ALBERT

Description / Table of Contents: 1. General introduction --- 2. Morphological development of sensory and swimming organs and the central nervous system in the striped jack --- 2-1. Introduction --- 2-2. Materials and methods --- 2-2A. Materials --- 2-2B. Morphology --- 2-2C. Histology of eye, lateral line, muscle, bone and the central nervous system --- 2-3. Results --- 2-3A. Morphology --- 2-3B. Relative growth --- 2-3C. Ossification --- 2-3D. Muscle --- 2-3E. Eye --- 2-3F. Cephalic and trunk lateral lines --- 2-3G. The central nervous system --- 2-4. Discussion --- 2-4A. Morphological development related to swimming ability --- 2-4B. Development of sensory organs --- 2-4C. Development of the central nervous system --- 3. Ontogeny of schooling behavior and other behavioral traits in the striped jack --- 3-1. Introduction --- 3-2. Materials and methods --- 3-2A. Phototaxis --- 3-2B. Rheotaxis --- 3-2C. Optokinetic response --- 3-2D. Schooling behavior --- 3-2E. Association with floating objects --- 3-3. Results --- 3-3A. Phototaxis --- 3-3B. Rheotaxis --- 3-3C. Optokinetic response --- 3-3D. Schooling behavior --- 3-3E. Association behavior --- 3-4. Discussion --- 3-4A. Development of taxis in relation to sensory and swimming organs --- 3-4B. Ecological speculations on survival strategy and migratory behavior --- 4. Critical involvement of the central nervous system for the development of schooling behavior revealed by docosahexaenoic acid deficiency experiments --- 4-1. Introduction --- 4-2. Materials and methods --- 4-2A. Effect of dietary DHA on the growth, survival, and brain development in the striped jack --- 4-2B. Effect of dietary condition on behavior --- 4-2C. Incorporation of DHA into the central nervous system --- 4-3. Results --- 4-3A. Effect of dietary DHA on the growth, survival, and brain development in the striped jack --- 4-3B. Effect of dietary condition on the schooling behavior of yellowtail --- 4-3C. Incorporation of DHA into the central nervous system in the yellowtail --- 4-4. Discussion --- 5. Ontogeny of association behavior between jack mackerel and jellyfish --- 5-1. Introduction --- 5-2. Materials and methods --- 5-2A. Feeding on jellyfish --- 5-2B. Utilization of jellyfish as a prey collector --- 5-2C. Utilization of jellyfish as a refuge from predators --- 5-2D. Ontogenetic changes in the function of association between jack mackerel and jellyfish --- 5-2E. Underwater observation of fish assemblages associated with jellyfish --- 5-3. Results --- 5-3A. Feeding on jellyfish --- 5-3B. Utilization of jellyfish as a prey collector --- 5-3C. Utilization of jellyfish as a refuge from predators --- 5-3D. Ontogenetic changes of the function of association between jack mackerel and jellyfish --- 5-3E. Underwater observation of fish assemblages associated with jellyfish --- 5-4. Discussion --- 5-4A. Ontogeny of function in the association behavior of jack mackerel with jellyfish --- 5-4B. Ontogeny of mechanisms in associating with jellyfish --- 6. Behavioral ontogeny of common pelagic fishes with reference to the population replacement --- 6-1. Introduction --- 6-2. Materials and methods --- 6-2A. Fish husbandry --- 6-2B. Swimming speed --- 6-2C. Anti-predator performance --- 6-3. Results --- 6-3A. Growth --- 6-3B. Swimming speed and anti-predator performance --- 6-4. Discussion --- 6-4A. Growth performance of hatchery-reared pelagic fish larvae and comparison to wild conspecifics --- 6-4B. Swimming speeds in the context of feeding ecology --- 6-4C. Inter-specific difference of the ontogeny of anti-predator performance --- 6-4D. Environmental factors as a driving force of population replacement --- 7. General discussion: Towards the sustainable management of fisheries resources --- 7-1. Implications of ontogenetic study for the fisheries resource management --- 7-2. Perspectives for the sustainable management in fisheries resources

Description / Table of Contents: Towards State-of-the-Art Dynamical Modelling and Risk Assessment of Persistent Organic Pollutants (POPs) in the Global Environment / T. Kawai and I. C. Handoh / pp. 1-9 --- Teasing out the Non-Linearity in the POPs-Phytoplankton Bioconcentration Processes / M. Seto and I. C. Handoh / pp. 11-19 --- Comprehensive Assessment of Dioxin Contamination in Da Nang Airbase and Its Vicinities: Environmental Levels, Human Exposure and Options for Mitigating Impacts / N. H. Minh, T. Boivin, P. N. Canh and L. K. Son / pp. 21-29 --- Contamination Status of Dioxins in Sediments from Saigon River Estuary, Vietnam / A. Shiozaki, M. Someya, T. Kunisue, S. Takahashi, B. C. Tuyen, H. Takada and S. Tanabe / pp. 31-45 --- Bioaccumulation of Dioxins in the Benthic Fish from Hiroshima Bay / H. Tanaka, K. Kono and D. Ueno / pp. 47-54 --- Hydroxylated Polychlorinated Biphenyls in the Blood of Cetaceans Stranded along the Japanese Coast / S. Murata, K. Nomiyama, T. Kunisue, S. Takahashi, T. K. Yamada and S. Tanabe / pp. 55-66 --- Contamination Status of Organohalogen Compounds in Deep-Sea Fishes in Northwest Pacific Ocean, Off-Tohoku, Japan / T. Oshihoi, T. Isobe, S. Takahashi, T. Kubodera and S. Tanabe / pp. 67-72 --- Temporal Variation of Persistent Organochlorine Residues in Soils from Vietnam / V. D. Thao, V. D. Toan and M. Kawano / pp. 73-82 --- Organochlorines and Brominated Flame Retardants in Deep-Sea Ecosystem of Sagami Bay / S. Toyoshima, T. Isobe, K. Ramu, H. Miyasaka, K. Omori, S. Takahashi, S. Nishida and S. Tanabe / pp. 83-90 --- Contamination by PCBs and BFRs in Vietnamese Human Milk Associated with Recycling of E-waste / N. M. Tue, A. Sudaryanto, B. H. Nhat, S. Takahashi, P. H. Viet and S. Tanabe / pp. 91-97 --- Ecological Risk Assessment Using High Resolution Analysis of Polychlorinated Biphenyls (PCBs) / N. Kannan and G. Petrick / pp. 99-109 --- Residue Levels of OH-PCBs and PCBs in the Blood of Baikal Seals (Pusa sibirica) / D. Imaeda, K. Nomiyama, T. Kunisue, H. Iwata, O. Tsydenova, S. Takahashi, M. Amano, E. A. Petrov, V. B. Batoev and S. Tanabe / pp. 111-117 --- Contamination Status of Brominated Flame Retardants (BFRs) in Baikal Seals (Pusa sibirica) / T. Isobe, Y. Ochi, D. Imaeda, H. Sakai, S. Hirakawa, O. Tsydenova, M. Amano, E. Petrov, V. Batoev, H. Iwata, S. Takahashi and S. Tanabe / pp. 119-124 --- Levels of Brominated Flame Retardants in Sediments and Their Bioaccumulation Potential in Biota from Jakarta Bay and Its Surroundings, Indonesia / A. Sudaryanto, I. E. Setiawan, M. Ilyas, E. Soeyanto, A. S. Riadi, T. Isobe, S. Takahashi and S. Tanabe / pp. 125-131 --- Characterization of Brominated Flame Retardants in House Dust and Their Role as Non-Dietary Source for Human in Indonesia / A. Sudaryanto, T. Isobe, G. Suzuki, I. E. Setiawan, M. Ilyas, A. S. Riyadi, S. Takahashi and S. Tanabe / pp. 133-141 --- Contamination by Brominated Flame Retardants in Soil Samples from Open Dumping Sites of Asian Developing Countries / A. Eguchi, T. Isobe, A. Subramanian, A. Sudaryanto, K. Ramu, T. B. Minh, P. Chakraborty, N. H. Minh, T. S. Tana, P. H. Viet, S. Takahashi and S. Tanabe / pp. 143-151 --- Contamination and Accumulation Feature of Organotin Compounds in Common Cormorants (Phalacrocorax carbo) from Lake Biwa, Japan / H. Mizukawa, S. Takahashi, K. Nakayama, A. Sudo and S. Tanabe / pp. 153-161 --- Quantitative Analysis of Expression of Tributyltin (TBT)-Regulated Genes in TBT-Resistant Pseudomonas aeruginosa 25W / K. Fukushima, S. K. Dubey and S. Suzuki / pp. 163-166 --- Monitoring Trace Elements in Coastal Waters Using Sardine as a Bioindicator / D. Hayase, S. Horai, T. Isobe, T. W. Miller, S. Takahashi, K. Omori and S. Tanabe / pp. 167-175 --- Mass Mortality and Trace Element Residues in Isaza (Gymnogobius isaza) Collected from Lake Biwa, Japan / S. Horai, D. Hayase, S. Takahashi, T. Ishikawa, M. Kumagai and S. Tanabe / pp. 177-183 --- Is Arsenic a Potential Threat for Human Health in Indonesia? / M. Ilyas, A. Sudaryanto, Y. Anantasena, S. Takahashi and S. Tanabe / pp. 185-189 --- Genetic Polymorphism Influencing Arsenic Metabolism in Human / H. Takeshita, J. Fujihara, T. Agusa, S. Takahashi, H. Iwata and S. Tanabe / pp. 191-195 --- Aryl Hydrocarbon Receptor-Mediated Gene Expression by Chlorinated Polycyclic Aromatic Hydrocarbons and Cross-Talk with Estrogen Receptors / H. Sakakibara, T. Ohura, M. Morita, S. Hirabayashi, R. Kuruto-Niwa, T. Amagai and K. Shimoi / pp. 197-202 --- Characterization of the Organohalogen Compounds Which Affect Gene Expressions Mediated by Thyroid Hormone Receptors / H. Sakai, A. Kawashima, Y. Kashima and T. Yamada-Okabe / pp. 203-210 --- Abnormal Response Induced by Pesticides on Mammalian Immune System / S. Nishimoto, K. Kanda, M. Okabe, K. Akiyama, Y. Kakinuma and T. Sugahara / pp. 211-217 --- Paraquat Modulates the Differentiation of C2C12 Cells to Myotube / M. Okabe, K. Akiyama, S. Nishimoto, T. Sugahara and Y. Kakinuma / pp. 219-225 --- Diet as a Modifier of Benzo(a)pyrene Metabolism and Benzo(a)pyrene—Induced Colon Tumors in ApcMin mice / D. L. Harris, M. S. Niaz, J. D. Morrow, M. K. Washington and A. Ramesh / pp. 227-238 --- Occurrence and Concentrations of Persistent Personal Care Products, Organic UV Filters, in the Marine Environment / H. Nakata, S. Murata, R. Shinohara, J. Filatreau, T. Isobe, S. Takahashi and S. Tanabe / pp. 239-246 --- Synthetic Musk Fragrances in Human Breast Milk and Adipose Tissue from Japan / D. Ueno, M. Moribe, K. Inoue, T. Someya, N. Ryuda, M. Ichiba, T. Miyajima, T. Kunisue, H. In, K. Maruo and H. Nakata / pp. 247-252 --- Status of Environmental Contamination in Ghana, the Perspective of a Research Scientist / K. A. Asante and W. J. Ntow / pp. 253-260 --- Pollution Study in Manila Bay: Eutrophication and Its Impact on Plankton Community / K.-H. Chang, A. Amano, T. W. Miller, T. Isobe, R. Maneja, F. P. Siringan, H. Imai and S. Nakano / pp. 261-267 --- Growth Responses of Harmful Algal Species Microcystis (Cyanophyceae) under Various Environmental Conditions / H. Imai, K.-H. Chang and S. Nakano / pp. 269-275 --- Biodegradation of Microcystin-LR by Natural Bacterial Populations / P. M. Manage, C. Edwards and L. A. Lawton / pp. 277-285 --- Changes in Proteolytic Activities in Stored Seawater and Bacterial Isolates / C. W. Bong, Y. Obayashi and S. Suzuki / pp. 287-291 --- Identification of Phenanthrene Metabolites Produced by Polyporus sp. S133 / T. Hadibarata and S. Tachibana / pp. 293-299 --- Enhanced Chrysene Biodegradation in Presence of a Synthetic Surfactant / T. Hadibarata and S. Tachibana / pp. 301-308 --- Oxidative Degradation of Benzo[a]pyrene by the Ligninolytic Fungi / T. Hadibarata / pp. 309-316 --- Microbial Degradation of Crude Oil by Fungi Pre-Grown on Wood Meal / T. Hadibarata and S. Tachibana / pp. 317-322 --- Microbial Degradation of n-Eicosane by Filamentous Fungi / T. Hadibarata and S. Tachibana / pp. 323-329 --- Validity of the New Method for Imogolite Synthesis and Its Genetic Implication / Z. Abidin, N. Matsue and T. Henmi / pp. 331-341

