ALBERT

Description: Ground deformations are among the main volcanic phenomena occurring within the caldera system and pres- ently recorded at different volcanoes worldwide including the Campi Flegrei active caldera (southern Italy). A new stratigraphic, sedimentological and paleontological survey carried out in the central sector of the Campi Flegrei caldera both along the already known La Starza succession and through a new excavated tunnel provided new insights into the ground movement episodes occurred in the last 15 kyr. This study, which has also benefited of unpublished boreholes stratigraphic data, shows that the most uplifted sector of the Campi Flegrei caldera, presently marked by the morphological structure of the La Starza cliff close to the Pozzuoli coastline, was charac- terized by a complex sedimentary evolution. It results from different phases of alternating marine transgressions and regressions, the latter marked by both continental volcanic and/or palustrine/lacustrine sediments. These al- ternations result from the interplay between (i) subsidence and uplift episodes of the caldera floor and (ii) sea level variations during the Holocene. A rest period of volcanism accompanied by a sea level rise determined a sig- nificant submersion phase in about 3000 years between 8.59 and 5.5 ka. This phase was defined by a sea level with a maximum water depth value of 60–80 m and a late stage recording significant episodes of ground move- ments. Subsequently, between 5.5 and 3.5 ka, a ground uplift of about 100 m occurred, with short subsidence around 4.5 ka following the Plinian Agnano-Monte Spina eruption. The net vertical displacement represents the recorded deformation linked with a volcanism period in which ~2.5 km3 of magma were erupted by different vents within the caldera. It is worth to note as the general trend of ground movement through the time indicates a similarity in the pattern, beyond its scale.

Description: Published

Description: 143-158

Description: 1V. Storia eruttiva

Description: JCR Journal

Description: Extreme and inaccessible environments are a new frontier that unmanned and remotely operated ve-hicles can today safely access and monitor. The Lusi mud eruption (NE Java Island, Indonesia) representsone of these harsh environments that are totally unreachable with traditional techniques. Here boilingmud is constantly spewed tens of meters in height and tall gas clouds surround the 100 m wide activecrater. The crater is surrounded by a ~600 m diameter circular zone of hot mud that prevents anyapproach to investigate and sample the eruption site. In order to access this active crater we designedand assembled a multipurpose drone.The Lusi drone is equipped with numerous airborne devices suitable for use on board of other mul-ticopters. During the missions, three cameras can complete 1) video survey, 2) high resolution photo-grammetry of desired and preselected polygons, and 3) thermal photogrammetry surveys with infra-redcamera to locate hotfluids seepage areas or faulted zones. Crater sampling and monitoring operationscan be pre-planned with aflight software, and the pilot is required only for take-off and landing. A winchallows the deployment of gas, mud and water samplers and contact thermometers to be operated withno risk for the aircraft. During the winch operations (that can be performed automatically), the aircrafthovers at a safety height until the tasks controlled by the winch-embedded processor are completed. Thedrone is also equipped with GPS-connected CO2and CH4sensors. Gridded surveys using these devicesallowed obtaining 2D maps of the concentration and distribution of various gasses over the area coveredby theflight path.The device is solid, stable even with significant wind, affordable, and easy to transport. The Lusi dronesuccessfully operated during several expeditions at the ongoing active Lusi eruption site and proved to bean excellent tool to study other harsh or unreachable sites, where operations with more conventionalmethods are too expensive, dangerous or simply impossible

Description: LUSI LAB project, PI A. Mazzini; esearch Council of Norway through itsCenters of Excellence funding scheme, Project Number 223272; BPLS (Badan Penanggulangan Lumpur Sidoarjo, Sidoarjo Mudflow Management Agency)

Description: Published

Description: 26-37

Description: 2IT. Laboratori sperimentali e analitici

Description: JCR Journal

Description: An Mw 6.1, devastating earthquake, on April 6, 2009, struck the Middle Aterno Valley (Abruzzi Apennines, Italy) due to the activation of a poorly known normal fault system. Structural analysis of the fault population and investigation of the relationships with the Quaternary continental deposits through integrated field and laboratory techniques were conducted in order to reconstruct the long-term, tectono-sedimentary evolution of the basin and hypothesize the size of the fault segment. A polyphasic evolution of the Middle Aterno Valley is characterized by a conjugate, ∼E-W and ∼NS-striking fault system, during the early stage of basin development, and by a dip-slip, NW-striking fault system in a later phase. The old conjugate fault system controlled the generation of the largest sedimentary traps in the area and is responsible for the horst and graben structures within the basin. During the Early Pleistocene the E-W and NS system reactivated with dip-slip kinematics. This gave rise to intra-basin bedrock highs and a significant syn-tectonic deposition, causing variable thickness and hiatuses of the continental infill. Subsequently, since the end of the Early Pleistocene, with the inception of the NW-striking fault system, several NW-strands linked into longer splays and their activity migrated toward a leading segment affecting the Paganica-San Demetrio basin: the Paganica-San Demetrio fault alignment. The findings from this work constrain and are consistent with the subsurface basin geometry inferred from previous geophysical investigations. Notably, two major elements of the ∼E-W and ∼NS-striking faults likely act as transfer to the nearby stepping active fault systems or form the boundaries, as geometric complexities, that limit the Paganica-San Demetrio fault segment overall length to 19 ± 3 km. The resulting size of the leading fault segment is coherent with the extent of the 6 April 2009 L'Aquila earthquake causative fault. The positive match between the geologic long-term and coseismic images of the 2009 seismogenic fault highlights that the comprehensive reconstruction of the deformation history offers a unique contribution to the understanding faults seismic potential.

Description: MIUR (Italian Ministry of Education, University and Research) project “FIRB Abruzzo - High-resolution analyses for assessing the seismic hazard and risk of the areas affected by the 6 April 2009 earthquake”, ref. RBAP10ZC8K_005 and RBAP10ZC8K_007, and by Agreement INGV-DPC 2012–2021

Description: Published

Description: 30-66

Description: 2T. Deformazione crostale attiva

Description: JCR Journal

Description: Soil CO2 flux and 222Rn activity measurements may positively contribute to the geochemicalmonitoring of active volcanoes. The influence of several environmental parameters on the gas signals has been substantially demonstrated. Therefore, the implementation of tools capable of removing (or minimising) the contribution of the atmospheric effects from the acquired time series is a challenge in volcano surveillance. Here, we present 4 years-long continuousmonitoring (fromApril 2007 to September 2011) of radon activity and soil CO2 flux collected on the NE flank of Stromboli volcano. Both gases record higher emissions during fall–winter (up to 2700 Bq * m−3 for radon and 750 g m−2 day−1 for CO2) than during spring–summer seasons. Short-time variations on 222Rn activity aremodulated by changes in soil humidity (rainfall), and changes in soil CO2 flux that may be ascribed to variations in wind speed and direction. The spectral analyses reveal diurnal and semi-diurnal cycles on both gases, outlining that atmospheric variations are capable to modify the gas release rate fromthe soil. The long-termsoil CO2 flux shows a slow decreasing trend, not visible in 222Rn activity, suggesting a possible difference in the source depth of the of the gases, CO2 being deeper and likely related to degassing at depth of the magma batch involved in the February–April 2007 effusive eruption. To minimise the effect of the environmental parameters on the 222Rn concentrations and soil CO2 fluxes, two different statistical treatments were applied: the Multiple Linear Regression (MLR) and the Principal Component Regression (PCR). These approaches allow to quantify theweight of each environmental factor on the two gas species and showa strong influence of some parameters on the gas transfer processes through soils. The residual values of radon and CO2 flux, i.e. the values obtained after correction for the environmental influence, were then compared with the eruptive episodes that occurred at Stromboli during the analysed time span (2007–2011) but no clear correlations emerge between soil gas release and volcanic activity. This is probably due to i) the distal location of the monitoring stations with respect to the active craters and to ii) the fact that during the investigated period no major eruptive phenomena (paroxysmal explosion, flank eruption) occurred. Comparison of MLR and PCR methods in time-series analysis indicates thatMLR can bemore easily applied to real time data processing in monitoring of open conduit active volcanoes (like Stromboli) where the transition to an eruptive phase may occur in relatively short times.

Description: This researchwas partly funded by ItalianMinistry of University and Research (MIUR) and by University of Torino-Fondazione Compagnia di San Paolo. Additional fundswere provided by the Italian “Presidenza del Consiglio dei Ministri–Dipartimento della Protezione Civile (DPC)” through the DEVnet Project (a cooperative program between the Departments of Earth Sciences of the University of Torino and the University of Florence) and through the “Potenziamento Monitoraggio Stromboli” project. Additional funds for improving our computing hardware were provided by Fondazione Cassa di Risparmio di Torino.

Description: Published

Description: 65-78

Description: 4V. Processi pre-eruttivi

Description: JCR Journal

Description: Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra (aph(λ)) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion technique to underway spectrophotometry data. We find that Gaussian decomposition provides good estimates (median absolute percentage error, MPE 21–34%) of total chlorophyll-a (TChl-a), total chlorophyll-b (TChl-b), the combination of chlorophyll-c1 and -c2 (Chl-c1/2), photoprotective (PPC) and photosynthetic carotenoids (PSC). This method outperformed one of the matrix inversion algorithms, i.e., singular value decomposition combined with non-negative least squares (SVD-NNLS), in retrieving TChl-b, Chl-c1/2, PSC, and PPC. However, SVD-NNLS enables robust retrievals of specific carotenoids (MPE 37–65%), i.e., fucoxanthin, diadinoxanthin and 19′-hexanoyloxyfucoxanthin, which is currently not accomplished by Gaussian decomposition. More robust predictions are obtained using the Gaussian decomposition method when the observed aph(λ) is normalized by the package effect index at 675 nm. The latter is determined as a function of “packaged” aph(675) and TChl-a concentration, which shows potential for improving pigment retrieval accuracy by the combined use of aph(λ) and TChl-a concentration data. To generate robust estimation statistics for the matrix inversion technique, we combine leave-one-out cross-validation with data perturbations. We find that both approaches provide useful information on pigment distributions, and hence, phytoplankton community composition indicators, at a spatial resolution much finer than that can be achieved with discrete samples.

Description: The purpose of this list of digital platforms is to facilitate the research of scientific data (articles, books, conferences, websites, indexers, etc.) by students of all undergraduate levels. The interface of platforms have similarities and because of this, low degree of difficulty of use. I emphasize that the key to an excellent literature search on digital platforms is to choose the right "keyword".

Description: Among the most derived calanoid copepod superfamily Clausocalanoidea about half of the genera belong to the so-called “Bradfordian” families that are defined by the presence of sensory setae at the maxilla and maxilliped. Many of these “Bradfordian” taxa are insufficiently well described, because their taxonomy is complicated and phylogenetic relationships are not completely resolved. We therefore aimed to unravel their phylogenetic relationships using molecular multi-gene analyses. We conducted molecular multi-gene analysis on 26 species from 15 genera representing all seven “Bradfordian” families using five gene fragments, the nuclear ribosomal 18S, 28S and internal transcribed spacer 2 DNA, and mitochondrial cytochrome c oxidase subunit I and cytochrome b. The monophyly of “Bradfordians” as one lineage in the superfamily Clausocalanoidea was supported by Maximum Likelihood and Bayesian Inference multi-gene analyses. Except for the support of species belonging to the same genus and specimens belonging to the same species, no phylogenetic relationships among genera and families were supported. The impossibility of resolving phylogenetic relationships among “Bradfordian” genera and families may be due to the young age or fast radiation of “Bradfordians” within the mostly derived calanoid superfamily Clausocalanoidea. Therefore, mutation rates might be not sufficient to track phylogenetic relationships. Evidence on phylogenetic relationships between genera and families remain unresolved after implementing integrated morphological and molecular taxonomic approaches.

Description: Life cycle and reproduction of Calanus hyperboreus were studied during a year of record low ice cover in the southeastern Beaufort Sea. Stages CIV, adult females and CV dominated the overwintering population, suggesting a 2- to 3-year life cycle. Within two spring-summer months in the upper water column females filled their energy reserves before initiating their downward seasonal migration. From February to March, vigorous reproduction (20–65 eggs f−1 d−1) delivered numerous eggs (29 000 eggs m−2) at depth and nauplii N1-N3 (17 000 ind. m−2) in the water column. However, CI copepodite recruitment in May, coincident with the phytoplankton bloom, was modest in Amundsen Gulf compared to sites outside the gulf. Consequently, C. hyperboreus abundance and biomass stagnated throughout summer in Amundsen Gulf. As a mismatch between the first-feeding stages and food was unlikely under the favourable feeding conditions of April-May 2008, predation on the egg and larval stages in late winter presumably limited subsequent recruitment and population growth. Particularly abundant in Amundsen Gulf, the copepods Metridia longa and C. glacialis were likely important consumers of C. hyperboreus eggs and nauplii. With the ongoing climate-driven lengthening of the ice-free season, intensification of top-down control of C. hyperboreus recruitment by thriving populations of mesopelagic omnivores and carnivores like M. longa may counteract the potential benefits of increased primary production over the Arctic shelves margins for this key prey of pelagic fish, seabirds and the bowhead whale.

Description: Time series derived from paleoclimate archives are often irregularly sampled in time and thus not analysable using standard statistical methods such as correlation analyses. Although measures for the similarity between time series have been proposed for irregular time series, they do not account for the time scale dependency of the relationship. Stochastically distributed temporal sampling irregularities act qualitatively as a low-pass filter reducing the influence of fast variations from frequencies higher than about 0.5 (Δtmax) − 1, where Δtmax is the maximum time interval between observations. This may lead to overestimated correlations if the true correlation increases with time scale. Typically, correlations are underestimated due to a non-simultaneous sampling of time series. Here, we investigated different techniques to estimate time scale dependent correlations of weakly irregularly sampled time series, with a particular focus on different resampling methods and filters of varying complexity. The methods were tested on ensembles of synthetic time series that mimic the characteristics of Holocene marine sediment temperature proxy records. We found that a linear interpolation of the irregular time series onto a regular grid, followed by a simple Gaussian filter was the best approach to deal with the irregularity and account for the time scale dependence. This approach had both, minimal filter artefacts, particularly on short time scales, and a minimal loss of information due to filter length.

