it in both cultivars. Application of SA increased H2O2 in presence of Pb, while decreased it in presence of Hg. Both Pb and Hg decreased superoxide dismutase activity, while increased peroxidase activity. The activity of catalase was decreased by Hg but increased by Pb and SA reversed their effects. Thus, SA ameliorated the damaging effects of Pb and Hg on membranes.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1023/A:1002469303670
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  • 95
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    The role of legume fallows in intensified upland rice-based systems of West Africa (1998)
    Springer
    Nutrient cycling in agroecosystems 53 (1998), S. 71-81 
    Details
    ISSN: 1573-0867
    Keywords: fallow ; legumes ; nitrogen fixation ; rice ; weeds ; West Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Traditional upland rice-based cropping systems in West Africa rely on periods of fallow to restore soil fertility and prevent the build-up of insect pests and weeds. Demographic growth and increased demand for land is forcing many farmers to intensify their rice production systems. Declining fallow length and increasing number of crops before leaving the land to extended fallow result in a significant yield reduction. Promising cropping system alternatives include the use of site specific, weed-suppressing, multi-purpose cover legumes as short duration fallows. Constraints to rice production related to intensification were determined in 209 farmers' fields in four agro-ecological zones during 1994 and 1995. Nitrogen accumulation and weed suppression were evaluated in 54 legume accessions, grown for six months during the dry season, under a range of hydrological and soil conditions in 1994/95. Their effect on the yield of upland rice was determined in 1995. To increase benefits from improved fallow technology, the timing of legume establishment in relation to rice and the effect on crop and weed growth of removing, burning, mulching, or incorporating fallow residues prior to the rice crop were determined. Intensified land use resulted in a significant plot-level yield reduction that was highest in the derived savanna and the bimodal forest zones where it was associated with a doubling of the weed biomass in rice and a significant reduction in soil N supply. Legume fallows appear to offer the potential to sustain rice yields under intensified cropping. Legume biomass was in most instances significantly greater than in the weedy fallow control and several legume species suppressed weed growth. Nitrogen accumulation by legumes varied between 1–200 kg N ha-1 with 30–90% Ndfa. Rice grain yield following legume fallows increased by an average of 0.2 mg ha-1 or 29% above the weedy fallow control. Relay establishment substantially increased legume biomass. However, seeding of the legume at 28 days or earlier significantly reduced grain yield due to interspecific competition. Incorporating or mulching of fallow residues provided no significant yield advantage as compared to burning. Absolute effects varied as a function of site, legume species, and management practice.
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    URL: http://dx.doi.org/10.1023/A:1009767530024
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    The green fluorescent protein (GFP) as a vital screenable marker in rice transformation (1998)
    Springer
    Theoretical and applied genetics 96 (1998), S. 164-169 
    Details
    ISSN: 1432-2242
    Keywords: Key words Green fluorescent protein ; Visual screening ; Transformation ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  An engineered green fluorescent protein (GFP) from the jellyfish Aequora victoria was used to develop a facile and rapid rice transformation system using particle bombardment of immature embryos. The mgfp4 gene under the control of the 35s Cauliflower Mosaic Virus promoter produced bright-green fluorescence easily detectable and screenable in rice tissue 12–22 days after bombardment. Visual screening of transformed rice tissue, associated with a low level of antibiotic selection, drastically reduced the quantity of tissue to be handled and the time required for the recovery of transformed plants. GFP expression was observed in primary transformed rice plants (T0) and their progeny (T1). We describe various techniques to observe GFP in vitro and in vivo. The advantages of this new screenable marker in rice genetic engineering programmes are discussed.
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    URL: http://dx.doi.org/10.1007/s001220050723
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    Classification of rice germplasm: III. High-resolution fingerprinting of cytoplasmic genetic male-sterile (CMS) lines with AFLP (1998)
    Springer
    Theoretical and applied genetics 96 (1998), S. 941-949 
    Details
    ISSN: 1432-2242
    Keywords: Key words AFLP ; Fingerprinting ; Genetic diversity ; Hybrid rice ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  The cytoplasmic genetic male-sterile (CMS) lines developed at the International Rice Research Institute are valuable in producing tropical rice hybrids. Efficient use of CMS lines in hybrid rice production will depend on their level of genetic diversity. Aside from morphological characterization, molecular analysis based on DNA markers can provide information on the genetic diversity of the germplasm. The Amplified Fragment Length Polymorphism (AFLP) technique was used to fingerprint 71 CMS lines and four rice cultivars, ‘IR64’, ‘Azucena’, ‘IR74’, and ‘FR13A’. Eleven primer pair combinations specific to the enzymes PstI and MseI were used to generate 530 AFLP markers, 176 of which were polymorphic. Each CMS line revealed a distinct fingerprint. The AFLP marker-based dendrogram depicted genetic variation among the CMS lines. The CMS lines developed in japonica background grouped with ‘Azucena’, a japonica cultivar. None of the CMS lines clustered with ‘FR13A’, a flood-tolerant traditional indica variety. ‘IR64’ was found to be distinct from the other indica CMS lines and clustered with lines developed in its background. The grouping of CMS lines into a few groups is useful for breeders in selecting genetically diverse CMS lines for hybrid rice production and in avoiding test crossing every CMS line empirically. This study demonstrated that AFLP is a powerful and reliable tool in determining the genetic relationships and in producing distinct fingerprints of rice cultivars.