Description / Table of Contents: 1. Introduction --- 2. Standard growth formula in fish population dynamics --- 2-1. Traditional growth formulae --- 2-2. Standard formula of RGF in fish population dynamics --- 2-3. Seasonal growth formula --- 2-4. Standard formula for seasonal growth --- 2-5. Parameter estimation and statistical test of growth formulae --- (Example 1) Fitting the growth formula to clam data. --- (Example 2) Fitting VBGF1 for Pacific hake data. --- 2-6. The generalized reproduction model --- 2-7. Parameter estimation for reproduction model --- 2-8. Supplement --- 3. Analysis of the body-size composition --- 3-1. Statistical model --- 3-2. Hasselblad method --- 3-3. Undetermined multiplier method --- 3-4. EM algorithm --- 3-5. Convergence criterion by diminishing mapping --- 3-6. Approximation of the Jacobi method --- 3-7. Difference between the iteration method and the EM algorithm --- (Example 3) Estimation of the age composition for the data of the porgy --- 3-8. Marquardt method --- 4. Estimation of the population size --- 4-1. Petersen method --- (Example 4) Estimation of the 95% interval of N when M = 60, n = 141, and r = 11. --- 4-2. Bayesian statistical method for the Petersen method --- 4-3. Bayesian statistical method by using the hyper-geometric distribution --- 4-4. Quadrat method --- 4-5. Bayesian statistical method for the quadrat method --- (Example 5) Estimation of the 95% interval of n when r = 5 and p = 0.1. --- 4-6. DeLury removal method --- (Example 6) Analysis of the data in Table 5. --- 4-7. Proof of the sum formulae of the binomial distribution and the hyper-geometric distribution --- 5. Survival models --- 5-1. VPA --- 5-2. VPA using mortality rates --- 5-3. Leslie matrix model --- 5-4. Linear programming for fishing equations --- 6. Summary

Description / Table of Contents: 1. Introduction --- 2. Biology of leptocephali --- 2-1. Developmental stages --- 2-2. Morphological features --- 2-3. Sensory organs --- 2-4. Feeding ecology --- 2-5. Physiology and energetics --- 2-6. Growth of leptocephali --- 2-7. Metamorphosis --- 2-8. Swimming behavior --- 3. Zoogeography of leptocephali --- 3-1. Taxonomic groups of eels --- 3-2. Spawning areas of eels --- 3-3. Distribution and abundance of leptocephali --- 3-4. Seasonal occurrence of leptocephali --- 4. Ecology of leptocephali --- 4-1. Depth distribution and vertical migration --- 4-2. Survival and predation --- 4-3. Recruitment behavior --- 5. General discussion and future perspectives --- 5-1. Biology of leptocephali --- 5-2. Leptocephalus growth --- 5-3. Zoogeography and diversity of leptocephali --- 5-4. The leptocephalus larval strategy --- 5-5. Oceanic changes and leptocephalus recruitment --- 5-6. Ecological significance of leptocephali in the surface layer --- 5-7. Future research perspectives

Description / Table of Contents: 1. Introduction --- 2. Phylogeny of the genus Anguilla --- 2-1. Morphological studies --- 2-2. Molecular phylogenetic approaches --- 2-3. A new species in the genus Anguilla --- 3. Life histories of temperate anguillids --- 3-1. Spawning areas of temperate eels --- 3-2. Larval migration of temperate eels --- 3-3. Growth phase and spawning migration --- 4. Population structure of temperate eels --- 5. Life histories of tropical anguillids --- 5-1. Spawning areas of tropical eels --- 5-2. Larval migration of tropical eels --- 5-3. Growth phase and spawning migration --- 6. Population structure of tropical eels --- 7. Discussion --- 7-1. Evolution of migration in anguillid eels --- 7-2. Management and conservation of eel resources

Description / Table of Contents: IOP Publishing presents Volume 6 of the open-access IOP Conference Series: Earth and Environmental Science (EES) as the online abstract book for the IARU International Scientific Congress on Climate Change: Global Risks, Challenges and Decisions (10–12 March, Copenhagen, Denmark). This abstracts-only volume of EES is quite different to standard IOP Conference Series proceedings volumes which contain full, peer-reviewed proceedings papers. This unique volume of more than 1400 abstracts, divided into 58 different sessions, contains all the oral and poster presentations from the Congress. In view of the importance of the Climate Change Congress as a scientific basis for the COP15 conference, we are delighted to offer this collection as a permanent record of current research devoted to climate change. We hope this compilation will contribute to future world-wide dialogue on climate change in the ongoing search to address the scientific, political, social and economic challenges ahead.

Description / Table of Contents: This volume of IOP Conference Series: Earth and Environmental Science presents a selection of papers that were given at the WMO/GEO Expert Meeting on an International Sand and Dust Storm Warning System hosted by the Barcelona Supercomputing Center – Centro Nacional de Supercomputación in Barcelona (Spain) on 7-9 November 2007 (http://www.bsc.es/wmo). A sand and dust storm (SDS) is a meteorological phenomenon common in arid and semi-arid regions and arises when a gust front passes or when the wind force exceeds the threshold value where loose sand and dust are removed from the dry surface. After aeolian uptake, SDS reduce visibility to a few meters in and near source regions, and dust plumes are transported over distances as long as thousands of kilometres. Aeolian dust is unique among aerosol phenomena: (1) with the possible exception of sea-salt aerosol, it is globally the most abundant of all aerosol species, (2) it appears as the dominating component of atmospheric aerosol over large areas of the Earth, (3) it represents a serious hazard for life, health, property, environment and economy (occasionally reaching the grade of disaster or catastrophic event) and (4) its influence, impacts, complex interactions and feedbacks within the Earth System span a wide range of spatial and temporal scales. From a political and societal point of view, the concern for SDS and the need for international cooperation were reflected after a survey conducted in 2005 by the World Meteorological Organization (WMO) in which more than forty WMO Member countries expressed their interest for creating or improving capacities for SDS warning advisory and assessment. In this context, recent major advances in research – including, for example, the development and implementation of advanced observing systems, the theoretical understanding of the mechanisms responsible for sand and dust storm generation and the development of global and regional dust models – represent the basis for developing applications focusing on societal benefit and risk reduction. However, at present there are interdisciplinary research challenges to overwhelm current uncertainties in order to reach full potential. Furthermore, the community of practice for SDS observations, forecasts and analyses is mainly scientifically based and rather disconnected from potential users. This requires the development of interfaces with operational communities at international and national levels, strongly focusing on the needs of people and factors at risk ... The general objective of the WMO/GEO Expert Meeting on an International Sand and Dust Storm Warning System was to discuss and recommend actions needed to develop a global routine SDS-WAS based on integrating numerical SDS prediction and observing systems, and on establishing effective cooperation between data producers and user communities in order to provide SDS-WAS products capable of contributing to the reduction of risks from SDS. The specific objectives were: to identify, present and suggest future real-time observations for forecast verification and dust surveillance: satellite, ground-based remote sensing (passive and active) and in-situ monitoring; to present ongoing forecasting activities; to discuss and identify user needs: health, air quality, air transport operations, ocean, and others; to identify and discuss dust research issues relevant for operational forecast applications; to present the concept of SDS-WAS and Regional Centers...

Description / Table of Contents: The Beyond Kyoto conference in Aarhus March 2009 was organised in collaboration with other knowledge institutions, businesses and authorities. It brought together leading scientists, policy-makers, authorities, intergovernmental organisations, NGO's, business stakeholders and business organisations. The conference was a joint interdisciplinary project involving many academic areas and disciplines. These conference proceedings are organised in central and recurring themes that cut across many debates on climate change, the climatic challenges as well as the solutions. In the front there is a short presentation of the conference concept. Part I of the proceedings focuses on issues related to the society – covering climate policy, law, market based instruments, financial structure, behaviour and consumption, public participation, media communication and response from indigenous peoples etc. Part II of the proceedings concerns the scientific knowledge base on climate related issues – covering climate change processes per se, the potential impacts of projected climate change on biodiversity and adaptation possibilities, the interplay between climate, agriculture and biodiversity, emissions, agricultural systems, increasing pressure on the functioning of agriculture and natural areas, vulnerability to extreme weather events and risks in respect to sea-level rise etc...

Description / Table of Contents: Reconstructing past climate and past ocean circulation demands the highest possible precision and accuracy which urges the scientific community to look at different sediment records such as the ones from coastal zones to deep-sea with a more complete set of technical and methodological tools. However, the information given by each tool varies in precision, accuracy and in significance according to their environmental settings. It is therefore essential to compare tools. With that in mind, and as part of the International year of Planet Earth, a workshop entitled `From deep-sea to coastal zones: Methods and Techniques for studying palaeoenvironments' took place in Faro (Portugal), from 25–29 February 2008 in order to: present several methods and techniques that can be used for studying sediments from deep-sea to coastal zones, namely for reconstructing palaeoenvironments in order to document past climatic changes and short to long-term environmental processes; allow cross experience between different fields and specialties, either from deep-sea to coastal zones or from micropaleontology to geochemistry; give the opportunity to students from different universities and countries to attend the workshop; publish a special volume on the presented methods and techniques during the workshop. The workshop was organized in four non-parallel sessions dealing with the use of micropaleontology, isotopes, biogeochemistry and sedimentology, as tools for palaeoenvironmental studies. The present IOP Conference Series: Earth and Environmental Science proceedings reflect this organization and papers are published in each theme. The papers are either short reviews or case studies and are highlighted below. The remains of microorganisms found in sediments are the main proxies used in micropaleontological studies. However, the link between fossilized remains and their living origin is not easy to reconstruct only based on the geologic/sedimentary record. Accordingly, Barbosa presents a review of the actual knowledge of living phytoplankton dynamics and the processes, or environmental conditions, which could contribute to the production of fossilized biogenic remains. In the next paper, de Vernal presents a review, based on several case studies, on how palynological fossils observed in sediments are used in tracing biogenic fluxes, characterizing sedimentary environments, or even reconstructing hydrographical conditions and productivity. The two other papers presented in the micropaleontological proxy section are case studies on the use of dinoflagellates (Rochon) and calcareous plankton remains (Guerreiro et al), respectively, to better understand their local or regional environmental living characteristics ant therefore their specific interpretation for palaeoenvironmental reconstruction at a regional scale. Isotopic proxies can be used either as provenance tracers or as chronometers of different processes. Once again, each study can provide a very specific framework of the proxies' use and it is very important to know and evaluate the limits of these tools in each environment and/or type of analyzed material. Accordingly, the two first articles deal with the study of organic carbon either by carbon and oxygen stable isotopes (Hélie) or by radiocarbon (Mollhenhauer and Rethemeyer) analysis. The two other articles in this section deal with the use of radioisotopes. Ghaleb reviews the methods for measuring short-lived radiosisotopes in sediments, giving examples of their use for estimating recent sedimentary accumulation rates; whereas Hillaire-Marcel reviews the potential use of U-series isotopes as radiochronometers in biogenic carbonates. Geochemistry groups more than one field of expertise. However, in the present section, inorganic geochemistry is not treated and both articles present work on a very specific, and at the same time very complex, compound of the organic matter realm: black carbon. As such, Veilleux et al present a density fractionation method for isolating the small quantities of soot-like and graphitic material usually found in natural samples, whereas González-Vila et al. illustrate the potential of the combined use of analytical pyrolysis and solid state 13C NMR to determine the presence of black carbon and to characterize the refractory organic matter in marine sediments from the Gulf of Cadiz (Spain). In the last section, two papers are presented and discuss sedimentological proxies. In their paper, using diffuse spectral reflectance data, Veiga-Pires and Mestre try to determine if `twinned cores' (or paired cores) can be used as duplicate records to increase the volume of sediments collected in the field, whereas Drago et al discuss the use of fish remains in sediments for the reconstruction of paleoproductivity. Each of the above papers benefited from the constructive comments of at least two reviewers and we wish to sincerely thank the reviewers for their timely evaluation. We also thank the participants, volunteers and organizers of the workshop for their implication, making this first workshop on Methods and Techniques for studying palaeoenvironments (METECH) a success. The workshop and this proceeding would not have been possible without the financial and logistical support of GEOTOP, CIMA, the Portuguese Foundation for Science and Technology (FACC07/1/1315) and IOP Conference Series: Earth and Environmental Science...