Description: Rapid declines in Arctic sea ice have captured attention and pose significant challenges to a variety of stakeholders. There is a rising demand for Arctic sea ice prediction at daily to seasonal time scales, which is partly a sea ice initial condition problem. Thus, a multivariate data assimilation that integrates sea ice observations to generate realistic and skillful model initialization is needed to improve predictive skill of Arctic sea ice. Sea ice data assimilation is a relatively new research area. In this review paper, we focus on two challenges for implementing multivariate data assimilation systems for sea ice forecast. First, to address the challenge of limited spatiotemporal coverage and large uncertainties of observations, we discuss sea ice parameters derived from satellite remote sensing that (1) have been utilized for improved model initialization, including concentration, thickness and drift, and (2) are currently under development with the potential for enhancing the predictability of Arctic sea ice, including melt ponds and sea ice leads. Second, to strive to generate the “best” estimate of sea ice initial conditions by combining model simulations/forecasts and observations, we review capabilities and limitations of different data assimilation techniques that have been developed and used to assimilate observed sea ice parameters in dynamical models.

Description: Arctic and subarctic regions are sensitive to climate change and, reversely, provide dramatic feedbacks to the global climate. With a focus on discovering paleoclimate and paleoceanographic evolution in the Arctic and Northwest Pacific Oceans during the last 20,000 years, we proposed this German–Sino cooperation program according to the announcement “Federal Ministry of Education and Research (BMBF) of the Federal Republic of Germany for a German–Sino cooperation program in the marine and polar research”. Our proposed program integrates the advantages of the Arctic and Subarctic marine sediment studies in AWI (Alfred Wegener Institute) and FIO (First Institute of Oceanography). For the first time, the collection of sediment cores can cover all climatological key regions in the Arctic and Northwest Pacific Oceans. Furthermore, the climate modeling work at AWI enables a “Data-Model Syntheses”, which are crucial for exploring the underlying mechanisms of observed changes in proxy records.

Description: An intercomparison of radiance and irradiance ocean color radiometers (the second laboratory comparison exercise—LCE-2) was organized within the frame of the European Space Agency funded project Fiducial Reference Measurements for Satellite Ocean Color (FRM4SOC) May 8–13, 2017 at Tartu Observatory, Estonia. LCE-2 consisted of three sub-tasks: (1) SI-traceable radiometric calibration of all the participating radiance and irradiance radiometers at the Tartu Observatory just before the comparisons; (2) indoor, laboratory intercomparison using stable radiance and irradiance sources in a controlled environment; (3) outdoor, field intercomparison of natural radiation sources over a natural water surface. The aim of the experiment was to provide a link in the chain of traceability from field measurements of water reflectance to the uniform SI-traceable calibration, and after calibration to verify whether di�erent instruments measuring the same object provide results consistent within the expected uncertainty limits. This paper describes the third phase of LCE-2: The results of the field experiment. The calibration of radiometers and laboratory comparison experiment are presented in a related paper of the same journal issue. Compared to the laboratory comparison, the field intercomparison has demonstrated substantially larger variability between freshly calibrated sensors, because the targets and environmental conditions during radiometric calibration were di�erent, both spectrally and spatially. Major di�erences were found for radiance sensors measuring a sunlit water target at viewing zenith angle of 139� because of the di�erent fields of view. Major di�erences were found for irradiance sensors because of imperfect cosine response of di�users. Variability between individual radiometers did depend significantly also on the type of the sensor and on the specific measurement target. Uniform SI traceable radiometric calibration ensuring fairly good consistency for indoor, laboratory measurements is insu�cient for outdoor, field measurements, mainly due to the di�erent angular variability of illumination. More stringent specifications and individual testing of radiometers for all relevant systematic e�ects (temperature, nonlinearity, spectral stray light, etc.) are needed to reduce biases between instruments and better quantify measurement uncertainties.

Description: An intercomparison of radiance and irradiance ocean color radiometers (The Second Laboratory Comparison Exercise—LCE-2) was organized within the frame of the European Space Agency funded project Fiducial Reference Measurements for Satellite Ocean Color (FRM4SOC) May 8–13, 2017 at Tartu Observatory, Estonia. LCE-2 consisted of three sub-tasks: 1) SI-traceable radiometric calibration of all the participating radiance and irradiance radiometers at the Tartu Observatory just before the comparisons; 2) Indoor intercomparison using stable radiance and irradiance sources in controlled environment; and 3) Outdoor intercomparison of natural radiation sources over terrestrial water surface. The aim of the experiment was to provide one link in the chain of traceability from field measurements of water reflectance to the uniform SI-traceable calibration, and after calibration to verify whether di�erent instruments measuring the same object provide results consistent within the expected uncertainty limits. This paper describes the activities and results of the first two phases of LCE-2: the SI-traceable radiometric calibration and indoor intercomparison, the results of outdoor experiment are presented in a related paper of the same journal issue. The indoor experiment of the LCE-2 has proven that uniform calibration just before the use of radiometers is highly e�ective. Distinct radiometers from di�erent manufacturers operated by di�erent scientists can yield quite close radiance and irradiance results (standard deviation s 〈 1%) under defined conditions. This holds when measuring stable lamp-based targets under stationary laboratory conditions with all the radiometers uniformly calibrated against the same standards just prior to the experiment. In addition, some unification of measurement and data processing must be settled. Uncertaint of radiance and irradiance measurement under these conditions largely consists of the sensor’s calibration uncertainty and of the spread of results obtained by individual sensors measuring the same object.

Description: Real-time quality-controlled surface current data derived from X-Band marine radar (MR) measurements were evaluated to estimate their operational reliability. The presented data were acquired by the standard commercial o�-the-shelf MR-based sigma s6 WaMoS® II (WaMoS® II) deployed onboard the German Research vessel Polarstern. The measurement reliability is specified by an IQ value obtained by the WaMoS® II real-time quality control (rtQC). Data which pass the rtQC without objection are assumed to be reliable. For these data sets accuracy and correlation with corresponding vessel-mounted acoustic Doppler current profiler (ADCP) measurements are determined. To reduce potential misinterpretation due to short-term oceanic variability/turbulences, the evaluation of the WaMoS® II accuracy was carried out based on sliding means over 20 min of the reliable data only. The associated standard deviation �WaMoS = 0.02 m/s of the meanWaMoS® II measurements reflect a high precision of the measurement and the successful rtQC during di�erent wave, current and weather conditions. The direct comparison of 7272 WaMoS® II/ADCP northward and eastward velocity data pairs yield a correlation of r � 0.94, with jbiasDj � 0.06 m/s and �S = 0.05 m/s. This confirms that the MR-based surface current measurements are accurate and reliable.

Description: Hyperiid amphipods are predatory pelagic crustaceans that are particularly prevalent in high-latitude oceans. Many species are likely to have co-evolved with soft-bodied zooplankton groups such as salps and medusae, using them as substrate, for food, shelter or reproduction. Compared to other pelagic groups, such as fish, euphausiids and soft-bodied zooplankton, hyperiid amphipods are poorly studied especially in terms of their distribution and ecology. Hyperiids of the genus Themisto, comprising seven distinct species, are key players in temperate and cold-water pelagic ecosystems where they reach enormous levels of biomass. In these areas, they are important components of marine food webs, and they are major prey for many commercially important fish and squid stocks. In northern parts of the Southern Ocean, Themisto are so prevalent that they are considered to take on the role that Antarctic krill play further south. Nevertheless, although they are around the same size as krill, and may also occur in swarms, their feeding behaviour and mode of reproduction are completely different, hence their respective impacts on ecosystem structure differ. Themisto are major predators of meso- and macrozooplankton in several major oceanic regions covering shelves to open ocean from the polar regions to the subtropics. Based on a combination of published and unpublished occurrence data, we plot out the distributions of the seven species of Themisto. Further, we consider the different predators that rely on Themisto for a large fraction of their diet, demonstrating their major importance for higher trophic levels such as fish, seabirds and mammals. For instance, T. gaudichaudii in the Southern Ocean comprises a major part of the diets of around 80 different species of squid, fish, seabirds and marine mammals, while T. libellula in the Bering Sea and Greenland waters is a main prey item for commercially exploited fish species. We also consider the ongoing and predicted range expansions of Themisto species in light of environmental changes. In northern high latitudes, sub-Arctic Themisto species are replacing truly Arctic, ice-bound, species. In the Southern Ocean, a range expansion of T. gaudichaudii is expected as water masses warm, impacting higher trophic levels and biogeochemical cycles. We identify the many knowlegde gaps that must be filled in order to evaluate, monitor and predict the ecological shifts that will result from the changing patterns of distribution and abundance of this important pelagic group.

Description: Ostracods are small-sized crustaceans, which inhabit all aquatic ecosystems and, because they have a comprehensive fossil record, are important environmental and paleoenvironmental indicators. However several aspects of the ecology of modern species (the basis for the paleontological investigations) are still controversial. Previous authors have raised the hypothesis that benthic ostracods, because of their calcified carapaces, are unable to survive below the Carbonate Compensation Depth (CCD). Herein we test this hypothesis based on (1) ostracods newly collected from the Kuril-Kamchatka Trench at depths far below the CCD during the KuramBio II expedition; and (2) a compilation of all previously published records of (geologically) Recent deep-sea Ostracoda in regions deeper than 3500 m. The KuramBio II expedition provided hundreds of living, hadal ostracods from at least 30 species and 21 genera from thousands of meters deeper than the CCD in the Kuril-Kamchatka Trench region. Additionally, the KuramBio II expedition provided the deepest record (9307 m) of a living ostracod with calcified carapaces: specimens of the genus Krithe. Finally, the compilation of all published information on living ostracods show that a highly diverse assemblage both at high and low taxonomic levels (2 subclasses, 4 suborders, 25 families, 89 genera and at least 206 species) occur below 3500 m. Therefore, we conclude that contrary to previous beliefs, the new data from the Kuril-Kamchatka Trench and the compilation of the literature show that ostracods do live and are even sometimes abundant below the CCD.

Description: Coring sediments in subglacial aquatic environments offers unique opportunities for research on paleo-environments and paleo-climates because it can provide data from periods even earlier than ice cores, as well as the overlying ice histories, interactions between ice and the water system, life forms in extreme habitats, sedimentology, and stratigraphy. However, retrieving sediment cores from a subglacial environment faces more difficulties than sediment coring in oceans and lakes, resulting in low yields from the most current subglacial sediment coring methods. The coring tools should pass through a hot water-drilled access borehole, then the water column, to reach the sediment layers. The access boreholes are size-limited by the hot water drilling tools and techniques. These holes are drilled through ice up to 3000–4000 m thick, with diameters ranging from 10–60 cm, and with a refreezing closure rate of up to 6 mm/h after being drilled. Several purpose-built streamline corers have been developed to pass through access boreholes and collect the sediment core. The main coring objectives are as follows: (i) To obtain undisturbed water–sediment cores, either singly or as multi-cores and (ii) to obtain long cores with minimal stratigraphic deformation. Subglacial sediment coring methods use similar tools to those used in lake and ocean coring. These methods include the following: Gravity coring, push coring, piston coring, hammer or percussion coring, vibrocoring, and composite methods. Several core length records have been attained by different coring methods, including a 290 cm percussion core from the sub-ice-shelf seafloor, a 400 cm piston core from the sub-ice-stream, and a 170 cm gravity core from a subglacial lake. There are also several undisturbed water–sediment cores that have been obtained by gravity corers or hammer corers. Most current coring tools are deployed by winch and cable facilities on the ice surface. There are three main limitations for obtaining long sediment cores which determines coring tool development, as follows: Hot-water borehole radial size restriction, the sedimentary structure, and the coring techniques. In this paper, we provide a general view on current developments in coring tools, including the working principles, corer characteristics, operational methods, coring site locations, field conditions, coring results, and possible technical improvements. Future prospects in corer design and development are also discussed.

Description: Air temperatures in the Arctic have increased substantially over the last decades, which has extensively altered the properties of the land surface. Capturing the state and dynamics of Land Surface Temperatures (LSTs) at high spatial detail is of high interest as LST is dependent on a variety of surficial properties and characterizes the land–atmosphere exchange of energy. Accordingly, this study analyses the influence of different physical surface properties on the long-term mean of the summer LST in the Arctic Mackenzie Delta Region (MDR) using Landsat 30 m-resolution imagery between 1985 and 2018 by taking advantage of the cloud computing capabilities of the Google Earth Engine. Multispectral indices, including the Normalized Difference Vegetation Index (NDVI), Normalized Difference Water Index (NDWI) and Tasseled Cap greenness (TCG), brightness (TCB), and wetness (TCW) as well as topographic features derived from the TanDEM-X digital elevation model are used in correlation and multiple linear regression analyses to reveal their influence on the LST. Furthermore, surface alteration trends of the LST, NDVI, and NDWI are revealed using the Theil-Sen (T-S) regression method. The results indicate that the mean summer LST appears to be mostly influenced by the topographic exposition as well as the prevalent moisture regime where higher evapotranspiration rates increase the latent heat flux and cause a cooling of the surface, as the variance is best explained by the TCW and northness of the terrain. However, fairly diverse model outcomes for different regions of the MDR (R2 from 0.31 to 0.74 and RMSE from 0.51 °C to 1.73 °C) highlight the heterogeneity of the landscape in terms of influential factors and suggests accounting for a broad spectrum of different factors when modeling mean LSTs. The T-S analysis revealed large-scale wetting and greening trends with a mean decadal increase of the NDVI/NDWI of approximately +0.03 between 1985 and 2018, which was mostly accompanied by a cooling of the land surface given the inverse relationship between mean LSTs and vegetation and moisture conditions. Disturbance through wildfires intensifies the surface alterations locally and lead to significantly cooler LSTs in the long-term compared to the undisturbed surroundings.

Description: In this work, laboratory tests with live bivalves as well as the conceptual design of additively manufactured surrogate models are presented. The overall task of this work is to develop a surrogate best fitting to the live mussels tested in accordance to the identified surface descriptor, i.e., the Abbott–Firestone Curve, and to the hydrodynamic behaviour by means of drag and inertia coefficients. To date, very few investigations have focused on loads from currents as well as waves. Therefore, tests with a towing carriage were carried out in a wave flume. A custom-made rack using mounting clamps was built to facilitate carriage-run tests with minimal delays. Blue mussels (Mytilus edulis) extracted from a site in Germany, which were kept in aerated seawater to ensure their survival for the test duration, were used. A set of preliminary results showed drag and inertia coefficients CD and CM ranging from 1.16–3.03 and 0.25 to 1.25. To derive geometrical models of the mussel dropper lines, 3-D point clouds were prepared by means of 3-D laser scanning to obtain a realistic surface model. Centered on the 3-D point cloud, a suitable descriptor for the mass distribution over the surface was identified and three 3-D printed surrogates of the blue mussel were developed for further testing. These were evaluated regarding their fit to the original 3-D point cloud of the live blue mussels via the chosen surface descriptor.