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    URL: http://dx.doi.org/10.1007/s001220050824
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    Over-expression of the oat arginine decarboxylase cDNA in transgenic rice (Oryza sativa L.) affects normal development patterns in vitro and results in putrescine accumulation in transgenic plants (1998)
    Springer
    Theoretical and applied genetics 97 (1998), S. 246-254 
    Details
    ISSN: 1432-2242
    Keywords: Key words Transgenic plants ; Development ; Oryza sativa ; Arginine decarboxylase ; Polyamines
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Transgenic rice (Oryza sativa L.) cell lines and plants expressing an oat arginine decarboxylase (Adc) cDNA under the control of the CaMV 35 S promoter were recovered using particle bombardment. Molecular analyses confirmed stable integration of the transgene and active transcription (mRNA). A four- to sevenfold increase in arginine decarboxylase (ADC) activity was observed in transformed plants compared to wild-type controls. Biochemical analysis of cellular polyamines (PAs) indicated up to fourfold increase in putrescine (Put) levels in transgenic callus and regenerated plants. This is the first report which demonstrates an increase in PA levels in plants engineered with the Adc gene. Implications of this increase are discussed in terms of development, physiology and nutrition. We observed a correlation between high levels of Adc gene expression and inability of callus tissue to develop normally into differentiated plants. This correlates well with reports in other species, in which perturbation of the PA pathway using genes involved in PA biosynthesis results in aberrant phenotypes. We have shown for the first time that PA biosynthesis can be manipulated in cereal species using genetic engineering.
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    URL: http://dx.doi.org/10.1007/s001220050892
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  • 99
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    Construction of a BAC contig containing the xa5 locus in rice (1998)
    Springer
    Theoretical and applied genetics 97 (1998), S. 1120-1124 
    Details
    ISSN: 1432-2242
    Keywords: Key words Bacterial blight ; Disease resistance ; Physical map ; Oryza sativa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  The recessive gene xa5 confers resistance to bacterial blight in rice. To generate a physical map of the xa5 locus, three RFLP markers RG556, RG207 and RZ390, closely linked to xa5, were used to screen a rice bacterial artificial chromosome (BAC) library. The identified overlapping BAC clones formed two small contigs which were extended to both sides by chromosome walking. The final physical map consisted of 14 BAC clones and covered 550 kb. Genetic analysis with an F2 population showed that two RFLP markers 28N22R and 40F20R, derived from the BAC clones in the contig, flanked the xa5 locus. To further delimit the location of the xa5 locus, RFLP markers RG556 and RG207 were converted to sequence tagged sites and used to perform genetic analysis. The results indicated that the xa5 locus was most likely located between RG207 and RG556. Among the BAC clones in the contig, one clone, 44B4, hybridized to both RG207 and RG556. This suggests that BAC clone 44B4 carried the xa5 locus.
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    URL: http://dx.doi.org/10.1007/s001220050999
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  • 100
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    Characterization of two rice genes for nuclear-encoded chloroplast ribosomal protein L12 and phylogenetic analysis of the acquisition of transit peptides and gene duplication (1998)
    Springer
    Theoretical and applied genetics 97 (1998), S. 110-115 
    Details
    ISSN: 1432-2242
    Keywords: Key words rpl12 ; Oryza sativa ; Expressoin analysis ; Phylogenetic tree
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  We have identified two genes coding for chloroplast ribosomal protein L12 encoded in the nuclear genome of rice (Oryza sativa). These genes were designated rpl12-1 and rpl12-2 (rpl12, ribosomal protein L12). Northern analysis with specific probes revealed that both genes are transcribed. The expression of each gene seems to have a different regulatory machinery. It is also suggested that the expression of rpl12-1 is controlled in an organ-specific manner. The deduced amino-acid sequences of the mature peptide parts are more conserved than those of the transit peptide parts in both monocotyledonous and dicotyledonous plants. A phylogenetic tree was constructed using the nucleotide sequences of the transit peptide region of the rpl12s of reported plant. The tree includes estimates of when the transit peptides were acquired, and when the genes were duplicated, in the course of evolution. According to our hypothesis, the nuclear-translocated chloroplast ribosomal protein L12 gene obtained its transit peptide after the divergence of monocots and dicots, then gene duplications occurred independently in monocots and dicots, and subsequently rice and rye branched apart.
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    URL: http://dx.doi.org/10.1007/s001220050873
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