Description / Table of Contents: Early Japanese contributions to space weather research—1945-1960— / A. Nishida / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 1-22 --- Hydrodynamics, magnetohydrodynamics, and astrophysical plasmas / E. N. Parker / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 23-40 --- The 1960s—A decade of remarkable advances in middle atmosphere research / M. A. Geller / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 41-62 --- Hinode "a new solar observatory in space" / S. Tsuneta, L. K. Harra, and S. Masuda / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 63-75 --- Coronal mass ejections and space weather / N. Gopalswamy / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 77-120 / © TERRAPUB, Tokyo, 2009. No claim is made to original U.S. Government works. / [Full text] (PDF 3.9 MB) --- Magnetotail after Geotail, Interball and Cluster: Thin current sheets, fine structure, force balance and stability / L. Zelenyi, H. Malova, A. Artemyev, V. Popov, A. Petrukovich, D. Delcourt, and A. Bykov / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 121-170 --- Simulating solar 'climate' / M. Dikpati / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 171-199 --- Evidence for solar forcing: Some selected aspects / J. Beer and K. McCracken / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 201-216 --- Total solar irradiance variability: What have we learned about its variability from the record of the last three solar cycles? / C. Fröhlich / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 217-230 --- Mechanisms for solar influence on the Earth's climate / J. D. Haigh / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 231-256 --- Variability in the stratosphere: The sun and the QBO / K. Labitzke and M. Kunze / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 257-278 --- Gravity wave coupling from below: A review / R. A. Vincent / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 279-293 --- What we have learnt from CPEA (Coupling Processes in the Equatorial Atmosphere): A review / S. Fukao / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 295-336 --- Vertical coupling by the semidiurnal tide in Earth's atmosphere / J. M. Forbes / Climate and Weather of the Sun-Earth System (CAWSES): Selected Papers from the 2007 Kyoto Symposium, / pp. 337-348

Description / Table of Contents: The chapters in this volume represent an extensive review of the material presented by the invited speakers at a short course on Thermodynamics and Kinetics of Water-Rock Interaction held prior to the 19th annual V. M. Goldschmidt Conference in Davos, Switzerland (June 19-21, 2009). This volume stems from a convergence of a number of factors. First, there is a compelling societal need to resuscitate the field of the thermodynamics and kinetics of natural processes. This field is essential to quantify and predict the response of the Earth’s surface and crust to the disequilibria caused by the various natural and anthropic inputs of energy to our planet. As such, it serves as the basis for sustainable development and assuring the quality of life on the Earth; it serves as the key to understanding the long term future of radioactive waste storage, toxic metal mobility in the environment, the fate of CO2 injected into the subsurface as part of carbon sequestration efforts, quantifying the quality of petroleum reservoirs and generating novel methods of petroleum extraction, and the identification of new ore deposits. The recent interest in the weathering of continental surfaces and its impact on global elemental cycles and climate evolution has also brought new attention to the thermodynamics and kinetics of water-rock interactions as it has become evident that only a true mechanistic approach based on robust thermodynamic and kinetic laws and parameters can accurately model these processes. Yet, this field has, in many ways, atrophied over the past two decades. Relatively few students have pursued graduate research in this field; many of the great contributors to this field have retired or otherwise moved on. No doubt some of this atrophy was caused by economic factors. For roughly two decades from the mid-1980’s to the mid-2000’s the price of base metals and petroleum, when adjusted for inflation, were at lows not seen for over a generation. Some of this atrophy was also caused by past successes in this field; the development and success of computer generated thermodynamic databases, for example, giving the illusion that the work of scientists in this field was complete. A second factor motivating the creation of this volume was that it was requested by our graduate students. We currently coordinate two European Research Networks: MIR and MIN-GRO, and participate in two others GRASP and DELTA-MIN. As part of these networks we ran summer schools on the thermodynamics and kinetics of water-rock interaction in La Palma, Spain and in Anglet, France. In total theses classes were attended by roughly 100 students. By the end of these schools, we received numerous demands from our students requesting a book to help them follow the subject, as they, like most when introduced to thermodynamics and kinetics, got rapidly lost among the equations, symbols, and conventions, and standard states. This volume is an attempt to help these and others through these formalities towards applying the many advances available in thermodynamics and kinetics towards solving academic and societal problems. A third factor is that we felt this volume would be a great way of getting many of our friends to write up that review paper that we have been hoping they would write for years. The chapters in this volume represent our effort to do just this. We recall Dave Sherman first explaining to us how to perform first principle thermodynamics calculations at an European Research Conference in Crete, Greece during 1999. We recall that his explanations were so clear that we wished to have recorded it. Manolo Prieto gave in La Palma, Spain a lecture summarizing decades of research on the thermodynamics of solid solutions. This lecture opened up our eyes to how little we know about the chemistry of minor and trace elements, and how they can drastically alter the pathways of reactions in nature. He also made us aware of the thermodynamic formalism available for advancing our ability to quantify the behavior of these elements in complex natural systems. Another lecture we left knowing that we needed a permanent record of was that of Dmitrii Kulik on the thermodynamics of sorption in Jena, Germany. After leaving Dmitrii’s talk, we felt that we finally understood the differences between the various models used to describe sorption. Yet another chapter we felt essential to see published is a summary of the latest advances in mineral precipitation kinetics. We have followed the work of Bertrand Fritz for years as he developed a new formalism for quantifying mineral nucleation and growth, and in particular practical approaches to apply this formalism to complex systems. We are very pleased we were able to convince him to contribute his chapter to this volume. Other chapters we believed were essential to include was that of Andrew Putnis, who has gathered extensive evidence for the existence of mineral transformation reactions, a novel and widespread mechanism in nature. Through this volume we were able to get Andrew to bring all this evidence together in a single place, where we can see clearly the significance and pervasiveness of these reactions. Similarly Jichwar Ganor has, over the past two decades, gathered a variety of evidence showing how organic compounds affect both thermodynamics and kinetics. Jichwar’s chapter brings all this evidence together in one place for the first time. This volume is completed with the future of this field, the application of thermodynamics and kinetics to natural phenomena. Two of the leaders in the development and application of reactive transport modeling are Carl Steefel and Chen Zhu. Carl, who has written what may be the most advanced reactive transport modeling code currently available, together with Kate Malher has written an informative summary of recent advances in reactive transport modeling. Chen then shows how the use of these models provides insight into the relative role of dissolution and precipitation kinetics in natural processes. This volume finishes with insightful applications of reactive transport modeling together with field observations to understand chemical weathering from the centimeter to the regional scale by Susan Brantley, Art White and Yves Goddéris.

Description / Table of Contents: Although it is generally accepted that the Arctic Ocean is a very sensitive and important region for changes in the global climate, this region is the last major physiographic province of the earth whose short-and long-term geological history is much less known in comparison to other ocean regions. This lack of knowledge is mainly caused by the major technological/logistic problems in reaching this harsh, ice-covered region with normal research vessels and in retrieving long and undisturbed sediment cores. During the the last about 20 years, however, several international and multidisciplinary ship expeditions, including the first scientific drilling on Lomonosov Ridge in 2004, a break-through in Arctic research, were carried out into the central Artic and its surrounding shelf seas. Results from these expeditions have greatly advanced our knowledge on Arctic Ocean paleoenvironments. Published syntheses about the knowledge on Arctic Ocean geology, on the other hand, are based on data available prior to 1990. A comprehensive compilation of data on Arctic Ocean paleoenvironment and its short-and long-term variability based on the huge amount of new data including the ACEX drilling data, has not been available yet. With this book, presenting (1) detailed information on glacio-marine sedimentary processes and geological proxies used for paleoenvironmental reconstructions, and (2) detailed geological data on modern environments, Quaternary variability on different time scales as well as the long-term climate history during Mesozoic-Tertiary times, this gap in knowledge will be filled.

Description / Table of Contents: 1. Introduction --- 2. Eel as an experimental fish for studying liver functions --- 2-1. Availability of eel (Anguilla japonica) as an experimental fish --- 2-2. Perfusion of eel liver --- 2-3. Primary culture of eel hepatocytes --- 2-3A. Isolated eel hepatocytes --- 2-3B. Primary culture of eel hepatocytes --- 3. Glucose metabolisms in eel liver --- 3-1. Gluconeogenesis in rat liver --- 3-2. Gluconeogenesis in eel liver --- 3-2A. Gluconeogenesis by perfused eel liver --- 3-2B. Gluconeogenesis by isolated eel hepatocytes and cultured eel hepatocytes --- 3-3. Phosphoenolpyruvate synthesis pathway in eel liver --- 3-3A. Effects of inhibitors --- 3-3B. Subcellular distribution of enzymes --- 3-3C. Effects of leucine and other amino acids --- 3-3D. Effect of oleic acid --- 3-4. Comparison of PEP synthesis pathways between eel, rat, and pigeon liver --- 3-5. Glycogen metabolisms in eel liver --- 4. Lipoprotein metabolisms in eel liver --- 4-1. Characteristics of fish serum lipoproteins --- 4-2. Lipoproteins secreted by primary cultured eel hepatocytes --- 4-3. Effects of maturation on eel lipoprotein metabolism --- 4-3A. Comparison of body length, body weight, gonad-somatic index, and plasma thyroxine between silver and yellow eels --- 4-3B. Comparison of plasma lipoproteins between silver and yellow eels --- 4-3C. Comparison of lipoprotein synthesis by cultured hepatocytes of silver and yellow eels --- 4-3D. Effect of thyroxine on lipoprotein synthesis by cultured eel hepatocytes --- 4-4. HDL binding to primary cultured eel hepatocytes --- 4-4A. Stimulatory effect of HDL on VLDL-like lipoprotein synthesis and secretion --- 4-4B. ApoAI and apoAII of HDL do not function as a ligand for eel HDL receptor --- 4-4C. Ganglioside of HDL functions as a ligand for an HDL receptor of eel hepatocytes --- 4-4C-1. Ganglioside GM4 isolated from eel serum HDL --- 4-4C-2. GM4 as the ligand for eel HDL receptor --- 4-5. Vitellogenin induction by cultured eel hepatocytes --- 4-5A. Vitellogenin induction by estradiol-17β --- 4-5B. Vitellogenin induction by cultured eel hepatocytes --- 4-5C. Stimulatory effect of HDL on vitellogenin synthesis and secretion --- 5. Discussion --- 5-1. Integrity of a perfused eel liver, isolated and cultured hepatocytes --- 5-2. Gluconeogenesis and glycogen metabolisms in eel liver --- 5-2A. Gluconeogenesis --- 5-2B. Glycogen metabolisms --- 5-3. Lipoprotein metabolisms in eel liver --- 5-3A. Lipoprotein synthesized by cultured eel hepatocytes --- 5-3B. HDL metabolism --- 5-3C. Induction of vitellogenin synthesis by cultured eel hepatocytes. --- 5-4. General Discussion