Description: Enrichment of the oceans with CO2 may be beneficial for some marine phytoplankton, including harmful algae. Numerous laboratory experiments provided valuable insights into the effects of elevated pCO2 on the growth and physiology of harmful algal species, including the production of phycotoxins. Experiments close to natural conditions are the next step to improve predictions, as they consider the complex interplay between biotic and abiotic factors that can confound the direct effects of ocean acidification. We therefore investigated the effect of ocean acidification on the occurrence and abundance of phycotoxins in bulk plankton samples during a long-term mesocosm experiment in the Gullmar Fjord, Sweden, an area frequently experiencing harmful algal blooms. During the experimental period, a total of seven phycotoxin-producing harmful algal genera were identified in the fjord, and in accordance, six toxin classes were detected. However, within the mesocosms, only domoic acid and the corresponding producer Pseudo-nitzschia spp. was observed. Despite high variation within treatments, significantly higher particulate domoic acid contents were measured in the mesocosms with elevated pCO2. Higher particulate domoic acid contents were additionally associated with macronutrient limitation. The risks associated with potentially higher phycotoxin levels in the future ocean warrants attention and should be considered in prospective monitoring strategies for coastal marine waters.

Description: Essential Biodiversity Variables (EBV) are fundamental variables that can be used for assessing biodiversity change over time, for determining adherence to biodiversity policy, for monitoring progress towards sustainable development goals, and for tracking biodiversity responses to disturbances and management interventions. Data from observations or models that provide measured or estimated EBV values, which we refer to as EBV data products, can help to capture the above processes and trends and can serve as a coherent framework for documenting trends in biodiversity. Using primary biodiversity records and other raw data as sources to produce EBV data products depends on cooperation and interoperability among multiple stakeholders, including those collecting and mobilising data for EBVs and those producing, publishing and preserving EBV data products. Here, we encapsulate ten principles for the current best practice in EBV-focused biodiversity informatics as ‘The Bari Manifesto’, serving as implementation guidelines for data and research infrastructure providers to support the emerging EBV operational framework based on trans-national and cross-infrastructure scientific workflows. The principles provide guidance on how to contribute towards the production of EBV data products that are globally oriented, while remaining appropriate to the producer's own mission, vision and goals. These ten principles cover: data management planning; data structure; metadata; services; data quality; workflows; provenance; ontologies/vocabularies; data preservation; and accessibility. For each principle, desired outcomes and goals have been formulated. Some specific actions related to fulfilling the Bari Manifesto principles are highlighted in the context of each of four groups of organizations contributing to enabling data interoperability - data standards bodies, research data infrastructures, the pertinent research communities, and funders. The Bari Manifesto provides a roadmap enabling support for routine generation of EBV data products, and increases the likelihood of success for a global EBV framework.

Description: Recent studies pointed to a high ice nucleating activity (INA) in the Arctic sea surface microlayer (SML). However, related chemical information is still sparse. In the present study, INA and free glucose concentrations were quantified in Arctic SML and bulk water samples from the marginal ice zone, the ice-free ocean, melt ponds, and open waters within the ice pack. T50 (defining INA) ranged from −17.4 to −26.8 °C. Glucose concentrations varied from 0.6 to 51 μg/L with highest values in the SML from the marginal ice zone and melt ponds (median 16.3 and 13.5 μg/L) and lower values in the SML from the ice pack and the ice-free ocean (median 3.9 and 4.0 μg/L). Enrichment factors between the SML and the bulk ranged from 0.4 to 17. A positive correlation was observed between free glucose concentration and INA in Arctic water samples (T50(°C) = (−25.6 ± 0.6) + (0.15 ± 0.04)·Glucose(μg/L), RP = 0.66, n = 74). Clustering water samples based on phytoplankton pigment composition resulted in robust but different correlations within the four clusters (RP between 0.67 and 0.96), indicating a strong link to phytoplankton-related processes. Since glucose did not show significant INA itself, free glucose may serve as a potential tracer for INA in Arctic water samples.

Description: Multiple toxic and bioactive compounds produced by Alexandrium spp. cause adverse effects on bivalves, but these effects are frequently difficult to attribute to a single compound class. To disentangle the effect of neurotoxic vs lytic secondary metabolites, we exposed blue mussels to either a paralytic shellfish toxin (PST) producing Alexandrium spp. strain, or to an exclusively lytic compound (LC) producing strain, or a strain containing both compound classes, to evaluate the time dependent effects after 3 and 7 days of feeding. Tested parameters comprised signs of paralysis, feeding activity, and immune cell integrity (hemocyte numbers and viability; lysosomal membrane destabilization) and function (ROS production). Both compound classes caused paralysis and immune impairment. The only effect attributable exclusively to PST was increased phagocytic activity after 3 days and impaired feeding activity after 7 days, which curtailed toxin accumulation in digestive glands. Paralysis signals and lysosomal membrane destabilization were more closely, but not exclusively, matched with LC exposure. Effects on circulating hemocyte integrity and immune related functions were mostly transient or remain stable within 7 days; except for increased lysosomal labialization and decreased extracellular ROS production when mussels were exposed to the toxin combination. M. edulis displays adaptive fitness traits to survive and maintain immune capacity upon prolonged exposure to environmentally relevant concentrations of PST and/or LC producing Alexandrium strains.

Description: The term “Dimension Stone” refers to natural stone that has been quarried, selected and processed into specific sizes or shapes, with or without one or more mechanically dressed or finished surfaces, for use as building facing, curbing, paving stone, monuments and memorials, and various industrial products. The dimension stone industry is currently increasing the volume of its activities: based on a prudent medium-term development forecast, the net product could reach one hundred million tons in 2020. For this reason, geoscientists and stakeholders need to reason about methods and technologies in the dimension stone sector and how to operate responsibly and sustainably in accordance with the following geoethical values. After a definition of geoethics and an overview of the dimension stone industry, the paper focuses on fundamental values of geoethics as stated in the Cape Town Statement on Geoethics. More precisely, geoethical values have been referred to real and practical cases of dimension stone subsectors, by presenting some examples recorded in Sardinia (Italy). This region has a long history of production of ornamental stones. Finally, tips and suggestions on how geoscientists (in particular geologists and mining engineers) can help the dimension stone sector in a geoethical way, i.e., responsibly and sustainably are herein offered.

Description: Published

Description: 101468

Description: 1TR. Georisorse

Description: 7SR AMBIENTE – Servizi e ricerca per la società

Description: 1TM. Formazione

Description: 3TM. Comunicazione

Description: JCR Journal

Description: We investigated the geochemical behaviour of major and Rare Earth Elements (REE), together with oxygen and deuterium isotopic composition in the aquifer of Vulcano, the southernmost island of the Aeolian archipelago (Italy). Studied wells, located at different distances from the crater, are characterised by different contributions of the rising volcanic fluids. In particular, those located in the proximity of La Fossa crater are affected by a strong interaction with volcanic-hydrothermal fluids and show REE behaviour similar to that of fresh rocks, suggesting a congruent dissolution of the solid matrix. Samples from the other wells, located in an area where the volcanic deposits are hydrothermally altered as an “advanced argillic facies”, are enriched in HREE and mirror the corresponding depletion observed in the altered rocks. Moreover, the different grade of interaction with hydrothermal fluids determines the main ligand that complexes the REE. The main ligand is CO3 2– in the wells that are more directly affected by hydrothermal circulation, whereas SO4 2− dominates in those located at greater distances from La Fossa crater. This information provides further clues to the complex groundwater circulation model of Vulcano Island, which is regulated by the variable mixing and interacting of rising volcano-hydrothermal fluids, meteoric infiltration and seawater, differently interacting with fresh and altered rocks.

Description: Published

Description: 121-129

Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici

Description: JCR Journal

Description: At present, the urban population has to cope with the effects caused from Urban Heat Island (UHI), poor air quality and increased frequency and/or intensity of extreme weather and climate events. The expected increase of these extremes in areas of the planet and the way to adapt to them has emphasized the need to investigate in detail the climate of the cities. Local vulnerability and risk assessments, supported by using regional climate models at very high resolution, are key to support development and implementation of effective local adaptation measures to make well-adapted and climate-resilient cities, i.e. more sustainable ones. This study aims to provide some quantitative information on the effectiveness of main local adaptation measures to reduce the magnitude of UHI, in terms of temperature and energy fluxes. The investigation was conducted by adopting the TEB 1D model for the Toulouse city case-study. Different urban configurations and adaptation measures have been considered in the model set up. The results confirm that different adaptation measures may reduce the temperature on the town elements during the daylight hours; among the different measures, the green roof prevent the radiative cooling, increasing the roof night temperature and contributing to the night UHI.

Description: Published

Description: 662-673

Description: 4A. Oceanografia e clima

Description: JCR Journal

Description: The Great Burma earthquake (MsGR 8.0; Ms 7.6–7.7) occurred on May 23rd, 1912, and was one of the most remarkable early 1900's seismic events in Asia as described by Gutenberg and Richter (1954). The earthquake, focused near Maymyo, struck the Northern Shan State in eastern Myanmar. Contemporary evaluation of damage distribution and oral accounts led to a correlation between the earthquake and the topographically prominent Kyaukkyan Fault near the western margin of the Shan Plateau, although direct evidence has never been reported. This study aims to find evidence of paleoseismic activity, and to better understand the relationship between the 1912 earthquake and the Kyaukkyan Fault. Paleoseismic trenching along the Kyaukkyan Fault revealed evidence of several surface rupturing events. The northernmost trench exposes at least two visible rupture events since 4660 ± 30 BP: an older rupture stratigraphically constrained by AMS 14C dating to between 4660 ± 30 BP and 1270 ± 30 BP, and a younger rupture formed after 1270 ± 30 BP. The presence of pottery, bricks and cookingrelated charcoal in the younger faulted stratigraphy demonstrates Kyaukkyan Fault activity within human times, and a possible correlation between the younger rupture and the 1912 Maymyo earthquake is not excluded. The southern paleoseismic trench, within a broad transtensional basin far from bounding faults, exposes two (undated) surface ruptures. Further study is required to correlate those ruptures to the events dated in the north. These preliminary paleoseismological results constitute the first quantitative evidence of paleoseismic activity along the northern ~160 km of the Kyaukkyan Fault, and support existing evidence that the Kyaukkyan Fault is an active but slow-slipping structure with a long interseismic period.

Description: Published

Description: 75-86

Description: 2T. Deformazione crostale attiva

Description: JCR Journal

Description: This study reports the complex textural and chemical features of K-feldspar megacrysts (up to 5 cm long) hosted in trachydacitic lava flows, lava domes, and coulées from Mt. Amiata volcano (Tuscan Magmatic Province, Central Italy). Backscattering and cathodoluminescence imaging, coupled with core to rim major and trace elements patterns, reveal a complex zoning, and resorption surfaces associated with sharp chemical variations (e.g., Sr and Ba). These zoning patterns originated by disequilibrium and re-equilibration events, related to the repetitive influx of mafic magmas or convective motions in the trachydacitic magma reservoir. Multiple mafic magma refilling events are also supported by the field occurrence of abundant microgranular magmatic enclaves in the studied products. Our results highlight that the abnormal dimension of the studied K-feldspars originates by the interplay between petrological and kinetic processes involving: (i) extensive dissolution; (ii) heterogeneous nucleation; (iii) alternation of spasmodic growth events in disequilibrium and near-equilibrium crystallization. Repetitive influx of hotter magmas and reheating can determine the thermal condition to the growth of few, large K-felspar megacrysts. Also, the strong textural and chemical similarities observed in the K-feldspar megacrysts from Mt. Amiata volcanic rocks and Mt. Capanne monzogranite (Elba Island, Central Italy) support the hypothesis of a phenocrystic origin of intrusive K-feldspar megacrysts.

Description: Tuscan regional authority (Regione Toscana) in the framework of the LAMMA-CNR Project “Monografia vulcanologica del Monte Amiata”

Description: Published

Description: 569-583

Description: 4V. Processi pre-eruttivi

Description: JCR Journal

Description: The thermal state of polar continental crust plays a crucial role for understanding the stability and thickness of large ice sheets, the visco-elastic response of the solid Earth due to unloading when large ice caps melt and, in turn, the accuracy of future sea-level rise prediction. Various studies demonstrate the need for precise measurements and estimation of geothermal heat flow (GHF) in Antarctica for better constrained boundary conditions to enhance the ice sheet model performance. This study provides ground-truth for regional indirect GHF estimates in the Amundsen Sea Embayment, which is part of the West Antarctic Rift System, by presenting in situ temperature measurements in continental shelf sediments. Our results show regionally elevated and heterogeneous GHF (mean of 65 mWm−2) in the Amundsen Sea Embayment. Considering thermal blanketing effects, induced by inflow of warmer water and sedimentary processes, the estimated GHF ranges between 65 mWm−2and 95 mWm−2.

Description: The deglacial history of CO2 release from the deep North Pacific remains unresolved. This is due to conflicting indications about subarctic Pacific ventilation changes based on various marine proxies, especially for Heinrich Stadial 1 (HS-1) when a rapid atmospheric CO2 rise occurs. Here, we use a complex Earth System Model to investigate the deglacial North Pacific overturning and its control on ocean stratification. Our results show an enhanced intermediate-to-deep ocean stratification coeval with intensified North Pacific Intermediate Water (NPIW) formation during HS-1, compared to the Last Glacial Maximum. The stronger NPIW formation causes lower salinities and higher temperatures at intermediate depths. By lowering NPIW densities, this enlarges vertical density gradient and thus enhances intermediate-to-deep ocean stratification during HS-1. Physically, this process prevents the North Pacific deep waters from a better communication with the upper oceans, thus prolongs the existing isolation of glacial Pacific abyssal carbons during HS-1.