Description / Table of Contents: The 14th International Symposium for the Advancement of Boundary Layer Remote Sensing (ISARS 2008) addresses acoustical, optical and microwave techniques to probe the lower part of the atmosphere. The symposium focuses on the physical basis of remote sensing techniques and new instruments. A theme for the conference is also various applications of remote sensing, this year with special emphasis on wind energy. ISARS is an informal association of scientists from all over the world which organizes a symposium every second year. While the abbreviation ISARS has remained unchanged since the start in Calgary 1981, the words have changed from International Symposium on Acoustic Remote Sensing and Associated Techniques of the Atmosphere and Oceans because other techniques than the acoustic have become important for boundary layer remote sensing. Specifically lasers for remote wind sensing are developing rapidly. By the end of each symposium the chairman of the next has been elected. So far the symposia have taken place in different countries each time with different chairs. The scientific organizing committee, which consists mainly of chair persons of previous symposia, maintains the continuity of themes and of the organization in general. After the last symposium held in Garmisch-Partenkirchen, many of the papers appeared in revised and improved form in a special issue of Meteorologische Zeitschrift. A similar special issue is also planned to follow ISARS 2008. I wish to express my gratitude to the scientific organizing committee for valuable advice and to the local organizing committee for all their effort with the conference papers and the conference itself. Jakob Mann, Conference Chair

Description / Table of Contents: This volume of IOP Conference Series: Earth and Environmental Science presents a selection of papers that were given at the 24th Conference of the Danube Countries. Within the framework of the International Hydrological Program IHP of UNESCO. Since 1961 the Danube countries have successfully co-operated in organizing conferences on Hydrological Forecasting and Hydrological Water Management Issues. The 24th Conference of the Danube Countries took place between 2-4 June 2008 in Bled, Slovenia and was organized by the National Committee of Slovenia for the International Hydrological Program of UNESCO, under the auspices of the President of Republic of Slovenia. It was organized jointly by the Slovenian National Commission for UNESCO and the Environmental Agency of the Republic of Slovenia, under the support of UNESCO, WMO, and IAHS...

Description / Table of Contents: Measuring and Monitoring POPs: A Critique / R. S. S. Wu, A. K. Y. Chan, B. Richardson, D. W. T. Au, J. K. H. Fong, P. K. S. Lam and J. P. Giesy / pp. 1-6 --- Fish Models in Impact Assessment of Carcinogenic Potential of Environmental Chemical Pollutants: An Appraisal of Hermaphroditic Mangrove Killifish Kryptolebias marmoratus / S. Raisuddin and J.-S. Lee / pp. 7-15 --- Research on Ecotoxicology and Applications in Singapore: Description of the Sponge Aggregation Assay / B. Goh / pp. 17-29 --- Perspective of Ecotoxicological Conduction for Water Quality Monitoring in Thailand / N. Tapaneeyakul / pp. 31-35 --- Chronic Effects of Waterborne PFOS Exposure on Growth, Development, Reproduction and Hepatotoxicity in Zebrafish / Y. Du, X. Shi, K. Yu, C. Liu and B. Zhou / pp. 37-54 --- Testicular Toxicity of Arsenic on Spermatogenesis in Fish / F. T. Celino, S. Yamaguchi, C. Miura and T. Miura / pp. 55-60 --- Prostanoid Signaling Mediates Circulation Failure Caused by TCDD in Developing Zebrafish / H. Teraoka, A. Kubota, Y. Kawai and T. Hiraga / pp. 61-80 --- Molecular Basis for Differential Dioxin Sensitivity in Birds: Characterization of Avian AHR Isoforms / E.-Y. Kim, H. Iwata, T. Yasui, N. Inoue, J.-S. Lee, D. G. Franks, S. I. Karchner, M. E. Hahn and S. Tanabe / pp. 81-86 --- Application of Bioassays for the Detection of Dioxins and Dioxin-like Compounds in Wastes and the Environment / H. Takigami, G. Suzuki and S. Sakai / pp. 87-94 --- Modulation of Expression of Oxidative Stress Genes of the Intertidal Copepod Tigriopus japonicus after Exposure to Environmental Chemicals / J.-S. Lee and S. Raisuddin / pp. 95-105 --- Application of Ascidian DNA Microarray Analysis for Risk Assessment of Marine Chemical Pollutants / K. Azumi, S. Amano, S. V. Sabau, A. Kamimura, N. Satoh and R. Koyanagi / pp. 107-110 --- Immune Gene Expression Levels Correlate with the Phenotype of Japanese Flounder Exposed to Heavy Oil / J.-Y. Song, K. Nakayama, Y. Murakami and S.-I. Kitamura / pp. 111-122 --- Yeast OMICS System for Environmental Toxicology / Y. Tanaka, T. Higashi, R. Rakwal, J. Shibato, S. Wakida and H. Iwahashi / pp. 123-132 --- Genomic Response in Daphnia to Chemical Pollutants / H. Watanabe, K. Kobayashi, Y. Kato, S. Oda, R. Abe, N. Tatarazako and T. Iguchi / pp. 133-142 --- Medaka DNA Microarray: A Tool for Evaluating Physiological Impacts of Various Toxicants / K. Kishi, E. Kitagawa, H. Iwahashi, K. Suzuki and Y. Hayashi / pp. 143-154 --- Sensing of Heavy Metals Using Caenorhabditis elegans DNA Microarray / N. Tominaga, T. Matsuno, S. Kohra and K. Arizono / pp. 155-161 --- Application of Microarray Technology to Toxicity Evaluation in Wild Common Cormorants Contaminated with Persistent Organic Pollutants / K. Nakayama, H. Iwata, L. Tao, K. Kannan, M. Imoto, E.-Y. Kim, K. Tashiro and S. Tanabe / pp. 163-170 --- Effects of Heavy Oil on the Developing Japanese Flounder Paralichthys Olivaceus / H. Nokame, S.-I. Kitamura, K. Nakayama, S. Matsuoka, H. Sakaguchi and Y. Murakami / pp. 171-178 --- Genetic Polymorphisms Influencing Arsenic Metabolism in Human: Evidence from Vietnam / T. Agusa, J. Fujihara, T. B. Minh, P. T. K. Trang, H. Takeshita, H. Iwata, P. H. Viet and S. Tanabe / pp. 179-185 --- Low Induction Potencies of Cytochrome P450 2B and 3A by Persistent Organic Pollutants in Baikal Seal (Pusa sibirica) / H. Sakai, H. Iwata, E.-Y. Kim, E. A. Petrov and S. Tanabe / pp. 187-195 --- Effects of Dioxins and Related Compounds in the Liver of Wild Baikal Seals: An Implication from a Toxicogenomic Approach / S. Hirakawa, D. Imaeda, K. Nakayama, E.-Y. Kim, T. Kunisue, S. Tanabe, E. A. Petrov, V. B. Batoev and H. Iwata / pp. 197-205 --- Interspecies Difference in Susceptibility of TCDD-induced Avian CYP1A5 Transactivation is Dependent on AHR1, not on CYP1A5 Promoter/Enhancer Region / J.-S. Lee, E.-Y. Kim, H. Iwata and S. Tanabe / pp. 207-224 --- Molecular Characterization of Avian Metallothionein (MT) 1 and 2 Isoforms: mRNA Expression, Transactivation Potency, and Detoxification Potential Associated with Element Exposure / D.-H. Nam, E.-Y. Kim and H. Iwata / pp. 225-239 --- Vacuolar-type H+-Translocating ATPase is the Target of Tributyltin Chloride / K. Akiyama, S. Chardwiriyapreecha, T. Chahomchuen, N. Sugimito, T. Sekito, S. Nishimoto, T. Sugahara and Y. Kakinuma / pp. 241-249 --- Characterization of the Vacuolar Transporters for Amino Acid Recycling in Yeast Autophagy / T. Chahomchuen, T. Sekito, K. Hondo, S. Nishimoto, T. Sugahara and Y. Kakinuma / pp. 251-261 --- The Structure-Activity Relationships of Flaxseed Lignan, Secoisolariciresinol / T. Sugahara, S. Yamauchi, S. Nishimoto, A. Kondo, F. Ohno, S. Tominaga, Y. Nakashima, T. Kishida, K. Akiyama, M. Maruyama and Y. Kakinuma / pp. 263-268 --- Risk Assessment of Heavy Oil on Terrestrial Mammals / S. Nishimoto, M. Yamawaki, S.-I. Kitamura, K. Akiyama, Y. Kakinuma and T. Sugahara / pp. 269-274 --- The Role of the Earthworm, Pheretima (Metaphire) hilgendorfi, in Terrestrial Ecosystem Nutrient Cycling / M. Nozaki, C. Miura, Y. Tozawa and T. Miura / pp. 275-279 --- Toxicological Effects of Heavy Oil on Carp by NMR-based Metabolic Profiling of Plasma / S. Uno, E. Kokushi and J. Koyama / pp. 281-289 --- In vitro and in vivo Estrogenic Effects of Fluorotelomer Alcohols in Medaka (Oryzias latipes) / H. Ishibashi, R. Yamauchi, M. Matsuoka, J.-W. Kim, M. Hirano, A. Yamaguchi, N. Tominaga and K. Arizono / pp. 291-301 --- Expression Analysis of Ecdysone Receptor and Ultraspiracle through Molting Period in Mysid Crustacean, Americamysis bahia / M. Hirano, H. Ishibashi, R. Yamauchi, J.-W. Kim and K. Arizono / pp. 303-310 --- Temporal Variation of PCDDs, PCDFs and PCBs in Baikal Seals (Pusa sibirica) / D. Imaeda, T. Kunisue, Y. Ochi, H. Iwata, O. Tsydenova, S. Takahashi, M. Amano, E. A. Petrov, V. B. Batoev and S. Tanabe / pp. 311-320 --- Hydroxylated Polychlorinated Biphenyls in the Blood of Cetacean Species Stranded along the Japanese Coast / S. Murata, T. Kunisue, S. Takahashi, T. K. Yamada and S. Tanabe / pp. 321-330 --- Polybrominated Diphenyl Ethers and Hexabromocyclododecanes in Japanese Human Adipose Tissues / T. Isobe, H. Oda, N. Takayanagi, T. Kunisue, M. Nose, T. Yamada, H. Komori, N. Arita, N. Ueda, S. Takahashi and S. Tanabe / pp. 331-338 --- Spatial Distribution and Accumulation of Organohalogen Compounds in Human Breast Milk from the Philippines / G. Malarvannan, T. Kunisue, T. Isobe, A. Sudaryanto, S. Takahashi, M. Prudente and S. Tanabe / pp. 339-347 --- Cell-to-cell Contact is Required for Transfer of Tetracycline Resistance Gene tet(M) in Marine Bacteria / F. A. Neela, N. Nagahama and S. Suzuki / pp. 349-353 --- Occurrence Rates of Sulfamethoxazole and Erythromycin-Resistant Bacteria and Drug Concentrations in Wastewater of Integrated Aquaculture-Agriculture (VAC) Sites in Northern Vietnam / P. T. P. Hoa, S. Managaki, N. Nakada, H. Takada, D. H. Anh, P. H. Viet and S. Suzuki / pp. 355-359 --- Comparative Study of Pesticide Effects (Herbicide and Fungicide) on Zooplankton Community / K.-H. Chang, M. Sakamoto, J.-Y. Ha, T. Murakami, Y. Miyabara, S. Nakano, H. Imai, H. Doi and T. Hanazato / pp. 361-366 --- Succession of Harmful Algae Microcystis (Cyanophyceae) Species in a Eutrophic Pond / H. Imai, K.-H. Chang, M. Kusaba and S. Nakano / pp. 367-372