Description: The interaction between ocean warming, hypoxia and hypercapnia, suggested by climate projections, may push an organism earlier to the limits of its thermal tolerance window. In a previous study on juveniles of green abalone (Haliotis fulgens), combined exposure to hypoxia and hypercapnia during heat stress induced a lowered critical thermal maximum (CTmax), indicated by constrained oxygen consumption, muscular spams and loss of attachment. Thus, the present study investigated the cell physiology in foot muscle of H. fulgens juveniles exposed to acute warming (18 °C to 32 °C at +3 °C day−1) under hypoxia (50% air saturation) and hypercapnia (~1000 μatm PCO2), alone and in combination, to decipher the mechanisms leading to functional loss in this tissue. Under exposure to either hypoxia or hypercapnia, citrate synthase (CS) activity decreased with initial warming, in line with thermal compensation, but returned to control levels at 32 °C. The anaerobic enzymes lactate and tauropine dehydrogenase increased only under hypoxia at 32 °C. Under the combined treatment, CS overcame thermal compensation and remained stable overall, indicating active mitochondrial regulation under these conditions. Limited accumulation of anaerobic metabolites indicates unchanged mode of energy production. In all treatments, upregulation of Hsp70 mRNA was observed already at 30 °C. However, lack of evidence for Hsp70 protein accumulation provides only limited support to thermal denaturation of proteins. We conclude that under combined hypoxia and hypercapnia, metabolic depression allowed the H. fulgens musculature to retain an aerobic mode of metabolism in response to warming but may have contributed to functional loss. Keywords: 1H NMR spectroscopy; Citrate synthase; CTmax; Hsp70; Lactate dehydrogenase; Tauropine; Tauropine dehydrogenase

Description: Automatic detection of icebergs in satellite images is regarded a useful tool to provide information necessary for safety in Arctic shipping or operations over large ocean areas in near-real time. In this work, we investigated the feasibility of automatic iceberg detection in Sentinel-1 Extra Wide Swath (EWS) SAR images which follow the preferred image mode in operational ice charting. As test region, we selected the Barents Sea where the size of many icebergs is on the order of the spatial resolution of the EWS-mode. We tested a new approach for a detection scheme. It is based on a combination of a filter for enhancing the contrast between icebergs and background, subsequent blob detection, and final application of a Constant False Alarm Rate (CFAR) algorithm. The filter relies mainly on the HV-polarized intensity which often reveals a larger difference between icebergs and sea ice or open water. The blob detector identifies locations of potential icebergs and thus shortens computation time. The final detection is performed on the identified blobs using the CFAR algorithm. About 2000 icebergs captured in fast ice were visually identified in Sentinel-2 Multi Spectral Imager (MSI) data and exploited for an assessment of the detection scheme performance using confusion matrices. For our performance tests, we used four Sentinel-1 EWS images. For judging the effect of spatial resolution, we carried out an additional test with one Sentinel-1 Interferometric Wide Swath (IWS) mode image. Our results show that only 8–22 percent of the icebergs could be detected in the EWS images, and over 90 percent of all detections were false alarms. In IWS mode, the number of correctly identified icebergs increased to 38 percent. However, we obtained a larger number of false alarms in the IWS image than in the corresponding EWS image. We identified two problems for iceberg detection: 1) with the given frequency–polarization combination, not all icebergs are strong scatterers at HV-polarization, and (2) icebergs and deformation structures present on fast ice can often not be distinguished since both may reveal equally strong responses at HV-polarization.

Description: An approach is presented for high-field MRI studies of the cardiovascular system (CVS) of a marine crustacean, the edible crab Cancer pagurus, submerged in highly conductive seawater. Structure and function of the CVS were investigated at 9.4 T. Cardiac motion was studied using self-gated CINE MRI. Imaging protocols and radio-frequency coil arrangements were tested for anatomical imaging. Haemolymph flow was quantified using phase-contrast angiography. Signal-to-noise-ratios and flow velocities in afferent and efferent branchial veins were compared with Student’s t test (n = 5). Seawater induced signal losses were dependent on imaging protocols and RF coil setup. Internal cardiac structures could be visualized with high spatial resolution within 8 min using a gradient-echo technique. Variations in haemolymph flow in different vessels could be determined over time. Maximum flow was similar within individual vessels and corresponded to literature values from Doppler measurements. Heart contractions were more pronounced in lateral and dorso-ventral directions than in the anterior–posterior direction. Choosing adequate imaging protocols in combination with a specific RF coil arrangement allows to monitor various parts of the crustacean CVS with exceptionally high spatial resolution despite the adverse effects of seawater at 9.4 T.

Description: The region of the Filchner Outflow System (FOS) in the southeastern Weddell Sea is characterized by intensive and complex interactions of different water masses. Dense Ice Shelf Water (ISW) emerging from beneath the ice shelf cavities on the continental shelf, meets Modified Warm Deep Water (MWDW) originating from the Antarctic Circumpolar Current at the sill of the Filchner Trough. These hydrographic features convert the FOS into an oceanographic key region, which may also show enhanced biological productivity and corresponding aggregations of marine top predators. In this context, six adult Weddell seals (Leptonychotes weddellii) were instrumented with CTD-combined satellite relay data loggers in austral summer 2014. By means of these long-term data loggers we aimed at investigating the influence of environmental conditions on the seals’ foraging behaviour throughout seasons, focussing on the local oceanographic features. Weddell seals performed pelagic and demersal dives, mainly on the continental shelf, where they presumably exploited the abundant bentho-pelagic fish fauna. Diurnal and seasonal variations in light availability affected foraging activities. MWDW was associated with increased foraging effort. However, we observed differences in movements and habitat use between two different groups of Weddell seals. Seals tagged in the pack ice of the FOS focussed their foraging activities to the western and, partly, eastern flank of the Filchner Trough, which coincides with inflow pathways of MWDW. In contrast, Weddell seals tagged on the coastal fast ice exhibited typical central-place foraging and utilized resources close to their colony. High foraging effort in MWDW and high utilization of areas associated with an inflow of MWDW raise questions on the underlying biological features. This emphasizes the importance of further interdisciplinary ecological investigations in the near future, as the FOS may soon be impacted by predicted climatic changes.

Description: Thermokarst lakes in the Arctic and Subarctic release carbon from thawing permafrost in the form of methane and carbon dioxide with important implications for regional and global carbon cycles. Lake ice impedes the release of gas during the winter. For instance, bubbles released from lake sediments become trapped in downward growing lake ice, resulting in vertically-oriented bubble columns in the ice that are visible on the lake surface. We here describe a classification technique using an object-based image analysis (OBIA) framework to successfully map ebullition bubbles in airborne imagery of early winter ice on an interior Alaska thermokarst lake. Ebullition bubbles appear as white patches in high-resolution optical remote sensing images of snow-free lake ice acquired in early winter and, thus, can be mapped across whole lake areas. We used high-resolution (9–11 cm) aerial images acquired two and four days following freeze-up in the years 2011 and 2012, respectively. The design of multiresolution segmentation and region-specific classification rulesets allowed the identification of bubble features and separation from other confounding factors such as snow, submerged and floating vegetation, shadows, and open water. The OBIA technique had an accuracy of 〉95% for mapping ebullition bubble patches in early winter lake ice. Overall, we mapped 1195 and 1860 ebullition bubble patches in the 2011 and 2012 images, respectively. The percent surface area of lake ice covered with ebullition bubble patches for 2011 was 2.14% and for 2012 was 2.67%, representing a conservative whole lake estimate of bubble patches compared to ground surveys usually conducted on thicker ice 10 or more days after freeze-up. Our findings suggest that the information derived from high-resolution optical images of lake ice can supplement spatially limited field sampling methods to better estimate methane flux from individual lakes. The method can also be used to improve estimates of methane ebullition from numerous lakes within larger regions.

Description: The chapter presents a review of sea ice properties in relation to sub-seasonal to seasonal (S2S) predictions in the Arctic and the Antarctic. After a concise presentation of the main processes governing sea ice physics, the spatial distribution, seasonal cycle, and variability of sea ice in both poles are described. Using a variety of observations and model reconstructions of the four recent decades, the memory of the main descriptors of the sea ice state is quantified. In both the Arctic and the Antarctic, persistence of the sea ice areal properties emerges as the primarily source of sea ice sub-seasonal predictability, with strong dependence on season. Further memory can be obtained from reemergence mechanisms, implying processes internal to sea ice and coupling with the atmosphere and the ocean. In addition, lessons from modeling studies are addressed in terms of potential sea ice predictability and actual predictive skill. Finally, the chapter provides an overview of our understanding of the possible role of sea ice as a source of S2S atmospheric predictability, both in the polar regions and beyond.

Description: The present study is based on a series of two-dimensional simple shear numerical simulations of two-phase non-linear viscous materials used to investigate the mechanical behaviour of two-phase aggregates representing partially molten rocks. These simulations couple viscoplastic deformation with dynamic recrystallisation (DRX). The aim of these simulations is to investigate the competition between deformation and recrystallisation, and how they affect the mechanical behaviour and resulting microstructures of the deforming material. We systematically vary the melt to solid rock ratio, the dihedral angle of melt and the ratio of DRX vs. deformation. The results show that the amount of DRX and the dihedral angle have a first-order impact on the bulk rheology and the melt distribution in the aggregate. The numerical results allow defining two regimes, depending on the relative contribution of deformation and DRX: (1) a deformation-dominated regime at high strain rates (i.e., with a low ratio of recrystallisation vs. viscoplastic deformation) and (2) a recrystallisation-dominated regime at low strain rates (i.e., with a high ratio of recrystallisation vs. viscoplastic deformation). The first case results in systems bearing large connected melt pockets whose viscous flow controls the deformation of the aggregate, while disconnected smaller melt pockets develop in models where dynamic recrystallisation dominates. The results of this study allow us to better understand the development of connected melt pockets, which may focus melt flow. The distribution of the melt phase plays a key role in the formation of larger-scale melt-enriched shear bands, which in turn has a direct influence on large-scale convective mantle flow.

Description: Numerical models are important tools for understanding the processes and feedbacks in the Earth system, including those involving changes in atmospheric CO2 (CO2,atm) concentrations. Here, we compile 55 published model studies (consisting of 778 individual simulations) that assess the impact of six forcing mechanisms on millennial-scale CO2,atm variations: changes in freshwater supply to the North Atlantic and Southern Ocean, the strength and position of the southern-hemisphere westerlies, Antarctic sea ice extent, and aeolian dust fluxes. We generally find agreement on the direction of simulated CO2,atm change across simulations, but the amplitude of change is inconsistent, primarily due to the different complexities of the model representation of Earth system processes. When freshwater is added to the North Atlantic, a reduced Atlantic Meridional Overturning Circulation (AMOC) is generally accompanied by an increase in Southern Ocean- and Pacific overturning, reduced Antarctic sea ice extent, spatially varying export production, and changes in carbon storage in the Atlantic (rising), in other ocean basins (generally decreasing) and on land (more varied). Positive or negative CO2,atm changes are simulated during AMOC minima due to a spatially and temporally varying dominance of individual terrestrial and oceanic drivers (and compensating effects between them) across the different models. In contrast, AMOC recoveries are often accompanied by rising CO2,atm levels, which are mostly driven by ocean carbon release (albeit from different regions). The magnitude of simulated CO2,atm rise broadly scales with the duration of the AMOC perturbation (i.e., the stadial length). When freshwater is added to the Southern Ocean, reduced deep-ocean ventilation drives a CO2,atm drop via reduced carbon release from the Southern Ocean. Although the impacts of shifted southern-hemisphere westerlies are inconsistent across model simulations, their intensification raises CO2,atm via enhanced Southern Ocean Ekman pumping. Increased supply of aeolian dust to the ocean, and thus iron fertilisation of marine productivity, consistently lowers modelled CO2,atm concentrations via more efficient nutrient utilisation. The magni- tude of CO2,atm change in response to dust flux variations, however, largely depends on the complexity of models' marine ecosystem and iron cycle. This especially applies to simulations forced by Antarctic sea ice changes, in which the direction of simulated CO2,atm change varies greatly across model hierarchies. Our compilation highlights that no single (forcing) mechanism can explain observed past millennial-scale CO2,atm variability, and identifies important future needs in coupled carbon cycle-climate modelling to better understand the mechanisms governing CO2,atm changes in the past.

Description: © The Authors, 2019. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 4.0 International License. The definitive version was published in Marine Pollution Bulletin, 140, (2019):364-373, doi:10.1016/j.marpolbul.2018.12.047.

Description: Estuaries provide significant cultural ecosystem services, including recreation and tourism. Disruptions of estuarine biogeochemical processes resulting from environmental degradation could interrupt the flow of these services, reducing benefits and diminishing the welfare of local communities. This study focused on recreational shellfishing in Buzzards Bay, Massachusetts (41.55°N, 70.80°W). Relationships among measures of recreational shellfishing, estuarine water quality, and local socioeconomic conditions were tested to understand how the benefits of cultural ecosystem services to local communities might be affected by declining water quality. Transferring estimated economic benefits from an analysis of nearby municipalities, the study finds that increases in Chl a during the 24-year period were associated with losses in recreational shellfishing benefits of $0.08–0.67 million per decade. The approach presented here suggests a more broadly applicable framework for assessing the impacts of changes in coastal ecosystem water quality on the welfare of local communities.

Description: We would like to thank the Buzzards Bay Coalition, the Buzzards Bay National Estuary Program, and the Massachusetts Department of Marine Fisheries for providing data for this analysis. We thank the 1074 citizen volunteers of the Buzzards Bay Coalition who collected the water quality samples and Mark Rasmussen for his leadership in sustaining the Baywatchers Program. Support for this analysis was provided by the John D. and Catherine T. MacArthur Foundation (Grant no. 14-106159-000-CFP), MIT Sea Grant (subaward number 5710004045), the Johnson Endowment of the WHOI Marine Policy Center, and SCD acknowledges support from the University of Virginia.

Description: © The Authors, 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rogers, K. L., Bosman, S. H., Lardie-Gaylord, M., McNichol, A., Rosenheim, B. E., Montoya, J. P., & Chanton, J. P. (2019). Petrocarbon evolution: Ramped pyrolysis/oxidation and isotopic studies of contaminated oil sediments from the Deepwater Horizon oil spill in the Gulf of Mexico. PLoS One, 14(2), (2019):e0212433, doi:10.1371/journal.pone.0212433.

Description: Hydrocarbons released during the Deepwater Horizon (DWH) oil spill weathered due to exposure to oxygen, light, and microbes. During weathering, the hydrocarbons’ reactivity and lability was altered, but it remained identifiable as “petrocarbon” due to its retention of the distinctive isotope signatures (14C and 13C) of petroleum. Relative to the initial estimates of the quantity of oil-residue deposited in Gulf sediments based on 2010–2011 data, the overall coverage and quantity of the fossil carbon on the seafloor has been attenuated. To analyze recovery of oil contaminated deep-sea sediments in the northern Gulf of Mexico we tracked the carbon isotopic composition (13C and 14C, radiocarbon) of bulk sedimentary organic carbon through time at 4 sites. Using ramped pyrolysis/oxidation, we determined the thermochemical stability of sediment organic matter at 5 sites, two of these in time series. There were clear differences between crude oil (which decomposed at a lower temperature during ramped oxidation), natural hydrocarbon seep sediment (decomposing at a higher temperature; Δ14C = -912‰) and our control site (decomposing at a moderate temperature; Δ14C = -189‰), in both the stability (ability to withstand ramped temperatures in oxic conditions) and carbon isotope signatures. We observed recovery toward our control site bulk Δ14C composition at sites further from the wellhead in ~4 years, whereas sites in closer proximity had longer recovery times. The thermographs also indicated temporal changes in the composition of contaminated sediment, with shifts towards higher temperature CO2 evolution over time at a site near the wellhead, and loss of higher temperature CO2 peaks at a more distant site.