Description / Table of Contents: 1. Introduction --- 2. Mitochondrion-rich (MR) cells --- 2-1. General characteristics of MR cells --- 2-2. Molecular mechanisms of ion-transporting functions of MR cells --- 3. Euryhalinity and stenohalinity of teleosts --- 4. Mozambique tilapia --- 4-1. MR cells in the yolk-sac membrane of tilapia embryos and larvae --- 4-2. FW- and SW-type MR cells in tilapia embryos and larvae --- 4-3. Functions of multicellular complexes of SW-type MR cells --- 4-4. Functional differentiation of MR cells in the yolk-sac membrane --- 4-5. Functional classification of MR cells in the yolk-sac membrane --- 4-6. "Yolk ball" incubation system --- 4-7. Salinity tolerance of adult tilapia --- 4-8. Possible osmoreception by MR cells --- 5. Killifish --- 5-1. Transitional processes of MR-cell distribution during early life stages --- 5-2. Distinct FW- and SW-type MR cells --- 5-3. Functional alteration and replacement of MR cells --- 5-4. Ion-absorbing mechanisms of MR cells --- 6. Chum salmon --- 6.1. Hypoosmoregulatory ability of chum salmon embryo --- 6-2. Seawater adaptability in chum salmon fry --- 6-3. MR-cell turnover in the gills of chum salmon fry --- 6-4. Loss of hypoosmoregulatory ability in mature chum salmon --- 7. Japanese eel --- 7-1. Epidermal MR cells in embryos and larvae --- 7-2. Ontogenic changes in MR cells during leptocephalus and glass eel stages --- 7-3. MR cells in glass eel acclimated to FW --- 7-4. Gill MR cells in eel cultured in FW and those acclimated to SW --- 7-5. MR cells in yellow and silver eel --- 8. Fugu --- 8-1. Low-salinity tolerance of fugu --- 8-2. Gill MR cells in fugu --- 8-3. Functional significance of prolactin in a marine teleost of fugu --- 8-4. Comparison of growth in fugu reared in 25 and 100% SW. --- 9. Japanese dace --- 9-1. Acid tolerance of Osorezan dace --- 9-2. Molecular mechanisms of acid adaptation --- 10. Conclusions and future perspectives

Description / Table of Contents: Minerals are intrinsically resistant to the processes that homogenize silicate liquids—their compositions thus yield an archive of volcanic and magmatic processes that are invisible at the whole rock scale. New experiments, and recent advances in micro-analytical techniques open a new realm of detail regarding the mineralogical record; this volume summarizes some of this progress. The alliance of the sub-fields reviewed in this volume bear upon fundamental issues of volcanology: At what depths are eruptions triggered, and over what time scales? Where and why do magmas coalesce before ascent? If magmas stagnate for thousands of years, what forces are responsible for initiating final ascent, or the degassing processes that accelerate upward motion? To the extent that we can answer these questions, we move towards formulating tests of mechanistic models of volcanic eruptions (e.g., Wilson, 1980; Slezin, 2003; Scandone et al., 2007), and hypotheses of the tectonic controls on magma transport (e.g., ten Brink and Brocher, 1987; Takada, 1994; Putirka and Busby, 2007). Our goal, in part, is to review how minerals can be used to understand volcanic systems and the processes that shape them; we also hope that this work will spur new and integrated studies of volcanic systems. Our review begins by tracing the origins of mineral grains, and methods to estimate pressures (P) and temperatures (T) of crystallization. Hammer shows how "dynamic" experiments (conducted with varying P or T) yield important insights into crystal growth. Chapters by Putirka, Anderson, and Blundy and Cashman review various igneous geothermometers and geobarometers and introduce new calibrations. Among these chapters are many familiar models involving olivine, amphibole, feldspar, pyroxene, and spinel. Blundy and Cashman introduce new methods based on phase equilibria, and in another chapter, Hansteen and Klügel review P estimation based on densities of entrapped fluids and appropriate equations of state. Rutherford's chapter returns to the issue of disequilibrium, with a review of methods to estimate magma ascent rates, and a summary of results. Our volume then moves to a review of melt inclusions. Kent shows how pre-mixed magma compositions can be preserved as inclusions, providing a window into pre-eruptive conditions. Métrich and Wallace review the volatile contents in basaltic melt inclusions and "magma degassing paths". Such methods rely upon vapor saturation pressures, which are derived from experimentally calibrated models. Chapters by Moore and Blundy and Cashman test two of the most important models, by Newman and Lowenstern (2002) (VolatileCalc) and Papale et al. (2006). Moore provides a guide to the appropriate use of these models, and their respective errors. The next four chapters document insights obtained from isotopic studies and diffusion profiles. Ramos and Tepley review developments of micro-analytical isotope measurements, which now have the potential to elucidate even the most cryptic of open system behaviors. Cooper and Reid examine the time scales for such processes through U-series age dating techniques, and Bindeman reviews oxygen isotopes and their uses as tracers of both magmas and crystals. Costa then reviews yet another means to estimate the rates of magmatic processes, using mineral diffusion profiles, with important implications for magma processing. In the next two chapters, Streck reviews an array of imaging methods and mineral textures, and their potential for disentangling mixed magmas, and Armienti takes a new look at the analysis of crystal size distributions (CSD), with applications to Mt. Etna. Our volume concludes with a chapter by Bachmann and Bergantz summarizing compositional zonations and a review of the thermal and compositional forces that drive open system behavior. Finally, descriptions of many of the most common analytical approaches are also reviewed within these chapters. Analytical topics include: secondary ion mass spectrometry (Blundy and Cashman; Kent); electron microprobe (Blundy and Cashman; Kent; Métrich and Wallace; laser ablation ICP-MS (Kent; Ramos and Tepley); Fourier transform infrared spectroscopy (Moore; Métrich and Wallace); microsampling and isotope mass spectrometry (Ramos and Tepley); U-series measurement techniques (Cooper and Reid); Nomarski differential interference contrasts (Streck); micro-Raman spectroscopy (Métrich and Wallace); back-scattered electron microscopy, and cathodoluminescence (Blundy and Cashman). As noted, our hope is that integrated studies can bring us closer to understanding how volcanic systems evolve and why eruptions occur. Our primary goal is to review how minerals can be used to understand volcanic systems; we also hope that this review might spur new and integrated studies of volcanic systems.

Description / Table of Contents: Hydrogen may be the most abundant element in the universe, but in science and in nature oxygen has an importance that is disproportionate to its abundance. Human beings tend to take it for granted because it is all around us and we breathe it, but consider the fact that oxygen is so reactive that in a planetary setting it is largely unstable in its elemental state. Were it not for the constant activity of photosynthetic plants and a minor amount of photo dissociation in the upper atmosphere, we would not have an oxygen-bearing atmosphere and we would not be here. Equally, the most important compound of oxygen is water, without which life (in the sense that we know it) could not exist. The role of water in virtually all geologic processes is profound, from formation of ore deposits to igneous petrogenesis to metamorphism to erosion and sedimentation. In planetary science, oxygen has a dual importance. First and foremost is its critical role in so many fundamental Solar System processes. The very nature of the terrestrial planets in our own Solar System would be much different had the oxygen to carbon ratio in the early solar nebula been somewhat lower than it was, because elements such as calcium and iron and titanium would have been locked up during condensation as carbides, sulfides and nitrides and even (in the case of silicon) partly as metals rather than silicates and oxides. Equally, the role of water ice in the evolution of our Solar System is important in the early accretion and growth of the giant planets and especially Jupiter, which exerted a major control over how most of the other planets formed. On a smaller scale, oxygen plays a critical role in the diverse kinds of physical evolution of large rocky planets, because the internal oxidation state strongly influences the formation and evolution of the core, mantle and crust of differentiated planets such as the Earth. Consider that basaltic volcanism may be a nearly universal phenomenon among the evolved terrestrial planets, yet there are basalts and basalts. The basalts of Earth (mostly), Earth's Moon, Vesta (as represented by the HED meteorites) and Mars are all broadly tholeiitic and yet very different from one another, and one of the primary differences is in their relative oxidation states (for that matter, consider the differences between tholeiitic and calc-alkaline magma series on Earth). But there is another way that oxygen has proven to be hugely important in planetary science, and that is as a critical scientific clue to processes and conditions and even sources of materials. Understanding the formation and evolution of our Solar System involves reconstructing processes and events that occurred more than 4.5 Ga ago, and for which the only contemporary examples are occurring hundreds of light years away. It is a detective story in which most of the clues come from the laboratory analysis of the products of those ancient processes and events, especially those that have been preserved nearly unchanged since their formation at the Solar System's birth: meteorites; comets; and interplanetary dust particles. For example, the oxidation state of diverse early Solar System materials ranges from highly oxidized (ferric iron) to so reducing that some silicon exists in the metallic state and refractory lithophile elements such as calcium exist occur in sulfides rather than in silicates or carbonates. These variations reflect highly different environments that existed in different places and at different times. Even more crucial has been the use of oxygen 3-isotope variations, which began almost accidentally in 1973 with an attempt to do oxygen isotope thermometry on high-temperature solar nebula grains (Ca-, Al-rich inclusions) but ended with the remarkable discovery (see Clayton 2008) of non-mass-dependent oxygen isotope variations in high-temperature materials from the earliest Solar System. The presolar nebula was found to be very heterogeneous in its isotopic composition, and virtually every different planet and asteroid for which we have samples has a unique oxygen-isotopic fingerprint.

Description / Table of Contents: Plenary Lectures --- Fisheries Management: Status and Challenges / Ichiro Nomura / pp. 1-16 --- Exploring the BOFFFF Hypothesis Using a Model of Southern African Deepwater Hake (Merluccius paradoxus) / John G. Field, Coleen L. Moloney, Louis du Buisson, Astrid Jarre, Tore Stroemme, Marek R. Lipinski and Paulus Kainge / pp. 17-26 --- Effects of Fishing on Inter and Intra Stock Diversity of Marine Resources / Gudrun Marteinsdóttir and Heidi Pardoe / pp. 27-43 --- Knowledge on How To Achieve Sustainable Fisheries / Ray Hilborn / pp. 45-56 --- The Role of Docosahexaenoic and Arachidonic Acids as Determinants of Evolution and Hominid Brain Development / Michael A. Crawford, C. Leigh Broadhurst, Claudio Galli, Kebreab Ghebremeskel, Holm Holmsen, Letten F. Saugstad, Walter F. Schmidt, Andrew J. Sinclair and Stephen C. Cunnane / pp. 57-76 --- Genomics and the Genome Duplication in Salmonids / Ben F. Koop and William S. Davidson / pp. 77-86 --- A Tale of Two Initiatives: Integrated Coastal Management in Xiamen and Batangas Bay Region / Thia-Eng Chua / pp. 87-102 --- Keynote 1: Fisheries and Fish Biology --- Age-validated Longevity of Fishes: Its Importance for Sustainable Fisheries / Gregor M. Cailliet and Allen H. Andrews / pp. 103-120 --- Monitoring Prey Availability via Data Loggers Deployed on Seabirds: Advances and Present Limitations / C. A. Bost, A. Jaeger, W. Huin, P. Koubbi, L. G. Halsey, H. Hanuise and Y. Handrich / pp. 121-137 --- Refocusing Stock Assessment in Support of Policy Evaluation / André E. Punt / pp. 139-152 --- Hatchery Stocking for Restoring Wild Populations: A Genetic Evaluation of the Reproductive Success of Hatchery Fish vs. Wild Fish / Hitoshi Araki / pp. 153-167 --- A Review of Bycatch and Discard Issue Toward Solution / Tatsuro Matsuoka / pp. 169-180 --- Keynote 2: Aquaculture --- Environmental Impact of Aquaculture on Coastal Planktonic Ecosystems / Yngvar Olsen and Lasse Mork Olsen / pp. 181-196 --- Meeting the Future Demand for Aquatic Food through Aquaculture: the Role of Aquatic Animal Health / Melba G. Bondad-Reantaso and Rohana P. Subasinghe / pp. 197-207 --- Keynote 3: Biotechnology --- Spermatogonial Transplantation in Fish: Production of Trout Offspring from Salmon Parents / Tomoyuki Okutsu, Yutaka Takeuchi and Goro Yoshizaki / pp. 209-219 --- Biotechnology of Marine Invertebrates-Recent Advances in Shrimp and Shellfish / Anchalee Tassanakajon, Tipachai Vatanavicharn, Premruethai Supungul, Sureerat Tang, Piti Amparyup, Kunlaya Somboonwiwat, Sirinit Tharntada, Jun Takahashi and Haruhiko Toyohara / pp. 221-239 --- Molecular Biotechnology of Development and Growth in Fish Muscle / Ian A. Johnston, Daniel J. Macqueen and Shugo Watabe / pp. 241-262 --- Molecular Innate Immunity in Teleost Fish: Review and Future Perspectives / Takashi Aoki, Tomokazu Takano, Mudjekeewis D. Santos, Hidehiro Kondo and Ikuo Hirono / pp. 263-276 --- Molecular Interaction between Fish Pathogens and Host Aquatic Animals / Laura L. Brown and Stewart C. Johnson / pp. 277-288 --- Keynote 4: Post Harvest Science and Technology --- Progress on Processing and Utilization of Aquatic Products in China / Xichang Wang, Jingjing Zhang and Jiechun Deng / pp. 289-295 --- Molecular Identification of Species and the Geographic Origin of Seafood / Michiaki Yamashita, Atsushi Namikoshi, Jun Iguchi, Yasuharu Takashima, Mohammed Anwar Hossain, Takeshi Yabu and Yumiko Yamashita / pp. 297-306 --- Keynote 5: Ecosystems—Linking Climate Change and Fisheries— --- Effects of Climate Change on Marine Ecosystems / Chen-Tung Arthur Chen / pp. 307-316 --- Keynote 6: Freshwater, Coastal and Marine Environments --- Harmful Algal Blooms and Ocean Observing Systems: Needs, Present Status and Future Potential / Donald M. Anderson / pp. 317-334 --- Coastal Artificial Habitats for Fishery and Environmental Management and Scientific Advancement / William Seaman / pp. 335-349 --- “Sato-Umi”—A New Concept for Sustainable Fisheries / Tetsuo Yanagi / pp. 351-358 --- Keynote 7: Biodiversity and Management --- Optimal Fishing Policies That Maximize Sustainable Ecosystem Services / Hiroyuki Matsuda, Mitsutaku Makino and Koji Kotani / pp. 359-369 --- Ecosystem-Based Sustainable Conservation and Management of Pacific Salmon / Masahide Kaeriyama / pp. 371-380 --- Some Lessons from Implementing Management Procedures / Douglas S. Butterworth / pp. 381-397 --- Keynote 8: Economics and Social Science --- Reconsidering the Contribution of Fisheries to Society and Millennium Development Goals / Kenneth Ruddle / pp. 399-411 --- Advantages and Disadvantages of the Fisheries Trade / Yoshiaki Matsuda / pp. 413-423 --- Keynote 9: Education and International Cooperation --- Japan’s Fisheries Cooperation: Principle, Programs and Achievements / Akihiro Mae / pp. 425-434 --- Institutional Capacity Development for Sustainable Aquaculture and Fisheries: Strategic Partnership with Local Institutions / Renato F. Agbayani and Joebert D. Toledo / pp. 435-448 --- International Cooperation for Higher Education in Aquaculture and Fisheries Science—A European Point of View— / Jean Dhont / pp. 449-460