Description: This research was made possible by grants from The Gulf of Mexico Research Initiative through its consortiums: Ecosystem Impacts of Oil & Gas Inputs to the Gulf (ECOGIG), The Center for the Integrated Modeling and Analysis of the Gulf Ecosystem (C-Image), and Deep Sea to Coast Connectivity in the Eastern Gulf of Mexico (Deep-C) and the Resuspension, Redistribution and Deposition of DWH Recalcitrant Material (Re-Direct) project. This is ECOGIG Contribution # 521. Funding was also provided by the National Ocean Sciences Accelerator Mass Spectrometry Facility (NOSAMS) Graduate Student Internship Program (NSF OCE-1239667). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sathyendranath, S., Brewin, R. J. W., Brockmann, C., Brotas, V., Calton, B., Chuprin, A., Cipollini, P., Couto, A. B., Dingle, J., Doerffer, R., Donlon, C., Dowell, M., Farman, A., Grant, M., Groom, S., Horseman, A., Jackson, T., Krasemann, H., Lavender, S., Martinez-Vicente, V., Mazeran, C., Melin, F., Moore, T. S., Muller, D., Regner, P., Roy, S., Steele, C. J., Steinmetz, F., Swinton, J., Taberner, M., Thompson, A., Valente, A., Zuhlke, M., Brando, V. E., Feng, H., Feldman, G., Franz, B. A., Frouin, R., Gould, R. W., Hooker, S. B., Kahru, M., Kratzer, S., Mitchell, B. G., Muller-Karger, F. E., Sosik, H. M., Voss, K. J., Werdell, J., & Platt, T. An ocean-colour time series for use in climate studies: The experience of the ocean-colour climate change initiative (OC-CCI). Sensors, 19(19), (2019): 4285, doi: 10.3390/s19194285.

Description: Ocean colour is recognised as an Essential Climate Variable (ECV) by the Global Climate Observing System (GCOS); and spectrally-resolved water-leaving radiances (or remote-sensing reflectances) in the visible domain, and chlorophyll-a concentration are identified as required ECV products. Time series of the products at the global scale and at high spatial resolution, derived from ocean-colour data, are key to studying the dynamics of phytoplankton at seasonal and inter-annual scales; their role in marine biogeochemistry; the global carbon cycle; the modulation of how phytoplankton distribute solar-induced heat in the upper layers of the ocean; and the response of the marine ecosystem to climate variability and change. However, generating a long time series of these products from ocean-colour data is not a trivial task: algorithms that are best suited for climate studies have to be selected from a number that are available for atmospheric correction of the satellite signal and for retrieval of chlorophyll-a concentration; since satellites have a finite life span, data from multiple sensors have to be merged to create a single time series, and any uncorrected inter-sensor biases could introduce artefacts in the series, e.g., different sensors monitor radiances at different wavebands such that producing a consistent time series of reflectances is not straightforward. Another requirement is that the products have to be validated against in situ observations. Furthermore, the uncertainties in the products have to be quantified, ideally on a pixel-by-pixel basis, to facilitate applications and interpretations that are consistent with the quality of the data. This paper outlines an approach that was adopted for generating an ocean-colour time series for climate studies, using data from the MERIS (MEdium spectral Resolution Imaging Spectrometer) sensor of the European Space Agency; the SeaWiFS (Sea-viewing Wide-Field-of-view Sensor) and MODIS-Aqua (Moderate-resolution Imaging Spectroradiometer-Aqua) sensors from the National Aeronautics and Space Administration (USA); and VIIRS (Visible and Infrared Imaging Radiometer Suite) from the National Oceanic and Atmospheric Administration (USA). The time series now covers the period from late 1997 to end of 2018. To ensure that the products meet, as well as possible, the requirements of the user community, marine-ecosystem modellers, and remote-sensing scientists were consulted at the outset on their immediate and longer-term requirements as well as on their expectations of ocean-colour data for use in climate research. Taking the user requirements into account, a series of objective criteria were established, against which available algorithms for processing ocean-colour data were evaluated and ranked. The algorithms that performed best with respect to the climate user requirements were selected to process data from the satellite sensors. Remote-sensing reflectance data from MODIS-Aqua, MERIS, and VIIRS were band-shifted to match the wavebands of SeaWiFS. Overlapping data were used to correct for mean biases between sensors at every pixel. The remote-sensing reflectance data derived from the sensors were merged, and the selected in-water algorithm was applied to the merged data to generate maps of chlorophyll concentration, inherent optical properties at SeaWiFS wavelengths, and the diffuse attenuation coefficient at 490 nm. The merged products were validated against in situ observations. The uncertainties established on the basis of comparisons with in situ data were combined with an optical classification of the remote-sensing reflectance data using a fuzzy-logic approach, and were used to generate uncertainties (root mean square difference and bias) for each product at each pixel.

Description: This work was funded by the Ocean Colour Climate Change initiative of the European Space Agency (Grant Number 4000101437/10/I-LG). We acknowledge additional funding support by NERC through the National Centre for Earth Observation (Grant Number PR140015). Additional funding from a Simons Foundation Grant (549947, SS) is also gratefully acknowledged. V.B. also acknowledges funding from the European Union’s Horizon 2020 Research and Innovation Programme grant agreement N_ 810139: Project Portugal Twinning for Innovation and Excellence in Marine Science and Earth Observation – PORTWIMS.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 14(1), (2019):e0204193, doi: 10.1371/journal.pone.0204193.

Description: The resilience of regeneration in vertebrates is not very well understood. Yet understanding if tissues can regenerate after repeated insults, and identifying limitations, is important for elucidating the underlying mechanisms of tissue plasticity. This is particularly challenging in tissues, such as the nervous system, which possess a large number of terminally differentiated cells and often exhibit limited regeneration in the first place. However, unlike mammals, which exhibit very limited regeneration of spinal cord tissues, many non-mammalian vertebrates, including lampreys, bony fishes, amphibians, and reptiles, regenerate their spinal cords and functionally recover even after a complete spinal cord transection. It is well established that lampreys undergo full functional recovery of swimming behaviors after a single spinal cord transection, which is accompanied by tissue repair at the lesion site, as well as axon and synapse regeneration. Here we begin to explore the resilience of spinal cord regeneration in lampreys after a second spinal transection (re-transection). We report that by all functional and anatomical measures tested, lampreys regenerate after spinal re-transection just as robustly as after single transections. Recovery of swimming, synapse and cytoskeletal distributions, axon regeneration, and neuronal survival were nearly identical after spinal transection or re-transection. Only minor differences in tissue repair at the lesion site were observed in re-transected spinal cords. Thus, regenerative potential in the lamprey spinal cord is largely unaffected by spinal re-transection, indicating a greater persistent regenerative potential than exists in some other highly regenerative models. These findings establish a new path for uncovering pro-regenerative targets that could be deployed in non-regenerative conditions.

Description: The authors would like to thank Dr. Cristina Roman-Vendrell and Louie Kerr, Director of the Central Microscopy Facility at the MBL, for technical support. We also thank Dr. Juan Diaz-Quiroz for helpful comments on the manuscript. EG was supported in part by an NSF REU Award (#1659604: Biological Discovery in Woods Hole at the Marine Biological Laboratory).

Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Elsevier Ltd. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 244 (2019): 216-228, doi:10.1016/j.gca.2018.10.012.

Description: Mountain glaciers store dissolved organic carbon (DOC) that can be exported to river networks and subsequently respired to CO2. Despite this potential importance within the global carbon cycle, the seasonal variability and downstream transport of glacier-derived DOC in mountainous river basins remains largely unknown. To provide novel insight, here we present DOC concentrations and molecular-level dissolved organic matter (DOM) compositions from 22 nested, glaciated catchments (1.4 – 81.8 % glacier cover by area) in the Upper Ganges Basin, Western Himalaya over the course of the Indian summer monsoon (ISM) in 2014. Aliphatic and peptide-like compounds were abundant in glaciated headwaters but were overprinted by soil-derived phenolic, polyphenolic and condensed aromatic material as DOC concentrations increase moving downstream. Across the basin, DOC concentrations and soil-derived compound class contributions decreased sharply from pre- to post-ISM, implying increased relative contribution of glaciated headwater signals as the monsoon progresses. Incubation experiments further revealed a strong compositional control on the fraction of bioavailable DOC (BDOC), with glacier-derived DOC exhibiting the highest bioavailability. We hypothesize that short-term (i.e. in the coming decades) increases in glacier melt flux driven by climate change will further bias exported DOM toward an aliphatic-rich, bioavailable signal, especially during the ISM and post-ISM seasons. In contrast, eventual decreases in glacier melt flux due to mass loss will likely lead to more a soil-like DOM composition and lower bioavailability of exported DOC in the long term.

Description: We thank Britta Voss (WHOI) for assisting with sample collection; Travis Drake (FSU), and Ekaterina Bulygina (Woods Hole Research Center) for laboratory assistance; and the NHMFL ICR user program (NSF-DMR-1157490) for aiding in data acquisition and analysis. This study was partly supported by NSF-DEB-1145932 to R.G.M.S. J.D.H. was partially supported by the NSF Graduate Research Fellowship Program under grant number 2012126152, with additional support in the form of travel grants awarded by the MIT Houghten Fund and NHMFL. All data used in this study are available in the Supporting Information Tables S1 and S2.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fringer, O. B., Dawson, C. N., He, R., Ralston, D. K., & Zhang, Y. J. The future of coastal and estuarine modeling: findings from a workshop. Ocean Modelling, 143, (2019): 101458, doi:10.1016/j.ocemod.2019.101458.

Description: This paper summarizes the findings of a workshop convened in the United States in 2018 to discuss methods in coastal and estuarine modeling and to propose key areas of research and development needed to improve their accuracy and reliability. The focus of this paper is on physical processes, and we provide an overview of the current state-of-the-art based on presentations and discussions at the meeting, which revolved around the four primary themes of parameterizations, numerical methods, in-situ and remote-sensing measurements, and high-performance computing. A primary outcome of the workshop was agreement on the need to reduce subjectivity and improve reproducibility in modeling of physical processes in the coastal ocean. Reduction of subjectivity can be accomplished through development of standards for benchmarks, grid generation, and validation, and reproducibility can be improved through development of standards for input/output, coupling and model nesting, and reporting. Subjectivity can also be reduced through more engagement with the applied mathematics and computer science communities to develop methods for robust parameter estimation and uncertainty quantification. Such engagement could be encouraged through more collaboration between the forward and inverse modeling communities and integration of more applied math and computer science into oceanography curricula. Another outcome of the workshop was agreement on the need to develop high-resolution models that scale on advanced HPC systems to resolve, rather than parameterize, processes with horizontal scales that range between the depth and the internal Rossby deformation scale. Unsurprisingly, more research is needed on parameterizations of processes at scales smaller than the depth, including parameterizations for drag (including bottom roughness, bedforms, vegetation and corals), wave breaking, and air–sea interactions under strong wind conditions. Other topics that require significantly more work to better parameterize include nearshore wave modeling, sediment transport modeling, and morphodynamics. Finally, it was agreed that coastal models should be considered as key infrastructure needed to support research, just like laboratory facilities, field instrumentation, and research vessels. This will require a shift in the way proposals related to coastal ocean modeling are reviewed and funded.

Description: We thank Carmen Torres at Stanford University and Jennifer Warrillow at North Carolina State University for their assistance with workshop logistics. Helpful comments and suggestions were provided by two anonymous reviewers and Hans Burchard and John Warner. The workshop and preparation of this paper were funded by U.S. National Science Foundation Grant OCE-1749613.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gruen, D. S., Wolfe, J. M., & Fournier, G. P.. Paleozoic diversification of terrestrial chitin-degrading bacterial lineages. BMC Evolutionary Biology, 19, (2019): 34, doi:10.1186/s12862-019-1357-8.

Description: Background Establishing the divergence times of groups of organisms is a major goal of evolutionary biology. This is especially challenging for microbial lineages due to the near-absence of preserved physical evidence (diagnostic body fossils or geochemical biomarkers). Horizontal gene transfer (HGT) can serve as a temporal scaffold between microbial groups and other fossil-calibrated clades, potentially improving these estimates. Specifically, HGT to or from organisms with fossil-calibrated age estimates can propagate these constraints to additional groups that lack fossils. While HGT is common between lineages, only a small subset of HGT events are potentially informative for dating microbial groups. Results Constrained by published fossil-calibrated studies of fungal evolution, molecular clock analyses show that multiple clades of Bacteria likely acquired chitinase homologs via HGT during the very late Neoproterozoic into the early Paleozoic. These results also show that, following these HGT events, recipient terrestrial bacterial clades likely diversified ~ 300–500 million years ago, consistent with established timescales of arthropod and plant terrestrialization. Conclusions We conclude that these age estimates are broadly consistent with the dispersal of chitinase genes throughout the microbial world in direct response to the evolution and ecological expansion of detrital-chitin producing groups. The convergence of multiple lines of evidence demonstrates the utility of HGT-based dating methods in microbial evolution. The pattern of inheritance of chitinase genes in multiple terrestrial bacterial lineages via HGT processes suggests that these genes, and possibly other genes encoding substrate-specific enzymes, can serve as a “standard candle” for dating microbial lineages across the Tree of Life.

Description: This work was supported by a National Science Foundation (NSF) Graduate Research Fellowship Program Award to DSG., and Simons Collaboration on the Origins of Life Award #339603 and NSF Integrated Earth Systems Program Award #1615426 to GPF. The funding agencies for this study had no role in study design, data collection, data analysis and interpretation, or in writing the manuscript.

Description: Seismological findings show a complex scenario of plume upwellings from a deep thermo-chemical anomaly (superplume) beneath the East African Rift System (EARS). It is unclear if these geophysical observations represent a true picture of the superplume and its influence on magmatism along the EARS. Thus, it is essential to find a geochemical tracer to establish where upwellings are connected to the deep-seated thermo-chemical anomaly. Here we identify a unique non-volatile superplume isotopic signature (‘C’) in the youngest (after 10 Ma) phase of widespread EARS rift-related magmatism where it extends into the Indian Ocean and the Red Sea. This is the first sound evidence that the superplume influences the EARS far from the low seismic velocities in the magma-rich northern half. Our finding shows for the first time that superplume mantle exists beneath the rift the length of Africa from the Red Sea to the Indian Ocean offshore southern Mozambique

Description: Localisation of ductile deformation in rocks is commonly found at all scales from crustal shear zones down to grain scale shear bands. Of the various mechanisms for localisation, mechanical anisotropy has received relatively little attention, especially in numerical modelling. Mechanical anisotropy can be due to dislocation creep of minerals (e.g. ice or mica) and/or layering in rocks (e.g. bedding, cleavage). We simulated simple-shear deformation of a locally anisotropic, single-phase power-law rheology material up to shear strain of five. Localisation of shear rate in narrow shear bands occurs, depending on the magnitude of anisotropy and the stress exponent. At high anisotropy values, strain-rate frequency distributions become approximately log-normal with heavy, exponential tails. Localisation due to anisotropy is scale-independent and thus provides a single mechanism for a self-organised hierarchy of shear bands and zones from mm-to km-scales. The numerical simulations are compared with the natural example of the Northern Shear Belt at Cap de Creus, NE Spain.

Description: The concept of multi-use of the sea has gained popularity in recent years as a result of ocean space (coastal areas and regions with relatively small sea space in particular) becoming increasingly crowded due to the development of the maritime economy. Competing claims for space can be a source of conflict, however this may also lead to mutual benefits for different users when sustainable combinations are sought. Despite increasing European-wide efforts, on-the-ground knowledge and practice of multi-use are still limited. Therefore, with the aim of investigating opportunities for multi-use development in the European seas, 10 case studies were selected, involving different site-specific contexts. This study analyses the characteristics and development potential for ocean multi-use, integrating results from desk analysis and stakeholder perceptions from different sectors in each of the case study locations. Similarities and differences between various combinations of sea uses are also identified. The results show a high heterogeneity of multi-use opportunities between case studies, with a range of combinations identified. The investigated combinations of maritime uses share an overall balance between factors promoting (drivers) and hindering (barriers) multi-use development. Based on stakeholder opinions, expected benefits (added values) of multi-use implementation outweigh potential negative impacts. Management actions are also proposed to further exploit multi-use potential at a local, regional (sub-national) and national levels.

Description: The heat imbalance is the fundamental driver for the atmospheric circulation. Therefore, it is crucially important to understand how it responds to global warming. In this study, the role of the ocean in reshaping the atmospheric meridional heat imbalance is explored based on observations and climate simulations. We found that ocean tends to strengthen the meridional heat imbalance over the mid-latitudes. This is primarily because of the uneven ocean heat uptake between the subtropical and subpolar oceans. Under global warming, the subtropical ocean absorbs relatively less heat as the water there is well stratified. In contrast, the subpolar ocean is the primary region where the ocean heat uptake takes place, because the subpolar ocean is dominated by upwelling, strong mixing, and overturning circulation. We propose that the enhanced meridional heat imbalance may potentially contribute to strengthening the water cycle, westerlies, jet stream, and mid-latitude storms.

Description: © The Authors, 2019. This article is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 4.0 International License. The definitive version was published in Molecular Phylogenetics and Evolution (2019), doi:10.1016/j.ympev.2019.02.003.

Description: The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent common ancestor among con-specific samples collected in the same region has been viewed as evidence for subspecies. Several recent studies in cetaceans have employed this criterion to suggest subsequent intraspecific taxonomic revisions. We reason that employing intra-specific, spatially distinct monophyly at non-recombining, clonally inherited genomes is an unsatisfactory criterion for defining subspecies based upon theoretical (genetic drift) and practical (sampling effort) arguments. This point was illustrated by a re-analysis of a global mitogenomic assessment of fin whales, Balaenoptera physalus spp., published by Archer et al. (2013), which proposed to further subdivide the Northern Hemisphere fin whale subspecies, B. p. physalus. The proposed revision was based upon the detection of spatially distinct monophyly among North Atlantic and North Pacific fin whales in a genealogy based upon complete mitochondrial genome DNA sequences. The extended analysis conducted in this study (1,676 mitochondrial control region, 162 complete mitochondrial genome DNA sequences and 20 microsatellite loci genotyped in 358 samples) revealed that the apparent monophyly among North Atlantic fin whales reported by Archer et al. (2013) to be due to low sample sizes. In conclusion, defining sub-species from monophyly (i.e., the absence of para- or polyphyly) can lead to erroneous conclusions due to relatively “trivial” aspects, such as sampling. Basic population genetic processes (i.e., genetic drift and migration) also affect the time to the most recent common ancestor and hence the probability that individuals in a sample are monophyletic.

Description: We are grateful to Hanne Jørgensen, Anna Sellas, Mary Beth Rew and Christina Færch-Jensen for technical assistance. We thank Drs. P. E. Rosel and K. D. Mullin (U.S. National Marine Fisheries Service Southeast Fisheries Science Center) and members of the U.S. Northeast and Southeast Region Marine Mammal Stranding Network and its response teams, including the International Fund for Animal Welfare, the Marine Mammal Stranding Center, Mystic Aquarium, the Riverhead Foundation for Marine Research and Preservation (K. Durham) and the Marine Mammal Stranding Program of the University of North Carolina Wilmington for access to fin whale samples from the western North Atlantic. We thank Gisli Vikingsson for providing samples. We are indebted to Dr. Eduardo Secchi for facilitating data sharing. Data collection in the Southern Ocean was conducted under research projects Baleias (CNPq grants 557064/2009-0 and 408096/2013-6), INTERBIOTA (CNPq 407889/2013-2) and INCT-APA (CNPq 574018/2008-5), of the Brazilian Antarctic Program and a contribution by the research consortium ‘Ecology and Conservation of Marine Megafauna – EcoMega-CNPq’. MAS was supported through a FCT Investigator contract funded by POPH, QREN European Social Fund, and Portuguese Ministry for Science and Education. Data collection in the Azores was funded by TRACE-PTDC/MAR/74071/2006 and MAPCET-M2.1.2/F/012/2011 [FEDER, COMPETE, QREN European Social Fund, and Proconvergencia Açores/EU Program]. Fin whale illustration herein is used with the permission of Frédérique Lucas. We acknowledge the Center for Information Technology of the University of Groningen for IT support and access to the Peregrine high performance-computing cluster.

Description: The reconstruction of past environments by means of macrofossil and pollen analysis is commonly based on the modern ecological preferences of the taxa that may have produced these fossils. Here we present a modelling approach, in which we use modern vegetation–surface height relationships to quantify past surface heights in an Arctic ice-wedge polygon mire. Vegetation composition and ground surface height (GSH) were assessed in a polygon mire near Kytalyk (Northeastern Siberia). Cluster analysis revealed five plant communities, which are clearly separated with respect to ground surface height, frost surface height and coverages of open water and vegetation. Based on the composition of modern vegetation we constructed two sets of potential fossil types (plant macrofossils and pollen), an extensive one and a more restricted one to reflect different conditions of preservation and recognisability. We applied Canonical Correspondence Analysis to model the relationships between potential fossil types and measured GSH. Both models show a strong relationship between modelled and measured GSH values and a high accuracy in prediction. Finally, we used the models to predict GSH values for Holocene peat samples and found a fair correspondence with expert-based multi-proxy reconstruction of wetness conditions, even though only a minor part of the encountered fossils were represented in the GSH models, illustrating the robustness of the approach. Our approach can be used to reconstruct palaeoenvironmental conditions in a more objective way and can serve as a template for further palaeoecological studies.

Description: The Punta delle Pietre Nere (Gargano, Southern Italy) igneous body is constituted by gabbroic and syenitic rocks with lamprophyric affinity of different age (58 and 62 Ma, respectively). The chemical composition of the minerals clearly indicates that there is no genetic relationship between the two lithotypes, in agreement with their significant age difference. The chemical (trace elements) and Sr-Nd-Pb-isotopic composition of these rocks highlights an “anorogenic” geochemical affinity derived from mixed DMM-HIMU-EM mantle reservoirs, similarly to other Paleogene-Oligocenemagmatic provinces in the Circum-Mediterranean Area. In past literature, these features were interpreted as evidences for enriched asthenospheric mantle plume upwelling from deep regions beneath the Western Europe. Here we suggest that the HIMU-like composition of Punta delle Pietre Nere rocks is related to a lithosphericmantle source bearing amphibole-rich veins, resulting from crystallization of melts within the amphibole stability field in presence of H2O, as shown by several experimental works. Our results suggests partial melting at 70–90 km depth, which corresponds to the spinel-garnet transition (2.5–3.5 GPa) close to the amphibole stability limit (~90–110 km and 2.5–3.5 GPa).

Description: Published

Description: 316-328

Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici

Description: JCR Journal

Description: The Arctic is directly impacted by climate change. The increase in air temperature drives the thawing of permafrost and an increase in coastal erosion and river discharge. This leads to a greater input of sediment and organic matter into coastal waters, which substantially impacts the ecosystems, the subsistence economy of the local population, and the climate because of the transformation of organic matter into greenhouse gases. Yet, the patterns of sediment dispersal in the nearshore zone are not well known, because ships do not often reach shallow waters and satellite remote sensing is traditionally focused on less dynamic environments. The goal of this study is to use the extensive Landsat archive to investigate sediment dispersal patterns specifically on an exemplary Arctic nearshore environment, where field measurements are often scarce. Multiple Landsat scenes were combined to calculate means of sediment dispersal and sea surface temperature under changing seasonal wind conditions in the nearshore zone of Herschel Island Qikiqtaruk in the western Canadian Arctic since 1982. We use observations in the Landsat red and thermal wavebands, as well as a recently published water turbidity algorithm to relate archive wind data to turbidity and sea surface temperature. We map the spatial patterns of turbidity and water temperature at high spatial resolution in order to resolve transport pathways of water and sediment at the water surface. Our results show that these pathways are clearly related to the prevailing wind conditions, being ESE and NW. During easterly wind conditions, both turbidity and water temperature are significantly higher in the nearshore area. The extent of the Mackenzie River plume and coastal erosion are the main explanatory variables for sediment dispersal and sea surface temperature distributions in the study area. During northwesterly wind conditions, the influence of the Mackenzie River plume is negligible. Our results highlight the potential of high spatial resolution Landsat imagery to detect small-scale hydrodynamic processes, but also show the need to specifically tune optical models for Arctic nearshore environments.

Description: Differentiating thermokarst basin sediments with respect to the involved processes and environmental conditions is an important tool to understand permafrost landscape dynamics and scenarios and future trajectories in a warming Arctic and Subarctic. Thermokarst basin deposits have complex sedimentary structures due to the variability of Yedoma source sediments, reworking during the Late Glacial to Holocene climate changes, and different stages of thermokarst history. Here we reconstruct the dynamic growth of thermokarst lakes and basins and related changes of depositional conditions preserved in sediment sequences using a combination of biogeochemical data and robust grain-size endmember analysis (rEMMA). This multi-proxy approach is used on 10 sediment cores (each 300–400 cm deep) from two key thermokarst sites to distinguish four time slices that describe the Holocene thermokarst (lake) basin evolution in Central Yakutia (CY). Biogeochemical proxies and rEMMA reveal fine-grained sedimentation with rather high lake levels and/or reducing conditions, and coarse-grained sedimentation with rather shallow lake levels and/or oxidizing (i.e. terrestrial) conditions in relation to distal and proximal depositional and post-sedimentary conditions. Statistical analysis suggests that the biogeochemical parameters are almost independent of thermokarst deposit sedimentology. Thus, the biogeochemical parameters are considered as signals of secondary (post-sedimentary) reworking. The rEMMA results are clearly reflecting grain-size variations and depositional conditions. This indicates small-scale varying depositional environments, frequently changing lake levels, and predominantly lateral expansion at the edges of rapidly growing small thermokarst lakes and basins. These small bodies finally coalesced, forming the large thermokarst basins we see today in CY. Considering previous paleoenvironmental reconstructions in Siberia, we show the initiation of thaw and subsidence during the Late Glacial to Holocene transition between about 11 and 9 cal kyrs BP, intensive and extensive thermokarst activity for the Holocene Thermal Maximum (HTM) at about 7 to 5 cal kyrs BP, severely fluctuating water levels and further lateral basin growth between 3.5 cal kyrs BP and 1.5 cal kyrs BP, and the cessation of thermokarst activity and extensive frost-induced processes (i.e. permafrost aggradation) after about 1.5 cal kyrs BP. However, gradual permafrost warming over recent decades, in addition to human impacts, has led to renewed high rates of subsidence and abrupt, rapid CY thermokarst processes.

Description: Time-variable gravity measurements from the Gravity Recovery and Climate Experiment (GRACE) and GRACE-Follow On (GRACE-FO) missions and satellite altimetry measurements from CryoSat-2 enable independent mass balance estimates of the Earth’s glaciers and ice sheets. Both approaches vary in terms of their retrieval principles and signal-to-noise characteristics. GRACE/GRACE-FO recovers the gravity disturbance caused by changes in the mass of the entire ice sheet with a spatial resolution of 300 to 400 km. In contrast, CryoSat-2measures travel times of a radar signal reflected close to the ice sheet surface, allowing changes of the surface topography to be determined with about 5 km spatial resolution. Here, we present a method to combine observations from the both sensors, taking into account the different signal and noise characteristics of each satellite observation that are dependent on the spatial wavelength. We include uncertainties introduced by the processing and corrections, such as the choice of the re-tracking algorithm and the snow/ice volume density model for CryoSat-2, or the filtering of correlated errors and the correction for glacial-isostatic adjustment (GIA) for GRACE. We apply our method to the Antarctic ice sheet and the time period 2011–2017, in which GRACE and CryoSat-2 were simultaneously operational, obtaining a total ice mass loss of 178 ± 23 Gt yr−1. We present a map of the rate of mass change with a spatial resolution of 40 km that is evaluable across all spatial scales, and more precise than estimates based on a single satellite mission.

Description: This work focuses on the study of land subsidence processes by means of multi-temporal and multi-frequency InSAR techniques. Specifically, we retrieve the long-term evolution (2003–2018) of the creeping phenomenon producing ground fissuring in the Ciudad Guzmán (Jalisco state, Mexico) urban area. The city is located on the northern side of the Volcan de Colima area, one of the most active Mexican volcanoes. On September 21 2012, Ciudad Guzmán was struck by ground fissures of about 1.5 km of length, causing the deformation of the roads and the propagation of fissures in adjacent buildings. The field surveys showed that fissures follow the escarpments produced during the central Mexico September 19 1985 Mw 8.1 earthquake. We extended the SAR (Synthetic Aperture Radar) interferometric monitoring starting with the multi-temporal analysis of ENVISAT and COSMO-SkyMed datasets, allowing the monitoring of the observed subsidence phenomena a ecting the Mexican city. We processed a new stack of Sentinel-1 TOPSAR acquisition mode images along both descending and ascending paths and spanning the 2016–2018 temporal period. The resulting long-term trend observed by satellites, together with data from volcanic bulletin and in situ surveys, seems to suggest that the subsidence is due to the exploitation of the aquifers and that the spatial arrangement of ground deformation is controlled by the position of buried faults.