Description / Table of Contents: This volume of the IOP Conference Series: Earth and Environmental Sciences presents a selection of papers given at the Donald D Harrington Symposium on the Geology of the Aegean held on the campus of the University of Texas at Austin on April 28-30, 2008. Donald D Harrington was born in Illinois in 1899 and moved westward after serving in the Army Air Corps during World War I. Mr Harrington took a position as a landman with Marlin Oil Company in Oklahoma. When the Texas Panhandle oil boom hit in 1926, he moved to Amarillo, Texas, where he met Sybil Buckingham—the granddaughter of one of Amarillo's founding families. They married in 1935 and went on to build one of the most successful independent oil and gas operations in Texas history. The couple created the Don and Sybil Harrington Foundation in 1951 to support worthy causes such as museums, medical research, education, and the arts. At the Harrington Symposium on the Geology of the Aegean, researchers presented papers organized under five general themes: (1) the geology of Aegean in general (2) the geologic history of specific domains within the Aegean (Cyclades, Menderes, Kazdag, Rhodope, Crete, southern Balkans, etc) (3) the dynamic tectonic processes that occur within the Aegean (4) its geo-archeological history, natural history and hazards and (5) comparisons of the Aegean to regions elsewhere (e.g., Basin and Ranges; Asian extensional terranes). The Aegean is a locus of dynamic research in a variety of fields, and the symposium provided an opportunity for geologists from a range of disciplines to interact and share new results and information about their research in the area...

Description / Table of Contents: Caldera-formation is one of the most awe-inspiring and powerful displays of nature's force. Resultant deposits may cover vast areas and significantly alter the immediate topography. Post-collapse activity may include resurgence, unrest, intra-caldera volcanism and potentially the start of a new magmatic cycle, perhaps eventually leading to renewed collapse. Since volcanoes and their eruptions are the surface manifestation of magmatic processes, calderas provide key insights into the generation and evolution of large-volume silicic magma bodies in the Earth's crust. Despite their potentially ferocious nature, calderas play a crucial role in modern society's life. Collapse calderas host essential economic deposits and supply power for many via the exploitation of geothermal reservoirs, and thus receive considerable scientific, economic and industrial attention. Calderas also attract millions of visitors world-wide with their spectacular scenic displays. To build on the outcomes of the 2005 calderas workshop in Tenerife (Spain) and to assess the most recent advances on caldera research, a follow-up meeting was proposed to be held in Mexico in 2008. This abstract volume presents contributions to the 2nd Calderas Workshop held at Hotel Misión La Muralla, Querétaro, Mexico, 19–25 October 2008. The title of the workshop `Reconstructing the evolution of collapse calderas: Magma storage, mobilisation and eruption' set the theme for five days of presentations and discussions, both at the venue as well as during visits to the surrounding calderas of Amealco, Amazcala and Huichapan. The multi-disciplinary workshop was attended by more than 40 scientist from North, Central and South America, Europe, Australia and Asia. Contributions covered five thematic topics: geology, geochemistry/petrology, structural analysis/modelling, geophysics, and hazards...

Description / Table of Contents: Over 25 years ago, Volume 9 of Reviews in Mineralogy: Amphiboles and Other Hydrous Pyriboles seemed to contain all that was possible to know about this group of fascinating minerals. The subsequent twenty-five years have shown that this assessment was wrong: Nature was keeping a lot in reserve, and has since revealed considerable new complexity in the constitution and behavior of amphiboles. Some of the advances in knowledge have been due to the use of new experimental techniques, some have been due to the investigation of hitherto neglected rock-types, and some have been due to the development of new ideas. The identification and systematic investigation of variable LLE (Light Lithophile Elements), particularly Li and H, led to the identification of several new amphibole species and the recognition that variable Li and H play an important role in chemical variations in amphiboles from both igneous and metamorphic parageneses. In turn, this work drove the development of microbeam SIMS to analyze LLE in amphiboles. Detailed mineralogical work on metasyenites showed hitherto unexpected solid-solution between Na and Li at the M(4) site in monoclinic amphiboles, a discovery that has upset the current scheme of amphibole classification and nomenclature and initiated new efforts in this direction. Systematic and well-planned synthesis of amphiboles, combined with careful spectroscopy, has greatly furthered our understanding of cation and anion order in amphiboles. The use of bond-valence theory to predict patterns of SRO (Short-Range Order) in amphiboles, and use of these predictions to understand the infrared spectra of well-characterized synthetic-amphibole solid-solutions, has shown that SRO is a major feature of the amphibole structure, and has resulted in major advances in our understanding of SRO in minerals. There has been significant progress relating changes in amphibole composition and cation ordering to petrogenetic conditions and trace-element behavior. Work on the nature of fibrous amphiboles and their toxicity and persistence in living organisms has emphasized the importance of accurate mineralogical characterization in environmental and health-related problems. The current volume has taken a different approach from previous volumes concerned with major groups of rock-forming minerals. Some of the contents have previously been organized by the investigative technique or groups of similar techniques: crystal-structure refinement, spectroscopy, TEM etc. Here, we have taken an approach that focuses on aspects of amphiboles rather than experimental techniques: crystal chemistry, new compositions, long-range order, short-range order etc., and all experimental results germane to these topics are discussed in each chapter. The intent of this approach is to focus on amphiboles, and to emphasize that many techniques are necessary to fully understand each aspect of the amphiboles and their behavior in both natural and industrial processes.

Description / Table of Contents: Since its inception in the famous 1936 paper by Birkhoff and von Neumann entitled “The logic of quantum mechanics” quantum logic, i.e. the logical investigation of quantum mechanics, has undergone an enormous development. Various schools of thought and approaches have emerged and there are a variety of technical results. Quantum logic is a heterogeneous field of research ranging from investigations which may be termed logical in the traditional sense to studies focusing on structures which are on the border between algebra and logic. For the latter structures the term quantum structures is appropriate. The chapters of this Handbook, which are authored by the most eminent scholars in the field, constitute a comprehensive presentation of the main schools, approaches and results in the field of quantum logic and quantum structures. Much of the material presented is of recent origin representing the frontier of the subject. The present volume focuses on quantum structures. Among the structures studied extensively in this volume are, just to name a few, Hilbert lattices, D-posets, effect algebras MV algebras, partially ordered Abelian groups and those structures underlying quantum probability. - Written by eminent scholars in the field of logic - A comprehensive presentation of the theory, approaches and results in the field of quantum logic - Volume focuses on quantum structures

Description / Table of Contents: Fluids rich in water, carbon and sulfur species and a variety of dissolved salts are a ubiquitous transport medium for heat and matter in the Earth’s interior. Fluid transport through the upper mantle and crust controls the origin of magmatism above subduction zones and results in natural risks of explosive volcanism. Fluids passing through rocks affect the chemical and heat budget of the global oceans, and can be utilized as a source of geothermal energy on land. Fluid transport is a key to the formation and the practical utilization of natural resources, from the origin of hydrothermal mineral deposits, through the exploitation of gaseous and liquid hydrocarbons as sources of energy and essential raw materials, to the subsurface storage of waste materials such as CO2. Different sources of fluids and variable paths of recycling volatile components from the hydrosphere and atmosphere through the solid interior of the Earth lead to a broad range of fluid compositions, from aqueous liquids and gases through water-rich silicate or salt melts to carbon-rich endmember compositions. Different rock regimes in the crust and mantle generate characteristic ranges of fluid composition, which depending on pressure, temperature and composition are miscible to greatly variable degrees. For example, aqueous liquids and vapors are increasingly miscible at elevated pressure and temperature. The degree of this miscibility is, however, greatly influenced by the presence of additional carbonic or salt components. A wide range of fluid–fluid interactions results from this partial miscibility of crustal fluids. Vastly different chemical and physical properties of variably miscible fluids, combined with fluid flow from one pressure – temperature regime to another, therefore have major consequences for the chemical and physical evolution of the crust and mantle. Several recent textbooks and review articles have addressed the role and diverse aspects of fluids in crustal processes. However, immiscibility of fluids and the associated phenomena of m ultiphase fluid flow are generally dealt with only in subsections with respect to specific environments and aspects of fluid mediated processes. This volume of Reviews in Mineralogy and Geochemistry attempts to fill this gap and to explicitly focus on the role that co-existing fluids play in the diverse geologic environments. It brings together the previously somewhat detached literature on fluid–fluid interactions in continental, volcanic, submarine and subduction zone environments. It emphasizes that fluid mixing and unmixing are widespread processes that may occur in all geologic environments of the entire crust and upper mantle. Despite different P-T conditions, the fundamental processes are analogous in the different settings.