Description: Published

Description: id 2246

Description: 2T. Deformazione crostale attiva

Description: JCR Journal

Description: Here we provide two ArcGIS map packages with georeferenced files on the spatial distribution of sponges and echinoderms in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area (MPA) in the Weddell Sea. Sponges: The map of interpolated occurrence of sponges is based on quantitative abundance data (Gerdes 2014 a - o) and on semi-quantitative data obtained by W. Arntz (retired; formerly AWI) (see Teschke & Brey 2019a for presence / absence records of the latter dataset). The abundance data were classified to be merged with the semi-quantitative data and an inverse distance weighted method was performed on the united dataset. Areas with very common occurrence of sponges occurred on the shelf near Brunt Ice Shelf along Riiser - Larsen Ice Shelf to Ekstrøm Ice Shelf. Echinoderms: A cluster analysis with species x station datasets of asteroids (Teschke & Brey 2019b), ophiuroids (Teschke & Brey 2019c) and holothurians (Gutt et al. 2014) from the Antarctic Weddell Sea indicated a particular cold-water echinoderm fauna on the Filchner shelf. We approximated this potential habitat by bottom temperature ≤ -1°, based on seawater temperature data from the Finite Element Sea Ice - Ocean Model provided by R. Timmermann (AWI). More information on the spatial analysis is given in working paper WG-EMM-16/03 submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (available at https://www.ccamlr.org/en/wg-emm-16).

Description: Here we provide four ArcGIS map packages with georeferenced files on the spatial distribution of demersal and pelagic fishes in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area (MPA) in the Weddell Sea. Antarctic toothfish: The map of Dissostichus mawsoni occurrence probability is based on catch per unit effort (CPUE) data from the database of the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) (data request: 03-08-2016) and on bathymetric data from the International Bathymetric Chart of the Southern Ocean (IBCSO). We fitted a four-parameter Weibull model to the simulated CPUE data per depth interval by means of the R package \textquotesinglefitdistrplus\textquotesingle. The highest D. mawsoni occurrence probability was shown at depths between 1500 and 2000 m and only approximately 20 % of the Antarctic toothfish population occurred deeper than 2000 m. Antarctic silverfish: The map of interpolated abundances of Pleuragramma antarctica was based on pelagic trawl survey data, which were collected during "Polarstern" cruises ANT-I/2, ANT-III/3 and in the context of the Lazarev Sea Krill Survey (LAKRIS) ("Polarstern" cruises ANT-XXI/4, ANT-XXIII/6, ANT-XXIV/2). The first mentioned data were provided by V. Siegel (retired; formerly Th\"unen Institute), the LAKRIS data by H. Flores (AWI). Those data were complemented by benthic trawl survey data, which were collected during seven "Polarstern" cruises between 1996 and 2011 (ANT-XIII/3, ANT-XV/3, ANT-XVII/3, ANT-XIX/5, ANT-XXI/2, ANT-XXIII/8, ANT-XXVII/3) and were provided by R. Knust (AWI) as well as by data on counts of fish species from trawl and dredge samples by Drescher et. (2012), Ekau et al. (2012a, b), Hureau et al. (2012), Kock et al. (2012) and W\"ohrmann et al. (2012). An inverse distance weighted interpolation was performed for a 10 nautical mile radius around each record. Areas with highest numbers of P. antarctica (〉 36 individuals/1000 m²) occurred offshore Riiser -Larsen Ice Shelf and on the southern Weddell Sea continental shelf offshore Filchner Ice Shelf. Demersal fish: The map of predicted habitat suitability for demersal fish is based on data, which were collected during seven "Polarstern" cruises between 1996 and 2011 (ANT-XIII/3, ANT-XV/3, ANT-XVII/3, ANT-XIX/5, ANT-XXI/2, ANT-XXIII/8, ANT-XXVII/3) and were provided by R. Knust (AWI). The habitat suitability model was developed by the use of the modelling package "biomod2". Most suitable habitat conditions for demersal fish in the wider Weddell Sea occurred on the continental shelf between approx. 5° and 30°W, on the shelf west and east of the tip of the Antarctic Peninsula as well as around the South Shetland and South Orkney Islands. Nesting sites of demersal fish: The map on observation of nesting sites of demersal fish is based on data, which were collected during "Polarstern" cruises ANT-XXVII/3, ANT-XXIX/9 and ANT-XXXI/2 and were obtained by T. Lund\"alv (retired; formerly University of Gothenburg), D. Gerdes (retired; formerly AWI) and E. Riginella (University of Padova), respectively. Those data were complemented by a literature research. Most nesting sites were observed west of 25°W, north of the tip of the Antarctic Peninsula and along the west coast of the Antarctic Peninsula. More information is given in the working paper WG-EMM-16/03 submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management CCAMLR (available at https://www.ccamlr.org/en/wg-emm-16). Revised versions of the spatial analysis are described in working paper WG-SAM-17/30 and WS-SM-18/13 submitted to the CCAMLR Working Group on Statistics, Assessments and Modelling and the CCAMLR Workshop on Spatial Management, respectively (available at https://www.ccamlr.org/en/wg-sam-17; https://www.ccamlr.org/en/ws-sm-1

Description: Here, we provided four ArcGIS map packages with georeferenced files on the spatial distribution of Antarctic krill, Euphausia superba, (adults and larvae) and ice krill, Euphausia crystallorophias, in the wider Weddell Sea. The files were created in the context of the development of a marine protected area in the Weddell Sea. Antarctic krill (adults): The map of predicted habitat suitability for adult Antarctic krill was based on krill data from the database KRILLBASE (Atkinson et al., 2017; data request: 26-09-13). Those data were complemented by krill data, which were collected (a) during the Norwegian Antarctic research expedition 1976/77 (M/V "Polarsirkel"), (b) during two Soviet research cruises (RV "Gizhiga", 1977; RV "Volny Vetter", 1983), (c) in the context of the Lazarev Sea Krill Survey ("Polarstern" cruises ANT-XXI/4, ANT-XXIII/2, ANT-XXIII/6, ANT-XXIV/2) as well as (d) during "Polarstern" cruise ANT-XXIX/3. The habitat suitability model was developed by the use of the modelling package "biomod2". As predictor variables, we used (i) dissolved oxygen from the World Ocean Atlas 2013, (ii) ice coverage from AMSR-E sea ice maps, (iii) seawater temperature data from the Finite Element Sea Ice - Ocean Model (FESOM) provided by R. Timmermann (AWI), (iv) bathymetric data from the International Bathymetric Chart of the Southern Ocean (IBCSO) and (v) SeaWiFS chlorophyll-a concentration data. Most suitable habitat conditions for the Antarctic krill seem to occur near the tip of the Antarctic Peninsula, on the continental slope between 15°W and 15°E and on the Maud Rise plateau. Antarctic krill (larvae): The map of interpolated abundances of krill larvae is based on abundance data, which were collected (a) during the Norwegian Antarctic research expeditions 1976/77, 1977/78 and 1979/80 (M/V "Polarsirkel"), (b) in the context of the First International BIOMASS Experiment survey (FIBEX) (Walther Herwig cruise 1981) and the Lazarev Sea Krill Survey (LAKRIS) ("Polarstern" cruises ANT-XXI/4, ANT-XXIII/6) as well as (c) during "Polarstern" cruise ANT-VII/4 and the combined "Polarstern" (ANT-VIII/2) and R.V. "Akademik Fedorova" cruise. An inverse distance weighted (IDW) interpolation was performed for a 30 km radius around each krill larvae record. Areas with highest numbers of E. superba larvae (〉 1000 individuals/m²) occurred west of the Prime Meridian from approximately 65°S to the ice shelf. Ice krill (adults): The map of the potential habitat of E. crystallorophias was approximated by water depth from 0 m to 550 m, using bathymetric data from IBCSO, and mean sea surface temperature ≤ 0°C based on temperature data from FESOM provided by R. Timmermann (AWI). The map of interpolated density of individuals of E. crystallorophias is based on abundance data, which were collected (a) during the Norwegian Antarctic research expedition 1979/80 (M/V "Polarsirkel"), (b) during the German Antarctic research cruise 1975/76 with "Walther Herwig", (c) in the context of the Lazarev Sea Krill Survey ("Polarstern" cruises ANT-XXI/4, ANT-XXIII/2, ANT-XXIII/6, ANT-XXIV/2) as well as (d) during "Polarstern" cruise ANT-V/1-3, ANT-VII/4 and ANT-XXIX/3. An IDW interpolation was performed for a 30 km radius around each record of ice krill. Areas with highest densities of E. crystallorophias individuals occurred on the south-eastern Weddell Sea shelf and near the tip of the Antarctic Peninsula. Volker Siegel (retired; formerly Th\"unen Institute) provided the data for the Antarctic krill and ice krill. More information on the spatial analysis is given in working paper WG-EMM-16/03 submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (available at https://www.ccamlr.org/en/wg-emm-16)

Description: Here we provide four ArcGIS map packages with georeferenced files on the spatial distribution of Antarctic petrels, Ad\'elie penguins (breeders and non-breeders) and Emperor penguins in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area in the Weddell Sea. Antarctic petrel (Thalassoica antarctica): We approximated potential foraging habitats of T. antarctica according to existing literature by ice coverage from AMSR-E sea ice maps, bathymetric data from the International Bathymetric Chart of the Southern Ocean (IBCSO), and seawater temperature data from the Finite Element Sea Ice - Ocean Model (FESOM) provided by R. Timmermann (AWI). Subsequently, we combined our Antarctic petrel model with the kernel utilization distribution model from Descamps et al. (2016). The authors kindly provided us with shape files showing the kernel utilization summer and winter distribution of Antarctic petrel breeding at Svarthamaren. Breeding locations and estimated number of breeding pairs were taken from van Franeker et al. (1999). Favourable habitat conditions for Antarctic petrels were predicted for the Lazarev Sea and along the eastern coast of the Weddell Sea, particularly for the area off the Fimbul Ice Shelf and along the coast between approx. 15°E to 10°W within a water depth range from approx. 500 m to 2500 m. Breeding Ad\'elie penguins (Pygoscelis adeliae): The map of potential foraging habitats of breeding P. adeliae is based on British Antarctic Survey (BAS) Inventory data from Phil Trathan (ID 754) and Mike Dunn and P. Trathan (ID 764, 773, 779), a dataset from BAS (P. Trathan) and Instituto Ant\'artico Argentino (Mercedes Santos) (ID 753) and a dataset from the US AMLR Program from Jefferson Hinke and Wayne Trivelpiece (NOAA) (ID 910), which are stored in the Birdlife International\textquotesingles Seabird Tracking Database (data request: 20-10-2015). Suitable foraging habitats for breeding Ad\'elies from colonies from which no tracking data were not available were approximated by a 50 km buffer and a 50-100 km ring buffer around each colony according to the recommendations of a CCAMLR MPA planning workshop. Breeding locations and estimated abundance of breeding pairs were taken from Lynch and LaRue (2014). The tracking data were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). Jefferson Hinke (NOAA) kindly provided us with support running the R script. Highly suitable foraging habitats occurred about 50 km away from the colonies on King Georg Island, the colony in Hope Bay (Graham Land) and the colonies on the South Orkney Islands. Non-breeding Ad\'elie penguins (Pygoscelis adeliae): The map of potential foraging habitats of non-breeding P. adeliae is based on British Antarctic Survey (BAS) Inventory data from Phil Trathan (ID 754) and Mike Dunn and P. Trathan (ID 773, 779), a dataset from BAS (P. Trathan) and Instituto Ant\'artico Argentino (Mercedes Santos) (ID 753) and a dataset from the US AMLR Program from Jefferson Hinke and Wayne Trivelpiece (NOAA) (ID 910), which are stored in the Birdlife International\textquotesingles Seabird Tracking Database (data request: 20-10-2015). The tracking data were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). Jefferson Hinke (NOAA) kindly provided us with support running the R script. Highest habitat utilisation was concentrated in relative small areas (e.g., close to King Georg Island). However, the non-breeding Ad\'elies seemed to roam through large parts of the Weddell Sea. Emperor penguins (Aptenodytes forsteri): The probability map of A. forsteri occurrence was developed as a function of distance to colony and colony size from Fretwell et al. (2012, 2014) as well as from sea ice concentration from AMSR-E sea ice maps. Our model of emperor penguin foraging distribution during breeding season showed that the probability of occurrence is highest at the Halley and Dawson colony near Brunt Ice Shelf and at the Atka colony near Ekstrøm Ice Shelf. More information on the spatial analysis is given in working paper WG-EMM-16/03 and WG-SAM-17/30 (for T. antarctica) submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (EMM) and the CCAMLR Working Group on Statistics, Assessments and Modelling (SAM), respectively (available at https://www.ccamlr.org/en/wg-emm-16 and https://www.ccamlr.org/en/wg-s

Description: Here we provide two ArcGIS map packages with georeferenced files on the spatial distribution of seals in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area in the Weddell Sea. Spatial distribution of seals based on aerial surveys: The map of the spatial distribution of crabeater seals is based on modelled seal abundances from Flores et al. (2008) and Forcada et al. (2012). These modelled abundances were supplemented by abundance data derived from Bester et al. (1995, 2002) and by point data from Pl\"otz et al. (2011a-e), which were translated into abundance values by the count method for line transect data. The calculated data on seal abundances from Pl\"otz et al. (2011a-e) and Bester et al. (1995, 2002) were interpolated using the inverse distance weighted method. The combined data set of modelled and interpolated abundances showed highest absolute seal abundances offshore the Riiser-Larsen Ice Shelf and Quarisen Ice Shelf. Spatial distribution of seals based on tracking data: The map of probability of seal occurrence is based on all tracking data publicly available for the wider Weddell Sea from the MEOP data portal "Marine Mammals Exploring the Oceans Pole to Pole" (data request: 14-11-2016). In addition, we have used MEOP data (UK data: ct27, ct70; German data: ct113, wd06, wd07) for which unconditional sharing is not yet accepted. These data were provided by Lars Boehme (University of St. Andrews) and Horst Bornemann (AWI), respectively. Furthermore, the data from the MEOP data portal were complemented by tracking data sets on southern elephant seals (Tosh et al. 2009, James et al. 2012), Weddell seals (McIntyre et al. 2013) and crabeater seals (Nachtsheim et al. 2016). All tracking data united were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). The tracking data analysis indicated frequent occurrence of seals in a larger area off the Brunt and Filchner Ice Shelf (approx. 25°W-40°W), and in smaller patches along the eastern Weddell Sea ice shelfs as well as in the region around the tip of the Antarctic Peninsula. More information on the spatial analysis is given in working paper WG-EMM-16/03 and WG-SAM-17/30 submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (EMM) and the CCAMLR Working Group on Statistics, Assessments and Modelling (SAM), respectively (available at https://www.ccamlr.org/en/wg-emm-16 and https://www.ccamlr.org/en/wg-sam-17