Description / Table of Contents: Part I: Outline of the physical processes within mangrove systems --- Chapter 1: Introduction --- Chapter 2: Present state of mangrove studies from a physical viewpoint --- Chapter 3: Physical factors that shape mangrove environments --- Chapter 4: Hydrodynamics and physics that support the mangrove environment --- Chapter 5: Feedback processes that maintain the mangrove environment --- Chapter 6: Research technology --- Chapter 7: Modeling of mangrove systems --- Chapter 8: Future studies in the context of the preservation and utilization of mangroves

Description / Table of Contents: Simulation Techniques --- One-dimensional Electromagnetic Particle Code: KEMPO1 A Tutorial on Microphysics in Space Plasmas / Y. Omura / pp. 1-21 --- Vlasov-code simulation / J. Büuchner / pp. 23-46 --- δf Particle-in-Cell Plasma Simulation Model: Properties and Applications / R. D. Sydora / pp. 47-60 --- Automatic Adaptive Multi-Dimensional Particle In Cell / G. Lapenta / pp. 61-76 --- Generalized Curvilinear Coordinates in Hybrid and Electromagnetic Codes / D. W. Swift / pp. 77-89 --- A New Methodology for Multi-Scale Simulation of Plasmas / H. Karimabadi, Y. Omelchenko, J. Driscoll, R. Fujimoto, and K. Perumalla / pp. 91-99 --- Numerical methods used in the Lyon-Fedder-Mobarry Global code to model the magnetosphere / J. G. Lyon / pp. 101-109 --- Unstructured Meshes and Finite Elements in Space Plasma Modelling: Principles and Applications / R. Marchand, J. Y. Lu, K. Kabin, and R. Rankin / pp. 111-143 --- Visualization of Tangled Vector Field Topology and Global Bifurcation of Magnetospheric Dynamics / D. Cai, K. Nishikawa, and B. Lembege / pp. 145-166 --- Introduction to Virtual Reality Visualization by the CAVE system / N. Ohno and A. Kageyama / pp. 167-207 --- Simulation Software --- KEMPO1 Kyoto university ElectroMagnetic Particle cOde: 1d version / Y. Omura / pp. 209-235 --- The Elements for Setting up a Hybrid or Electromagnetic Code in Curvilinear Coordinates / D. W. Swift / pp. 237-282

Description / Table of Contents: The idea for this book was conceived in early June, 2005 at a paleoaltimetry workshop held at Lehigh University, Lehigh, Pennsyalvania and organized by Dork Sahagian. The workshop was funded by the tectonics program at NSF, and was designed to bring together researchers in paleoaltimetry to discuss different techniques and focus the community on ways of improving paleoelevation estimates and consequent interpretations of geodynamics and tectonics. At this meeting, some commented that a comprehensive volume describing the different methods could help advance the field. I offered to contact the Mineralogical Society of America and the Geochemical Society about publishing a RiMG volume on paleoaltimetry. Because many of the techniques used to infer paleoelevations are geochemically-based or deal with thermodynamic principles, the GS and MSA agreed to the project. Two years and roughly 1000 e-mails later, our book has arrived. The book is organized into 4 sections: (1) Geodynamic and geomorphologic rationale (Clark). This chapter provides the broad rationale behind paleoaltimetry, i.e., why we study it. (2) Stable isotope proxies. These 4 chapters cover theory of stable isotopes in precipitation and their response to altitudinal gradients (Rowley), and stable isotopes sytematics in paleosols (Quade, Garzione and Eiler), silicates (Mulch and Chamberlain) and fossils (Kohn and Dettman). (3) Proxies of atmospheric properties. These 4 chapters cover temperature lapse rates (Meyer), entropy (Forest), and atmospheric pressure proxies, including total atmospheric pressure from gas bubbles in basalt (Sahagian and Proussevitch), and the partial pressure of CO2 (Kouwenberg, Kürshner, and McElwain). Note that clumped isotope thermometry (Quade, Garzione and Eiler) also provides direct estimates of temperature. (4) Radiogenic and cosmogenic nuclides. These 2 chapters cover low-temperature thermochronologic approaches (Reiners) and cosmogenic isotopes (Riihimaki and Libarkin). Some chapters overlap in general content (e.g., basic principles of stable isotopes in precipitation are covered to different degrees in all stable isotope chapters), but no attempt was made to limit authors' discussion of principles, or somehow attempt to arrive at a "consensus view" on any specific topic. Because science advances by critical discussion of concepts, such restrictions were viewed as counterproductive. This does mean that different chapters may present different views on reliability of paleoelevation estimates, and readers are advised to read other chapters in the book on related topics – they may be more closely linked than they might at first appear! I hope readers of this book will discover and appreciate the synergy among paleoaltimetry, climate change, and tectonic geomorphology. These interrelationships create a complex, yet rich field of scientific enquiry that in turn offers insights into climate and geodynamics.

Description / Table of Contents: Medical Mineralogy and Geochemistry is an emergent, highly interdisciplinary field of study. The disciplines of mineralogy and geochemistry are integral components of cross-disciplinary investigations that aim to understand the interactions between geomaterials and humans as well as the normal and pathological formation of inorganic solid precipitates in vivo. Research strategies and methods include but are not limited to: stability and solubility studies of earth materials and biomaterials in biofluids or their proxies (i.e., equilibrium thermodynamic studies), kinetic studies of pertinent reactions under conditions relevant to the human body, molecular modeling studies, and geospatial and statistical studies aimed at evaluating environmental factors as causes for activating certain chronic diseases in genetically predisposed individuals or populations. Despite its importance, the area of Medical Mineralogy and Geochemistry has received limited attention by scientists, administrators, and the public. The objectives of this volume are to highlight some of the existing research opportunities and challenges, and to invigorate exchange of ideas between mineralogists and geochemists working on medical problems and medical scientists working on problems involving geomaterials and biominerals. Examples presented in this volume (Table of contents below) include the effects of inhaled dust particles in the lung (Huang et al. 2006; Schoonen et al. 2006), biomineralization of bones and teeth (Glimcher et al. 2006), the formation of kidney-stones, the calcification of arteries, the speciation exposure pathways and pathological effects of heavy metal contaminants (Reeder et al. 2006; Plumlee et al. 2006), the transport and fate of prions and pathological viruses in the environment (Schramm et al. 2006), the possible environmental-genetic link in the occurrence of neurodegenerative diseases (Perl and Moalem 2006), the design of biocompatible, bioactive ceramics for use as orthopaedic and dental implants and related tissue engineering applications (Cerruti and Sahai 2006) and the use of oxide-encapsulated living cells for the development of biosensors (Livage and Coradin 2006).

Description / Table of Contents: Earth is a water planet. Oceans of liquid water dominate the surface processes of the planet. On the surface, water controls weathering as well as transport and deposition of sediments. Liquid water is necessary for life. In the interior, water fluxes melting and controls the solid-state viscosity of the convecting mantle and so controls volcanism and tectonics. Oceans cover more than 70% of the surface but make up only about 0.025% of the planet's mass. Hydrogen is the most abundant element in the cosmos, but in the bulk Earth, it is one of the most poorly constrained chemical compositional variables. Almost all of the nominally anhydrous minerals that compose the Earth's crust and mantle can incorporate measurable amounts of hydrogen. Because these are minerals that contain oxygen as the principal anion, the major incorporation mechanism is as hydroxyl, OH-, and the chemical component is equivalent to water, H2O. Although the hydrogen proton can be considered a monovalent cation, it does not occupy same structural position as a typical cation in a mineral structure, but rather forms a hydrogen bond with the oxygens on the edge of the coordination polyhedron. The amount incorporated is thus quite sensitive to pressure and the amount of H that can be incorporated in these phases generally increases with pressure and sometimes with temperature. Hydrogen solubility in nominally anhydrous minerals is thus much more sensitive to temperature and pressure than that of other elements. Because the mass of rock in the mantle is so large relative to ocean mass, the amount that is incorporated the nominally anhydrous phases of the interior may constitute the largest reservoir of water in the planet. Understanding the behavior and chemistry of hydrogen in minerals at the atomic scale is thus central to understanding the geology of the planet. There have been significant recent advances in the detection, measurement, and location of H in the nominally anhydrous silicate and oxide minerals that compose the planet. There have also been advances in experimental methods for measurement of H diffusion and the effects of H on the phase boundaries and physical properties whereby the presence of H in the interior may be inferred from seismic or other geophysical studies. It is the objective of this volume to consolidate these advances with reviews of recent research in the geochemistry and mineral physics of hydrogen in the principal mineral phases of the Earth's crust and mantle.

Description / Table of Contents: The very successful orbital missions of the 1990's, Clementine and Lunar Prospector, provided key mineralogical, geochemical, and geophysical data sets that extended our view of the Moon beyond what we knew from Apollo and Luna exploration to a truly global perspective. These new data sets have been integrated with information gained from three preceding decades of study of lunar samples and older, less complete remotely sensed data sets. Although there have been no new lunar sample-return missions since Apollo and Luna, new samples are available in the form of meteorites, recognized to be pieces of the Moon. These, too, play a role in improved knowledge of the Moon and in helping to couple information obtained by remote sensing with information obtained from rock and soil samples. As we stand on the edge of a new era of lunar and planetary exploration, including new missions to the Moon, Mars, and other planets and moons, we find it essential to examine in depth how the wide variety of data sets obtained during the course of lunar exploration can be used together to better understand the formation of the Moon and how it evolved to its present state. Such an understanding holds important lessons for the new era of lunar exploration as well as the exploration of other planets in the Solar System. This will ultimately lead to better knowledge of how our own planet Earth - with its unique environment suitable for the origin and evolution of life - originated and changed with time. This book assesses the current state of knowledge of lunar geoscience, given the data sets provided by missions of the 1990's, and lists remaining key questions as well as new ones for future exploration to address. It documents how a planet or moon other than the world on which we live can be studied and understood in light of integrated suites of specific kinds of information. The Moon is the only body other than Earth for which we have material samples of known geologic context for study. This book seeks to show how the different kinds of information gained about the Moon relate to each other and also to learn from this experience, thus allowing more efficient planning for the exploration of other worlds.

Description / Table of Contents: For over half a century neutron scattering has added valuable information about the structure of materials. Unlike X-rays that have quickly become a standard laboratory technique and are available to all modern researchers in physics, chemistry, materials and earth sciences, neutrons have been elusive and reserved for specialists. A primary reason is that neutron beams, at least so far, are only produced at large dedicated facilities with nuclear reactors and accelerators and access to those has been limited. Yet there are a substantial number of experiments that use neutron scattering. While earth science users are still a small minority, neutron scattering has nevertheless contributed valuable information on geological materials for well over half a century. Important applications have been in crystallography (e.g. atomic positions of hydrogen and Al-Si ordering in feldspars and zeolites, Mn-Fe-Ti distribution in oxides), magnetic structures, mineral physics at non-ambient conditions and investigations of anisotropy and residual strain in structural geology and rock mechanics. Applications range from structure determinations of large single crystals, to powder refinements and short-range order determination in amorphous materials. Zeolites, feldspars, magnetite, carbonates, ice, clathrates are just some of the minerals where knowledge has greatly been augmented by neutron scattering experiments. Yet relatively few researchers in earth sciences are taking advantage of the unique opportunities provided by modern neutron facilities. The goal of this volume, and the associated short course by the Mineralogical Society of America held December 7-9 in Emeryville/Berkeley CA, is to attract new users to this field and introduce them to the wide range of applications. As the following chapters will illustrate, neutron scattering offers unique opportunities to quantify properties of earth materials and processes. Focus of this volume is on scientific applications but issues of instrumental availabilities and methods of data processing are also covered to help scientists from such diverse fields as crystallography, mineral physics, geochemistry, rock mechanics, materials science, biomineralogy become familiar with neutron scattering. A few years ago European mineralogists spearheaded a similar initiative that resulted in a special issue of the European Journal of Mineralogy (Volume 14, 2002). Since then the field has much advanced and a review volume that is widely available is highly desirable. At present there is really no easy access for earth scientists to this field and a more focused treatise can complement Bacon's (1955) book, now in its third edition, which is still a classic. The purpose of this volume is to provide an introduction for those not yet familiar with neutrons by describing basic features of neutrons and their interaction with matter as well illustrating important applications. The volume is divided into 17 Chapters. The first two chapters introduce properties of neutrons and neutron facilities, setting the stage for applications. Some applications rely on single crystals (Chapter 3) but mostly powders (Chapters 4-5) and bulk polycrystals (Chapters 15-16) are analyzed, at ambient conditions as well as low and high temperature and high pressure (Chapters 7-9). Characterization of magnetic structures remains a core application of neutron scattering (Chapter 6). The analysis of neutron data is not trivial and crystallographic methods have been modified to take account of the complexities, such as the Rietveld technique (Chapter 4) and the pair distribution function (Chapter 11). Information is not only obtained about solids but about liquids, melts and aqueous solutions as well (Chapters 11-13). In fact this field, approached with inelastic scattering (Chapter 10) and small angle scattering (Chapter 13) is opening unprecedented opportunities for earth sciences. Small angle scattering also contributes information about microstructures (Chapter 14). Neutron diffraction has become a favorite method to quantify residual stresses in deformed materials (Chapter 16) as well as preferred orientation patterns (Chapter 15). The volume concludes with a short introduction into neutron tomography and radiography that may well emerge as a principal application of neutron scattering in the future (Chapter 17).