Description: Here we provide four ArcGIS map packages with georeferenced files on the spatial distribution of Antarctic petrels, Ad\'elie penguins (breeders and non-breeders) and Emperor penguins in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area in the Weddell Sea. Antarctic petrel (Thalassoica antarctica): We approximated potential foraging habitats of T. antarctica according to existing literature by ice coverage from AMSR-E sea ice maps, bathymetric data from the International Bathymetric Chart of the Southern Ocean (IBCSO), and seawater temperature data from the Finite Element Sea Ice - Ocean Model (FESOM) provided by R. Timmermann (AWI). Subsequently, we combined our Antarctic petrel model with the kernel utilization distribution model from Descamps et al. (2016). The authors kindly provided us with shape files showing the kernel utilization summer and winter distribution of Antarctic petrel breeding at Svarthamaren. Breeding locations and estimated number of breeding pairs were taken from van Franeker et al. (1999). Favourable habitat conditions for Antarctic petrels were predicted for the Lazarev Sea and along the eastern coast of the Weddell Sea, particularly for the area off the Fimbul Ice Shelf and along the coast between approx. 15°E to 10°W within a water depth range from approx. 500 m to 2500 m. Breeding Ad\'elie penguins (Pygoscelis adeliae): The map of potential foraging habitats of breeding P. adeliae is based on British Antarctic Survey (BAS) Inventory data from Phil Trathan (ID 754) and Mike Dunn and P. Trathan (ID 764, 773, 779), a dataset from BAS (P. Trathan) and Instituto Ant\'artico Argentino (Mercedes Santos) (ID 753) and a dataset from the US AMLR Program from Jefferson Hinke and Wayne Trivelpiece (NOAA) (ID 910), which are stored in the Birdlife International\textquotesingles Seabird Tracking Database (data request: 20-10-2015). Suitable foraging habitats for breeding Ad\'elies from colonies from which no tracking data were not available were approximated by a 50 km buffer and a 50-100 km ring buffer around each colony according to the recommendations of a CCAMLR MPA planning workshop. Breeding locations and estimated abundance of breeding pairs were taken from Lynch and LaRue (2014). The tracking data were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). Jefferson Hinke (NOAA) kindly provided us with support running the R script. Highly suitable foraging habitats occurred about 50 km away from the colonies on King Georg Island, the colony in Hope Bay (Graham Land) and the colonies on the South Orkney Islands. Non-breeding Ad\'elie penguins (Pygoscelis adeliae): The map of potential foraging habitats of non-breeding P. adeliae is based on British Antarctic Survey (BAS) Inventory data from Phil Trathan (ID 754) and Mike Dunn and P. Trathan (ID 773, 779), a dataset from BAS (P. Trathan) and Instituto Ant\'artico Argentino (Mercedes Santos) (ID 753) and a dataset from the US AMLR Program from Jefferson Hinke and Wayne Trivelpiece (NOAA) (ID 910), which are stored in the Birdlife International\textquotesingles Seabird Tracking Database (data request: 20-10-2015). The tracking data were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). Jefferson Hinke (NOAA) kindly provided us with support running the R script. Highest habitat utilisation was concentrated in relative small areas (e.g., close to King Georg Island). However, the non-breeding Ad\'elies seemed to roam through large parts of the Weddell Sea. Emperor penguins (Aptenodytes forsteri): The probability map of A. forsteri occurrence was developed as a function of distance to colony and colony size from Fretwell et al. (2012, 2014) as well as from sea ice concentration from AMSR-E sea ice maps. Our model of emperor penguin foraging distribution during breeding season showed that the probability of occurrence is highest at the Halley and Dawson colony near Brunt Ice Shelf and at the Atka colony near Ekstrøm Ice Shelf. More information on the spatial analysis is given in working paper WG-EMM-16/03 and WG-SAM-17/30 (for T. antarctica) submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (EMM) and the CCAMLR Working Group on Statistics, Assessments and Modelling (SAM), respectively (available at https://www.ccamlr.org/en/wg-emm-16 and https://www.ccamlr.org/en/wg-s

Description: Here we provide two ArcGIS map packages with georeferenced files on the spatial distribution of seals in the wider Weddell Sea (Antarctica), which were created in the context of the development of a marine protected area in the Weddell Sea. Spatial distribution of seals based on aerial surveys: The map of the spatial distribution of crabeater seals is based on modelled seal abundances from Flores et al. (2008) and Forcada et al. (2012). These modelled abundances were supplemented by abundance data derived from Bester et al. (1995, 2002) and by point data from Pl\"otz et al. (2011a-e), which were translated into abundance values by the count method for line transect data. The calculated data on seal abundances from Pl\"otz et al. (2011a-e) and Bester et al. (1995, 2002) were interpolated using the inverse distance weighted method. The combined data set of modelled and interpolated abundances showed highest absolute seal abundances offshore the Riiser-Larsen Ice Shelf and Quarisen Ice Shelf. Spatial distribution of seals based on tracking data: The map of probability of seal occurrence is based on all tracking data publicly available for the wider Weddell Sea from the MEOP data portal "Marine Mammals Exploring the Oceans Pole to Pole" (data request: 14-11-2016). In addition, we have used MEOP data (UK data: ct27, ct70; German data: ct113, wd06, wd07) for which unconditional sharing is not yet accepted. These data were provided by Lars Boehme (University of St. Andrews) and Horst Bornemann (AWI), respectively. Furthermore, the data from the MEOP data portal were complemented by tracking data sets on southern elephant seals (Tosh et al. 2009, James et al. 2012), Weddell seals (McIntyre et al. 2013) and crabeater seals (Nachtsheim et al. 2016). All tracking data united were processed with a state-space model described by Johnson et al. (2008) and were implemented in the R package crawl (Johnson 2011). The tracking data analysis indicated frequent occurrence of seals in a larger area off the Brunt and Filchner Ice Shelf (approx. 25°W-40°W), and in smaller patches along the eastern Weddell Sea ice shelfs as well as in the region around the tip of the Antarctic Peninsula. More information on the spatial analysis is given in working paper WG-EMM-16/03 and WG-SAM-17/30 submitted to the CCAMLR Working Group on Ecosystem Monitoring and Management (EMM) and the CCAMLR Working Group on Statistics, Assessments and Modelling (SAM), respectively (available at https://www.ccamlr.org/en/wg-emm-16 and https://www.ccamlr.org/en/wg-sam-17

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Farris, A. S., Defne, Z., & Ganju, N. K. Identifying salt marsh shorelines from remotely sensed elevation data and imagery. Remote Sensing, 11(15), (2019): 1795, doi: 10.3390/rs11151795.

Description: Salt marshes are valuable ecosystems that are vulnerable to lateral erosion, submergence, and internal disintegration due to sea level rise, storms, and sediment deficits. Because many salt marshes are losing area in response to these factors, it is important to monitor their lateral extent at high resolution over multiple timescales. In this study we describe two methods to calculate the location of the salt marsh shoreline. The marsh edge from elevation data (MEED) method uses remotely sensed elevation data to calculate an objective proxy for the shoreline of a salt marsh. This proxy is the abrupt change in elevation that usually characterizes the seaward edge of a salt marsh, designated the “marsh scarp.” It is detected as the maximum slope along a cross-shore transect between mean high water and mean tide level. The method was tested using lidar topobathymetric and photogrammetric elevation data from Massachusetts, USA. The other method to calculate the salt marsh shoreline is the marsh edge by image processing (MEIP) method which finds the unvegetated/vegetated line. This method applies image classification techniques to multispectral imagery and elevation datasets for edge detection. The method was tested using aerial imagery and coastal elevation data from the Plum Island Estuary in Massachusetts, USA. Both methods calculate a line that closely follows the edge of vegetation seen in imagery. The two methods were compared to each other using high resolution unmanned aircraft systems (UAS) data, and to a heads-up digitized shoreline. The root-mean-square deviation was 0.6 meters between the two methods, and less than 0.43 meters from the digitized shoreline. The MEIP method was also applied to a lower resolution dataset to investigate the effect of horizontal resolution on the results. Both methods provide an accurate, efficient, and objective way to track salt marsh shorelines with spatially intensive data over large spatial scales, which is necessary to evaluate geomorphic change and wetland vulnerability.

Description: This project was supported by the U.S. Geological Survey (USGS) Coastal/Marine Natural Hazards and Resources Program as well as the Massachusetts O ce of Coastal Zone Management under interagency agreement 16ENMALQ006000.

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cochran, J. E. M., Braun, C. D., Cagua, E. F., Campbell, M. F., Hardenstine, R. S., Kattan, A., Priest, M. A., Sinclair-Taylor, T. H., Skomal, G. B., Sultan, S., Sun, L., Thorrold, S. R., & Berumen, M. L. Multi-method assessment of whale shark (Rhincodon typus) residency, distribution, and dispersal behavior at an aggregation site in the Red Sea. Plos One, 14(9), (2019): e0222285, doi:10.1371/journal.pone.0222285.

Description: Whale sharks (Rhincodon typus) are typically dispersed throughout their circumtropical range, but the species is also known to aggregate in specific coastal areas. Accurate site descriptions associated with these aggregations are essential for the conservation of R. typus, an Endangered species. Although aggregations have become valuable hubs for research, most site descriptions rely heavily on sightings data. In the present study, visual census, passive acoustic monitoring, and long range satellite telemetry were combined to track the movements of R. typus from Shib Habil, a reef-associated aggregation site in the Red Sea. An array of 63 receiver stations was used to record the presence of 84 acoustically tagged sharks (35 females, 37 males, 12 undetermined) from April 2010 to May 2016. Over the same period, identification photos were taken for 76 of these tagged individuals and 38 were fitted with satellite transmitters. In total of 37,461 acoustic detections, 210 visual encounters, and 33 satellite tracks were analyzed to describe the sharks’ movement ecology. The results demonstrate that the aggregation is seasonal, mostly concentrated on the exposed side of Shib Habil, and seems to attract sharks of both sexes in roughly equal numbers. The combined methodologies also tracked 15 interannual homing-migrations, demonstrating that many sharks leave the area before returning in later years. When compared to acoustic studies from other aggregations, these results demonstrate that R. typus exhibits diverse, site-specific ecologies across its range. Sightings-independent data from acoustic telemetry and other sources are an effective means of validating more common visual surveys.

Description: Financial support was provided in part by KAUST baseline research funds (to MLB), KAUST award nos. USA00002 and KSA 00011 (to SRT), and the U.S. National Science Foundation (OCE 0825148 to SRT and GBS).

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Costello, J. H., Colin, S. P., Gemmell, B. J., & Dabiri, J. O. Hydrodynamics of vortex generation during bell contraction by the hydromedusa Eutonina indicans (Romanes, 1876). Biomimetics, 4(3), (2019): 44, doi:10.3390/biomimetics4030044.

Description: Swimming bell kinematics and hydrodynamic wake structures were documented during multiple pulsation cycles of a Eutonina indicans (Romanes, 1876) medusa swimming in a predominantly linear path. Bell contractions produced pairs of vortex rings with opposite rotational sense. Analyses of the momentum flux in these wake structures demonstrated that vortex dynamics related directly to variations in the medusa swimming speed. Furthermore, a bulk of the momentum flux in the wake was concentrated spatially at the interfaces between oppositely rotating vortices rings. Similar thrust-producing wake structures have been described in models of fish swimming, which posit vortex rings as vehicles for energy transport from locations of body bending to regions where interacting pairs of opposite-sign vortex rings accelerate the flow into linear propulsive jets. These findings support efforts toward soft robotic biomimetic propulsion

Description: This research was supported by awards from the National Science Foundation (1536672, 1511721 to J.H.C.; 1536688, 1510929 to S.P.C., 1511996 to B.J.G. and 1511333 to J.O.D.).

Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Estrada-Gomez, S., Caldas Cardoso, F., Johana Vargas-Munoz, L., Carlos Quintana-Castillo, J., Arenas Gomez, C. M., Steffany Pineda, S., & Maria Saldarriaga-Cordoba, M. Venomic, transcriptomic, and bioactivity analyses of Pamphobeteus verdolaga venom reveal complex disulfide-rich peptides that modulate calcium channels. Toxins, 11(9), (2019): 496, doi:10.3390/toxins11090496.

Description: Pamphobeteus verdolaga is a recently described Theraphosidae spider from the Andean region of Colombia. Previous reports partially characterized its venom profile. In this study, we conducted a detailed analysis that includes reversed-phase high-performance liquid chromatography (rp-HPLC), calcium influx assays, tandem mass spectrometry analysis (tMS/MS), and venom-gland transcriptome. rp-HPLC fractions of P. verdolaga venom showed activity on CaV2.2, CaV3.2, and NaV1.7 ion channels. Active fractions contained several peptides with molecular masses ranging from 3399.4 to 3839.6 Da. The tMS/MS analysis of active fraction displaying the strongest activity to inhibit calcium channels showed sequence fragments similar to one of the translated transcripts detected in the venom-gland transcriptome. The putative peptide of this translated transcript corresponded to a toxin, here named ω-theraphositoxin-Pv3a, a potential ion channel modulator toxin that is, in addition, very similar to other theraphositoxins affecting calcium channels (i.e., ω-theraphotoxin-Asp1a). Additionally, using this holistic approach, we found that P. verdolaga venom is an important source of disulfide-rich proteins expressing at least eight superfamilies.

Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Boss, E., Sherwood, C. R., Hill, P., & Milligan, T. Advantages and limitations to the use of optical measurements to study sediment properties. Applied Sciences-Basel, 8(12), (2018):2692, doi:10.3390/app8122692.

Description: Measurements of optical properties have been used for decades to study particle distributions in the ocean. They are useful for estimating suspended mass concentration as well as particle-related properties such as size, composition, packing (particle porosity or density), and settling velocity. Measurements of optical properties are, however, biased, as certain particles, because of their size, composition, shape, or packing, contribute to a specific property more than others. Here, we study this issue both theoretically and practically, and we examine different optical properties collected simultaneously in a bottom boundary layer to highlight the utility of such measurements. We show that the biases we are likely to encounter using different optical properties can aid our studies of suspended sediment. In particular, we investigate inferences of settling velocity from vertical profiles of optical measurements, finding that the effects of aggregation dynamics can seldom be ignored.

Description: This work was supported by the Office of Naval Research and the United States Geological Survey Coastal and Marine Geology Program. The unique instrument platform and data acquisition system was designed and built by technical staff lead by Marinna Martini at the United States Geological Survey Woods Hole Coastal and Marine Science Center. This team was also responsible for deployment and recovery of the instrumentation. We thank the Woods Hole Oceanographic Institution (WHOI) MVCO staff for support during this experiment, and we thank the captains and crews of the R/V Connecticut and the R/V Tioga. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the United States Government. This paper has benefited significantly from insightful comments from D. Stramski, A. Aretxabaleta and two anonymous reviewers.