Description / Table of Contents: The importance of sulfide minerals in ores has long been, and continues to be, a major reason for the interest of mineralogists and geochemists in these materials. Determining the fundamental chemistry of sulfides is key to understanding their conditions of formation and, hence, the geological processes by which certain ore deposits have formed. This, in turn, may inform the strategies used in exploration for such deposits and their subsequent exploitation. In this context, knowledge of structures, stabilities, phase relations and transformations, together with the relevant thermodynamic and kinetic data, is critical. As with many geochemical systems, much can also be learned from isotopic studies. The practical contributions of mineralogists and geochemists to sulfide studies extend beyond areas related to geological applications. The mining of sulfide ores, to satisfy ever increasing world demand for metals, now involves extracting very large volumes of rock that contains a few percent at most (and commonly less than one percent) of the metal being mined. This is true of relatively low value metals such as copper; for the precious metals commonly occurring as sulfides, or associated with them, the mineable concentrations (grades) are very much lower. The "as-mined" ores therefore require extensive processing in order to produce a concentrate with a much higher percentage content of the metal being extracted. Such mineral processing (beneficiation) involves crushing and grinding of the ores to a very fine grain size in order to liberate the valuable metal-bearing (sulfide) minerals which can then be concentrated. In some cases, the metalliferous (sulfide) minerals may have specific electrical or magnetic properties that can be exploited to enable separation and, hence, concentration. More commonly, froth flotation is used, whereby the surfaces of particles of a particular mineral phase are rendered water repellent by the addition of chemical reagents and hence are attracted to air bubbles pulsed through a mineral particle-water-reagent pulp. An understanding of the surface chemistry and surface reactivity of sulfide minerals is central to this major industrial process and, of course, knowledge of electrical and magnetic properties is very important in cases where those particular properties can be utilized. In the years since the publication of the first ever Reviews in Mineralogy volume (1974, at that time called MSA "Short Course Notes") which was entitled Sulfide Mineralogy, sulfides have become a focus of research interest for reasons centering on at least two other areas in addition to their key role in ore deposit studies and mineral processing technology. It is in these two new areas that much of the research on sulfides has been concentrated in recent years. The first of these areas relates to the capacity of sulfides to react with natural waters and acidify them; the resulting Acid Rock Drainage (ARD), or Acid Mine Drainage (AMD) where the sulfides are the waste products of mining, has the capacity to damage or destroy vegetation, fish and other aquatic life forms. These acid waters may also accelerate the dissolution of associated minerals containing potentially toxic elements (e.g., As, Pb, Cd, Hg, etc.) and these may, in turn, cause environmental damage. The much greater public awareness of the need to prevent or control AMD and toxic metal pollution has led to regulation and legislation in many parts of the world, and to the funding of research programs aimed at a greater understanding of the factors controlling the breakdown of sulfide minerals. The second reason for even greater research interest in sulfide minerals arose initially from the discoveries of active hydrothermal systems in the deep oceans. The presence of life forms that have chemical rather than photosynthetic metabolisms, and that occur in association with newly-forming sulfides, has encouraged research on the potential of sulfide surfaces in catalyzing the reactions leading to assembling of the complex molecules needed for life on Earth. These developments have been associated with a great upsurge of interest in the interactions between microbes and minerals, and in the role that minerals can play in biological systems. In the rapidly growing field of geomicrobiology, metal sulfides are of major interest. This interest is related to a variety of processes including, for example, those where bacteria interact with sulfides as part of their metabolic activity and cause chemical changes such as oxidation or reduction, or those in which biogenic sulfide minerals perform a specific function, such as that of navigation in magnetotactic bacteria. The development of research in areas such as geomicrobiology and environmental mineralogy and geochemistry, is also leading to a greater appreciation of the role of sulfides (particularly the iron sulfides) in the geochemical cycling of the elements at or near the surface of the Earth. For example, the iron sulfides precipitated in the reducing environments beneath the surface of modern sediments in many estuarine areas may play a key role in the trapping of toxic metals and other pollutants. In our understanding of "Earth Systems," geochemical processes involving metal sulfides are an important part of the story. The main objective of the present text is to provide an up-to-date review of sulfide mineralogy and geochemistry. The emphasis is, therefore, on such topics as crystal structure and classification, electrical and magnetic properties, spectroscopic studies, chemical bonding, high and low temperature phase relations, thermochemistry, and stable isotope systematics. In the context of this book, emphasis is on metal sulfides sensu stricto where only the compounds of sulfur with one or more metals are considered. Where it is appropriate for comparison, there is brief discussion of the selenide or telluride analogs of the metal sulfides. When discussing crystal structures and structural relationships, the sulfosalt minerals as well as the sulfides are considered in some detail (see Chapter 2; also for definition of the term "sulfosalt"). However, in other chapters there is only limited discussion of sulfosalts, in part because there is little information available beyond knowledge of chemical composition and crystal structure.

Description / Table of Contents: Part I: An integrated framework of disaster risk management --- An Integrated Risk Analysis Framework for Emerging Disaster Risks: Toward a better risk management of flood disaster in urban communities / S. Ikeda / pp. 1-21 --- Fundamental Characteristics of Flood Risk in Japan's Urban Areas / T. Sato / pp. 23-40 --- Integration Framework of Flood Risk Management: What should be integrated? / K. Seo / pp. 41-56 --- Public Preference and Willingness to Pay for Flood Risk Reduction / G. Zhai / pp. 57-87 --- New Mode of Risk Governance Enhanced by an e-community Platform / T. Nagasaka / pp. 89-107 --- Part II: Interdisciplinary studies of flood risk --- Uncertainty in Flood Risks and Public Understanding of Probable Rainfall / S. Shimokawa and Y. Takeuchi / pp. 109-119 --- Public Perception of Flood Risk and Community-based Disaster Preparedness / T. Motoyoshi / pp. 121-134 --- Residents' Perception about Disaster Prevention and Action for Risk Mitigation: The case of the Tokai flood in 2000 / K. Takao / pp. 135-151 --- Roles of Volunteers in Disaster Prevention: Implications of questionnaire and interview surveys / I. Suzuki / pp. 153-163 --- Issues and Attitudes of Local Government Officials for Flood Risk Management / K. Terumoto / pp. 165-176 --- The Niigata Flood in 2004 as a Flood Risk of "Low Probability but High Consequence" / T. Sato, T. Fukuzono, and S. Ikeda / pp. 177-192 --- Insurance Issues of Catastrophic Disasters in Japan: Lessons from the 2005 Hurricane Katrina Disaster / H. Tsubokawa / pp. 193-198 --- Part III: Pilot studies of implementing social platform of risk management in local community: Participatory flood risk communication support system (Pafrics) --- Participatory Flood Risk Communication Support System (Pafrics) / T. Fukuzono, T. Sato, Y. Takeuchi, K. Takao, S. Shimokawa, I. Suzuki, G. Zhai, K. Terumoto, T. Nagasaga, K. Seo, and S. Ikeda / pp. 199-211 --- Flood Risk Communication with Pafrics / Y. Takeuchi and I. Suzuki / pp. 213-224

Description / Table of Contents: The publication of this volume occurs at the one-hundredth anniversary of 1905, which has been called the annus mirabilus because it was the year of a number of enormous scientific advances. Among them are four papers by Albert Einstein explaining (among other things) Brownian motion, the photoelectric effect, the special theory of relativity, and the equation E = mc2. Also of significance in 1905 was the first application of another major advance in physics, which dramatically changed the fields of Earth and planetary science. In March of 1905 (and published the following year), Ernest Rutherford presented the following in the Silliman Lectures at Yale: "The helium observed in the radioactive minerals is almost certainly due to its production from the radium and other radioactive substances contained therein. If the rate of production of helium from known weights of the different radioelements were experimentally known, it should thus be possible to determine the interval required for the production of the amount of helium observed in radioactive minerals, or, in other words, to determine the age of the mineral." Rutherford E (1906) Radioactive Transformations. Charles Scriber's Sons, NY Thus radioisotopic geochronology was born, almost immediately shattering centuries of speculative conjectures and estimates and laying the foundation for establishment of the geologic timescale, the age of the Earth and meteorites, and a quantitative understanding of the rates of processes ranging from nebular condensation to Quaternary glaciations. There is an important subplot to the historical development of radioisotopic dating over the last hundred years, which, ironically, arises directly from the subsequent history of the U-He dating method Rutherford described in 1905. Almost as soon as radioisotopic dating was invented, it was recognized that the U-He [or later the (U-Th)/He method], provided ages that were often far younger than those allowed by stratigraphic correlations or other techniques such as U/Pb dating. Clearly, as R.J. Strutt noted in 1910, He ages only provided "minimum values, because helium leaks out from the mineral, to what extent it is impossible to say" (Strutt, 1910, Proc Roy Soc Lond, Ser A 84:379-388). For several decades most attention was diverted to U/Pb and other techniques better suited to measurement of crystallization ages and establishment of the geologic timescale. Gradually it became clear that other radioisotopic systems such as K/Ar and later fission-track also provided ages that were clearly younger than formation ages. In 1910 it may have been impossible to say the extent to which He (or most other elements) leaked out of minerals, but eventually a growing understanding of thermally-activated diffusion and annealing began to shed light on the significance of such ages. The recognition that some systems can provide cooling, rather than formation, ages, was gradual and diachronous across radioisotopic systems. Most of the heavy lifting in this regard was accomplished by researchers working on the interpretation of K/Ar and fission-track ages. Ironically, Rutherford¹s He-based radioisotopic system was one of the last to be quantitatively interpreted as a thermochronometer, and has been added to K/Ar (including 40Ar/39Ar) and fission-track methods as important for constraining the medium- to low-temperature thermal histories of rocks and minerals. Thermochronology has had a slow and sometimes fitful maturation from what were once troubling age discrepancies and poorly-understood open-system behaviors, into a powerful branch of geochronology applied by Earth scientists from diverse fields. Cooling ages, coupled with quantitative understanding of crystal-scale kinetic phenomena and crustal- or landscape-scale interpretational models now provide an enormous range of insights into tectonics, geomorphology, and subjects of other fields. At the same time, blossoming of lower temperature thermochronometric approaches has inspired new perspectives into the detailed behavior of higher temperature systems that previously may have been primarily used for establishing formation ages. Increased recognition of the importance of thermal histories, combined with improved analytical precision, has motivated progress in understanding the thermochronologic behavior of U/Pb, Sm/Nd, Lu/Hf, and other systems in a wide range of minerals, filling out the temperature range accessible by thermochronologic approaches. Thus the maturation of low- and medium-temperature thermochronology has led to a fuller understanding of the significance of radioisotopic ages in general, and to one degree or another has permeated most of geochronology. Except in rare cases, the goal of thermochronology is not thermal histories themselves, but rather the geologic processes responsible for them. Thermochronometers are now routinely used for quantifying exhumation histories (tectonic or erosional), magmatism, or landscape evolution. As thermochronology has matured, so have model and interpretational approaches used to convert thermal histories into these more useful geologic histories. Low-temperature thermochronology has been especially important in this regard, as knowledge of thermal processes in the uppermost few kilometers of the crust require consideration of coupled interactions of tectonic, geodynamic, and surface processes. Exciting new developments in these fields in turn drive improved thermochronologic methods and innovative sampling approaches.